Query 014268
Match_columns 427
No_of_seqs 548 out of 4381
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09354 recA recombinase A; P 100.0 3.7E-57 8.1E-62 444.4 33.3 324 64-390 6-330 (349)
2 cd00983 recA RecA is a bacter 100.0 4.8E-57 1E-61 440.8 32.8 321 66-389 3-324 (325)
3 PF00154 RecA: recA bacterial 100.0 1.4E-57 3E-62 442.9 27.6 320 67-388 1-321 (322)
4 TIGR02012 tigrfam_recA protein 100.0 3E-56 6.6E-61 435.0 28.5 319 65-386 2-321 (321)
5 COG0305 DnaB Replicative DNA h 100.0 3.3E-41 7.1E-46 338.0 19.2 298 2-336 99-433 (435)
6 PRK08006 replicative DNA helic 100.0 2.3E-38 5E-43 326.4 20.5 300 2-336 123-463 (471)
7 PRK08760 replicative DNA helic 100.0 4.1E-38 9E-43 325.4 19.9 299 2-336 129-467 (476)
8 PRK05636 replicative DNA helic 100.0 6.2E-38 1.3E-42 325.1 20.3 298 2-335 166-501 (505)
9 PRK08840 replicative DNA helic 100.0 1.4E-37 2.9E-42 320.1 20.7 299 2-335 116-455 (464)
10 COG0468 RecA RecA/RadA recombi 100.0 7.1E-37 1.5E-41 292.7 24.2 270 64-343 6-278 (279)
11 PRK07004 replicative DNA helic 100.0 9.3E-38 2E-42 321.8 19.3 301 2-336 111-451 (460)
12 PRK06904 replicative DNA helic 100.0 4.5E-37 9.7E-42 317.2 20.4 300 2-335 119-461 (472)
13 PRK05595 replicative DNA helic 100.0 8.3E-37 1.8E-41 314.8 20.9 295 2-335 104-437 (444)
14 PRK06321 replicative DNA helic 100.0 1.3E-36 2.7E-41 313.2 21.5 305 2-336 112-465 (472)
15 PRK09165 replicative DNA helic 100.0 1.1E-36 2.3E-41 316.7 20.0 299 2-336 117-487 (497)
16 PRK08506 replicative DNA helic 100.0 1.6E-36 3.5E-41 313.8 20.0 299 2-335 94-450 (472)
17 TIGR03600 phage_DnaB phage rep 100.0 4E-36 8.6E-41 308.3 20.8 287 2-325 94-420 (421)
18 PRK09519 recA DNA recombinatio 100.0 2.4E-35 5.1E-40 314.3 26.7 269 64-337 6-274 (790)
19 PRK06749 replicative DNA helic 100.0 8.7E-36 1.9E-40 304.3 22.0 291 2-334 95-425 (428)
20 PRK05748 replicative DNA helic 100.0 6.8E-36 1.5E-40 308.6 20.4 296 2-335 106-441 (448)
21 PHA02542 41 41 helicase; Provi 100.0 4.9E-35 1.1E-39 301.3 19.9 297 1-336 90-428 (473)
22 TIGR00665 DnaB replicative DNA 100.0 3.4E-34 7.4E-39 295.2 20.4 295 2-335 98-431 (434)
23 PLN03186 DNA repair protein RA 100.0 8.4E-30 1.8E-34 252.2 20.0 222 95-332 100-339 (342)
24 PLN03187 meiotic recombination 100.0 3.1E-29 6.8E-34 247.8 23.7 220 96-332 104-341 (344)
25 TIGR02238 recomb_DMC1 meiotic 100.0 2.6E-29 5.5E-34 246.7 22.2 220 95-331 73-311 (313)
26 PF03796 DnaB_C: DnaB-like hel 100.0 2.6E-29 5.5E-34 241.8 20.0 219 99-336 1-257 (259)
27 TIGR02239 recomb_RAD51 DNA rep 100.0 9E-29 1.9E-33 243.5 19.0 222 95-332 73-313 (316)
28 COG1066 Sms Predicted ATP-depe 100.0 1.8E-28 3.9E-33 240.0 20.2 226 95-352 70-297 (456)
29 PF08423 Rad51: Rad51; InterP 100.0 2.7E-28 5.8E-33 233.7 18.5 220 96-331 16-253 (256)
30 PTZ00035 Rad51 protein; Provis 100.0 1.2E-27 2.6E-32 237.4 22.0 222 95-332 95-334 (337)
31 cd01394 radB RadB. The archaea 100.0 3.3E-27 7.1E-32 221.2 21.8 210 100-330 1-217 (218)
32 PRK09361 radB DNA repair and r 100.0 2.9E-27 6.2E-32 222.7 21.2 211 99-331 4-222 (225)
33 cd01393 recA_like RecA is a b 100.0 2.8E-27 6.2E-32 222.6 20.4 206 100-318 1-223 (226)
34 TIGR02236 recomb_radA DNA repa 99.9 1.7E-26 3.7E-31 227.9 21.9 219 95-331 72-309 (310)
35 cd01121 Sms Sms (bacterial rad 99.9 3.1E-26 6.7E-31 229.7 21.6 215 96-341 60-276 (372)
36 TIGR00416 sms DNA repair prote 99.9 5E-26 1.1E-30 234.1 22.9 216 96-342 72-289 (454)
37 PRK04301 radA DNA repair and r 99.9 7.5E-26 1.6E-30 223.8 21.5 219 95-331 79-315 (317)
38 cd01123 Rad51_DMC1_radA Rad51_ 99.9 9.5E-26 2.1E-30 213.5 20.6 215 100-330 1-234 (235)
39 PRK11823 DNA repair protein Ra 99.9 1.6E-25 3.6E-30 230.1 23.0 216 96-342 58-275 (446)
40 PRK07773 replicative DNA helic 99.9 1.3E-26 2.8E-31 256.5 14.9 237 2-271 120-388 (886)
41 TIGR03878 thermo_KaiC_2 KaiC d 99.9 1.2E-24 2.7E-29 209.0 19.6 217 98-335 2-256 (259)
42 cd00984 DnaB_C DnaB helicase C 99.9 1.1E-24 2.4E-29 207.0 18.2 207 106-327 2-241 (242)
43 TIGR02237 recomb_radB DNA repa 99.9 3.2E-24 7E-29 199.6 20.8 200 107-330 1-208 (209)
44 TIGR03877 thermo_KaiC_1 KaiC d 99.9 4.9E-24 1.1E-28 202.4 19.5 203 99-333 2-232 (237)
45 cd01122 GP4d_helicase GP4d_hel 99.9 7.1E-24 1.5E-28 205.1 18.1 223 96-333 9-268 (271)
46 PRK04328 hypothetical protein; 99.9 1.4E-23 3.1E-28 200.6 19.6 204 98-333 3-234 (249)
47 KOG1434 Meiotic recombination 99.9 4.9E-24 1.1E-28 196.0 11.7 221 95-331 92-331 (335)
48 TIGR03881 KaiC_arch_4 KaiC dom 99.9 3.5E-22 7.7E-27 188.5 20.0 202 99-331 1-226 (229)
49 PF06745 KaiC: KaiC; InterPro 99.9 2.5E-22 5.5E-27 189.2 15.2 202 100-332 1-222 (226)
50 TIGR03880 KaiC_arch_3 KaiC dom 99.9 3E-21 6.4E-26 181.7 19.4 204 103-333 1-218 (224)
51 TIGR02655 circ_KaiC circadian 99.9 7.4E-21 1.6E-25 198.2 20.0 208 96-332 241-461 (484)
52 KOG1564 DNA repair protein RHP 99.9 1.1E-20 2.5E-25 176.3 18.5 224 97-330 81-348 (351)
53 TIGR02655 circ_KaiC circadian 99.9 1.3E-20 2.9E-25 196.3 18.8 205 99-332 2-228 (484)
54 PRK09302 circadian clock prote 99.9 1.9E-20 4.1E-25 196.8 20.0 210 95-333 8-239 (509)
55 PRK06067 flagellar accessory p 99.8 2.6E-20 5.6E-25 176.5 16.7 207 96-334 3-228 (234)
56 PRK09302 circadian clock prote 99.8 8.3E-20 1.8E-24 191.9 20.8 208 96-332 251-471 (509)
57 PRK05973 replicative DNA helic 99.8 9.3E-20 2E-24 171.6 10.7 145 107-273 54-206 (237)
58 PRK08533 flagellar accessory p 99.8 7.4E-18 1.6E-22 159.3 18.7 204 97-331 3-223 (230)
59 COG0467 RAD55 RecA-superfamily 99.7 7.3E-17 1.6E-21 155.4 19.4 209 97-334 2-234 (260)
60 cd01124 KaiC KaiC is a circadi 99.6 9.7E-15 2.1E-19 132.9 16.3 167 121-316 1-185 (187)
61 KOG1433 DNA repair protein RAD 99.6 1.4E-15 3.1E-20 148.3 8.4 219 96-330 89-319 (326)
62 COG2874 FlaH Predicted ATPases 99.6 4.3E-14 9.4E-19 128.3 14.4 201 99-331 9-228 (235)
63 PF13481 AAA_25: AAA domain; P 99.6 8.4E-15 1.8E-19 134.2 9.5 151 96-258 10-191 (193)
64 COG1136 SalX ABC-type antimicr 99.5 3.5E-14 7.7E-19 132.0 10.5 155 115-291 27-219 (226)
65 COG1126 GlnQ ABC-type polar am 99.5 4.5E-14 9.8E-19 128.6 9.7 160 115-296 24-218 (240)
66 cd01120 RecA-like_NTPases RecA 99.5 5.7E-13 1.2E-17 117.5 14.7 157 121-289 1-165 (165)
67 COG1125 OpuBA ABC-type proline 99.5 1.1E-13 2.4E-18 128.7 9.1 137 115-258 23-198 (309)
68 COG1120 FepC ABC-type cobalami 99.5 1.4E-13 3E-18 130.6 7.9 162 115-298 24-223 (258)
69 cd01125 repA Hexameric Replica 99.4 4.9E-12 1.1E-16 120.3 16.8 193 119-325 1-232 (239)
70 COG1135 AbcC ABC-type metal io 99.4 8.5E-13 1.8E-17 126.2 8.7 232 103-344 18-288 (339)
71 COG3842 PotA ABC-type spermidi 99.4 8E-13 1.7E-17 130.7 8.7 140 115-258 27-199 (352)
72 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 1.7E-12 3.7E-17 122.6 8.6 155 115-291 26-216 (254)
73 COG2884 FtsE Predicted ATPase 99.4 3.1E-12 6.7E-17 114.3 9.2 155 101-261 12-202 (223)
74 COG1131 CcmA ABC-type multidru 99.4 2.6E-12 5.7E-17 125.7 9.7 160 115-296 27-219 (293)
75 KOG2373 Predicted mitochondria 99.3 9.4E-12 2E-16 119.9 12.5 230 58-326 231-486 (514)
76 COG1118 CysA ABC-type sulfate/ 99.3 2.2E-12 4.7E-17 123.1 7.5 140 115-258 24-200 (345)
77 COG4555 NatA ABC-type Na+ tran 99.3 4.3E-12 9.2E-17 114.4 8.0 147 115-297 24-216 (245)
78 COG1127 Ttg2A ABC-type transpo 99.3 9.6E-12 2.1E-16 115.2 9.4 160 115-297 30-229 (263)
79 COG3839 MalK ABC-type sugar tr 99.3 7.7E-12 1.7E-16 123.1 8.6 138 116-257 26-195 (338)
80 COG1116 TauB ABC-type nitrate/ 99.3 5.7E-12 1.2E-16 117.8 5.8 137 116-258 26-193 (248)
81 PRK13537 nodulation ABC transp 99.2 2.2E-11 4.8E-16 120.0 9.2 160 115-296 29-220 (306)
82 COG3840 ThiQ ABC-type thiamine 99.2 2.4E-11 5.3E-16 108.0 7.3 153 115-294 21-210 (231)
83 TIGR01188 drrA daunorubicin re 99.2 6E-11 1.3E-15 116.8 10.9 160 115-296 15-206 (302)
84 PRK11650 ugpC glycerol-3-phosp 99.2 2.8E-11 6.2E-16 121.6 8.2 139 116-258 27-197 (356)
85 TIGR02314 ABC_MetN D-methionin 99.2 4E-11 8.7E-16 119.7 9.2 157 115-293 27-220 (343)
86 PRK13536 nodulation factor exp 99.2 3.4E-11 7.4E-16 120.3 8.7 159 116-296 64-254 (340)
87 COG3638 ABC-type phosphate/pho 99.2 2E-11 4.2E-16 112.8 6.1 172 102-296 15-230 (258)
88 COG1122 CbiO ABC-type cobalt t 99.2 5.6E-11 1.2E-15 112.3 9.3 161 115-297 26-222 (235)
89 PRK09519 recA DNA recombinatio 99.2 3.4E-11 7.4E-16 129.8 8.6 84 308-391 687-771 (790)
90 TIGR03265 PhnT2 putative 2-ami 99.2 5E-11 1.1E-15 119.6 8.5 139 116-258 27-197 (353)
91 cd03213 ABCG_EPDR ABCG transpo 99.2 2E-10 4.3E-15 105.8 10.8 139 115-290 31-188 (194)
92 PRK11432 fbpC ferric transport 99.2 7.3E-11 1.6E-15 118.4 8.4 140 115-258 28-199 (351)
93 TIGR03258 PhnT 2-aminoethylpho 99.2 8.7E-11 1.9E-15 118.2 8.7 156 116-293 28-218 (362)
94 TIGR00960 3a0501s02 Type II (G 99.2 1.1E-10 2.4E-15 109.1 8.9 154 115-290 25-214 (216)
95 PRK09452 potA putrescine/sperm 99.2 7.9E-11 1.7E-15 119.0 8.4 140 115-258 36-207 (375)
96 PRK09536 btuD corrinoid ABC tr 99.1 1E-10 2.2E-15 119.0 9.1 159 115-295 25-220 (402)
97 COG4604 CeuD ABC-type enteroch 99.1 3.7E-11 8.1E-16 108.0 5.2 57 115-172 23-82 (252)
98 PRK11607 potG putrescine trans 99.1 7.5E-11 1.6E-15 119.3 8.1 139 116-258 42-212 (377)
99 COG3845 ABC-type uncharacteriz 99.1 2.1E-10 4.6E-15 115.9 10.8 136 103-260 16-204 (501)
100 TIGR01288 nodI ATP-binding ABC 99.1 1.3E-10 2.8E-15 114.4 9.1 159 115-295 26-216 (303)
101 TIGR01186 proV glycine betaine 99.1 1.3E-10 2.7E-15 116.9 9.0 140 115-258 15-192 (363)
102 COG1124 DppF ABC-type dipeptid 99.1 7.7E-11 1.7E-15 109.5 6.8 151 116-293 30-221 (252)
103 COG0410 LivF ABC-type branched 99.1 2E-10 4.3E-15 106.0 9.3 160 116-296 26-219 (237)
104 cd03261 ABC_Org_Solvent_Resist 99.1 2.7E-10 5.7E-15 108.0 10.5 155 116-292 23-215 (235)
105 cd03226 ABC_cobalt_CbiO_domain 99.1 2.5E-10 5.5E-15 105.8 10.1 148 116-290 23-202 (205)
106 cd03256 ABC_PhnC_transporter A 99.1 3E-10 6.6E-15 107.8 10.7 156 115-292 23-223 (241)
107 PRK10851 sulfate/thiosulfate t 99.1 1.1E-10 2.3E-15 117.3 8.0 155 116-292 25-215 (353)
108 TIGR03522 GldA_ABC_ATP gliding 99.1 1.4E-10 3.1E-15 114.0 8.7 159 115-296 24-214 (301)
109 cd03266 ABC_NatA_sodium_export 99.1 1.8E-10 3.8E-15 107.8 8.2 72 115-187 27-100 (218)
110 cd03298 ABC_ThiQ_thiamine_tran 99.1 3E-10 6.4E-15 105.8 9.7 69 116-185 21-90 (211)
111 TIGR02315 ABC_phnC phosphonate 99.1 4.5E-10 9.7E-15 106.8 10.9 69 116-185 25-99 (243)
112 COG4152 ABC-type uncharacteriz 99.1 3.6E-10 7.9E-15 104.9 9.5 145 115-297 24-213 (300)
113 cd03268 ABC_BcrA_bacitracin_re 99.1 2.7E-10 5.9E-15 105.8 8.8 70 116-186 23-93 (208)
114 cd03269 ABC_putative_ATPase Th 99.1 3.6E-10 7.8E-15 105.2 9.3 69 116-186 23-91 (210)
115 PRK11000 maltose/maltodextrin 99.1 2.2E-10 4.7E-15 115.8 8.4 139 116-258 26-196 (369)
116 cd03219 ABC_Mj1267_LivG_branch 99.1 5.2E-10 1.1E-14 105.9 10.4 155 116-292 23-221 (236)
117 cd03216 ABC_Carb_Monos_I This 99.1 1.3E-09 2.8E-14 97.6 12.3 131 115-290 22-158 (163)
118 cd03259 ABC_Carb_Solutes_like 99.1 4.2E-10 9E-15 104.9 9.5 71 115-186 22-93 (213)
119 cd03292 ABC_FtsE_transporter F 99.1 5.6E-10 1.2E-14 104.0 10.3 70 116-186 24-99 (214)
120 cd03246 ABCC_Protease_Secretio 99.1 6.2E-10 1.3E-14 100.5 10.2 135 116-290 25-171 (173)
121 PRK11153 metN DL-methionine tr 99.1 2.9E-10 6.4E-15 113.8 8.7 140 115-258 27-203 (343)
122 cd03230 ABC_DR_subfamily_A Thi 99.1 1.7E-09 3.6E-14 97.7 12.8 137 116-290 23-171 (173)
123 cd03234 ABCG_White The White s 99.1 6.5E-10 1.4E-14 104.7 10.5 156 115-291 29-221 (226)
124 cd03218 ABC_YhbG The ABC trans 99.1 6.2E-10 1.3E-14 105.1 10.4 154 116-291 23-210 (232)
125 cd03265 ABC_DrrA DrrA is the A 99.1 4.6E-10 1E-14 105.2 9.4 71 115-186 22-94 (220)
126 TIGR02673 FtsE cell division A 99.1 5.6E-10 1.2E-14 104.1 9.9 71 115-186 24-100 (214)
127 cd03225 ABC_cobalt_CbiO_domain 99.1 6.7E-10 1.5E-14 103.3 10.3 148 115-289 23-209 (211)
128 PRK10895 lipopolysaccharide AB 99.1 6.3E-10 1.4E-14 105.8 10.3 150 116-292 26-215 (241)
129 cd03229 ABC_Class3 This class 99.1 3.7E-10 7.9E-15 102.5 8.2 137 116-289 23-176 (178)
130 cd03258 ABC_MetN_methionine_tr 99.1 6.9E-10 1.5E-14 104.9 10.4 70 116-186 28-103 (233)
131 PRK10619 histidine/lysine/argi 99.1 7.6E-10 1.6E-14 106.3 10.8 157 115-292 27-230 (257)
132 COG0411 LivG ABC-type branched 99.1 2.1E-10 4.5E-15 106.7 6.5 79 103-184 16-98 (250)
133 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 5.6E-10 1.2E-14 104.4 9.4 72 115-187 26-104 (218)
134 cd03262 ABC_HisP_GlnQ_permease 99.1 7.8E-10 1.7E-14 103.0 10.3 71 115-186 22-97 (213)
135 PRK11144 modC molybdate transp 99.1 5.8E-10 1.3E-14 112.1 10.1 134 116-258 21-191 (352)
136 cd03232 ABC_PDR_domain2 The pl 99.1 8.5E-10 1.8E-14 101.4 10.4 124 115-257 29-169 (192)
137 cd03215 ABC_Carb_Monos_II This 99.0 8.1E-10 1.8E-14 100.6 9.6 137 115-289 22-179 (182)
138 PRK13641 cbiO cobalt transport 99.0 4.5E-10 9.7E-15 109.8 8.3 156 115-293 29-224 (287)
139 cd03224 ABC_TM1139_LivF_branch 99.0 3.9E-10 8.5E-15 105.7 7.6 155 115-291 22-209 (222)
140 PRK11264 putative amino-acid A 99.0 1.2E-09 2.7E-14 104.3 11.2 155 115-291 25-221 (250)
141 PRK09493 glnQ glutamine ABC tr 99.0 1E-09 2.2E-14 104.3 10.4 156 115-292 23-214 (240)
142 TIGR01277 thiQ thiamine ABC tr 99.0 5.1E-10 1.1E-14 104.5 8.0 69 116-185 21-90 (213)
143 PRK13647 cbiO cobalt transport 99.0 9.4E-10 2E-14 106.8 10.2 155 116-293 28-217 (274)
144 cd03263 ABC_subfamily_A The AB 99.0 1E-09 2.2E-14 102.7 10.1 70 116-186 25-96 (220)
145 cd03228 ABCC_MRP_Like The MRP 99.0 3.1E-09 6.8E-14 95.7 12.8 120 116-257 25-156 (171)
146 TIGR03873 F420-0_ABC_ATP propo 99.0 1.3E-09 2.7E-14 104.7 10.8 71 115-186 23-96 (256)
147 cd03296 ABC_CysA_sulfate_impor 99.0 7.1E-10 1.5E-14 105.3 9.0 71 115-186 24-95 (239)
148 COG4598 HisP ABC-type histidin 99.0 8E-10 1.7E-14 98.1 8.5 150 116-296 29-234 (256)
149 PRK10908 cell division protein 99.0 1.3E-09 2.7E-14 102.4 10.5 70 115-185 24-99 (222)
150 TIGR02142 modC_ABC molybdenum 99.0 8.8E-10 1.9E-14 110.9 10.0 139 116-258 20-194 (354)
151 cd03295 ABC_OpuCA_Osmoprotecti 99.0 1.1E-09 2.5E-14 104.1 10.2 155 115-291 23-213 (242)
152 cd03293 ABC_NrtD_SsuB_transpor 99.0 4.9E-10 1.1E-14 105.1 7.4 69 115-186 26-94 (220)
153 PRK10070 glycine betaine trans 99.0 6.5E-10 1.4E-14 113.1 8.8 163 103-292 43-243 (400)
154 PRK13637 cbiO cobalt transport 99.0 1.3E-09 2.7E-14 106.6 10.4 151 115-293 29-224 (287)
155 COG4148 ModC ABC-type molybdat 99.0 1.3E-10 2.7E-15 109.7 3.2 140 116-259 21-192 (352)
156 PRK13651 cobalt transporter AT 99.0 6.7E-10 1.5E-14 109.4 8.5 156 115-293 29-244 (305)
157 cd03257 ABC_NikE_OppD_transpor 99.0 7.4E-10 1.6E-14 104.2 8.4 71 115-186 27-105 (228)
158 PRK04296 thymidine kinase; Pro 99.0 2.1E-09 4.6E-14 98.6 11.2 137 119-289 2-141 (190)
159 PRK11247 ssuB aliphatic sulfon 99.0 1.2E-09 2.7E-14 105.0 10.0 69 115-186 34-102 (257)
160 cd03260 ABC_PstB_phosphate_tra 99.0 7.8E-10 1.7E-14 104.1 8.5 154 115-291 22-217 (227)
161 PRK10253 iron-enterobactin tra 99.0 1.4E-09 3.1E-14 104.9 10.6 70 115-185 29-101 (265)
162 cd03301 ABC_MalK_N The N-termi 99.0 9.1E-10 2E-14 102.6 8.8 71 115-186 22-93 (213)
163 PRK11614 livF leucine/isoleuci 99.0 5.9E-10 1.3E-14 105.7 7.4 157 115-293 27-216 (237)
164 PRK13548 hmuV hemin importer A 99.0 9.4E-10 2E-14 105.8 8.9 156 115-292 24-219 (258)
165 PRK10771 thiQ thiamine transpo 99.0 1.2E-09 2.7E-14 103.2 9.5 68 115-183 21-89 (232)
166 PRK11308 dppF dipeptide transp 99.0 1.8E-09 3.9E-14 107.4 11.0 153 116-295 38-236 (327)
167 COG4559 ABC-type hemin transpo 99.0 3.8E-09 8.2E-14 96.3 12.0 161 115-297 23-224 (259)
168 PRK11831 putative ABC transpor 99.0 1.2E-09 2.5E-14 105.8 9.3 154 116-291 30-221 (269)
169 TIGR02211 LolD_lipo_ex lipopro 99.0 2.1E-09 4.6E-14 100.7 10.8 71 115-186 27-104 (221)
170 cd03233 ABC_PDR_domain1 The pl 99.0 2E-09 4.4E-14 99.7 10.4 72 115-187 29-105 (202)
171 COG4181 Predicted ABC-type tra 99.0 1.9E-09 4.1E-14 95.1 9.4 148 116-291 33-223 (228)
172 PRK13643 cbiO cobalt transport 99.0 1.1E-09 2.3E-14 107.2 8.7 156 115-293 28-223 (288)
173 PRK11231 fecE iron-dicitrate t 99.0 9.9E-10 2.1E-14 105.4 8.3 154 116-291 25-215 (255)
174 cd03294 ABC_Pro_Gly_Bertaine T 99.0 1.5E-09 3.2E-14 105.1 9.4 155 115-291 46-238 (269)
175 TIGR01184 ntrCD nitrate transp 99.0 2E-09 4.3E-14 101.8 10.1 68 116-186 8-75 (230)
176 PRK10575 iron-hydroxamate tran 99.0 1.1E-09 2.5E-14 105.6 8.6 70 115-185 33-105 (265)
177 PRK13635 cbiO cobalt transport 99.0 2E-09 4.3E-14 104.8 10.3 59 115-174 29-90 (279)
178 TIGR03411 urea_trans_UrtD urea 99.0 1.6E-09 3.5E-14 103.0 9.5 71 115-186 24-98 (242)
179 PRK13543 cytochrome c biogenes 99.0 3.5E-09 7.7E-14 98.9 11.6 70 115-185 33-102 (214)
180 PRK11124 artP arginine transpo 99.0 2E-09 4.3E-14 102.5 10.0 71 115-186 24-103 (242)
181 TIGR03864 PQQ_ABC_ATP ABC tran 99.0 3.3E-09 7.1E-14 100.6 11.5 71 115-186 23-95 (236)
182 PRK13646 cbiO cobalt transport 99.0 2.3E-09 4.9E-14 104.8 10.6 152 115-294 29-226 (286)
183 PRK11300 livG leucine/isoleuci 99.0 1.9E-09 4.2E-14 103.3 9.9 71 115-186 27-101 (255)
184 PRK13650 cbiO cobalt transport 99.0 1.5E-09 3.3E-14 105.6 9.3 59 115-174 29-90 (279)
185 cd03300 ABC_PotA_N PotA is an 99.0 1.3E-09 2.7E-14 103.2 8.5 155 116-292 23-209 (232)
186 COG1129 MglA ABC-type sugar tr 99.0 1.2E-09 2.6E-14 112.3 8.8 71 105-178 22-96 (500)
187 TIGR03005 ectoine_ehuA ectoine 99.0 2.2E-09 4.8E-14 102.8 10.2 71 115-186 22-108 (252)
188 COG1123 ATPase components of v 99.0 2.7E-09 6E-14 110.4 11.4 154 116-296 314-512 (539)
189 cd03235 ABC_Metallic_Cations A 99.0 1.7E-09 3.8E-14 100.8 9.2 58 115-175 21-78 (213)
190 TIGR01978 sufC FeS assembly AT 99.0 1.7E-09 3.7E-14 102.8 9.3 156 116-292 23-223 (243)
191 cd03264 ABC_drug_resistance_li 99.0 2E-09 4.3E-14 100.2 9.5 152 115-290 22-205 (211)
192 PRK15079 oligopeptide ABC tran 99.0 1.2E-09 2.7E-14 108.7 8.6 157 116-294 44-242 (331)
193 PRK13652 cbiO cobalt transport 99.0 2.8E-09 6E-14 103.6 10.9 58 116-174 27-87 (277)
194 TIGR03740 galliderm_ABC gallid 99.0 1E-09 2.2E-14 103.2 7.4 68 116-185 23-90 (223)
195 PRK15439 autoinducer 2 ABC tra 99.0 2.2E-09 4.8E-14 113.2 10.9 136 115-259 33-203 (510)
196 PRK13540 cytochrome c biogenes 99.0 4.6E-09 1E-13 97.1 11.7 70 116-186 24-95 (200)
197 PRK13634 cbiO cobalt transport 99.0 1.3E-09 2.9E-14 106.6 8.5 156 115-293 29-225 (290)
198 COG3598 RepA RecA-family ATPas 99.0 8E-09 1.7E-13 99.3 13.4 133 116-259 86-245 (402)
199 PRK14247 phosphate ABC transpo 99.0 3.7E-09 8.1E-14 101.0 11.3 154 115-292 25-223 (250)
200 PRK13649 cbiO cobalt transport 99.0 1.6E-09 3.4E-14 105.5 8.7 154 115-291 29-222 (280)
201 cd03237 ABC_RNaseL_inhibitor_d 99.0 1.5E-09 3.2E-14 103.8 8.2 41 114-155 20-60 (246)
202 PRK14250 phosphate ABC transpo 99.0 2.7E-09 6E-14 101.5 10.1 148 116-291 26-209 (241)
203 cd03267 ABC_NatA_like Similar 99.0 1.3E-09 2.9E-14 103.3 7.9 70 116-186 44-116 (236)
204 cd03297 ABC_ModC_molybdenum_tr 99.0 1.3E-09 2.9E-14 101.6 7.8 69 116-186 21-96 (214)
205 PRK11248 tauB taurine transpor 99.0 2E-09 4.3E-14 103.4 9.1 68 115-185 23-90 (255)
206 PRK09984 phosphonate/organopho 99.0 3.2E-09 7E-14 102.3 10.5 70 116-186 27-107 (262)
207 PRK13644 cbiO cobalt transport 99.0 1.8E-09 3.9E-14 104.8 8.8 150 116-293 25-214 (274)
208 PRK10584 putative ABC transpor 99.0 3.2E-09 6.9E-14 100.1 10.1 69 116-185 33-108 (228)
209 PRK14267 phosphate ABC transpo 99.0 4E-09 8.6E-14 101.0 10.8 72 115-187 26-107 (253)
210 PRK13631 cbiO cobalt transport 99.0 3.1E-09 6.6E-14 105.4 10.2 153 115-295 48-257 (320)
211 TIGR03410 urea_trans_UrtE urea 98.9 2.9E-09 6.2E-14 100.5 9.4 71 115-186 22-96 (230)
212 COG1123 ATPase components of v 98.9 2E-09 4.3E-14 111.4 8.8 154 116-295 32-236 (539)
213 cd03247 ABCC_cytochrome_bd The 98.9 3.4E-09 7.4E-14 96.1 9.4 135 115-290 24-172 (178)
214 PRK13648 cbiO cobalt transport 98.9 6.2E-09 1.3E-13 100.7 11.8 59 115-174 31-92 (269)
215 PRK11629 lolD lipoprotein tran 98.9 4.9E-09 1.1E-13 99.2 10.8 71 116-187 32-109 (233)
216 PRK13639 cbiO cobalt transport 98.9 4.5E-09 9.7E-14 102.1 10.6 59 115-174 24-87 (275)
217 PRK03695 vitamin B12-transport 98.9 4.2E-09 9E-14 100.7 10.2 57 116-174 19-78 (248)
218 PRK14268 phosphate ABC transpo 98.9 5.2E-09 1.1E-13 100.6 11.0 152 115-291 34-230 (258)
219 TIGR02769 nickel_nikE nickel i 98.9 4.4E-09 9.6E-14 101.5 10.4 155 116-292 34-229 (265)
220 TIGR03415 ABC_choXWV_ATP choli 98.9 2.3E-09 5E-14 108.4 8.6 156 116-293 47-244 (382)
221 PRK13539 cytochrome c biogenes 98.9 3.6E-09 7.7E-14 98.4 9.2 71 115-186 24-94 (207)
222 PRK13638 cbiO cobalt transport 98.9 2.8E-09 6E-14 103.3 8.8 156 115-292 23-214 (271)
223 cd03299 ABC_ModC_like Archeal 98.9 4.3E-09 9.3E-14 99.8 9.8 70 116-186 22-92 (235)
224 PRK10762 D-ribose transporter 98.9 3.3E-09 7.2E-14 111.6 9.9 70 115-185 26-99 (501)
225 cd03222 ABC_RNaseL_inhibitor T 98.9 1.1E-08 2.4E-13 92.7 11.9 125 115-289 21-147 (177)
226 PRK14242 phosphate transporter 98.9 6.8E-09 1.5E-13 99.4 11.0 153 116-291 29-225 (253)
227 PRK10982 galactose/methyl gala 98.9 4.2E-09 9.2E-14 110.5 10.4 136 115-259 20-197 (491)
228 cd03214 ABC_Iron-Siderophores_ 98.9 3.2E-09 7E-14 96.5 8.2 139 115-290 21-174 (180)
229 PRK13633 cobalt transporter AT 98.9 6.2E-09 1.3E-13 101.4 10.6 59 115-174 32-94 (280)
230 TIGR00972 3a0107s01c2 phosphat 98.9 5.9E-09 1.3E-13 99.5 10.3 152 115-292 23-221 (247)
231 PRK14235 phosphate transporter 98.9 7.8E-09 1.7E-13 100.0 11.2 154 115-291 41-239 (267)
232 PRK13636 cbiO cobalt transport 98.9 4.4E-09 9.5E-14 102.6 9.6 59 115-174 28-91 (283)
233 PRK09700 D-allose transporter 98.9 4.3E-09 9.3E-14 111.0 10.2 70 115-185 27-100 (510)
234 PRK10247 putative ABC transpor 98.9 5.4E-09 1.2E-13 98.4 9.8 70 115-186 29-101 (225)
235 TIGR01166 cbiO cobalt transpor 98.9 6.5E-09 1.4E-13 95.2 10.1 59 115-174 14-77 (190)
236 TIGR02770 nickel_nikD nickel i 98.9 5.2E-09 1.1E-13 98.9 9.6 58 116-174 9-71 (230)
237 COG1117 PstB ABC-type phosphat 98.9 7.2E-09 1.6E-13 94.6 10.0 139 115-258 29-210 (253)
238 cd03223 ABCD_peroxisomal_ALDP 98.9 6.6E-09 1.4E-13 93.2 9.8 125 115-290 23-163 (166)
239 TIGR03771 anch_rpt_ABC anchore 98.9 7.5E-09 1.6E-13 97.3 10.6 56 116-174 3-58 (223)
240 TIGR01189 ccmA heme ABC export 98.9 4.4E-09 9.6E-14 97.0 8.7 70 116-186 23-94 (198)
241 PRK13640 cbiO cobalt transport 98.9 4.7E-09 1E-13 102.4 9.3 59 115-174 29-93 (282)
242 PRK10419 nikE nickel transport 98.9 8.6E-09 1.9E-13 99.7 11.1 59 115-174 34-98 (268)
243 COG4586 ABC-type uncharacteriz 98.9 5.6E-09 1.2E-13 98.5 9.3 146 115-297 46-240 (325)
244 PRK15112 antimicrobial peptide 98.9 4.9E-09 1.1E-13 101.3 9.3 59 115-174 35-96 (267)
245 PRK13547 hmuV hemin importer A 98.9 1E-08 2.2E-13 99.5 11.4 58 116-174 24-92 (272)
246 PRK13538 cytochrome c biogenes 98.9 4.1E-09 8.8E-14 97.7 8.3 71 115-186 23-95 (204)
247 cd03253 ABCC_ATM1_transporter 98.9 6.5E-09 1.4E-13 98.4 9.8 62 115-177 23-87 (236)
248 COG4175 ProV ABC-type proline/ 98.9 4E-09 8.7E-14 101.3 8.2 150 97-258 37-227 (386)
249 cd03251 ABCC_MsbA MsbA is an e 98.9 1.2E-08 2.7E-13 96.4 11.3 62 115-177 24-88 (234)
250 COG0444 DppD ABC-type dipeptid 98.9 9.7E-09 2.1E-13 99.5 10.6 161 115-296 27-236 (316)
251 TIGR03608 L_ocin_972_ABC putat 98.9 6E-09 1.3E-13 96.5 8.8 70 116-186 21-97 (206)
252 COG1134 TagH ABC-type polysacc 98.9 1E-08 2.2E-13 95.7 10.1 145 115-297 49-230 (249)
253 cd03252 ABCC_Hemolysin The ABC 98.9 8E-09 1.7E-13 97.9 9.8 68 116-185 25-95 (237)
254 PRK13541 cytochrome c biogenes 98.9 8.4E-09 1.8E-13 94.9 9.5 67 116-184 23-89 (195)
255 PRK14256 phosphate ABC transpo 98.9 1.1E-08 2.3E-13 98.0 10.6 70 116-186 27-106 (252)
256 PRK09473 oppD oligopeptide tra 98.9 6.3E-09 1.4E-13 103.7 9.3 153 116-295 39-243 (330)
257 PRK09700 D-allose transporter 98.9 7.7E-09 1.7E-13 109.1 10.4 149 116-291 286-486 (510)
258 PRK13549 xylose transporter AT 98.9 6.9E-09 1.5E-13 109.3 10.0 70 115-185 27-102 (506)
259 PRK13642 cbiO cobalt transport 98.9 6.1E-09 1.3E-13 101.3 8.7 58 116-174 30-90 (277)
260 PRK14274 phosphate ABC transpo 98.9 1.5E-08 3.2E-13 97.5 11.3 152 116-292 35-232 (259)
261 PRK10938 putative molybdenum t 98.9 1.2E-08 2.6E-13 107.1 11.5 59 115-174 25-86 (490)
262 COG1137 YhbG ABC-type (unclass 98.9 1.4E-09 3E-14 98.2 3.8 161 115-297 26-222 (243)
263 cd03231 ABC_CcmA_heme_exporter 98.9 1.2E-08 2.7E-13 94.3 10.3 68 116-184 23-92 (201)
264 PRK10261 glutathione transport 98.9 5.7E-09 1.2E-13 112.6 9.2 157 115-293 346-543 (623)
265 PRK13632 cbiO cobalt transport 98.9 1.1E-08 2.4E-13 99.1 10.4 59 115-174 31-92 (271)
266 cd03217 ABC_FeS_Assembly ABC-t 98.9 2E-09 4.3E-14 99.6 4.8 139 116-292 23-183 (200)
267 PRK13645 cbiO cobalt transport 98.9 5E-09 1.1E-13 102.5 7.7 155 115-291 33-228 (289)
268 TIGR02633 xylG D-xylose ABC tr 98.9 1.1E-08 2.3E-13 107.7 10.8 137 115-259 23-204 (500)
269 PRK11288 araG L-arabinose tran 98.9 8.4E-09 1.8E-13 108.6 10.0 136 115-259 26-203 (501)
270 PRK10744 pstB phosphate transp 98.9 1.1E-08 2.3E-13 98.5 9.9 70 115-186 35-114 (260)
271 cd00267 ABC_ATPase ABC (ATP-bi 98.9 3.6E-08 7.8E-13 87.4 12.5 116 116-258 22-142 (157)
272 cd03369 ABCC_NFT1 Domain 2 of 98.9 2.3E-08 4.9E-13 92.8 11.7 62 115-177 30-94 (207)
273 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.9 1.1E-08 2.4E-13 97.0 9.7 61 116-177 26-89 (238)
274 PRK14245 phosphate ABC transpo 98.9 2E-08 4.3E-13 96.0 11.4 155 116-293 26-224 (250)
275 TIGR00968 3a0106s01 sulfate AB 98.8 1E-08 2.2E-13 97.3 9.3 70 116-186 23-93 (237)
276 PRK14269 phosphate ABC transpo 98.8 1.7E-08 3.7E-13 96.3 10.7 69 116-186 25-99 (246)
277 TIGR02982 heterocyst_DevA ABC 98.8 6.8E-09 1.5E-13 97.3 7.8 69 116-185 28-102 (220)
278 PRK14240 phosphate transporter 98.8 1.8E-08 3.8E-13 96.4 10.5 69 116-186 26-104 (250)
279 cd03245 ABCC_bacteriocin_expor 98.8 6.8E-09 1.5E-13 97.2 7.5 61 116-177 27-90 (220)
280 PRK14263 phosphate ABC transpo 98.8 2E-08 4.3E-13 96.8 10.9 149 115-288 30-222 (261)
281 TIGR03269 met_CoM_red_A2 methy 98.8 1.6E-08 3.6E-13 106.8 11.1 156 115-292 306-506 (520)
282 PRK15093 antimicrobial peptide 98.8 1.4E-08 3.1E-13 101.1 10.1 159 115-295 29-240 (330)
283 PRK14241 phosphate transporter 98.8 2E-08 4.4E-13 96.5 10.8 71 115-186 26-106 (258)
284 PRK14270 phosphate ABC transpo 98.8 2.3E-08 4.9E-13 95.7 11.0 71 115-187 26-106 (251)
285 CHL00131 ycf16 sulfate ABC tra 98.8 2.4E-08 5.3E-13 95.5 11.2 42 115-157 29-72 (252)
286 PRK14249 phosphate ABC transpo 98.8 1.9E-08 4E-13 96.3 10.4 154 116-292 27-224 (251)
287 PRK13549 xylose transporter AT 98.8 1E-08 2.2E-13 108.1 9.3 155 115-291 284-482 (506)
288 TIGR02324 CP_lyasePhnL phospho 98.8 1.7E-08 3.6E-13 94.9 9.7 70 116-186 31-111 (224)
289 PRK14273 phosphate ABC transpo 98.8 8.2E-09 1.8E-13 98.9 7.8 154 116-292 30-227 (254)
290 PRK15439 autoinducer 2 ABC tra 98.8 1.8E-08 3.8E-13 106.4 10.9 150 115-291 285-480 (510)
291 PRK11022 dppD dipeptide transp 98.8 1.3E-08 2.8E-13 101.3 9.3 159 115-295 29-235 (326)
292 PRK09580 sufC cysteine desulfu 98.8 2.4E-08 5.2E-13 95.2 10.8 60 115-175 23-88 (248)
293 PRK14248 phosphate ABC transpo 98.8 2E-08 4.4E-13 97.0 10.3 68 116-185 44-121 (268)
294 PRK11288 araG L-arabinose tran 98.8 1.4E-08 3.1E-13 106.8 10.0 151 115-292 275-474 (501)
295 PRK15056 manganese/iron transp 98.8 1.3E-08 2.7E-13 98.8 8.7 58 115-173 29-86 (272)
296 cd03254 ABCC_Glucan_exporter_l 98.8 7.1E-09 1.5E-13 97.7 6.7 61 115-176 25-88 (229)
297 PRK10762 D-ribose transporter 98.8 1.9E-08 4.1E-13 105.9 10.6 150 115-291 274-472 (501)
298 PRK14265 phosphate ABC transpo 98.8 2.5E-08 5.5E-13 96.8 10.7 149 116-289 43-235 (274)
299 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 2.1E-08 4.5E-13 109.6 11.2 152 116-293 476-663 (686)
300 PRK14262 phosphate ABC transpo 98.8 2.3E-08 5E-13 95.6 10.2 70 115-186 25-104 (250)
301 COG4608 AppF ABC-type oligopep 98.8 5.4E-08 1.2E-12 92.4 12.5 145 115-296 35-192 (268)
302 cd03244 ABCC_MRP_domain2 Domai 98.8 2.8E-08 6E-13 93.1 10.5 62 115-177 26-90 (221)
303 PRK14239 phosphate transporter 98.8 2.3E-08 5E-13 95.6 10.1 154 116-292 28-225 (252)
304 TIGR02633 xylG D-xylose ABC tr 98.8 2.3E-08 5E-13 105.2 11.0 149 116-290 283-479 (500)
305 PRK14275 phosphate ABC transpo 98.8 2.6E-08 5.7E-13 97.3 10.4 71 115-187 61-141 (286)
306 PRK14259 phosphate ABC transpo 98.8 2.7E-08 6E-13 96.3 10.5 70 115-186 35-114 (269)
307 PRK10418 nikD nickel transport 98.8 2.4E-08 5.2E-13 95.8 9.8 58 116-174 26-88 (254)
308 COG2274 SunT ABC-type bacterio 98.8 3.6E-08 7.8E-13 106.7 12.2 62 115-177 495-559 (709)
309 PRK14244 phosphate ABC transpo 98.8 3.4E-08 7.3E-13 94.5 10.8 68 116-185 28-105 (251)
310 PRK14271 phosphate ABC transpo 98.8 3.2E-08 7E-13 96.2 10.8 70 115-186 43-121 (276)
311 PRK14251 phosphate ABC transpo 98.8 3.3E-08 7.2E-13 94.5 10.7 70 116-187 27-106 (251)
312 PRK14253 phosphate ABC transpo 98.8 3.7E-08 8E-13 94.1 11.0 154 116-292 26-222 (249)
313 PRK14272 phosphate ABC transpo 98.8 3.5E-08 7.5E-13 94.4 10.8 71 115-186 26-106 (252)
314 COG4619 ABC-type uncharacteriz 98.8 5.3E-08 1.2E-12 85.8 10.8 68 102-172 14-84 (223)
315 PLN03211 ABC transporter G-25; 98.8 2.7E-08 5.8E-13 107.8 11.0 161 115-296 90-289 (659)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 5.6E-08 1.2E-12 85.2 11.1 106 115-258 22-129 (144)
317 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 3.4E-08 7.4E-13 108.3 11.9 152 116-295 502-692 (710)
318 PRK11174 cysteine/glutathione 98.8 2.9E-08 6.2E-13 106.6 11.1 61 116-178 373-436 (588)
319 COG4618 ArpD ABC-type protease 98.8 3.4E-08 7.4E-13 100.3 10.8 140 116-292 359-549 (580)
320 TIGR01194 cyc_pep_trnsptr cycl 98.8 2.6E-08 5.6E-13 106.2 10.5 61 116-177 365-428 (555)
321 cd03290 ABCC_SUR1_N The SUR do 98.8 1.7E-08 3.7E-13 94.4 8.1 68 116-185 24-98 (218)
322 cd03289 ABCC_CFTR2 The CFTR su 98.8 3.4E-08 7.4E-13 95.9 10.4 60 116-177 27-89 (275)
323 cd03248 ABCC_TAP TAP, the Tran 98.8 2.5E-08 5.3E-13 93.9 9.2 61 115-176 36-99 (226)
324 PRK14260 phosphate ABC transpo 98.8 4.2E-08 9.1E-13 94.4 10.9 149 116-289 30-224 (259)
325 PRK14236 phosphate transporter 98.8 3.5E-08 7.5E-13 95.7 10.4 70 115-186 47-126 (272)
326 TIGR01257 rim_protein retinal- 98.8 1.3E-08 2.9E-13 120.1 8.8 167 106-296 1954-2152(2272)
327 PRK14238 phosphate transporter 98.8 3.2E-08 7E-13 95.9 10.1 69 116-186 47-125 (271)
328 PRK14254 phosphate ABC transpo 98.8 3.4E-08 7.3E-13 96.5 10.3 70 116-187 62-141 (285)
329 PRK11176 lipid transporter ATP 98.8 3E-08 6.5E-13 106.3 10.8 61 116-177 366-429 (582)
330 PRK11701 phnK phosphonate C-P 98.8 3E-08 6.6E-13 95.3 9.7 58 116-174 29-98 (258)
331 cd03238 ABC_UvrA The excision 98.8 1.4E-07 3E-12 85.5 13.3 134 116-290 18-164 (176)
332 cd03250 ABCC_MRP_domain1 Domai 98.8 1.7E-08 3.8E-13 93.4 7.6 40 115-155 27-66 (204)
333 PRK14237 phosphate transporter 98.8 4.9E-08 1.1E-12 94.4 11.0 151 116-291 43-239 (267)
334 PRK09544 znuC high-affinity zi 98.8 2.3E-08 5E-13 95.8 8.6 38 116-154 27-64 (251)
335 TIGR00955 3a01204 The Eye Pigm 98.8 4.9E-08 1.1E-12 105.3 12.1 169 106-296 40-249 (617)
336 PRK14257 phosphate ABC transpo 98.8 4.7E-08 1E-12 97.4 10.9 154 115-293 104-303 (329)
337 PRK15134 microcin C ABC transp 98.8 1.8E-08 4E-13 106.7 8.3 155 115-292 308-504 (529)
338 PRK14243 phosphate transporter 98.8 4.9E-08 1.1E-12 94.2 10.6 69 116-186 33-111 (264)
339 TIGR01187 potA spermidine/putr 98.8 1.3E-08 2.9E-13 101.2 6.9 131 124-258 1-163 (325)
340 TIGR00958 3a01208 Conjugate Tr 98.7 3.4E-08 7.5E-13 108.2 10.3 154 115-294 503-693 (711)
341 PRK14258 phosphate ABC transpo 98.7 1.5E-08 3.3E-13 97.5 6.7 69 116-186 30-108 (261)
342 PRK14246 phosphate ABC transpo 98.7 7.3E-08 1.6E-12 92.7 11.3 70 116-186 33-111 (257)
343 TIGR03269 met_CoM_red_A2 methy 98.7 6.1E-08 1.3E-12 102.5 11.6 39 115-154 22-62 (520)
344 PRK14261 phosphate ABC transpo 98.7 4.9E-08 1.1E-12 93.5 9.8 69 116-186 29-107 (253)
345 PRK13546 teichoic acids export 98.7 6.3E-08 1.4E-12 93.5 10.5 40 116-156 47-86 (264)
346 TIGR02323 CP_lyasePhnK phospho 98.7 5.8E-08 1.3E-12 93.0 10.0 42 115-157 25-66 (253)
347 PRK10982 galactose/methyl gala 98.7 4.9E-08 1.1E-12 102.5 10.3 148 116-290 271-467 (491)
348 PRK14252 phosphate ABC transpo 98.7 6.3E-08 1.4E-12 93.5 10.2 69 116-186 39-119 (265)
349 TIGR01257 rim_protein retinal- 98.7 3E-08 6.5E-13 117.2 9.3 158 115-295 952-1141(2272)
350 PRK15064 ABC transporter ATP-b 98.7 4.3E-08 9.2E-13 104.0 9.5 40 115-155 23-62 (530)
351 PRK14255 phosphate ABC transpo 98.7 8.1E-08 1.8E-12 91.9 10.5 70 116-187 28-107 (252)
352 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 4.1E-08 9E-13 92.4 8.2 40 116-156 45-84 (224)
353 PRK10522 multidrug transporter 98.7 6.9E-08 1.5E-12 102.7 10.7 155 115-292 345-527 (547)
354 PRK10790 putative multidrug tr 98.7 6.1E-08 1.3E-12 104.1 10.2 62 116-178 364-428 (592)
355 PRK14264 phosphate ABC transpo 98.7 7.9E-08 1.7E-12 94.8 10.2 69 116-186 68-146 (305)
356 cd03288 ABCC_SUR2 The SUR doma 98.7 1E-07 2.2E-12 91.6 10.5 60 116-176 44-106 (257)
357 COG4988 CydD ABC-type transpor 98.7 1E-07 2.2E-12 98.8 10.9 62 116-178 344-408 (559)
358 PRK15134 microcin C ABC transp 98.7 3E-08 6.5E-13 105.1 7.3 142 115-259 31-220 (529)
359 PRK10261 glutathione transport 98.7 3.8E-08 8.1E-13 106.3 8.1 141 115-259 38-232 (623)
360 PRK13409 putative ATPase RIL; 98.7 3.8E-08 8.2E-13 105.3 8.0 39 115-154 361-399 (590)
361 PRK11160 cysteine/glutathione 98.7 1E-07 2.2E-12 102.0 11.3 63 115-178 362-427 (574)
362 TIGR01842 type_I_sec_PrtD type 98.7 9.3E-08 2E-12 101.7 10.8 62 115-177 340-404 (544)
363 PRK15064 ABC transporter ATP-b 98.7 4.7E-08 1E-12 103.6 8.5 40 115-155 341-380 (530)
364 PRK14266 phosphate ABC transpo 98.7 1.2E-07 2.7E-12 90.5 10.4 63 115-178 25-97 (250)
365 TIGR03375 type_I_sec_LssB type 98.7 1.5E-07 3.3E-12 103.0 12.4 61 116-177 488-551 (694)
366 PRK13657 cyclic beta-1,2-gluca 98.7 1.2E-07 2.6E-12 101.8 11.4 61 116-177 358-421 (588)
367 KOG0055 Multidrug/pheromone ex 98.7 1.1E-07 2.4E-12 105.8 11.0 60 116-176 376-438 (1228)
368 COG1132 MdlB ABC-type multidru 98.7 1.1E-07 2.5E-12 101.5 10.7 170 97-296 331-545 (567)
369 cd00544 CobU Adenosylcobinamid 98.6 1.4E-07 3.1E-12 84.8 9.6 120 121-254 1-124 (169)
370 TIGR01192 chvA glucan exporter 98.6 1.3E-07 2.7E-12 101.6 10.6 62 116-178 358-422 (585)
371 cd03236 ABC_RNaseL_inhibitor_d 98.6 1.4E-07 2.9E-12 90.7 9.8 36 116-152 23-58 (255)
372 TIGR01193 bacteriocin_ABC ABC- 98.6 1.7E-07 3.7E-12 102.8 11.7 62 115-177 496-560 (708)
373 PRK10789 putative multidrug tr 98.6 1.5E-07 3.2E-12 100.7 10.7 63 115-178 337-402 (569)
374 PF13479 AAA_24: AAA domain 98.6 2.9E-07 6.2E-12 86.1 11.3 157 119-289 3-174 (213)
375 KOG0057 Mitochondrial Fe/S clu 98.6 3E-07 6.4E-12 94.3 11.7 61 115-177 374-437 (591)
376 COG4525 TauB ABC-type taurine 98.6 1.1E-07 2.4E-12 85.8 7.5 138 115-258 27-195 (259)
377 PRK11819 putative ABC transpor 98.6 1.7E-07 3.7E-12 99.9 10.3 63 115-186 29-91 (556)
378 PRK13545 tagH teichoic acids e 98.6 1.8E-07 3.9E-12 97.4 9.9 41 115-156 46-86 (549)
379 TIGR01846 type_I_sec_HlyB type 98.6 2.5E-07 5.5E-12 101.2 11.7 62 115-177 479-543 (694)
380 PRK10938 putative molybdenum t 98.6 2.1E-07 4.6E-12 97.7 10.6 59 115-174 282-345 (490)
381 TIGR02857 CydD thiol reductant 98.6 1.7E-07 3.7E-12 99.3 10.0 63 115-178 344-409 (529)
382 smart00382 AAA ATPases associa 98.6 1.1E-06 2.4E-11 74.3 13.0 92 118-211 1-92 (148)
383 TIGR02203 MsbA_lipidA lipid A 98.6 1.4E-07 2.9E-12 100.9 8.9 61 116-177 355-418 (571)
384 TIGR02204 MsbA_rel ABC transpo 98.6 3.9E-07 8.4E-12 97.6 12.3 61 116-177 363-426 (576)
385 KOG0058 Peptide exporter, ABC 98.6 3.2E-07 6.8E-12 97.1 11.0 62 115-177 490-554 (716)
386 TIGR02868 CydC thiol reductant 98.6 3.1E-07 6.8E-12 97.3 11.2 62 116-178 358-421 (529)
387 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 2.1E-07 4.6E-12 99.2 9.9 63 115-186 27-89 (552)
388 COG0396 sufC Cysteine desulfur 98.6 3.7E-07 7.9E-12 84.5 9.9 45 116-160 27-72 (251)
389 PLN03130 ABC transporter C fam 98.6 2.8E-07 6E-12 108.8 11.5 155 115-296 1261-1454(1622)
390 COG4172 ABC-type uncharacteriz 98.6 2.3E-07 5.1E-12 91.9 9.1 151 116-296 310-509 (534)
391 PF07088 GvpD: GvpD gas vesicl 98.5 1.1E-06 2.3E-11 87.1 13.2 180 116-325 7-206 (484)
392 PRK10535 macrolide transporter 98.5 3.7E-07 8E-12 99.0 11.1 69 116-185 31-106 (648)
393 PRK11147 ABC transporter ATPas 98.5 1.4E-07 3E-12 102.2 7.7 38 115-153 341-378 (635)
394 COG4133 CcmA ABC-type transpor 98.5 4E-07 8.7E-12 81.8 9.3 83 102-190 16-100 (209)
395 COG4987 CydC ABC-type transpor 98.5 3.8E-07 8.3E-12 93.4 10.2 154 115-296 360-554 (573)
396 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 1.6E-07 3.4E-12 100.1 7.8 39 115-154 344-382 (552)
397 PF13401 AAA_22: AAA domain; P 98.5 6.2E-07 1.3E-11 76.4 9.8 114 117-255 2-125 (131)
398 PLN03140 ABC transporter G fam 98.5 4E-07 8.7E-12 106.2 11.4 162 106-289 895-1095(1470)
399 COG4674 Uncharacterized ABC-ty 98.5 1.4E-07 3E-12 85.2 5.7 50 103-155 17-66 (249)
400 PRK11819 putative ABC transpor 98.5 2E-07 4.4E-12 99.3 8.1 62 116-186 347-409 (556)
401 cd03291 ABCC_CFTR1 The CFTR su 98.5 1.6E-07 3.5E-12 91.5 6.7 38 116-154 60-97 (282)
402 PLN03232 ABC transporter C fam 98.5 4.9E-07 1.1E-11 106.4 11.8 151 115-292 1258-1447(1495)
403 PTZ00243 ABC transporter; Prov 98.5 6.8E-07 1.5E-11 105.4 12.8 62 116-178 1333-1397(1560)
404 PLN03140 ABC transporter G fam 98.5 2E-07 4.4E-12 108.7 8.2 74 115-189 187-263 (1470)
405 TIGR00957 MRP_assoc_pro multi 98.5 3.2E-07 7E-12 108.0 9.9 151 116-293 1309-1498(1522)
406 COG4136 ABC-type uncharacteriz 98.5 4.2E-07 9.1E-12 78.8 7.9 65 115-180 24-92 (213)
407 PRK13409 putative ATPase RIL; 98.5 2.5E-07 5.4E-12 99.1 7.7 36 116-152 96-131 (590)
408 PRK10636 putative ABC transpor 98.5 2.4E-07 5.1E-12 100.4 7.5 39 115-154 334-372 (638)
409 TIGR00956 3a01205 Pleiotropic 98.5 3.3E-07 7.2E-12 106.9 9.0 160 115-294 83-291 (1394)
410 TIGR00956 3a01205 Pleiotropic 98.5 2.3E-07 4.9E-12 108.3 7.3 78 107-188 779-859 (1394)
411 COG1119 ModF ABC-type molybden 98.5 1.8E-06 3.9E-11 80.7 11.8 56 115-171 53-112 (257)
412 PRK05800 cobU adenosylcobinami 98.4 8.8E-07 1.9E-11 79.8 9.0 119 120-255 2-125 (170)
413 PTZ00265 multidrug resistance 98.4 8.2E-07 1.8E-11 104.0 10.9 71 115-187 407-481 (1466)
414 KOG1433 DNA repair protein RAD 98.4 3.8E-08 8.2E-13 96.5 -0.1 312 65-387 6-322 (326)
415 KOG0061 Transporter, ABC super 98.4 5.4E-07 1.2E-11 96.8 8.4 73 115-188 52-127 (613)
416 PTZ00265 multidrug resistance 98.4 7.9E-07 1.7E-11 104.1 10.4 62 115-177 1190-1308(1466)
417 PRK15177 Vi polysaccharide exp 98.4 5.2E-07 1.1E-11 84.3 7.2 39 116-155 10-49 (213)
418 TIGR00954 3a01203 Peroxysomal 98.4 4.6E-07 9.9E-12 98.5 7.5 39 115-154 474-512 (659)
419 PRK10636 putative ABC transpor 98.4 9.4E-07 2E-11 95.7 9.6 40 115-155 23-62 (638)
420 TIGR01271 CFTR_protein cystic 98.4 9.1E-07 2E-11 104.1 9.8 61 116-178 1242-1305(1490)
421 KOG0056 Heavy metal exporter H 98.4 2.4E-06 5.2E-11 86.6 11.3 71 101-174 548-621 (790)
422 PLN03073 ABC transporter F fam 98.4 5.9E-07 1.3E-11 98.1 7.6 38 115-153 531-568 (718)
423 PRK11147 ABC transporter ATPas 98.4 1.9E-06 4.2E-11 93.3 11.3 40 115-155 25-64 (635)
424 PF00005 ABC_tran: ABC transpo 98.4 2.5E-07 5.4E-12 79.7 3.6 69 116-185 8-79 (137)
425 TIGR01618 phage_P_loop phage n 98.4 6.3E-06 1.4E-10 77.1 12.7 156 119-288 12-181 (220)
426 COG4161 ArtP ABC-type arginine 98.3 4.3E-06 9.4E-11 73.4 10.3 132 116-256 25-201 (242)
427 KOG0055 Multidrug/pheromone ex 98.3 4.9E-06 1.1E-10 93.1 12.6 156 115-297 1012-1207(1228)
428 KOG0059 Lipid exporter ABCA1 a 98.3 2.5E-06 5.5E-11 95.5 10.3 165 115-326 587-799 (885)
429 COG4167 SapF ABC-type antimicr 98.3 1.1E-05 2.3E-10 72.4 12.2 56 116-172 36-94 (267)
430 cd03271 ABC_UvrA_II The excisi 98.3 2.9E-06 6.4E-11 81.6 8.9 27 115-141 17-43 (261)
431 COG4107 PhnK ABC-type phosphon 98.3 5.5E-06 1.2E-10 73.6 9.5 48 103-155 21-68 (258)
432 cd03278 ABC_SMC_barmotin Barmo 98.2 7E-06 1.5E-10 75.8 10.3 27 116-144 20-46 (197)
433 COG4172 ABC-type uncharacteriz 98.2 1.1E-05 2.3E-10 80.4 10.7 61 116-176 33-104 (534)
434 PRK07721 fliI flagellum-specif 98.2 9.2E-06 2E-10 83.6 10.5 59 98-160 140-198 (438)
435 COG1101 PhnK ABC-type uncharac 98.2 2.7E-05 5.8E-10 71.7 12.2 45 115-160 28-72 (263)
436 cd03283 ABC_MutS-like MutS-lik 98.2 1.7E-05 3.7E-10 73.3 10.9 28 116-143 22-49 (199)
437 PLN03073 ABC transporter F fam 98.2 3.6E-06 7.8E-11 92.1 7.3 41 115-156 199-243 (718)
438 KOG0054 Multidrug resistance-a 98.1 3.2E-05 6.9E-10 88.5 14.5 69 106-177 1151-1226(1381)
439 TIGR01271 CFTR_protein cystic 98.1 6.3E-06 1.4E-10 97.1 9.2 40 115-155 448-487 (1490)
440 cd00009 AAA The AAA+ (ATPases 98.1 4E-05 8.7E-10 65.2 11.7 79 118-210 18-97 (151)
441 COG4778 PhnL ABC-type phosphon 98.1 2.4E-05 5.3E-10 69.4 10.2 135 115-257 33-213 (235)
442 COG0488 Uup ATPase components 98.1 2E-05 4.4E-10 82.9 11.2 31 115-146 25-55 (530)
443 PF00448 SRP54: SRP54-type pro 98.1 7.6E-05 1.6E-09 68.9 13.4 88 120-210 2-96 (196)
444 TIGR02858 spore_III_AA stage I 98.1 3E-05 6.5E-10 75.0 10.9 113 120-257 112-230 (270)
445 COG4615 PvdE ABC-type sideroph 98.1 2.6E-05 5.6E-10 77.5 10.2 43 116-159 346-388 (546)
446 PF00004 AAA: ATPase family as 98.0 6.3E-05 1.4E-09 63.7 11.2 113 122-259 1-115 (132)
447 TIGR00957 MRP_assoc_pro multi 98.0 2.1E-05 4.6E-10 93.0 10.7 40 115-155 660-699 (1522)
448 PLN03130 ABC transporter C fam 98.0 1.7E-05 3.7E-10 94.0 9.0 31 116-146 640-670 (1622)
449 COG5265 ATM1 ABC-type transpor 98.0 5.6E-05 1.2E-09 75.7 10.9 59 116-175 286-347 (497)
450 cd03270 ABC_UvrA_I The excisio 98.0 3.1E-05 6.8E-10 73.0 8.7 24 116-139 18-41 (226)
451 cd03115 SRP The signal recogni 97.9 0.00018 3.9E-09 64.6 12.9 87 121-210 2-95 (173)
452 cd03272 ABC_SMC3_euk Eukaryoti 97.9 4.8E-05 1E-09 72.3 9.5 22 119-140 23-44 (243)
453 PTZ00243 ABC transporter; Prov 97.9 2.1E-05 4.6E-10 93.0 8.4 37 116-153 683-719 (1560)
454 cd03243 ABC_MutS_homologs The 97.9 4.8E-05 1E-09 70.4 9.0 26 118-143 28-53 (202)
455 PF05621 TniB: Bacterial TniB 97.9 0.00015 3.2E-09 70.5 12.4 113 121-252 63-186 (302)
456 PRK10416 signal recognition pa 97.9 0.00027 5.8E-09 70.1 14.3 92 117-210 112-209 (318)
457 COG0488 Uup ATPase components 97.9 2.2E-05 4.8E-10 82.7 6.8 124 115-260 344-500 (530)
458 PRK11889 flhF flagellar biosyn 97.9 0.00034 7.4E-09 70.6 14.6 87 119-210 241-333 (436)
459 TIGR03499 FlhF flagellar biosy 97.9 8.4E-05 1.8E-09 72.5 10.1 82 117-206 192-281 (282)
460 TIGR00064 ftsY signal recognit 97.9 0.00036 7.9E-09 67.7 14.4 90 118-210 71-167 (272)
461 PRK12726 flagellar biosynthesi 97.9 9.5E-05 2.1E-09 74.2 10.4 90 116-210 203-298 (407)
462 PLN03232 ABC transporter C fam 97.8 2.9E-05 6.2E-10 91.7 7.4 30 116-146 640-669 (1495)
463 cd03280 ABC_MutS2 MutS2 homolo 97.8 8.5E-05 1.8E-09 68.6 8.9 31 105-140 18-49 (200)
464 PRK05703 flhF flagellar biosyn 97.8 0.0003 6.6E-09 72.4 13.8 85 117-209 219-311 (424)
465 COG1245 Predicted ATPase, RNas 97.8 2.9E-05 6.3E-10 78.4 6.0 152 102-288 343-530 (591)
466 COG1618 Predicted nucleotide k 97.8 9.8E-05 2.1E-09 65.0 8.5 29 121-149 7-35 (179)
467 cd03240 ABC_Rad50 The catalyti 97.8 9.5E-05 2.1E-09 68.6 8.9 21 118-139 22-42 (204)
468 PRK08727 hypothetical protein; 97.8 0.0002 4.2E-09 67.9 11.0 95 119-255 41-135 (233)
469 cd01128 rho_factor Transcripti 97.8 7.2E-05 1.6E-09 71.5 8.1 102 105-210 5-116 (249)
470 TIGR01026 fliI_yscN ATPase Fli 97.8 0.00011 2.5E-09 75.6 9.9 110 97-210 144-266 (440)
471 PRK06002 fliI flagellum-specif 97.8 2.6E-05 5.7E-10 80.0 5.0 60 97-160 146-205 (450)
472 PF13173 AAA_14: AAA domain 97.8 0.00019 4.1E-09 61.3 9.5 99 119-257 2-100 (128)
473 PF05729 NACHT: NACHT domain 97.7 0.00029 6.2E-09 62.0 10.8 121 120-254 1-128 (166)
474 PRK08181 transposase; Validate 97.7 0.00015 3.3E-09 70.0 9.6 77 117-210 104-180 (269)
475 PRK10867 signal recognition pa 97.7 0.00037 8E-09 71.7 12.8 90 119-210 100-196 (433)
476 PRK14974 cell division protein 97.7 0.00087 1.9E-08 66.8 15.1 90 118-210 139-235 (336)
477 PRK12724 flagellar biosynthesi 97.7 0.00032 6.9E-09 71.5 12.1 85 116-209 220-311 (432)
478 PRK12377 putative replication 97.7 0.00015 3.3E-09 69.3 9.2 106 120-257 102-207 (248)
479 PRK07196 fliI flagellum-specif 97.7 4.2E-05 9.2E-10 78.4 5.7 47 97-147 136-182 (434)
480 KOG0054 Multidrug resistance-a 97.7 7.8E-05 1.7E-09 85.4 8.3 30 116-145 544-573 (1381)
481 COG2401 ABC-type ATPase fused 97.7 0.00022 4.8E-09 71.5 10.2 29 116-145 406-434 (593)
482 PTZ00454 26S protease regulato 97.7 0.00017 3.8E-09 73.6 9.9 123 115-259 175-297 (398)
483 cd03279 ABC_sbcCD SbcCD and ot 97.7 5.9E-05 1.3E-09 70.4 5.9 24 117-140 26-49 (213)
484 KOG2355 Predicted ABC-type tra 97.7 9.4E-05 2E-09 67.6 6.8 44 115-159 36-79 (291)
485 TIGR03015 pepcterm_ATPase puta 97.7 0.00028 6.1E-09 67.8 10.6 94 115-210 38-136 (269)
486 TIGR00767 rho transcription te 97.7 7.9E-05 1.7E-09 75.3 6.8 103 104-210 156-268 (415)
487 PF01695 IstB_IS21: IstB-like 97.7 6.5E-05 1.4E-09 68.2 5.6 78 116-210 44-121 (178)
488 PRK06793 fliI flagellum-specif 97.7 0.00012 2.5E-09 75.2 7.8 140 98-260 138-290 (432)
489 PRK09183 transposase/IS protei 97.7 0.00024 5.3E-09 68.4 9.7 41 116-156 99-139 (259)
490 PRK12727 flagellar biosynthesi 97.7 0.0011 2.3E-08 69.4 14.9 88 115-210 346-441 (559)
491 PRK06893 DNA replication initi 97.7 0.0004 8.7E-09 65.6 10.9 37 120-156 40-76 (229)
492 PRK06921 hypothetical protein; 97.7 0.00047 1E-08 66.7 11.5 39 118-156 116-155 (266)
493 TIGR00959 ffh signal recogniti 97.7 0.00071 1.5E-08 69.6 13.4 90 119-210 99-195 (428)
494 cd03227 ABC_Class2 ABC-type Cl 97.6 0.00047 1E-08 61.4 10.6 120 118-257 20-142 (162)
495 PRK06526 transposase; Provisio 97.6 0.00013 2.9E-09 70.0 7.4 78 116-210 95-172 (254)
496 PTZ00361 26 proteosome regulat 97.6 0.00021 4.5E-09 73.7 9.3 123 115-259 213-335 (438)
497 PRK09099 type III secretion sy 97.6 0.00015 3.3E-09 74.5 8.2 110 97-210 144-266 (441)
498 PRK00771 signal recognition pa 97.6 0.0024 5.2E-08 65.9 16.9 88 118-210 94-188 (437)
499 KOG0744 AAA+-type ATPase [Post 97.6 6.6E-05 1.4E-09 72.8 5.0 132 116-261 174-312 (423)
500 cd03284 ABC_MutS1 MutS1 homolo 97.6 0.00024 5.3E-09 66.5 8.6 21 120-140 31-51 (216)
No 1
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=3.7e-57 Score=444.39 Aligned_cols=324 Identities=61% Similarity=0.972 Sum_probs=304.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.++|..++.+|++.||++++|++++. ....+..+|||++.||.+||+||||+|.+++|+|+||+||||||++++.++
T Consensus 6 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 6 EKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEcccc-cccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999999999999974 334789999999999999988999999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
++.++.++|||+|.++++.+++.+|++++++.+.+|.+.++.++.+..+++++.+++|||||++++.+..++++++++.+
T Consensus 85 ~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~ 164 (349)
T PRK09354 85 QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH 164 (349)
T ss_pred HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999899999999999999998788888877776
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.++|.+++.|+.|...+++++||+|++||++..++. +|++| ..|.||+++.|++.+++.++|...++.++...|++
T Consensus 165 ~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~-~~g~p-e~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~~ 242 (349)
T PRK09354 165 VGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNR 242 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeecccc-ccCCC-CcCCCchhhHhhheeeeEEecccccccCCceecce
Confidence 77888999999999999999999999999999998875 56666 67899999999999999999998888888888999
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
+.++++|||..||++.+.|.|.|+.||++..+++++|.++|+|.++|+||+|.++++ ||++.+..||++||+++++|+.
T Consensus 243 ~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~~~~d~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~ 322 (349)
T PRK09354 243 TKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEIEK 322 (349)
T ss_pred EEEEEEecccCCCCCceEEEEEcCCccchhhhHHHHHHhCCcEEcccCEEEECCceecCcHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhcc
Q 014268 383 KLREKLVV 390 (427)
Q Consensus 383 ~i~~~~~~ 390 (427)
+++..+..
T Consensus 323 ~~~~~~~~ 330 (349)
T PRK09354 323 KIREKLGL 330 (349)
T ss_pred HHHHHhcC
Confidence 99999865
No 2
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=4.8e-57 Score=440.79 Aligned_cols=321 Identities=60% Similarity=0.957 Sum_probs=301.7
Q ss_pred HHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 66 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
+++|..++.+|++.||++++|++++. ....+..+|||++.||.+||+||||+|.+++|+||||+||||||++++.++++
T Consensus 3 ~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~ 81 (325)
T cd00983 3 QKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK 81 (325)
T ss_pred hHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999974 45679999999999999998899999999999999999999999999999999
Q ss_pred cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHH
Q 014268 146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (427)
Q Consensus 146 ~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~ 225 (427)
.++.++|||.|+.+++.+++.+|++++++.+.+|.+.++.++.+..+++++.+++|||||++++.+..++++++++.+.+
T Consensus 82 ~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~ 161 (325)
T cd00983 82 LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG 161 (325)
T ss_pred cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchH
Confidence 99999999999999999999999999999999999999999999999888999999999999999877888877776667
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEE
Q 014268 226 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIA 305 (427)
Q Consensus 226 ~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~ 305 (427)
.++|.+++.|+.|...+++++||+|++||++..++. +|++| ..|.||++++|++.+++.++|....+++++..|+++.
T Consensus 162 ~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~-~~g~~-e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~~~ 239 (325)
T cd00983 162 LQARLMSQALRKLTGSINKSNTTVIFINQLREKIGV-MFGNP-ETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRTK 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-ccCCC-ccCCCchHHhhhcceEEEEEeecccccCCcccccEEE
Confidence 888999999999999999999999999999998876 56655 7899999999999999999999988988888899999
Q ss_pred EEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHH
Q 014268 306 VKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKL 384 (427)
Q Consensus 306 l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~~i 384 (427)
++++|||..||++.+.|.|.|+.||++..+++++|.++|+|.++|+||+|.++++ ||++.+..||++||+++++|+.++
T Consensus 240 ~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~~~ 319 (325)
T cd00983 240 VKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEKKV 319 (325)
T ss_pred EEEEecccCCCCCceEEEEEcCcccchhhhHHHHHHhCCcEEcCCCEEEECCceeccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHhc
Q 014268 385 REKLV 389 (427)
Q Consensus 385 ~~~~~ 389 (427)
++.+.
T Consensus 320 ~~~~~ 324 (325)
T cd00983 320 REKLG 324 (325)
T ss_pred HHHhc
Confidence 98764
No 3
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=100.00 E-value=1.4e-57 Score=442.94 Aligned_cols=320 Identities=61% Similarity=0.958 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc
Q 014268 67 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (427)
Q Consensus 67 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~ 146 (427)
++|..++++|++.||++++|++++......+..+|||++.||.+||.||+|+|.+++|+|++|+|||||+++++.++++.
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~ 80 (322)
T PF00154_consen 1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ 80 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence 47899999999999999999999864467889999999999999988999999999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHH
Q 014268 147 GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 226 (427)
Q Consensus 147 ~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~ 226 (427)
+..|+|||.|..+++.+++.+|++++++.+.+|.+.++.++.+..+++.+.+++|||||+.++.|..++++++++.+.+.
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~ 160 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL 160 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEE
Q 014268 227 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 306 (427)
Q Consensus 227 ~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l 306 (427)
++|.|+++||.+...+.+.+|++|++||++.+++. +|++| ..++||++|.|+|++|+.+.|.+.++++++..|+.+.+
T Consensus 161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~-~~g~~-~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~v 238 (322)
T PF00154_consen 161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGV-MFGNP-ETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKV 238 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSS-SSSSS-SCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhh-ccCCC-cCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEE
Confidence 99999999999999999999999999999999987 68777 57789999999999999999998889888889999999
Q ss_pred EEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHH
Q 014268 307 KIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLR 385 (427)
Q Consensus 307 ~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~~i~ 385 (427)
+++|||++||++.+.+.|.|+.||++..+++++|.++|+|.++|+||+|+++++ ||++.+.+||++||+++++|+.+|+
T Consensus 239 kv~KnKva~P~k~a~~~i~y~~Gid~~~~lldla~~~giI~ksG~wy~y~~e~~gqG~~~~~~~L~en~e~~~ei~~~ir 318 (322)
T PF00154_consen 239 KVVKNKVAPPFKKAEFDIYYGRGIDRESELLDLAVELGIIKKSGSWYSYNGEKIGQGRENAKKYLKENPELAEEIEQKIR 318 (322)
T ss_dssp EEEEESSS-TTEEEEEEEETTTEE-HHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEcccCCCcceeEEEEecCCeECccchHHHHHHHcChhhccCceEEECCcEecccHHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHh
Q 014268 386 EKL 388 (427)
Q Consensus 386 ~~~ 388 (427)
+++
T Consensus 319 ~~~ 321 (322)
T PF00154_consen 319 EKL 321 (322)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
No 4
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=3e-56 Score=434.97 Aligned_cols=319 Identities=60% Similarity=0.959 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 65 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+.++|..++.+|++.||++++|++++. ....+.++|||++.||.+||+||||+|.+++|+||||+||||||++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 2 KQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred hHHHHHHHHHHHHHHcCcceeEECccc-ccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999963 4557899999999999999888999999999999999999999999999999
Q ss_pred hcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhH
Q 014268 145 RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM 224 (427)
Q Consensus 145 ~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~ 224 (427)
+.++.|+|||.|..+++.+++.+|++++++.+.++.+.++.++.+..+++.+.+++|||||++++.+..++++++++.+.
T Consensus 81 ~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~ 160 (321)
T TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160 (321)
T ss_pred HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccch
Confidence 99999999999999999999999999999999999999999999998888899999999999999987888887777666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceE
Q 014268 225 AMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 304 (427)
Q Consensus 225 ~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~ 304 (427)
+.++|.+++.|+.|...++++|||+|++||++..++. +|++| ..+.||+++.|++.+++.++|....+.++...|+++
T Consensus 161 ~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~-~~~~~-e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~ 238 (321)
T TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGV-MFGNP-ETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRT 238 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCc-ccCCC-ccCcCccHHHHHHhHhHhhhhhhccccCCceeccEE
Confidence 7788889999999999999999999999999998876 46555 679999999999999999999888888888889999
Q ss_pred EEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHH
Q 014268 305 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIK 383 (427)
Q Consensus 305 ~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~~ 383 (427)
.++++|||..||++.++|.|.|+.||++..+++++|.++|+|.++|+||+|.++++ ||++.+..||++||+++++|+.+
T Consensus 239 ~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~~ 318 (321)
T TIGR02012 239 KVKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQGRENAKAYLKENPELAQEIEKK 318 (321)
T ss_pred EEEEEECCCCCCCCceEEEEEcCCccchhhHHHHHHHhCCcEEcccCEEEECCcEecccHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHH
Q 014268 384 LRE 386 (427)
Q Consensus 384 i~~ 386 (427)
+++
T Consensus 319 ~~~ 321 (321)
T TIGR02012 319 VRE 321 (321)
T ss_pred HhC
Confidence 873
No 5
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-41 Score=338.04 Aligned_cols=298 Identities=16% Similarity=0.187 Sum_probs=233.2
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHhcC
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 81 (427)
|+||+++|++|+||.. +..+...++...........+++++..+.........++.++.+++.+++++|++.+.
T Consensus 99 ~~iv~e~s~~R~Li~~------~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 172 (435)
T COG0305 99 AKIVKEKALLRELIEA------GNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETMDEIEARFE 172 (435)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhc
Confidence 7899999999999998 7777776776421111233344444444444445566789999999999999999987
Q ss_pred CCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCC
Q 014268 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD 160 (427)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~ 160 (427)
. .. +.|+||||++||.+++ |+++|++++++|+||+|||+||++++.+++.. ..+|++||+||+.+
T Consensus 173 ~-----------~~-~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~e 238 (435)
T COG0305 173 N-----------GG-LIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEE 238 (435)
T ss_pred c-----------CC-CcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHH
Confidence 4 22 8999999999999998 89999999999999999999999999999864 56799999999988
Q ss_pred HHHHHHh----ccccCcc-------------------------ccC--CCCCHHHHHHHHHHHHhcCCccEEEEeccccc
Q 014268 161 PSLAETI----GVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 161 ~~~~~~i----g~~~~~l-------------------------~~~--~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l 209 (427)
+...+.+ +++..++ ++. ...+..++...++++.+++++++++|||+|.|
T Consensus 239 ql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm 318 (435)
T COG0305 239 QLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLM 318 (435)
T ss_pred HHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEee
Confidence 5544333 3332211 121 12367788888999999999999999999999
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccC-----CceeeeecceE
Q 014268 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG-----GNALKFYASVR 284 (427)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~g-----G~~ie~~ad~v 284 (427)
.... ....+.++++...+.|+..++++++|||++||+++.+++ +.+++|.. ..+|||+||+|
T Consensus 319 ~~~~---------~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~----R~dkrP~lSDLRESGsIEQDAD~V 385 (435)
T COG0305 319 TGGK---------KSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQ----RTDKRPMLSDLRESGALEQDADIV 385 (435)
T ss_pred cccc---------cchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchh----ccccCCccccCccCCchhhhCCEE
Confidence 8411 113566777777777777778889999999999999998 55556622 23899999999
Q ss_pred EEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 285 LNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 285 i~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
+|+||+++|.++.+..|. .+++|.|||+||. +++.+.|.+++.+|.++
T Consensus 386 mflyRde~y~~~~~~~g~-aeiIi~K~RnGp~---GtV~l~f~~~~~~F~~~ 433 (435)
T COG0305 386 IFLHRDEAYLKDTPDRGE-AEVIVAKNRNGPT---GTVKLAFDPQFTKFKNL 433 (435)
T ss_pred EEEechhhccCCCCCCce-EEEEEEeccCCCC---ceEEEEEeccccccccc
Confidence 999999999987766564 4999999999999 57889999999988763
No 6
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.3e-38 Score=326.37 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=212.9
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCCcc--cccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG--EENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|++|++++++|+++.. +.+++..++..+.....++.++++........... ...+..+.+++.++++.|++.
T Consensus 123 a~iV~e~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 196 (471)
T PRK08006 123 ADIVRERAVVREMISV------ANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDEGPKNIADILDATVARIEQL 196 (471)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccCCCCCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999997 66666655543211222233333322222111111 123556677999999999876
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
+.. ....+.|+||||++||.+++ ||++|++++|+|+||+|||+||++++.+++. .+.+|+|||+||+
T Consensus 197 ~~~----------~~~~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 197 FQQ----------PHDGVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred Hhc----------CCCCCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 532 22357899999999999997 9999999999999999999999999999874 5778999999999
Q ss_pred CCHHHHHH----hccccC--------------------------ccccCC--CCCHHHHHHHHHHHHhcC-CccEEEEec
Q 014268 159 LDPSLAET----IGVKTE--------------------------NLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDS 205 (427)
Q Consensus 159 ~~~~~~~~----ig~~~~--------------------------~l~~~~--~~~~~~~~~~~~~l~~~~-~~~lvvIDs 205 (427)
.++...+. .++... ++++.+ ..+..++...++++...+ ++++|||||
T Consensus 265 ~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDY 344 (471)
T PRK08006 265 GEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDY 344 (471)
T ss_pred HHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 87433222 222211 122222 246788888888877665 699999999
Q ss_pred ccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeee
Q 014268 206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFY 280 (427)
Q Consensus 206 l~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ 280 (427)
++.+..... . . .+..+++...+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+
T Consensus 345 Lqli~~~~~-~---~-----~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~----r~dkrP~lsDLreSG~IEqd 411 (471)
T PRK08006 345 LQLMRVPSL-S---D-----NRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQ----RADKRPVNSDLRESGSIEQD 411 (471)
T ss_pred HHHccCCCC-C---C-----CcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc----cCCCCCchhhhhhcCccccc
Confidence 999863211 1 1 122345555555666666679999999999999876 4444552 23489999
Q ss_pred cceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 281 ASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 281 ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
||+|+||||+++|..+.+..|. .+++|+|||+||+ +++.+.|...+.+|.++
T Consensus 412 AD~v~~l~R~~~y~~~~~~~g~-~elivaKnR~G~~---G~v~l~f~~~~~~f~~~ 463 (471)
T PRK08006 412 ADLIMFIYRDEVYHENSDLKGI-AEIIIGKQRNGPI---GTVRLTFNGQWSRFDNY 463 (471)
T ss_pred CCEEEEEecccccccccCCCCc-eEEEEecccCCCC---ceEEEEEccCcccccCC
Confidence 9999999999988765444454 5999999999999 57888999998888653
No 7
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=4.1e-38 Score=325.42 Aligned_cols=299 Identities=17% Similarity=0.196 Sum_probs=215.3
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCC--cccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSD--SGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||++++++|+++.. +.+++..++..+...+.+.+++++......... .....+..+.+++.++++.++++
T Consensus 129 a~iV~e~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (476)
T PRK08760 129 AEIVRDKAVLRQLIEV------GTTIVNDGFQPEGRESIELLASAEKAVFKIAEAGARGRTDFVAMPGALKDAFEELRNR 202 (476)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhccccccCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999997 666665555432112223333333333222111 12234666778999999999887
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
+.. .....|+|||+..||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.+|+||++||+
T Consensus 203 ~~~-----------~~~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 203 FEN-----------GGNITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred HhC-----------CCCCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 653 2357899999999999997 8999999999999999999999999999875 4778999999999
Q ss_pred CCHHHHHH----hccccC-------------------------ccccCC--CCCHHHHHHHHHHHHhcCCccEEEEeccc
Q 014268 159 LDPSLAET----IGVKTE-------------------------NLLLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (427)
Q Consensus 159 ~~~~~~~~----ig~~~~-------------------------~l~~~~--~~~~~~~~~~~~~l~~~~~~~lvvIDsl~ 207 (427)
..+...+. .+++.. ++++.+ ..+++++...++++...+++++|||||++
T Consensus 270 ~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLq 349 (476)
T PRK08760 270 ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQ 349 (476)
T ss_pred HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 87433322 222211 112222 24678888889988888889999999999
Q ss_pred ccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecc
Q 014268 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYAS 282 (427)
Q Consensus 208 ~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad 282 (427)
.+..... . . .+..+++...+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+||
T Consensus 350 l~~~~~~-----~-~---~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~----r~~krP~lsDLreSg~IeqdAD 416 (476)
T PRK08760 350 LMSVPGN-----S-E---NRATEISEISRSLKGLAKELNVPVIALSQLNRSLET----RTDKRPVMADLRESGAIEQDAD 416 (476)
T ss_pred hcCCCCC-----C-c---ccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccc----cCCCCCCHHHHhhccchhcCCC
Confidence 9863111 1 1 122345555555666666689999999999999876 3444552 2448999999
Q ss_pred eEEEEEeccccccC-cccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 283 VRLNIKRIGLVKKG-EETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 283 ~vi~L~r~~~~~~~-~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
+|++|||+++|..+ .+..+ ..+++|+|||+||+ +++.+.|...+.+|.++
T Consensus 417 ~vl~l~R~~~y~~~~~~~~~-~~eliiaKnR~G~~---g~~~l~f~~~~~~f~~~ 467 (476)
T PRK08760 417 MIVFIYRDDYYNKENSPDKG-LAEIIIGKHRGGPT---GSCKLKFFGEYTRFDNL 467 (476)
T ss_pred EEEEEechhhcccccccCCC-ceEEEEEccCCCCC---ceEEEEEecCCCceecc
Confidence 99999999988754 33334 35999999999999 57899999999988763
No 8
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=6.2e-38 Score=325.11 Aligned_cols=298 Identities=16% Similarity=0.167 Sum_probs=217.4
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchh-hhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHhc
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETS-TQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSF 80 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~ 80 (427)
|+||++++++|+|+.. +.++...++.+.. ..+.++.++++..............+..+.+++..+++.|++..
T Consensus 166 a~iVke~a~~R~li~~------~~~i~~~~~~~~~~~~~~~~i~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~ 239 (505)
T PRK05636 166 AEIVSEKAVLRRLVDA------GTRVVQLGYEGDEGAEIDSVIDRAQQEVFAVSQKNQSEDYAVLADILDPTMDELEMLS 239 (505)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHH
Confidence 7899999999999997 5555555554321 12333344444433333222333356667778999999998764
Q ss_pred CCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCCC
Q 014268 81 GKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL 159 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~~ 159 (427)
.. .....|+||||..||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.+|+|||+||+.
T Consensus 240 ~~-----------~~~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 240 SQ-----------GGIATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred hC-----------CCCCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 42 2357899999999999987 9999999999999999999999999998774 57789999999997
Q ss_pred CHHHHH----HhccccC-------------------------ccccCC--CCCHHHHHHHHHHHHhcCCccEEEEecccc
Q 014268 160 DPSLAE----TIGVKTE-------------------------NLLLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVAA 208 (427)
Q Consensus 160 ~~~~~~----~ig~~~~-------------------------~l~~~~--~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~ 208 (427)
.+...+ ..++.+. ++++.+ ..++.++...++++...+++++||||||+.
T Consensus 307 ~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql 386 (505)
T PRK05636 307 SEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQL 386 (505)
T ss_pred HHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHh
Confidence 743322 2223221 122222 246788888898888888899999999999
Q ss_pred cCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecce
Q 014268 209 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYASV 283 (427)
Q Consensus 209 l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad~ 283 (427)
|.+.... . .+..++....+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+||+
T Consensus 387 ~~~~~~~------~---~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~----r~dkrP~lsDLreSG~IEqdAD~ 453 (505)
T PRK05636 387 MSSGKRV------E---SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPES----RTDKRPQLADLRESGSLEQDADM 453 (505)
T ss_pred cCCCCCC------C---cHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccc----cCCCCCcHHHHhhcccccccCCE
Confidence 8631110 1 223456666666666667789999999999999876 3444452 23489999999
Q ss_pred EEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 284 RLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 284 vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
+++|+|.++|.++++..|. .+++|+|||+||+ +++.+.|...+.+|.+
T Consensus 454 vl~l~R~~~y~~~~~~~g~-~elivaK~RnG~~---Gtv~l~f~~~~~rF~~ 501 (505)
T PRK05636 454 VMLLYRPDSQDKDDERAGE-ADIILAKHRGGPI---DTVQVAHQLHYSRFVD 501 (505)
T ss_pred EEEEecccccCCccCCCCc-eEEEEecCCCCCC---ceEEEEeecCcccccc
Confidence 9999999998765544454 5999999999999 5889999999988875
No 9
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.4e-37 Score=320.11 Aligned_cols=299 Identities=16% Similarity=0.163 Sum_probs=212.0
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCC--cccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSD--SGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||+++|++|+++.. +.++...++......+.+++++++......... .....+..+.+++.++++.|++.
T Consensus 116 a~iVke~s~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (464)
T PRK08840 116 ADIVAERALVRNLIGV------ANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSENEGPQNVDSILEKTLERIELL 189 (464)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccCcCCCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999997 555555554422112222333333322221111 11134556677899999999876
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
... ....+.|+||||+.||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.+|+|||+||+
T Consensus 190 ~~~----------~~~~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 190 YKT----------PQDGVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred Hhc----------CCCCCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 532 12357899999999999997 9999999999999999999999999999874 5778999999999
Q ss_pred CCHHHHH----HhccccC--------------------------ccccCC--CCCHHHHHHHHHHHHhcC-CccEEEEec
Q 014268 159 LDPSLAE----TIGVKTE--------------------------NLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDS 205 (427)
Q Consensus 159 ~~~~~~~----~ig~~~~--------------------------~l~~~~--~~~~~~~~~~~~~l~~~~-~~~lvvIDs 205 (427)
.++...+ ..+++.. ++++.+ ..++.++...++++...+ ++++|||||
T Consensus 258 ~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDY 337 (464)
T PRK08840 258 AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDY 337 (464)
T ss_pred HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 8743322 2233211 122222 246788888888876654 589999999
Q ss_pred ccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeee
Q 014268 206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFY 280 (427)
Q Consensus 206 l~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ 280 (427)
++.+..... . . .+..+++...+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+
T Consensus 338 Lql~~~~~~-~---~-----~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~----r~~krP~lsDLreSG~IEqd 404 (464)
T PRK08840 338 LQLMRVPAL-S---D-----NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQ----RADKRPVNSDLRESGSIEQD 404 (464)
T ss_pred HHhcCCCCC-C---C-----chHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc----cCCCCCchHhhhhccccccc
Confidence 999863211 1 1 122345555566666666689999999999999876 4444552 23489999
Q ss_pred cceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 281 ASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 281 ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
||++++|+|+++|....+..+. .+++|+|||+||+ +++.+.|...+.+|.+
T Consensus 405 AD~v~~l~R~~~y~~~~~~~~~-~elivaKnR~G~~---G~v~l~f~~~~~~f~~ 455 (464)
T PRK08840 405 ADLIMFIYRDEVYNPDSPLKGT-AEIIIGKQRNGPI---GSVRLTFQGQYSRFDN 455 (464)
T ss_pred CCEEEEEecccccCCCcCCCCc-eEEEEecccCCCC---ceEEEEEecCcccccC
Confidence 9999999999998765444443 5999999999999 5788899899888865
No 10
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-37 Score=292.69 Aligned_cols=270 Identities=56% Similarity=0.914 Sum_probs=238.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+..+++......+++.++++.++.+........+..+|||...||.+|| ||+|.|.+++|+||+||||||+|++++.++
T Consensus 6 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~a 84 (279)
T COG0468 6 DEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVANA 84 (279)
T ss_pred hhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHHh
Confidence 4455788888888988998887776432234569999999999999999 999999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccc-cCccccCCCCCHHHHHHHHHHHHhcCC--ccEEEEecccccCCCCccCCccc
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVK-TENLLLAQPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEMG 220 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~-~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~lvvIDsl~~l~~~~~~~~~~g 220 (427)
+++++.++|+|+|+.+++.+++.++.+ .+++++.++.+.++.+.++..+..... +++|||||++++++.....
T Consensus 85 q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~---- 160 (279)
T COG0468 85 QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE---- 160 (279)
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----
Confidence 999999999999999999999999999 999999999999999999888877666 9999999999999744433
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccc
Q 014268 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 300 (427)
Q Consensus 221 ~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~ 300 (427)
+.....++|.+++.++.|...+++++++||++||++.+++. +|++| .+|.||+++.|++.+++.+.|....+ .+ .
T Consensus 161 d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~-~f~~~-~~~~GG~~L~~~as~rl~l~k~~~~~-~~--~ 235 (279)
T COG0468 161 DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV-MFGDP-ETTTGGNALKFYASVRLDLRRIESLK-ED--V 235 (279)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc-ccCCc-ccCCCchHHHhhhheEEEEeeccccc-cc--c
Confidence 24467889999999999999999999999999999999987 66666 78999999999999999999986555 22 6
Q ss_pred cceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhc
Q 014268 301 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKH 343 (427)
Q Consensus 301 g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~ 343 (427)
+.++.++++||++.||+..+.|+|+|+.+++...++.+++...
T Consensus 236 g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~ 278 (279)
T COG0468 236 GNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQ 278 (279)
T ss_pred CCeEEEEEEeCCCCCCCceeEEEeecCcccccccchhhhhhcc
Confidence 7788999999999999999999999999999988888877654
No 11
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.3e-38 Score=321.79 Aligned_cols=301 Identities=17% Similarity=0.213 Sum_probs=216.1
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCC--cccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSD--SGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||+++|++|+++.. +.++...++..+..++.++.++++......... .....+..+.+++.++++.+++.
T Consensus 111 a~iV~e~~~~R~li~~------~~~i~~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (460)
T PRK07004 111 AEIVRDRAVLRRLVSV------ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGTQGFLEIGPLLTQVVERIDTL 184 (460)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhccCcCCHHHHHHHHHHHHHHHHcccCcCcCcchhHHHHHHHHHHHHHHH
Confidence 7899999999999997 666655555432112223333333322222111 12235667788999999999876
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
+... ......|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.+|+|||+||+
T Consensus 185 ~~~~---------~~~~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 185 YHTA---------NPSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred Hhcc---------ccCCCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4421 23457899999999999997 9999999999999999999999999998864 5789999999999
Q ss_pred CCHHHHHHh----ccccCc-------------------------cccCC--CCCHHHHHHHHHHHHhcC-CccEEEEecc
Q 014268 159 LDPSLAETI----GVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSV 206 (427)
Q Consensus 159 ~~~~~~~~i----g~~~~~-------------------------l~~~~--~~~~~~~~~~~~~l~~~~-~~~lvvIDsl 206 (427)
..+...+.+ +++..+ +++.+ ..++.++...++++.+.. ++++|||||+
T Consensus 254 ~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYL 333 (460)
T PRK07004 254 GTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYL 333 (460)
T ss_pred HHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChh
Confidence 875433332 222211 12221 236778888888877654 5899999999
Q ss_pred cccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeec
Q 014268 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYA 281 (427)
Q Consensus 207 ~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~a 281 (427)
+.+.+... ++ .+..+++...+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+|
T Consensus 334 ql~~~~~~-----~~----~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~----r~~krP~lsDLreSg~IeqdA 400 (460)
T PRK07004 334 QLMSGSSQ-----GE----NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQ----RPNKRPVMSDLRESGAIEQDA 400 (460)
T ss_pred hhccCCCC-----CC----cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhc----cCCCCCChHHHhcchhhhhcC
Confidence 99973211 11 233455666666666667789999999999999876 4445552 234899999
Q ss_pred ceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 282 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 282 d~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
|+|++|+|+++|..+.+..|. .+++|+|||+||+ +++.+.|...+.+|.++
T Consensus 401 D~v~~l~R~~~y~~~~~~~g~-~e~ivaKnR~G~~---G~v~l~f~~~~~~F~~~ 451 (460)
T PRK07004 401 DVILFIYRDEVYNPDSPDKGT-AEIIIGKQRNGPI---GPVRLTFLGQYTKFDNF 451 (460)
T ss_pred CEEEEeccccccCCCcCCCCc-eEEEEEccCCCCC---ceEEEEEecCCCcccCC
Confidence 999999999998765444454 5999999999999 57899999999888763
No 12
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=4.5e-37 Score=317.17 Aligned_cols=300 Identities=17% Similarity=0.200 Sum_probs=209.6
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCC--cccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSD--SGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||++++++|+++.. +.++...++..+...+.+..++++......... .....+..+.+++.++++.+++.
T Consensus 119 a~iVke~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (472)
T PRK06904 119 ADIVREKAILRELISV------GNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANEGPQNVINLLENTIDKIENL 192 (472)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhcCccCCHHHHHHHHHHHHHHHHhhcccccCCceeHHHHHHHHHHHHHHH
Confidence 6899999999999997 555555555432112222333333222222111 11124556677899999988864
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
.... ......|+||||+.||.+++ ||++|++++|+|+||+|||+|+++++.+++. .+.+|+|||+||+
T Consensus 193 ~~~~---------~~~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 193 AATP---------TNNGVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred Hhhc---------cCCCCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3110 22367899999999999997 9999999999999999999999999999875 4788999999999
Q ss_pred CCHHHHHH----hccccC---------------------------ccccCC--CCCHHHHHHHHHHHHhc-CCccEEEEe
Q 014268 159 LDPSLAET----IGVKTE---------------------------NLLLAQ--PDCGEQALSLVDTLIRS-GSVDVVVVD 204 (427)
Q Consensus 159 ~~~~~~~~----ig~~~~---------------------------~l~~~~--~~~~~~~~~~~~~l~~~-~~~~lvvID 204 (427)
.++...+. .+++.. ++++.+ ..+..++...++++... +++++||||
T Consensus 262 ~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 341 (472)
T PRK06904 262 AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVD 341 (472)
T ss_pred HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 87433222 222211 122222 24677888888877655 469999999
Q ss_pred cccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeee
Q 014268 205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKF 279 (427)
Q Consensus 205 sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~ 279 (427)
||+.+.... .. . .+..+++...+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|
T Consensus 342 YLqli~~~~-~~-----~---~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~----r~~krP~lsDLreSG~IEq 408 (472)
T PRK06904 342 YLQLMRAPG-FE-----D---NRTLEIAEISRSLKALAKELKVPVVALSQLNRTLEN----RGDKRPVNSDLRESGSIEQ 408 (472)
T ss_pred cHHhcCCCC-CC-----C---cHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhc----cCCCCCchHHHhhcCcccc
Confidence 999986321 11 1 122344455555555556679999999999999876 4444552 2348999
Q ss_pred ecceEEEEEeccccccCccc-ccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 280 YASVRLNIKRIGLVKKGEET-IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 280 ~ad~vi~L~r~~~~~~~~~~-~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
+||+|++|+|+++|....+. .+ ..+++|+|||+||+ +.+.+.|...+.+|.+
T Consensus 409 dAD~v~~l~R~~~y~~~~~~~~~-~~elivaKnR~G~~---G~v~l~f~~~~~~f~~ 461 (472)
T PRK06904 409 DADLIMFIYRDEVYNETTEDNKG-VAEIIIGKQRNGPI---GRVRLAFQGQYSRFDN 461 (472)
T ss_pred CCcEEEEEeccccccCccccCCC-ceEEEEeccCCCCC---ceEEEEEccCCCCccc
Confidence 99999999999988754322 34 45999999999999 5788999999988875
No 13
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=8.3e-37 Score=314.80 Aligned_cols=295 Identities=17% Similarity=0.191 Sum_probs=213.1
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccc--hhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLE--TSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|++|++++++|+++.. +.+....++.. +..++++ .++..............+..+.+++...++.+++.
T Consensus 104 a~iVke~~~~R~l~~~------~~~~~~~~~~~~~~~~~~l~---~~e~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (444)
T PRK05595 104 IKIVKDKSTLRRLIKS------STEIIENSYNNQDDVEKVID---SAEKKIFDISEKRTTSDFEPLSNVLERGFEQIENL 174 (444)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccCCCHHHHHH---HHHHHHHHHHhccCCccceeHHHHHHHHHHHHHHH
Confidence 6899999999999986 44444443332 2233333 33332322222222334666778999999999887
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E~~ 158 (427)
+.. .....|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++ ..+.+|+||++||+
T Consensus 175 ~~~-----------~~~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 175 FNN-----------KGETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred HhC-----------CCCCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 653 2357899999999999997 999999999999999999999999999865 56889999999998
Q ss_pred CCHH----HHHHhccccCcc-------------------------ccCC--CCCHHHHHHHHHHHHhcCCccEEEEeccc
Q 014268 159 LDPS----LAETIGVKTENL-------------------------LLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (427)
Q Consensus 159 ~~~~----~~~~ig~~~~~l-------------------------~~~~--~~~~~~~~~~~~~l~~~~~~~lvvIDsl~ 207 (427)
..+. ++...+++..++ ++.+ ..++.++...++++...+++++|||||++
T Consensus 242 ~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylq 321 (444)
T PRK05595 242 KEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQ 321 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHH
Confidence 7743 233334442221 1211 24577888888888777889999999999
Q ss_pred ccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccC-----Cceeeeecc
Q 014268 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG-----GNALKFYAS 282 (427)
Q Consensus 208 ~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~g-----G~~ie~~ad 282 (427)
.+..... . . .+..++....+.|+..+++++|+||+++|++|.++. +++++|.. +.+|+|+||
T Consensus 322 l~~~~~~-----~-~---~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~----r~~~rP~lsdlr~Sg~Ieq~AD 388 (444)
T PRK05595 322 LMSGGKG-----S-E---SRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQ----RADHRPMLSDLRESGSIEQDAD 388 (444)
T ss_pred hccCCCC-----C-c---cHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhc----cCCCCCchhhhhhhcccccCCC
Confidence 9863111 0 1 122345555555556666689999999999999876 44445522 348999999
Q ss_pred eEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 283 VRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 283 ~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
++++|+|+.+|..+.+..+. .+++|+|||+|++ +++.+.|...+.+|.+
T Consensus 389 ~vl~l~r~~~~~~~~~~~~~-~e~iv~K~R~G~~---g~~~~~~~~~~~~f~~ 437 (444)
T PRK05595 389 VVMFLYRDEYYNKETEDKNV-AECIIAKQRNGPT---GTVKLAWLGQYSKFGN 437 (444)
T ss_pred EEEEEecccccccccCCCCc-eEEEEEccCCCCC---ceEEEEEecCCCcccc
Confidence 99999999988755444454 5999999999999 5788999999888876
No 14
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.3e-36 Score=313.24 Aligned_cols=305 Identities=13% Similarity=0.138 Sum_probs=208.8
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHH----------
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQ---------- 71 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 71 (427)
|+||++++++|+++.. +.+....++... .++.+..++++..............+..+.+++..
T Consensus 112 a~iV~e~~~~R~li~~------~~~~~~~~~~~~-~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (472)
T PRK06321 112 AEIIRSKSILRKMIQT------AKEIEKKALEEP-KDVATALDEAQNLLFKISQTTNLAQYVLVADKLKGLTSSKDKPFL 184 (472)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhccCCCCceEHHHHHhhhhcchhhhHH
Confidence 7899999999999997 555555444421 22333344444333322222222234444445433
Q ss_pred --HHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCc
Q 014268 72 --ALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGG 148 (427)
Q Consensus 72 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~ 148 (427)
+.+.++...... . ......+.|+|||+..||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.
T Consensus 185 ~~~~~~~~~~~~~~-----~-~~~~~~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~ 256 (472)
T PRK06321 185 LQLQERQEAFQQSA-----Q-GDSSPMISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRL 256 (472)
T ss_pred HHHHHHHHHHhhhh-----c-cccCCCCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCC
Confidence 233333211100 0 0023457899999999999998 9999999999999999999999999999874 578
Q ss_pred eEEEEeCCCCCCHHHHH----HhccccCcc-------------------------ccC--CCCCHHHHHHHHHHHHhcCC
Q 014268 149 YCVFIDAEHALDPSLAE----TIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGS 197 (427)
Q Consensus 149 ~vv~is~E~~~~~~~~~----~ig~~~~~l-------------------------~~~--~~~~~~~~~~~~~~l~~~~~ 197 (427)
+|+|||+||+..+...+ ..+++..++ ++. ...++.++...++.+...++
T Consensus 257 ~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~ 336 (472)
T PRK06321 257 PVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYD 336 (472)
T ss_pred eEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 89999999988743332 223332211 122 22467888888888888888
Q ss_pred ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----
Q 014268 198 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC----- 272 (427)
Q Consensus 198 ~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~----- 272 (427)
+++||||||+.+........ . ..+..+++...+.|+..+++++||||+++|++|.++. +++++|.
T Consensus 337 ~~lvvIDyLql~~~~~~~~~--~----~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~----r~~krP~lsDLR 406 (472)
T PRK06321 337 IQFLIIDYLQLLSGSGNLRN--S----ESRQTEISEISRMLKNLARELNIPILCLSQLSRKVED----RANHRPMMSDLR 406 (472)
T ss_pred CCEEEEcchHHcCCCCccCC--c----chHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhc----cCCCCCCHHHHh
Confidence 99999999999863211110 1 1233456666666666667789999999999999876 4445553
Q ss_pred CCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 273 GGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 273 gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
++.+|+|+||++++|||+++|..++ ..+ ..+++|+|||+||+ +++.+.|...+.+|.++
T Consensus 407 eSG~IEqdAD~v~~l~R~~~y~~~~-~~~-~~elivaKnR~G~~---G~v~l~f~~~~~~f~~~ 465 (472)
T PRK06321 407 ESGSIEQDSDLVMFLLRREYYDPND-KPG-TAELIVAKNRHGSI---GSVPLVFEKEFARFRNY 465 (472)
T ss_pred hcccccccCCEEEEEechhhcCCcC-CCC-ceEEEEEecCCCCC---ceEEEEEecCCCcccCc
Confidence 2348999999999999999886433 224 45999999999999 57889999999888753
No 15
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.1e-36 Score=316.69 Aligned_cols=299 Identities=18% Similarity=0.230 Sum_probs=212.8
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccc----hhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHH
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLE----TSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQIT 77 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~ 77 (427)
|+||++++++|+++.. +.++...++.. +..++++.++.....+.... .....+..+.+++..+++.++
T Consensus 117 a~iV~e~~~~R~li~~------~~~i~~~a~~~~~~~~~~~~i~~~~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~ 188 (497)
T PRK09165 117 GRIIYDLALRRELINI------GEDVVNNAYDAPVDVAPQEQIEDAEQKLYELAETG--RYEGGFQSFGTAITEAVDMAN 188 (497)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHhcc--CCCCCceeHHHHHHHHHHHHH
Confidence 7899999999999997 66665555543 22333333332222222111 112245667778999999988
Q ss_pred HhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----------
Q 014268 78 SSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------- 146 (427)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~----------- 146 (427)
..... .....|+|||+++||.++| |+++|++++|+|+||+|||+|+++++.+++..
T Consensus 189 ~~~~~-----------~~~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~ 255 (497)
T PRK09165 189 AAFKR-----------DGHLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSK 255 (497)
T ss_pred HHHhC-----------CCCCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccc
Confidence 76442 2357899999999999997 99999999999999999999999999998753
Q ss_pred ----CceEEEEeCCCCCCHHH----HHHhccccCc-------------------------cccCC--CCCHHHHHHHHHH
Q 014268 147 ----GGYCVFIDAEHALDPSL----AETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDT 191 (427)
Q Consensus 147 ----~~~vv~is~E~~~~~~~----~~~ig~~~~~-------------------------l~~~~--~~~~~~~~~~~~~ 191 (427)
+.+|+||++||+.++.. +...+++..+ +++.+ ..++.++...+++
T Consensus 256 ~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~ 335 (497)
T PRK09165 256 KAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARR 335 (497)
T ss_pred cccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHH
Confidence 57899999999987433 3334554322 12222 2467888888888
Q ss_pred HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeec
Q 014268 192 LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVT 271 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~ 271 (427)
+...+++++|||||++.+..... .. ++ .+..++....+.|+..+++++||||+++|++|.++. +.+++|
T Consensus 336 l~~~~~~~lvvIDyLqli~~~~~-~~--~~----~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~----r~~krP 404 (497)
T PRK09165 336 LKRQHGLDLLVVDYLQLIRGSSK-RS--SD----NRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQ----RDDKRP 404 (497)
T ss_pred HHHhcCCCEEEEcchHhccCCCC-CC--CC----chHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhc----cCCCCC
Confidence 88888899999999999863211 00 11 122345555555555556689999999999999876 333444
Q ss_pred c-----CCceeeeecceEEEEEeccccccCcc-----------------cccceEEEEEeecCCCCCCCeeEEEEEeCCC
Q 014268 272 C-----GGNALKFYASVRLNIKRIGLVKKGEE-----------------TIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 329 (427)
Q Consensus 272 ~-----gG~~ie~~ad~vi~L~r~~~~~~~~~-----------------~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~G 329 (427)
. ++.+|+|+||+|++|||+++|..... ..+ ..+++|+|||+||+ +++.+.|...
T Consensus 405 ~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~ivaKnR~G~~---g~~~~~f~~~ 480 (497)
T PRK09165 405 QLSDLRESGSIEQDADVVMFVYREEYYLKRKEPREGTPKHEEWQEKMEKVHN-KAEVIIAKQRHGPT---GTVKLAFESE 480 (497)
T ss_pred chhhhhhccchhccCCEEEEEeehhhhccccccccccchhhhhhhhhcccCC-ceEEEEeccCCCCC---eeEEEEEecC
Confidence 2 24489999999999999998864210 113 45999999999999 5788999999
Q ss_pred CCchhhH
Q 014268 330 ISRESEI 336 (427)
Q Consensus 330 i~~~~~~ 336 (427)
+.+|.++
T Consensus 481 ~~~f~~~ 487 (497)
T PRK09165 481 FTRFGDL 487 (497)
T ss_pred CCcccCc
Confidence 9888763
No 16
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.6e-36 Score=313.81 Aligned_cols=299 Identities=18% Similarity=0.211 Sum_probs=209.8
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHhcC
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 81 (427)
|++|++++++|+++.. +.++...++..+ ..+.++.++.+..............+..+.+++.++++.+++...
T Consensus 94 a~iV~e~~~~R~li~~------~~~i~~~~~~~~-~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (472)
T PRK08506 94 VEEIKEKSIKRELLSL------ANTIPEQAVEED-QKSSDILDEVERELYSITNGSNSEDFKDSKEVIESTMEHIKKQKR 166 (472)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHh
Confidence 7899999999999997 555555444421 122222333332222222222333566777899999998886543
Q ss_pred CCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH
Q 014268 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 161 (427)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~ 161 (427)
. ......|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++..+.+|+|||+||+..+
T Consensus 167 ~----------~~~~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~q 234 (472)
T PRK08506 167 L----------GNKDIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQ 234 (472)
T ss_pred c----------CCCCCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHH
Confidence 2 12357899999999999987 99999999999999999999999999999888889999999998874
Q ss_pred HH----HHHhccccCc-------------------------cccCC--CCCHHHHHHHHHHHHhc-CCccEEEEeccccc
Q 014268 162 SL----AETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRS-GSVDVVVVDSVAAL 209 (427)
Q Consensus 162 ~~----~~~ig~~~~~-------------------------l~~~~--~~~~~~~~~~~~~l~~~-~~~~lvvIDsl~~l 209 (427)
.. +...++++.+ +++.+ ..++.++...++++... +++++|||||++.+
T Consensus 235 l~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~ 314 (472)
T PRK08506 235 LMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLM 314 (472)
T ss_pred HHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhc
Confidence 33 3223443221 22222 24688888888887665 46899999999998
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecceE
Q 014268 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYASVR 284 (427)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad~v 284 (427)
...... . .+..++....+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+||+|
T Consensus 315 ~~~~~~------~---~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~----r~~krP~lsDLreSg~IeqdAD~v 381 (472)
T PRK08506 315 SGSGNF------K---DRHLQISEISRGLKLLARELDIPIIALSQLNRSLES----RADKRPMLSDLRESGAIEQDADII 381 (472)
T ss_pred cCCCCC------C---CHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhh----ccCCCCChHHhhcchhhhhcCCEE
Confidence 632111 1 122334444455555556679999999999998875 3334442 244899999999
Q ss_pred EEEEeccccccCcc--------ccc-------------ceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 285 LNIKRIGLVKKGEE--------TIG-------------SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 285 i~L~r~~~~~~~~~--------~~g-------------~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
++|+|+++|...++ ..| ...+++|+|||+||+ +++.+.|...+.+|.+
T Consensus 382 l~l~R~~~y~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~---G~v~l~f~~~~~~f~~ 450 (472)
T PRK08506 382 LFVYRDDVYKEREEKEKEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPT---GTVKLRFQKEFTRFVD 450 (472)
T ss_pred EEEecccccccccccccccccccccccccccccccccccceEEEEecCCCCCC---ceEEEEEecCCccccC
Confidence 99999998863110 112 136899999999998 5788999999988865
No 17
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=4e-36 Score=308.29 Aligned_cols=287 Identities=21% Similarity=0.238 Sum_probs=202.8
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCC--CCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDG--SDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|++|++++++|+++.. +.++...++..+..++..+.++++....... .......+..+.+++.++++.+++.
T Consensus 94 a~~v~e~~~~R~l~~~------~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (421)
T TIGR03600 94 ARIVREKAKERKLIAA------CQRIIDLACSDGGQTAEQKVEEAQAALLALTGMSDGQERGFVTFGEVLEDVVRDLDKR 167 (421)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhccCcCCchhHHHHHHHHHHHHHHH
Confidence 6899999999999996 5555544443221122222233332222221 2223335666778999999999876
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E~~ 158 (427)
... .....|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++ ..+.+|+|||+||+
T Consensus 168 ~~~-----------~~~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 168 FNP-----------KGELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred hcC-----------CCCCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 542 2357899999999999998 999999999999999999999999998887 56889999999998
Q ss_pred CCHH----HHHHhccccC-------------------------ccccCC--CCCHHHHHHHHHHHHhcC-CccEEEEecc
Q 014268 159 LDPS----LAETIGVKTE-------------------------NLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSV 206 (427)
Q Consensus 159 ~~~~----~~~~ig~~~~-------------------------~l~~~~--~~~~~~~~~~~~~l~~~~-~~~lvvIDsl 206 (427)
..+. ++...+++.. ++++.+ ..+++++...++++.... ++++|||||+
T Consensus 235 ~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyL 314 (421)
T TIGR03600 235 AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYI 314 (421)
T ss_pred HHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 7743 3333444322 122222 246888888888776654 7999999999
Q ss_pred cccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeec-----cCCceeeeec
Q 014268 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVT-----CGGNALKFYA 281 (427)
Q Consensus 207 ~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~-----~gG~~ie~~a 281 (427)
+.+.+. . +. . +..++....+.|+..+++++||||+++|+++.++. +++++| .++.+|+|+|
T Consensus 315 ql~~~~---~---~~-~---~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~----r~~krp~lsdlr~Sg~Ieq~A 380 (421)
T TIGR03600 315 QLMAPT---R---GR-D---RNEELGGISRGLKALAKELDVPVVLLAQLNRGSEK----RTDKRPIMSDLRDSGAIEQDA 380 (421)
T ss_pred cccCCC---C---CC-C---HHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhh----cCCCCCChHHHhhcCCccccC
Confidence 999742 1 11 1 12344455555555566689999999999998776 333444 2345899999
Q ss_pred ceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEE
Q 014268 282 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELE 325 (427)
Q Consensus 282 d~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~ 325 (427)
|++++|+|+.+|..+.+..+ ..+++|+|||+||+| .+.+.
T Consensus 381 D~v~~l~R~~~~~~~~~~~~-~~el~v~K~R~G~~g---~~~l~ 420 (421)
T TIGR03600 381 DVIGLIHREGYYDAREPPAG-VAELILAKNRHGPTG---TVELL 420 (421)
T ss_pred cEEEEeccccccCCccCCCC-ceEEEEECCCCCCCc---eEEec
Confidence 99999999998875443334 459999999999995 55554
No 18
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=100.00 E-value=2.4e-35 Score=314.27 Aligned_cols=269 Identities=55% Similarity=0.886 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.++|..++.+|++.||++++|.+++. ....+..+|||++.||.+||.|||++|.+++|+|+||+||||||++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a 84 (790)
T PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (790)
T ss_pred HHHHHHHHHHHHHHHHhccchhcccccc-cccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999999999874 456789999999999999976899999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
+..++.|+||++|.++++.+++++|++++++.+.++.+.++++..+..+++++.+++|||||++++.++.++++.++..+
T Consensus 85 ~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~ 164 (790)
T PRK09519 85 QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSH 164 (790)
T ss_pred HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCccc
Confidence 98999999999999999889999999999999999999999999999888888999999999999997788888776655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.+++.+++.|+.|.+.++++|+|+|++||++..++. +|++| ..|.||+++.|++.+||.|+|...++++.+..|+.
T Consensus 165 ~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~-~fg~p-~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~~ 242 (790)
T PRK09519 165 VGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGV-MFGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNR 242 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCC-cCCCC-CcCCCCcccceeccEEEEeeeccccccCccccceE
Confidence 66778888899999999999999999999999999886 67666 78999999999999999999988888877778999
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEII 337 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~ 337 (427)
+.++|.||+.-| .....|.+. ...-..+.+++
T Consensus 243 ~~~kv~ks~cLp-e~e~v~~i~-tG~~v~i~elv 274 (790)
T PRK09519 243 TRVKVVKNKCLA-EGTRIFDPV-TGTTHRIEDVV 274 (790)
T ss_pred EEEEEEECCCCC-CceEEEEec-CCCEEEHHHhh
Confidence 999999999875 445667776 22233455555
No 19
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=8.7e-36 Score=304.34 Aligned_cols=291 Identities=16% Similarity=0.124 Sum_probs=202.2
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHhcC
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 81 (427)
|++|++++.+|+++.. +.+.....+..+..+++..+...-....... .. ...++.+.+.++++.+.+
T Consensus 95 a~~v~~~~~~R~~~~~------~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~-~~---~~~~~~~~~~~~~~~~~~--- 161 (428)
T PRK06749 95 EGLVRGAWKMYQAGVL------GHKMGERLIAEKSEKIIGETITALCELEEKD-CV---CEFDLKDALVDLYEELHQ--- 161 (428)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCHHHHHHHHHHHHHHHHccC-CC---CCccHHHHHHHHHHHHHh---
Confidence 7899999999999996 4544444443333333332222222221111 11 123556677777766532
Q ss_pred CCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH
Q 014268 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 161 (427)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~ 161 (427)
......|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++..+.+|+|||+||+..+
T Consensus 162 -----------~~~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~q 228 (428)
T PRK06749 162 -----------DAKEITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQ 228 (428)
T ss_pred -----------cCCCCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHH
Confidence 12357899999999999997 99999999999999999999999999999988889999999999874
Q ss_pred HHHHH----hccccCc---------------------------cccCC--CCCHHHHHHHHHHHHhcCC--ccEEEEecc
Q 014268 162 SLAET----IGVKTEN---------------------------LLLAQ--PDCGEQALSLVDTLIRSGS--VDVVVVDSV 206 (427)
Q Consensus 162 ~~~~~----ig~~~~~---------------------------l~~~~--~~~~~~~~~~~~~l~~~~~--~~lvvIDsl 206 (427)
...+. .+++..+ +++.+ ..+..++...++++....+ +.+|||||+
T Consensus 229 l~~R~ls~~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyL 308 (428)
T PRK06749 229 LLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYL 308 (428)
T ss_pred HHHHHHHhccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCh
Confidence 33322 2222111 11111 2356778888888776655 559999999
Q ss_pred cccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeec
Q 014268 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYA 281 (427)
Q Consensus 207 ~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~a 281 (427)
+.+...... + ..+..+++...+.|+..+++++||||+++|++|.++. +++++|. ++.+|+|+|
T Consensus 309 qli~~~~~~----~----~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~----r~~krP~lsDLR~SG~IEqdA 376 (428)
T PRK06749 309 QLITGDPKH----K----GNRFQEISEISRKLKLLARELNVCVVALSQLSRSVES----RQDKRPLLSDLRETGQIEQDA 376 (428)
T ss_pred hhcCCCCCC----C----CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc----cCCCCCchHhhhhcccccccC
Confidence 998631110 1 1233455556666666666689999999999999876 4444552 234899999
Q ss_pred ceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchh
Q 014268 282 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 334 (427)
Q Consensus 282 d~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~ 334 (427)
|+|++|||+++|.++.+..+ ..+++|+|||+||+ +++.+.|...+.+|.
T Consensus 377 D~vl~l~R~~~y~~~~~~~~-~~eliiaKnR~G~~---G~v~~~f~~~~~~f~ 425 (428)
T PRK06749 377 DVIMLMYREDYYDKETMQKE-MTEIHVAKHRNGPV---GSFKLRFLKEFGRFV 425 (428)
T ss_pred CEEEEEeecccccccccCCC-ceEEEEecCCCCCC---ceEEEEEecCccccc
Confidence 99999999998875444334 35999999999999 578888888887774
No 20
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=6.8e-36 Score=308.60 Aligned_cols=296 Identities=15% Similarity=0.182 Sum_probs=211.1
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccc--hhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLE--TSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|++|++++++|+++.. +.++...++.. +..+++..++. .............+..+.+.+.++++.++..
T Consensus 106 a~iVke~~~~R~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~l~~i~~~~~~~~~~~i~~~~~~~~~~l~~~ 176 (448)
T PRK05748 106 AKIVAEKAMLRRLIRT------ATEIANDAYEPEDDADEILDEAEK---KIFEVSERRNKSGFKNIKDVLVKAYDRIEML 176 (448)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCCCHHHHHHHHHH---HHHHHhhccCccCCcCHHHHHHHHHHHHHHH
Confidence 6899999999999986 55454444432 23333333332 2222111111224555677899999988876
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
... .....|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.+|+||++||+
T Consensus 177 ~~~-----------~~~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 177 HNQ-----------TGDITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred Hhc-----------CCCCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 542 2357899999999999997 9999999999999999999999999999874 5889999999999
Q ss_pred CCHHHHHH----hccccC-------------------------ccccC--CCCCHHHHHHHHHHHHhcC-CccEEEEecc
Q 014268 159 LDPSLAET----IGVKTE-------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSV 206 (427)
Q Consensus 159 ~~~~~~~~----ig~~~~-------------------------~l~~~--~~~~~~~~~~~~~~l~~~~-~~~lvvIDsl 206 (427)
..+...+. .+++.. ++++. ...++.++...++++.... ++++|||||+
T Consensus 244 ~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL 323 (448)
T PRK05748 244 AESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYL 323 (448)
T ss_pred HHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccc
Confidence 87543332 122211 11221 2346788888888887775 7999999999
Q ss_pred cccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeec
Q 014268 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYA 281 (427)
Q Consensus 207 ~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~a 281 (427)
+.+.... .. ++ .+..++....+.|+..+++++||||+++|+++.++. +++++|. ++.+|+|+|
T Consensus 324 ~li~~~~-~~---~~----~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~----r~~k~p~lsdlr~Sg~Ieq~A 391 (448)
T PRK05748 324 QLIQGSG-RS---GE----NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQ----RQDKRPVMSDIRESGSIEQDA 391 (448)
T ss_pred hhcCCCC-CC---Cc----CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhh----cCCCCCChHHHHhhcchhcCC
Confidence 9986311 11 11 122455556666666666789999999999998765 4445552 233899999
Q ss_pred ceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 282 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 282 d~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
|++++|+|+++|..+.+..+ ..+++|+|||+|++ +++.+.|...+.+|.+
T Consensus 392 D~v~~l~r~~~~~~~~~~~~-~~e~~v~K~R~G~~---g~~~~~~~~~~~~f~~ 441 (448)
T PRK05748 392 DIVAFLYRDDYYDEETENKN-TIEIIIAKQRNGPV---GTVELAFQKEYNKFVN 441 (448)
T ss_pred CEEEEEecccccCccccCCC-ceEEEEeccCCCCC---ceEEEEEeCCCCcccc
Confidence 99999999998865444344 35999999999999 5788999999888865
No 21
>PHA02542 41 41 helicase; Provisional
Probab=100.00 E-value=4.9e-35 Score=301.28 Aligned_cols=297 Identities=13% Similarity=0.077 Sum_probs=202.6
Q ss_pred ChhhhhhhhhhhHhhhccCCCCCCcccccccccchhh--h----Hhh--hhhhcccccCCCCCCcccccchhHHHHHHHH
Q 014268 1 MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETST--Q----ICN--FSSKSKRKSKSDGSDSGEENMSKKDLALQQA 72 (427)
Q Consensus 1 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (427)
.|++|++++.+|+++.+ ...++..++.+... + +.. ..++....... ......++..+
T Consensus 90 ya~~v~~~~~~R~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~ 154 (473)
T PHA02542 90 LVKETEKWCQDRAMYNA------LSKAIEIQDNADKPLEKRNKKLPDVGAIPDIMQEALA---------ISFDSSVGHDY 154 (473)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhccCCChhHhhhhccchhhHHHHHHHHHH---------HhhhHHHHHHH
Confidence 37899999999999996 44444333332210 0 000 01011111100 00113367888
Q ss_pred HHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE
Q 014268 73 LDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (427)
Q Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~ 152 (427)
++.++++... ......++|||++.||.+++ ||+++|++++|+|+||+|||||+++++.++++.+.+|+|
T Consensus 155 ~~~ie~~~~~----------~~~~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~ 223 (473)
T PHA02542 155 FEDYEERYDS----------YQSKANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLY 223 (473)
T ss_pred HHHHHHHHhh----------ccCCCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Confidence 8888886421 11247899999999999996 699999999999999999999999999999888889999
Q ss_pred EeCCCCCCHH----HHHHhccccCc-----------------------cccC----CCCCHHHHHHHHHHHHhcCC--cc
Q 014268 153 IDAEHALDPS----LAETIGVKTEN-----------------------LLLA----QPDCGEQALSLVDTLIRSGS--VD 199 (427)
Q Consensus 153 is~E~~~~~~----~~~~ig~~~~~-----------------------l~~~----~~~~~~~~~~~~~~l~~~~~--~~ 199 (427)
||+||+.++. ++...++++++ +.+. ...+..++...++++...++ ++
T Consensus 224 fSLEM~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~d 303 (473)
T PHA02542 224 ISMEMAEEVIAKRIDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPD 303 (473)
T ss_pred EeccCCHHHHHHHHHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 9999998743 33333444322 2112 12357788888888765444 89
Q ss_pred EEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCee-eccCCceee
Q 014268 200 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALK 278 (427)
Q Consensus 200 lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~-~~~gG~~ie 278 (427)
+|||||++.+.+. ...+. + . .+..+++...+.|+..+++++||||+++|++|.++.+ .+|.. -..++.+|+
T Consensus 304 lVvIDYLqL~~~~-~~~~~-~-~---nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r--~dP~lsDLreSG~IE 375 (473)
T PHA02542 304 VIIVDYLGICASS-RLRVS-S-E---NSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDS--SDVDMSDTAESAGLP 375 (473)
T ss_pred EEEEechhhccCC-cccCC-C-C---ChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCcccccc--CCCcchhcccccchH
Confidence 9999999999631 11111 1 1 2234455555555555566799999999999998761 12310 001233899
Q ss_pred eecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 279 FYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 279 ~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
|+||++++|||+++|.+. + ..+++|.|||+||+++.+.+.+.|...+.+|.++
T Consensus 376 qdAD~vl~l~r~~~~~~~----~-~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F~~~ 428 (473)
T PHA02542 376 ATADFMLAVIETEELAQM----G-QQLVKQLKSRYGDKNKFNKFLMGVDKGNQRWYDV 428 (473)
T ss_pred hhcCEEEEEecCcccccC----C-eEEEEEecCCCCCCCCceEEEEEEECCcCccccc
Confidence 999999999999877321 3 3589999999999987789999999999888763
No 22
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=100.00 E-value=3.4e-34 Score=295.20 Aligned_cols=295 Identities=15% Similarity=0.183 Sum_probs=208.5
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccc--hhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLE--TSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|++|++++.+|+++.. +.+....++.. +..+++..++..-..+.. ......+..+.+++.++++.+++.
T Consensus 98 a~~v~e~~~~R~l~~~------~~~~~~~a~~~~~~~~e~l~~~~~~l~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~ 168 (434)
T TIGR00665 98 AEIVKEKAILRRLIEA------GTEIVELAYDPEGDVEELLDEAEQKIFEIAE---SRTSGGFKSIKEILKDTVEEIEEL 168 (434)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---ccCCCCcccHHHHHHHHHHHHHHH
Confidence 6899999999999985 44444333332 233433333322222211 122334666777889999998876
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
+.. .....|+|||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++. .+.+|+||++||+
T Consensus 169 ~~~-----------~~~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 169 YER-----------GGGITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred HhC-----------CCCCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 542 2357899999999999997 9999999999999999999999999999875 5778999999998
Q ss_pred CCHHH----HHHhccccC-------------------------ccccC--CCCCHHHHHHHHHHHHhcCCccEEEEeccc
Q 014268 159 LDPSL----AETIGVKTE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (427)
Q Consensus 159 ~~~~~----~~~ig~~~~-------------------------~l~~~--~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~ 207 (427)
..+.. +...+++.. .+++. ...++.++...++.+...+++++|||||++
T Consensus 236 ~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~ 315 (434)
T TIGR00665 236 AEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQ 315 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchH
Confidence 87433 222233211 11221 124678888888888888889999999999
Q ss_pred ccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecc
Q 014268 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYAS 282 (427)
Q Consensus 208 ~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad 282 (427)
.+..... ++ .+..++....+.|+..+++++||||+++|+++..+. ++.++|. ++..|+++||
T Consensus 316 ~i~~~~~-----~~----~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~----r~~~~p~lsdlr~Sg~ieq~aD 382 (434)
T TIGR00665 316 LMSGSGR-----SE----NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQ----REDKRPQLSDLRESGSIEQDAD 382 (434)
T ss_pred hcCCCCC-----CC----CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhc----cCCCCCChHHHhhccchhhcCC
Confidence 9863111 11 122345555566666666689999999999998765 3334442 2348999999
Q ss_pred eEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 283 VRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 283 ~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
++++|+|+.+|..+++..+ ..+++|.|||+|++| .+.+.|.....+|.+
T Consensus 383 ~vi~l~r~~~~~~~~~~~~-~~~l~v~KnR~G~~g---~~~l~~~~~~~~f~~ 431 (434)
T TIGR00665 383 IVMFLYRDEYYNPDSEDKG-IAEIIIAKQRNGPTG---TVKLAFQGEYTRFEN 431 (434)
T ss_pred EEEEeccccccCCCcCCCC-ceEEEEecCCCCCCC---eEEEEEecCCCcccC
Confidence 9999999988865433334 469999999999884 678888888887754
No 23
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.97 E-value=8.4e-30 Score=252.17 Aligned_cols=222 Identities=27% Similarity=0.440 Sum_probs=174.9
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCH----HHH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~----~~~ 164 (427)
....+++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++.+ +++|+|||+|.++.. .++
T Consensus 100 ~~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 100 QEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred cCcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 457899999999999999 999999999999999999999999999887642 347999999998774 355
Q ss_pred HHhcccc----CccccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHH
Q 014268 165 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (427)
Q Consensus 165 ~~ig~~~----~~l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~ 237 (427)
+++++++ +++.+....+.+++...+.. ++...++++|||||+++++. .++.++ ++. ..+++.+.+.++.
T Consensus 179 ~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr-~~~~~~-g~l--~~r~~~L~~~l~~ 254 (342)
T PLN03186 179 ERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYR-TEFSGR-GEL--SARQMHLGKFLRS 254 (342)
T ss_pred HHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHH-HHhcCC-ccH--HHHHHHHHHHHHH
Confidence 6667765 56667777777776655443 35567899999999999873 444332 221 2334457778888
Q ss_pred HHHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 316 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~ 316 (427)
|.+.++++|++||++||+...++.. .+++|..+|.||..|+|.+++|++|++.. +..+.+++.|+++.|+
T Consensus 255 L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~---------~~~R~~~v~ksp~~p~ 325 (342)
T PLN03186 255 LQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR---------GENRICKVISSPCLPE 325 (342)
T ss_pred HHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC---------CCeEEEEEEECCCCCC
Confidence 8888888999999999998776542 46677669999999999999999999742 2345899999999998
Q ss_pred CCeeEEEEEeCCCCCc
Q 014268 317 FKTAQFELEFGKGISR 332 (427)
Q Consensus 317 ~~~~~~~i~~~~Gi~~ 332 (427)
+. +.|.|. +.|+..
T Consensus 326 ~e-~~F~I~-~~Gi~~ 339 (342)
T PLN03186 326 AE-ARFSIS-SEGVTD 339 (342)
T ss_pred eE-EEEEEE-CCceec
Confidence 65 889998 888753
No 24
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.97 E-value=3.1e-29 Score=247.84 Aligned_cols=220 Identities=29% Similarity=0.426 Sum_probs=174.0
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCH----HHHH
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLAE 165 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~----~~~~ 165 (427)
...+++||++.||.+|| |||+.|.+++|+|+||+|||+||++++.+.+.+ ++.++|||+|.++.+ .+++
T Consensus 104 ~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~ 182 (344)
T PLN03187 104 SVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE 182 (344)
T ss_pred cCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 57789999999999999 999999999999999999999999999887642 368999999998874 3566
Q ss_pred Hhcccc----CccccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHH
Q 014268 166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (427)
Q Consensus 166 ~ig~~~----~~l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L 238 (427)
++|+++ +++.+.++.+.++....+.. .+...++++|||||++.++ +.++.++ ++ ...+++.+.+.++.|
T Consensus 183 ~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~-r~~~~~r-g~--l~~rq~~L~~~~~~L 258 (344)
T PLN03187 183 RFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALF-RVDFTGR-GE--LAERQQKLAQMLSRL 258 (344)
T ss_pred HcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhh-hccccCc-cc--hHHHHHHHHHHHHHH
Confidence 678774 56778888888876655444 4556789999999999987 3444432 22 123445677778888
Q ss_pred HHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 317 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~ 317 (427)
.+.++++|++||++||++..++.. .+++| ..|.||+.|.|.++.|++|++.. +..|.+++.|+++.|++
T Consensus 259 ~~lA~~~~vavvvTNqv~~~~~~~~~~~~~-~~pagG~~~~h~~~~Rl~l~k~~---------~~~R~~~v~ksp~lp~~ 328 (344)
T PLN03187 259 TKIAEEFNVAVYMTNQVIADPGGGMFISDP-KKPAGGHVLAHAATIRLMLRKGK---------GEQRVCKVFDAPNLPEA 328 (344)
T ss_pred HHHHHHcCCEEEEEecEEEcCCcccccCCC-CCCCCchhhheeeeEEEEEEcCC---------CCeEEEEEEECCCCCCc
Confidence 888888999999999999876532 23455 68999999999999999998752 22458999999997765
Q ss_pred CeeEEEEEeCCCCCc
Q 014268 318 KTAQFELEFGKGISR 332 (427)
Q Consensus 318 ~~~~~~i~~~~Gi~~ 332 (427)
. +.|.|. +.||..
T Consensus 329 ~-~~f~It-~~GI~d 341 (344)
T PLN03187 329 E-AEFQIT-SGGIMD 341 (344)
T ss_pred e-EEEEEe-CCCccC
Confidence 4 779999 888753
No 25
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.97 E-value=2.6e-29 Score=246.72 Aligned_cols=220 Identities=28% Similarity=0.460 Sum_probs=173.2
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCH----HHH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~----~~~ 164 (427)
..+.+++||++.||.+|| ||+++|.+++|+|+||+|||+||++++.+++.+ ++.|+|||+|.++.. .++
T Consensus 73 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a 151 (313)
T TIGR02238 73 KKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA 151 (313)
T ss_pred ccCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 357889999999999999 999999999999999999999999999877643 568999999998774 356
Q ss_pred HHhcccc----CccccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHH
Q 014268 165 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (427)
Q Consensus 165 ~~ig~~~----~~l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~ 237 (427)
+++|+++ +++.+.++.+.++..+.+.. .+...++++|||||+++++. .++.+. ++ ...+++.+.+.+..
T Consensus 152 ~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r-~~~~~~-g~--~~~r~~~l~~~~~~ 227 (313)
T TIGR02238 152 ERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFR-VDFSGR-GE--LSERQQKLAQMLSR 227 (313)
T ss_pred HHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhh-hhccCc-cc--hHHHHHHHHHHHHH
Confidence 6778764 46777777788877766544 34566899999999999874 444431 22 12334456677778
Q ss_pred HHHHhhcCCcEEEEEecCCcccccc-cc-CCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTF-GF-GGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 315 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~-~~-~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~ 315 (427)
|.+.+++++++||++||++..++.. .| ++| ..|.||+.|+|++++|++|.|.. +..+.+++.|+++.|
T Consensus 228 L~~la~~~~vavvitNqv~~~~~~~~~~~~~~-~~p~gG~~~~h~~~~Rl~l~k~~---------~~~R~~~~~~sp~~p 297 (313)
T TIGR02238 228 LNKISEEFNVAVFVTNQVQADPGATMTFIADP-KKPIGGHVLAHASTTRILLRKGR---------GEERVAKLYDSPDMP 297 (313)
T ss_pred HHHHHHHcCcEEEEECceEecCCcccccCCCC-ccCcchhhhhhheeEEEEEEecC---------CCeEEEEEeeCCCCC
Confidence 8888888999999999999987642 23 344 68999999999999999999752 224589999999887
Q ss_pred CCCeeEEEEEeCCCCC
Q 014268 316 PFKTAQFELEFGKGIS 331 (427)
Q Consensus 316 ~~~~~~~~i~~~~Gi~ 331 (427)
++ .+.|.|. +.|+.
T Consensus 298 ~~-~~~f~i~-~~Gi~ 311 (313)
T TIGR02238 298 EA-EASFQIT-EGGIA 311 (313)
T ss_pred Ce-EEEEEEe-CCccc
Confidence 74 5789998 88874
No 26
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.97 E-value=2.6e-29 Score=241.78 Aligned_cols=219 Identities=24% Similarity=0.282 Sum_probs=157.6
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCHH----HHHHhccccCc
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPS----LAETIGVKTEN 173 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~~----~~~~ig~~~~~ 173 (427)
||||||+.||.++| |+.+|++++|+|+||+|||+|+++++.+++.. +.+|+||++||+.++. ++...++...+
T Consensus 1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~ 78 (259)
T PF03796_consen 1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK 78 (259)
T ss_dssp SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence 68999999999998 99999999999999999999999999999886 5899999999998743 33334443221
Q ss_pred -------------------------cccC--CCCCHHHHHHHHHHHHhc-CCccEEEEecccccCCCCccCCcccchhHH
Q 014268 174 -------------------------LLLA--QPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (427)
Q Consensus 174 -------------------------l~~~--~~~~~~~~~~~~~~l~~~-~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~ 225 (427)
+++. ...+.+++...++.+... .++++|+|||++.+.+..... . +.
T Consensus 79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---~---~~ 152 (259)
T PF03796_consen 79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---N---RR 152 (259)
T ss_dssp HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---C---CH
T ss_pred hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---C---HH
Confidence 1111 234778888888887777 889999999999998533111 1 11
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeec-----cCCceeeeecceEEEEEeccccccCcccc
Q 014268 226 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVT-----CGGNALKFYASVRLNIKRIGLVKKGEETI 300 (427)
Q Consensus 226 ~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~-----~gG~~ie~~ad~vi~L~r~~~~~~~~~~~ 300 (427)
.....++..|+.|++ ++++|||+++|+++..+. +..++| .++..|+|.||.+++|+|.+.+.+.....
T Consensus 153 ~~~~~i~~~Lk~lA~---~~~i~vi~~sQlnr~~~~----~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~ 225 (259)
T PF03796_consen 153 QEIGEISRELKALAK---ELNIPVIALSQLNREAED----REDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDK 225 (259)
T ss_dssp HHHHHHHHHHHHHHH---HHTSEEEEEEEBSGGGGG----SSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCT
T ss_pred HHHHHHHHHHHHHHH---HcCCeEEEccccChhhhc----ccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCC
Confidence 333445555555554 469999999999998664 222334 24558999999999999998776544333
Q ss_pred cceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 301 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 301 g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
+ ..++.|+|||+|++ +.+.+.|.....+|.++
T Consensus 226 ~-~~~l~v~KnR~G~~---g~v~~~f~~~~~~f~~~ 257 (259)
T PF03796_consen 226 G-EAELIVAKNRNGPT---GTVPLRFNPETSRFTDL 257 (259)
T ss_dssp T-EEEEEEEEESSS-----EEEEEEEETTTTEEEE-
T ss_pred C-eEEEEEEecCCCCC---ceEEEEEECCCCeEeec
Confidence 3 56899999999988 57889988998888765
No 27
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.96 E-value=9e-29 Score=243.50 Aligned_cols=222 Identities=28% Similarity=0.465 Sum_probs=169.6
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc---C---ceEEEEeCCCCCCHH----HH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---G---GYCVFIDAEHALDPS----LA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~---~---~~vv~is~E~~~~~~----~~ 164 (427)
....+++||+++||.+|+ ||+++|++++|+|+||+|||+||++++.+++.+ + +.|+|||+|..+.+. ++
T Consensus 73 ~~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred cccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 467899999999999999 999999999999999999999999999876532 2 478999999987643 45
Q ss_pred HHhcccc----CccccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHH
Q 014268 165 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (427)
Q Consensus 165 ~~ig~~~----~~l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~ 237 (427)
+++++++ +++.+....+.++....+.. ++...++++|||||+++++. .++.+. ++ ...+++.+.+.+..
T Consensus 152 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r-~~~~~~-~~--~~~rq~~l~~~~~~ 227 (316)
T TIGR02239 152 ERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYR-TDFSGR-GE--LSARQMHLARFLRS 227 (316)
T ss_pred HHcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhh-hhcCCc-ch--HHHHHHHHHHHHHH
Confidence 5567664 34556666666665554443 34567899999999999973 344332 22 12334556677788
Q ss_pred HHHHhhcCCcEEEEEecCCcccccc--ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTF--GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 315 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~--~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~ 315 (427)
|.+.+++++++||++||++..++.. .|++....|.||+.|+|+++.|++|++.. +..|.+++.|+|+.|
T Consensus 228 L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~---------~~~R~~~v~ksp~~p 298 (316)
T TIGR02239 228 LQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGR---------GEQRICKIYDSPCLP 298 (316)
T ss_pred HHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecC---------CCeEEEEEEECCCCC
Confidence 8888888999999999999876542 14333478999999999999999999752 124589999999999
Q ss_pred CCCeeEEEEEeCCCCCc
Q 014268 316 PFKTAQFELEFGKGISR 332 (427)
Q Consensus 316 ~~~~~~~~i~~~~Gi~~ 332 (427)
++. +.|.|. +.|+..
T Consensus 299 ~~~-~~f~i~-~~Gi~~ 313 (316)
T TIGR02239 299 ESE-AMFAIY-EDGIGD 313 (316)
T ss_pred CeE-EEEEEe-CCceec
Confidence 865 889998 888753
No 28
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-28 Score=240.01 Aligned_cols=226 Identities=27% Similarity=0.424 Sum_probs=191.2
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccC
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTE 172 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~ 172 (427)
...++++||+.+||++|| ||+-+|.++.|.|.||.|||||+|+++..++..+ +|+|+++|++.. +.++.++|+..+
T Consensus 70 ~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~ 147 (456)
T COG1066 70 EEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTN 147 (456)
T ss_pred eecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCcc
Confidence 467899999999999999 9999999999999999999999999999999877 999999999988 467889999989
Q ss_pred ccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Q 014268 173 NLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 252 (427)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~i 252 (427)
++++....+.++++..+.. .+++++||||+|.++ ..++++.+|.. .|.|+++..|.++++. .|++++++
T Consensus 148 ~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~-s~~~~SapGsV---sQVRe~t~~L~~~AK~---~~i~~fiV 216 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLY-SEEITSAPGSV---SQVREVAAELMRLAKT---KNIAIFIV 216 (456)
T ss_pred ceEEehhcCHHHHHHHHHh----cCCCEEEEeccceee-cccccCCCCcH---HHHHHHHHHHHHHHHH---cCCeEEEE
Confidence 9999888888888776654 689999999999998 57777777765 7889998888888776 79999999
Q ss_pred ecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCc
Q 014268 253 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 332 (427)
Q Consensus 253 sql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~ 332 (427)
-|++++ ++ .++| +.+||..|+++.+. ++....+| .++.+|||+|++.+.+.|++. ++|+..
T Consensus 217 GHVTKe-G~--IAGP-------rvLEHmVDtVlyFE-------Gd~~~~~R-iLR~vKNRFG~t~EiGvFeM~-~~GL~e 277 (456)
T COG1066 217 GHVTKE-GA--IAGP-------RVLEHMVDTVLYFE-------GDRHSRYR-ILRSVKNRFGATNELGVFEMT-ENGLRE 277 (456)
T ss_pred EEEccc-cc--ccCc-------hheeeeeeEEEEEe-------ccCCCcee-eeehhcccCCcccceeEEEEe-cCCeeE
Confidence 999986 32 4455 38999999998764 44333444 789999999999999999999 999999
Q ss_pred hhhHHHHHHhcCCcccccee
Q 014268 333 ESEIIDLALKHKFASKAGAM 352 (427)
Q Consensus 333 ~~~~~~~~~~~~~i~~~g~~ 352 (427)
..++..+....+--+..|+.
T Consensus 278 V~npS~lFL~er~~~~~GS~ 297 (456)
T COG1066 278 VSNPSALFLSERGEQTPGSA 297 (456)
T ss_pred ecCcHHhHhhcCCCCCCCcE
Confidence 99988877666544444553
No 29
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.96 E-value=2.7e-28 Score=233.71 Aligned_cols=220 Identities=31% Similarity=0.498 Sum_probs=165.9
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCHH----HHH
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAE 165 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~~----~~~ 165 (427)
....|+||++.||.+|+ |||+.|.+++|+|+||+|||.||++++.+++.+ +++|+|||+|..+... +++
T Consensus 16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 45689999999999999 999999999999999999999999999988643 4679999999998843 344
Q ss_pred Hhccc----cCccccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHH
Q 014268 166 TIGVK----TENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (427)
Q Consensus 166 ~ig~~----~~~l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L 238 (427)
+.+.+ ++++.+.+..+.+++...+.. .+...+++||||||+..++ +.++.+. + ....+.+.+.+.+..|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~-~--~~~~R~~~L~~~~~~L 170 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR-G--DLAERQRMLARLARIL 170 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST-T--THHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc-h--hhHHHHHHHHHHHHHH
Confidence 44443 457777777777777666544 3456789999999999987 3444431 1 1234556677777777
Q ss_pred HHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 317 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~ 317 (427)
.+.+++++++||++||+...++.. .+.....+|++|..|.|.++.|++|+|.. +..+.+.|.|++..|..
T Consensus 171 ~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~---------~~~R~~~i~ksp~~p~~ 241 (256)
T PF08423_consen 171 KRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR---------GSERVATIVKSPSLPEG 241 (256)
T ss_dssp HHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS---------TTEEEEEEEECSSSSSE
T ss_pred HHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC---------CCeEEEEEeECCCCCCc
Confidence 777888999999999999887652 23334578999999999999999998742 23568999999987764
Q ss_pred CeeEEEEEeCCCCC
Q 014268 318 KTAQFELEFGKGIS 331 (427)
Q Consensus 318 ~~~~~~i~~~~Gi~ 331 (427)
.+.|.|. +.|+.
T Consensus 242 -~~~f~It-~~Gi~ 253 (256)
T PF08423_consen 242 -SASFQIT-EDGIR 253 (256)
T ss_dssp -EEEEEEE-TTEEE
T ss_pred -eEEEEEe-CCCcc
Confidence 5789998 88875
No 30
>PTZ00035 Rad51 protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=237.41 Aligned_cols=222 Identities=26% Similarity=0.424 Sum_probs=173.3
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh------cCceEEEEeCCCCCCH----HHH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~------~~~~vv~is~E~~~~~----~~~ 164 (427)
....+++||++.||.+|+ |||++|++++|+|+||+|||+||++++...+. .++.++||++|.++.+ .++
T Consensus 95 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred ccCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 357789999999999999 99999999999999999999999999988763 3567999999998774 345
Q ss_pred HHhcccc----CccccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHH
Q 014268 165 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (427)
Q Consensus 165 ~~ig~~~----~~l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~ 237 (427)
+++++++ +++.+.+..+.++.++.+.. ++...++++|||||+++++. .++.++ ++ ...+++.+.+.+..
T Consensus 174 ~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r-~~~~~~-~~--~~~r~~~l~~~~~~ 249 (337)
T PTZ00035 174 ERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFR-VDYSGR-GE--LAERQQHLGKFLRA 249 (337)
T ss_pred HHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhh-hhccCc-cc--HHHHHHHHHHHHHH
Confidence 5667664 56777777777777666543 34467899999999999873 444432 11 22345567778888
Q ss_pred HHHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 316 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~ 316 (427)
|.+.++++|++||++||++..++.. +|.+....|.||+.|.|.+++|++|++.. +..|.++|.|+++.|+
T Consensus 250 L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~---------~~~R~~~i~ksp~~p~ 320 (337)
T PTZ00035 250 LQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGR---------GEQRICKIYDSPNLPE 320 (337)
T ss_pred HHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecC---------CCeeEEEEEECCCCCC
Confidence 8888888999999999999886532 23333478999999999999999999753 2245799999999888
Q ss_pred CCeeEEEEEeCCCCCc
Q 014268 317 FKTAQFELEFGKGISR 332 (427)
Q Consensus 317 ~~~~~~~i~~~~Gi~~ 332 (427)
+. +.|.|. ..||..
T Consensus 321 ~~-~~f~It-~~Gi~~ 334 (337)
T PTZ00035 321 SE-AVFAIS-EGGIID 334 (337)
T ss_pred ee-EEEEEe-CCcccc
Confidence 65 689998 888753
No 31
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.96 E-value=3.3e-27 Score=221.21 Aligned_cols=210 Identities=26% Similarity=0.418 Sum_probs=156.9
Q ss_pred cccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhcc----ccCccc
Q 014268 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLL 175 (427)
Q Consensus 100 l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~----~~~~l~ 175 (427)
+|||+++||.+|+ |||++|++++|+|+||+||||||++++..++..+.+++||++|..+...+.+..+. ...++.
T Consensus 1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence 6899999999998 99999999999999999999999999999988889999999998766332222221 234566
Q ss_pred cCCCCCHHHHHHHHH---HHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Q 014268 176 LAQPDCGEQALSLVD---TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 252 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~---~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~i 252 (427)
+.++.+..+....+. .++. .++++|||||++.+.. .+..+... ...+.+.+.+.+..|...+++++|+||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~-~~~~~~~~---~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 154 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYR-LELGDDDT---TIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhh-HHhcCccc---hHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 666666555544333 3333 3489999999999862 22222111 12344566677777888888899999999
Q ss_pred ecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCC
Q 014268 253 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 330 (427)
Q Consensus 253 sql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi 330 (427)
||+++..+. ...+|.+|+.|+|++|.||.|++.+ + +.+ .+.+.|+|..+++..+.|.|. +.|+
T Consensus 155 ~q~~~~~~~-----~~~~p~~g~~~~~~~d~~i~l~~~~----~----~~r-~~~~~~~~~~~~~~~~~f~It-~~Gi 217 (218)
T cd01394 155 NQVYSDVGS-----GSVRPLGGHTLEHWSKVILRLEKLR----V----GTR-RAVLEKHRFRPEGSSVYFRIT-DKGI 217 (218)
T ss_pred cCCEEcCCC-----CcccccCCcchhcceeEEEEEEEcC----C----CeE-EEEEeeCCCCCCCceEEEEEe-CCcc
Confidence 999876542 2367889999999999999998753 1 223 344778888888888899999 7886
No 32
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.95 E-value=2.9e-27 Score=222.74 Aligned_cols=211 Identities=27% Similarity=0.467 Sum_probs=159.8
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhc-----cccCc
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIG-----VKTEN 173 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig-----~~~~~ 173 (427)
.+|||+++||.+|+ ||+++|.+++|+|+||+|||+||++++.+++..+.+|+||++| .+......++. -..++
T Consensus 4 ~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~ 81 (225)
T PRK09361 4 RLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSN 81 (225)
T ss_pred cccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhC
Confidence 68999999999998 9999999999999999999999999999998888999999999 44433322221 12355
Q ss_pred cccCCCCCHHHHHHHHHH---HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEE
Q 014268 174 LLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILI 250 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~---l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI 250 (427)
+.+.++.+..+....++. ++. .+++++||||++++.. .++.+. +. ...+.+.+.+.+..|.+.++++|++||
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~-~~--~~~~~~~l~~~l~~L~~~a~~~~v~vi 156 (225)
T PRK09361 82 IIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDE-ED--NSKLNRELGRQLTHLLKLARKHDLAVV 156 (225)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCC-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 666777766665444433 333 6799999999998873 222211 11 123345677777778888888999999
Q ss_pred EEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCC
Q 014268 251 FINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 330 (427)
Q Consensus 251 ~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi 330 (427)
++||+....+. . ...+.+|..|+|++|.++.|++. . +..+.+.+.|+|..+++..+.|+|. +.|+
T Consensus 157 ~tnq~~~~~~~----~-~~~~~gg~~~~~~~d~ii~l~~~----~-----~~~r~~~i~k~~~~~~~~~~~f~It-~~Gi 221 (225)
T PRK09361 157 ITNQVYSDIDS----D-GLRPLGGHTLEHWSKTILRLEKF----R-----NGKRRATLEKHRSRPEGESAEFRIT-DRGI 221 (225)
T ss_pred EEccceecCCC----C-cccCCCcchhhhhccEEEEEEEc----c-----CCeEEEEEEECCCCCCCCeEEEEEe-CCcE
Confidence 99999876542 1 24667888999999999999872 1 1234678999999888888999999 8887
Q ss_pred C
Q 014268 331 S 331 (427)
Q Consensus 331 ~ 331 (427)
.
T Consensus 222 ~ 222 (225)
T PRK09361 222 E 222 (225)
T ss_pred e
Confidence 5
No 33
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.95 E-value=2.8e-27 Score=222.62 Aligned_cols=206 Identities=46% Similarity=0.667 Sum_probs=160.5
Q ss_pred cccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC------ceEEEEeCCCCCCHHHH----HHhcc
Q 014268 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSLA----ETIGV 169 (427)
Q Consensus 100 l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~------~~vv~is~E~~~~~~~~----~~ig~ 169 (427)
++||++.||.+|+ ||+++|++++|+|+||+|||+||++++...+.++ .+++||++|..++.... ...+.
T Consensus 1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 5899999999998 8999999999999999999999999999988776 88999999998774332 23333
Q ss_pred c----cCccccCCCCCHHHHHHHHHHHHh---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHh
Q 014268 170 K----TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242 (427)
Q Consensus 170 ~----~~~l~~~~~~~~~~~~~~~~~l~~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l 242 (427)
. .+++.+..+.+.+++...++.+.. ..++++|||||++.+... ...+ ......+.+.+.+.++.|.+.+
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~-~~~~---~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRK-EFIG---RGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhh-hhcC---CchHHHHHHHHHHHHHHHHHHH
Confidence 2 567777788888888888777654 678999999999998742 2221 1112344566777778888888
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCC
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 318 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~ 318 (427)
++++++||++||+++.++. .+++ ..+|.+|..|+|.+|.|+.|.+.... .+.++.+.+.|++++|++.
T Consensus 156 ~~~~~~vi~tnq~~~~~~~-~~~~-~~~p~~G~~~~~~~~~ri~l~~~~~~------~~~~r~~~~~k~~~~~~~~ 223 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVDV-MFGD-PETPAGGNALAHASTTRLDLRKGRGI------IGERRIAKVVKSPALPEAE 223 (226)
T ss_pred HHhCcEEEEEEEEeeeccc-ccCC-CccccCchhhhCcccEEEEEEecCCc------cCcEEEEEEEeCCCCCCcc
Confidence 8899999999999987664 1223 36789999999999999999976411 2345689999999888753
No 34
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.95 E-value=1.7e-26 Score=227.86 Aligned_cols=219 Identities=27% Similarity=0.468 Sum_probs=165.6
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCHH----HH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~~----~~ 164 (427)
..+..++||++.||.+|+ ||++.|.+++|+|+||+|||+||++++.+++.+ ++.++|||+|..+... ++
T Consensus 72 ~s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 72 KTIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred ccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 357789999999999999 999999999999999999999999999998642 3589999999987643 34
Q ss_pred HHhcccc----CccccCCCCCHHHH---HHHHHHHHhcC--CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHH
Q 014268 165 ETIGVKT----ENLLLAQPDCGEQA---LSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 235 (427)
Q Consensus 165 ~~ig~~~----~~l~~~~~~~~~~~---~~~~~~l~~~~--~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L 235 (427)
..+|++. +++.+..+.+.+.. ++.+..++... .+++|||||++.+.. .++.+. + ....+++.+.+.+
T Consensus 151 ~~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r-~e~~~~-~--~~~~r~~~l~~~~ 226 (310)
T TIGR02236 151 EARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFR-AEYVGR-G--ALAERQQKLNKHL 226 (310)
T ss_pred HHcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhh-HhhcCc-h--hHHHHHHHHHHHH
Confidence 4556653 45566665554442 23334444444 488999999999873 444432 1 1223445566777
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 315 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~ 315 (427)
..|...+++++++||++||++..++. .++++ ..|+||..|+|++++|++|.+.. +..+.+.+.|||+.|
T Consensus 227 ~~L~~~a~~~~~~v~~tnqv~~~~~~-~~~~~-~~~~~G~~~~h~~~~rl~l~~~~---------~~~R~~~~~k~~~~~ 295 (310)
T TIGR02236 227 HDLLRLADLYNAAVVVTNQVMARPDA-FFGDP-TRPIGGHILGHAATFRVYLRKGK---------GDKRIARLVDSPHLP 295 (310)
T ss_pred HHHHHHHHHhCcEEEEeceeeecCcc-ccCcc-ccCCcchhhhhheeEEEEEEecC---------CCeEEEEEEECCCCC
Confidence 88888888899999999999987654 34455 68999999999999999999742 124589999999999
Q ss_pred CCCeeEEEEEeCCCCC
Q 014268 316 PFKTAQFELEFGKGIS 331 (427)
Q Consensus 316 ~~~~~~~~i~~~~Gi~ 331 (427)
++.. .|.|. +.|+.
T Consensus 296 ~~~~-~f~i~-~~Gi~ 309 (310)
T TIGR02236 296 EGEA-VFRIT-EKGIE 309 (310)
T ss_pred CeeE-EEEEe-CCCcc
Confidence 8765 69988 77763
No 35
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.95 E-value=3.1e-26 Score=229.65 Aligned_cols=215 Identities=26% Similarity=0.358 Sum_probs=166.8
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~ 173 (427)
...+++||+++||++|| |||++|+++.|.|+||+|||||+++++..+++.+++++|+++|++.++ .+++++|++.++
T Consensus 60 ~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~ 138 (372)
T cd01121 60 EEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTEN 138 (372)
T ss_pred ccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCccc
Confidence 56789999999999999 999999999999999999999999999999888889999999988764 456788988888
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEe
Q 014268 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~is 253 (427)
+.+....+.+++.+.+ ...+++++|||+++.+.. ...++.++.. .+.+++... |.+.++++++++|+++
T Consensus 139 l~l~~e~~le~I~~~i----~~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~qvr~~~~~---L~~lak~~~itvilvg 207 (372)
T cd01121 139 LYLLAETNLEDILASI----EELKPDLVIIDSIQTVYS-SELTSAPGSV---SQVRECTAE---LMRFAKERNIPIFIVG 207 (372)
T ss_pred EEEEccCcHHHHHHHH----HhcCCcEEEEcchHHhhc-cccccCCCCH---HHHHHHHHH---HHHHHHHcCCeEEEEe
Confidence 8877766666666554 346799999999999873 3333323332 344554444 4455556899999999
Q ss_pred cCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCch
Q 014268 254 QVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 333 (427)
Q Consensus 254 ql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~ 333 (427)
|+++.-. + .|.+.++|.+|.++.+.++.. ...+.+++.|||++++.....|+|. ++|+...
T Consensus 208 hvtk~g~---~-------aG~~~leh~vD~Vi~le~~~~--------~~~R~Lri~KnR~g~~~ei~~F~i~-~~Gl~~v 268 (372)
T cd01121 208 HVTKEGS---I-------AGPKVLEHMVDTVLYFEGDRH--------SEYRILRSVKNRFGSTNELGVFEMR-ENGLREV 268 (372)
T ss_pred eccCCCc---c-------cCcccchhhceEEEEEEcCCC--------CcEEEEEEEeCCCCCCCCEEEEEEC-CCCeEEc
Confidence 9987411 1 233479999999998875421 1244899999999999889999999 9999877
Q ss_pred hhHHHHHH
Q 014268 334 SEIIDLAL 341 (427)
Q Consensus 334 ~~~~~~~~ 341 (427)
.++..+-.
T Consensus 269 ~~ps~~fl 276 (372)
T cd01121 269 SNPSELFL 276 (372)
T ss_pred cChhhhee
Confidence 76665443
No 36
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.94 E-value=5e-26 Score=234.07 Aligned_cols=216 Identities=21% Similarity=0.299 Sum_probs=167.3
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~ 173 (427)
...+++||+++||++|| |||++|++++|+|+||+|||||+++++.++++.+++++|+++|++..+ ..+.++|++.++
T Consensus 72 ~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~ 150 (454)
T TIGR00416 72 EVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPN 150 (454)
T ss_pred ccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHH
Confidence 57799999999999999 999999999999999999999999999999888889999999988764 345678988888
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEe
Q 014268 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~is 253 (427)
+.+....+.+++...+ ...+++++||||++.+.. .+.++.++.. .+.+++.. .|.+.++++|+|+++++
T Consensus 151 l~~~~e~~~~~I~~~i----~~~~~~~vVIDSIq~l~~-~~~~~~~g~~---~q~r~~~~---~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 151 LYVLSETNWEQICANI----EEENPQACVIDSIQTLYS-PDISSAPGSV---SQVRECTA---ELMRLAKTRGIAIFIVG 219 (454)
T ss_pred eEEcCCCCHHHHHHHH----HhcCCcEEEEecchhhcc-cccccCCCCH---HHHHHHHH---HHHHHHHHhCCEEEEEe
Confidence 8887776666655544 445799999999999873 3333333432 34454444 44455566899999999
Q ss_pred cCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCch
Q 014268 254 QVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 333 (427)
Q Consensus 254 ql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~ 333 (427)
|++.. +. +.+ .+.++|.+|.++.|.... ....+.+.+.|||+++......|+|. ++|+..+
T Consensus 220 hvtke-g~--~aG-------~~~le~lvD~VI~Le~~~--------~~~~R~L~v~K~R~g~~~e~~~f~it-~~Gl~~v 280 (454)
T TIGR00416 220 HVTKE-GS--IAG-------PKVLEHMVDTVLYFEGDR--------DSRFRILRSVKNRFGATNEIGIFEMT-EQGLREV 280 (454)
T ss_pred ccccC-Cc--cCC-------cccEeeeceEEEEEeccC--------CCcEEEEEEecCCCCCCCcEEEEEEe-cCCceec
Confidence 98764 11 222 237999999999997532 12344899999999999888999999 9999876
Q ss_pred hhHHHHHHh
Q 014268 334 SEIIDLALK 342 (427)
Q Consensus 334 ~~~~~~~~~ 342 (427)
.++..+-..
T Consensus 281 ~~ps~~f~~ 289 (454)
T TIGR00416 281 LNPSAIFLS 289 (454)
T ss_pred CChhHhhhc
Confidence 676665443
No 37
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.94 E-value=7.5e-26 Score=223.85 Aligned_cols=219 Identities=28% Similarity=0.471 Sum_probs=165.1
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCH----HHH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~----~~~ 164 (427)
..+..++||+++||.+|+ ||+++|.+++|+|+||+|||+||++++.+++.+ ++.++||++|++++. .++
T Consensus 79 ks~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 79 KNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred ccCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 357789999999999999 999999999999999999999999999988653 348999999998773 345
Q ss_pred HHhccccC----ccccCCCCCHHHH---HHHHHHHHhc-CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHH
Q 014268 165 ETIGVKTE----NLLLAQPDCGEQA---LSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 236 (427)
Q Consensus 165 ~~ig~~~~----~l~~~~~~~~~~~---~~~~~~l~~~-~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~ 236 (427)
+.+|++++ ++.+.++.+.++. +..+..++.. .++++|||||+++++. .++.++ +. ...+.+.+.+.+.
T Consensus 158 ~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~-~~~~~~-~~--~~~r~~~l~~~~~ 233 (317)
T PRK04301 158 EALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFR-AEYVGR-GN--LAERQQKLNKHLH 233 (317)
T ss_pred HHcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhh-hhccCC-cc--HHHHHHHHHHHHH
Confidence 55677653 4555555544433 3334445555 6899999999999873 334332 11 1223444566677
Q ss_pred HHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 316 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~ 316 (427)
.|.+.++++|++||++||+...++. .++ +...|++|..|.|.++.||+|.+.. +..+.+.+.|+++.|+
T Consensus 234 ~L~~la~~~~vavl~tnqv~~~~~~-~~~-~~~~~~~G~~~~~~~~~rl~l~k~~---------~~~R~~~v~k~~~~~~ 302 (317)
T PRK04301 234 DLLRLADLYNAAVVVTNQVMARPDA-FFG-DPTQPIGGHILGHTATFRIYLRKSK---------GNKRIARLVDSPHLPE 302 (317)
T ss_pred HHHHHHHHhCCEEEEeceEEecccc-ccC-ccccCCcchHhHhheeEEEEEEecC---------CCceEEEEEeCCCCCC
Confidence 7777778899999999999887654 344 3478999999999999999998742 1245899999999988
Q ss_pred CCeeEEEEEeCCCCC
Q 014268 317 FKTAQFELEFGKGIS 331 (427)
Q Consensus 317 ~~~~~~~i~~~~Gi~ 331 (427)
+. +.|.|. ..|+.
T Consensus 303 ~~-~~f~I~-~~Gi~ 315 (317)
T PRK04301 303 GE-AVFRIT-EEGIR 315 (317)
T ss_pred ce-EEEEEe-CCccc
Confidence 64 489998 77764
No 38
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.94 E-value=9.5e-26 Score=213.49 Aligned_cols=215 Identities=32% Similarity=0.512 Sum_probs=158.4
Q ss_pred cccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCHH----HHHHhcc
Q 014268 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAETIGV 169 (427)
Q Consensus 100 l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~~----~~~~ig~ 169 (427)
+|||++.||.+|+ ||+++|++++|+|+||+|||+||++++...+.+ +.+++||++|..+... ++...+.
T Consensus 1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence 5899999999999 999999999999999999999999999887654 3789999999976632 3334444
Q ss_pred c----cCccccCCCCCHHHHHHH---HHHHHhcC-CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014268 170 K----TENLLLAQPDCGEQALSL---VDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (427)
Q Consensus 170 ~----~~~l~~~~~~~~~~~~~~---~~~l~~~~-~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~ 241 (427)
+ .+++.+..+.+.+++... +...+.+. ++++|||||++.++. ..+.+ ......+.+.+.+.+..|.+.
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~---~~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDG---RGELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcC---CccHHHHHHHHHHHHHHHHHH
Confidence 4 345666666666655544 33445555 899999999998762 22222 111223445566677777777
Q ss_pred hhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCee
Q 014268 242 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTA 320 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~ 320 (427)
+++++++||++||+....+.. .+.+....|.+|..|.+.++.|+++++.. +..+.+.+.|++..| ....
T Consensus 156 a~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~---------~~~r~~~i~k~~~~~-~~~~ 225 (235)
T cd01123 156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR---------GEERIAKIVDSPHLP-EGEA 225 (235)
T ss_pred HHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC---------CCceEEEEeeCCCCC-CceE
Confidence 778999999999998765431 00123357899999999999999998753 123589999999887 4567
Q ss_pred EEEEEeCCCC
Q 014268 321 QFELEFGKGI 330 (427)
Q Consensus 321 ~~~i~~~~Gi 330 (427)
.|+|. +.|+
T Consensus 226 ~f~It-~~Gi 234 (235)
T cd01123 226 VFAIT-EEGI 234 (235)
T ss_pred EEEEe-CCcc
Confidence 89998 7776
No 39
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.94 E-value=1.6e-25 Score=230.13 Aligned_cols=216 Identities=27% Similarity=0.367 Sum_probs=166.9
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~ 173 (427)
...+++||+++||++|| |||++|+++.|+|+||+|||||+++++...++.+.+|+|+++|++.++ .+++++|++.++
T Consensus 58 ~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~ 136 (446)
T PRK11823 58 EEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDN 136 (446)
T ss_pred cCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhc
Confidence 56789999999999999 999999999999999999999999999999877889999999998774 347788988888
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEe
Q 014268 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~is 253 (427)
+.+....+.++++..+ ...++++|||||++.+.. ..+++.++.. .+.+++. ..|.+.++++|+++|+++
T Consensus 137 l~~~~e~~l~~i~~~i----~~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~qvr~~~---~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 137 LYLLAETNLEAILATI----EEEKPDLVVIDSIQTMYS-PELESAPGSV---SQVRECA---AELMRLAKQRGIAVFLVG 205 (446)
T ss_pred EEEeCCCCHHHHHHHH----HhhCCCEEEEechhhhcc-ccccCCCCCH---HHHHHHH---HHHHHHHHHcCCEEEEEe
Confidence 8777666666655544 346799999999999873 3444333332 3445444 444555566899999999
Q ss_pred cCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCch
Q 014268 254 QVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 333 (427)
Q Consensus 254 ql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~ 333 (427)
|+++.- . + .|...++|.+|.++.+.+.. ....+.+++.|||++++.....|+|. +.|+...
T Consensus 206 hvtk~~-~--~-------ag~~~lehlvD~Vi~le~~~--------~~~~R~l~i~K~R~g~~~e~~~f~it-~~Gi~~v 266 (446)
T PRK11823 206 HVTKEG-A--I-------AGPRVLEHMVDTVLYFEGDR--------HSRYRILRAVKNRFGATNEIGVFEMT-EQGLREV 266 (446)
T ss_pred eccCCC-C--c-------CCcchhhhhCeEEEEEEcCC--------CCceEEEEEccCCCCCCCceEEEEEc-CCCceEC
Confidence 987641 1 1 22347999999999876311 12345799999999999888999999 9999877
Q ss_pred hhHHHHHHh
Q 014268 334 SEIIDLALK 342 (427)
Q Consensus 334 ~~~~~~~~~ 342 (427)
.++..+-..
T Consensus 267 ~~ps~~~~~ 275 (446)
T PRK11823 267 SNPSELFLS 275 (446)
T ss_pred CCHHHHHhc
Confidence 776665554
No 40
>PRK07773 replicative DNA helicase; Validated
Probab=99.94 E-value=1.3e-26 Score=256.54 Aligned_cols=237 Identities=15% Similarity=0.169 Sum_probs=169.7
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHhcC
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 81 (427)
|+||++++++|+++.. +.++...++.. ..++.+..++++.............++..+.+++.++++.|++...
T Consensus 120 a~iV~e~s~~R~li~~------~~~i~~~a~~~-~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 192 (886)
T PRK07773 120 ARIVAEKALLRRLIEA------GTRIVQYGYAE-GADVAEVVDRAQAEIYDVTDRRLSEDFVALEDLLQPTFDEIDAIAS 192 (886)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhccCcCCceeHHHHHHHHHHHHHHHHh
Confidence 6899999999999997 55555554442 1223333444444333333233334566777899999999987644
Q ss_pred CCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCC
Q 014268 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD 160 (427)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~ 160 (427)
. .....|+|||++.||.+++ |+++|++++|+|+||+|||+||++++.+++.. +.+|+||++||+..
T Consensus 193 ~-----------~~~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ 259 (886)
T PRK07773 193 S-----------GGLARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE 259 (886)
T ss_pred c-----------CCCCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 2 2357899999999999997 99999999999999999999999999998754 77899999999987
Q ss_pred HHHHHH----hccccCc-------------------------cccC--CCCCHHHHHHHHHHHHhcCCccEEEEeccccc
Q 014268 161 PSLAET----IGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 161 ~~~~~~----ig~~~~~-------------------------l~~~--~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l 209 (427)
+...+. .+++.++ +++. ...++.++...++++.+..++++|||||++.|
T Consensus 260 ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~ 339 (886)
T PRK07773 260 QLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLM 339 (886)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhc
Confidence 543332 2333221 1111 12467888888888888888999999999998
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeec
Q 014268 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVT 271 (427)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~ 271 (427)
..... .+ .+.++++...+.|+..+++++||||+++|+++.++. +++++|
T Consensus 340 ~~~~~-----~~----~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~----r~~krP 388 (886)
T PRK07773 340 TSGKK-----YE----NRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQ----RTDKRP 388 (886)
T ss_pred CCCCC-----CC----CHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhc----cCCCCC
Confidence 63111 11 223455666666666667789999999999999876 455555
No 41
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.93 E-value=1.2e-24 Score=209.04 Aligned_cols=217 Identities=20% Similarity=0.266 Sum_probs=153.7
Q ss_pred CccccCchhhHHhh--------------cCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--
Q 014268 98 PVVSTGSFALDIAL--------------GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-- 161 (427)
Q Consensus 98 ~~l~TG~~~LD~~l--------------~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~-- 161 (427)
-++|||+++||.+| + ||||+|.+++|+|+||+|||+||++++.+.++.+.+++|+++|++.+.
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~ 80 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVY 80 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHH
Confidence 47899999999999 5 899999999999999999999999999998888899999999986642
Q ss_pred ----HHHHHhccccC----ccccCCCC-------CHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHH
Q 014268 162 ----SLAETIGVKTE----NLLLAQPD-------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 226 (427)
Q Consensus 162 ----~~~~~ig~~~~----~l~~~~~~-------~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~ 226 (427)
..+..+|++++ ++.+.++. +.++++..+...+...+++++||||++.+... .. .
T Consensus 81 ~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--------~~---~ 149 (259)
T TIGR03878 81 TSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEA--------KE---M 149 (259)
T ss_pred HHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhccc--------ch---H
Confidence 12455677643 44544433 24556666677777788999999999887531 00 1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc---cc-C--cccc
Q 014268 227 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV---KK-G--EETI 300 (427)
Q Consensus 227 ~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~---~~-~--~~~~ 300 (427)
..+ +.+..|...+++.++|+++++|....... . ...+.++..+++.+|.+|+|+..... .. . ....
T Consensus 150 ~~r---~~~~~L~~~lk~~~~t~ll~~e~~~~~~~--~---~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~ 221 (259)
T TIGR03878 150 MAR---EIVRQLFNFMKKWYQTALFVSQKRSGHEE--L---SAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIG 221 (259)
T ss_pred HHH---HHHHHHHHHHHHcCCeEEEEeccccCccc--c---cccccCCcceeEeeccEEEEeeeeccchhhhhhcccccc
Confidence 222 44566666777789999999997653211 1 11344455699999999999853211 10 0 0011
Q ss_pred cceEEEEEeecCCCCCC-CeeEEEEEeCCCCCchhh
Q 014268 301 GSQIAVKIVKNKLAPPF-KTAQFELEFGKGISRESE 335 (427)
Q Consensus 301 g~~~~l~i~K~R~g~~~-~~~~~~i~~~~Gi~~~~~ 335 (427)
...+.+.|.|+|..++. ...+|.|. +.|+....+
T Consensus 222 ~~~R~l~I~KmRg~~h~~~~~~~~It-~~Gi~~i~~ 256 (259)
T TIGR03878 222 EIVRLFRIDGCRMCGHDTKTHVLEID-ETGLVKIGP 256 (259)
T ss_pred ceEEEEEEEEccCCCCCCceeEEEEc-CCceEEecC
Confidence 24557999999986543 46789998 888765543
No 42
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.93 E-value=1.1e-24 Score=207.05 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=146.3
Q ss_pred hhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCHHH----HHHhccccCc-------
Q 014268 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTEN------- 173 (427)
Q Consensus 106 ~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~~~----~~~ig~~~~~------- 173 (427)
+||.+++ |+++|++++|+|+||+|||+|+++++.+++.. +.+++||++|++....+ +...+++...
T Consensus 2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 6899997 99999999999999999999999999999887 89999999999876432 2333443221
Q ss_pred ------------------ccc--CCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH
Q 014268 174 ------------------LLL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (427)
Q Consensus 174 ------------------l~~--~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~ 233 (427)
+.+ ....+.+++...++.+....++++|||||++.+.... . .. .....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~---~~----~~~~~~~~ 150 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--K---KG----NRQQEVAE 150 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--C---CC----CHHHHHHH
Confidence 111 1234678888888888777899999999999886321 0 01 11123445
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccccccccCCCe-eeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecC
Q 014268 234 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 312 (427)
Q Consensus 234 ~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~-~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R 312 (427)
.++.|...++++||+||+++|+++..+.....+|. ....++..+++.||.+|.|+|...+..+....+ ..++.|.|||
T Consensus 151 ~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~-~~~l~v~KnR 229 (242)
T cd00984 151 ISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKG-IAEIIVAKNR 229 (242)
T ss_pred HHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCC-ceEEEEECCC
Confidence 55566666666899999999999864331111221 111334589999999999999876553332233 4589999999
Q ss_pred CCCCCCeeEEEEEeC
Q 014268 313 LAPPFKTAQFELEFG 327 (427)
Q Consensus 313 ~g~~~~~~~~~i~~~ 327 (427)
+|++ +.+.+.|.
T Consensus 230 ~G~~---g~~~l~~~ 241 (242)
T cd00984 230 NGPT---GTVELRFD 241 (242)
T ss_pred CCCC---eeEEEEee
Confidence 9987 56777664
No 43
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.93 E-value=3.2e-24 Score=199.59 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=148.4
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHh-----ccccCccccCCCCC
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI-----GVKTENLLLAQPDC 181 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~i-----g~~~~~l~~~~~~~ 181 (427)
||.+|+ ||+|+|++++|+|+||+|||+||++++.+.+..+.+++||++|. +......++ ....+++.+.++.+
T Consensus 1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence 799999 99999999999999999999999999999988888999999997 443222221 22346666666666
Q ss_pred HHHH---HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 182 GEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 182 ~~~~---~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
..+. +..+..++..+.+++|||||++.+.. .+..+... .+.+.+...+..|.+.++++++++|++||++..
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~~~-----~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDDRI-----SRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCccH-----HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 5554 34444455566899999999999863 22222111 233455556666777778899999999998875
Q ss_pred ccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCC
Q 014268 259 LSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 330 (427)
Q Consensus 259 v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi 330 (427)
.+. ....|.||..++|++|.++.|++. . + .+.+.+.|++..+++..+.|.|+ +.|+
T Consensus 153 ~~~-----~~~~~~gg~~~~~~~d~vi~l~~~----~-----~-~r~~~i~k~~~~~~~~~~~f~It-~~Gi 208 (209)
T TIGR02237 153 VNN-----GTLRPLGGHLLEHWSKVILRLEKF----R-----G-RRLATLEKHRSRPEGESVYFRIT-DDGI 208 (209)
T ss_pred cCC-----CCCcCCCcchhheeeeEEEEEEec----C-----C-EEEEEEEECCCCCCCCeEEEEEe-CCcc
Confidence 442 224678888999999999999864 1 2 23667889998888888899999 7786
No 44
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.92 E-value=4.9e-24 Score=202.45 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=149.9
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCc---
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN--- 173 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~--- 173 (427)
+++||++.||.+|+ ||+|+|+++.|+|+||+|||+||++++.+.++.+.+++||++|++.+.. .+..+|++.+.
T Consensus 2 ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~ 80 (237)
T TIGR03877 2 RVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEE 80 (237)
T ss_pred ccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhh
Confidence 58999999999998 9999999999999999999999999999888889999999999977642 34456665432
Q ss_pred ---cccC-------------------CCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHH
Q 014268 174 ---LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM 231 (427)
Q Consensus 174 ---l~~~-------------------~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~l 231 (427)
+.+. .+.+.++++..+...+...+++++||||++.+... .. ...+
T Consensus 81 ~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~--------~~---~~~r-- 147 (237)
T TIGR03877 81 EGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYIT--------KP---AMAR-- 147 (237)
T ss_pred cCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcC--------Ch---HHHH--
Confidence 1111 23456677777777777778999999999987621 00 1112
Q ss_pred HHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeec
Q 014268 232 SQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKN 311 (427)
Q Consensus 232 s~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~ 311 (427)
..+..|.+.++++|+|+|+++|.+..-+ +.++..+++.||.+|.|+... .++ ...+.+.|.|.
T Consensus 148 -~~l~~l~~~lk~~~~t~llt~~~~~~~~----------~~~~~~~~~~~D~vI~L~~~~---~~~---~~~R~l~i~K~ 210 (237)
T TIGR03877 148 -SIVMQLKRVLSGLGCTSIFVSQVSVGER----------GFGGPGVEHAVDGIIRLDLDE---IDG---ELKRSLIVWKM 210 (237)
T ss_pred -HHHHHHHHHHHhCCCEEEEEECcccccc----------cccccceEEEEeEEEEEEEEe---eCC---ceEEEEEEEEC
Confidence 3456666667778999999999765311 111225899999999998543 111 23457999999
Q ss_pred CCCCCC-CeeEEEEEeCCCCCch
Q 014268 312 KLAPPF-KTAQFELEFGKGISRE 333 (427)
Q Consensus 312 R~g~~~-~~~~~~i~~~~Gi~~~ 333 (427)
|..++. ....|+|. ++|+..+
T Consensus 211 Rg~~~~~~~~~~~It-~~Gi~v~ 232 (237)
T TIGR03877 211 RGTKHSMRRHPFEIT-DKGIIVY 232 (237)
T ss_pred CCCCCCCceEEEEEc-CCCEEEE
Confidence 988765 45689998 8888643
No 45
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.92 E-value=7.1e-24 Score=205.06 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=152.9
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCHHHHH----Hhccc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAE----TIGVK 170 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~~~~~----~ig~~ 170 (427)
+..++|||++.||.++| |+++|++++|+|+||+|||||+++++..++.. +..|+||++|++..+...+ ..++.
T Consensus 9 ~~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~ 86 (271)
T cd01122 9 SNEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKR 86 (271)
T ss_pred cccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCC
Confidence 34599999999999997 99999999999999999999999999998876 8899999999976543221 12332
Q ss_pred cC------------------------ccccCCC---CCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 171 TE------------------------NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 171 ~~------------------------~l~~~~~---~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
.. ++.+... .+.+++++.++.++...++++||||+++.+..... .. .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~--~--- 160 (271)
T cd01122 87 LHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-AS--G--- 160 (271)
T ss_pred cccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-Cc--h---
Confidence 21 1222221 25778888888887788899999999999873211 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccc---cCCCee-eccCCceeeeecceEEEEEeccccccCccc
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG---FGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEET 299 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~---~~~~~~-~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~ 299 (427)
.....+...++.|...+++++|||++++|+++...... -.+|.. ...|+..+++.||.+|.|++..... ...
T Consensus 161 --~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e--~~~ 236 (271)
T cd01122 161 --DERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAE--LDE 236 (271)
T ss_pred --hHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccc--ccc
Confidence 11223445566666666778999999999998532200 011211 1244557999999999999875331 111
Q ss_pred ccceEEEEEeecCCC-CCCCeeEEEEEeCCCCCch
Q 014268 300 IGSQIAVKIVKNKLA-PPFKTAQFELEFGKGISRE 333 (427)
Q Consensus 300 ~g~~~~l~i~K~R~g-~~~~~~~~~i~~~~Gi~~~ 333 (427)
...+.+.+.|+|++ +.+ ..+.+.|+....++
T Consensus 237 -~~~~~i~v~K~R~~~~~g--~~~~~~~~~~t~~~ 268 (271)
T cd01122 237 -RNTTYLRILKNRFTGGTG--VAGPLEYDKETGRL 268 (271)
T ss_pred -CCcEEEEEEeeccCCCcc--ceeeEEEECCCcee
Confidence 23458999999986 544 23566666654443
No 46
>PRK04328 hypothetical protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=200.57 Aligned_cols=204 Identities=21% Similarity=0.253 Sum_probs=150.9
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCcc-
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL- 174 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~l- 174 (427)
++++||+++||.+|+ ||+|+|.++.|+|+||+|||+||++++.+.++.+.+++|+++|++.+. ..++.+|++++..
T Consensus 3 ~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~ 81 (249)
T PRK04328 3 KRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE 81 (249)
T ss_pred ceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHh
Confidence 479999999999999 999999999999999999999999999998888999999999988774 3455677754321
Q ss_pred -----ccC-------------------CCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHH
Q 014268 175 -----LLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 230 (427)
Q Consensus 175 -----~~~-------------------~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ 230 (427)
.+. .+...++++..+...+...+++++||||+..+.. . .. ...|
T Consensus 82 ~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~-~-------~~---~~~r- 149 (249)
T PRK04328 82 EEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYL-T-------KP---AMAR- 149 (249)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhc-C-------Ch---HHHH-
Confidence 111 2334566667777777777899999999998752 1 10 1122
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEee
Q 014268 231 MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVK 310 (427)
Q Consensus 231 ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K 310 (427)
..+..|.+.++++|+|+|+++|....- .+.++..+++.||.+|.|+.... ++ ..++.+.|.|
T Consensus 150 --~~~~~l~~~lk~~g~t~llt~e~~~~~----------~~~~~~~~~~~~D~vI~L~~~~~---~~---~~~R~l~I~K 211 (249)
T PRK04328 150 --SIVMQLKRVLSGLGCTAIFVSQVSVGE----------RGFGGPGVEHAVDGIIRLDLDEI---DG---ELKRSLIVWK 211 (249)
T ss_pred --HHHHHHHHHHHhCCCEEEEEECccccc----------cccCCCCcEEEEEEEEEEEEEec---CC---cEEEEEEEEE
Confidence 345666666777899999999976421 11223357999999999986431 11 2345799999
Q ss_pred cCCCCCC-CeeEEEEEeCCCCCch
Q 014268 311 NKLAPPF-KTAQFELEFGKGISRE 333 (427)
Q Consensus 311 ~R~g~~~-~~~~~~i~~~~Gi~~~ 333 (427)
.|..+.. ...+|+|. ++|+..+
T Consensus 212 ~Rg~~~~~~~~~~~It-~~Gi~v~ 234 (249)
T PRK04328 212 MRGTKHSMRRHPFEIT-DKGIVVY 234 (249)
T ss_pred ccCCCCCCceEEEEEc-CCCEEEE
Confidence 9987765 45789998 7898654
No 47
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.91 E-value=4.9e-24 Score=196.00 Aligned_cols=221 Identities=29% Similarity=0.453 Sum_probs=176.5
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCHH----HH
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LA 164 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~~----~~ 164 (427)
..+..|+||+..||.+|| |||+.=++++|+|.||+|||.++.+++..++.+ +++++|||+|.++.+. ++
T Consensus 92 ~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434|consen 92 KTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred hccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence 468899999999999999 999999999999999999999999999888754 4679999999999854 56
Q ss_pred HHhccc----cCccccCCCCCHHHHHHHHHH---HHhc-CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHH
Q 014268 165 ETIGVK----TENLLLAQPDCGEQALSLVDT---LIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 236 (427)
Q Consensus 165 ~~ig~~----~~~l~~~~~~~~~~~~~~~~~---l~~~-~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~ 236 (427)
.+++++ ++|+.+++..+.++.++.+.. .+.+ ++.+++||||+.+++ +..++++ |+ ...+++.+.+.+.
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-ge--LseRqqkLn~ml~ 246 (335)
T KOG1434|consen 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GE--LSERQQKLNQMLQ 246 (335)
T ss_pred HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-cc--HHHHHHHHHHHHH
Confidence 666766 457888887777777666543 4455 589999999999998 5777754 44 3467788888899
Q ss_pred HHHHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 315 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~ 315 (427)
+|.+.+++++++|+++||+..+++.. .|...+..|.||..|.|.+..|+.|+++. |..+..++-|+.--
T Consensus 247 kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgr---------g~eR~Akl~dSP~m- 316 (335)
T KOG1434|consen 247 KLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGR---------GDERVAKLYDSPSM- 316 (335)
T ss_pred HHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCC---------cceeeeecccCCCC-
Confidence 99999999999999999999988763 45556689999999999999999998753 23445556665533
Q ss_pred CCCeeEEEEEeCCCCC
Q 014268 316 PFKTAQFELEFGKGIS 331 (427)
Q Consensus 316 ~~~~~~~~i~~~~Gi~ 331 (427)
|...+.|.|. ..|+.
T Consensus 317 pe~e~~y~It-~~Gi~ 331 (335)
T KOG1434|consen 317 PEAEASYVIT-PGGIR 331 (335)
T ss_pred CcceEEEEEc-CCccc
Confidence 4456778887 77765
No 48
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.90 E-value=3.5e-22 Score=188.52 Aligned_cols=202 Identities=21% Similarity=0.249 Sum_probs=144.7
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCcc--
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTENL-- 174 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~l-- 174 (427)
+++||+++||.+|+ ||+++|++++|+|+||+|||+|+++++.+.+.++.+++|++.|++.+.. .++.+|++++++
T Consensus 1 ri~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~ 79 (229)
T TIGR03881 1 RLSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE 79 (229)
T ss_pred CcCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence 47999999999998 8999999999999999999999999998877788899999999887643 455677765532
Q ss_pred ----ccC-------------CCCCHHHHHHHHHHHHhcC--CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHH
Q 014268 175 ----LLA-------------QPDCGEQALSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 235 (427)
Q Consensus 175 ----~~~-------------~~~~~~~~~~~~~~l~~~~--~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L 235 (427)
.+. ...+.+++...++..+... ++++++|||++.+.. . ++ ...+ ..+
T Consensus 80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~----~~------~~~r---~~~ 145 (229)
T TIGR03881 80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-D----KP------AMAR---KYS 145 (229)
T ss_pred cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-c----Ch------HHHH---HHH
Confidence 111 1235677777777766553 467999999999863 1 11 1123 334
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 315 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~ 315 (427)
..|...+++.|+|+|+++|...... + ..+..+++.||.+|.|+... .++ ..++.+.|.|.|..+
T Consensus 146 ~~l~~~l~~~~~tvil~~~~~~~~~------~----~~~~~~~~l~D~vI~L~~~~---~~~---~~~R~i~i~K~R~~~ 209 (229)
T TIGR03881 146 YYLKRVLNRWNFTILLTSQYAITTS------Q----AFGFGIEHVADGIIRFRKVV---VDG---ELRRYLIVEKMRQTN 209 (229)
T ss_pred HHHHHHHHhCCCEEEEEecccccCC------C----CcccceEEEEeEEEEEEEec---cCC---cEEEEEEEEeccCCC
Confidence 5566666778999999999653211 1 01124899999999998643 111 235579999999875
Q ss_pred CC-CeeEEEEEeCCCCC
Q 014268 316 PF-KTAQFELEFGKGIS 331 (427)
Q Consensus 316 ~~-~~~~~~i~~~~Gi~ 331 (427)
.. ...+|+|..++|+.
T Consensus 210 ~~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 210 HDKRAWEIDIVPGKGLV 226 (229)
T ss_pred CCCceeEEEEcCCCceE
Confidence 43 45678887457875
No 49
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.89 E-value=2.5e-22 Score=189.19 Aligned_cols=202 Identities=28% Similarity=0.352 Sum_probs=143.3
Q ss_pred cccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCH--HHHHHhccccCc---
Q 014268 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTEN--- 173 (427)
Q Consensus 100 l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~--~~~~~ig~~~~~--- 173 (427)
+|||++.||.+|+ ||+|+|.++.|.|+||+|||+||++++.+.+.. +.+|+|++.+.+... ..++.+|++...
T Consensus 1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 6899999999998 999999999999999999999999999999888 999999999988764 334566766432
Q ss_pred ---cccCC---------CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014268 174 ---LLLAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (427)
Q Consensus 174 ---l~~~~---------~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~ 241 (427)
+.+.+ +.+.+.+...+...++..+++++||||+..+.. . .+ . ..+...++.|...
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~-~~----~-------~~~r~~l~~l~~~ 146 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-Y-DD----P-------EELRRFLRALIKF 146 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-S-SS----G-------GGHHHHHHHHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-c-CC----H-------HHHHHHHHHHHHH
Confidence 22211 346778888888777777789999999999831 1 11 1 1122456777777
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeee-ecceEEEEEeccccccCcccccceEEEEEeecCCCCCC-Ce
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF-KT 319 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~-~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~-~~ 319 (427)
+++.|+|+|+++|....... .....+++ .||.+|.|+.... ++ ...+.+.|.|.|..++. ..
T Consensus 147 l~~~~~t~llt~~~~~~~~~----------~~~~~i~~~l~D~vI~L~~~~~---~~---~~~R~l~I~K~Rg~~~~~~~ 210 (226)
T PF06745_consen 147 LKSRGVTTLLTSEMPSGSED----------DGTFGIEHYLADGVIELRYEEE---GG---RIRRRLRIVKMRGSRHSTGI 210 (226)
T ss_dssp HHHTTEEEEEEEEESSSSSS----------SSSTSHHHHHSSEEEEEEEEEE---TT---EEEEEEEEEEETTS----BE
T ss_pred HHHCCCEEEEEEccccCccc----------ccccchhhhcccEEEEEEEEee---CC---EEEEEEEEEEcCCCCCCCcE
Confidence 78889999999995442111 11225776 9999999986531 11 34568999999987653 56
Q ss_pred eEEEEEeCCCCCc
Q 014268 320 AQFELEFGKGISR 332 (427)
Q Consensus 320 ~~~~i~~~~Gi~~ 332 (427)
..|+|. +.|+..
T Consensus 211 ~~f~I~-~~Gi~i 222 (226)
T PF06745_consen 211 HPFEIT-PGGIEI 222 (226)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCeEEE
Confidence 789998 588753
No 50
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.88 E-value=3e-21 Score=181.72 Aligned_cols=204 Identities=23% Similarity=0.345 Sum_probs=140.6
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCc-----cc
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN-----LL 175 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~-----l~ 175 (427)
|++.||.+|+ ||+|+|++++|.|+||+|||+||++++.+.++.+.+|+||+.|++.++. .+..+|++.+. +.
T Consensus 1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 7899999998 9999999999999999999999999999988889999999999987753 34556665432 33
Q ss_pred cCCCC------CHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEE
Q 014268 176 LAQPD------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 249 (427)
Q Consensus 176 ~~~~~------~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tV 249 (427)
+.+.. ...++...++.++.+.+++++||||++.+.+. ... . .... ..+..+.+.+++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~--~~~---~---~~~r----~~l~~l~~~lk~~~~tv 147 (224)
T TIGR03880 80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETL--FDD---D---AERR----TELFRFYSSLRETGVTT 147 (224)
T ss_pred EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhh--cCC---H---HHHH----HHHHHHHHHHHhCCCEE
Confidence 33211 12344445566667778999999999988421 111 1 0111 23444555556679999
Q ss_pred EEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC-CCeeEEEEEeCC
Q 014268 250 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQFELEFGK 328 (427)
Q Consensus 250 I~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~-~~~~~~~i~~~~ 328 (427)
++++|.... +|..... ..+++.||.++.|+... .++ ....++.+.|.|+|..++ .....|+|. ++
T Consensus 148 ll~s~~~~~-------~~~~~~~--~~~~~l~D~vI~L~~~~---~~~-~~~~~r~l~v~K~Rg~~~~~~~~~~~i~-~~ 213 (224)
T TIGR03880 148 ILTSEADKT-------NVFASKY--GLIEYLADGVIILKYVR---NSD-LRDVRLAVEVVKMRRSKHSREIKPYEIT-DS 213 (224)
T ss_pred EEEEcccCC-------CCCccCC--CceEEEEeEEEEEeeee---ccc-CcceEEEEEEEEccCCCCCCceEEEEEc-CC
Confidence 999998652 1111111 15899999999995321 111 112344689999998754 456789998 88
Q ss_pred CCCch
Q 014268 329 GISRE 333 (427)
Q Consensus 329 Gi~~~ 333 (427)
|+..+
T Consensus 214 Gi~v~ 218 (224)
T TIGR03880 214 GITVY 218 (224)
T ss_pred cEEEe
Confidence 88643
No 51
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.86 E-value=7.4e-21 Score=198.23 Aligned_cols=208 Identities=19% Similarity=0.198 Sum_probs=156.3
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~ 173 (427)
...+++||+++||.+|| ||+++|.++.|.|+||+|||||+++++.+.++.+.+|+||++|++.++ ..++++|++.++
T Consensus 241 ~~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~ 319 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEE 319 (484)
T ss_pred cccccCCChHhHHHHhc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHH
Confidence 35579999999999999 999999999999999999999999999999999999999999999885 456778887654
Q ss_pred ------cccCC----CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 014268 174 ------LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243 (427)
Q Consensus 174 ------l~~~~----~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~ 243 (427)
+.+.. ....++.+..+...+...++++|||||++.+.. . +.. .+.+ ..+..|...++
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~-~-~~~--------~~~r---~~~~~l~~~lk 386 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR-G-VSN--------NAFR---QFVIGVTGYAK 386 (484)
T ss_pred HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH-h-cCH--------HHHH---HHHHHHHHHHh
Confidence 32221 234577777777778888899999999999863 1 211 1122 34556667777
Q ss_pred cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC-CeeEE
Q 014268 244 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF-KTAQF 322 (427)
Q Consensus 244 ~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~-~~~~~ 322 (427)
+.|+|+++++......+. ...+.. .+++.||.+++|+..+. +. ..++.+.|.|.|.++.. ...+|
T Consensus 387 ~~~it~~~t~~~~~~~~~------~~~~~~--~~s~l~D~ii~l~~~e~---~g---~~~r~i~V~K~R~~~~~~~~~~~ 452 (484)
T TIGR02655 387 QEEITGFFTNTSDQFMGS------HSITDS--HISTITDTILMLQYVEI---RG---EMSRAINVFKMRGSWHDKGIREF 452 (484)
T ss_pred hCCCeEEEeecccccccC------CccCCC--CeeEeeeEEEEEEEEec---CC---EEEEEEEEEEccCCCCCCceEEE
Confidence 889999999775543221 112212 48999999999975431 11 24557889999987644 56789
Q ss_pred EEEeCCCCCc
Q 014268 323 ELEFGKGISR 332 (427)
Q Consensus 323 ~i~~~~Gi~~ 332 (427)
.|. ++||..
T Consensus 453 ~It-~~Gi~v 461 (484)
T TIGR02655 453 MIS-DKGPEI 461 (484)
T ss_pred EEc-CCcEEE
Confidence 999 899864
No 52
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.86 E-value=1.1e-20 Score=176.27 Aligned_cols=224 Identities=26% Similarity=0.364 Sum_probs=159.9
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCHHH----HHH
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSL----AET 166 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~~~----~~~ 166 (427)
...++||...||..|+ |||+-+.+++|+|++|+|||.||++++..++.+ +++++||++|.++.-.+ ++.
T Consensus 81 ~~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~ 159 (351)
T KOG1564|consen 81 RSKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHT 159 (351)
T ss_pred chhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHh
Confidence 3569999999999999 999999999999999999999999999888753 57899999999988322 221
Q ss_pred hc----c-----cc----CccccCCCCCHHHHHHHHHH----HHhcCCccEEEEecccccCCCCccCCcccc-hhHHHHH
Q 014268 167 IG----V-----KT----ENLLLAQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGD-AHMAMQA 228 (427)
Q Consensus 167 ig----~-----~~----~~l~~~~~~~~~~~~~~~~~----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~-~~~~~~a 228 (427)
+- . -. +++++....+++..+.++.. +..++.+++|||||+++.+ +.+++..+.+ +.+....
T Consensus 160 ~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~~r~~~l 238 (351)
T KOG1564|consen 160 LPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLKKRARHL 238 (351)
T ss_pred cccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhhhHHHHH
Confidence 11 0 01 12444455566666666544 4567789999999999998 5666543332 2233444
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCC-------e-------eeccCCceeeeecceEEEEEeccccc
Q 014268 229 RLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGP-------T-------EVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 229 r~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~-------~-------~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
..++..|+.|+. +++++||++||+.+.++.. ++.. . ..|+.|-.|.+...+|+++.|.. +
T Consensus 239 ~rla~~Lr~LA~---~~~~aVV~~NQVtd~~~~~-~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~--k 312 (351)
T KOG1564|consen 239 FRLAGKLRQLAS---KFDLAVVCANQVTDRVETS-DDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRST--K 312 (351)
T ss_pred HHHHHHHHHHHH---hcCccEEEeeccccccccc-cccCCccccchhhccccccccccccceeccccceeeeeeecc--c
Confidence 455566666655 4899999999999986652 1111 1 57889999999999999999943 2
Q ss_pred cCcc--cccceEEEEEeecCCCCCCCeeEEEEEeCCCC
Q 014268 295 KGEE--TIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 330 (427)
Q Consensus 295 ~~~~--~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi 330 (427)
.++. .....+.++|+-+.+.||.. +.|.|. ..||
T Consensus 313 ~~~sa~~~~~~R~l~VvySp~~p~~~-~~~~It-~eGI 348 (351)
T KOG1564|consen 313 NCDSAVSRSAKRTLRVVYSPYLPPSS-CEFMIT-AEGI 348 (351)
T ss_pred cccchhhcccceEEEEEecCCCCCcc-eEEEEe-cceE
Confidence 2111 11234589999999888753 567777 6665
No 53
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.86 E-value=1.3e-20 Score=196.29 Aligned_cols=205 Identities=18% Similarity=0.224 Sum_probs=143.9
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCH--HHHHHhccccCcc-
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTENL- 174 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~--~~~~~ig~~~~~l- 174 (427)
++|||+++||.+|+ ||||+|.++.|.|+||+||||||++++.+.+.+ +.+++|++.|++.+. ..++.+|++++.+
T Consensus 2 r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~ 80 (484)
T TIGR02655 2 KIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLV 80 (484)
T ss_pred cCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHh
Confidence 58999999999999 999999999999999999999999999876665 889999999987764 4567788876532
Q ss_pred -----ccCC------------CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHH
Q 014268 175 -----LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (427)
Q Consensus 175 -----~~~~------------~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~ 237 (427)
.+.+ .......+..+...++.++.+.++||++..+..... .. .. ..+.+..
T Consensus 81 ~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~------~~---~~---~r~~l~~ 148 (484)
T TIGR02655 81 DEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD------AV---SV---VRREIFR 148 (484)
T ss_pred hcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC------ch---HH---HHHHHHH
Confidence 2221 123455555566667788999999999988752111 00 11 1123444
Q ss_pred HHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 317 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~ 317 (427)
+.+.+++.|+|+|+++|....... ....+ ..++.||.+|.|+... .+. ...+.+.|.|.|..+..
T Consensus 149 Li~~L~~~g~TvLLtsh~~~~~~~-------~~~~~--~~e~laDgVI~L~~~~---~~~---~~~R~l~I~K~Rgs~~~ 213 (484)
T TIGR02655 149 LVARLKQIGVTTVMTTERIEEYGP-------IARYG--VEEFVSDNVVILRNVL---EGE---RRRRTLEILKLRGTSHM 213 (484)
T ss_pred HHHHHHHCCCEEEEEecCcccccc-------cccCC--ceeEeeeeEEEEEEEe---cCC---EEEEEEEEEECCCCCcC
Confidence 555556679999999997654221 11111 3489999999998532 121 12458999999976543
Q ss_pred -CeeEEEEEeCCCCCc
Q 014268 318 -KTAQFELEFGKGISR 332 (427)
Q Consensus 318 -~~~~~~i~~~~Gi~~ 332 (427)
....|+|. ++|+..
T Consensus 214 ~~~~~~~It-~~Gi~v 228 (484)
T TIGR02655 214 KGEYPFTIT-DHGINI 228 (484)
T ss_pred CceEEEEEc-CCcEEE
Confidence 34678887 677764
No 54
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.86 E-value=1.9e-20 Score=196.81 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=150.2
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCH--HHHHHhcccc
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKT 171 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~--~~~~~ig~~~ 171 (427)
..+.++|||+++||.+|+ ||+|+|++++|+|+||+|||+||++++.+.+.. +.+|+||++|++.++ ..+..+|+++
T Consensus 8 ~~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDL 86 (509)
T ss_pred CCCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCH
Confidence 367899999999999998 899999999999999999999999999888776 889999999998875 3445677765
Q ss_pred Cccc------cCC------------CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH
Q 014268 172 ENLL------LAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (427)
Q Consensus 172 ~~l~------~~~------------~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~ 233 (427)
..+. +.. ....+.++..+...+...+++.+||||++.+... +.. . ..+..
T Consensus 87 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--~d~----~------~~~r~ 154 (509)
T PRK09302 87 QKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSG--FSN----E------AVVRR 154 (509)
T ss_pred HHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhh--ccC----H------HHHHH
Confidence 4321 111 1134566667777777788999999999987521 110 0 11234
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCC
Q 014268 234 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 313 (427)
Q Consensus 234 ~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~ 313 (427)
.+..|.+.+++.|+|+|+++|....... ....+ ..++.||.++.|.... .++ ...+.+.|.|.|.
T Consensus 155 ~l~~L~~~Lk~~g~TvLlt~~~~~~~~~-------~~~~~--~~~~laDgVI~L~~~~---~~~---~~~R~l~I~K~Rg 219 (509)
T PRK09302 155 ELRRLFAWLKQKGVTAVITGERGDEYGP-------LTRYG--VEEFVSDCVIILRNRL---EGE---KRTRTLRILKYRG 219 (509)
T ss_pred HHHHHHHHHHhCCCEEEEEECCccCcCC-------ccccC--ceEEEeeEEEEEeEEc---cCC---eEEEEEEEEECCC
Confidence 5666667777789999999997652111 11111 4588999999998542 111 2346899999997
Q ss_pred CCCC-CeeEEEEEeCCCCCch
Q 014268 314 APPF-KTAQFELEFGKGISRE 333 (427)
Q Consensus 314 g~~~-~~~~~~i~~~~Gi~~~ 333 (427)
.+.. ....|+|. +.|+..+
T Consensus 220 ~~~~~~~~~f~I~-~~Gi~v~ 239 (509)
T PRK09302 220 TTHGKNEYPFTIT-EDGISVL 239 (509)
T ss_pred CCcCCccEEEEEC-CCcEEEE
Confidence 6543 35678886 7777643
No 55
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.85 E-value=2.6e-20 Score=176.52 Aligned_cols=207 Identities=20% Similarity=0.267 Sum_probs=144.8
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~ 173 (427)
....++||++.||.+|+ ||+|+|+++.|+|+||+|||+|+++++.+.++.+.+|+|++.|++.+.. .+..+|++...
T Consensus 3 ~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~ 81 (234)
T PRK06067 3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81 (234)
T ss_pred CceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhH
Confidence 46689999999999999 9999999999999999999999999999888889999999999877643 24456766543
Q ss_pred cc------cC---------CCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHH
Q 014268 174 LL------LA---------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (427)
Q Consensus 174 l~------~~---------~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L 238 (427)
.. +. .+...++++..+...+.+.++++++||++..+... . . . ..+...+..+
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~----~-~------~~~~~~l~~l 148 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--A----E-E------DDILNFLTEA 148 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--C----C-H------HHHHHHHHHH
Confidence 21 11 12234667777777777778999999999976421 0 0 1 1122333333
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC-
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF- 317 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~- 317 (427)
+.+++.++++++++|.....+. .. ..+.+.+|.++.|+... .++ ..++.+.|.|.|..++.
T Consensus 149 -~~l~~~g~tvllt~~~~~~~~~---------~~--~~~~~l~DgvI~L~~~~---~~~---~~~r~l~i~K~Rg~~~~~ 210 (234)
T PRK06067 149 -KNLVDLGKTILITLHPYAFSEE---------LL--SRIRSICDVYLKLRAEQ---IGG---RYVKVLEVVKLRGARKTT 210 (234)
T ss_pred -HHHHhCCCEEEEEecCCcCCHH---------HH--HHHHhheEEEEEEEeec---cCC---EEeEEEEEEhhcCCCCCC
Confidence 3334468999999986543111 00 13688899999997532 111 23457999999977654
Q ss_pred -CeeEEEEEeCCCCCchh
Q 014268 318 -KTAQFELEFGKGISRES 334 (427)
Q Consensus 318 -~~~~~~i~~~~Gi~~~~ 334 (427)
....|.|.-+.|+..+.
T Consensus 211 ~~~~~~~I~~~~Gi~v~~ 228 (234)
T PRK06067 211 GNIISFDVDPAFGIKIIP 228 (234)
T ss_pred CCEEEEEEcCCCCeEEEE
Confidence 45688887335887553
No 56
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.84 E-value=8.3e-20 Score=191.93 Aligned_cols=208 Identities=20% Similarity=0.273 Sum_probs=155.0
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~ 173 (427)
...+++||+++||.+|+ ||+++|.+++|.|+||+|||+|+++++.+.+..+.+++|++.|++.+. ..+..+|++++.
T Consensus 251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~ 329 (509)
T PRK09302 251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK 329 (509)
T ss_pred ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence 35689999999999998 999999999999999999999999999999989999999999988764 345667877543
Q ss_pred c------ccC--C--CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 014268 174 L------LLA--Q--PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243 (427)
Q Consensus 174 l------~~~--~--~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~ 243 (427)
. .+. . ....++.+..+...+...+++++||||++.+.... .. ..+.+.++.|...++
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~------~~~~~~l~~l~~~~k 396 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SL------NEFRQFVIRLTDYLK 396 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CH------HHHHHHHHHHHHHHH
Confidence 2 111 1 22456667777777777889999999999886311 11 123456777778888
Q ss_pred cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC-CCCeeEE
Q 014268 244 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP-PFKTAQF 322 (427)
Q Consensus 244 ~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~-~~~~~~~ 322 (427)
++|+|+|+++|.....+. +.... . .+++.||.+|.|+.... +. ..++.+.|.|.|..+ +.....|
T Consensus 397 ~~~~t~l~t~~~~~~~g~-----~~~~~-~--~~~~l~D~vI~L~~~~~---~~---~~~R~l~I~K~Rg~~~~~~~~~f 462 (509)
T PRK09302 397 SEEITGLFTNLTPDFMGS-----HSITE-S--HISSLTDTWILLQYVEI---NG---EMNRALYVLKMRGSWHSNQIREF 462 (509)
T ss_pred hCCCeEEEEeccccccCC-----CCCCc-C--ceEEeeeEEEEEEEeec---CC---eeEEEEEEEEcCCCCCCCceEEE
Confidence 899999999987654221 10111 1 48999999999986431 11 234589999999765 3456789
Q ss_pred EEEeCCCCCc
Q 014268 323 ELEFGKGISR 332 (427)
Q Consensus 323 ~i~~~~Gi~~ 332 (427)
+|. +.|+..
T Consensus 463 ~It-~~Gi~v 471 (509)
T PRK09302 463 VIT-DKGIHI 471 (509)
T ss_pred EEe-CCcEEE
Confidence 998 889864
No 57
>PRK05973 replicative DNA helicase; Provisional
Probab=99.81 E-value=9.3e-20 Score=171.57 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=105.7
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCcc----cc--CC
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTENL----LL--AQ 178 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~l----~~--~~ 178 (427)
+|.++| ||++|++++|+|+||+|||+|+++++.+.++.|.+++||++|++.+.. .+..+|++.+++ .+ ..
T Consensus 54 ~~~l~G--Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d 131 (237)
T PRK05973 54 AEELFS--QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSD 131 (237)
T ss_pred HHHhcC--CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCC
Confidence 788776 999999999999999999999999999998888899999999997643 345567765543 11 12
Q ss_pred CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
+.+.++ .+..++...++++|||||++.+... .. . .++...++.|...++++|+|||+++|+++.
T Consensus 132 ~~~~~~---ii~~l~~~~~~~lVVIDsLq~l~~~--~~-----~------~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 132 AICADY---IIARLASAPRGTLVVIDYLQLLDQR--RE-----K------PDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcHHHHhhc--cc-----c------hhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 223333 3444555567899999999998521 00 0 123345666777778899999999999999
Q ss_pred ccccccCCCeeeccC
Q 014268 259 LSTFGFGGPTEVTCG 273 (427)
Q Consensus 259 v~~~~~~~~~~~~~g 273 (427)
++. +++++|..
T Consensus 196 ~e~----~~~~~P~l 206 (237)
T PRK05973 196 FDP----SAKPLPDI 206 (237)
T ss_pred ccc----CCCCCCCh
Confidence 876 44445533
No 58
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.78 E-value=7.4e-18 Score=159.25 Aligned_cols=204 Identities=19% Similarity=0.288 Sum_probs=135.5
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCcc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTENL 174 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~l 174 (427)
+..+.+++..||.+++ ||+++|++++|.|+||+||||||++++.+.++++.+++|++.+.+.... .++.+|++++.+
T Consensus 3 ~~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~ 81 (230)
T PRK08533 3 LAKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKK 81 (230)
T ss_pred eEEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHH
Confidence 4568899999999999 9999999999999999999999999999998888999999999877643 334677765432
Q ss_pred ------ccCC--C--CCH---HHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014268 175 ------LLAQ--P--DCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (427)
Q Consensus 175 ------~~~~--~--~~~---~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~ 241 (427)
.+.. + ... +..+..+.......++++++||++..... .. .+. ...+.+.+.++.+.
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~-----~d~---~~~~~l~~~l~~l~-- 150 (230)
T PRK08533 82 LISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-ND-----ASE---VAVNDLMAFFKRIS-- 150 (230)
T ss_pred hhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CC-----cch---HHHHHHHHHHHHHH--
Confidence 1111 1 111 22222222223345789999999998652 10 011 12233444444443
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC--CCe
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP--FKT 319 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~--~~~ 319 (427)
+.|++++++++.... .. .. .. .+++.||.+|.|+... .++ ..++.+.|.|.|..+. +..
T Consensus 151 --~~g~tvi~t~~~~~~-~~-------~~-~~--~~~~~~DgvI~L~~~~---~~~---~~~R~i~V~KmR~~~~~~~~~ 211 (230)
T PRK08533 151 --SLNKVIILTANPKEL-DE-------SV-LT--ILRTAATMLIRLEVKV---FGG---DLKNSAKIVKYNMAKGSFQKS 211 (230)
T ss_pred --hCCCEEEEEeccccc-cc-------cc-ce--eEEEeeeEEEEEEEee---cCC---EEEEEEEEEEecCCccccCCE
Confidence 348888777664421 11 01 11 4899999999998643 111 2345799999998554 346
Q ss_pred eEEEEEeCCCCC
Q 014268 320 AQFELEFGKGIS 331 (427)
Q Consensus 320 ~~~~i~~~~Gi~ 331 (427)
.+|+|..+.|+.
T Consensus 212 ~~f~i~~~~g~~ 223 (230)
T PRK08533 212 IPFRVEPKIGLA 223 (230)
T ss_pred EEEEEcCCccEE
Confidence 788888777764
No 59
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.75 E-value=7.3e-17 Score=155.35 Aligned_cols=209 Identities=25% Similarity=0.378 Sum_probs=146.7
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCcc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL 174 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~l 174 (427)
+.++|||++.||.+++ ||+|+|.+++|.|+||+|||+|++|++.+.++.|.+|+|++.+.+... ..+.++|++++..
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence 4679999999999999 999999999999999999999999999999999999999999988773 3455577775422
Q ss_pred c---------------------cCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH
Q 014268 175 L---------------------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (427)
Q Consensus 175 ~---------------------~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~ 233 (427)
. ...+...+.+...+.......+...+|+|++..+.-. +. .. ...+ .
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~--~~----~~---~~~r---~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLY--LN----DP---ALVR---R 148 (260)
T ss_pred hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhh--cC----ch---HHHH---H
Confidence 1 0112345566667777777777899999999965421 11 11 1112 4
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCC
Q 014268 234 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 313 (427)
Q Consensus 234 ~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~ 313 (427)
.+..+.+.+++.++|.+++++....... . . ...++.+|.++.|..... . ....++.+.+.|.|.
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~~-----~----~--~~~~~~vdgvI~l~~~~~--~---~~~~r~~~~i~k~r~ 212 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEERG-----E----S--GVEEYIVDGVIRLDLKEI--E---GGGDRRYLRILKMRG 212 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEecccccCCC-----c----c--ceEEEEEEEEEEEeeecc--c---CceEEEEEEEEeccc
Confidence 4555666666678999999886432111 1 0 146679999999986431 1 112233788999998
Q ss_pred CCC-CCeeEEEEEeCCCCCchh
Q 014268 314 APP-FKTAQFELEFGKGISRES 334 (427)
Q Consensus 314 g~~-~~~~~~~i~~~~Gi~~~~ 334 (427)
.++ .....|.|.-..|+..+.
T Consensus 213 ~~~~~~~~~~~i~~g~gi~i~~ 234 (260)
T COG0467 213 TPHSLKVIPFEITDGEGIVVYP 234 (260)
T ss_pred cccCCceeceEEecCCcEEEec
Confidence 554 467788888436765443
No 60
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.63 E-value=9.7e-15 Score=132.93 Aligned_cols=167 Identities=19% Similarity=0.244 Sum_probs=112.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccCcc------ccCCC----CCH------
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL------LLAQP----DCG------ 182 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~~l------~~~~~----~~~------ 182 (427)
+++|.|+||+|||+|+++++...++.+.+|+|+++|++.+. ..+..+|++.+.+ .+.+. ...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 47899999999999999999999988999999999998774 3455667765432 11111 011
Q ss_pred HHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccccc
Q 014268 183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 262 (427)
Q Consensus 183 ~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~ 262 (427)
.+++..+...+...+++++|||+++.+... + .. .. ...+..+...+++.|+|+|+++|.....+.
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~---~~---~~----~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~- 145 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----E---QS---TA----RLEIRRLLFALKRFGVTTLLTSEQSGLEGT- 145 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----C---hH---HH----HHHHHHHHHHHHHCCCEEEEEeccccCCCc-
Confidence 133445555555678999999999988631 0 00 11 123444444455569999999997764221
Q ss_pred ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC
Q 014268 263 GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 316 (427)
Q Consensus 263 ~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~ 316 (427)
..+...+++.||.++.|++... ++ ..++.+.|.|+|.+++
T Consensus 146 --------~~~~~~~~~~aD~ii~l~~~~~---~~---~~~r~l~i~K~R~~~~ 185 (187)
T cd01124 146 --------GFGGGDVEYLVDGVIRLRLDEE---GG---RLRRSLSVVKMRGGPH 185 (187)
T ss_pred --------ccCcCceeEeeeEEEEEEEEcc---CC---EEEEEEEEEEccCCCC
Confidence 1122368999999999987631 11 1345799999997765
No 61
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.60 E-value=1.4e-15 Score=148.31 Aligned_cols=219 Identities=29% Similarity=0.460 Sum_probs=153.2
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH----HHHHHhcccc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKT 171 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~----~~~~~ig~~~ 171 (427)
....++||..+||.+|+ ||++-|.+++|+||||+|||.||+.++...---+..++|+|.+..+.. .++.+.+...
T Consensus 89 ~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~ 167 (326)
T KOG1433|consen 89 ELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRG 167 (326)
T ss_pred cceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhh
Confidence 46789999999999999 999999999999999999999998887766333567999999985442 3444444433
Q ss_pred C----ccccCCCCCHHHHH---HHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhc
Q 014268 172 E----NLLLAQPDCGEQAL---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244 (427)
Q Consensus 172 ~----~l~~~~~~~~~~~~---~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~ 244 (427)
. ++.+......++.+ ..+...+.+....++++|+..... ...+.+ .++ .....+.++..++.|.+.+.+
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~--~~a~~~~~~~~~~~l~~la~~ 243 (326)
T KOG1433|consen 168 RDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGE--LSARQMLLAKFLRSLKKLADE 243 (326)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccc--hHHHHHHHHHHHHHHHHHHHh
Confidence 3 33222222222211 112223345577899999999987 455544 222 224445667788888888888
Q ss_pred CCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEE
Q 014268 245 SQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFE 323 (427)
Q Consensus 245 ~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~ 323 (427)
++.+||+.||+...+... +|+...+.|.+|..|.|..++++.+.+. + +-++.+++.++++.|+. ...|.
T Consensus 244 ~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~----~-----g~~~~~k~~~s~~l~e~-~~~~~ 313 (326)
T KOG1433|consen 244 FGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKG----K-----GERRICKIADSPCLPEA-EAVFA 313 (326)
T ss_pred cCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhc----c-----ccchhhhhhcCCCCCcc-hhHHH
Confidence 999999999999988764 5666568889999999999999887642 1 22346778888887663 34455
Q ss_pred EEeCCCC
Q 014268 324 LEFGKGI 330 (427)
Q Consensus 324 i~~~~Gi 330 (427)
|. ..|+
T Consensus 314 i~-~~g~ 319 (326)
T KOG1433|consen 314 IT-EDGI 319 (326)
T ss_pred HH-hhhh
Confidence 54 4444
No 62
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.57 E-value=4.3e-14 Score=128.34 Aligned_cols=201 Identities=23% Similarity=0.324 Sum_probs=138.3
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHH--HHHhccccCcc--
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--AETIGVKTENL-- 174 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~--~~~ig~~~~~l-- 174 (427)
-+++|-++||+.|| ||+|-|+++.|-|++|+|||.|+.+++.++...+..+.|+++|++....+ +..++++..+.
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence 58999999999999 99999999999999999999999999999999999999999998766433 33455554322
Q ss_pred ----ccCC---------CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014268 175 ----LLAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (427)
Q Consensus 175 ----~~~~---------~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~ 241 (427)
.+.. ......+++.+-...+..+.++++|||+....... +. ..+..+...+++|..
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~---~~vl~fm~~~r~l~d- 156 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SE---DAVLNFMTFLRKLSD- 156 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cH---HHHHHHHHHHHHHHh-
Confidence 2221 11234555555555566788999999999886321 11 223333444555544
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC--CCe
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP--FKT 319 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~--~~~ 319 (427)
.|.+||++-|...--+. ... -+...||+.++|+..+. ++ ..+..+.+.|-|.++. +..
T Consensus 157 ---~gKvIilTvhp~~l~e~--------~~~---rirs~~d~~l~L~~~~~---Gg---~~~~~~~i~K~~ga~~s~~~~ 216 (235)
T COG2874 157 ---LGKVIILTVHPSALDED--------VLT---RIRSACDVYLRLRLEEL---GG---DLIKVLEIVKYRGARKSFQNI 216 (235)
T ss_pred ---CCCEEEEEeChhhcCHH--------HHH---HHHHhhheeEEEEhhhh---CC---eeeEEEEEeeecCchhhcCCc
Confidence 49999999885432111 111 37788999999986542 11 1234778899887654 345
Q ss_pred eEEEEEeCCCCC
Q 014268 320 AQFELEFGKGIS 331 (427)
Q Consensus 320 ~~~~i~~~~Gi~ 331 (427)
..|++...-|+.
T Consensus 217 I~F~V~P~~Glk 228 (235)
T COG2874 217 ISFRVEPGFGLK 228 (235)
T ss_pred eeEEecCCCceE
Confidence 678887555653
No 63
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.57 E-value=8.4e-15 Score=134.19 Aligned_cols=151 Identities=24% Similarity=0.335 Sum_probs=80.8
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh----------cCceEEEEeCCCCCCHHH--
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDPSL-- 163 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~----------~~~~vv~is~E~~~~~~~-- 163 (427)
....++++++.+|.+++ |++++|++++|+|+||+|||+|+++++..++. .+.+|+|+++|++..+..
T Consensus 10 ~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~r 88 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARR 88 (193)
T ss_dssp ---HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHH
T ss_pred hhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHH
Confidence 46679999999999998 88899999999999999999999999999876 457899999999864221
Q ss_pred HHHhcccc---Cc-----------cccCCCC----CHHHHHHHHHHHHhc-CCccEEEEecccccCCCCccCCcccchhH
Q 014268 164 AETIGVKT---EN-----------LLLAQPD----CGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHM 224 (427)
Q Consensus 164 ~~~ig~~~---~~-----------l~~~~~~----~~~~~~~~~~~l~~~-~~~~lvvIDsl~~l~~~~~~~~~~g~~~~ 224 (427)
...+.... ++ +.+.... .....++.+...+.. .++++||||+++.+.+. .. + .
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~-----~--~ 160 (193)
T PF13481_consen 89 LRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-DE-----N--S 160 (193)
T ss_dssp HHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--T-----T---
T ss_pred HHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CC-----C--C
Confidence 11111111 11 1111111 123344445555555 67999999999999853 11 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 225 AMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 225 ~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
....+.+...|++ .++++|++||+++|.++.
T Consensus 161 ~~~~~~~~~~l~~---la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 161 NSAVAQLMQELKR---LAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp HHHHHHHHHHHHH---HHHHH--EEEEEEEE---
T ss_pred HHHHHHHHHHHHH---HHHHcCCEEEEEECCCCC
Confidence 1111334444444 445579999999998764
No 64
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.53 E-value=3.5e-14 Score=132.03 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=109.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|+++.|.||+||||||| |+++..+.++..+.++|.+..... ..+.+.+|+.+|++.+.+..++.+.+.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTL-Lniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 477999999999999999999 999999998888888888753322 245667999999999999999888876
Q ss_pred HHHHHHhcC----------CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------------HH
Q 014268 188 LVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LR 236 (427)
Q Consensus 188 ~~~~l~~~~----------~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------------L~ 236 (427)
+-..+.... -...+-+.....-....+++| |++||...||+++.. +.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSG--GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCH--HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 421110000 011222222222122467787 899999999998753 44
Q ss_pred HHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
-|....++.|+|||++||.. .+...||.++++..+.
T Consensus 184 ll~~~~~~~g~tii~VTHd~-------------------~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDP-------------------ELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCH-------------------HHHHhCCEEEEEeCCe
Confidence 44444466799999999943 2566789999987653
No 65
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=4.5e-14 Score=128.59 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=109.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
-+.+|++++|+||+||||||| |.++..+-..+.+.++|+++.... ..+.+.+|+++|++.+++..++-+++....
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTl-LRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTL-LRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHH-HHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 367999999999999999999 889998888889999999975543 356778999999999888877665543321
Q ss_pred HHHh-----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHH
Q 014268 191 TLIR-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 239 (427)
Q Consensus 191 ~l~~-----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~ 239 (427)
..+. ..-+..|-+-.-...+| ..++| |++||...||+++.. .-.+.
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm 179 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHH
Confidence 1110 00012222222333343 56676 788888888887643 22333
Q ss_pred HHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 240 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 240 ~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+.+.+.|.|+|+++|-+. | ....||.++|+..+....++
T Consensus 180 ~~LA~eGmTMivVTHEM~------F------------Ar~VadrviFmd~G~iie~g 218 (240)
T COG1126 180 KDLAEEGMTMIIVTHEMG------F------------AREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHHcCCeEEEEechhH------H------------HHHhhheEEEeeCCEEEEec
Confidence 334445999999999654 2 34468999999887544443
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.50 E-value=5.7e-13 Score=117.47 Aligned_cols=157 Identities=25% Similarity=0.340 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHh----ccccCccccCCC----CCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI----GVKTENLLLAQP----DCGEQALSLVDTL 192 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~i----g~~~~~l~~~~~----~~~~~~~~~~~~l 192 (427)
+++|+|+||+|||+|+..++..+...++.++|++.+........... ....++..+... .........+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 47899999999999999999999888899999999988764432211 111222222221 1233333334445
Q ss_pred HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc
Q 014268 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 272 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~ 272 (427)
....+++++|||+++.+.+.... . .......+...+..|...+++.+++||+++|.....+. .+.. +.
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~-~------~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~----~~~~-~~ 148 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALRE-I------REGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG----DPRL-TR 148 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHH-H------HhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc----Cccc-cc
Confidence 56678999999999988631110 0 00111345567888888888889999999999886543 2211 45
Q ss_pred CCceeeeecceEEEEEe
Q 014268 273 GGNALKFYASVRLNIKR 289 (427)
Q Consensus 273 gG~~ie~~ad~vi~L~r 289 (427)
++..++++||.++.|.|
T Consensus 149 ~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 149 GAQNLEDIADTVIVLSR 165 (165)
T ss_pred CccceeeecceEEEEeC
Confidence 56689999999999864
No 67
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.48 E-value=1.1e-13 Score=128.69 Aligned_cols=137 Identities=23% Similarity=0.317 Sum_probs=108.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-+++|+++++.||+||||||+ |.++..+..+..+.++|+++...+ ..+.+.+||+.|.+.+++..++.+++..+..
T Consensus 23 ~I~~gef~vliGpSGsGKTTt-LkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTT-LKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred EecCCeEEEEECCCCCcHHHH-HHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 588999999999999999999 999999999999999999998766 4688899999999999999999988877665
Q ss_pred HHh----------cCCccEEEEec--ccccCCCCccCCcccchhHHHHHHHHHHH------------------------H
Q 014268 192 LIR----------SGSVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQA------------------------L 235 (427)
Q Consensus 192 l~~----------~~~~~lvvIDs--l~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------------L 235 (427)
+.. ..-..++-+|. +..-+ ..+++| |++|+...+|+++.. +
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-P~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRY-PHELSG--GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-chhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 531 01134555554 23333 378888 899999999998754 3
Q ss_pred HHHHHHhhcCCcEEEEEecCCcc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~ 258 (427)
..|. ++.+.|||+++|..++
T Consensus 179 ~~lq---~~l~kTivfVTHDidE 198 (309)
T COG1125 179 KELQ---KELGKTIVFVTHDIDE 198 (309)
T ss_pred HHHH---HHhCCEEEEEecCHHH
Confidence 3343 4469999999998775
No 68
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.45 E-value=1.4e-13 Score=130.55 Aligned_cols=162 Identities=20% Similarity=0.249 Sum_probs=105.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-+++|++++|.|||||||||| |+++.++.++..+.++++++...+ ..+++.+++.+|......+.++.++...-+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTL-Lk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTL-LKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHH-HHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 478999999999999999999 888888888888999999987655 6789999999887543333333322221110
Q ss_pred H----Hh---c-------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------------HH
Q 014268 192 L----IR---S-------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LR 236 (427)
Q Consensus 192 l----~~---~-------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------------L~ 236 (427)
- .. . .-+..+-+..+..-. -.+++| |++|+...|+++++. +.
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ 179 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-VDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-ccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH
Confidence 0 00 0 000111111221111 244555 677777777776654 33
Q ss_pred HHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcc
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 298 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~ 298 (427)
.+.+..++.|.|||++.|... ....+||.++.|+.+..+..|.+
T Consensus 180 ll~~l~~~~~~tvv~vlHDlN------------------~A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 180 LLRDLNREKGLTVVMVLHDLN------------------LAARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HHHHHHHhcCCEEEEEecCHH------------------HHHHhCCEEEEEECCeEEeecCc
Confidence 444444567999999999543 24567999999999888777653
No 69
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.43 E-value=4.9e-12 Score=120.30 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=112.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhh------------cCceEEEEeCCCCCCH--HHHHHhcccc------Ccccc--
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQR------------QGGYCVFIDAEHALDP--SLAETIGVKT------ENLLL-- 176 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~------------~~~~vv~is~E~~~~~--~~~~~ig~~~------~~l~~-- 176 (427)
|.+.+|+|+||+|||+|+++++..++. .+++|+|+++|++.+. .+...++... .++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999988752 3567999999998762 2222222111 11111
Q ss_pred --------CCC---CCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcC
Q 014268 177 --------AQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS 245 (427)
Q Consensus 177 --------~~~---~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~ 245 (427)
... .....+..++.. +...+++++|||++..+....+.+ . ...+.+ +..|.+.+++.
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~~~~~~~d-----~---~~~~~~---~~~L~~~a~~~ 148 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFHGVSEND-----N---GAMDAV---IKALRRIAAQT 148 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHH-HHhcCCCEEEECChHHhCCCCcCC-----H---HHHHHH---HHHHHHHHHHh
Confidence 111 112222222222 234679999999988774211111 1 122333 34444444557
Q ss_pred CcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc-----CcccccceEEEEEeecCCC-CCCCe
Q 014268 246 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK-----GEETIGSQIAVKIVKNKLA-PPFKT 319 (427)
Q Consensus 246 ~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~-----~~~~~g~~~~l~i~K~R~g-~~~~~ 319 (427)
|++||+++|.++.-... ........|..++...++.++.+.+...-.. ..+.....+.+.+.|+.++ |+...
T Consensus 149 g~avl~v~H~~K~~~~~--~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~ 226 (239)
T cd01125 149 GAAILLVHHVRKGSAKD--GDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEAD 226 (239)
T ss_pred CCEEEEEeccCcccccC--cccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCC
Confidence 99999999998763320 0012334556678888899999987542111 1122233345667888887 66554
Q ss_pred eEEEEE
Q 014268 320 AQFELE 325 (427)
Q Consensus 320 ~~~~i~ 325 (427)
..|+..
T Consensus 227 ~w~~~~ 232 (239)
T cd01125 227 RWYRRN 232 (239)
T ss_pred eEEEEc
Confidence 555443
No 70
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=8.5e-13 Score=126.16 Aligned_cols=232 Identities=18% Similarity=0.206 Sum_probs=143.0
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCcccc
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLL 176 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~ 176 (427)
.+..||.+-= -+++|++++|.|++|+||||| +.++..+.++..+.+++++.+... +...+++|+.+|++.+
T Consensus 18 ~~~al~~vsL--~I~~GeI~GIIG~SGAGKSTL-iR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSL--EIPKGEIFGIIGYSGAGKSTL-LRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceE--EEcCCcEEEEEcCCCCcHHHH-HHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 3456665443 588999999999999999999 999999999999999999876543 4567789999999887
Q ss_pred CCCCCHHHHHHHHHHHH-------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH------------
Q 014268 177 AQPDCGEQALSLVDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------ 234 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~l~-------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------ 234 (427)
....++.+.+.+--.+. . ..-+.+|-+..-..-+| .++++ |++|++..||+++..
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DEaTSA 171 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDEATSA 171 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecCcccc
Confidence 77666665544311110 0 00133444444444453 67777 899999999988743
Q ss_pred ---------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC--cccccce
Q 014268 235 ---------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG--EETIGSQ 303 (427)
Q Consensus 235 ---------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~--~~~~g~~ 303 (427)
|.-|...-+++|.|||++||-++.+.. +|+.......|+.+++..-.-+|.+.....-.. ....+..
T Consensus 172 LDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~--ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~~~~ 249 (339)
T COG1135 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKR--ICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEID 249 (339)
T ss_pred CChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH--HhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhcccc
Confidence 555555556789999999998887654 555555555555555554444444332110000 0000000
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcC
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHK 344 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~ 344 (427)
.-...-++.- .+....+++.|.+.-....-+.+++...+
T Consensus 250 -~~~~~~~~l~-~~~~~~~rl~f~g~~~~~plis~~~~~~~ 288 (339)
T COG1135 250 -LPEELLERLE-SGDGPLLRLTFTGESADQPLLSEVARRFG 288 (339)
T ss_pred -CcHHHHhhhc-cCCceEEEEEecCccccchHHHHHHHHhC
Confidence 0000001110 22235688887666555566666777766
No 71
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.39 E-value=8e-13 Score=130.70 Aligned_cols=140 Identities=21% Similarity=0.342 Sum_probs=107.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
-+++|+++.|.||+||||||+ |.+++++..++++.++++++...+ +...+.+|+++|+.-+++..++.+++.+--++.
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTl-LR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTL-LRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 478999999999999999999 999999999999999999998766 667888999999999999999988865532211
Q ss_pred h-----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------------HHHHHHH
Q 014268 194 R-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 241 (427)
Q Consensus 194 ~-----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------------L~~L~~~ 241 (427)
. ..-+++|-++.+..-.| .++++ |++|++..||+++.. -..|.+.
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKP-HQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhCh-hhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 0 11245666666666553 67787 889999999987643 2234444
Q ss_pred hhcCCcEEEEEecCCcc
Q 014268 242 LSLSQTILIFINQVRAK 258 (427)
Q Consensus 242 l~~~~~tVI~isql~~~ 258 (427)
.++.|+|+|++||.-.+
T Consensus 183 q~~~giT~i~VTHDqeE 199 (352)
T COG3842 183 QRELGITFVYVTHDQEE 199 (352)
T ss_pred HHhcCCeEEEEECCHHH
Confidence 45679999999996553
No 72
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.7e-12 Score=122.58 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=104.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCcc--ccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL--LLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l--~~~~~~~~~~~~~~~~~l 192 (427)
-+++|+++.|.||||+||||| +.++.++.++..+.+++.+.......-..++||+||+. .+.-|.++.++...-+..
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTL-lK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTL-LKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 477999999999999999999 88888888877788888776554433356799999965 444567777765442100
Q ss_pred ----Hhc----------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 193 ----IRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 193 ----~~~----------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
+.. .-+..|-+-.+..- +-.+++| |++|+...||++++. +..|
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l 181 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSG--GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCc--HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH
Confidence 000 00111111111111 1346666 788888888887653 6677
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
.+.+++.|+||++++|.... +..++|.++.|.|.-
T Consensus 182 L~~l~~eg~tIl~vtHDL~~------------------v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 182 LKELRQEGKTVLMVTHDLGL------------------VMAYFDRVICLNRHL 216 (254)
T ss_pred HHHHHHCCCEEEEEeCCcHH------------------hHhhCCEEEEEcCee
Confidence 77777679999999996543 555789999988753
No 73
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.35 E-value=3.1e-12 Score=114.35 Aligned_cols=155 Identities=23% Similarity=0.303 Sum_probs=109.9
Q ss_pred ccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCcc
Q 014268 101 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL 174 (427)
Q Consensus 101 ~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l 174 (427)
+.|-+.|+.+.= -+++|+++-|.||+|+||||| +.++....++..+-++|...+... +.+.+++|+++|+.
T Consensus 12 ~~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTl-lkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~ 88 (223)
T COG2884 12 PGGREALRDVSF--HIPKGEFVFLTGPSGAGKSTL-LKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDF 88 (223)
T ss_pred CCCchhhhCceE--eecCceEEEEECCCCCCHHHH-HHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeec
Confidence 344457776654 588999999999999999999 888888888877778877654332 56788999999998
Q ss_pred ccCCCCCHHHHHHHHHHHHhc----------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH----------
Q 014268 175 LLAQPDCGEQALSLVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------- 234 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~----------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------- 234 (427)
.+....++.+..++.-..+.. .-+++|-+-.-....| .++++ |++|+...||++...
T Consensus 89 rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADEPT 165 (223)
T COG2884 89 RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADEPT 165 (223)
T ss_pred cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecCCC
Confidence 877777766665443221100 0123333333333443 67777 888999998887643
Q ss_pred ----------HHHHHHHhhcCCcEEEEEecCCccccc
Q 014268 235 ----------LRKLSHSLSLSQTILIFINQVRAKLST 261 (427)
Q Consensus 235 ----------L~~L~~~l~~~~~tVI~isql~~~v~~ 261 (427)
+..|..++.+.|+|||+.+|...-+..
T Consensus 166 GNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred CCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 777778888899999999997766554
No 74
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.35 E-value=2.6e-12 Score=125.69 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=107.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.||||+||||| ++++.+..++..+.+.+.++.... ....+++|+.++...++...++.+.+..+..+
T Consensus 27 ~i~~Gei~gllG~NGAGKTTl-lk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTL-LKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 578999999999999999999 889999888888888888876655 46677899999999888888888887765544
Q ss_pred HhcCC----------ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~~~----------~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
..... +..+-++... -.+...+++ |++++...+.+++.. ++.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~--G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l 182 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSG--GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL 182 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCH--HHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence 21110 0111111100 000122333 455555555544422 44444444
Q ss_pred hcCC-cEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 243 SLSQ-TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 243 ~~~~-~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
++.+ +||+++||..+. +++.||.+++|+++..+..+
T Consensus 183 ~~~g~~tvlissH~l~e------------------~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 183 AKEGGVTILLSTHILEE------------------AEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred HhCCCcEEEEeCCcHHH------------------HHHhCCEEEEEeCCEEEEeC
Confidence 4445 899999998875 44568999999998776665
No 75
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.34 E-value=9.4e-12 Score=119.90 Aligned_cols=230 Identities=17% Similarity=0.160 Sum_probs=147.1
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHH
Q 014268 58 GEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL 137 (427)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal 137 (427)
+...|.++.+-+..-+.++|+..|- .. .-++.|++.|+ |..+|+++++.||.|+|||||..
T Consensus 231 ~i~sf~~mRe~ilseL~N~e~v~G~-------------~W----kRFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFls 291 (514)
T KOG2373|consen 231 GIRSFTDMREGILSELLNTERVVGF-------------QW----KRFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLS 291 (514)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhce-------------ee----hhhhHHHHHhc--cCCCCceEEEecCCCCCceeEeh
Confidence 3444666655666666667765552 01 23689999998 99999999999999999999988
Q ss_pred HHHHHhhhcCceEEEEeCCCCCCHH----HHHHhccccC-ccc------------------cCCCCCHHHHHHHHHHHHh
Q 014268 138 HVIAEAQRQGGYCVFIDAEHALDPS----LAETIGVKTE-NLL------------------LAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 138 ~ia~~~~~~~~~vv~is~E~~~~~~----~~~~ig~~~~-~l~------------------~~~~~~~~~~~~~~~~l~~ 194 (427)
..+..+..+|-..+|-|.|++..+. +..-.|+.+. ++. +......+..++.+...+-
T Consensus 292 EYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~y 371 (514)
T KOG2373|consen 292 EYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIY 371 (514)
T ss_pred HhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHH
Confidence 8888888889999999999876643 2222344322 110 0011123334444444344
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeec---
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVT--- 271 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~--- 271 (427)
-.++.-||||.+|.|.....+.. + +-..+..+...+|+++ .+++|-|-++-|-+++-+. ....+
T Consensus 372 V~di~HViIDNLQFmmg~~~~~~---D--rf~~QD~iig~fR~fA---T~nn~HvTlVvHPRKed~d-----~El~t~s~ 438 (514)
T KOG2373|consen 372 VEDIQHVIIDNLQFMMGQGMMAL---D--RFHLQDRIIGYFRQFA---TQNNIHVTLVVHPRKEDGD-----TELDTQSF 438 (514)
T ss_pred HHhhhhhhhhhHHHHhccchhcc---c--hhhhHHHHHHHHHHHh---hccceeEEEEecccccCCC-----ceeeehhh
Confidence 45688899999999985433332 1 2233344555666665 4589999999998886332 11111
Q ss_pred cCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEe
Q 014268 272 CGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEF 326 (427)
Q Consensus 272 ~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~ 326 (427)
.|.....|-||.|+.+.+.. .+...| +..+.|.|||+.. .++.+.+.|
T Consensus 439 fGsAkatQEADNVliiQdkr----l~~~rg-kkyLqi~KNRy~G--dvg~~pLEf 486 (514)
T KOG2373|consen 439 FGSAKATQEADNVLIIQDKR----LDRDRG-KKYLQILKNRYYG--DVGSDPLEF 486 (514)
T ss_pred ccccccccccccEEEEeecc----cccccc-hhhhhhhhhcccC--cccccceee
Confidence 22335778999999998754 223345 4489999999854 334444444
No 76
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.2e-12 Score=123.14 Aligned_cols=140 Identities=18% Similarity=0.295 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC---CCCC-HHHHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE---HALD-PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E---~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
-|+.|++++|.||+||||||| |++++++..++.+.++|.++ +... ....+++|+.+|+...+..+++.+.+.+--
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTl-LRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTL-LRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred eecCCcEEEEECCCCCcHHHH-HHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 477999999999999999999 99999999888889999988 4433 456788999999998888888877766532
Q ss_pred HHH------------hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 191 TLI------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 191 ~l~------------~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
+.. -..-++++-++.+..-+| .++++ |++|+...+|+++.. |+..
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~w 179 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHH
Confidence 111 011145666777777775 67777 888888888887643 4444
Q ss_pred HHHh-hcCCcEEEEEecCCcc
Q 014268 239 SHSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 239 ~~~l-~~~~~tVI~isql~~~ 258 (427)
...+ .+.++|+|++||...+
T Consensus 180 Lr~~~~~~~~ttvfVTHD~ee 200 (345)
T COG1118 180 LRKLHDRLGVTTVFVTHDQEE 200 (345)
T ss_pred HHHHHHhhCceEEEEeCCHHH
Confidence 4443 3469999999997654
No 77
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.32 E-value=4.3e-12 Score=114.44 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=102.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-...|++++|.|+||+||||+ |.+++.+..+..+++++++-+... ....+++|+.+....++...++++.+....++
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~-LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L 102 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTL-LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL 102 (245)
T ss_pred EeccceEEEEEcCCCCCchhH-HHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence 467999999999999999999 899999988999999999877654 35667799888777666666766665443222
Q ss_pred H--------------------------------------------hcCCccEEEEecccccCCCCccCCcccchhHHHHH
Q 014268 193 I--------------------------------------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQA 228 (427)
Q Consensus 193 ~--------------------------------------------~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~a 228 (427)
. --++++++++|....=.. ..+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD--------------i~~ 168 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD--------------IRT 168 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc--------------HHH
Confidence 1 012344555444322110 000
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 229 RLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 229 r~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
++.++.....++..|.+||+.||.+.++ +..||.++.|++++.+..++
T Consensus 169 ---~r~~~dfi~q~k~egr~viFSSH~m~Ev------------------ealCDrvivlh~Gevv~~gs 216 (245)
T COG4555 169 ---RRKFHDFIKQLKNEGRAVIFSSHIMQEV------------------EALCDRVIVLHKGEVVLEGS 216 (245)
T ss_pred ---HHHHHHHHHHhhcCCcEEEEecccHHHH------------------HHhhheEEEEecCcEEEcCC
Confidence 1235556666667799999999988764 44699999999988777654
No 78
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.30 E-value=9.6e-12 Score=115.16 Aligned_cols=160 Identities=22% Similarity=0.287 Sum_probs=109.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|++|+||||| +.++.++.++..+.+++++++... ..+.+++|+.+|.=.++...++.++..+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStl-Lr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTL-LRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eecCCcEEEEECCCCcCHHHH-HHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 478999999999999999999 888888888888899999887544 2456778998886655555555544332
Q ss_pred ------------HHHHHhcCCccEEEEecc-cccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 189 ------------VDTLIRSGSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 189 ------------~~~l~~~~~~~lvvIDsl-~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
++.+. ..++.+|-+... ..++| .+++| |.+.|...||+++-. +
T Consensus 109 plre~~~lp~~~i~~lv-~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 109 PLREHTKLPESLIRELV-LMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred ehHhhccCCHHHHHHHH-HHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 11111 112344444444 34453 67777 667777777777632 4
Q ss_pred HHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 236 RKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 236 ~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
..|.+.+ ...++|+|++||.... +...||.+++|+.+.....++
T Consensus 185 ~~LI~~L~~~lg~T~i~VTHDl~s------------------~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 185 DELIRELNDALGLTVIMVTHDLDS------------------LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHhhCCEEEEEECChHH------------------HHhhhceEEEEeCCEEEEeCC
Confidence 4444444 2369999999997653 444689999998887766653
No 79
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.28 E-value=7.7e-12 Score=123.10 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=104.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+..|++++|.||+||||||| |++++++..+.++-++|+++...+ +...+.+++++|+..+++..++.+++.+--++..
T Consensus 26 i~~Gef~vllGPSGcGKSTl-Lr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTL-LRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 56999999999999999999 999999999899999999987766 5677889999999999999998887765332210
Q ss_pred ----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HH-HHHHHhh
Q 014268 195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSHSLS 243 (427)
Q Consensus 195 ----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~-~L~~~l~ 243 (427)
..-.+++-|+.+..-.| .+++| |++|+...+|++.+. ++ .+++.-+
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 01134555666666554 67777 888888888887654 22 2222234
Q ss_pred cCCcEEEEEecCCc
Q 014268 244 LSQTILIFINQVRA 257 (427)
Q Consensus 244 ~~~~tVI~isql~~ 257 (427)
+.++|+|++||.-.
T Consensus 182 ~l~~T~IYVTHDq~ 195 (338)
T COG3839 182 RLGTTTIYVTHDQV 195 (338)
T ss_pred hcCCcEEEEcCCHH
Confidence 57999999999543
No 80
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5.7e-12 Score=117.77 Aligned_cols=137 Identities=21% Similarity=0.249 Sum_probs=91.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH--
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~-- 193 (427)
+++|+++.|.||+||||||| +++++++.++..+.+.+++..... -...+++.+|+..+.+..++.++..+.-...
T Consensus 26 v~~GEfvsilGpSGcGKSTL-LriiAGL~~p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTL-LRLIAGLEKPTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 56999999999999999999 999999999888888888875422 1234677777666555555544432211110
Q ss_pred --------hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H-HHHHHHhhc
Q 014268 194 --------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L-RKLSHSLSL 244 (427)
Q Consensus 194 --------~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L-~~L~~~l~~ 244 (427)
...-+.+|-+......+| .+++| |++|+...+|+++.. | ..|.+.+++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 001123344444555554 67787 888888888887643 2 233444567
Q ss_pred CCcEEEEEecCCcc
Q 014268 245 SQTILIFINQVRAK 258 (427)
Q Consensus 245 ~~~tVI~isql~~~ 258 (427)
.+.|||++||..++
T Consensus 180 ~~~TvllVTHdi~E 193 (248)
T COG1116 180 TRKTVLLVTHDVDE 193 (248)
T ss_pred hCCEEEEEeCCHHH
Confidence 89999999996654
No 81
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.24 E-value=2.2e-11 Score=120.01 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=100.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.||||+||||| ++++.++.++..+.+++++..... ....+.+|+.+++..++...++.+.+.....+
T Consensus 29 ~i~~Gei~gllGpNGaGKSTL-l~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTT-LRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 477999999999999999999 777788877777888888765433 33456789999887776666776665543221
Q ss_pred HhcC------C----ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~~------~----~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
.... . +..+-+...... +...+++ |++++...++++... +..+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 108 FGLSAAAARALVPPLLEFAKLENKADA-KVGELSG--GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcC-chhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 1000 0 000001110000 0123333 555555555555432 55555555
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
++.|+|||++||.... ++.+||.++.|.++.....+
T Consensus 185 ~~~g~till~sH~l~e------------------~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 185 LARGKTILLTTHFMEE------------------AERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5569999999997764 45568999999877655444
No 82
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.22 E-value=2.4e-11 Score=107.95 Aligned_cols=153 Identities=21% Similarity=0.284 Sum_probs=97.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHH-----
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSL----- 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~----- 188 (427)
-++.|+++.|.||+|+||||| +++++++..+..+.+++.+++... ....+-+.+.+++-.++...++.+.+..
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTL-LnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTL-LNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHH-HHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 478999999999999999999 999999998888889998875332 3333444444443333333444433221
Q ss_pred ----------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------------HHH
Q 014268 189 ----------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRK 237 (427)
Q Consensus 189 ----------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------------L~~ 237 (427)
+... ...+-+.....-.| .++++ |++|+...+|.+.+. +.-
T Consensus 100 LkL~a~~r~~v~~a-----a~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 100 LKLNAEQREKVEAA-----AAQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred cccCHHHHHHHHHH-----HHHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 1111 11122233333332 45666 777777777766543 334
Q ss_pred HHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccc
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
+...+.+.+.|+++++|..+. ....++.++|+.++....
T Consensus 172 v~~l~~E~~~TllmVTH~~~D------------------a~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 172 VSQLCDERKMTLLMVTHHPED------------------AARIADRVVFLDNGRIAA 210 (231)
T ss_pred HHHHHHhhCCEEEEEeCCHHH------------------HHHhhhceEEEeCCEEEe
Confidence 445557789999999996553 445678888988775443
No 83
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.22 E-value=6e-11 Score=116.78 Aligned_cols=160 Identities=14% Similarity=0.198 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+|+.+++..++...++.+.+.....+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTT-IRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 467999999999999999999 788888877777888887764322 23456689998887666666666655432211
Q ss_pred Hhc----------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~----------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
... .-+..+-++....-. ...+++ |++++...++++... +..+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRP-VGTYSG--GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 000 000111111111111 123444 566666666665432 44555555
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
++.|+|||++||.... ++..||.++.|.++.....+
T Consensus 171 ~~~g~tvi~~sH~~~~------------------~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 171 KEEGVTILLTTHYMEE------------------ADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5568999999997653 45568888888876654433
No 84
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2.8e-11 Score=121.56 Aligned_cols=139 Identities=16% Similarity=0.256 Sum_probs=92.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+++..++...++.+.+.......
T Consensus 27 i~~Ge~~~llG~sGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTL-LRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG 105 (356)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC
Confidence 66999999999999999999 888888888888889998875543 233467899999887777777777665432110
Q ss_pred ------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 014268 194 ------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 243 (427)
Q Consensus 194 ------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~ 243 (427)
. ..-++.+-++.+..-. ...+++ |++|+...+|+++.. ++.+.+.+ +
T Consensus 106 ~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 106 MPKAEIEERVAEAARILELEPLLDRK-PRELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0001222233322222 245665 778888888777643 33333333 4
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.++|+|++||....
T Consensus 183 ~~g~tii~vTHd~~e 197 (356)
T PRK11650 183 RLKTTSLYVTHDQVE 197 (356)
T ss_pred hcCCEEEEEeCCHHH
Confidence 469999999997654
No 85
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.21 E-value=4e-11 Score=119.74 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=100.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.++++++.... . .+.+.+|+.+++..+....++.+.+..
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTL-lr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~ 105 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL 105 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence 367999999999999999999 888888888888888998875432 1 234568999988777666666665543
Q ss_pred HHHHHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ~~~l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
...+.. ..-++.+-+....... ...+++ |++|+...+|+++.. +..+
T Consensus 106 ~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-~~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l 182 (343)
T TIGR02314 106 PLELDNTPKDEIKRKVTELLALVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182 (343)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 211100 0001112122221222 245665 788888888887754 3343
Q ss_pred HHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 239 SHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 239 ~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
.+.+ ++.++|||+++|.... +..+||.++.|..+...
T Consensus 183 L~~l~~~~g~tiiliTH~~~~------------------v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 183 LKEINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELI 220 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 3443 4469999999997664 33456666666655443
No 86
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.21 E-value=3.4e-11 Score=120.27 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=100.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
+++|++++|.||||+||||| ++++.++.++..+.+++++..... ....+.+|+.+++..++...++.+.+.....+.
T Consensus 64 i~~Gei~gLlGpNGaGKSTL-l~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTI-ARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 67999999999999999999 788888888878888888875433 334567899988877766666666654322211
Q ss_pred hcC------C----ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHhh
Q 014268 194 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 243 (427)
Q Consensus 194 ~~~------~----~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l~ 243 (427)
... . ...+-++....-. ...+++ |++++...+++++.. +..+.+.++
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS~--G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESKADAR-VSDLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 000 0 0000111110000 123333 556666666655432 555555555
Q ss_pred cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 244 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 244 ~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+.|.|||++||.... ++.+||.++.|+++..+..+
T Consensus 220 ~~g~tilisSH~l~e------------------~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 220 ARGKTILLTTHFMEE------------------AERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 569999999997764 55578999999887655544
No 87
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2e-11 Score=112.84 Aligned_cols=172 Identities=20% Similarity=0.199 Sum_probs=111.0
Q ss_pred cCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccc
Q 014268 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL 175 (427)
Q Consensus 102 TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~ 175 (427)
-|-..|+.+-- -|++|++++|.|++|+||||| ++.+..+..+..+.+++.++.... +.+.+++|+.++.+.
T Consensus 15 ~~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTL-LR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNL--EINQGEMVAIIGPSGAGKSTL-LRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeE--EeCCCcEEEEECCCCCcHHHH-HHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 34444444432 478999999999999999999 777777777777888888865443 456788999988876
Q ss_pred cCCCCCHHHHHHH--------HHHHHhc--CCccEEEEeccc-------ccCCCCccCCcccchhHHHHHHHHHHH----
Q 014268 176 LAQPDCGEQALSL--------VDTLIRS--GSVDVVVVDSVA-------ALVPKGELDGEMGDAHMAMQARLMSQA---- 234 (427)
Q Consensus 176 ~~~~~~~~~~~~~--------~~~l~~~--~~~~lvvIDsl~-------~l~~~~~~~~~~g~~~~~~~ar~ls~~---- 234 (427)
+....++-+..-. ++.++.- ..-+...+|.+. ++.....++| |++||+..||++.+.
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG--GQQQRVaIARaL~Q~pkiI 169 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG--GQQQRVAIARALVQQPKII 169 (258)
T ss_pred cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc--chhHHHHHHHHHhcCCCEE
Confidence 6655544333211 1111100 000011111111 1222356776 888999999988764
Q ss_pred -----------------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 -----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 -----------------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+..|.+..++.|+|||+.-|..+- ...|||.++-|..+...+++
T Consensus 170 LADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl------------------A~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL------------------AKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred ecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH------------------HHHHHhhheEecCCcEEEeC
Confidence 666777777899999999996542 34567878887776665554
No 88
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=5.6e-11 Score=112.26 Aligned_cols=161 Identities=22% Similarity=0.244 Sum_probs=107.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC----CHHHHHHhccccCccc--cCCCC--------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL--LAQPD-------- 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~----~~~~~~~ig~~~~~l~--~~~~~-------- 180 (427)
.+++|+.++|.|+|||||||| +.++.++.++..+.+++++.... ...+.+.+|+++|+.. ++.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTL-LKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 578999999999999999999 77777777777777788887644 2466778899887652 22221
Q ss_pred ------CHHHHHHHHHHH----------------HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHH
Q 014268 181 ------CGEQALSLVDTL----------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (427)
Q Consensus 181 ------~~~~~~~~~~~l----------------~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L 238 (427)
..+++...+... ++.++.+.+.|+++-+|.|..-+-++|.........+.+...+++|
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 222222222211 2345567777777777776655555555444444455666666666
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
... .+.|||+++|.... +..+||.++.|..+..+.+++
T Consensus 185 ~~~---~~~tii~~tHd~~~------------------~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 185 KEE---GGKTIIIVTHDLEL------------------VLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred Hhc---CCCeEEEEeCcHHH------------------HHhhCCEEEEEECCEEeecCC
Confidence 554 57999999997764 445689999998876655543
No 89
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.20 E-value=3.4e-11 Score=129.84 Aligned_cols=84 Identities=43% Similarity=0.791 Sum_probs=81.2
Q ss_pred EeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHHH
Q 014268 308 IVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLRE 386 (427)
Q Consensus 308 i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~~i~~ 386 (427)
|++|+.+||++.+.|+|.|++||++.++++|++...+++.|+|+||+|+++.+ ||++.++.||++||+++++|+.++++
T Consensus 687 i~~~~~~~~~~~~~~~i~~g~gi~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~~~g~e~~~~~l~~~~~~~~~~~~~~~~ 766 (790)
T PRK09519 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKE 766 (790)
T ss_pred hhhhcccccccceEEEEEecCccCchhhHHHHhhhcCceeccCeeeccCCEEecccHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HhccC
Q 014268 387 KLVVD 391 (427)
Q Consensus 387 ~~~~~ 391 (427)
++..+
T Consensus 767 ~~~~~ 771 (790)
T PRK09519 767 KLGIG 771 (790)
T ss_pred HhCCC
Confidence 98754
No 90
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.18 E-value=5e-11 Score=119.64 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=92.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
+++|++++|.|||||||||| +++++++.++..+.++++++.... ....+.+|+.+++..++...++.+++.......
T Consensus 27 i~~Ge~~~l~GpsGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTL-LRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG 105 (353)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC
Confidence 56999999999999999999 888888888888888998876543 234567899999988777777777665422110
Q ss_pred ------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHH-hh
Q 014268 194 ------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS-LS 243 (427)
Q Consensus 194 ------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~-l~ 243 (427)
. ..-++.+-++.+..-. ...+++ |++|+...+|+++.. ++.+.+. .+
T Consensus 106 ~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~LSg--Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 106 MGRAEVAERVAELLDLVGLPGSERKY-PGQLSG--GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0001222223222222 245555 778888888877643 3333333 34
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.++|+|++||....
T Consensus 183 ~~~~tvi~vTHd~~e 197 (353)
T TIGR03265 183 RLGVTTIMVTHDQEE 197 (353)
T ss_pred hcCCEEEEEcCCHHH
Confidence 469999999997654
No 91
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.16 E-value=2e-10 Score=105.78 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHH----
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL---- 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~---- 188 (427)
-+++|++++|.|+||+||||| ++++.++. .+..+.++++++......+.+.+++.+++..+....++.+.+..
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStL-l~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTL-LNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 366999999999999999999 77778877 76677788887754433345567888777655544455544332
Q ss_pred -------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 014268 189 -------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (427)
Q Consensus 189 -------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql 255 (427)
++.+ -.+++++++|....-.. . .-.+.+...++.+ ++.+.|||+++|.
T Consensus 110 ~~LS~G~~qrv~laral--~~~p~illlDEP~~~LD----------~---~~~~~l~~~l~~~----~~~~~tiii~sh~ 170 (194)
T cd03213 110 RGLSGGERKRVSIALEL--VSNPSLLFLDEPTSGLD----------S---SSALQVMSLLRRL----ADTGRTIICSIHQ 170 (194)
T ss_pred ccCCHHHHHHHHHHHHH--HcCCCEEEEeCCCcCCC----------H---HHHHHHHHHHHHH----HhCCCEEEEEecC
Confidence 1222 23678899998765441 0 1112333444443 3348999999996
Q ss_pred CccccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 256 RAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 256 ~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
... .+...+|.++.|+.+
T Consensus 171 ~~~-----------------~~~~~~d~v~~l~~G 188 (194)
T cd03213 171 PSS-----------------EIFELFDKLLLLSQG 188 (194)
T ss_pred chH-----------------HHHHhcCEEEEEeCC
Confidence 531 134467888887654
No 92
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=7.3e-11 Score=118.35 Aligned_cols=140 Identities=16% Similarity=0.272 Sum_probs=92.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
-+++|++++|.|||||||||| ++++.++..+..+.++++++.... ....+.+|+.+++..++...++.+++.......
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~ 106 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTV-LRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML 106 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc
Confidence 366999999999999999999 888888888888889998875443 233467899999887777677766655321100
Q ss_pred -------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-
Q 014268 194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL- 242 (427)
Q Consensus 194 -------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l- 242 (427)
. ..-++++-+..+..-. ...+++ |++|+...+|++... ++.+.+.+
T Consensus 107 ~~~~~~~~~~v~~~l~~~gl~~~~~r~-~~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 107 GVPKEERKQRVKEALELVDLAGFEDRY-VDQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0001222223222222 245665 778888888877643 33333333
Q ss_pred hcCCcEEEEEecCCcc
Q 014268 243 SLSQTILIFINQVRAK 258 (427)
Q Consensus 243 ~~~~~tVI~isql~~~ 258 (427)
++.++|+|++||....
T Consensus 184 ~~~g~tii~vTHd~~e 199 (351)
T PRK11432 184 QQFNITSLYVTHDQSE 199 (351)
T ss_pred HhcCCEEEEEcCCHHH
Confidence 4469999999997664
No 93
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.15 E-value=8.7e-11 Score=118.22 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCc--eEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~--~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
+++|++++|.|||||||||| ++++.++..+.. +.++++++.... ....+.+|+.+++..++...++.+.+......
T Consensus 28 i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~ 106 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTL-LRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRA 106 (362)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHH
Confidence 66999999999999999999 888888888878 889998876543 23456789999988777777777766542211
Q ss_pred H-------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 I-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~-------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
. . ..-++++-++.+..-. ...+++ |++|+...+|+++.. ++.+.+.+
T Consensus 107 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~-~~~LSg--Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 107 QKMPKADIAERVADALKLVGLGDAAAHL-PAQLSG--GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 0 0 0012222233332222 245555 778888888877643 44444444
Q ss_pred -hcC-CcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 243 -SLS-QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 243 -~~~-~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
++. ++|+|++||.... +...||.++.|..+...
T Consensus 184 ~~~~~g~til~vTHd~~e------------------a~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 184 HEELPELTILCVTHDQDD------------------ALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHhCCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 334 8999999997654 23456777777665543
No 94
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.15 E-value=1.1e-10 Score=109.07 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=91.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..++...++.+.+..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 103 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTF-LKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF 103 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence 367999999999999999999 778888877777778888764321 1244568888887665555555554432
Q ss_pred HHHHH-------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 VDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ~~~l~-------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
..... . ..-+..+-+....... ...+++ |++|+...++++... +..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (216)
T TIGR00960 104 PLRIIGVPPRDANERVSAALEKVGLEGKAHAL-PMQLSG--GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL 180 (216)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 11100 0 0000111111111111 134444 666666666665532 4444
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
...+++.+.|||+++|.... +..+||.++.|..+
T Consensus 181 l~~~~~~~~tii~vsH~~~~------------------~~~~~d~i~~l~~G 214 (216)
T TIGR00960 181 FEEFNRRGTTVLVATHDINL------------------VETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 44444458999999996543 44567888887653
No 95
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.15 E-value=7.9e-11 Score=119.02 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=91.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
-+++|++++|.|+|||||||| +++++++.++..+.++++++.... ....+.+|+.+++..++...++.+.+.......
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTV-LRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 366999999999999999999 888888888878888998875433 234567899999887777767766654321100
Q ss_pred -------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-
Q 014268 194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL- 242 (427)
Q Consensus 194 -------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l- 242 (427)
. ..-+.++-++.+.... ...+++ |++|+...+|+++.. ++.+.+.+
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-p~~LSg--Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 115 KTPAAEITPRVMEALRMVQLEEFAQRK-PHQLSG--GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 0 0001222222222222 245555 777788888877643 33333333
Q ss_pred hcCCcEEEEEecCCcc
Q 014268 243 SLSQTILIFINQVRAK 258 (427)
Q Consensus 243 ~~~~~tVI~isql~~~ 258 (427)
++.++|+|++||....
T Consensus 192 ~~~g~tiI~vTHd~~e 207 (375)
T PRK09452 192 RKLGITFVFVTHDQEE 207 (375)
T ss_pred HhcCCEEEEEeCCHHH
Confidence 4469999999997654
No 96
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.15 E-value=1e-10 Score=119.05 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=96.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-+++|++++|.||||+||||| ++++.++.++..+.++++++.... ..+++++++.+++..+....++.+++...+.
T Consensus 25 ~i~~Geiv~liGpNGaGKSTL-Lk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~ 103 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTL-LRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT 103 (402)
T ss_pred EECCCCEEEEECCCCchHHHH-HHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccc
Confidence 367999999999999999999 788888877777888888765433 4566778998887655444555554432110
Q ss_pred H----Hh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHH
Q 014268 192 L----IR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 237 (427)
Q Consensus 192 l----~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~ 237 (427)
. +. ..-+..+-+..+..- +...+++ |++|+...++++.+. +..
T Consensus 104 ~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-~~~~LSg--GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~ 180 (402)
T PRK09536 104 PHRSRFDTWTETDRAAVERAMERTGVAQFADR-PVTSLSG--GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180 (402)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCCchhhcC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 0 00 000011111111111 1234444 666677777766543 445
Q ss_pred HHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+.+.+.+.+.|||+++|.... +..+||.++.|+.+..+..
T Consensus 181 lL~~l~~~g~TIIivsHdl~~------------------~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 181 LVRRLVDDGKTAVAAIHDLDL------------------AARYCDELVLLADGRVRAA 220 (402)
T ss_pred HHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 555554568999999997654 3445677777766654443
No 97
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=3.7e-11 Score=108.05 Aligned_cols=57 Identities=26% Similarity=0.490 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC---CHHHHHHhccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTE 172 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~---~~~~~~~ig~~~~ 172 (427)
-||+|.++.|.||||+||||| +.++..+.+.+.+.+++++.+.. ...+++.+.+--+
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTL-LS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTL-LSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred eecCCceeEEECCCCccHHHH-HHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 588999999999999999999 99999999888999999876543 3677777665433
No 98
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=7.5e-11 Score=119.30 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=92.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
+++|++++|.|||||||||| +++++++..+..+.++++++.... ....+.+|+.+++..++...++.+++.......
T Consensus 42 i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 120 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTL-LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK 120 (377)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 66999999999999999999 888888888888889998875433 334567899999887777777777665422110
Q ss_pred ------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HH-HHHHHhh
Q 014268 194 ------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSHSLS 243 (427)
Q Consensus 194 ------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~-~L~~~l~ 243 (427)
. ..-++.+-+..+..-. ...+++ |++|+...+|+++.. ++ .|.+..+
T Consensus 121 ~~~~~~~~~v~~~l~~l~L~~~~~~~-~~~LSg--Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 121 LPKAEIASRVNEMLGLVHMQEFAKRK-PHQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0001122222222222 245555 778888888877643 32 3333445
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.++|+|++||....
T Consensus 198 ~~g~tii~vTHd~~e 212 (377)
T PRK11607 198 RVGVTCVMVTHDQEE 212 (377)
T ss_pred hcCCEEEEEcCCHHH
Confidence 579999999997654
No 99
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.14 E-value=2.1e-10 Score=115.89 Aligned_cols=136 Identities=18% Similarity=0.308 Sum_probs=95.3
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H--HHHHHhccccCccccCC
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQ 178 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~--~~~~~ig~~~~~l~~~~ 178 (427)
|+..+|.+-- -+.+|++++|.|+||+||||| ++++.++.+++.+-+++++....- + .+..-+|++.|++.+.+
T Consensus 16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTL-m~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTL-MKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceee--eecCCcEEEEeccCCCCHHHH-HHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 6666776654 688999999999999999999 999999999999999999875322 2 34445778888776655
Q ss_pred CCCHHHH-------------------------------------------------HHHHHHHHhcCCccEEEEeccccc
Q 014268 179 PDCGEQA-------------------------------------------------LSLVDTLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 179 ~~~~~~~-------------------------------------------------~~~~~~l~~~~~~~lvvIDsl~~l 209 (427)
..|+.++ .++++.+ ..+.+++|+|..++.
T Consensus 93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL--yr~a~iLILDEPTaV 170 (501)
T COG3845 93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL--YRGARLLILDEPTAV 170 (501)
T ss_pred ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH--hcCCCEEEEcCCccc
Confidence 4443322 1122222 235788888988776
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
... ..+.++...++.|++ .|++||++||-..++-
T Consensus 171 LTP-------------~E~~~lf~~l~~l~~----~G~tIi~ITHKL~Ev~ 204 (501)
T COG3845 171 LTP-------------QEADELFEILRRLAA----EGKTIIFITHKLKEVM 204 (501)
T ss_pred CCH-------------HHHHHHHHHHHHHHH----CCCEEEEEeccHHHHH
Confidence 631 233445555665555 5999999999777644
No 100
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.14 E-value=1.3e-10 Score=114.42 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=95.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.+++++..... ..+.+.+|+.+++..+....++.+.+......
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 104 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTI-ARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY 104 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHH
Confidence 367999999999999999999 788888877777778887754322 23455688888877665555665554322111
Q ss_pred Hh--c--------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IR--S--------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~--~--------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
.. . .-...+-++...... ...+++ |++++...++++... +..+.+.+
T Consensus 105 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 181 (303)
T TIGR01288 105 FGMSTREIEAVIPSLLEFARLESKADVR-VALLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 181 (303)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 00 0 000011111111111 123444 566666666665532 44444444
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
++.|.|||++||.... ++..||.++.|.++.....
T Consensus 182 ~~~g~til~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 182 LARGKTILLTTHFMEE------------------AERLCDRLCVLESGRKIAE 216 (303)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 4469999999997653 4456888888877654433
No 101
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.14 E-value=1.3e-10 Score=116.93 Aligned_cols=140 Identities=22% Similarity=0.275 Sum_probs=92.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHH----HHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~----~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+|||||||| ++++.++..+..+.++|+++.... ..+ .+.+++.+++..++...++.+.+.
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTL-Lr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~ 93 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTT-VRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (363)
T ss_pred EEcCCCEEEEECCCCChHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence 366999999999999999999 888888888888889998876543 122 456899999888777677766654
Q ss_pred HHHHHHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHH
Q 014268 188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 237 (427)
Q Consensus 188 ~~~~l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~ 237 (427)
....+.. ..-+.++-++...... ...+++ |++|+...+|+++.. +..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-p~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~ 170 (363)
T TIGR01186 94 LGPELLGWPEQERKEKALELLKLVGLEEYEHRY-PDELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD 170 (363)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 4322100 0002222233322222 245665 778888888877643 444
Q ss_pred HHHHh-hcCCcEEEEEecCCcc
Q 014268 238 LSHSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 238 L~~~l-~~~~~tVI~isql~~~ 258 (427)
+...+ ++.+.|||+++|....
T Consensus 171 ~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 171 ELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred HHHHHHHhcCCEEEEEeCCHHH
Confidence 43443 3468999999997664
No 102
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.13 E-value=7.7e-11 Score=109.51 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=89.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccC--CCCCHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLA--QPDCGEQALSL- 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~--~~~~~~~~~~~- 188 (427)
+.+|+.++|.|++||||||| .+++.++.++..+.++|++..... +.+.+.+.+++|+.+-. +..++.+++..
T Consensus 30 i~~Ge~lgivGeSGsGKSTL-~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Ep 108 (252)
T COG1124 30 IERGETLGIVGESGSGKSTL-ARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP 108 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHH-HHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhh
Confidence 66999999999999999999 677788888888899999865443 23455566666654311 11122222111
Q ss_pred ------------HHHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHH---------------------H
Q 014268 189 ------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------A 234 (427)
Q Consensus 189 ------------~~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~---------------------~ 234 (427)
+..++. .|-++ ++..-+ ..+++| |++||...+|+++- .
T Consensus 109 l~~~~~~~~~~~i~~~L~-----~VgL~~~~l~R~-P~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 109 LRPHGLSKSQQRIAELLD-----QVGLPPSFLDRR-PHELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred hccCCccHHHHHHHHHHH-----HcCCCHHHHhcC-chhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 111110 01111 111111 233444 44444444444331 2
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+.-|.+.-++++.|.|++||..+ .++|.||.++.|+++...
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~------------------~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLA------------------LVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHH------------------HHHHHhhheeeeeCCeEE
Confidence 44444444568999999999654 478889999999876543
No 103
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.13 E-value=2e-10 Score=106.04 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=102.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
+++|+++.|.|+||+||||| +..+.++.+...+.+.|++++... +....-++++++.-.++...|+++++.....
T Consensus 26 v~~Geiv~llG~NGaGKTTl-Lkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTL-LKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 56999999999999999999 777777777667788888886544 2333446788888888888888887765433
Q ss_pred HHhcCCccEEEEecccccCCC---------CccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 192 LIRSGSVDVVVVDSVAALVPK---------GELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l~~~---------~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
.........-.+|.+-.++|. ..+++ |++|+...+|++... +....+.+
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSG--GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l 182 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCCh--HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence 222111111124555555542 23444 556655555554322 33334444
Q ss_pred h-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 243 S-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 243 ~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+ +.++||+++.|..+. .-..||....|.++....++
T Consensus 183 ~~~~g~tIlLVEQn~~~------------------Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 183 RKEGGMTILLVEQNARF------------------ALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHcCCcEEEEEeccHHH------------------HHHhhCEEEEEeCCEEEEec
Confidence 4 458899999885442 23357888888877665554
No 104
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=2.7e-10 Score=107.96 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=91.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++...++.+.+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTL-LRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 67999999999999999999 777778877777778887754322 12345678888876555555555544322
Q ss_pred HHHHh---c--------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 190 DTLIR---S--------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 190 ~~l~~---~--------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
..... . .-+..+-+.....- ....+++ |++|+...++++... +..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~ 178 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDL-YPAELSG--GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 11000 0 00001111111111 1134444 666666666666532 3343
Q ss_pred HHHhhc-CCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 239 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 239 ~~~l~~-~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.+.+.+ .++|||+++|.... +..+||.++.|..+..
T Consensus 179 l~~~~~~~~~tvi~vsH~~~~------------------~~~~~d~v~~l~~G~i 215 (235)
T cd03261 179 IRSLKKELGLTSIMVTHDLDT------------------AFAIADRIAVLYDGKI 215 (235)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhcCEEEEEECCeE
Confidence 444333 58999999996543 4456888888876543
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.13 E-value=2.5e-10 Score=105.80 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccc-cCCCCCHHHHHHHH-----
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLV----- 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~-~~~~~~~~~~~~~~----- 189 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++......+.+.+++.+++.. .....++.+.+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~ 101 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTL-AKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD 101 (205)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC
Confidence 66999999999999999999 778888877777778887764332334456788777642 11123444433221
Q ss_pred ------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHhh
Q 014268 190 ------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 243 (427)
Q Consensus 190 ------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l~ 243 (427)
..++...+ ++...... ...+++ |++++...++++... +..+.+.++
T Consensus 102 ~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (205)
T cd03226 102 AGNEQAETVLKDLD-----LYALKERH-PLSLSG--GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173 (205)
T ss_pred ccHHHHHHHHHHcC-----CchhcCCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 11111111 11111111 123444 666666666665543 444445544
Q ss_pred cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 244 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 244 ~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+.+.+||+++|.... +...||.++.|+.+
T Consensus 174 ~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G 202 (205)
T cd03226 174 AQGKAVIVITHDYEF------------------LAKVCDRVLLLANG 202 (205)
T ss_pred HCCCEEEEEeCCHHH------------------HHHhCCEEEEEECC
Confidence 458999999996543 44467888887654
No 106
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=3e-10 Score=107.81 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=91.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..++...++.+.+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 101 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTL-LRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence 367999999999999999999 777777776666778887764322 1234568888887665555555554432
Q ss_pred HHH--------HHh------c----CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH----------------
Q 014268 189 VDT--------LIR------S----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 234 (427)
Q Consensus 189 ~~~--------l~~------~----~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------- 234 (427)
... +.. . .-+..+-+...... +...+++ |++++...++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~ 178 (241)
T cd03256 102 GRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSG--GQQQRVAIARALMQQPKLILADEPVASLDPA 178 (241)
T ss_pred hhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 100 000 0 00000101111111 1134444 667777777766532
Q ss_pred ----HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ----LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ----L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+ ++.++|||+++|.... +..+||.++.|..+..
T Consensus 179 ~~~~l~~~l~~~~~~~~~tii~~tH~~~~------------------~~~~~d~v~~l~~G~i 223 (241)
T cd03256 179 SSRQVMDLLKRINREEGITVIVSLHQVDL------------------AREYADRIVGLKDGRI 223 (241)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 33333333 3358999999996553 4456888888876543
No 107
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.13 E-value=1.1e-10 Score=117.25 Aligned_cols=155 Identities=19% Similarity=0.274 Sum_probs=97.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
+.+|++++|.|||||||||| ++++.++.++..+.++|+++.... ....+.+++.+++..++...++.+.+.......
T Consensus 25 i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTL-LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 56999999999999999999 888888887777888898875433 233456888888876666566665554321100
Q ss_pred ----------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHH
Q 014268 194 ----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 240 (427)
Q Consensus 194 ----------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~ 240 (427)
. ..-++.+-++.+..-. ...+++ |++|+...+|++... ++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMVQLAHLADRY-PAQLSG--GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0 0001111122222212 245555 777777777777643 434444
Q ss_pred Hh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 241 SL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 241 ~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.+ ++.++|+|+++|.... +...||.++.|.++..
T Consensus 181 ~l~~~~g~tii~vTHd~~e------------------a~~~~Dri~vl~~G~i 215 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEE------------------AMEVADRVVVMSQGNI 215 (353)
T ss_pred HHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 43 4469999999997654 3345677777766544
No 108
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.12 E-value=1.4e-10 Score=114.04 Aligned_cols=159 Identities=17% Similarity=0.232 Sum_probs=100.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.||||+||||| ++++.++..+..+.+++++..... ..+.+.+|+.+++..++...++.+.+.....+
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTL-l~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTT-MKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 367999999999999999999 788888877778888888765433 23455689998887666656666665433221
Q ss_pred Hhc------CC----ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRS------GS----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~------~~----~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
... .. +..+-++....-. ...+++ |++++...++++... +..+.+.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLSK--GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179 (301)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence 100 00 0111111111111 123443 566666666665432 55555555
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
++ +.|||++||.... ++.+||.++.|+.+.....+
T Consensus 180 ~~-~~tiii~sH~l~~------------------~~~~~d~i~~l~~G~i~~~g 214 (301)
T TIGR03522 180 GK-DKTIILSTHIMQE------------------VEAICDRVIIINKGKIVADK 214 (301)
T ss_pred cC-CCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 54 7999999997764 55578888888877655443
No 109
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.11 E-value=1.8e-10 Score=107.83 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++...++.+.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 100 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTT-LRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLE 100 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHH
Confidence 367999999999999999999 788888877767778887654322 234556888888776655555555443
No 110
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=3e-10 Score=105.80 Aligned_cols=69 Identities=26% Similarity=0.333 Sum_probs=49.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ....+.+++.+++..++...++.+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTL-l~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 90 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTL-LNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQN 90 (211)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHH
Confidence 67999999999999999999 788888877767778887764322 1223557777776655444444443
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.11 E-value=4.5e-10 Score=106.85 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=49.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+|||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..+....++.+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 99 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTL-LRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLEN 99 (243)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHH
Confidence 56999999999999999999 777778877667778887754321 1234567888877655444444443
No 112
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.10 E-value=3.6e-10 Score=104.85 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=99.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL-- 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l-- 192 (427)
-+++|++.++.|+||+||||. .+++.++..+..+-+-+.+. +..+....++||-|+.-.+++..++.+.+..+..+
T Consensus 24 ~v~~G~i~GllG~NGAGKTTt-fRmILglle~~~G~I~~~g~-~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG 101 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTT-FRMILGLLEPTEGEITWNGG-PLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101 (300)
T ss_pred eecCCeEEEeecCCCCCccch-HHHHhccCCccCceEEEcCc-chhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence 467999999999999999999 88889888876555555443 22345566788888776666655554433222111
Q ss_pred -------------H-----------------------------hcCCccEEEEecccc-cCCCCccCCcccchhHHHHHH
Q 014268 193 -------------I-----------------------------RSGSVDVVVVDSVAA-LVPKGELDGEMGDAHMAMQAR 229 (427)
Q Consensus 193 -------------~-----------------------------~~~~~~lvvIDsl~~-l~~~~~~~~~~g~~~~~~~ar 229 (427)
+ --+.+.++|+|..-. +-| ..+
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP--------------VN~- 166 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP--------------VNV- 166 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh--------------hhH-
Confidence 0 125688888886432 221 111
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 230 LMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 230 ~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
+.|+.....+++.|.|||+.||.+..+ +..||.++.|.++..+..|+
T Consensus 167 ---elLk~~I~~lk~~GatIifSsH~Me~v------------------EeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 167 ---ELLKDAIFELKEEGATIIFSSHRMEHV------------------EELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred ---HHHHHHHHHHHhcCCEEEEecchHHHH------------------HHHhhhhheecCCceEEecc
Confidence 346666667777899999999988764 45699999999987666553
No 113
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.10 E-value=2.7e-10 Score=105.81 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTT-MKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 66999999999999999999 778888777777778888765432 23345678887776555444555443
No 114
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=3.6e-10 Score=105.15 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+.+|++++|.|+||+||||| ++++.+..++..+.++++++... ..+.+.+++.+++..+....++.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTT-IRMILGIILPDSGEVLFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCCchh-HHHHccEEEeccCCcCCcCCcHHHHH
Confidence 66999999999999999999 78888877777777888876432 23345577777766555444554443
No 115
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.2e-10 Score=115.81 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|++++|.|+|||||||| ++++.++.++..+.++++++.... ....+.+++.+++..++...++.+.+........
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL-L~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTL-LRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC
Confidence 66999999999999999999 888888887777888888765432 2234568898888776666666665543211000
Q ss_pred ----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 014268 195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 243 (427)
Q Consensus 195 ----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~ 243 (427)
..-++.+-++.+.... ...+++ |++|+...+++++.. +..+.+.+ +
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~~~~~~~-~~~LSg--Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0001111122211111 234555 777777777777643 33333333 3
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.+.|||++||....
T Consensus 182 ~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 182 RLGRTMIYVTHDQVE 196 (369)
T ss_pred HhCCEEEEEeCCHHH
Confidence 469999999997654
No 116
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.09 E-value=5.2e-10 Score=105.93 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHH-HHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~-~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
+++|++++|.|+|||||||| ++++.++.++..+.+++++..... ..+ ...+++.+++..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTL-FNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred ecCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence 66999999999999999999 777778777667778887764322 122 2347787777665555565554432211
Q ss_pred HHh--------------------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 192 LIR--------------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 192 l~~--------------------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
... ..-+..+-++..... +...+++ |++++...++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 178 (236)
T cd03219 102 ARTGSGLLLARARREEREARERAEELLERVGLADLADR-PAGELSY--GQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178 (236)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHcCccchhhC-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 000 000011111111111 1123443 666666666665532
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+.+.+.|||+++|.... +...||.++.|..+..
T Consensus 179 ~~~l~~~l~~~~~~~~tii~vsH~~~~------------------~~~~~d~i~~l~~G~i 221 (236)
T cd03219 179 TEELAELIRELRERGITVLLVEHDMDV------------------VMSLADRVTVLDQGRV 221 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEE
Confidence 444444444468999999996543 4456888888876543
No 117
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.09 E-value=1.3e-09 Score=97.58 Aligned_cols=131 Identities=14% Similarity=0.221 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHH--HHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQ--ALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~--~~~~ 188 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.++ .+..+ -+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~l 93 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTL-MKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEI 93 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHH
Confidence 367999999999999999999 778888877777778888764332 122334666554 33322 2344
Q ss_pred HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCe
Q 014268 189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT 268 (427)
Q Consensus 189 ~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~ 268 (427)
++.+. .+++++++|....-.. . ...+.+...++.+. +.+.|||+++|....
T Consensus 94 aral~--~~p~illlDEP~~~LD-----~--------~~~~~l~~~l~~~~----~~~~tiii~sh~~~~---------- 144 (163)
T cd03216 94 ARALA--RNARLLILDEPTAALT-----P--------AEVERLFKVIRRLR----AQGVAVIFISHRLDE---------- 144 (163)
T ss_pred HHHHh--cCCCEEEEECCCcCCC-----H--------HHHHHHHHHHHHHH----HCCCEEEEEeCCHHH----------
Confidence 44443 4689999998766441 0 12234444555443 348999999996543
Q ss_pred eeccCCceeeeecceEEEEEec
Q 014268 269 EVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 269 ~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+...||.++.+..+
T Consensus 145 --------~~~~~d~~~~l~~g 158 (163)
T cd03216 145 --------VFEIADRVTVLRDG 158 (163)
T ss_pred --------HHHhCCEEEEEECC
Confidence 44457888777654
No 118
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=4.2e-10 Score=104.95 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=49.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ....+.+++.+++..+....++.+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTL-LRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 366999999999999999999 777778777777778887764322 12334577777765544444444433
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.08 E-value=5.6e-10 Score=104.03 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=50.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..++...++.+.+
T Consensus 24 i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l 99 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTL-LKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV 99 (214)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHH
Confidence 66999999999999999999 777778777777778887764322 12345678888876655544554443
No 120
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.08 E-value=6.2e-10 Score=100.51 Aligned_cols=135 Identities=23% Similarity=0.268 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH-------
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA------- 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~------- 185 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..++.. ++.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~lLS~G~~ 102 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTL-ARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQR 102 (173)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHCcCHHHH
Confidence 56999999999999999999 777777777767778887764322 2345668888887655542 44432
Q ss_pred --HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccc
Q 014268 186 --LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 263 (427)
Q Consensus 186 --~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~ 263 (427)
+.+++.+. .+++++++|....-... ...+.+...++.+. +.+++||+++|....
T Consensus 103 qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~~----~~~~tii~~sh~~~~----- 158 (173)
T cd03246 103 QRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAALK----AAGATRIVIAHRPET----- 158 (173)
T ss_pred HHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHHH----hCCCEEEEEeCCHHH-----
Confidence 22333333 46899999987765420 11233444454443 348999999996542
Q ss_pred cCCCeeeccCCceeeeecceEEEEEec
Q 014268 264 FGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 264 ~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
++ .||.++.|..+
T Consensus 159 -------------~~-~~d~v~~l~~G 171 (173)
T cd03246 159 -------------LA-SADRILVLEDG 171 (173)
T ss_pred -------------HH-hCCEEEEEECC
Confidence 33 47888777643
No 121
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=2.9e-10 Score=113.82 Aligned_cols=140 Identities=18% Similarity=0.259 Sum_probs=83.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.+++++..... . .+.+.+++.+++..++...++.+.+..
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTL-lk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~ 105 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTL-IRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL 105 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHH
Confidence 367999999999999999999 788888877777888888764332 1 234568888887766555566555443
Q ss_pred HHHHHh-------c---CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ~~~l~~-------~---~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
...+.. . .-+..+-++...... ...+++ |++|+...++++... +..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~ 182 (343)
T PRK11153 106 PLELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182 (343)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 211100 0 000111111111111 134444 666666666666543 3344
Q ss_pred HHHh-hcCCcEEEEEecCCcc
Q 014268 239 SHSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 239 ~~~l-~~~~~tVI~isql~~~ 258 (427)
.+.+ ++.++|||+++|....
T Consensus 183 L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 183 LKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHH
Confidence 4443 3458999999997664
No 122
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=1.7e-09 Score=97.72 Aligned_cols=137 Identities=16% Similarity=0.234 Sum_probs=90.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH-------
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL------- 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~------- 186 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTL-IKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 56999999999999999999 777777776667778887754322 23445678888876655544554432
Q ss_pred ---HHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccc
Q 014268 187 ---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 263 (427)
Q Consensus 187 ---~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~ 263 (427)
.+++.+. .+++++++|....-.. . .....+.+.++.+.+ .+.+||+++|....
T Consensus 102 qrv~laral~--~~p~illlDEPt~~LD----------~---~~~~~l~~~l~~~~~----~g~tiii~th~~~~----- 157 (173)
T cd03230 102 QRLALAQALL--HDPELLILDEPTSGLD----------P---ESRREFWELLRELKK----EGKTILLSSHILEE----- 157 (173)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCccCCC----------H---HHHHHHHHHHHHHHH----CCCEEEEECCCHHH-----
Confidence 2233332 4689999998777652 0 112334444554432 38999999996542
Q ss_pred cCCCeeeccCCceeeeecceEEEEEec
Q 014268 264 FGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 264 ~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+..+||.++.++.+
T Consensus 158 -------------~~~~~d~i~~l~~g 171 (173)
T cd03230 158 -------------AERLCDRVAILNNG 171 (173)
T ss_pred -------------HHHhCCEEEEEeCC
Confidence 44567887777643
No 123
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.08 E-value=6.5e-10 Score=104.71 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh---cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~---~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-+++|++++|+|+||+||||| ++++.+..+ +..+.++++++......+.+.+++.+++..++...++.+.+.....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-lk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 107 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTL-LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAI 107 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHH
Confidence 467999999999999999999 677777766 5567778877654333445567888877666555566555543211
Q ss_pred HHh-cC-------------CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHH
Q 014268 192 LIR-SG-------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 237 (427)
Q Consensus 192 l~~-~~-------------~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~ 237 (427)
... .. .+..+-++.+..- ....+++ |++++...++++... +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~ 184 (226)
T cd03234 108 LRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-LVKGISG--GERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184 (226)
T ss_pred hhcccccchHHHHHHHHHHHHHhhcchhhhcc-cccCcCH--HHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 100 00 0111111111110 1123443 666677777766542 444
Q ss_pred HHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+...+.+.+.|||+++|.... .+..+||.++.|..+.
T Consensus 185 ~l~~~~~~~~tiii~sh~~~~-----------------~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 185 TLSQLARRNRIVILTIHQPRS-----------------DLFRLFDRILLLSSGE 221 (226)
T ss_pred HHHHHHHCCCEEEEEecCCCH-----------------HHHHhCCEEEEEeCCE
Confidence 555554558999999996521 2455688888887543
No 124
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.08 E-value=6.2e-10 Score=105.11 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HH-HHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS-LAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~-~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... .. ....+++.+++..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTT-FYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE 101 (232)
T ss_pred ecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHH
Confidence 66999999999999999999 788888877777778888764322 12 22357888777655554455544432111
Q ss_pred HHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHH
Q 014268 192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 241 (427)
Q Consensus 192 l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~ 241 (427)
... ..-+..+-++...... ...+++ |++++...++++... +..+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 102 IRGLSKKEREEKLEELLEEFHITHLRKSK-ASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 000 0000011111111111 123333 556666666555432 4444444
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+.+.+.|||+++|.... +...||.++.|..+.
T Consensus 179 ~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~ 210 (232)
T cd03218 179 LKDRGIGVLITDHNVRE------------------TLSITDRAYIIYEGK 210 (232)
T ss_pred HHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCe
Confidence 44468999999996543 455688888887654
No 125
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=4.6e-10 Score=105.21 Aligned_cols=71 Identities=17% Similarity=0.335 Sum_probs=51.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+.+|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTT-IKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENL 94 (220)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHH
Confidence 366999999999999999999 778888877767778887754322 23445678888776555444554443
No 126
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.07 E-value=5.6e-10 Score=104.11 Aligned_cols=71 Identities=28% Similarity=0.332 Sum_probs=50.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++...++.+.+
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTL-LKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV 100 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHH
Confidence 467999999999999999999 677778776667778887764322 12345678887776555444554443
No 127
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.07 E-value=6.7e-10 Score=103.35 Aligned_cols=148 Identities=19% Similarity=0.217 Sum_probs=87.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccc-cCCCCCHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLV- 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~-~~~~~~~~~~~~~~- 189 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++.. .....++.+.+...
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~ 101 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTL-LRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL 101 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHH
Confidence 367999999999999999999 777788777767778887754322 234566888887652 12233444433221
Q ss_pred --------------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 190 --------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 190 --------------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
..++...+ ++...... ...+++ |++++...++++... +
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 102 ENLGLPEEEIEERVEEALELVG-----LEGLRDRS-PFTLSG--GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHcCCCHHHHHHHHHHHHHHcC-----cHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11111111 11111111 134444 666666666665532 4
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEe
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
..+...+++.+++||++||.... +..+||.++.|..
T Consensus 174 ~~~l~~~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~ 209 (211)
T cd03225 174 LELLKKLKAEGKTIIIVTHDLDL------------------LLELADRVIVLED 209 (211)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 44444444458999999996553 4445788877754
No 128
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=6.3e-10 Score=105.78 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=90.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HH-HHHHhccccCccccCCCCCHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS-LAETIGVKTENLLLAQPDCGEQALSLVD- 190 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~-~~~~ig~~~~~l~~~~~~~~~~~~~~~~- 190 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... .. ..+.+++.+++..+....++.+.+....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTT-FYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 56999999999999999999 788888877777778888765432 12 2345788887765554445444332211
Q ss_pred ---------------HHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 191 ---------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 191 ---------------~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
.++...+ ++..... +...+++ |++++...++++... +
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~-~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFH-----IEHLRDS-MGQSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcC-----CHHHhhc-chhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1111111 1111111 1123443 566666666655422 4
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
..+...+++.+.|||+++|.... +...||.++.|.++..
T Consensus 177 ~~~l~~~~~~g~tiii~sH~~~~------------------~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 177 KRIIEHLRDSGLGVLITDHNVRE------------------TLAVCERAYIVSQGHL 215 (241)
T ss_pred HHHHHHHHhcCCEEEEEEcCHHH------------------HHHhcCEEEEEeCCeE
Confidence 44445555568999999996543 4456888888876543
No 129
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=3.7e-10 Score=102.50 Aligned_cols=137 Identities=22% Similarity=0.334 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHHH----
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQAL---- 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~~---- 186 (427)
+++|++++|.|+||+||||| ++++.+..++..+.+++++..... ..+.+.+++.+++..+....++.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTL-LRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 56999999999999999999 677777766666777777653321 23455678877776555444444432
Q ss_pred --------HHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 187 --------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 187 --------~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
.+++.+. .+++++++|....-.. . .....+.+.++.+.+ +.+.++|+++|....
T Consensus 102 S~G~~qr~~la~al~--~~p~llilDEP~~~LD----------~---~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~ 163 (178)
T cd03229 102 SGGQQQRVALARALA--MDPDVLLLDEPTSALD----------P---ITRREVRALLKSLQA---QLGITVVLVTHDLDE 163 (178)
T ss_pred CHHHHHHHHHHHHHH--CCCCEEEEeCCcccCC----------H---HHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 2233332 4689999998776541 0 111233344444432 247999999996543
Q ss_pred ccccccCCCeeeccCCceeeeecceEEEEEe
Q 014268 259 LSTFGFGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 259 v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
+...+|.++.|..
T Consensus 164 ------------------~~~~~d~i~~l~~ 176 (178)
T cd03229 164 ------------------AARLADRVVVLRD 176 (178)
T ss_pred ------------------HHHhcCEEEEEeC
Confidence 3445777777754
No 130
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=6.9e-10 Score=104.93 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... . .+.+.+++.+++..++...++.+.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENV 103 (233)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHH
Confidence 66999999999999999999 777778877777778887764322 1 2245678888876655545555443
No 131
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.07 E-value=7.6e-10 Score=106.34 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=93.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----------------HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------------PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----------------~~~~~~ig~~~~~l~~~~ 178 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..+..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 105 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 105 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence 467999999999999999999 777778777767778888764321 233456888888766655
Q ss_pred CCCHHHHHHHHH-HHHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-------------
Q 014268 179 PDCGEQALSLVD-TLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------- 234 (427)
Q Consensus 179 ~~~~~~~~~~~~-~l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------- 234 (427)
..++.+.+.... .+.. ..-+..+-++....-.+...+++ |++++...++++...
T Consensus 106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~L 183 (257)
T PRK10619 106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG--GQQQRVSIARALAMEPEVLLFDEPTSAL 183 (257)
T ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 555555443211 0000 00011111111100011234444 666666666666543
Q ss_pred -------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 -------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+++.+++||+++|.... +..+||.++.|.++..
T Consensus 184 D~~~~~~l~~~l~~l~~~g~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGKI 230 (257)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEE
Confidence 445555555569999999996543 4456788888876543
No 132
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=2.1e-10 Score=106.70 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=56.4
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhcc--ccCccccCC
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGV--KTENLLLAQ 178 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~--~~~~l~~~~ 178 (427)
|+..+|...= -+++|+++.|.||||+||||| .+++.++.++..+.++|.++.... +....+.|+ .+|+..++.
T Consensus 16 Gl~Al~~Vsl--~v~~Gei~~LIGPNGAGKTTl-fNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 16 GLTAVNDVSL--EVRPGEIVGLIGPNGAGKTTL-FNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CEEEEeceeE--EEcCCeEEEEECCCCCCceee-eeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 4455555543 578999999999999999999 999999999999999999886443 233334454 355555555
Q ss_pred CCCHHH
Q 014268 179 PDCGEQ 184 (427)
Q Consensus 179 ~~~~~~ 184 (427)
..++.+
T Consensus 93 ~lTVlE 98 (250)
T COG0411 93 GLTVLE 98 (250)
T ss_pred CCcHHH
Confidence 444433
No 133
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.06 E-value=5.6e-10 Score=104.44 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=51.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---H-HHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---S-LAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~-~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... . . +.+.+++.+++..++...++.+.+.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 104 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHH-HHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence 467999999999999999999 777778877777778887764322 1 1 2345788887766555555555443
No 134
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.06 E-value=7.8e-10 Score=103.00 Aligned_cols=71 Identities=28% Similarity=0.359 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..+....++.+.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 97 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTL-LRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENI 97 (213)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHH
Confidence 366999999999999999999 777788877667778887754321 23455688888776555444444433
No 135
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=5.8e-10 Score=112.08 Aligned_cols=134 Identities=19% Similarity=0.296 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+++|++++|.|+|||||||| ++++.++.++..+.++++++.... ....+.+++.+++..++...++.+.+..
T Consensus 21 i~~Ge~~~l~G~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSL-INAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRY 99 (352)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence 67999999999999999999 778888877777778887764321 2334568888888766665666655432
Q ss_pred H---------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHH
Q 014268 189 V---------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 239 (427)
Q Consensus 189 ~---------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~ 239 (427)
. ..++. .+-++.+.... ...+++ |++|+...++++... +..+.
T Consensus 100 ~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L 171 (352)
T PRK11144 100 GMAKSMVAQFDKIVA-----LLGIEPLLDRY-PGSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL 171 (352)
T ss_pred hhhhhhHHHHHHHHH-----HcCCchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1 11111 11122221111 234554 667777777766543 33333
Q ss_pred HHh-hcCCcEEEEEecCCcc
Q 014268 240 HSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 240 ~~l-~~~~~tVI~isql~~~ 258 (427)
+.+ ++.++|||+++|....
T Consensus 172 ~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 172 ERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHHHhcCCeEEEEecCHHH
Confidence 333 3458999999997654
No 136
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=8.5e-10 Score=101.35 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT- 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~- 191 (427)
-+++|++++|.|+||+||||| ++++.+.. .+..+.++++++... ..+.+.+++.++...+....++.+.+.....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTL-LDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 366999999999999999999 66666653 245667788776543 3344567887776555554555555432111
Q ss_pred --H------------HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 192 --L------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 192 --l------------~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
+ .--.+++++++|....-.. . .....+.+.++.+. +.++|||+++|..+
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD----------~---~~~~~l~~~l~~~~----~~~~tiiivtH~~~ 169 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD----------S---QAAYNIVRFLKKLA----DSGQAILCTIHQPS 169 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC----------H---HHHHHHHHHHHHHH----HcCCEEEEEEcCCh
Confidence 0 0123578888888766541 0 11123334444443 34899999999654
No 137
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.05 E-value=8.1e-10 Score=100.58 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=89.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCcc---ccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l---~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++. .+....++.+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTEL-AEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 467999999999999999999 788888877777778888764332 12344678887763 2333345554433
Q ss_pred H--------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEe
Q 014268 188 L--------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (427)
Q Consensus 188 ~--------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~is 253 (427)
. ++.+ -.+++++++|....-.. . ...+.+.+.++.+. +.+.|||+++
T Consensus 101 ~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD---------~----~~~~~l~~~l~~~~----~~~~tiii~s 161 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVD---------V----GAKAEIYRLIRELA----DAGKAVLLIS 161 (182)
T ss_pred HHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCC---------H----HHHHHHHHHHHHHH----HCCCEEEEEe
Confidence 2 1222 24689999998766542 0 11233444455443 2489999999
Q ss_pred cCCccccccccCCCeeeccCCceeeeecceEEEEEe
Q 014268 254 QVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 254 ql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
|.... +..+||.++.|..
T Consensus 162 h~~~~------------------~~~~~d~v~~l~~ 179 (182)
T cd03215 162 SELDE------------------LLGLCDRILVMYE 179 (182)
T ss_pred CCHHH------------------HHHhCCEEEEecC
Confidence 96543 4445777777754
No 138
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=4.5e-10 Score=109.78 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=95.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCcc--ccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l--~~~~~~~~~~~ 185 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+...+++.+++. .++ +.++.+.
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~ 106 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTL-MQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKD 106 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHH
Confidence 366999999999999999999 788888888878888998875321 23345678888764 233 3455554
Q ss_pred HHHHHHHH-------h---cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 186 LSLVDTLI-------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 186 ~~~~~~l~-------~---~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+....... . ..-+..+-++ .+... +...+++ |++++...+++++..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSg--Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~ 183 (287)
T PRK13641 107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-SPFELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183 (287)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhC-CcccCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 43211100 0 0001111111 11111 1234454 667777777766543
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+...+++.|.|||+++|..+. +...||.++.|+++...
T Consensus 184 l~~~l~~l~~~g~tvlivsH~~~~------------------~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 184 MMQLFKDYQKAGHTVILVTHNMDD------------------VAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 445555555568999999996553 45568999999876543
No 139
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.05 E-value=3.9e-10 Score=105.72 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HH-HHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS-LAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~-~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... .. ..+.+++.+++..+....++.+.+....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTL-LKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 467999999999999999999 778888877777778887754322 11 2345788877765555445544433211
Q ss_pred HHHh----c----CCccEE-EEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHH
Q 014268 191 TLIR----S----GSVDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 241 (427)
Q Consensus 191 ~l~~----~----~~~~lv-vIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~ 241 (427)
.... . .-...+ .++..... ....+++ |++++...++++... +..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 101 YARRRAKRKARLERVYELFPRLKERRKQ-LAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred hhcCchhHHHHHHHHHHHHHhhhhhhhC-chhhCCH--HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 1000 0 000000 01110000 1123343 556666666655432 4444444
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+.+.++|||+++|.... +..+||.++.|+.+.
T Consensus 178 ~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~ 209 (222)
T cd03224 178 LRDEGVTILLVEQNARF------------------ALEIADRAYVLERGR 209 (222)
T ss_pred HHHCCCEEEEEeCCHHH------------------HHHhccEEEEeeCCe
Confidence 44468999999996543 445678888887544
No 140
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.05 E-value=1.2e-09 Score=104.29 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-----------HHHHHHhccccCccccCCCCCHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----------PSLAETIGVKTENLLLAQPDCGE 183 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-----------~~~~~~ig~~~~~l~~~~~~~~~ 183 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..+....++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTL-LRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVL 103 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHH
Confidence 467999999999999999999 677777776666777777654221 12345678888876555545555
Q ss_pred HHHHHHHHHHhc-----------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH------------------
Q 014268 184 QALSLVDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 234 (427)
Q Consensus 184 ~~~~~~~~l~~~-----------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------ 234 (427)
+.+......... .-+..+-++..... ....+++ |++++...++++...
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~--Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 180 (250)
T PRK11264 104 ENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS-YPRRLSG--GQQQRVAIARALAMRPEVILFDEPTSALDPELV 180 (250)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC-ChhhCCh--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 444321100000 00000011111111 1133444 666666666666532
Q ss_pred --HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 --L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+...+.+.+.+||+++|.... +..+||.++.|.++.
T Consensus 181 ~~l~~~l~~~~~~~~tvi~~tH~~~~------------------~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 181 GEVLNTIRQLAQEKRTMVIVTHEMSF------------------ARDVADRAIFMDQGR 221 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCE
Confidence 444444444458999999996543 445688888887654
No 141
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.04 E-value=1e-09 Score=104.34 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
-+++|++++|.|+||+||||| +.++.+..++..+.+++++..... ..+.+.+++.+++..+....++.+.+...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTL-LRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence 366999999999999999999 777777777777778888764332 23345678888776555444554443321
Q ss_pred HHHHh-----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 190 DTLIR-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 190 ~~l~~-----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
..... ..-+..+-++...... ...+++ |++++...++++... +..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 178 (240)
T PRK09493 102 PLRVRGASKEEAEKQARELLAKVGLAERAHHY-PSELSG--GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178 (240)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 10000 0000111111111111 123333 556666666655432 4444
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
...+++.+.+||+++|.... +...||.++.|.++..
T Consensus 179 l~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 179 MQDLAEEGMTMVIVTHEIGF------------------AEKVASRLIFIDKGRI 214 (240)
T ss_pred HHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 44444568999999996553 3445788888876543
No 142
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.04 E-value=5.1e-10 Score=104.47 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+.+|++++|.|+||+||||| ++++.+..++..+.+++++..... ..+.+.+++.+++..++...++.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTL-LNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred EeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 66999999999999999999 677777777777778887764322 1234567888777655554454443
No 143
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=9.4e-10 Score=106.78 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=89.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc--ccCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL--LLAQPDCGEQALSLVD 190 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l--~~~~~~~~~~~~~~~~ 190 (427)
|++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+...+++.+++. .+. ..++.+.+....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~ 105 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTL-LLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGP 105 (274)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhc-cCcHHHHHHhhH
Confidence 66999999999999999999 777788877777888888765432 33456688888764 222 234433332211
Q ss_pred HHH--------h--cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHH
Q 014268 191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 240 (427)
Q Consensus 191 ~l~--------~--~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~ 240 (427)
... . ..-+..+-+.....-. ...+++ |++++...+++++.. +..+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (274)
T PRK13647 106 VNMGLDKDEVERRVEEALKAVRMWDFRDKP-PYHLSY--GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 000 0 0000011111111111 123443 555566666655432 444444
Q ss_pred HhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 241 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 241 ~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
.+++.|+|||+++|.... +..+||.++.|+.+..+
T Consensus 183 ~~~~~g~tili~tH~~~~------------------~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 183 RLHNQGKTVIVATHDVDL------------------AAEWADQVIVLKEGRVL 217 (274)
T ss_pred HHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 444458999999996553 44568999998776543
No 144
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.04 E-value=1e-09 Score=102.75 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 96 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTT-LKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHL 96 (220)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHH
Confidence 67999999999999999999 888888877777778887764322 23455678888776555444554443
No 145
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=3.1e-09 Score=95.72 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH-------
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA------- 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~------- 185 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..+.. .++.+.
T Consensus 25 i~~G~~~~l~G~nGsGKstL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~ 102 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTL-LKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQR 102 (171)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHHH
Confidence 67999999999999999999 788888877767778888764322 234456788777765543 344332
Q ss_pred --HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 186 --LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 186 --~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
+.+++.+. .+++++++|....-.. . .....+.+.++.+ .+ +.+||+++|...
T Consensus 103 ~rl~la~al~--~~p~llllDEP~~gLD-----~--------~~~~~l~~~l~~~----~~-~~tii~~sh~~~ 156 (171)
T cd03228 103 QRIAIARALL--RDPPILILDEATSALD-----P--------ETEALILEALRAL----AK-GKTVIVIAHRLS 156 (171)
T ss_pred HHHHHHHHHh--cCCCEEEEECCCcCCC-----H--------HHHHHHHHHHHHh----cC-CCEEEEEecCHH
Confidence 22333332 4689999998776542 0 1112233333333 32 699999999654
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.03 E-value=1.3e-09 Score=104.74 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 96 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTL-LRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV 96 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHH
Confidence 366999999999999999999 777788777666778887764322 23344578877775444344444443
No 147
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=7.1e-10 Score=105.33 Aligned_cols=71 Identities=30% Similarity=0.463 Sum_probs=48.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ....+.+++.+++..+....++.+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTL-LRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 366999999999999999999 777777776666777887654321 11234577777766555444554443
No 148
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.03 E-value=8e-10 Score=98.15 Aligned_cols=150 Identities=19% Similarity=0.287 Sum_probs=97.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC------------C----HHHHHHhccccCccccCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQP 179 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~------------~----~~~~~~ig~~~~~l~~~~~ 179 (427)
-..|+++.|.|.+||||||| |.++.-+-.+..+.+.+.+|... + +.+..++|++++++.+...
T Consensus 29 A~~GdVisIIGsSGSGKSTf-LRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsH 107 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTF-LRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSH 107 (256)
T ss_pred cCCCCEEEEecCCCCchhHH-HHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHH
Confidence 45899999999999999999 88888887788888888877421 1 2355678999988765544
Q ss_pred CCHH----------------HHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------
Q 014268 180 DCGE----------------QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------- 234 (427)
Q Consensus 180 ~~~~----------------~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------- 234 (427)
.++- +..+....++ .-|-|+.-..-+| ..+++ |++|+...+|+++..
T Consensus 108 mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L-----~kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 108 MTVLENVIEAPVHVLGVSKAEAIERAEKYL-----AKVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred HHHHHHHHhcchHhhcCCHHHHHHHHHHHH-----HHhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecCC
Confidence 4322 2222333332 2222333333332 45555 677777777776532
Q ss_pred ---------------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 ---------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 ---------------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
++.|+. .|.|+++++|-+. |+ .+.++.++||+++..-.++
T Consensus 180 TSALDPElVgEVLkv~~~LAe----EgrTMv~VTHEM~------FA------------R~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 180 TSALDPELVGEVLKVMQDLAE----EGRTMVVVTHEMG------FA------------RDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHH----hCCeEEEEeeehh------HH------------HhhhhheEEeecceecccC
Confidence 444444 4999999999654 32 3457889999987644444
No 149
>PRK10908 cell division protein FtsE; Provisional
Probab=99.03 E-value=1.3e-09 Score=102.40 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... . .+.+.+++.+++..+....++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTL-LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDN 99 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHH
Confidence 367999999999999999999 777777777777778887764322 1 234567888777654444444443
No 150
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.03 E-value=8.8e-10 Score=110.86 Aligned_cols=139 Identities=19% Similarity=0.277 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ....+.+++.+++..++...++.+.+..
T Consensus 20 i~~Gei~~l~G~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTL-IRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 67999999999999999999 788888877777778887764321 1234568888887766655666655543
Q ss_pred HHHHHh--------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHH
Q 014268 189 VDTLIR--------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 240 (427)
Q Consensus 189 ~~~l~~--------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~ 240 (427)
...... ..-+..+-++.+.... ...+++ |++|+...++++... +..+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--GqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELLGIGHLLGRL-PGRLSG--GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLE 175 (354)
T ss_pred HhhccChhHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 211000 0001111112211111 234554 677777777776542 334444
Q ss_pred Hh-hcCCcEEEEEecCCcc
Q 014268 241 SL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 241 ~l-~~~~~tVI~isql~~~ 258 (427)
.+ ++.++|||+++|....
T Consensus 176 ~l~~~~g~tiiivtH~~~~ 194 (354)
T TIGR02142 176 RLHAEFGIPILYVSHSLQE 194 (354)
T ss_pred HHHHhcCCEEEEEecCHHH
Confidence 43 3458999999997654
No 151
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.1e-09 Score=104.11 Aligned_cols=155 Identities=23% Similarity=0.261 Sum_probs=91.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-|++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+...+++.+++..++...++.+.+.....
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTT-MKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK 101 (242)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence 367999999999999999999 778888877777778888764332 2334567888887655554555554433211
Q ss_pred HHhc----------CCccEEEEec--ccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHH
Q 014268 192 LIRS----------GSVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 239 (427)
Q Consensus 192 l~~~----------~~~~lvvIDs--l~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~ 239 (427)
+... .-+..+-+.. +..- ....+++ |++++...++++... +..+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 102 LLKWPKEKIRERADELLALVGLDPAEFADR-YPHELSG--GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcHHHHhc-ChhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1000 0001111110 1010 1123443 666666666666543 33333
Q ss_pred HHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 240 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 240 ~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
..++ +.+++||+++|.... +...||.++.|.++.
T Consensus 179 ~~~~~~~g~tvii~sH~~~~------------------~~~~~d~i~~l~~G~ 213 (242)
T cd03295 179 KRLQQELGKTIVFVTHDIDE------------------AFRLADRIAIMKNGE 213 (242)
T ss_pred HHHHHHcCCEEEEEecCHHH------------------HHHhCCEEEEEECCE
Confidence 3433 358999999996542 445678888887654
No 152
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=4.9e-10 Score=105.07 Aligned_cols=69 Identities=25% Similarity=0.277 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.++++++.... ..+.+++.+++..++...++.+.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l 94 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTL-LRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNV 94 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHH
Confidence 366999999999999999999 777778776667777887654321 234567777665544444554443
No 153
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=6.5e-10 Score=113.13 Aligned_cols=163 Identities=16% Similarity=0.150 Sum_probs=99.8
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H-H----HHHHhccccCccc
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLL 175 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~-~----~~~~ig~~~~~l~ 175 (427)
++.+++. -+++|++++|.|+|||||||| ++++.++..+..+.++++++.... . . +.+.+++.+++..
T Consensus 43 ~L~~isl-----~i~~Gei~~LvG~NGsGKSTL-Lr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 43 GVKDASL-----AIEEGEIFVIMGLSGSGKSTM-VRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred EEEeEEE-----EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 4555554 356999999999999999999 888888887777888888765432 1 1 1246899988877
Q ss_pred cCCCCCHHHHHHHHHHHH--------h--cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----------
Q 014268 176 LAQPDCGEQALSLVDTLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------- 234 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~--------~--~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------- 234 (427)
++...++.+.+.....+. . ..-+..+-++....-. ...+++ |++|+...++++...
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-~~~LSg--Gq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-PDELSG--GMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 666666666554321110 0 0001111122211111 234555 777777777776643
Q ss_pred ---------HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ---------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ---------L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+...+ ++.++|||+++|.... +..+||.++.|..+..
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~------------------~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE------------------AMRIGDRIAIMQNGEV 243 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH------------------HHHhCCEEEEEECCEE
Confidence 44444443 3468999999997654 3334677777766543
No 154
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.3e-09 Score=106.61 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=94.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-----HHHHHHhccccCcc--ccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENL--LLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l--~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+...+|+.+++. .++ +.++.+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~ 106 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTL-IQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIA 106 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc-cccHHHHHH
Confidence 367999999999999999999 777778877777888888865432 24456789988865 222 234444332
Q ss_pred HH---------------HHHHhcCCccEEEEe--cccccCCCCccCCcccchhHHHHHHHHHHH----------------
Q 014268 188 LV---------------DTLIRSGSVDVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 234 (427)
Q Consensus 188 ~~---------------~~l~~~~~~~lvvID--sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------- 234 (427)
.. ..++...+ ++ .+... +...+++ |++++...+++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g-----L~~~~~~~~-~~~~LSg--Gq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 107 FGPINLGLSEEEIENRVKRAMNIVG-----LDYEDYKDK-SPFELSG--GQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred hHHHHCCCCHHHHHHHHHHHHHHcC-----CCchhhccC-CcccCCH--HHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 21 11111111 11 11111 1234454 677777777776643
Q ss_pred ----HHHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 ----LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 ----L~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+. +.+.|||+++|..+. +..+||.++.|+.+...
T Consensus 179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~------------------~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMED------------------VAKLADRIIVMNKGKCE 224 (287)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 445555543 358999999997653 34468999998776543
No 155
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.3e-10 Score=109.74 Aligned_cols=140 Identities=20% Similarity=0.275 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+|.-.++.|+|++|+||||| ++++.++.+++.+.+-++++-..+ +...+++||++|+-.++...++..++..
T Consensus 21 ~p~~GvTAlFG~SGsGKTsl-in~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y 99 (352)
T COG4148 21 LPARGITALFGPSGSGKTSL-INMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY 99 (352)
T ss_pred CCCCceEEEecCCCCChhhH-HHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence 44447999999999999999 999999998877666655443222 4567889999998776666554433322
Q ss_pred HHHHHhc----CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------------HHHHHHHhh
Q 014268 189 VDTLIRS----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHSLS 243 (427)
Q Consensus 189 ~~~l~~~----~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------------L~~L~~~l~ 243 (427)
....... .-++++-|..+..-+| ..++| |++|++...|++... +-.|-+...
T Consensus 100 G~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~ 176 (352)
T COG4148 100 GMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176 (352)
T ss_pred hhcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence 1111000 0022233333333332 33444 555555555554322 333333334
Q ss_pred cCCcEEEEEecCCccc
Q 014268 244 LSQTILIFINQVRAKL 259 (427)
Q Consensus 244 ~~~~tVI~isql~~~v 259 (427)
+.++||+++||-..++
T Consensus 177 e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 177 EINIPILYVSHSLDEV 192 (352)
T ss_pred hcCCCEEEEecCHHHH
Confidence 5799999999977653
No 156
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=6.7e-10 Score=109.43 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=91.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--------------------------C-HHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--------------------------D-PSLAETI 167 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--------------------------~-~~~~~~i 167 (427)
=+.+|++++|.|+||+||||| ++++.++.++..+.++++++... . ..+.+.+
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTF-IEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhce
Confidence 366999999999999999999 78888887777777888654210 1 2345678
Q ss_pred ccccCcc--ccCCCCCHHHHHHHHHHHH--------h--cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH
Q 014268 168 GVKTENL--LLAQPDCGEQALSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA 234 (427)
Q Consensus 168 g~~~~~l--~~~~~~~~~~~~~~~~~l~--------~--~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~ 234 (427)
|+.+++. .++. .++.+.+....... . ..-...+-++ .+..- +...+++ |++++...+++++..
T Consensus 108 g~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSg--GqkqrvalA~aL~~~ 183 (305)
T PRK13651 108 GVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR-SPFELSG--GQKRRVALAGILAME 183 (305)
T ss_pred EEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-ChhhCCH--HHHHHHHHHHHHHhC
Confidence 9988863 2332 34444332211000 0 0001111111 11111 1234444 666666666666543
Q ss_pred --------------------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 --------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 --------------------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+++.|+|||+++|.... +..+||.++.|..+...
T Consensus 184 P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~------------------~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN------------------VLEWTKRTIFFKDGKII 244 (305)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH------------------HHHhCCEEEEEECCEEE
Confidence 444445555569999999996653 44568999998765533
No 157
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.02 E-value=7.4e-10 Score=104.19 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=50.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCcc--ccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL--LLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l--~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++. .+....++.+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTL-ARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence 367999999999999999999 788888877767778888764432 13345688888775 333344554443
No 158
>PRK04296 thymidine kinase; Provisional
Probab=99.02 E-value=2.1e-09 Score=98.64 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC--CC-CCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhc
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EH-ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~--E~-~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~ 195 (427)
|.+++++|++|+||||++++++..+...+..|+++.. +. .....++.++|+......+ ....+++..+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence 7899999999999999999999999888888888843 22 1123455666765444222 234555555444 45
Q ss_pred CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCc
Q 014268 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGN 275 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~ 275 (427)
++.++|+||.++.+.. ..+..|.+.++..|++||++.....-.+. .|..+ .
T Consensus 77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~~~~~~-~f~~~-------~ 127 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDTDFRGE-PFEGS-------P 127 (190)
T ss_pred CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCcccccC-cCchH-------H
Confidence 6789999999987641 01233445555679999999776553221 11111 1
Q ss_pred eeeeecceEEEEEe
Q 014268 276 ALKFYASVRLNIKR 289 (427)
Q Consensus 276 ~ie~~ad~vi~L~r 289 (427)
.+...||.+..|..
T Consensus 128 ~L~~~aD~V~~l~~ 141 (190)
T PRK04296 128 YLLALADKVTELKA 141 (190)
T ss_pred HHHHhcCeEEEeeE
Confidence 46678999988865
No 159
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.02 E-value=1.2e-09 Score=104.99 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=47.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++... ..+.+.+++.+++..++...++.+.+
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl 102 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTL-LRLLAGLETPSAGELLAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNV 102 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEH--HHhhCceEEEecCccCCCCCcHHHHH
Confidence 366999999999999999999 7788787766666667765422 12344577777765554434544443
No 160
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.02 E-value=7.8e-10 Score=104.13 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhh-----hcCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~-----~~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++. .+..+.++++++.... ..+.+.+++.+++..++ ..++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e 99 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTL-LRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD 99 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHH
Confidence 366999999999999999999 77777776 6666778887764321 22345678888876555 455555
Q ss_pred HHHHHHHHH--------h---cCCccEEEEecccccCC-CCccCCcccchhHHHHHHHHHHH------------------
Q 014268 185 ALSLVDTLI--------R---SGSVDVVVVDSVAALVP-KGELDGEMGDAHMAMQARLMSQA------------------ 234 (427)
Q Consensus 185 ~~~~~~~l~--------~---~~~~~lvvIDsl~~l~~-~~~~~~~~g~~~~~~~ar~ls~~------------------ 234 (427)
.+....... . ..-++.+-++......+ ...+++ |++++...++++...
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 177 (227)
T cd03260 100 NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSG--GQQQRLCLARALANEPEVLLLDEPTSALDPIST 177 (227)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 443211100 0 00011111111111110 134554 677777777776543
Q ss_pred --HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 --L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+++. .+||+++|.... +...||.++.|.++.
T Consensus 178 ~~l~~~l~~~~~~-~tii~~sH~~~~------------------~~~~~d~i~~l~~G~ 217 (227)
T cd03260 178 AKIEELIAELKKE-YTIVIVTHNMQQ------------------AARVADRTAFLLNGR 217 (227)
T ss_pred HHHHHHHHHHhhC-cEEEEEeccHHH------------------HHHhCCEEEEEeCCE
Confidence 44444444444 899999996543 445678888887654
No 161
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.4e-09 Score=104.93 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+++|++++|+|+||+||||| ++++.+...+..+.++++++.... ..+...+++.+++..+....++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 101 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTL-LRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQEL 101 (265)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHH
Confidence 366999999999999999999 778888877767778887764321 2344567888777654444444433
No 162
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.02 E-value=9.1e-10 Score=102.61 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ....+.+++.+++..+....++.+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTT-LRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 367999999999999999999 777777776666777887654322 11224577777765544444544443
No 163
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=5.9e-10 Score=105.69 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=89.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H--HHHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~--~~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
-+.+|++++|+|+||+||||| ++++.++.++..+.+++++..... . .+.+.+++.+++..++...++.+.+....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTL-LGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence 467999999999999999999 778788877766777887765332 1 23445788777655544444444332211
Q ss_pred HHH-----hc---CCccEE-EEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHH
Q 014268 191 TLI-----RS---GSVDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 241 (427)
Q Consensus 191 ~l~-----~~---~~~~lv-vIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~ 241 (427)
... .. .-...+ -++.... .+...+++ |++++...++++... +..+.+.
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~--G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 106 FFAERDQFQERIKWVYELFPRLHERRI-QRAGTMSG--GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCH--HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 000 00 000000 0110000 01123333 555566666655432 4444444
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+.+.+.|||+++|.... +..+||.++.|.++...
T Consensus 183 ~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 183 LREQGMTIFLVEQNANQ------------------ALKLADRGYVLENGHVV 216 (237)
T ss_pred HHHCCCEEEEEeCcHHH------------------HHhhCCEEEEEeCCEEE
Confidence 44568999999996543 44568888888765443
No 164
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.01 E-value=9.4e-10 Score=105.83 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..+....++.+.+.....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 102 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTL-LRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRA 102 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhc
Confidence 366999999999999999999 788888877666778887754322 2334567887776554333454443322100
Q ss_pred HH-------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH------H--------------------H
Q 014268 192 LI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ------A--------------------L 235 (427)
Q Consensus 192 l~-------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~------~--------------------L 235 (427)
.. . ..-+..+-++...... ...+++ |++++...+++++. . +
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Ge~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l 179 (258)
T PRK13548 103 PHGLSRAEDDALVAAALAQVDLAHLAGRD-YPQLSG--GEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179 (258)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHH
Confidence 00 0 0001111111111111 123443 66666666666662 1 3
Q ss_pred HHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 236 RKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 236 ~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
..+.+.+. +.+.|||++||.... +...||.++.|.++..
T Consensus 180 ~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 180 LRLARQLAHERGLAVIVVLHDLNL------------------AARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHH------------------HHHhcCEEEEEECCEE
Confidence 34444443 568999999996553 3446788888876543
No 165
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=1.2e-09 Score=103.22 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=46.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGE 183 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~ 183 (427)
-+.+|++++|.|+||+||||| ++++.+...+..+.++++++.... ....+.+++.+++..++...++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 89 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTL-LNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVA 89 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHH
Confidence 367999999999999999999 777777777666778888764332 11234567776665444333333
No 166
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=1.8e-09 Score=107.43 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=92.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccc--cCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~--~~~~~~~~~~~~ 187 (427)
|++|++++|.|+|||||||| ++++.++..+..+.++++++.... ..+.+.+++.+++.. +....++.+.+.
T Consensus 38 i~~Ge~~~IvG~sGsGKSTL-l~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTL-ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred ECCCCEEEEECCCCCcHHHH-HHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 56999999999999999999 666667766666778888765432 123446788887752 222233333321
Q ss_pred ----------------HHHHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH----------------
Q 014268 188 ----------------LVDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 234 (427)
Q Consensus 188 ----------------~~~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------- 234 (427)
.+..++..-+ ++ ...... ..++++ |++|+...+++++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~g-----L~~~~~~~~-p~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVG-----LRPEHYDRY-PHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCC-----CChHHhcCC-CccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 1112222111 11 111222 245665 777777777776643
Q ss_pred ----HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 235 ----LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 235 ----L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+..+...+ ++.++|||++||.... +...||.++.|+.+.....
T Consensus 189 ~~~~i~~lL~~l~~~~g~til~iTHdl~~------------------~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 189 VQAQVLNLMMDLQQELGLSYVFISHDLSV------------------VEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 33333333 4469999999996653 4456888888887665443
No 167
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=3.8e-09 Score=96.32 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=97.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-+++|++..|.||||+|||||...+...+...++.+.|+ +..... ..+++..++.+++-.+.-|.++.++..+-+.
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~-g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~ 101 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN-GVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeC-CcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc
Confidence 377999999999999999999555555555444455544 333222 4678888888887766656555555433211
Q ss_pred HHhcCC------------ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-------------------------
Q 014268 192 LIRSGS------------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------------- 234 (427)
Q Consensus 192 l~~~~~------------~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------------- 234 (427)
-...+. ....-+..+..-. ...++| |++|+...+|.+++.
T Consensus 102 p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-y~~LSG--GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~ 178 (259)
T COG4559 102 PHRSGREPEEDERIAAQALAATDLSGLAGRD-YRTLSG--GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178 (259)
T ss_pred ccccCCCchhhHHHHHHHHHHcChhhhhccc-hhhcCc--hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHH
Confidence 000000 0000011111111 123444 677777777777664
Q ss_pred -HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 235 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 235 -L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
..++++.+.+.|+.|+++-|... .-.+|||.++.|+++.....+.
T Consensus 179 ~tl~laR~la~~g~~V~~VLHDLN------------------LAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 179 HTLRLARQLAREGGAVLAVLHDLN------------------LAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HHHHHHHHHHhcCCcEEEEEccch------------------HHHHhhheeeeeeCCeEeecCC
Confidence 44555555556899999988543 3567899999999887666553
No 168
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.01 E-value=1.2e-09 Score=105.83 Aligned_cols=154 Identities=20% Similarity=0.208 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H----HHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~----~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... . .+.+.+++.+++..++...++.+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTL-LRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence 67999999999999999999 778888877767778887754321 1 1344578888876655555555544321
Q ss_pred HHHHhc-----------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 190 DTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 190 ~~l~~~-----------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
...... .-+..+-++...... ...+++ |++++...++++... +..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 109 LREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSG--GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred HHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 110000 000111111111111 134444 666666666665532 3333
Q ss_pred HHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 239 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 239 ~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
.+.+. +.+.|||+++|.... +...||.++.|..+.
T Consensus 186 l~~~~~~~g~tiiivsH~~~~------------------~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 186 ISELNSALGVTCVVVSHDVPE------------------VLSIADHAYIVADKK 221 (269)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhhCEEEEEECCE
Confidence 34433 348999999996543 445578888876544
No 169
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.00 E-value=2.1e-09 Score=100.69 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H-H---H-HHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---L-AETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~-~---~-~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.++++++.... . . + .+.+++.+++..++...++.+.+
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 104 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTL-LHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV 104 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHH
Confidence 467999999999999999999 777777777777778887754322 1 1 1 24588888876655555555544
No 170
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=2e-09 Score=99.70 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh---cCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~---~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+||+||||| ++++.+..+ +..+.+++++..... ..+.+.+++.+++..+....++.+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 105 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTL-LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLD 105 (202)
T ss_pred EECCCcEEEEECCCCCCHHHH-HHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHh
Confidence 366999999999999999999 778888766 556778887764332 234455778777655554455555443
No 171
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.00 E-value=1.9e-09 Score=95.15 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=93.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHH--
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQAL-- 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~-- 186 (427)
+.+|+-+.|+|++||||||| +.+.+++-.+.++.+++.+..... ..+.+.+|+++|.+.+....+..++.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTL-l~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTL-LAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred ecCCceEEEEcCCCCcHHhH-HHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 56999999999999999999 888888877777778877664332 24567789999988777655544332
Q ss_pred -------------HHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-------------------
Q 014268 187 -------------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 234 (427)
Q Consensus 187 -------------~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------- 234 (427)
...+.++..-++.- -...+ ..++++ |++|++..+|+++..
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~-----Rl~Hy-P~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGK-----RLTHY-PAQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCccc-----ccccC-ccccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 22223322212111 11122 245555 677777777765432
Q ss_pred --HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 --L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
..-|....++.|.|.|+++|.. .+..-|+.++.+..+.
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~-------------------~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDP-------------------QLAARCDRQLRLRSGR 223 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCH-------------------HHHHhhhheeeeecce
Confidence 2222333356899999999943 3555577777776543
No 172
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.1e-09 Score=107.16 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=93.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC----C---HHHHHHhccccCcc--ccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D---PSLAETIGVKTENL--LLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~----~---~~~~~~ig~~~~~l--~~~~~~~~~~~ 185 (427)
=|++|++++|.|+||+||||| ++++.++..+..+.+++++.... . ..+.+.+|+.+++. .++. .++.+.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~ 105 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTL-LQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKD 105 (288)
T ss_pred EEcCCCEEEEECCCCChHHHH-HHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHH
Confidence 366999999999999999999 77777887777788889886532 1 23456788888864 3333 244444
Q ss_pred HHHHHHHH-------h---cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 186 LSLVDTLI-------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 186 ~~~~~~l~-------~---~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+....... . ..-++.+-++ .+.. .+...+++ |++++...+++++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSg--GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~ 182 (288)
T PRK13643 106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-KSPFELSG--GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIE 182 (288)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-CCcccCCH--HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHH
Confidence 33211100 0 0001111111 1111 11234444 667777777766543
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+++.+.|||+++|.... +..+||.++.|..+...
T Consensus 183 l~~~l~~l~~~g~til~vtHd~~~------------------~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 183 MMQLFESIHQSGQTVVLVTHLMDD------------------VADYADYVYLLEKGHII 223 (288)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEE
Confidence 444444444468999999996543 34468999898766543
No 173
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=9.9e-10 Score=105.41 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHH-H
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-T 191 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~-~ 191 (427)
+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..+....++.+.+.... .
T Consensus 25 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~ 103 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTL-LKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP 103 (255)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence 56999999999999999999 777777776666777777653221 233455788777655544444444433210 0
Q ss_pred ---HHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 192 ---LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 192 ---l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
+.. ..-+..+-++...... ...+++ |++++...++++... +..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 180 (255)
T PRK11231 104 WLSLWGRLSAEDNARVNQAMEQTRINHLADRR-LTDLSG--GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180 (255)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 000 0000111111111111 133444 666666666665542 4444
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
.+.+.+.++|||+++|.... +..++|.++.|.++.
T Consensus 181 l~~l~~~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 181 MRELNTQGKTVVTVLHDLNQ------------------ASRYCDHLVVLANGH 215 (255)
T ss_pred HHHHHHCCCEEEEEECCHHH------------------HHHhcCEEEEEECCe
Confidence 44444458999999996553 344577777776554
No 174
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=1.5e-09 Score=105.11 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=91.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HH----HHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS----LAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~----~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... .. ..+.+++.++...++...++.+.+.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 124 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTL-LRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA 124 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence 366999999999999999999 778888877777778888764332 11 1245788888766555556555543
Q ss_pred HHHHHH-------hc---CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHH
Q 014268 188 LVDTLI-------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 237 (427)
Q Consensus 188 ~~~~l~-------~~---~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~ 237 (427)
...... .. .-+..+-++...... ...+++ |++++...++++... +..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~ 201 (269)
T cd03294 125 FGLEVQGVPRAEREERAAEALELVGLEGWEHKY-PDELSG--GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQD 201 (269)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 321100 00 000011111111111 133444 666666666666532 444
Q ss_pred HHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 238 LSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 238 L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+...+ ++.+.+||+++|.... +...||.++.|.++.
T Consensus 202 ~l~~~~~~~g~tiii~tH~~~~------------------~~~~~d~v~~l~~G~ 238 (269)
T cd03294 202 ELLRLQAELQKTIVFITHDLDE------------------ALRLGDRIAIMKDGR 238 (269)
T ss_pred HHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCE
Confidence 44443 3358999999996543 445688888887654
No 175
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.99 E-value=2e-09 Score=101.76 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++...... ...++.+++..++...++.+.+
T Consensus 8 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTL-LNLISGLAQPTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHH
Confidence 56999999999999999999 77777777766777788765432211 1135666655444444444443
No 176
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.1e-09 Score=105.64 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..+....++.+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTL-LKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVREL 105 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHH
Confidence 366999999999999999999 777777777666778887754321 2334567777776444333344433
No 177
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2e-09 Score=104.83 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-|++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTL-l~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTL-AKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 367999999999999999999 677778877777788888865432 24456688888765
No 178
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.99 E-value=1.6e-09 Score=103.03 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H-HHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P-SLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~-~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+.+|++++|.|+||+||||| ++++.+..++..+.+++++..... . .....+++.+++..++...++.+.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 98 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTM-MDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENL 98 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHH
Confidence 366999999999999999999 777777777777778888764322 1 1223477777776555544555443
No 179
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=3.5e-09 Score=98.91 Aligned_cols=70 Identities=20% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+.+|++++|.|+||+||||| ++++.+..++..+.++++++........+.+++.+++..+....++.+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTL-LRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHH
Confidence 467999999999999999999 7777777776677777877644332233456776665544433344433
No 180
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2e-09 Score=102.46 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=51.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC-----C----HHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----D----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~-----~----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.++++++... . ..+.+.+++.+++..++...++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence 366999999999999999999 77778887776777888876431 1 1234567888877665554455444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 103 i 103 (242)
T PRK11124 103 L 103 (242)
T ss_pred H
Confidence 3
No 181
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.99 E-value=3.3e-09 Score=100.56 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-|.+|++++|.|+||+||||| ++++.++.++..+.++++++.... ....+.+++.+++..+....++.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 95 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTL-FSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL 95 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence 367999999999999999999 777777777777778887754322 22234677877765443334444433
No 182
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2.3e-09 Score=104.77 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=92.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCcc--ccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l--~~~~~~~~~~~ 185 (427)
-|++|++++|.|+|||||||| ++++.++..+..+.+++++..... ..+.+.+|+.+++. .++. .++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~ 106 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTL-IQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVERE 106 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHH
Confidence 467999999999999999999 777777777777888888765321 23556789988864 2222 244433
Q ss_pred HHHH---------------HHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 186 LSLV---------------DTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 186 ~~~~---------------~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
+... ..++.. +-++ .+.. .+...+++ |++++...+++++..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~-----~gL~~~~~~-~~~~~LSg--Gq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 107 IIFGPKNFKMNLDEVKNYAHRLLMD-----LGFSRDVMS-QSPFQMSG--GQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHH-----cCCChhhhh-CCcccCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 3221 111111 1111 0111 11234444 666666666666543
Q ss_pred -----HHHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccc
Q 014268 235 -----LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 235 -----L~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
+..+.+.++ +.|+|||+++|.... +..+||.++.|..+..+.
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~------------------~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNE------------------VARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 444444443 358999999996553 344688888887665443
No 183
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.9e-09 Score=103.27 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=48.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHH-HHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLA-ETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~-~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+.+|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+. ..+++.+++..++...++.+.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 101 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTV-FNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENL 101 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHH
Confidence 356999999999999999999 778888877777778887764332 1121 2355566765555444555443
No 184
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.5e-09 Score=105.61 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTT-VRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNP 90 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcCh
Confidence 467999999999999999999 777788877777888888865432 24456788888875
No 185
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.3e-09 Score=103.18 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=89.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
+.+|++++|+|+||+||||| ++++.+..++..+.++++++.... ....+.+++.+++..++...++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~ 101 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTL-LRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK 101 (232)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 56999999999999999999 777777777767778887764432 122356788777765554445544433211100
Q ss_pred ------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHhhc
Q 014268 194 ------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 244 (427)
Q Consensus 194 ------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l~~ 244 (427)
. ..-...+-++...... ...+++ |++++...++++... +..+...+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 102 LPKAEIKERVAEALDLVQLEGYANRK-PSQLSG--GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0001111112111111 123333 555555555555432 4444444433
Q ss_pred -CCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 245 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 245 -~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.++|||+++|.... +..+||.++.|.++..
T Consensus 179 ~~~~tiii~sh~~~~------------------~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 179 ELGITFVFVTHDQEE------------------ALTMSDRIAVMNKGKI 209 (232)
T ss_pred HcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEE
Confidence 58999999996543 4456888888876543
No 186
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.2e-09 Score=112.25 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=50.7
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--CHHHHHHhcc--ccCccccCC
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGV--KTENLLLAQ 178 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~~~~~~~ig~--~~~~l~~~~ 178 (427)
..||.+-= -+.+|++++|.|.||+||||| ++++.++..++.+.++++++... .+.-+...|+ ..|++.+.+
T Consensus 22 ~AL~~v~l--~v~~GEV~aL~GeNGAGKSTL-mKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 22 KALDGVSL--TVRPGEVHALLGENGAGKSTL-MKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred eeecccee--EEeCceEEEEecCCCCCHHHH-HHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 44444322 467999999999999999999 88889988888899999987543 2444555443 445444333
No 187
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.98 E-value=2.2e-09 Score=102.79 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=49.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----------------HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------------PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----------------~~~~~~ig~~~~~l~~~~ 178 (427)
-|++|++++|.|+||+||||| ++++.++..+..+.++++++.... ..+.+.+++.+++..+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTI-LRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP 100 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence 367999999999999999999 777778777767777887754321 123456778777665554
Q ss_pred CCCHHHHH
Q 014268 179 PDCGEQAL 186 (427)
Q Consensus 179 ~~~~~~~~ 186 (427)
..++.+.+
T Consensus 101 ~~tv~~nl 108 (252)
T TIGR03005 101 HKTVLDNV 108 (252)
T ss_pred CCcHHHHH
Confidence 44544443
No 188
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.98 E-value=2.7e-09 Score=110.38 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=97.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC---CCC--HHHHHHhccccCccccC--CCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALD--PSLAETIGVKTENLLLA--QPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~---~~~--~~~~~~ig~~~~~l~~~--~~~~~~~~~~~ 188 (427)
+.+|++++|+|++||||||| ..++.++..+.++.++|++.. ... ....+++-+.+++.+.. ...++.+++..
T Consensus 314 l~~GE~lglVGeSGsGKSTl-ar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 314 LREGETLGLVGESGSGKSTL-ARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 67999999999999999999 566666666667777776654 111 22334455555554322 22333333221
Q ss_pred ----------------HHHHHhcCCccEEEEec-ccccCCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 189 ----------------VDTLIRSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 189 ----------------~~~l~~~~~~~lvvIDs-l~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+..++ ++|-+.. +...+ ..+++| |++|+...||+++..
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll-----~~VgL~~~~l~ry-P~elSG--GQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELL-----ELVGLPPEFLDRY-PHELSG--GQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred HHhhhcccchHHHHHHHHHHH-----HHcCCCHHHHhcC-chhcCc--chhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 11111 2222222 22333 367777 888888888887643
Q ss_pred ----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 ----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+..|++.-+++|+|.|+|||.... +++.||.+..|+++..+..+
T Consensus 465 qa~VlnLl~~lq~e~g~t~lfISHDl~v------------------V~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 465 QAQVLNLLKDLQEELGLTYLFISHDLAV------------------VRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeCCHHH------------------HHhhCceEEEEECCeEEEeC
Confidence 444444445679999999997653 66779999999988766655
No 189
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.98 E-value=1.7e-09 Score=100.75 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL 175 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~ 175 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++... .+.+.+++.+++..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~ 78 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTL-LKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRRS 78 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCccHH--HHHhheEEeccccc
Confidence 367999999999999999999 77788877776777788765322 23455777776644
No 190
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.98 E-value=1.7e-09 Score=102.77 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCC--H-HHH-HHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD--P-SLA-ETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~--~-~~~-~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++|++++|.|+||+||||| ++++.+.. .+..+.+++++..... . ... ..+++.+++..+....++.+.+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTL-SKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 66999999999999999999 77777763 4566778888764332 1 222 2367777776655555555544332
Q ss_pred HHHHhc-----------------CCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 190 DTLIRS-----------------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 190 ~~l~~~-----------------~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
...... .-+..+-++ .+....+...+++ |++++...++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 179 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSG--GEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 111000 000001111 1111111112444 677777777766532
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeee-cceEEEEEeccc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGL 292 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~-ad~vi~L~r~~~ 292 (427)
+..+.+.+++.+.|||+++|.... +... ||.++.|.++..
T Consensus 180 ~~~l~~~l~~~~~~~~tvi~vsH~~~~------------------~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 180 LKIVAEGINRLREPDRSFLIITHYQRL------------------LNYIKPDYVHVLLDGRI 223 (243)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEecHHH------------------HHhhcCCeEEEEeCCEE
Confidence 445555555568999999996543 3444 688888876543
No 191
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=2e-09 Score=100.20 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=88.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++| +++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..++...++.+.+.....+
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTL-MRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL 99 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHH
Confidence 36689 999999999999999 777788777667778887764332 23456678888776655544555444321110
Q ss_pred Hh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
.. ..-...+-++...... ...+++ |++++...++++... +..+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 100 KGIPSKEVKARVDEVLELVNLGDRAKKK-IGSLSG--GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred hCCCHHHHHHHHHHHHHHCCCHHHHhCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00 0000111111111111 133444 666666666665432 44444444
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
++ +.|||+++|.... +...||.++.|..+
T Consensus 177 ~~-~~tii~vsH~~~~------------------~~~~~d~i~~l~~g 205 (211)
T cd03264 177 GE-DRIVILSTHIVED------------------VESLCNQVAVLNKG 205 (211)
T ss_pred hC-CCEEEEEcCCHHH------------------HHHhCCEEEEEECC
Confidence 44 5899999996543 44567888887654
No 192
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.98 E-value=1.2e-09 Score=108.71 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=93.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCcc--ccCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENL--LLAQPDCGEQALS 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l--~~~~~~~~~~~~~ 187 (427)
|.+|++++|.|+|||||||| ++++.++..+..+.++|+++.... . .+.+.+++.+++. .+....++.+.+.
T Consensus 44 i~~Ge~~~lvG~sGsGKSTL-lk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTF-ARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHH
Confidence 66999999999999999999 666667766667778888875433 1 2345688888875 2333345544432
Q ss_pred HHHHHH----h--------cCCccEEEE-ecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 188 LVDTLI----R--------SGSVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 188 ~~~~l~----~--------~~~~~lvvI-Dsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
...... . ..-+..+-+ +.+.... ..++++ |++|+...+++++..
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~ 199 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSG--GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQ 199 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 210000 0 000111111 1111222 245665 777777777776643
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
+..+.+.+ ++.+.|||++||.... +..+||.++.|+.+....
T Consensus 200 i~~lL~~l~~~~~~til~iTHdl~~------------------~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAV------------------VKHISDRVLVMYLGHAVE 242 (331)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 33444444 3469999999997653 444578888887765443
No 193
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.8e-09 Score=103.65 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=45.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++.
T Consensus 27 i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTL-FRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNP 87 (277)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence 66999999999999999999 777778877777888888764432 34556678887764
No 194
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.98 E-value=1e-09 Score=103.15 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=45.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+.+|++++|.|+||+||||| ++++.+..++..+.+++++....... .+.+++.+++..+....++.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTL-LKMITGILRPTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHH
Confidence 66999999999999999999 77777777666677777765322111 2356666665544433344433
No 195
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.98 E-value=2.2e-09 Score=113.16 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H-HH-HHHhccccCccccCCCCCHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSL-- 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~-~~-~~~ig~~~~~l~~~~~~~~~~~~~~-- 188 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... . .+ ...+++.+++..+....++.+.+..
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTL-MKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence 367999999999999999999 788888877777778887754322 1 12 2347788877655554555544321
Q ss_pred ---------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHH
Q 014268 189 ---------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 239 (427)
Q Consensus 189 ---------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~ 239 (427)
+..++...++ +...... ...+++ |++++...++++... +..+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~l-----~~~~~~~-~~~LSg--G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 112 PKRQASMQKMKQLLAALGC-----QLDLDSS-AGSLEV--ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred ccchHHHHHHHHHHHHcCC-----CccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 1111111111 1111111 133444 566666666655432 44444
Q ss_pred HHhhcCCcEEEEEecCCccc
Q 014268 240 HSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 240 ~~l~~~~~tVI~isql~~~v 259 (427)
+.+.+.+.+||+++|....+
T Consensus 184 ~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 184 RELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred HHHHHCCCEEEEEeCCHHHH
Confidence 44444589999999977653
No 196
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.98 E-value=4.6e-09 Score=97.06 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.++...+....++.+.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~ 95 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTL-LKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENC 95 (200)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHH
Confidence 55999999999999999999 778888877777788898875432 23445677777765554445555443
No 197
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.3e-09 Score=106.61 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC----C---HHHHHHhccccCcc--ccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D---PSLAETIGVKTENL--LLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~----~---~~~~~~ig~~~~~l--~~~~~~~~~~~ 185 (427)
-|++|++++|.|+||+||||| ++++.++..+..+.++++++... . ..+.+.+|+.+++. .++ +.++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~en 106 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTL-LQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKD 106 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHH
Confidence 467999999999999999999 77777777777788888886432 1 23456688888864 232 2344443
Q ss_pred HHHHHHHH--------h--cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 186 LSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 186 ~~~~~~l~--------~--~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+....... . ..-++.+-++ .+... +...+++ |++++...+++++..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSg--Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 107 ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR-SPFELSG--GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhC-CcccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 32211000 0 0001111111 11111 1234444 667777777766543
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+ ++.|.|||+++|.... +..+||.++.|+++...
T Consensus 184 l~~~L~~l~~~~g~tviiitHd~~~------------------~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 184 MMEMFYKLHKEKGLTTVLVTHSMED------------------AARYADQIVVMHKGTVF 225 (290)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 43444444 3469999999997653 44568999898766543
No 198
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.98 E-value=8e-09 Score=99.29 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=91.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh----------cCceEEEEeCCCCCCH------HHHHHhccccCccccCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQP 179 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~----------~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~ 179 (427)
+..|-...|+|++|.||||+++.++..++. ..++|+|+++|...+. .+..++|+.+.++...+.
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dl 165 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDL 165 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheec
Confidence 347778888899999999999988776643 3478999999988763 345567777655433221
Q ss_pred C------C-----HHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcE
Q 014268 180 D------C-----GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI 248 (427)
Q Consensus 180 ~------~-----~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~t 248 (427)
. . ...+.......+++..+++||||.+..+.. |+.....+.+++...+++|+.. ++|.
T Consensus 166 td~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~--------G~s~s~vqv~~fi~~~rkla~~---l~ca 234 (402)
T COG3598 166 TDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYE--------GKSISDVQVKEFIKKTRKLARN---LECA 234 (402)
T ss_pred cccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcC--------CccchhHHHHHHHHHHHHHHHh---cCCe
Confidence 1 1 112233333344667899999999999874 2222235567777777777766 6999
Q ss_pred EEEEecCCccc
Q 014268 249 LIFINQVRAKL 259 (427)
Q Consensus 249 VI~isql~~~v 259 (427)
||+++|....-
T Consensus 235 Iiy~hHtskss 245 (402)
T COG3598 235 IIYIHHTSKSS 245 (402)
T ss_pred EEEEecccccc
Confidence 99999988763
No 199
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=3.7e-09 Score=101.04 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.+..++ ..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 103 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTL-LRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV 103 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHH
Confidence 366999999999999999999 6677776542 36677887764322 23445678888876554445555554
Q ss_pred HHHHH-----------------HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 187 SLVDT-----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 187 ~~~~~-----------------l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
..... ++...++.-.+-+.+. .+...+++ |++++...++++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~LSg--G~~qrv~laral~~~p~lllLDEP~~~LD~ 179 (250)
T PRK14247 104 ALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLD--APAGKLSG--GQQQRLCIARALAFQPEVLLADEPTANLDP 179 (250)
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhc--CCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 32211 1111111000000000 11234444 677777777776643
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+.+ +.|||+++|.... +...||.++.|.++..
T Consensus 180 ~~~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 223 (250)
T PRK14247 180 ENTAKIESLFLELKK-DMTIVLVTHFPQQ------------------AARISDYVAFLYKGQI 223 (250)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCEEEEEECCeE
Confidence 4444444443 7999999996543 4456788888876543
No 200
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.6e-09 Score=105.48 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCcc--ccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l--~~~~~~~~~~~ 185 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++. .+.. .++.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~ 106 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTI-MQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKD 106 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHH
Confidence 467999999999999999999 788888877777778887754321 23445688888774 2332 355444
Q ss_pred HHHHHHHH-------h---cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 186 LSLVDTLI-------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 186 ~~~~~~l~-------~---~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+....... . ..-+..+-++ .+.. .+...+++ |++++...+++++..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (280)
T PRK13649 107 VAFGPQNFGVSQEEAEALAREKLALVGISESLFE-KNPFELSG--GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183 (280)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 33211100 0 0000111111 1111 11234444 667677767666543
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+++.+.|||+++|.... +...||.++.|.++.
T Consensus 184 l~~~l~~~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 184 LMTLFKKLHQSGMTIVLVTHLMDD------------------VANYADFVYVLEKGK 222 (280)
T ss_pred HHHHHHHHHHCCCEEEEEeccHHH------------------HHHhCCEEEEEECCE
Confidence 444444444458999999996543 445688888887654
No 201
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.97 E-value=1.5e-09 Score=103.80 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=33.3
Q ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 114 GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
|-+.+|++++|.|+||+||||| ++++.++.++..+.+++++
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTL-lk~L~G~~~p~~G~i~~~g 60 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTF-IKMLAGVLKPDEGDIEIEL 60 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCCeEEECC
Confidence 3588999999999999999999 7777887766555566654
No 202
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=2.7e-09 Score=101.50 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH---
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~--- 189 (427)
+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++. .++.+.+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 103 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTL-IKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPML 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhh
Confidence 56999999999999999999 777777777667777787754321 233456777777654443 2443332211
Q ss_pred --------HHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHH
Q 014268 190 --------DTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 240 (427)
Q Consensus 190 --------~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~ 240 (427)
..++...+ ++ .+.... ...+++ |++++...++++... +..+.+
T Consensus 104 ~~~~~~~~~~~l~~~~-----l~~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (241)
T PRK14250 104 KGEKNVDVEYYLSIVG-----LNKEYATRD-VKNLSG--GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175 (241)
T ss_pred cCcHHHHHHHHHHHcC-----CCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11111111 11 111111 133443 566666666655432 333333
Q ss_pred Hhhc-CCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 241 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 241 ~l~~-~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
.+++ .+.|||+++|.... +...||.++.|..+.
T Consensus 176 ~~~~~~g~tii~~sH~~~~------------------~~~~~d~i~~l~~G~ 209 (241)
T PRK14250 176 KLKNKMNLTVIWITHNMEQ------------------AKRIGDYTAFLNKGI 209 (241)
T ss_pred HHHHhCCCEEEEEeccHHH------------------HHHhCCEEEEEeCCE
Confidence 3333 58999999996553 445688888887543
No 203
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.97 E-value=1.3e-09 Score=103.33 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=47.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhcccc-CccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKT-ENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~-~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+ +...+....++.+.+
T Consensus 44 i~~Ge~~~i~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l 116 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTT-LKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSF 116 (236)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHH
Confidence 56999999999999999999 788888777767778887654322 23344567765 333333334454443
No 204
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1.3e-09 Score=101.64 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=48.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++ ++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..++...++.+.+
T Consensus 21 i~~-e~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 96 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTL-LRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENL 96 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHH
Confidence 669 9999999999999999 777777776666777787754321 12345678888776555444554443
No 205
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=2e-09 Score=103.41 Aligned_cols=68 Identities=25% Similarity=0.242 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.+++++..... ....+++.+++..+....++.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTL-LNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHH
Confidence 366999999999999999999 777888877666777777654322 11235666666544433444443
No 206
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.96 E-value=3.2e-09 Score=102.28 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCC--------HHHHHHhccccCccccCCCCCHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD--------PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~--------~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
|++|++++|+|+||+||||| ++++.+...+. .+.++++++.... ..+.+.+++.+++..++...++.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 105 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTL-LRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLE 105 (262)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHH
Confidence 56999999999999999999 66777776543 3677787764321 223455788887765544445444
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 106 ~l 107 (262)
T PRK09984 106 NV 107 (262)
T ss_pred HH
Confidence 43
No 207
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.8e-09 Score=104.83 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=89.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccc-cCCCCCHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLV- 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~-~~~~~~~~~~~~~~- 189 (427)
|++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++.. .....++.+.+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTL-ALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred EeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 67999999999999999999 777788877777788888765422 234556888877642 12223443333221
Q ss_pred --------------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 190 --------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 190 --------------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
..++...+ ++...... ...+++ |++++...++++... +
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIG-----LEKYRHRS-PKTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCC-----CHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11111111 11111111 133443 566666666665532 4
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
..+.+.+++.|.|||+++|.... +. .||.++.|.++...
T Consensus 176 ~~~l~~l~~~g~til~~tH~~~~------------------~~-~~d~v~~l~~G~i~ 214 (274)
T PRK13644 176 LERIKKLHEKGKTIVYITHNLEE------------------LH-DADRIIVMDRGKIV 214 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCHHH------------------Hh-hCCEEEEEECCEEE
Confidence 44444444569999999996553 33 38888888876543
No 208
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.96 E-value=3.2e-09 Score=100.06 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H-H----HHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~-~----~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... . . ..+.+++.+++..+....++.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~ 108 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTL-LAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALEN 108 (228)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHH
Confidence 56999999999999999999 778888877777778888764322 1 1 12457887777655544444443
No 209
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=4e-09 Score=101.05 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+.+|++++|.|+||+||||| ++++.+..++ ..+.++++++... . ..+.+.+++.+++..++...++.+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTL-LRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD 104 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence 367999999999999999999 6777777654 2677888876532 1 234456788887765555445554
Q ss_pred HHH
Q 014268 185 ALS 187 (427)
Q Consensus 185 ~~~ 187 (427)
.+.
T Consensus 105 nl~ 107 (253)
T PRK14267 105 NVA 107 (253)
T ss_pred HHH
Confidence 443
No 210
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=3.1e-09 Score=105.44 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC------------------C-HHHHHHhccccCcc-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------------D-PSLAETIGVKTENL- 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~------------------~-~~~~~~ig~~~~~l- 174 (427)
-|++|++++|.|+|||||||| ++++.++..+..+.+++++.... . ..+.+.+++.+++.
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTL-l~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTL-VTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 467999999999999999999 78888887777778888764321 1 23456788888764
Q ss_pred -ccCCCCCHHHHHHH---------------HHHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH---
Q 014268 175 -LLAQPDCGEQALSL---------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--- 234 (427)
Q Consensus 175 -~~~~~~~~~~~~~~---------------~~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--- 234 (427)
.++. .++.+.+.. +..++.. +-++ .+..-. ...+++ |++++...+++++..
T Consensus 127 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-----~gL~~~~~~~~-~~~LSg--GqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 127 YQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNK-----MGLDDSYLERS-PFGLSG--GQKRRVAIAGILAIQPEI 197 (320)
T ss_pred hcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHH-----cCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCE
Confidence 2332 244433321 1111111 1111 111111 234554 777777777776643
Q ss_pred -----------------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 235 -----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 235 -----------------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+..+...+++.+.|||+++|..+. +...||.++.|..+.....
T Consensus 198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~------------------~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH------------------VLEVADEVIVMDKGKILKT 257 (320)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 444444444568999999996543 4456899999887654433
No 211
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.95 E-value=2.9e-09 Score=100.50 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H-HHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P-SLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~-~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+|||||||| ++++.+..++..+.++++++.... . ...+.+++.+++..++...++.+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 96 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTL-LKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENL 96 (230)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHH
Confidence 466999999999999999999 778888877766778887754322 1 2234578888776655544555444
No 212
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.95 E-value=2e-09 Score=111.41 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=93.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCC-------HHHHHHhccccCccc-cCCC-CCH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD-------PSLAETIGVKTENLL-LAQP-DCG- 182 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~-------~~~~~~ig~~~~~l~-~~~~-~~~- 182 (427)
+.+|++++|.|++||||||+++.++..+...+ .+-++|++.+... ..+.+++++.+|+.. ...| .++
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg 111 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIG 111 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHH
Confidence 55999999999999999999766655554332 5667777753222 123456788887643 2222 222
Q ss_pred HHHHH---------------HHHHHHhcCCccEEEEeccc--ccCCCCccCCcccchhHHHHHHHHHHH-----------
Q 014268 183 EQALS---------------LVDTLIRSGSVDVVVVDSVA--ALVPKGELDGEMGDAHMAMQARLMSQA----------- 234 (427)
Q Consensus 183 ~~~~~---------------~~~~l~~~~~~~lvvIDsl~--~l~~~~~~~~~~g~~~~~~~ar~ls~~----------- 234 (427)
.++.+ .+..+++ .|-+..-. ..+ ..+++| |++|+...+.+++..
T Consensus 112 ~Qi~E~~~~h~~~~~~ea~~~a~elL~-----~Vgl~~~~~~~~y-PheLSG--G~rQRv~iAmALa~~P~LLIaDEPTT 183 (539)
T COG1123 112 DQIREALRLHGKGSRAEARKRAVELLE-----QVGLPDPERRDRY-PHQLSG--GMRQRVMIAMALALKPKLLIADEPTT 183 (539)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH-----HcCCCChhhhccC-CcccCc--hHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 22222 2222221 22222211 224 366776 777777777776532
Q ss_pred ----------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 235 ----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 235 ----------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
|..|....++.|+++|++||... .+++.||.++.||+++....
T Consensus 184 aLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~------------------Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLG------------------VVAELADRVVVMYKGEIVET 236 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH------------------HHHHhcCeEEEEECCEEEEe
Confidence 44444444678999999999654 46778999999999876554
No 213
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.95 E-value=3.4e-09 Score=96.09 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHH-------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQA------- 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~------- 185 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.+++++..... ..+.+.+++.+++..+.. .++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTL-LQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence 467999999999999999999 677777766666777887763321 233456788777655443 233322
Q ss_pred -----HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 186 -----LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 186 -----~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
+.+++.+. .+++++++|....-.. . ...+.+.+.++.+ . .+.|||+++|....
T Consensus 102 G~~qrv~laral~--~~p~~lllDEP~~~LD----------~---~~~~~l~~~l~~~----~-~~~tii~~sh~~~~-- 159 (178)
T cd03247 102 GERQRLALARILL--QDAPIVLLDEPTVGLD----------P---ITERQLLSLIFEV----L-KDKTLIWITHHLTG-- 159 (178)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCC----------H---HHHHHHHHHHHHH----c-CCCEEEEEecCHHH--
Confidence 22333333 4689999998776542 0 1123333444443 2 37999999996543
Q ss_pred ccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 261 TFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 261 ~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
++ .+|.++.|..+
T Consensus 160 ----------------~~-~~d~~~~l~~g 172 (178)
T cd03247 160 ----------------IE-HMDKILFLENG 172 (178)
T ss_pred ----------------HH-hCCEEEEEECC
Confidence 33 37777777654
No 214
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=6.2e-09 Score=100.74 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=45.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++.
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTI-AKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence 367999999999999999999 777788877777788888865432 23455678877764
No 215
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=4.9e-09 Score=99.21 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HH---H-HHHhccccCccccCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS---L-AETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~---~-~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... .. + .+.+++.+++..++...++.+.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 109 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTL-LHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence 66999999999999999999 788888877777888888765332 11 1 245788888766555556555443
No 216
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=4.5e-09 Score=102.08 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=45.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-----HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l 174 (427)
-+.+|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTL-FLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence 467999999999999999999 777778877777778888765321 23456788888874
No 217
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.94 E-value=4.2e-09 Score=100.74 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=41.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
+++|++++|.|+||+||||| ++++.++... .+.++++++.... ..+.+.+++.+++.
T Consensus 19 i~~Gei~~l~G~nGsGKSTL-l~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 78 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTL-LARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78 (248)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccC
Confidence 66999999999999999999 6677776654 6778887764322 23344567776654
No 218
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=5.2e-09 Score=100.60 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++..+ ..+.++++++.... ..+.+.+++.+++..++. .++.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 111 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTF-IRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD 111 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence 367999999999999999999 6777776542 46677787654321 123456888887765544 45555
Q ss_pred HHHHHHH---------------HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 185 ALSLVDT---------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 185 ~~~~~~~---------------l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
.+..... ++...++.-.+.+.+. .+...+++ |++++...++++...
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 112 NVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLK--SPALSLSG--GQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhc--CChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 4433211 1111111000000011 11234444 677777777776543
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+++ ++|||+++|.... +..+||.++.|..+.
T Consensus 188 ~~~~~l~~~l~~l~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~ 230 (258)
T PRK14268 188 ISTARIEDLIMNLKK-DYTIVIVTHNMQQ------------------AARISDYTGFFLMGE 230 (258)
T ss_pred HHHHHHHHHHHHHhh-CCEEEEEECCHHH------------------HHHhCCEEEEEECCE
Confidence 4444444443 7999999996543 445688888887654
No 219
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.94 E-value=4.4e-09 Score=101.54 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCcc--ccCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENL--LLAQPDCGEQALS 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l--~~~~~~~~~~~~~ 187 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... . .+.+.+++.+++. .+....++.+.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTL-ARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 66999999999999999999 788888877777788888764332 1 1344588888774 2333345544332
Q ss_pred HHHHHHh-----------cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 188 LVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 188 ~~~~l~~-----------~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
....... ..-+..+-++ .+.... ...+++ |++++...++++... +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LSg--Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l 189 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-PRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVI 189 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100000 0001111111 111111 234444 667777777666532 3
Q ss_pred HHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 236 RKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 236 ~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
..+.+.+. +.+.|||+++|.... +..+||.++.|.++..
T Consensus 190 ~~~l~~~~~~~g~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 190 LELLRKLQQAFGTAYLFITHDLRL------------------VQSFCQRVAVMDKGQI 229 (265)
T ss_pred HHHHHHHHHhcCcEEEEEeCCHHH------------------HHHHhcEEEEEeCCEE
Confidence 33333333 358999999996543 4446788888876543
No 220
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.93 E-value=2.3e-09 Score=108.40 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC----CC--C-HHH----HHHhccccCccccCCCCCHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH----AL--D-PSL----AETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~----~~--~-~~~----~~~ig~~~~~l~~~~~~~~~~ 184 (427)
+++|++++|.|+|||||||| ++++.++..+..+.++++++. .. . ..+ .+.+++.+++..++...++.+
T Consensus 47 i~~Gei~~I~G~nGsGKSTL-lr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSL-LRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 56999999999999999999 778888877777888888751 11 1 111 246889988887766566665
Q ss_pred HHHHHHHHH-------h---cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 185 ALSLVDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 185 ~~~~~~~l~-------~---~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
++.....+. . ..-+..+-++...... ..++++ |++|+...+|+++..
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-~~~LSg--Gq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-PGELSG--GMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 554321100 0 0001111111111111 134444 667777777766543
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+...+ ++.+.|||++||..+. +..++|.++.|..+...
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e------------------~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDE------------------ALKIGNRIAIMEGGRII 244 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 33333333 3469999999997664 23446767776655433
No 221
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.93 E-value=3.6e-09 Score=98.36 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.++++++......+.+.+++.++...+....++.+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l 94 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTL-LRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL 94 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence 367999999999999999999 77888877666677788775432222445567666544443334554443
No 222
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=2.8e-09 Score=103.28 Aligned_cols=156 Identities=10% Similarity=0.067 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC----C-HHHHHHhccccCcccc-CCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLL-AQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~-~~~~~~~~~~~~ 188 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++.... . ..+.+.+++.+++... ....++.+.+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~ 101 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTL-FMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAF 101 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHH
Confidence 366999999999999999999 77888887777777888776432 1 2344568888776431 112233332221
Q ss_pred HHHHH--------h--cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 VDTLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ~~~l~--------~--~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
..... . ..-+..+-++.+... +...+++ |++++...++++... +..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~ 178 (271)
T PRK13638 102 SLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-PIQCLSH--GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178 (271)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-CchhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 10000 0 000001111111111 1233444 566666666665532 4444
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.+.+++.+.|||+++|.... +..+||.++.|.++..
T Consensus 179 l~~~~~~g~tii~vtH~~~~------------------~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 179 IRRIVAQGNHVIISSHDIDL------------------IYEISDAVYVLRQGQI 214 (271)
T ss_pred HHHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 44444458999999996543 3446888888876543
No 223
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=4.3e-09 Score=99.78 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
|.+|++++|.|+||+||||| ++++.+..++..+.++++++.... ....+.+++.+++..++...++.+.+
T Consensus 22 i~~Ge~~~i~G~nG~GKStL-l~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVL-LETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 55999999999999999999 777777777777888888765433 12235678877776555444554444
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.93 E-value=3.3e-09 Score=111.62 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H-H-HHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~-~-~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+.+|++++|.|+|||||||| ++++.++.++..+.+++++..... . . ..+.+++.+++..+....++.+.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 99 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTM-MKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAEN 99 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHH
Confidence 366999999999999999999 788888877777778887754321 1 1 23457887776544444444443
No 225
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.92 E-value=1.1e-08 Score=92.74 Aligned_cols=125 Identities=20% Similarity=0.223 Sum_probs=80.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCH--HHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG--EQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~--~~~~~~~~~l 192 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++.. +++.++... .+. .+.+.+++.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~----LSgGq~qrv~laral 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTA-VKILAGQLIPNGDNDEWDGIT---------PVYKPQYID----LSGGELQRVAIAAAL 86 (177)
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCcEEEECCEE---------EEEEcccCC----CCHHHHHHHHHHHHH
Confidence 368999999999999999999 778888877767777776531 444444332 232 2333445554
Q ss_pred HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc
Q 014268 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 272 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~ 272 (427)
. .+++++++|....-.. . ...+.+...++.+.+ +.+.+||+++|....
T Consensus 87 ~--~~p~lllLDEPts~LD---------~----~~~~~l~~~l~~~~~---~~~~tiiivsH~~~~-------------- 134 (177)
T cd03222 87 L--RNATFYLFDEPSAYLD---------I----EQRLNAARAIRRLSE---EGKKTALVVEHDLAV-------------- 134 (177)
T ss_pred h--cCCCEEEEECCcccCC---------H----HHHHHHHHHHHHHHH---cCCCEEEEEECCHHH--------------
Confidence 3 4689999998776542 0 112333344444432 234899999996543
Q ss_pred CCceeeeecceEEEEEe
Q 014268 273 GGNALKFYASVRLNIKR 289 (427)
Q Consensus 273 gG~~ie~~ad~vi~L~r 289 (427)
+...||.++.+..
T Consensus 135 ----~~~~~d~i~~l~~ 147 (177)
T cd03222 135 ----LDYLSDRIHVFEG 147 (177)
T ss_pred ----HHHhCCEEEEEcC
Confidence 4446788877754
No 226
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.92 E-value=6.8e-09 Score=99.43 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.. +..+.++++++.... ..+.+.+++.+++..++. .++.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 106 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTF-LRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFEN 106 (253)
T ss_pred EeCCCEEEEECCCCCCHHHH-HHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHH
Confidence 66999999999999999999 667766642 346677887764321 233456888888765554 355554
Q ss_pred HHHHHHHHh-------cCC----ccEEEE-eccccc--CCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 LSLVDTLIR-------SGS----VDVVVV-DSVAAL--VPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 ~~~~~~l~~-------~~~----~~lvvI-Dsl~~l--~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+........ ... .+.+-+ +.+... .+...+++ |++++...++++...
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (253)
T PRK14242 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG--GQQQRLCIARALAVEPEVLLMDEPASALDPIA 184 (253)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 432211000 000 000000 000000 11234444 677777777776542
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+++ +.|||+++|.... +...||.++.|.++.
T Consensus 185 ~~~l~~~l~~~~~-~~tvii~tH~~~~------------------~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 185 TQKIEELIHELKA-RYTIIIVTHNMQQ------------------AARVSDVTAFFYMGK 225 (253)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEecHHH------------------HHHhCCEEEEEECCE
Confidence 4444444443 7899999996543 445688888887654
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.92 E-value=4.2e-09 Score=110.55 Aligned_cols=136 Identities=14% Similarity=0.164 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSL-- 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~~~-- 188 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..+....++.+.+..
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 98 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTL-LKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR 98 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence 367999999999999999999 888888877777888888764321 1223457777776544443444433321
Q ss_pred ----------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH------------------
Q 014268 189 ----------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 234 (427)
Q Consensus 189 ----------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------ 234 (427)
+..++...+ ++..... +...+++ |++|+...++++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~-~~~~LSg--Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 99 YPTKGMFVDQDKMYRDTKAIFDELD-----IDIDPRA-KVATLSV--SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred ccccccccCHHHHHHHHHHHHHHcC-----CCCCccC-chhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 111111111 1111111 1133444 666666666666532
Q ss_pred --HHHHHHHhhcCCcEEEEEecCCccc
Q 014268 235 --LRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 235 --L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
+..+.+.+++.+.|||+++|....+
T Consensus 171 ~~l~~~l~~l~~~g~tvii~tH~~~~~ 197 (491)
T PRK10982 171 NHLFTIIRKLKERGCGIVYISHKMEEI 197 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 4444444455699999999977653
No 228
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.92 E-value=3.2e-09 Score=96.48 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccC--------ccc--cCCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTE--------NLL--LAQPDC 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~--------~l~--~~~~~~ 181 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+...+++.++ ... .....+
T Consensus 21 ~i~~G~~~~l~G~nGsGKStL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTL-LKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 367999999999999999999 777788777777778887764322 223334554432 000 011122
Q ss_pred HH--HHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccc
Q 014268 182 GE--QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 182 ~~--~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
.- +-+.+++.+. .+++++++|....-.. . .....+.+.++.+.+ +.++|+|+++|....
T Consensus 100 ~G~~qrl~laral~--~~p~llllDEP~~~LD---------~----~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~- 160 (180)
T cd03214 100 GGERQRVLLARALA--QEPPILLLDEPTSHLD---------I----AHQIELLELLRRLAR---ERGKTVVMVLHDLNL- 160 (180)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCCccCCC---------H----HHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH-
Confidence 22 2233444443 4689999998776542 0 112334444444432 248999999996553
Q ss_pred cccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 260 STFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 260 ~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+...||.++.+..+
T Consensus 161 -----------------~~~~~d~~~~l~~g 174 (180)
T cd03214 161 -----------------AARYADRVILLKDG 174 (180)
T ss_pred -----------------HHHhCCEEEEEECC
Confidence 33457878777654
No 229
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=6.2e-09 Score=101.39 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l 174 (427)
-|++|++++|.|+||+||||| ++++.++..+..+.++++++.... ..+.+.+|+.+++.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~ 94 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTI-AKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecCh
Confidence 467999999999999999999 778888877777788888765432 23456688887764
No 230
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.92 E-value=5.9e-09 Score=99.50 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC-----ceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-----GYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~-----~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++.++. .+.++++++.... ..+.+.+++.+++..+.. .++.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 100 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTL-LRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYD 100 (247)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHH
Confidence 367999999999999999999 77777776654 6777887764321 234556888887765544 55554
Q ss_pred HHHHHHH----------------HHhcCCccEEEE-ecccccCCCCccCCcccchhHHHHHHHHHHH-------------
Q 014268 185 ALSLVDT----------------LIRSGSVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA------------- 234 (427)
Q Consensus 185 ~~~~~~~----------------l~~~~~~~lvvI-Dsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------- 234 (427)
.+..... ++...++.- .+ +.+. .+...+++ |++++...++++...
T Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~--~~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~L 175 (247)
T TIGR00972 101 NIAYGPRLHGIKDKKELDEIVEESLKKAALWD-EVKDRLH--DSALGLSG--GQQQRLCIARALAVEPEVLLLDEPTSAL 175 (247)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhHhh--CCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 4432111 111111100 00 1111 11234444 667777777766533
Q ss_pred -------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 -------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+++ ++|||+++|.... +...||.++.|.++..
T Consensus 176 D~~~~~~l~~~l~~~~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 176 DPIATGKIEELIQELKK-KYTIVIVTHNMQQ------------------AARISDRTAFFYDGEL 221 (247)
T ss_pred CHHHHHHHHHHHHHHHh-cCeEEEEecCHHH------------------HHHhCCEEEEEECCEE
Confidence 4444444444 4899999996543 4456888888876543
No 231
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.92 E-value=7.8e-09 Score=99.96 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-|++|++++|.|+||+||||| ++++.++..+ ..+.++++++.... ..+.+.+++.++...++.. ++.+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e 118 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTF-LRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYE 118 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHH
Confidence 367999999999999999999 7777777642 56778888765321 2344567888877554443 5555
Q ss_pred HHHHHHHHHh------------cCCccEEEEec-cc-cc-CCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 185 ALSLVDTLIR------------SGSVDVVVVDS-VA-AL-VPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 185 ~~~~~~~l~~------------~~~~~lvvIDs-l~-~l-~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
.+........ ..-+..+-++. +. .+ .....+++ |++|+...++++...
T Consensus 119 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 119 NVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG--GQQQRLCIARAIAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 4432111000 00001111110 00 00 11234444 677777777776532
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+.+ +.|||+++|.... +...||.++.|.++.
T Consensus 197 ~~~~~l~~~L~~l~~-~~tiiivtH~~~~------------------~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 197 IATAKVEELIDELRQ-NYTIVIVTHSMQQ------------------AARVSQRTAFFHLGN 239 (267)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEEcCHHH------------------HHhhCCEEEEEECCE
Confidence 4444444443 6899999996543 445678888887654
No 232
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=4.4e-09 Score=102.59 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--C---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~---~~~~~~ig~~~~~l 174 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.++++++... . ..+.+.+|+.+++.
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTL-l~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTL-FQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence 367999999999999999999 78888887777788888886542 1 23456788888765
No 233
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.92 E-value=4.3e-09 Score=111.01 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=48.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H-H-HHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~-~-~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+++|++++|.|+|||||||| ++++.++..+..+.++++++.... . . ..+.+++.+++..+....++.+.
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 100 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTL-MKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLEN 100 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHH
Confidence 366999999999999999999 788888877777778887764322 1 1 22347887776544443444433
No 234
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.91 E-value=5.4e-09 Score=98.42 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=50.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
=+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..++. .++.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl 101 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTL-LKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNL 101 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHH
Confidence 367999999999999999999 777777777667778887754322 234556788877765543 3555443
No 235
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.91 E-value=6.5e-09 Score=95.18 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=44.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--C---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~---~~~~~~ig~~~~~l 174 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++... . ..+.+.+++.+++.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTL-LLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 367999999999999999999 77888887777777888775432 1 13345678887764
No 236
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.91 E-value=5.2e-09 Score=98.88 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=43.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCCCCCHHH-HHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALDPSL-AETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~~~~~~~-~~~ig~~~~~l 174 (427)
+++|++++|.|+||+||||| ++++.++.++ ..+.++++++....... .+.+++.+++.
T Consensus 9 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLT-CLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71 (230)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCc
Confidence 67999999999999999999 7777777765 56777888765432222 24578877765
No 237
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=7.2e-09 Score=94.60 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
.|+++.+++|.||+||||||| |.++..+-.. -.+-+++++++..+ ..+.+++|+++|+..-+. .+..+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~-LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIyd 106 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTL-LRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYD 106 (253)
T ss_pred eccCCceEEEECCCCcCHHHH-HHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHH
Confidence 799999999999999999999 6666555321 13567777776655 357889999998765443 44443
Q ss_pred HHHHHHHH-----------HhcCCccEEEEecccccC--CCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 185 ALSLVDTL-----------IRSGSVDVVVVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 185 ~~~~~~~l-----------~~~~~~~lvvIDsl~~l~--~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
.+....++ ++..--+.-.+|.+..-. +...++| |++|+...||+++-.
T Consensus 107 NVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSG--GQQQRLcIARalAv~PeVlLmDEPtSALDPIs 184 (253)
T COG1117 107 NVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG--GQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184 (253)
T ss_pred HHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCCh--hHHHHHHHHHHHhcCCcEEEecCcccccCchh
Confidence 33322111 111001122344443222 1234555 788888888887632
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCcc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
+..|..+++ .+-|||+++|.+..
T Consensus 185 T~kIEeLi~eLk-~~yTIviVTHnmqQ 210 (253)
T COG1117 185 TLKIEELITELK-KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHHHHH-hccEEEEEeCCHHH
Confidence 667777776 57899999997764
No 238
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.91 E-value=6.6e-09 Score=93.24 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHH---------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQA--------- 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~--------- 185 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++.. +.+++.+++..+. ..++.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~~~~~L 92 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSL-FRALAGLWPWGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYPWDDVL 92 (166)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCC--------ceEEEECCCCccc-cccHHHHhhccCCCCC
Confidence 366999999999999999999 67777776665666666542 2344444443322 1222222
Q ss_pred -------HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 186 -------LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 186 -------~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
+.+++.+. .+++++++|....-... ...+.+.+.++. .+.|+|+++|....
T Consensus 93 S~G~~~rv~laral~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~-------~~~tiiivsh~~~~ 150 (166)
T cd03223 93 SGGEQQRLAFARLLL--HKPKFVFLDEATSALDE-------------ESEDRLYQLLKE-------LGITVISVGHRPSL 150 (166)
T ss_pred CHHHHHHHHHHHHHH--cCCCEEEEECCccccCH-------------HHHHHHHHHHHH-------hCCEEEEEeCChhH
Confidence 22233333 46889999987765420 111222223322 26899999996431
Q ss_pred ccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 259 LSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 259 v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
. ..||.++.+.++
T Consensus 151 ------------------~-~~~d~i~~l~~~ 163 (166)
T cd03223 151 ------------------W-KFHDRVLDLDGE 163 (166)
T ss_pred ------------------H-hhCCEEEEEcCC
Confidence 2 357888777643
No 239
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.91 E-value=7.5e-09 Score=97.34 Aligned_cols=56 Identities=25% Similarity=0.276 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l 174 (427)
+.+|++++|.|+||+||||| ++++.+...+..+.++++++... ...+.+++.+++.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~ 58 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTL-LRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRH 58 (223)
T ss_pred cCCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCccch--HhhCcEEEecccc
Confidence 67999999999999999999 77777777766777888876532 2234567766654
No 240
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.90 E-value=4.4e-09 Score=96.98 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=48.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+.+|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++..+....++.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTL-LRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENL 94 (198)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHH
Confidence 66999999999999999999 777777776667778887764322 23345577776665444434554443
No 241
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=4.7e-09 Score=102.35 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=44.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCc---eEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG---YCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~---~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-|++|++++|.|+||+||||| ++++.++..+.. +.++++++.... ..+...+|+.+++.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTL-l~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~ 93 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTI-SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNP 93 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECH
Confidence 367999999999999999999 677777765543 678888765432 23445678887765
No 242
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.90 E-value=8.6e-09 Score=99.73 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l 174 (427)
-|.+|++++|.|+||+||||| +.++.++..+..+.+++++..... ..+.+.+++.+++.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTL-ARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcCh
Confidence 366999999999999999999 677777776667778887764332 12345688888775
No 243
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.90 E-value=5.6e-09 Score=98.48 Aligned_cols=146 Identities=17% Similarity=0.231 Sum_probs=95.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccC---ccccCCCC---------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTE---NLLLAQPD--------- 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~---~l~~~~~~--------- 180 (427)
-||+|+++++.|+||+||||+ +.+..+...+.++.+-+.+..+++ +.+.++++++.. .+.|..|.
T Consensus 46 ~IP~G~ivgflGaNGAGKSTt-LKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~ 124 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTT-LKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL 124 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhh-HHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence 488999999999999999999 899999988888888888888887 455666665532 22222211
Q ss_pred ----CHHHHHH-------------------------------HHHHHHhcCCccEEEEecccccCCCCccCCcccchhHH
Q 014268 181 ----CGEQALS-------------------------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (427)
Q Consensus 181 ----~~~~~~~-------------------------------~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~ 225 (427)
...++.+ ++..+ -++++++++|..+-=.. +
T Consensus 125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaL--Lh~p~VLfLDEpTvgLD-------------V 189 (325)
T COG4586 125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAAL--LHPPKVLFLDEPTVGLD-------------V 189 (325)
T ss_pred HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHh--cCCCcEEEecCCccCcc-------------h
Confidence 0000000 01111 25678888887654321 1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 226 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 226 ~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
.....+..+++.. ..++++||+++||.... ++.+|+.++.+..+..+++++
T Consensus 190 ~aq~~ir~Flke~---n~~~~aTVllTTH~~~d------------------i~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 190 NAQANIREFLKEY---NEERQATVLLTTHIFDD------------------IATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred hHHHHHHHHHHHH---HHhhCceEEEEecchhh------------------HHHhhhheEEeeCCcEeeccc
Confidence 1112233344433 35589999999997654 667899999999988777653
No 244
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.90 E-value=4.9e-09 Score=101.34 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=44.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.++++++.... ..+.+.+++.+++.
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTL-AKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence 467999999999999999999 788888877777777887754322 22334578777764
No 245
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.90 E-value=1e-08 Score=99.52 Aligned_cols=58 Identities=29% Similarity=0.395 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC--------ceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--------GYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~--------~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
+.+|++++|.|+||+||||| ++++.+...+. .+.++++++.... ..+.+.+++.+++.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTL-l~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTL-LKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 66999999999999999999 77777776654 5677887764322 23444567776654
No 246
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.90 E-value=4.1e-09 Score=97.73 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.++...+....++.+.+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 95 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSL-LRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL 95 (204)
T ss_pred EECCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence 367999999999999999999 777888777767778887764322 23344566666655444434444443
No 247
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=6.5e-09 Score=98.42 Aligned_cols=62 Identities=31% Similarity=0.514 Sum_probs=46.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..++
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTI-LRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh
Confidence 367999999999999999999 777788877777778887754322 23445678877775544
No 248
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.90 E-value=4e-09 Score=101.31 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=106.0
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhcc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGV 169 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~ 169 (427)
-++..-|+.+.+. -++.|++.+|.|-+||||||| +.++..+..+..+-+++++++... ..+.+.+++
T Consensus 37 ~tg~vvGv~~~sl-----~v~~GeIfViMGLSGSGKSTL-vR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sM 110 (386)
T COG4175 37 KTGLVVGVNDASL-----DVEEGEIFVIMGLSGSGKSTL-VRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110 (386)
T ss_pred hhCcEEeecccee-----eecCCeEEEEEecCCCCHHHH-HHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhh
Confidence 3455666666554 366999999999999999999 788888888888889999886544 235567899
Q ss_pred ccCccccCCCCCHHHHHHHH----------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----
Q 014268 170 KTENLLLAQPDCGEQALSLV----------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----- 234 (427)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~~~----------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----- 234 (427)
++|++.+.+..++.++..+- +.-.....+.+|-++....-+| .+++| |.+|++..+|+++..
T Consensus 111 VFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlL 187 (386)
T COG4175 111 VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILL 187 (386)
T ss_pred hhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEE
Confidence 99998877766665543321 0001112345666666666664 77887 788888888887643
Q ss_pred -------------------HHHHHHHhhcCCcEEEEEecCCcc
Q 014268 235 -------------------LRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 235 -------------------L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
|..|.+. ++.||||+||..++
T Consensus 188 MDEaFSALDPLIR~~mQdeLl~Lq~~---l~KTIvFitHDLdE 227 (386)
T COG4175 188 MDEAFSALDPLIRTEMQDELLELQAK---LKKTIVFITHDLDE 227 (386)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHH---hCCeEEEEecCHHH
Confidence 4445544 69999999998775
No 249
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=1.2e-08 Score=96.35 Aligned_cols=62 Identities=31% Similarity=0.542 Sum_probs=46.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++..+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTL-VNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF 88 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec
Confidence 367999999999999999999 777777777667778887764321 23455678877765444
No 250
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.89 E-value=9.7e-09 Score=99.47 Aligned_cols=161 Identities=21% Similarity=0.241 Sum_probs=96.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCCCCC--H-----HHHHHhccccCccccC-CCC-C
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALD--P-----SLAETIGVKTENLLLA-QPD-C 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~~~~--~-----~~~~~ig~~~~~l~~~-~~~-~ 181 (427)
-+.+|++++|+|++|||||++++.++..+..+ .++-++|++++... . .+.+.+++.+|+.... .|. +
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~ 106 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT 106 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhh
Confidence 46799999999999999999988877766522 23467788775443 2 2344577888774322 121 1
Q ss_pred -HHHHHHHHHHHHh-----------cCCccEEEEec---ccccCCCCccCCcccchhHHHHHHHHHHH------------
Q 014268 182 -GEQALSLVDTLIR-----------SGSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA------------ 234 (427)
Q Consensus 182 -~~~~~~~~~~l~~-----------~~~~~lvvIDs---l~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------ 234 (427)
..++.+.+..... ..-++.|-|+. +...+| .+++| |++||...|-+++..
T Consensus 107 Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P~LlIADEPTTA 183 (316)
T COG0444 107 IGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNPKLLIADEPTTA 183 (316)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcch
Confidence 2333333221100 00122333332 333443 66776 667776666555422
Q ss_pred ---------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 ---------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 ---------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
|.-|.+..+++|+++|++||... .+.+.||.+..||-+..+..+
T Consensus 184 LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~------------------vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 184 LDVTVQAQILDLLKELQREKGTALILITHDLG------------------VVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhcceEEEEECcEEEEeC
Confidence 44444444568999999999654 356678999999888766554
No 251
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.88 E-value=6e-09 Score=96.50 Aligned_cols=70 Identities=26% Similarity=0.402 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC---C----HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D----PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~---~----~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++++... . ..+.+.+++.++...++...++.+.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~ 97 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTL-LNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL 97 (206)
T ss_pred EeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHH
Confidence 56999999999999999999 77778887776777888877522 1 12345678877766555444554433
No 252
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=1e-08 Score=95.70 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccC-----ccccC---CCCC-----
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE-----NLLLA---QPDC----- 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~-----~l~~~---~~~~----- 181 (427)
-+.+|+.++|.|+||+||||| ++++.++.++..+-+.+.+.-+. .+.-..|++++ |+.+. .-.+
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTL-lkliaGi~~Pt~G~v~v~G~v~~--li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTL-LKLIAGIYKPTSGKVKVTGKVAP--LIELGAGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhCccCCCCceEEEcceEeh--hhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 367999999999999999999 99999999887777766654321 11111222211 11000 0000
Q ss_pred --HHHHHHH----------------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHH
Q 014268 182 --GEQALSL----------------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (427)
Q Consensus 182 --~~~~~~~----------------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~ 237 (427)
.+++.++ .-.+...-+++++++|.+.+.- +. ..++ +.+.+
T Consensus 126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG----------D~---~F~~---K~~~r 189 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG----------DA---AFQE---KCLER 189 (249)
T ss_pred HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC----------CH---HHHH---HHHHH
Confidence 1111111 0011124578999999988764 21 1112 22333
Q ss_pred HHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
+ .++.+.+.|||++||... .+.++||..++|.++.....++
T Consensus 190 l-~e~~~~~~tiv~VSHd~~------------------~I~~~Cd~~i~l~~G~i~~~G~ 230 (249)
T COG1134 190 L-NELVEKNKTIVLVSHDLG------------------AIKQYCDRAIWLEHGQIRMEGS 230 (249)
T ss_pred H-HHHHHcCCEEEEEECCHH------------------HHHHhcCeeEEEeCCEEEEcCC
Confidence 3 233335799999999654 5788899999999887665554
No 253
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.88 E-value=8e-09 Score=97.91 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=48.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..++. .++.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~n 95 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDN 95 (237)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHH
Confidence 67999999999999999999 777777776666778887764321 234456788877755442 344433
No 254
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.88 E-value=8.4e-09 Score=94.94 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=45.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
+++|++++|.|+||+||||| ++++.++..+..+.++++++..... ..+.+++.+++..+....++.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSL-LRMIAGIMQPSSGNIYYKNCNINNI-AKPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCcccChh-hhhhEEeccCCcCCCccCCHHH
Confidence 67999999999999999999 7888888777777788887643221 1233555555443333334433
No 255
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.1e-08 Score=98.05 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=48.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh--c---CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--Q---GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~--~---~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|++|++++|+|+||+||||| ++++.++.. + ..+.++++++.... ..+.+.+++.+++..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTV-LRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHH
Confidence 67999999999999999999 677777653 2 35667887764321 2334567888887665554555444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 106 l 106 (252)
T PRK14256 106 V 106 (252)
T ss_pred H
Confidence 4
No 256
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.88 E-value=6.3e-09 Score=103.67 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCC---HHH----HHHhccccCccc--cCCCCCHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD---PSL----AETIGVKTENLL--LAQPDCGE 183 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~---~~~----~~~ig~~~~~l~--~~~~~~~~ 183 (427)
|++|++++|.|+|||||||| ++++.++..+. .+.++|+++.... ..+ .+.+++.+++.. +....++.
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL-~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQT-AFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 66999999999999999999 66666666553 6778888775432 222 135788888752 33333333
Q ss_pred HHH-HH---------------HHHHHhcCCccEEEEecc---cccCCCCccCCcccchhHHHHHHHHHHH----------
Q 014268 184 QAL-SL---------------VDTLIRSGSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMSQA---------- 234 (427)
Q Consensus 184 ~~~-~~---------------~~~l~~~~~~~lvvIDsl---~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------- 234 (427)
+.+ .. +..++. .+-++.. .... ..++++ |++|+...+++++..
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~-----~vgL~~~~~~~~~~-p~~LSg--G~~QRv~IArAL~~~P~llilDEPt 189 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLD-----AVKMPEARKRMKMY-PHEFSG--GMRQRVMIAMALLCRPKLLIADEPT 189 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCCCChHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 322 11 111111 1112211 0112 245565 777777777776643
Q ss_pred ----------HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 235 ----------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 235 ----------L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+..+.+.+ ++.+.+||++||.... +..+||.++.|+.+..+..
T Consensus 190 s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~------------------~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV------------------VAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 33333333 4469999999996553 4446788888887665443
No 257
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.88 E-value=7.7e-09 Score=109.09 Aligned_cols=149 Identities=11% Similarity=0.177 Sum_probs=91.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H--HHHHHhccccCcc---ccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENL---LLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~--~~~~~ig~~~~~l---~~~~~~~~~~~~~~ 188 (427)
+++|++++|.|+|||||||| ++++.++.++..+.++++++.... . .+.+.+++.++.. .+....++.+.+..
T Consensus 286 i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTEL-MNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 67999999999999999999 777778777777778887764322 1 2234578887752 23333344433221
Q ss_pred ------------------------HHHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH---------
Q 014268 189 ------------------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------- 234 (427)
Q Consensus 189 ------------------------~~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------- 234 (427)
+..++.. +-+. .... .+...+++ |++|+...+++++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~-~~~~~LSg--Gq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQREL-----LALKCHSVN-QNITELSG--GNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHh-----cCCCCCCcc-CccccCCh--HHHHHHHHHHHHhcCCCEEEECCC
Confidence 1111111 1111 1111 11245555 777777777777643
Q ss_pred -----------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 -----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 -----------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+.++.+.+++.|.|||++||.... +..+||.++.|+++.
T Consensus 437 t~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 437 TRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE------------------IITVCDRIAVFCEGR 486 (510)
T ss_pred CCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH------------------HHhhCCEEEEEECCE
Confidence 445555544569999999996543 455688888887553
No 258
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=6.9e-09 Score=109.34 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCC---H-HHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALD---P-SLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~---~-~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+.+|++++|.|+|||||||| ++++.++.++ ..+.++++++.... . .+.+.+++.+++..++...++.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 102 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTL-MKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLEN 102 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHH
Confidence 366999999999999999999 7777777764 56778887764432 1 123457888877554444444443
No 259
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=6.1e-09 Score=101.28 Aligned_cols=58 Identities=31% Similarity=0.283 Sum_probs=45.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
+.+|++++|+|+||+||||| ++++.+..++..+.++++++.... ..+.+.+|+.+++.
T Consensus 30 i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTT-ARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNP 90 (277)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECH
Confidence 66999999999999999999 777777777777788888765432 23455678887764
No 260
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.5e-08 Score=97.50 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh--c---CceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--Q---GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~--~---~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.+... + ..+.++++++... . ..+.+.+++.+++..++.. ++.+.
T Consensus 35 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 112 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTF-IKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDN 112 (259)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHH
Confidence 67999999999999999999 666666654 2 3567778776432 1 2344568888877655443 55444
Q ss_pred HHHHHHH----------------HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 186 LSLVDTL----------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 186 ~~~~~~l----------------~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
+...... ++..++.-.+.+.+.. +...+++ |++++...++.+...
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~--~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~ 188 (259)
T PRK14274 113 VAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT--QALSLSG--GQQQRLCIARALATNPDVLLMDEPTSALDP 188 (259)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC--CcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 4322111 0000000000011111 1233444 666676766666532
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+...+++ +.|||+++|.... +...||.++.|..+..
T Consensus 189 ~~~~~l~~~l~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i 232 (259)
T PRK14274 189 VSTRKIEELILKLKE-KYTIVIVTHNMQQ------------------AARVSDQTAFFYMGEL 232 (259)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEEcCHHH------------------HHHhCCEEEEEECCEE
Confidence 4444445444 6899999996543 4556888888876543
No 261
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.87 E-value=1.2e-08 Score=107.10 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=43.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTL-l~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSAL-ARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN 86 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence 367999999999999999999 788888777666777776654321 23345578777653
No 262
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.87 E-value=1.4e-09 Score=98.24 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=110.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHH--HH-HhccccCccccCCCCCHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSL--AE-TIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~--~~-~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
.+.+|++++|.||||+||||. ..++.++.+++.+.++++..+... ++. ++ -+||.+|...++...++++.+..+-
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~-Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vl 104 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTT-FYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL 104 (243)
T ss_pred EEcCCcEEEEECCCCCCceeE-EEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHH
Confidence 477999999999999999998 788888888888999999887654 322 22 2678899988888888877654433
Q ss_pred HHHhc------CC--c----cEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 191 TLIRS------GS--V----DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 191 ~l~~~------~~--~----~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
..... .+ + .-+-|..+..- +...++| |++.+...||+++.. ++++
T Consensus 105 E~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-~a~sLSG--GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~i 181 (243)
T COG1137 105 EIREKDLKKAERKEELDALLEEFHITHLRDS-KAYSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI 181 (243)
T ss_pred hhhhcchhHHHHHHHHHHHHHHhchHHHhcC-ccccccc--chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHH
Confidence 22110 00 0 00111122221 1345565 788888888887753 8899
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
.+.++..|+-|+++.|..|+- -..||....++.+....+|+
T Consensus 182 I~~L~~rgiGvLITDHNVREt------------------L~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 182 IKHLKDRGIGVLITDHNVRET------------------LDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred HHHHHhCCceEEEccccHHHH------------------HhhhheEEEEecCeEEecCC
Confidence 999999999999999976641 12366667777766666554
No 263
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.87 E-value=1.2e-08 Score=94.32 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++..+....++.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTL-LRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 67999999999999999999 788888877767777777654322 334456777766554433334433
No 264
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.87 E-value=5.7e-09 Score=112.61 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=95.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCccc--cCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLL--LAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l~--~~~~~~~~~~~ 186 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.++++++.... . .+.+.+++.+++.. +....++.+.+
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTT-GRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 467999999999999999999 777778877777778887764321 1 23346788888752 33344555443
Q ss_pred HHHHHHHh-----------cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 187 SLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 187 ~~~~~l~~-----------~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
........ ..-+..+-++ ...... ..++++ |++|+...+++++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~ 501 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 32110000 0001112222 111122 245666 778888887777643
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+ ++.|.|||++||.... +.++||.++.|+.+...
T Consensus 502 i~~ll~~l~~~~g~tvi~isHdl~~------------------v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 502 IINLLLDLQRDFGIAYLFISHDMAV------------------VERISHRVAVMYLGQIV 543 (623)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 44444444 4469999999996653 44568888888776544
No 265
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.1e-08 Score=99.06 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=45.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++++.... ..+.+.+++.+++.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTI-SKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP 92 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence 467999999999999999999 778888877777778888765432 23455678887764
No 266
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.86 E-value=2e-09 Score=99.58 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCC---HHH-HHHhccccCccccCCCCCHHHHHH--
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALS-- 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~---~~~-~~~ig~~~~~l~~~~~~~~~~~~~-- 187 (427)
+.+|++++|.|+||+||||| ++++.+.. .+..+.++++++.... ... ...+++.+++..+....+..+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTL-AKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred ECCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 55999999999999999999 67777763 4556678888765433 122 234777777654444344444332
Q ss_pred -------------HHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEec
Q 014268 188 -------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (427)
Q Consensus 188 -------------~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isq 254 (427)
+++.+ -.+++++++|....-.. . .....+...|+.+. +.+.|||+++|
T Consensus 102 ~~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD----------~---~~~~~l~~~L~~~~----~~~~tiii~sh 162 (200)
T cd03217 102 NEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLD----------I---DALRLVAEVINKLR----EEGKSVLIITH 162 (200)
T ss_pred cccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCC----------H---HHHHHHHHHHHHHH----HCCCEEEEEec
Confidence 22222 24688999998765441 0 11233444454443 34899999999
Q ss_pred CCccccccccCCCeeeccCCceeee-ecceEEEEEeccc
Q 014268 255 VRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGL 292 (427)
Q Consensus 255 l~~~v~~~~~~~~~~~~~gG~~ie~-~ad~vi~L~r~~~ 292 (427)
.... +.. +||.++.|..+..
T Consensus 163 ~~~~------------------~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 163 YQRL------------------LDYIKPDRVHVLYDGRI 183 (200)
T ss_pred CHHH------------------HHHhhCCEEEEEECCEE
Confidence 6542 344 5888888876543
No 267
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=5e-09 Score=102.49 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=88.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC-------C-HHHHHHhccccCcccc-CCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------D-PSLAETIGVKTENLLL-AQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~-------~-~~~~~~ig~~~~~l~~-~~~~~~~~~ 185 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.++++++... . ..+.+.+++.+++... ..+.++.+.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 111 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTM-IQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD 111 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence 467999999999999999999 77777777766677788775421 1 2334567887776421 112244443
Q ss_pred HHHHHHHHh-------c---CCccEEEE-ecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 186 LSLVDTLIR-------S---GSVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 186 ~~~~~~l~~-------~---~~~~lvvI-Dsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+........ . .-...+-+ +.+... +...+++ |++++...++++...
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 112 IAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKR-SPFELSG--GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcC-ChhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 332111000 0 00001111 011111 1234444 677777777766543
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+...+ ++.+++||+++|.... +..+||.++.|.++.
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMDQ------------------VLRIADEVIVMHEGK 228 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCE
Confidence 33333333 3358999999996543 445688888887654
No 268
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.86 E-value=1.1e-08 Score=107.73 Aligned_cols=137 Identities=16% Similarity=0.253 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCC---HH-HHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALD---PS-LAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~---~~-~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|+|||||||| ++++.+..++ ..+.++++++.... .. ..+.+++.+++..+....++.+.+..
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTL-l~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 101 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTL-MKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL 101 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence 467999999999999999999 7777777664 46777887754332 11 23457888877654444455444322
Q ss_pred H-------------------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 189 V-------------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 189 ~-------------------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
. ..++...+ ++....-.+...+++ |++|+...++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~~LSg--G~~qrv~iA~al~~~p~lllLDEPt~~LD~ 174 (500)
T TIGR02633 102 GNEITLPGGRMAYNAMYLRAKNLLRELQ-----LDADNVTRPVGDYGG--GQQQLVEIAKALNKQARLLILDEPSSSLTE 174 (500)
T ss_pred hccccccccccCHHHHHHHHHHHHHHcC-----CCCCcccCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 1 11111111 111100011234555 777777777776643
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccc
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
+..+.+.+++.+.|||+++|....+
T Consensus 175 ~~~~~l~~~l~~l~~~g~tviiitHd~~~~ 204 (500)
T TIGR02633 175 KETEILLDIIRDLKAHGVACVYISHKLNEV 204 (500)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 4444455555699999999976654
No 269
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.86 E-value=8.4e-09 Score=108.56 Aligned_cols=136 Identities=18% Similarity=0.280 Sum_probs=81.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSL-- 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~~~-- 188 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..+....++.+.+..
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTL-LKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence 477999999999999999999 788888877767778887654321 1233457887776554444444433322
Q ss_pred ----------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH------------------
Q 014268 189 ----------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 234 (427)
Q Consensus 189 ----------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------ 234 (427)
+..++...+ ++..... +...+++ |++|+...++++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~-~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (501)
T PRK11288 105 LPHKGGIVNRRLLNYEAREQLEHLG-----VDIDPDT-PLKYLSI--GQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 (501)
T ss_pred cccccCCCCHHHHHHHHHHHHHHcC-----CCCCcCC-chhhCCH--HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence 111111111 1111111 1234444 666666666666543
Q ss_pred --HHHHHHHhhcCCcEEEEEecCCccc
Q 014268 235 --LRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 235 --L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
+..+...+++.|.|||+++|....+
T Consensus 177 ~~l~~~l~~~~~~g~tiiiitHd~~~~ 203 (501)
T PRK11288 177 EQLFRVIRELRAEGRVILYVSHRMEEI 203 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 4444444445689999999976643
No 270
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=98.54 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=47.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-|++|++++|.|+||+||||| ++++.++.. +..+.++++++... . ..+.+.+++.+++..+.. .++.+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 112 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTL-LRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYD 112 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHH
Confidence 477999999999999999999 666666653 24566778775432 1 234556888887755443 44444
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 113 nl 114 (260)
T PRK10744 113 NI 114 (260)
T ss_pred HH
Confidence 43
No 271
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=3.6e-08 Score=87.39 Aligned_cols=116 Identities=24% Similarity=0.359 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHH--HHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ--ALSLVD 190 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~--~~~~~~ 190 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++.+.... ..+...+++.++ .+.-+ .+.+++
T Consensus 22 i~~g~~~~i~G~nGsGKStl-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~~ 93 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTL-LRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALAR 93 (157)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHHH
Confidence 56999999999999999999 677777766677778888764432 233444566554 23222 233344
Q ss_pred HHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 191 TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
.+. .+++++++|....-.. . .....+...++.+ ++.+.++|+++|....
T Consensus 94 ~l~--~~~~i~ilDEp~~~lD----------~---~~~~~l~~~l~~~----~~~~~tii~~sh~~~~ 142 (157)
T cd00267 94 ALL--LNPDLLLLDEPTSGLD----------P---ASRERLLELLREL----AEEGRTVIIVTHDPEL 142 (157)
T ss_pred HHh--cCCCEEEEeCCCcCCC----------H---HHHHHHHHHHHHH----HHCCCEEEEEeCCHHH
Confidence 443 3589999998776542 0 1112333344433 2237899999997654
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.86 E-value=2.3e-08 Score=92.84 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.+++++..... ..+.+.+++.+++..+.
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTL-ILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLF 94 (207)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCccc
Confidence 367999999999999999999 777777777777778887754321 23345678877765444
No 273
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.86 E-value=1.1e-08 Score=97.00 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTV-VSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLF 89 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHH-HHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhh
Confidence 67999999999999999999 777778777767778887754321 23345577777665433
No 274
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2e-08 Score=96.04 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh---hhc--CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA---QRQ--GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~---~~~--~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++ .++ ..+.+++++..... ..+.+.+++.+++..+.. .++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~n 103 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTF-LRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFEN 103 (250)
T ss_pred EeCCCEEEEECCCCCCHHHH-HHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHH
Confidence 66999999999999999999 6666654 232 25677787764322 234456888887765543 355444
Q ss_pred HHHHHHHH--------hc---CCccEEEE-eccccc--CCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 LSLVDTLI--------RS---GSVDVVVV-DSVAAL--VPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 ~~~~~~l~--------~~---~~~~lvvI-Dsl~~l--~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+....... .. .-+..+-+ +.+... .+...+++ |++++...++++...
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 181 (250)
T PRK14245 104 VAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSG--GQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 43211100 00 00000000 000000 11134444 667777777766532
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+.+ +++||+++|.... +..+||.++.|+++...
T Consensus 182 ~~~l~~~l~~~~~-~~tiiivtH~~~~------------------~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 182 TAKVEELIHELKK-DYTIVIVTHNMQQ------------------AARVSDKTAFFYMGEMV 224 (250)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEE
Confidence 4444444433 7999999996543 44568888888766543
No 275
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.85 E-value=1e-08 Score=97.30 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+.+|++++|.|+||+||||| +.++.+...+..+.++++++.... ....+.+++.++...++...++.+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTL-LRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 66999999999999999999 677777766666777887765432 12234577777765555444444433
No 276
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.7e-08 Score=96.34 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh---cCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~---~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|+|+||+||||| ++++.++.. +..+.++++++.... ..+.+.+++.+++..++. .++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni 99 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTF-LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENI 99 (246)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHh
Confidence 56999999999999999999 677777653 356677888765432 234456888887765543 3555444
No 277
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.85 E-value=6.8e-09 Score=97.34 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H----HHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~----~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.+..++..+.+++++..... . .+.+.+++.+++..++...++.+.
T Consensus 28 i~~G~~~~I~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 102 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTL-LTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQN 102 (220)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHH
Confidence 66999999999999999999 777777777777778887764321 1 234567887777655443444443
No 278
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.8e-08 Score=96.38 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh--c---CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--Q---GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~--~---~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.+ + ..+.++++++.... ..+.+.+++.+++..+.. .++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~n 103 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTF-LRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDN 103 (250)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHH
Confidence 66999999999999999999 777777643 2 35777888765432 233456788887765444 455444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 104 i 104 (250)
T PRK14240 104 V 104 (250)
T ss_pred H
Confidence 3
No 279
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.84 E-value=6.8e-09 Score=97.20 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=45.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+.+.+++.+++..++
T Consensus 27 i~~G~~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTL-LKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90 (220)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccc
Confidence 56999999999999999999 777778777667778887754321 22345677877765444
No 280
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2e-08 Score=96.82 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++..+ ..+.++++++.... ..+.+.+++.+++..++ ..++.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~e 107 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTV-LRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFD 107 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHH
Confidence 367999999999999999999 6777777643 45677888765421 23345678888776554 344444
Q ss_pred HHHHH--------------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH----------------
Q 014268 185 ALSLV--------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 234 (427)
Q Consensus 185 ~~~~~--------------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------- 234 (427)
.+... ..+++..++.-.+-+.+. .+...+++ |++++...++++...
T Consensus 108 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~--~~~~~LS~--G~~qrv~laral~~~p~llllDEPtsgLD~~ 183 (261)
T PRK14263 108 NVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK--VSGLSLSG--GQQQRLCIARAIATEPEVLLLDEPCSALDPI 183 (261)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhh--CCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 43321 111111111000000000 11123443 666666666666532
Q ss_pred ----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEE
Q 014268 235 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 288 (427)
Q Consensus 235 ----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~ 288 (427)
+..+.+.+++ +.+||+++|.... +...||.+++|.
T Consensus 184 ~~~~l~~~l~~~~~-~~tii~isH~~~~------------------i~~~~d~v~~l~ 222 (261)
T PRK14263 184 ATRRVEELMVELKK-DYTIALVTHNMQQ------------------AIRVADTTAFFS 222 (261)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEe
Confidence 4444444443 6899999996543 445688888886
No 281
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.83 E-value=1.6e-08 Score=106.85 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=92.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe-CCCC-----CC----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AEHA-----LD----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is-~E~~-----~~----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.++++ ++.. .. ..+.+.+++.+++..+....++.+
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 384 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTL-SKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLD 384 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHH
Confidence 377999999999999999999 788888877666777775 4311 11 123346888888765555556655
Q ss_pred HHHHHHHH------Hh---cCCccEEEEec-----ccccCCCCccCCcccchhHHHHHHHHHHH----------------
Q 014268 185 ALSLVDTL------IR---SGSVDVVVVDS-----VAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 234 (427)
Q Consensus 185 ~~~~~~~l------~~---~~~~~lvvIDs-----l~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------- 234 (427)
.+.....+ .. ..-+..+-++. +.. .+...+++ |++|+...++++...
T Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~~LSg--Gq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 385 NLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILD-KYPDELSE--GERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhh-CChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 54321100 00 00011111111 111 11245555 777777777776643
Q ss_pred ----HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ----LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ----L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+.++.+.+ ++.+.|||++||.... +..+||.++.|+.+..
T Consensus 462 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 462 TKVDVTHSILKAREEMEQTFIIVSHDMDF------------------VLDVCDRAALMRDGKI 506 (520)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 44443333 3469999999997653 4456888888876543
No 282
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.4e-08 Score=101.13 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh----cCceEEEEeCCCCCC---HHH----HHHhccccCccc--cCCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD---PSL----AETIGVKTENLL--LAQPDC 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~----~~~~vv~is~E~~~~---~~~----~~~ig~~~~~l~--~~~~~~ 181 (427)
-|.+|++++|.|+|||||||| ++++.++.. ...+.++|+++.... ..+ .+.+++.+|+.. +....+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTL-l~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t 107 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLI-AKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER 107 (330)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence 366999999999999999999 666666654 345778888765432 122 235788887653 222233
Q ss_pred HHHHHHH-HHHHHh---------------cCCccEEEEecc---cccCCCCccCCcccchhHHHHHHHHHHH--------
Q 014268 182 GEQALSL-VDTLIR---------------SGSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMSQA-------- 234 (427)
Q Consensus 182 ~~~~~~~-~~~l~~---------------~~~~~lvvIDsl---~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------- 234 (427)
+.+.+.. +..... ..-++.+-++.. .... ..++++ |++|+...++++...
T Consensus 108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDE 184 (330)
T PRK15093 108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTE--GECQKVMIAIALANQPRLLIADE 184 (330)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHCCCCEEEEeC
Confidence 3332221 110000 000111112110 1111 235555 777777777776543
Q ss_pred ------------HHHHHHHhhc-CCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 235 ------------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 235 ------------L~~L~~~l~~-~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+..+.+.+++ .++|||++||.... +..+||.++.|+.+..+..
T Consensus 185 Pts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~------------------v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 185 PTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM------------------LSQWADKINVLYCGQTVET 240 (330)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 4444444443 69999999997653 4456788888887665443
No 283
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2e-08 Score=96.47 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++..+ ..+.+++++.... . ..+.+.+++.+++..+....++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 104 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTV-LRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD 104 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence 367999999999999999999 7777777542 3677788775431 1 234456788887765554445555
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 105 nl 106 (258)
T PRK14241 105 NV 106 (258)
T ss_pred HH
Confidence 44
No 284
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2.3e-08 Score=95.71 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++.++ ..+.++++++.... ..+.+.+++.+++..++. .++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 103 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTF-LRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHH
Confidence 366999999999999999999 6777776542 45677887765422 234556888888765554 55555
Q ss_pred HHH
Q 014268 185 ALS 187 (427)
Q Consensus 185 ~~~ 187 (427)
.+.
T Consensus 104 nl~ 106 (251)
T PRK14270 104 NVA 106 (251)
T ss_pred HHH
Confidence 443
No 285
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.83 E-value=2.4e-08 Score=95.47 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh--hhcCceEEEEeCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEH 157 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~--~~~~~~vv~is~E~ 157 (427)
-+++|++++|.|+||+||||| ++++.+. ..+..+.+++++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~G~i~~~g~~ 72 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTL-SKVIAGHPAYKILEGDILFKGES 72 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCcCcCCCceEEECCEE
Confidence 367999999999999999999 6677765 23455667777654
No 286
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.9e-08 Score=96.32 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC-----ceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-----GYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~-----~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|.+|++++|.|+||+||||| ++++.++..+. .+.++++++.... ..+.+.+++.+++..++. .++.+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 104 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTL-LRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHH
Confidence 66999999999999999999 67777776543 4677787764321 234556888888765554 355544
Q ss_pred HHHHHHHHhc-------CC----ccEEEE-eccccc--CCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 LSLVDTLIRS-------GS----VDVVVV-DSVAAL--VPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 ~~~~~~l~~~-------~~----~~lvvI-Dsl~~l--~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+......... .. .+.+-+ +.+..+ .....+++ |++++...++++...
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (251)
T PRK14249 105 VAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG--GQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182 (251)
T ss_pred HhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4322111000 00 000000 001111 11123443 666666666666532
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.++ .++|||+++|.... +...||.++.|+++..
T Consensus 183 ~~~l~~~l~~~~-~~~tilivsh~~~~------------------~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 183 TMRIEELMQELK-QNYTIAIVTHNMQQ------------------AARASDWTGFLLTGDL 224 (251)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH------------------HHhhCCEEEEEeCCeE
Confidence 444444443 47999999996553 4456788888876543
No 287
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1e-08 Score=108.14 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=91.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCCCC----HHHHHHhccccCcc---ccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~~~----~~~~~~ig~~~~~l---~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+|||||||| ++++.++.+ +..+.++++++.... ..+...+++.+++. .+....++.+.+
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTEL-VQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHH-HHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 478999999999999999999 777777766 356777887654321 12234578887764 233334444433
Q ss_pred HHHH--HHH-----h--------cCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH----------------
Q 014268 187 SLVD--TLI-----R--------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 234 (427)
Q Consensus 187 ~~~~--~l~-----~--------~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------- 234 (427)
.... .+. . ..-+..+-++ .... .+...+++ |++|+...++++...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSg--G~kqrv~lA~al~~~p~lllLDEPt~~LD~~ 439 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE-LAIARLSG--GNQQKAVLAKCLLLNPKILILDEPTRGIDVG 439 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc-cccccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHh
Confidence 2210 000 0 0000111111 0111 11245555 777788877777643
Q ss_pred ----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 ----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+...+++.|.|||++||.... +..+||.++.|+.+.
T Consensus 440 ~~~~l~~~l~~l~~~g~tvi~~sHd~~~------------------~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 440 AKYEIYKLINQLVQQGVAIIVISSELPE------------------VLGLSDRVLVMHEGK 482 (506)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHH------------------HHHhCCEEEEEECCE
Confidence 555555555569999999997654 445688888887554
No 288
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.83 E-value=1.7e-08 Score=94.90 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC----CCC--C-HH----HHHHhccccCccccCCCCCHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HAL--D-PS----LAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E----~~~--~-~~----~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++.. ... . .. +.+.+++.+++..+....++.+
T Consensus 31 i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTL-LKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 66999999999999999999 77778777666677777632 111 1 11 1245788887765555445544
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 110 ~l 111 (224)
T TIGR02324 110 VV 111 (224)
T ss_pred HH
Confidence 43
No 289
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=8.2e-09 Score=98.94 Aligned_cols=154 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++..+ ..+.++++++... . ..+.+.+++.+++..++. .++.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 107 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTF-LRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDN 107 (254)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHH
Confidence 66999999999999999999 7777777654 3567778775432 1 234456888887755443 455554
Q ss_pred HHHHHHHHh-----------cCCccEEEE-ecccc--cCCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 LSLVDTLIR-----------SGSVDVVVV-DSVAA--LVPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 ~~~~~~l~~-----------~~~~~lvvI-Dsl~~--l~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+........ ..-++.+-+ +.+.. -.....+++ |++++...++++...
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG--GQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 432211000 000000000 00000 001234444 666666666666532
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+++ ++|||+++|.... +...||.++.|..+..
T Consensus 186 ~~~l~~~l~~~~~-~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 186 TGKIEELIINLKE-SYTIIIVTHNMQQ------------------AGRISDRTAFFLNGCI 227 (254)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 4444444443 7899999996543 3446788888876543
No 290
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.82 E-value=1.8e-08 Score=106.37 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H--HHHHHhccccCcc---ccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENL---LLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~--~~~~~ig~~~~~l---~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+|||||||| ++++.++.++..+.+++++..... . .+...+++.+++. .++...++.+.+.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTEL-AETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 467999999999999999999 777778777667778887654322 1 1223577777653 1233333333221
Q ss_pred H------------------HHHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH--------------
Q 014268 188 L------------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 234 (427)
Q Consensus 188 ~------------------~~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------- 234 (427)
. +..++. .+-+. .... .+...+++ |++++...++++...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~-~~~~~LSg--G~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRR-----ALNIKFNHAE-QAARTLSG--GNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHH-----HcCCCCCCcc-CccccCCc--HHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 1 111111 11111 1111 11245555 777777777777643
Q ss_pred ------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 ------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+++.+.+||++||.... +...||.+++|+.+.
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tiIivsHd~~~------------------i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 436 VSARNDIYQLIRSIAAQNVAVLFISSDLEE------------------IEQMADRVLVMHQGE 480 (510)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCE
Confidence 444555554569999999997654 455688888887554
No 291
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.3e-08 Score=101.32 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCCCCC---HHHH----HHhccccCccc--cCCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALD---PSLA----ETIGVKTENLL--LAQPDC 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~~~~---~~~~----~~ig~~~~~l~--~~~~~~ 181 (427)
-|++|++++|.|+|||||||| ++++.++..+ ..+.++++++.... ..+. +.+++.+++.. +....+
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL-~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 107 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVS-SLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (326)
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence 367999999999999999999 5555555542 45667888765432 1222 24788888753 222233
Q ss_pred HH-HHHHHHHHHH-------h---cCCccEEEEec---ccccCCCCccCCcccchhHHHHHHHHHHH-------------
Q 014268 182 GE-QALSLVDTLI-------R---SGSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA------------- 234 (427)
Q Consensus 182 ~~-~~~~~~~~l~-------~---~~~~~lvvIDs---l~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------- 234 (427)
+. ++.+.+.... . ..-++.+-++. ..... ..++++ |++|+...+++++..
T Consensus 108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDEPts~L 184 (326)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADEPTTAL 184 (326)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 32 2222111100 0 00011111211 11112 245565 777788877777643
Q ss_pred -------HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 235 -------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 235 -------L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+..+.+.+ ++.+.+||++||.... +..+||.++.|+.+.....
T Consensus 185 D~~~~~~il~lL~~l~~~~g~til~iTHdl~~------------------~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 185 DVTIQAQIIELLLELQQKENMALVLITHDLAL------------------VAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 33433444 3469999999996653 3456788888887665443
No 292
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.82 E-value=2.4e-08 Score=95.24 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=41.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCC--H-HHH-HHhccccCccc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD--P-SLA-ETIGVKTENLL 175 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~--~-~~~-~~ig~~~~~l~ 175 (427)
-+++|++++|.|+||+||||| ++++.+.. .+..+.++++++.... . ... ..+++.+++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch
Confidence 467999999999999999999 67777763 4566778888765432 1 122 34666665543
No 293
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2e-08 Score=97.03 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.. +..+.++++++.... ..+.+.+++.+++..++.. ++.+.
T Consensus 44 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 121 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTF-LRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNN 121 (268)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHH
Confidence 66999999999999999999 677776542 345677787654321 1334567888877654432 44443
No 294
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.4e-08 Score=106.81 Aligned_cols=151 Identities=15% Similarity=0.232 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccc---cCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL---LAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~---~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+|||||||| ++++.+..++..+.++++++.... ......+++.+++.. ++...++.+.+.
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTL-lk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 353 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSEL-MKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHH-HHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence 367999999999999999999 777777766666777887654321 122345677777641 333344443322
Q ss_pred H---------------------HHHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH-----------
Q 014268 188 L---------------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------- 234 (427)
Q Consensus 188 ~---------------------~~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------- 234 (427)
. +..++ ..+-++ ... -.+...+++ |++++...++++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~l~~~~~-~~~~~~LSg--Gq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 354 ISARRHHLRAGCLINNRWEAENADRFI-----RSLNIKTPSR-EQLIMNLSG--GNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred cccchhhcccccccChHHHHHHHHHHH-----HhcCcccCCc-cCccccCCH--HHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 1 11111 111121 111 111245555 777777777776532
Q ss_pred ---------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ---------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ---------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+...+.+.|.|||++||.... +..+||.++.++++..
T Consensus 426 ~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~------------------~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE------------------VLGVADRIVVMREGRI 474 (501)
T ss_pred CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHhhCCEEEEEECCEE
Confidence 555555556679999999997664 4456788888876543
No 295
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.3e-08 Score=98.75 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=41.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTEN 173 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~ 173 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++..........+++.+++
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~ 86 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTL-FKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQS 86 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccc
Confidence 366999999999999999999 7777887777677778877543211111235666554
No 296
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=7.1e-09 Score=97.69 Aligned_cols=61 Identities=31% Similarity=0.455 Sum_probs=44.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcccc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL 176 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~ 176 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.+++++..... ..+.+.+++.+++..+
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 88 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTL-INLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFL 88 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchh
Confidence 366999999999999999999 777777777777778887754321 2344557777766443
No 297
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.81 E-value=1.9e-08 Score=105.91 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=91.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCcc---ccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l---~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|+|||||||| ++++.+..++..+.++++++.... ..+.+.+++.+++. .+....++.+.+.
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTL-l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTEL-MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 367999999999999999999 777778777777788887754321 12334588888774 2333345544332
Q ss_pred HH---------------------HHHHhcCCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH-----------
Q 014268 188 LV---------------------DTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------- 234 (427)
Q Consensus 188 ~~---------------------~~l~~~~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------- 234 (427)
.. ..++ ..+-+. .... .+...+++ |++++...++++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~l~~~~~~-~~~~~LSg--Gekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFI-----RLFNIKTPSME-QAIGLLSG--GNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHH-----HhcCCCCCCcc-CchhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 21 1111 111111 1111 11234555 777777777776643
Q ss_pred ---------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 ---------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 ---------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+.+.|.+||++||.... +..+||.++.|..+.
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~------------------~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE------------------VLGMSDRILVMHEGR 472 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH------------------HHhhCCEEEEEECCE
Confidence 444455554559999999996653 445688888887543
No 298
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.5e-08 Score=96.77 Aligned_cols=149 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh--c---CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--Q---GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~--~---~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.. + ..+.++++++.... ..+.+.+++.+++..++.. ++.+.
T Consensus 43 i~~Ge~~~IiG~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~n 120 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTL-LRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYEN 120 (274)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHH
Confidence 56999999999999999999 667776643 1 35667787765321 2344567888887654432 44443
Q ss_pred HHHHHH--------------HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 LSLVDT--------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 ~~~~~~--------------l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+..... .+...+...-+-+.+. .+...+++ |++++...++++...
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~--~~~~~LSg--Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~ 196 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK--EKGTALSG--GQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhc--CCcccCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 322110 0000000000001000 11233444 667777777776543
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEe
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
+..+...+++ +++||+++|.... +..+||.++.|++
T Consensus 197 ~~~l~~~L~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~ 235 (274)
T PRK14265 197 TRQVEELCLELKE-QYTIIMVTHNMQQ------------------ASRVADWTAFFNT 235 (274)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEec
Confidence 4444444444 6899999996543 4556899988873
No 299
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.81 E-value=2.1e-08 Score=109.59 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=94.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCC-----------CC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP-----------DC 181 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~-----------~~ 181 (427)
+++|+.++|.|++||||||| ++++.++..+..+.+++++....+ ..+.+.+++.+|+..++.. .+
T Consensus 476 i~~Ge~vaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~ 554 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTL-LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLT 554 (686)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCC
Confidence 78999999999999999999 788888877778889999876543 4677789999887765432 22
Q ss_pred HHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----------------HHHHH
Q 014268 182 GEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLS 239 (427)
Q Consensus 182 ~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-----------------L~~L~ 239 (427)
.+++.+.++. .+.....+ .|..-.-. ...+++ |++|+...+|++.+. -+.+.
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G---~dt~ige~-G~~LSG--GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~ 628 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMG---MHTVISEG-GGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhcccc---ccccccCC-CCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2333322221 11110000 11110000 123444 777777777776543 23333
Q ss_pred HHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 240 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 240 ~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+.+++.++|+|+++|..+. +. .||.++.|.++...
T Consensus 629 ~~L~~~~~T~IiItHr~~~------------------i~-~~D~Iivl~~G~iv 663 (686)
T TIGR03797 629 ESLERLKVTRIVIAHRLST------------------IR-NADRIYVLDAGRVV 663 (686)
T ss_pred HHHHHhCCeEEEEecChHH------------------HH-cCCEEEEEECCEEE
Confidence 3344457899999995432 32 38999998765543
No 300
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.3e-08 Score=95.56 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=48.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.++..+ ..+.++++++.... ..+.+.+++.+++..++. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 102 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTL-LRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYD 102 (250)
T ss_pred eecCCCEEEEECCCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHH
Confidence 466999999999999999999 7777776542 45778888764322 123456788877655444 45544
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 103 ~l 104 (250)
T PRK14262 103 NV 104 (250)
T ss_pred HH
Confidence 43
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.81 E-value=5.4e-08 Score=92.40 Aligned_cols=145 Identities=16% Similarity=0.251 Sum_probs=94.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----------HHHHHHhccccCccc-cCCCCCHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------PSLAETIGVKTENLL-LAQPDCGE 183 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----------~~~~~~ig~~~~~l~-~~~~~~~~ 183 (427)
-+.+|++.+|+|++||||||++ .++..+..+..+.++|.+..... ..+...+|...+.+. +.+..+..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlg-r~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLG-RLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHH-HHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 4679999999999999999994 56666767778889998775321 123344564433332 22333333
Q ss_pred --HHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccc
Q 014268 184 --QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 261 (427)
Q Consensus 184 --~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~ 261 (427)
+-+.+++.+ ..+++++|.|....+.. ...+..+...|..|.+. .|.+.++++|....
T Consensus 114 QrQRi~IARAL--al~P~liV~DEpvSaLD-------------vSiqaqIlnLL~dlq~~---~~lt~lFIsHDL~v--- 172 (268)
T COG4608 114 QRQRIGIARAL--ALNPKLIVADEPVSALD-------------VSVQAQILNLLKDLQEE---LGLTYLFISHDLSV--- 172 (268)
T ss_pred hhhhHHHHHHH--hhCCcEEEecCchhhcc-------------hhHHHHHHHHHHHHHHH---hCCeEEEEEEEHHh---
Confidence 334445554 35789999999887762 11222344566666655 69999999997653
Q ss_pred cccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 262 FGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 262 ~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
..+.+|.+..||.+.....+
T Consensus 173 ---------------v~~isdri~VMy~G~iVE~g 192 (268)
T COG4608 173 ---------------VRYISDRIAVMYLGKIVEIG 192 (268)
T ss_pred ---------------hhhhcccEEEEecCceeEec
Confidence 55667888888877655443
No 302
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.80 E-value=2.8e-08 Score=93.13 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=45.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-|++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++..+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~ 90 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSL-LLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF 90 (221)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc
Confidence 367999999999999999999 777777776666777887764322 23455678877765443
No 303
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=2.3e-08 Score=95.64 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hc---CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQ---GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~--~~---~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++. .+ ..+.++++++.... ..+.+.+++.+++..++. .++.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 105 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTL-LRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYEN 105 (252)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHH
Confidence 66999999999999999999 67776653 23 25667787764321 234456888888765554 455554
Q ss_pred HHHHHHHHhc-------CC----ccEEEEe-ccccc--CCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 LSLVDTLIRS-------GS----VDVVVVD-SVAAL--VPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 ~~~~~~l~~~-------~~----~~lvvID-sl~~l--~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
+......... .. .+.+-+. .+... .....+++ |++++...++++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (252)
T PRK14239 106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG--GQQQRVCIARVLATSPKIILLDEPTSALDPIS 183 (252)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 4322110000 00 0000000 00000 11133444 666677777766532
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+.+ +.|||+++|.... +...||.++.|.++..
T Consensus 184 ~~~l~~~l~~~~~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 184 AGKIEETLLGLKD-DYTMLLVTRSMQQ------------------ASRISDRTGFFLDGDL 225 (252)
T ss_pred HHHHHHHHHHHhh-CCeEEEEECCHHH------------------HHHhCCEEEEEECCEE
Confidence 4444444433 6899999996543 4456888888876543
No 304
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.80 E-value=2.3e-08 Score=105.20 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=89.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCC----HHHHHHhccccCcc---ccCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDCGEQALS 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~----~~~~~~ig~~~~~l---~~~~~~~~~~~~~ 187 (427)
+.+|++++|.|+|||||||| ++++.++.++ ..+.++++++.... ..+.+.+++.+++. .+....++.+.+.
T Consensus 283 i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTEL-VQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHH-HHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 67999999999999999999 7777777763 56777887754321 22345578887774 2333333333322
Q ss_pred H--------------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-------------
Q 014268 188 L--------------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------- 234 (427)
Q Consensus 188 ~--------------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------- 234 (427)
. +..++...+ +.....-.+...+++ |++++...++++...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~L 434 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLK-----VKTASPFLPIGRLSG--GNQQKAVLAKMLLTNPRVLILDEPTRGV 434 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcC-----ccCCCccCccccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence 1 111111111 110000111234555 777777777777643
Q ss_pred -------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 235 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 235 -------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+..+...+++.|.|||++||.... +..+||.++.|..+
T Consensus 435 D~~~~~~l~~~l~~l~~~g~tviivsHd~~~------------------~~~~~d~v~~l~~G 479 (500)
T TIGR02633 435 DVGAKYEIYKLINQLAQEGVAIIVVSSELAE------------------VLGLSDRVLVIGEG 479 (500)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHHhCCEEEEEECC
Confidence 445555555569999999997653 44568888887644
No 305
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=2.6e-08 Score=97.29 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=48.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-|.+|++++|.|+||+||||| ++++.++.. +..+.++++++.... ..+.+.+++.+++..++.. ++.+
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 138 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTF-LRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFD 138 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHH
Confidence 367999999999999999999 777777542 256677787754321 2345568888877655432 5544
Q ss_pred HHH
Q 014268 185 ALS 187 (427)
Q Consensus 185 ~~~ 187 (427)
.+.
T Consensus 139 nl~ 141 (286)
T PRK14275 139 NIA 141 (286)
T ss_pred HHH
Confidence 443
No 306
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=2.7e-08 Score=96.26 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=47.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-|++|++++|.|+|||||||| ++++.++.. +..+.++++++... . ..+.+.+++.+++..++. .++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 112 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTV-LRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYE 112 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHH
Confidence 367999999999999999999 777777654 34566777765432 1 234456788887765443 25544
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 113 nl 114 (269)
T PRK14259 113 NI 114 (269)
T ss_pred HH
Confidence 44
No 307
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.79 E-value=2.4e-08 Score=95.81 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCCCCCHH-HHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALDPS-LAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~~~~~~-~~~~ig~~~~~l 174 (427)
+++|++++|.|+||+||||| ++++.++.++ ..+.++++++...... ..+.+++.+++.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLT-CAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88 (254)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCC
Confidence 66999999999999999999 7777777665 5667788776432221 224577777764
No 308
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.79 E-value=3.6e-08 Score=106.73 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=51.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|+.++|.|++||||||| ++++.++..+..+.+++|+-+..+ ..+.+.+|+++++..++
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL-~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf 559 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTL-LKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence 489999999999999999999 788888888888889998876544 56788899998866543
No 309
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.4e-08 Score=94.53 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=45.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+.+|++++|.|+||+||||| +.++.++.. +..+.++++++.... ..+.+.+++.+++..++.. ++.+.
T Consensus 28 i~~Ge~~~I~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~n 105 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTF-LRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDN 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHH
Confidence 56999999999999999999 666666643 235667777653211 1234567888877544432 44443
No 310
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.2e-08 Score=96.17 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-|++|++++|.|+||+||||| ++++.++.++ ..+-++++++.... ..+...+++.+++..++. .++.+.
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 120 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTF-LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDN 120 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHH
Confidence 366999999999999999999 6666666553 45677787754322 234556788887765444 455444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 121 i 121 (276)
T PRK14271 121 V 121 (276)
T ss_pred H
Confidence 3
No 311
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.3e-08 Score=94.55 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|++|++++|.|+||+||||| ++++.++.. +..+.++++++.... ..+.+.+++.+++..++. .++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 104 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTF-LRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHH
Confidence 66999999999999999999 677777654 245677787764321 123455788777755443 455554
Q ss_pred HH
Q 014268 186 LS 187 (427)
Q Consensus 186 ~~ 187 (427)
+.
T Consensus 105 l~ 106 (251)
T PRK14251 105 VA 106 (251)
T ss_pred HH
Confidence 43
No 312
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.7e-08 Score=94.09 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCC---C-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL---D-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~---~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+.+|++++|.|+||+||||| ++++.+..++ ..+.++++++... . ..+.+.+++.+++..++. .++.+.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l 103 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTL-LRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENV 103 (249)
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHH
Confidence 66999999999999999999 6666666553 3567788775432 1 234556888887765543 4554443
Q ss_pred HHHHHHHh--------c---CCccEEEE-eccccc--CCCCccCCcccchhHHHHHHHHHHH------------------
Q 014268 187 SLVDTLIR--------S---GSVDVVVV-DSVAAL--VPKGELDGEMGDAHMAMQARLMSQA------------------ 234 (427)
Q Consensus 187 ~~~~~l~~--------~---~~~~lvvI-Dsl~~l--~~~~~~~~~~g~~~~~~~ar~ls~~------------------ 234 (427)
........ . .-...+-+ +.+... .+...+++ |++++...++++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 181 (249)
T PRK14253 104 AYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSG--GQQQRLCIARTIAMEPDVILMDEPTSALDPIAT 181 (249)
T ss_pred HhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 32111000 0 00000000 000000 01123444 666666666666532
Q ss_pred --HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 --L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+++ +.|||+++|.... +..+||.++.|.++..
T Consensus 182 ~~l~~~l~~~~~-~~tii~~sh~~~~------------------~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 182 HKIEELMEELKK-NYTIVIVTHSMQQ------------------ARRISDRTAFFLMGEL 222 (249)
T ss_pred HHHHHHHHHHhc-CCeEEEEecCHHH------------------HHHhCCEEEEEECCEE
Confidence 4444455544 5899999996543 4556788888876543
No 313
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.5e-08 Score=94.41 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=48.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC-----ceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-----GYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~-----~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+.+|++++|.|+||+||||| ++++.+...+. .+.++++++.... ..+.+.+++.+++..++...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 104 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTF-LRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence 366999999999999999999 77777765432 5677887764321 233455788887765555445554
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 105 nl 106 (252)
T PRK14272 105 NV 106 (252)
T ss_pred HH
Confidence 44
No 314
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=5.3e-08 Score=85.81 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=51.6
Q ss_pred cCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccC
Q 014268 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTE 172 (427)
Q Consensus 102 TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~ 172 (427)
++-+-||.+-- -+.+|+.+.|.||+||||||| +.+++.+..+..+.++|.+|.... +.+..++.|..+
T Consensus 14 ~~a~il~~isl--~v~~Ge~iaitGPSG~GKStl-lk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 14 GDAKILNNISL--SVRAGEFIAITGPSGCGKSTL-LKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred CCCeeecceee--eecCCceEEEeCCCCccHHHH-HHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 44455665543 588999999999999999999 788888888889999999987554 445555555433
No 315
>PLN03211 ABC transporter G-25; Provisional
Probab=98.79 E-value=2.7e-08 Score=107.78 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=98.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC--ceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~--~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.||||+||||| ++++.+..+++ .+.++++++... ....+.+++.+++..+....++.+.+.....+
T Consensus 90 ~i~~Ge~~aI~GpnGaGKSTL-L~iLaG~~~~~~~sG~I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~ 167 (659)
T PLN03211 90 MASPGEILAVLGPSGSGKSTL-LNALAGRIQGNNFTGTILANNRKPT-KQILKRTGFVTQDDILYPHLTVRETLVFCSLL 167 (659)
T ss_pred EEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCceeEEEEECCEECc-hhhccceEEECcccccCCcCCHHHHHHHHHHh
Confidence 688999999999999999999 77777776543 577888876542 23345688888877666666777666543221
Q ss_pred HhcCC-------------ccEEEEecccc----cCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 193 IRSGS-------------VDVVVVDSVAA----LVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 193 ~~~~~-------------~~lvvIDsl~~----l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
..... ++.+-+..... -.....+++ |++++...++++... +
T Consensus 168 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSg--GerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l 245 (659)
T PLN03211 168 RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRL 245 (659)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcCh--hhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHH
Confidence 10000 00000111100 001124555 778888888777643 4
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
.++.+.+.+.|.|||+++|..+. .+...+|.++.|.++.....+
T Consensus 246 ~~~L~~l~~~g~TvI~~sH~~~~-----------------~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 246 VLTLGSLAQKGKTIVTSMHQPSS-----------------RVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred HHHHHHHHhCCCEEEEEecCCCH-----------------HHHHhhceEEEecCCcEEEEC
Confidence 44444444469999999996541 144568888888776544433
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.78 E-value=5.6e-08 Score=85.17 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHH--HHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ--ALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~--~~~~~~~l 192 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++.. ..+++.++ .+..+ -+.+++.+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~~~--------~~i~~~~~-------lS~G~~~rv~laral 85 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTL-LKLIAGELEPDEGIVTWGST--------VKIGYFEQ-------LSGGEKMRLALAKLL 85 (144)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCceEEEECCe--------EEEEEEcc-------CCHHHHHHHHHHHHH
Confidence 366999999999999999999 77777777777777888763 23444443 33322 23445555
Q ss_pred HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
. .+++++++|....-.. . .....+...++ . .+.+||+++|....
T Consensus 86 ~--~~p~illlDEP~~~LD----------~---~~~~~l~~~l~----~---~~~til~~th~~~~ 129 (144)
T cd03221 86 L--ENPNLLLLDEPTNHLD----------L---ESIEALEEALK----E---YPGTVILVSHDRYF 129 (144)
T ss_pred h--cCCCEEEEeCCccCCC----------H---HHHHHHHHHHH----H---cCCEEEEEECCHHH
Confidence 3 4689999998766542 0 11122222232 2 25799999996543
No 317
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.78 E-value=3.4e-08 Score=108.30 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=95.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCC------------C
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 180 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~------------~ 180 (427)
+++|+.++|.|++||||||| ++++.++..+..+.+++++....+ ..+.+.+++.+|+..++.. .
T Consensus 502 i~~Ge~vaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~ 580 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTI-AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI 580 (710)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCC
Confidence 78999999999999999999 788888877788889998875433 4577889999887654432 1
Q ss_pred CHHHHHHHHHH-----HHhcC--CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----------------HH
Q 014268 181 CGEQALSLVDT-----LIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LR 236 (427)
Q Consensus 181 ~~~~~~~~~~~-----l~~~~--~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-----------------L~ 236 (427)
+.+++.+.++. .+... +.+-.+ .-. ...+++ |++|+...+|++.+. -+
T Consensus 581 ~~~~i~~al~~~~l~~~i~~lp~gl~t~i-----~e~-G~~LSG--GQrQRiaLARall~~p~iliLDEptS~LD~~te~ 652 (710)
T TIGR03796 581 PDADLVRACKDAAIHDVITSRPGGYDAEL-----AEG-GANLSG--GQRQRLEIARALVRNPSILILDEATSALDPETEK 652 (710)
T ss_pred CHHHHHHHHHHhCCHHHHHhCcCccccee-----ccC-CCCCCH--HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence 22333222221 11111 111111 101 133555 778888888877653 22
Q ss_pred HHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
.+...+++.++|+|+++|-... +. .||.++.|..+.....
T Consensus 653 ~i~~~l~~~~~T~IiitHrl~~------------------i~-~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 653 IIDDNLRRRGCTCIIVAHRLST------------------IR-DCDEIIVLERGKVVQR 692 (710)
T ss_pred HHHHHHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEeCCEEEEe
Confidence 3333334469999999995432 32 3899999977654433
No 318
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.78 E-value=2.9e-08 Score=106.57 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=47.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
+++|+.++|.|++||||||| ++++.+.. +..+.+++++....+ ..+.+.+++++|+..++.
T Consensus 373 i~~G~~vaIvG~SGsGKSTL-~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~ 436 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSL-LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436 (588)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCC
Confidence 68999999999999999999 66666666 567788888765433 467778999988765543
No 319
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.78 E-value=3.4e-08 Score=100.26 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=93.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCC------------
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPD------------ 180 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~------------ 180 (427)
+++|+.+.|.||+||||||| ..++.++.++..+.+.+|+-+... ..+-+.+||-+|++.+++-+
T Consensus 359 l~~G~~lgIIGPSgSGKSTL-aR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTL-ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred ecCCceEEEECCCCccHHHH-HHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 57999999999999999999 566777777788889998765433 46778899999988765432
Q ss_pred CHHHHHHHHH-----HHH-------------------------------hcCCccEEEEecccccCCCCccCCcccchhH
Q 014268 181 CGEQALSLVD-----TLI-------------------------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHM 224 (427)
Q Consensus 181 ~~~~~~~~~~-----~l~-------------------------------~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~ 224 (427)
+.+.+++..+ .++ -.+++.+||+|...+-.. . .|+
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD-----~-~GE--- 508 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLD-----S-EGE--- 508 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcc-----h-hHH---
Confidence 2222222211 111 135678888887655441 1 122
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 225 AMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 225 ~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.++..++.. +|+.|+++|+++| +| ++-..+|.++.|+.+..
T Consensus 509 ----~AL~~Ai~~----~k~rG~~vvviaH-----------RP--------s~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 509 ----AALAAAILA----AKARGGTVVVIAH-----------RP--------SALASVDKILVLQDGRI 549 (580)
T ss_pred ----HHHHHHHHH----HHHcCCEEEEEec-----------CH--------HHHhhcceeeeecCChH
Confidence 234444444 4556999999999 44 35566899999987653
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.78 E-value=2.6e-08 Score=106.22 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++
T Consensus 365 i~~G~~~aivG~sGsGKSTl-~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 428 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTL-AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428 (555)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhh
Confidence 67999999999999999999 777788777778888898876544 35667788888776544
No 321
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.78 E-value=1.7e-08 Score=94.42 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++++.... ..+.+.+++.+++..++ +.++.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~n 98 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSL-LLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEEN 98 (218)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHH
Confidence 66999999999999999999 788888777777778887764321 11234577777766544 3344443
No 322
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.78 E-value=3.4e-08 Score=95.89 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=45.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
|++|++++|.|++|+||||| ++++.++.. ..+.++|++..... ..+.+.+++.+++..++
T Consensus 27 I~~Ge~~~IvG~nGsGKSTL-l~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf 89 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTL-LSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF 89 (275)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccc
Confidence 66999999999999999999 666677665 56778888865432 34556788887776544
No 323
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.78 E-value=2.5e-08 Score=93.85 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=45.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcccc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL 176 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~ 176 (427)
-+++|++++|.|+||+||||| ++++.++..+..+.++++++.... ..+.+.+++.+++..+
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 99 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTV-VALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVL 99 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHH
Confidence 367999999999999999999 777777777667778888764321 2334557777766543
No 324
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=4.2e-08 Score=94.37 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.++ ..+.++++++.... ..+...+++.+++..++. .++.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 107 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTF-IKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYEN 107 (259)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHH
Confidence 66999999999999999999 6777776542 25667777754321 234456888888765554 455554
Q ss_pred HHHHHH----------------HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 186 LSLVDT----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 186 ~~~~~~----------------l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
+..... ++...++.- .+..... .....+++ |++++...++++...
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~l~~~~~-~~~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 108 VAYGVRISAKLPQADLDEIVESALKGAALWQ-EVKDKLN-KSALGLSG--GQQQRLCIARALAIKPKVLLMDEPCSALDP 183 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhhHhc-CCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 432110 000001000 0000000 11134444 667777777776532
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEe
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
+..+...+++ ++|||+++|.... +..+||.+++|+.
T Consensus 184 ~~~~~l~~~l~~~~~-~~tiii~tH~~~~------------------i~~~~d~i~~l~~ 224 (259)
T PRK14260 184 IATMKVEELIHSLRS-ELTIAIVTHNMQQ------------------ATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCeEEEEec
Confidence 4444444444 5899999996543 4556888888863
No 325
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=3.5e-08 Score=95.69 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-+++|++++|.|+||+||||| ++++.+... +..+.++++++.... ..+.+.+++.+++..++.. ++.+
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTL-l~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 124 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTL-LRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYE 124 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHH
Confidence 367999999999999999999 666666654 245667777654321 2334567888776554443 5544
Q ss_pred HH
Q 014268 185 AL 186 (427)
Q Consensus 185 ~~ 186 (427)
.+
T Consensus 125 nl 126 (272)
T PRK14236 125 NV 126 (272)
T ss_pred HH
Confidence 44
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.77 E-value=1.3e-08 Score=120.12 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=101.2
Q ss_pred hhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHH
Q 014268 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGE 183 (427)
Q Consensus 106 ~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~ 183 (427)
.|+.+-= ++++|++++|.|+||+||||| ++++.+...+..+.+++.+..... ....+.+|+.++...+....++.
T Consensus 1954 aL~~ISf--~I~~GEi~gLLG~NGAGKTTL-lkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1954 AVDRLCV--GVRPGECFGLLGVNGAGKTTT-FKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred EEEeeEE--EEcCCcEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence 3444433 688999999999999999999 888888888888888998765432 23445689988876666666666
Q ss_pred HHHHHHHHHHh--cCC--------ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-------------------
Q 014268 184 QALSLVDTLIR--SGS--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 234 (427)
Q Consensus 184 ~~~~~~~~l~~--~~~--------~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------- 234 (427)
+.+.....+.. ... +..+-++...... ...+++ |++++...++++...
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~ 2107 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 66543221100 000 0000011111111 123333 455555555544321
Q ss_pred -HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 -L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+.++.+.+++.|++||+++|..+. ++..||.++.|.++.....+
T Consensus 2108 ~l~~lL~~l~~~g~TIILtTH~mee------------------~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2108 MLWNTIVSIIREGRAVVLTSHSMEE------------------CEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 444444444459999999997765 45568888888876654444
No 327
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=3.2e-08 Score=95.89 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=47.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|++|++++|.|+||+||||| ++++.++.. +..+.++++++... . ..+.+.+++.+++..++.. ++.+.
T Consensus 47 i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 124 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTY-IKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDN 124 (271)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHH
Confidence 66999999999999999999 666666654 35566777765432 1 2345568888877655432 54444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 125 i 125 (271)
T PRK14238 125 V 125 (271)
T ss_pred H
Confidence 3
No 328
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=3.4e-08 Score=96.47 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=48.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|++|++++|.|+||+||||| ++++.++.. +..+.++++++... . ..+.+.+++.+++..++.. ++.+.
T Consensus 62 i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~en 139 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTF-LRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDN 139 (285)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHH
Confidence 66999999999999999999 777777754 35677788776432 1 2345567888877654443 55554
Q ss_pred HH
Q 014268 186 LS 187 (427)
Q Consensus 186 ~~ 187 (427)
+.
T Consensus 140 l~ 141 (285)
T PRK14254 140 VA 141 (285)
T ss_pred HH
Confidence 43
No 329
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.77 E-value=3e-08 Score=106.25 Aligned_cols=61 Identities=23% Similarity=0.414 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|.|++|+||||| ++++.++..+..+.+++++....+ ..+.+.+++.+|+..++
T Consensus 366 i~~G~~~aIvG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf 429 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF 429 (582)
T ss_pred eCCCCEEEEECCCCCCHHHH-HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee
Confidence 68999999999999999999 777788877777888998865433 45677889988876544
No 330
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.77 E-value=3e-08 Score=95.28 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC-----CCC--H-H----HHHHhccccCcc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-----ALD--P-S----LAETIGVKTENL 174 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~-----~~~--~-~----~~~~ig~~~~~l 174 (427)
+.+|++++|.|+||+||||| ++++.+..++..+.++++++. ... . . +.+.+++.+++.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTL-LNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred EeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 66999999999999999999 777777777777778888765 322 1 1 133478877764
No 331
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.77 E-value=1.4e-07 Score=85.51 Aligned_cols=134 Identities=15% Similarity=0.099 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC-C---------HHHHHHhccccCcc-ccCCCCCH--
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D---------PSLAETIGVKTENL-LLAQPDCG-- 182 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~-~---------~~~~~~ig~~~~~l-~~~~~~~~-- 182 (427)
+++|++++|.||||+||||| ++++.. .. +.+.+...... . ......+++....+ ......+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTL-l~~il~---~~-G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTL-VNEGLY---AS-GKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhh---cC-CcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 66999999999999999999 555532 11 22223322110 0 12334444431101 01111222
Q ss_pred HHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccccc
Q 014268 183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 262 (427)
Q Consensus 183 ~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~ 262 (427)
.+-+.+++.+...+.++++++|....-.. . ...+.+.+.++.+ ++.+.+||+++|....
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD---------~----~~~~~l~~~l~~~----~~~g~tvIivSH~~~~---- 151 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLH---------Q----QDINQLLEVIKGL----IDLGNTVILIEHNLDV---- 151 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCC---------H----HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH----
Confidence 23345556665544489999998776552 0 1123333444444 3359999999996542
Q ss_pred ccCCCeeeccCCceeeeecceEEEEEec
Q 014268 263 GFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 263 ~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+. .||.++.|.++
T Consensus 152 --------------~~-~~d~i~~l~~g 164 (176)
T cd03238 152 --------------LS-SADWIIDFGPG 164 (176)
T ss_pred --------------HH-hCCEEEEECCC
Confidence 22 37888887653
No 332
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.76 E-value=1.7e-08 Score=93.39 Aligned_cols=40 Identities=33% Similarity=0.495 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.+++++
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTL-l~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSL-LSALLGELEKLSGSVSVPG 66 (204)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCcCCCCCCeEEEcC
Confidence 366999999999999999999 7777777666666566654
No 333
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.76 E-value=4.9e-08 Score=94.41 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.+... +..+.+++++..... ..+.+.+++.+++..++. .++.+.
T Consensus 43 i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 120 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTY-LRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYEN 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHH
Confidence 66999999999999999999 667777654 346677787764321 233456788887755443 355544
Q ss_pred HHHHHH----------------HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------
Q 014268 186 LSLVDT----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 234 (427)
Q Consensus 186 ~~~~~~----------------l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------- 234 (427)
+..... ++...++.- .++.... .+...+++ |++++...++++...
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~i~~~~~-~~~~~LS~--G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 121 ITFALERAGVKDKKVLDEIVETSLKQAALWD-QVKDDLH-KSALTLSG--GQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-hhhhhhc-CCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 432111 011111100 0011111 11234444 666666667666532
Q ss_pred -----HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 -----L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+...+++ +.+||+++|.... +..+||.++.|..+.
T Consensus 197 ~~~~~l~~~l~~~~~-~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~ 239 (267)
T PRK14237 197 ISTMQLEETMFELKK-NYTIIIVTHNMQQ------------------AARASDYTAFFYLGD 239 (267)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCHHH------------------HHHhcCEEEEEECCE
Confidence 4444445443 6899999996543 344678888887654
No 334
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.76 E-value=2.3e-08 Score=95.83 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
|++|++++|.|+||+||||| ++++.+..++..+.++++
T Consensus 27 i~~Ge~~~I~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~ 64 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTL-VRVVLGLVAPDEGVIKRN 64 (251)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEC
Confidence 67999999999999999999 777777766555555554
No 335
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.76 E-value=4.9e-08 Score=105.30 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=101.0
Q ss_pred hhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCCHHHHHHhccccCccccCCCCCH
Q 014268 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 182 (427)
Q Consensus 106 ~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~ 182 (427)
-|+.+-+ -+++|++++|.|+||+||||| ++++.+...++ .+.+++++.......+.+.+++.+++..+....++
T Consensus 40 iL~~vs~--~i~~Ge~~aI~G~sGsGKSTL-L~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 40 LLKNVSG--VAKPGELLAVMGSSGAGKTTL-MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred cccCCEE--EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 3444433 788999999999999999999 77776655443 46788888754444566778998887766666677
Q ss_pred HHHHHHHHHHHhcC-------------CccEEEEeccc-ccCC----CCccCCcccchhHHHHHHHHHHH----------
Q 014268 183 EQALSLVDTLIRSG-------------SVDVVVVDSVA-ALVP----KGELDGEMGDAHMAMQARLMSQA---------- 234 (427)
Q Consensus 183 ~~~~~~~~~l~~~~-------------~~~lvvIDsl~-~l~~----~~~~~~~~g~~~~~~~ar~ls~~---------- 234 (427)
.+.+.....+.... -++.+-++... .... ...+++ |++++...++++...
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSg--GqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSG--GERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCc--chhhHHHHHHHHHcCCCEEEeeCCC
Confidence 66654322210000 00001011111 1111 023555 777888888877543
Q ss_pred ----------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 ----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 ----------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+.++.+.+.+.|.|||+++|..+. .+.+.+|.++.|..+.....+
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~-----------------~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSS-----------------ELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCH-----------------HHHHHhceEEEeeCCeEEEEC
Confidence 333333333459999999996431 244567888888766544433
No 336
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=4.7e-08 Score=97.36 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=91.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
-|++|++++|+|++||||||| ++++.+... +..+.++|++..... ..+...+++.++...++. .++.+
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTL-l~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e 181 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTF-LRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD 181 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence 477999999999999999999 565566543 235678888776432 234556888887765543 34444
Q ss_pred HHHHHH----------------HHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------
Q 014268 185 ALSLVD----------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 234 (427)
Q Consensus 185 ~~~~~~----------------~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------- 234 (427)
.+.... ..+....+.- -++.... .....+++ |++++...+|++...
T Consensus 182 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~l~~~~~-~~~~~LSg--GqkqRl~LARAl~~~p~IlLLDEPts~LD 257 (329)
T PRK14257 182 NVAYGPRNNGINDRKILEKIVEKSLKSAALWD-EVKDDLD-KAGNALSG--GQQQRLCIARAIALEPEVLLMDEPTSALD 257 (329)
T ss_pred HHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-hhhhhhh-CCcccCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 433211 1111111000 0011101 11234444 777788888877643
Q ss_pred ------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 ------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+...+.+ ++|||+++|.... +..+||.+++|+.+...
T Consensus 258 ~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~------------------i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 258 PIATAKIEELILELKK-KYSIIIVTHSMAQ------------------AQRISDETVFFYQGWIE 303 (329)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 4444444444 6999999996543 45568999988766543
No 337
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.75 E-value=1.8e-08 Score=106.74 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=91.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCcc--ccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENL--LLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l--~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+|||||||| ++++.++.+ ..+.++++++.... . .+.+.+++.+++. .+....++.+.+
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTT-GLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 477999999999999999999 677777765 56778887754321 1 1234578888775 233444555544
Q ss_pred HHHHHHH----h----c----CCccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH-------------------
Q 014268 187 SLVDTLI----R----S----GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 234 (427)
Q Consensus 187 ~~~~~l~----~----~----~~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------- 234 (427)
....... . . .-+..+-+. .... .+...+++ |++|+...++++...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-RYPAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-cCCccCCH--HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 3211000 0 0 001111121 1111 12245555 777777777776643
Q ss_pred -HHHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 -LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 -L~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+. +.++|||++||.... +..+||.+++|+.+..
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLHV------------------VRALCHQVIVLRQGEV 504 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEE
Confidence 444444443 358999999996653 4456888888876543
No 338
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=4.9e-08 Score=94.24 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.. +..+.++++++... . ..+.+.+++.+++..++. .++.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 33 IPKNQITAFIGPSGCGKSTI-LRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 66999999999999999999 666666543 24567788776431 1 234556888888765443 244443
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 111 l 111 (264)
T PRK14243 111 I 111 (264)
T ss_pred H
Confidence 3
No 339
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.75 E-value=1.3e-08 Score=101.15 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=78.4
Q ss_pred EEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh--------
Q 014268 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-------- 194 (427)
Q Consensus 124 I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~-------- 194 (427)
|.|+|||||||| ++++.++.++..+.++++++.... ....+.+++.+++..++...++.+.+........
T Consensus 1 l~G~nGsGKSTL-l~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTL-LRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 579999999999 888888887777888888765433 2234568888888766655666665543211000
Q ss_pred --cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-hcCCcEEEE
Q 014268 195 --SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLSQTILIF 251 (427)
Q Consensus 195 --~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~~~~~tVI~ 251 (427)
..-++.+-++.+..-. ...+++ |++|+...+++++.. +..+.+.+ ++.+.|||+
T Consensus 80 ~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRK-PHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHcCCcchhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0001111112111111 234554 677777777776643 43333333 346999999
Q ss_pred EecCCcc
Q 014268 252 INQVRAK 258 (427)
Q Consensus 252 isql~~~ 258 (427)
++|....
T Consensus 157 vTHd~~e 163 (325)
T TIGR01187 157 VTHDQEE 163 (325)
T ss_pred EeCCHHH
Confidence 9997654
No 340
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.74 E-value=3.4e-08 Score=108.22 Aligned_cols=154 Identities=20% Similarity=0.246 Sum_probs=93.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCC-----------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPD----------- 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~----------- 180 (427)
-+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+|+..++...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~ 581 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTV-AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC
Confidence 378999999999999999999 777788877778889998865433 45677899998877655421
Q ss_pred -CHHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-----------------HHH
Q 014268 181 -CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRK 237 (427)
Q Consensus 181 -~~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-----------------L~~ 237 (427)
+.+++.+.++. .+....-+ +|..-.-. ...+++ |++|+...+|++.+. -..
T Consensus 582 ~~~e~i~~al~~a~l~~~i~~lp~G---ldT~ige~-G~~LSG--GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~ 655 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHDFIMEFPNG---YDTEVGEK-GSQLSG--GQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655 (711)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCCc---cCCcccCC-CCcCCH--HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHH
Confidence 22232222221 11110000 11111100 123454 778888888877653 122
Q ss_pred HHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccc
Q 014268 238 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 238 L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
+.+.....++|+|+++|..+. + ..||.++.|..+....
T Consensus 656 i~~~~~~~~~TvIiItHrl~~------------------i-~~aD~IivL~~G~ive 693 (711)
T TIGR00958 656 LQESRSRASRTVLLIAHRLST------------------V-ERADQILVLKKGSVVE 693 (711)
T ss_pred HHHhhccCCCeEEEEeccHHH------------------H-HhCCEEEEEECCEEEE
Confidence 222223358999999995432 2 2389999987665443
No 341
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.5e-08 Score=97.53 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC-----ceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-----GYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~-----~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.++.++. .+.++++++... . ..+.+.+++.+++..++. .++.+.
T Consensus 30 i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en 107 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTF-LKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN 107 (261)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence 66999999999999999999 77777776553 456677665421 1 233455777777654443 455444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 108 l 108 (261)
T PRK14258 108 V 108 (261)
T ss_pred H
Confidence 3
No 342
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=7.3e-08 Score=92.70 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=45.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCc------eEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG------YCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~------~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+.+|++++|.|+||+||||| ++++.+...+.. +.++++++.... ..+...+++.+++..++...++.+.+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTL-l~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 111 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTL-LKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNI 111 (257)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHH
Confidence 56999999999999999999 677777765443 334444443221 23345678877776555444554444
No 343
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.73 E-value=6.1e-08 Score=102.52 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEe
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFID 154 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is 154 (427)
-+.+|++++|.|+|||||||| ++++.++. .+..+.++++
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVL-MHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhcccCCCCceEEEEe
Confidence 366999999999999999999 77777764 4555666665
No 344
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=4.9e-08 Score=93.51 Aligned_cols=69 Identities=23% Similarity=0.325 Sum_probs=45.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh--c---CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--Q---GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~--~---~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|++|++++|.|+||+||||| ++++.++.. + ..+.++++++.... ....+.+++.+++..++.. ++.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~en 106 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTL-LRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYEN 106 (253)
T ss_pred ECCCcEEEEECCCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHH
Confidence 66999999999999999999 677776543 1 24667777654321 2234457787776554432 44444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 107 i 107 (253)
T PRK14261 107 V 107 (253)
T ss_pred H
Confidence 3
No 345
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.73 E-value=6.3e-08 Score=93.52 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
|++|++++|.|+||+||||| ++++.+..++..+.++++++
T Consensus 47 i~~Ge~~~liG~NGsGKSTL-lk~L~Gl~~p~~G~I~~~g~ 86 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTL-SNIIGGSLSPTVGKVDRNGE 86 (264)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCE
Confidence 66999999999999999999 77777776665565665553
No 346
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.72 E-value=5.8e-08 Score=92.97 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
-+++|++++|.|+||+||||| ++++.+..++..+.++++++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTL-LGCLAGRLAPDHGTATYIMRS 66 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEEeccc
Confidence 366999999999999999999 778888877767778887654
No 347
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.72 E-value=4.9e-08 Score=102.51 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H--HHHHHhccccCcc---ccCCCCCHHHH---
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENL---LLAQPDCGEQA--- 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~--~~~~~ig~~~~~l---~~~~~~~~~~~--- 185 (427)
+++|++++|.|+|||||||| ++++.++.++..+.++++++.... . .+.+.+++.++.. .++...+..+.
T Consensus 271 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDI-VETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EeCCcEEEEecCCCCCHHHH-HHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 67999999999999999999 777777777777778887754322 1 1233366666542 12222222111
Q ss_pred --H----------------HHHHHHHhcCCccEEEE-ecccccCCCCccCCcccchhHHHHHHHHHHH------------
Q 014268 186 --L----------------SLVDTLIRSGSVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA------------ 234 (427)
Q Consensus 186 --~----------------~~~~~l~~~~~~~lvvI-Dsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------ 234 (427)
+ ..+..++ ..+-+ +... -.+...+++ |++++...+++++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~l~~~~~-~~~~~~LSg--Gq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVI-----DSMRVKTPGH-RTQIGSLSG--GNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHH-----HhcCccCCCc-ccccccCCc--HHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 0 0011111 11111 1111 112245565 777777777776543
Q ss_pred --------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEec
Q 014268 235 --------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 235 --------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
+.++...+.+.+.|||++||..+. +..+||.+++|.++
T Consensus 422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~------------------~~~~~d~v~~l~~g 467 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMPE------------------LLGITDRILVMSNG 467 (491)
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEECCChHH------------------HHhhCCEEEEEECC
Confidence 555555556679999999997654 44568888888654
No 348
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=6.3e-08 Score=93.48 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=46.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCC------C-HHHHHHhccccCccccCCCCCHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL------D-PSLAETIGVKTENLLLAQPDCGE 183 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~------~-~~~~~~ig~~~~~l~~~~~~~~~ 183 (427)
|++|++++|.|+||+||||| ++++.+...+ ..+.++++++... . ..+.+.+++.+++..++.. ++.
T Consensus 39 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~ 116 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTF-LRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIF 116 (265)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHH
Confidence 66999999999999999999 6777776542 3566777765321 1 2344567887776554433 444
Q ss_pred HHH
Q 014268 184 QAL 186 (427)
Q Consensus 184 ~~~ 186 (427)
+.+
T Consensus 117 eni 119 (265)
T PRK14252 117 ENV 119 (265)
T ss_pred HHH
Confidence 433
No 349
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.72 E-value=3e-08 Score=117.23 Aligned_cols=158 Identities=12% Similarity=0.106 Sum_probs=97.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
.+++|++++|.|+||+||||| ++++.++.++..+.+++.+..... ..+.+.+|+.+++..+....++.+.+.....+
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTL-LkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTT-LSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHH-HHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 478999999999999999999 889999888888888888765433 23345689988877666666776665543221
Q ss_pred HhcC----------CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~~----------~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
.... -++.+-++...... ...+++ |++++...++++... +..+.+.+
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLSG--GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 1000 00111111111111 134444 556666666555432 44444444
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccccc
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
+ .|.+||+++|..+. ++..||.++.|.++.....
T Consensus 1108 ~-~g~TIIltTHdmde------------------a~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1108 R-SGRTIIMSTHHMDE------------------ADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred h-CCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4 48999999997764 3345677777776654443
No 350
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=4.3e-08 Score=103.96 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-|.+|++++|.|+|||||||| ++++.+..++..+.++++.
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTF-MKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecC
Confidence 366999999999999999999 7888887766666666654
No 351
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=8.1e-08 Score=91.90 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh--c---CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--Q---GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~--~---~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+.+|++++|.|+||+||||| ++++.++.. + ..+.++++++.... ..+.+.+++.+++..++. .++.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~n 105 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTY-LRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYEN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHH
Confidence 66999999999999999999 677766543 2 25667787764321 123445788887755444 355444
Q ss_pred HH
Q 014268 186 LS 187 (427)
Q Consensus 186 ~~ 187 (427)
+.
T Consensus 106 l~ 107 (252)
T PRK14255 106 VI 107 (252)
T ss_pred HH
Confidence 43
No 352
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.70 E-value=4.1e-08 Score=92.41 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+++|++++|.|+||+||||| ++++.++.++..+.++++++
T Consensus 45 i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~ 84 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTL-LRLLAGIYPPDSGTVTVRGR 84 (224)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCE
Confidence 66999999999999999999 77777777776777777664
No 353
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.70 E-value=6.9e-08 Score=102.75 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHH---H-HH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ---A-LS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~---~-~~ 187 (427)
-+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++.....++ . .+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 423 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPA 423 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHH
Confidence 367999999999999999999 677778877778888888775443 356677888888765443211000 0 01
Q ss_pred HHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH---------------------HHHHHHHhhcCC
Q 014268 188 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHSLSLSQ 246 (427)
Q Consensus 188 ~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~---------------------L~~L~~~l~~~~ 246 (427)
.+...+...+.+..+ +..........+++ |++|+...+|++.+. .+.|.+.+++.+
T Consensus 424 ~~~~~~~~~~l~~~~-~~~~~~~~G~~LSg--Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 500 (547)
T PRK10522 424 LVEKWLERLKMAHKL-ELEDGRISNLKLSK--GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500 (547)
T ss_pred HHHHHHHHcCCchhh-hccccCCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 112222221221100 00000000134554 777777777776543 233333333358
Q ss_pred cEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 247 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 247 ~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.|+|+++|... ....||.++.+..+..
T Consensus 501 ~tvi~itH~~~-------------------~~~~~d~i~~l~~G~i 527 (547)
T PRK10522 501 KTIFAISHDDH-------------------YFIHADRLLEMRNGQL 527 (547)
T ss_pred CEEEEEEechH-------------------HHHhCCEEEEEECCEE
Confidence 99999999532 1234888888876543
No 354
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.69 E-value=6.1e-08 Score=104.13 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=50.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
+++|+.++|.|++||||||| ++++.+...+..+.+++++....+ ..+.+.+++.+|+..+++
T Consensus 364 i~~Ge~iaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~ 428 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTL-ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA 428 (592)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc
Confidence 78999999999999999999 778888877777888998865432 467788999988776554
No 355
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=7.9e-08 Score=94.78 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
|.+|++++|.|+||+||||| ++++.++.+ +..+.+++++..... ..+.+.+++.+++..++. .++.+.
T Consensus 68 i~~Ge~~~IvG~nGsGKSTL-l~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 145 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTF-LRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIREN 145 (305)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHH
Confidence 66999999999999999999 666666653 346678887754321 233456788887765443 255444
Q ss_pred H
Q 014268 186 L 186 (427)
Q Consensus 186 ~ 186 (427)
+
T Consensus 146 l 146 (305)
T PRK14264 146 I 146 (305)
T ss_pred H
Confidence 4
No 356
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.69 E-value=1e-07 Score=91.63 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcccc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL 176 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~ 176 (427)
+++|++++|.|+||+||||| ++++.+...+..+.+++++..... ..+.+.+++.+++..+
T Consensus 44 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l 106 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSL-SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPIL 106 (257)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcc
Confidence 66999999999999999999 777777777667778887754322 2345567777766543
No 357
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1e-07 Score=98.76 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
+++|+.++|+|++||||||| ++++.+..++..+.+.+++....+ ..+.+++.+.+++.+++.
T Consensus 344 ~~~g~~talvG~SGaGKSTL-l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTL-LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred ecCCcEEEEECCCCCCHHHH-HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc
Confidence 67999999999999999999 899999988788888888654433 578888999888776554
No 358
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.68 E-value=3e-08 Score=105.10 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC---HH---HH-HHhccccCccc--cCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD---PS---LA-ETIGVKTENLL--LAQPD 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~---~~---~~-~~ig~~~~~l~--~~~~~ 180 (427)
-+.+|++++|.|+|||||||| ++++.++.++ ..+.++++++.... .. +. +.+|+.+++.. +....
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~ 109 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVT-ALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH 109 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence 467999999999999999999 6666677653 46778887765322 11 11 35788888753 22223
Q ss_pred CHHHHHHHHHHHH---------h--cCCccEEEEeccc--ccCCCCccCCcccchhHHHHHHHHHHH-------------
Q 014268 181 CGEQALSLVDTLI---------R--SGSVDVVVVDSVA--ALVPKGELDGEMGDAHMAMQARLMSQA------------- 234 (427)
Q Consensus 181 ~~~~~~~~~~~l~---------~--~~~~~lvvIDsl~--~l~~~~~~~~~~g~~~~~~~ar~ls~~------------- 234 (427)
++.+.+....... . ..-+..+-++... .-.+...+++ |++|+...+++++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg--Ge~qrv~iAraL~~~p~llllDEPt~~L 187 (529)
T PRK15134 110 TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG--GERQRVMIAMALLTRPELLIADEPTTAL 187 (529)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcc
Confidence 4443322110000 0 0001111122110 0111245555 777777777776643
Q ss_pred -------HHHHHHHh-hcCCcEEEEEecCCccc
Q 014268 235 -------LRKLSHSL-SLSQTILIFINQVRAKL 259 (427)
Q Consensus 235 -------L~~L~~~l-~~~~~tVI~isql~~~v 259 (427)
+..+.+.+ ++.+.|||+++|....+
T Consensus 188 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 188 DVSVQAQILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 33333333 33589999999977653
No 359
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.68 E-value=3.8e-08 Score=106.30 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC------------CC-HH---H-HHHhccccCcc--c
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD-PS---L-AETIGVKTENL--L 175 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~------------~~-~~---~-~~~ig~~~~~l--~ 175 (427)
-+++|++++|.|+|||||||| ++++.++..+..+.+++++... .. .. + .+.+|+.+++. .
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTL-l~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~ 116 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVT-ALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS 116 (623)
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence 367999999999999999999 6777777666666666654311 01 11 1 13578888875 2
Q ss_pred cCCCCCHHHHHHHHHHHH---hc--------CCccEEEEec---ccccCCCCccCCcccchhHHHHHHHHHHH-------
Q 014268 176 LAQPDCGEQALSLVDTLI---RS--------GSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA------- 234 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~---~~--------~~~~lvvIDs---l~~l~~~~~~~~~~g~~~~~~~ar~ls~~------- 234 (427)
+....++.+.+.....+. .. .-+..+-+.. .... +..++++ |++|+...++++...
T Consensus 117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~~LSg--Gq~QRv~iA~AL~~~P~lLllD 193 (623)
T PRK10261 117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR-YPHQLSG--GMRQRVMIAMALSCRPAVLIAD 193 (623)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC-CCccCCH--HHHHHHHHHHHHhCCCCEEEEe
Confidence 333345555443211100 00 0011111211 1111 1245665 778888888777643
Q ss_pred -------------HHHHHHHhh-cCCcEEEEEecCCccc
Q 014268 235 -------------LRKLSHSLS-LSQTILIFINQVRAKL 259 (427)
Q Consensus 235 -------------L~~L~~~l~-~~~~tVI~isql~~~v 259 (427)
+..+.+.+. +.|+|||+++|....+
T Consensus 194 EPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~ 232 (623)
T PRK10261 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV 232 (623)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 444555543 4699999999976543
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=98.68 E-value=3.8e-08 Score=105.31 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=31.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.++++
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTL-lk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTF-AKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEe
Confidence 578999999999999999999 777777776655655553
No 361
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.68 E-value=1e-07 Score=102.00 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
-+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+|+..++.
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL-~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 427 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTL-LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS 427 (574)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc
Confidence 368999999999999999999 777777777777888998875443 456677899888766554
No 362
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.67 E-value=9.3e-08 Score=101.69 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=47.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 404 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTL-ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF 404 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc
Confidence 378999999999999999999 777777777777778888764332 34566788888876554
No 363
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=4.7e-08 Score=103.61 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-|++|++++|.|+||+||||| ++++.++.++..+.++++.
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~G~~~p~~G~i~~~~ 380 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTL-LRTLVGELEPDSGTVKWSE 380 (530)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECC
Confidence 367999999999999999999 7777777766666666654
No 364
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.2e-07 Score=90.55 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=43.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-----cCceEEEEeCCCCCC-----HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-----~~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~ 178 (427)
-|++|++++|.|+||+||||| ++++.++.. +..+.+++++..... ..+.+.+++.+++..++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTF-IRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 367999999999999999999 666666532 245667777764321 234556888887754443
No 365
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.67 E-value=1.5e-07 Score=103.00 Aligned_cols=61 Identities=26% Similarity=0.332 Sum_probs=49.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|.|++||||||| ++++.++..+..+.+++++....+ ..+.+.+++++|+..++
T Consensus 488 i~~G~~iaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf 551 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTL-LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF 551 (694)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhh
Confidence 78999999999999999999 788888877778889998865433 45677889988876544
No 366
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.66 E-value=1.2e-07 Score=101.80 Aligned_cols=61 Identities=26% Similarity=0.367 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++
T Consensus 358 i~~G~~v~IvG~sGsGKSTL-l~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 421 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTL-INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF 421 (588)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc
Confidence 67999999999999999999 788888877778889998865443 46677899988876554
No 367
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=1.1e-07 Score=105.84 Aligned_cols=60 Identities=32% Similarity=0.521 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcccc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL 176 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~ 176 (427)
+|+|+.+.|+|++||||||+ ++++..+..+..+.+++|+++... +.+..++|++.|...+
T Consensus 376 i~~G~~valVG~SGsGKST~-i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTL-IQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 79999999999999999999 999999998999999999987665 4567789998776533
No 368
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.65 E-value=1.1e-07 Score=101.51 Aligned_cols=170 Identities=22% Similarity=0.243 Sum_probs=102.3
Q ss_pred CCccccCchh----hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhcc
Q 014268 97 VPVVSTGSFA----LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGV 169 (427)
Q Consensus 97 ~~~l~TG~~~----LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~ 169 (427)
...++.+++. |+.+-= .+++|+.++|+||+||||||+ .+++..+..+..+.+++|+.+..+ ..+.+.+++
T Consensus 331 f~~vsf~y~~~~~vl~~is~--~i~~Ge~vaiVG~sGsGKSTl-~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 331 FENVSFSYPGKKPVLKDISF--SIEPGEKVAIVGPSGSGKSTL-IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EEEEEEEcCCCCccccCceE--EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 4456666653 333322 488999999999999999999 677777776667777887755444 567888999
Q ss_pred ccCccccCC-----------C-CCHHHHHHHHHHH-----HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHH
Q 014268 170 KTENLLLAQ-----------P-DCGEQALSLVDTL-----IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS 232 (427)
Q Consensus 170 ~~~~l~~~~-----------~-~~~~~~~~~~~~l-----~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls 232 (427)
++|+..++. + .+.+++.+.++.. +... ++ -.|..-. .....+++ |++|+...||++.
T Consensus 408 V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l-p~--g~dt~vg-e~G~~LSg--GQrQrlaiARall 481 (567)
T COG1132 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANL-PD--GYDTIVG-ERGVNLSG--GQRQRLAIARALL 481 (567)
T ss_pred EcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC-cc--cccceec-CCCccCCH--HHHHHHHHHHHHh
Confidence 988765554 2 2334444433321 1111 11 0111111 11123444 7778878887765
Q ss_pred HH---------------------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 233 QA---------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 233 ~~---------------------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+. ...+... . .+.|+|+++|-.. .+.+ ||.++.+..+.
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l-~-~~rT~iiIaHRls------------------ti~~-aD~IiVl~~G~ 540 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKL-L-KGRTTLIIAHRLS------------------TIKN-ADRIIVLDNGR 540 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHH-h-cCCEEEEEeccHh------------------HHHh-CCEEEEEECCE
Confidence 43 2333322 2 3568888999443 3444 89999998876
Q ss_pred ccccC
Q 014268 292 LVKKG 296 (427)
Q Consensus 292 ~~~~~ 296 (427)
....|
T Consensus 541 i~e~G 545 (567)
T COG1132 541 IVERG 545 (567)
T ss_pred EEEec
Confidence 44443
No 369
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.65 E-value=1.4e-07 Score=84.81 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccc----cCccccCCCCCHHHHHHHHHHHHhcC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLLLAQPDCGEQALSLVDTLIRSG 196 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~----~~~l~~~~~~~~~~~~~~~~~l~~~~ 196 (427)
++.|.|++|||||+||.+++.. .+.+++|+.+..+.+..+.+++.-. +..+. +.+....+...+....
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~-----t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWR-----TIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCce-----EeecHHHHHHHHHhcC
Confidence 4789999999999999999865 4668999999988886655554321 22211 1222222222221112
Q ss_pred CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEec
Q 014268 197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (427)
Q Consensus 197 ~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isq 254 (427)
+.+.|+||+++.+... .+....+. . ...+...+..|...+++.++++|+++.
T Consensus 73 ~~~~VLIDclt~~~~n-~l~~~~~~--~---~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 73 PGDVVLIDCLTLWVTN-LLFADLEE--W---EAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred CCCEEEEEcHhHHHHH-hCCCcccc--c---hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 5678999999988732 22111010 0 011234456666666677988888864
No 370
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.64 E-value=1.3e-07 Score=101.58 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++.
T Consensus 358 i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 422 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTL-INLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN 422 (585)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc
Confidence 67999999999999999999 777778877777888888764332 356677888888765543
No 371
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.64 E-value=1.4e-07 Score=90.72 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~ 152 (427)
+.+|++++|.|+||+||||| ++++.++.++..+.++
T Consensus 23 i~~Ge~~~IvG~nGsGKSTL-lk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTA-LKILAGKLKPNLGKFD 58 (255)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHhCCcCCCCceEe
Confidence 56999999999999999999 7888888776666564
No 372
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.63 E-value=1.7e-07 Score=102.84 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|+.++|.|++||||||| ++++.++..+..+.+++++....+ ..+.+.+++.+|+..++
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 560 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTL-AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560 (708)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceeh
Confidence 378999999999999999999 777778877778889998865432 45677899988875543
No 373
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.63 E-value=1.5e-07 Score=100.70 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=48.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
-+++|+.++|.|++||||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++.
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTL-l~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTL-LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402 (569)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc
Confidence 368999999999999999999 777777777777778888764332 356677888887765543
No 374
>PF13479 AAA_24: AAA domain
Probab=98.62 E-value=2.9e-07 Score=86.06 Aligned_cols=157 Identities=22% Similarity=0.161 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh-cCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-SGS 197 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~-~~~ 197 (427)
+-.++|+|+||+||||||..+ .+++||+.|.......... +....+..+.+++.+.+..+.. ...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~------~~~~i~i~s~~~~~~~~~~l~~~~~~ 68 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD------DGDVIPITSWEDFLEALDELEEDEAD 68 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc------CCCeeCcCCHHHHHHHHHHHHhccCC
Confidence 346899999999999998766 5689999998744211100 1122233367777776655432 467
Q ss_pred ccEEEEecccccCCC---Ccc------CCcccchhHHHHHHHHHHHHHHHHHH-hhcCCcEEEEEecCCcccc-cc---c
Q 014268 198 VDVVVVDSVAALVPK---GEL------DGEMGDAHMAMQARLMSQALRKLSHS-LSLSQTILIFINQVRAKLS-TF---G 263 (427)
Q Consensus 198 ~~lvvIDsl~~l~~~---~~~------~~~~g~~~~~~~ar~ls~~L~~L~~~-l~~~~~tVI~isql~~~v~-~~---~ 263 (427)
.+.||||++..+... ... ..+.+......-...+...+.++... ++..++.||++.|....-. .. .
T Consensus 69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~~~~~~~~ 148 (213)
T PF13479_consen 69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEEDEDGGKYT 148 (213)
T ss_pred CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEcCCCCcee
Confidence 899999999865321 001 00001100011223333444444443 3347999999999766533 10 0
Q ss_pred cCCCeeeccCCceeeeecceEEEEEe
Q 014268 264 FGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 264 ~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
+..|.........+...+|+|..+..
T Consensus 149 ~~~~~l~~k~~~~l~~~~D~V~~l~~ 174 (213)
T PF13479_consen 149 RYKPKLGKKVRNELPGWFDVVGRLRV 174 (213)
T ss_pred EEeeccChhHHhhhhecccEEEEEEE
Confidence 11111111113478999999977764
No 375
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3e-07 Score=94.35 Aligned_cols=61 Identities=31% Similarity=0.488 Sum_probs=49.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+|+|+-++|+|+|||||||+ ++++..+.. ..+-+++|+.+... +.+.+.+|++||+-.++
T Consensus 374 ~I~kGekVaIvG~nGsGKSTi-lr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTI-LRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF 437 (591)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccccc
Confidence 489999999999999999999 777777766 56678899887654 45677899999865433
No 376
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.1e-07 Score=85.83 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
++.+|+++++.||+||||||| +++++++..+..+.+-++......+ ...-|+++|+-.+....++.++.++--++.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTL-Lnl~AGf~~P~~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTL-LNLIAGFVTPSRGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred eecCCCEEEEEcCCCccHHHH-HHHHhcCcCcccceEEECCEeccCC--CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 578999999999999999999 9999999888777777765422111 112356666555444444433332211110
Q ss_pred ---------hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HH-HHHHHhh
Q 014268 194 ---------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSHSLS 243 (427)
Q Consensus 194 ---------~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~-~L~~~l~ 243 (427)
....+.+|-+......+ ..++++ |++|+...+|+++-. +. -|...++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~ 180 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 00001111111111111 134444 666666666666532 22 2334456
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.|.-+++++|..++
T Consensus 181 ~tgk~~lliTH~ieE 195 (259)
T COG4525 181 ETGKQVLLITHDIEE 195 (259)
T ss_pred HhCCeEEEEeccHHH
Confidence 689999999996553
No 377
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.60 E-value=1.7e-07 Score=99.93 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|+|||||||| ++++.+...+..+.++++.. ..+|+.+++..+....++.+.+
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTL-lk~i~G~~~p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l 91 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTL-LRIMAGVDKEFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENV 91 (556)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHH
Confidence 367999999999999999999 88888887666666666421 2356666665444444444443
No 378
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.60 E-value=1.8e-07 Score=97.38 Aligned_cols=41 Identities=34% Similarity=0.449 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
-+++|++++|.|+||+||||| ++++.++.++..+.+++++.
T Consensus 46 sI~~GEivgIiGpNGSGKSTL-LkiLaGLl~P~sGeI~I~G~ 86 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTL-SNLIAGVTMPNKGTVDIKGS 86 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCceEEEECCE
Confidence 467999999999999999999 77777877766666666553
No 379
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.60 E-value=2.5e-07 Score=101.22 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=50.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+++..++
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL-~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf 543 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF 543 (694)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeeh
Confidence 378999999999999999999 788888877778889998875433 45677789988876544
No 380
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.60 E-value=2.1e-07 Score=97.72 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=41.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCC----HHHHHHhccccCcc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD----PSLAETIGVKTENL 174 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~----~~~~~~ig~~~~~l 174 (427)
-+++|++++|.|+|||||||| ++++.+..++ ..+.++++++.... ..+.+.+++.+++.
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTL-l~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTL-LSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 367999999999999999999 6777776543 35667777653211 12345677777654
No 381
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.59 E-value=1.7e-07 Score=99.28 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
-+++|+.++|.|++|+||||| ++++.+..++..+.+++++....+ ..+.+.+++.+|+..++.
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~ 409 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTL-LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA 409 (529)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC
Confidence 478999999999999999999 788888877777888898875433 466778999988776554
No 382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.59 E-value=1.1e-06 Score=74.27 Aligned_cols=92 Identities=33% Similarity=0.428 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 197 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 197 (427)
++..+.|+||||+||||++..++..+......++|++.+.............. ................+........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII--VGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhh--hhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999988888887765557999998876654333221000 0000111222222333333344444
Q ss_pred ccEEEEecccccCC
Q 014268 198 VDVVVVDSVAALVP 211 (427)
Q Consensus 198 ~~lvvIDsl~~l~~ 211 (427)
+.++++|.+..+..
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 79999999998873
No 383
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.58 E-value=1.4e-07 Score=100.94 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|.|++|+||||| ++++.+...+..+.+++++....+ ..+.+.+++.+|+..++
T Consensus 355 i~~G~~v~IvG~sGsGKSTL-l~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf 418 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTL-VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLF 418 (571)
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccc
Confidence 67999999999999999999 778888877778889988764322 45667788888876544
No 384
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.58 E-value=3.9e-07 Score=97.58 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=47.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|.|++|+||||| ++++.+...+..+.+++++..... ..+.+.+++.+++..++
T Consensus 363 i~~Ge~i~IvG~sGsGKSTL-lklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf 426 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTL-FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLF 426 (576)
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccc
Confidence 77999999999999999999 677777776667788888754332 45667789988876544
No 385
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.2e-07 Score=97.07 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-|+||++++|+||+|+||||+ .+++.++..+..+.+.+|+....+ .-+.+.+|++.|+..++
T Consensus 490 ti~pGe~vALVGPSGsGKSTi-asLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTI-ASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 589999999999999999999 678888888888889999887655 45667788887655443
No 386
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.57 E-value=3.1e-07 Score=97.32 Aligned_cols=62 Identities=31% Similarity=0.363 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--CHHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~~~~~~~ig~~~~~l~~~~ 178 (427)
+++|+.++|.|++||||||| ++++.+...+..+.+++++.... ...+.+.+++++|+..++.
T Consensus 358 i~~G~~vaIvG~SGsGKSTL-l~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~ 421 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL-LMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD 421 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccccc
Confidence 78999999999999999999 77778888788888999875433 3456677899988776553
No 387
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.57 E-value=2.1e-07 Score=99.16 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=44.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-|++|++++|.|+||+||||| ++++.+...+..+.++++.. ..+|+.+++..+....++.+.+
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTL-l~~i~G~~~p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~i 89 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTL-LRIMAGVDKEFNGEARPAPG--------IKVGYLPQEPQLDPTKTVRENV 89 (552)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC--------CEEEEEeccCCCCCCCcHHHHH
Confidence 367999999999999999999 78888887666666666431 2466666665544444554443
No 388
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.7e-07 Score=84.50 Aligned_cols=45 Identities=31% Similarity=0.533 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCCCCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALD 160 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E~~~~ 160 (427)
+++|++++|.||||||||||+..++..-. ....+-+.|++++..+
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE 72 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence 67999999999999999999665544321 2346778899987665
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=98.56 E-value=2.8e-07 Score=108.84 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=95.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCC-----------C
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP-----------D 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~-----------~ 180 (427)
-+++|+.++|+||+||||||| ++++..+..+..|.+++|+.+..+ ..+.+++++.+|+..++.. .
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTL-l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~ 1339 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSM-LNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH 1339 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCC
Confidence 378999999999999999999 777777777778889999876554 4677889999887655432 2
Q ss_pred CHHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 181 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 181 ~~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
+-+++.+.++. .+.....+ +|..-.-. ...+++ |++|+...||++.+. +
T Consensus 1340 tdeei~~Al~~a~l~~~I~~lp~G---Ldt~Vge~-G~nLSg--GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130 1340 NDADLWESLERAHLKDVIRRNSLG---LDAEVSEA-GENFSV--GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred CHHHHHHHHHHcCcHHHHHhCccc---cCccccCC-CCCCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 33333333322 11110000 11111000 123443 677777777776543 2
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
.+..+.. ..++|||+++|-... +. .||.++.|..+.....|
T Consensus 1414 q~~I~~~-~~~~TvI~IAHRL~t------------------I~-~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1414 QKTIREE-FKSCTMLIIAHRLNT------------------II-DCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHH-CCCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEEeC
Confidence 2222222 148999999995543 22 37999999877654443
No 390
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.56 E-value=2.3e-07 Score=91.94 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=92.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccc--cCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 187 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~--~~~~~~~~~~~~ 187 (427)
+++|+.++|+|++|||||||.+.++..+... +.++|.++.... +.+.+++-+++++.+ +....++.+++.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 6799999999999999999988777665433 678888876443 345667777776654 222234444332
Q ss_pred H-----------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHH------------------
Q 014268 188 L-----------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS------------------ 232 (427)
Q Consensus 188 ~-----------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls------------------ 232 (427)
. +...+. -|-+|.-..-....+++| |++|+...+|++.
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~-----EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALE-----EVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHH-----HcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 1 111111 112333332222355555 5555555555543
Q ss_pred ------HHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 233 ------QALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 233 ------~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
..|+.|. +++|.+-+|+||....+ ...|+.+|.|+.+..+..|
T Consensus 461 VQaQvv~LLr~LQ---~k~~LsYLFISHDL~Vv------------------rAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 461 VQAQVLDLLRDLQ---QKHGLSYLFISHDLAVV------------------RALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred HHHHHHHHHHHHH---HHhCCeEEEEeccHHHH------------------HHhhceEEEEeCCEEeeeC
Confidence 2244444 45899999999977653 3358888888877766554
No 391
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.55 E-value=1.1e-06 Score=87.10 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=108.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHH----HhccccCcc---------------cc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAE----TIGVKTENL---------------LL 176 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~----~ig~~~~~l---------------~~ 176 (427)
...|+..+|-|.||+|||+|++.++..+.. .+.++|+|+.-..+..+.. +-.++..++ ..
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~~-~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~~~vp 85 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLKD-HGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLDKDVP 85 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHhc-cCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhccccccCc
Confidence 357999999999999999999999887764 4678999987544432211 111111111 11
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCC
Q 014268 177 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVR 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~ 256 (427)
......+.+.+.+.++-.....-+|++||.-++.. .+..+.+.. ..+-.....|...+++.++-+|+++.-.
T Consensus 86 ~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiie--yla~~~~~~------ed~e~l~~dLv~lard~g~~LIlVsEsa 157 (484)
T PF07088_consen 86 FERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIE--YLAEEHDEP------EDIETLTNDLVELARDMGINLILVSESA 157 (484)
T ss_pred ccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHH--HhhhhhcCc------HHHHHHHHHHHHHHhhcCceEEEEEecC
Confidence 11234566666666543345677899999666541 111111111 1233455666666677899999998755
Q ss_pred ccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCC-eeEEEEE
Q 014268 257 AKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK-TAQFELE 325 (427)
Q Consensus 257 ~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~-~~~~~i~ 325 (427)
+. . .+++.+|-|+-|+-.. ++.-...|.+++.|-|.-.-+. ...|.|.
T Consensus 158 ~~-------~---------~LdYivDGVVTL~v~~-----derGR~~R~L~LeKLRGV~I~q~~Y~fTL~ 206 (484)
T PF07088_consen 158 EN-------E---------PLDYIVDGVVTLQVKN-----DERGRTRRYLRLEKLRGVRIKQRLYPFTLA 206 (484)
T ss_pred CC-------C---------cchheeeeEEEEEecc-----ccCCceEEEEEehhhcCcccCCccceEEee
Confidence 43 1 4999999999994221 1111235689999998544332 3445553
No 392
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.55 E-value=3.7e-07 Score=99.03 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHH----HHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~----~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.+..++..+.++++++.... ..+ .+.+++.+++..++...++.+.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 106 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTL-MNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQN 106 (648)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHH
Confidence 56999999999999999999 788888877777778888875433 122 3457888887766655554443
No 393
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.54 E-value=1.4e-07 Score=102.19 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
-|.+|++++|.|+|||||||| ++++.+..++..+.+++
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTL-LKLMLGQLQADSGRIHC 378 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEE
Confidence 477999999999999999999 77777776655555555
No 394
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4e-07 Score=81.76 Aligned_cols=83 Identities=23% Similarity=0.244 Sum_probs=55.3
Q ss_pred cCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-H-HHHHHhccccCccccCCC
Q 014268 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-P-SLAETIGVKTENLLLAQP 179 (427)
Q Consensus 102 TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~-~~~~~ig~~~~~l~~~~~ 179 (427)
+=|.+|+..+. +|+++.|.||||+||||| |.+++++.++..+-+|+.++.... + .+.+.+-|.-.+.-+-..
T Consensus 16 ~lf~~L~f~l~-----~Ge~~~i~G~NG~GKTtL-LRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 16 TLFSDLSFTLN-----AGEALQITGPNGAGKTTL-LRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred eeecceeEEEc-----CCCEEEEECCCCCcHHHH-HHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 33456666555 999999999999999999 999999999888889998776554 2 233333333223333333
Q ss_pred CCHHHHHHHHH
Q 014268 180 DCGEQALSLVD 190 (427)
Q Consensus 180 ~~~~~~~~~~~ 190 (427)
.++.+.+.+..
T Consensus 90 LTa~ENL~F~~ 100 (209)
T COG4133 90 LTALENLHFWQ 100 (209)
T ss_pred hhHHHHHHHHH
Confidence 44444444433
No 395
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.8e-07 Score=93.44 Aligned_cols=154 Identities=23% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC---CHHHHHHhccccCccccC-----------CCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA-----------QPD 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~---~~~~~~~ig~~~~~l~~~-----------~~~ 180 (427)
-+.+|+-+.|.|++||||||| ++++.+...+..+.+-+++.... ++.+.+.+++..|+..++ .+.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTl-lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~ 438 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTL-LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD 438 (573)
T ss_pred eecCCCeEEEECCCCCCHHHH-HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC
Confidence 367999999999999999999 78887777777777777664433 245777888877755443 222
Q ss_pred -CHHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 181 -CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 181 -~~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+.+++.+.+.+ ++....-++-- .+.. ....++| |+++|...+|.+.+.
T Consensus 439 AsDEel~~aL~qvgL~~l~~~~p~gl~t--~lge--~G~~LSG--GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~ 512 (573)
T COG4987 439 ASDEELWAALQQVGLEKLLESAPDGLNT--WLGE--GGRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512 (573)
T ss_pred CCHHHHHHHHHHcCHHHHHHhChhhhhc--hhcc--CCCcCCc--hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHH
Confidence 44555444433 11111000000 0000 0123344 555555555554432
Q ss_pred -HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 235 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 235 -L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
+..|...+ .+.|+|+++|..+.++. +|.++++..+....++
T Consensus 513 vL~ll~~~~--~~kTll~vTHrL~~le~-------------------~drIivl~~Gkiie~G 554 (573)
T COG4987 513 VLALLFEHA--EGKTLLMVTHRLRGLER-------------------MDRIIVLDNGKIIEEG 554 (573)
T ss_pred HHHHHHHHh--cCCeEEEEecccccHhh-------------------cCEEEEEECCeeeecC
Confidence 44444444 48999999997775443 6888888876655444
No 396
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.54 E-value=1.6e-07 Score=100.13 Aligned_cols=39 Identities=31% Similarity=0.589 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
-+++|++++|.|+|||||||| ++++.+..++..+.+++.
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTL-FRMITGQEQPDSGTIKIG 382 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCeEEEEC
Confidence 378999999999999999999 777777766656666663
No 397
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=6.2e-07 Score=76.42 Aligned_cols=114 Identities=19% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCCCCC-----HHHHHHhccccCccccCCCCCHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~~~~-----~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+.+.++.|.|++|+|||+++.+++...... ...++|++...... ..++..++..... ..+..++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 357789999999999999999999887653 56788887654443 2344455554333 44677777
Q ss_pred HHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 014268 187 SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (427)
Q Consensus 187 ~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql 255 (427)
..+...+......++|||.++.+.. ..+...|+. .+.+.+++||++.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~-----------------~~~l~~l~~---l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFS-----------------DEFLEFLRS---LLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHT-----------------HHHHHHHHH---HTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCC-----------------HHHHHHHHH---HHhCCCCeEEEEECh
Confidence 7777777777778999999998630 122233444 344789999998764
No 398
>PLN03140 ABC transporter G family member; Provisional
Probab=98.53 E-value=4e-07 Score=106.25 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=94.9
Q ss_pred hhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHH
Q 014268 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183 (427)
Q Consensus 106 ~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~ 183 (427)
-|+.+-+ -+++|++++|.|+||+||||| ++++.+.... ..+.+.+++.........+.+|+.+|+..+....++.
T Consensus 895 iL~~vs~--~i~~Gel~aL~G~sGaGKTTL-L~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 895 LLREVTG--AFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred EeeCcEE--EEECCeEEEEECCCCCCHHHH-HHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 4454443 788999999999999999999 7777776542 2456777775443334456689988876555556776
Q ss_pred HHHHHHHHHHhcCC-------------ccEEEEecccccCC----CCccCCcccchhHHHHHHHHHHH------------
Q 014268 184 QALSLVDTLIRSGS-------------VDVVVVDSVAALVP----KGELDGEMGDAHMAMQARLMSQA------------ 234 (427)
Q Consensus 184 ~~~~~~~~l~~~~~-------------~~lvvIDsl~~l~~----~~~~~~~~g~~~~~~~ar~ls~~------------ 234 (427)
+.+.....+..... ++.+-++.+..... ...+++ |++++...++++...
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg--GerkRvsIa~aL~~~P~lL~LDEPTsg 1049 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST--EQRKRLTIAVELVANPSIIFMDEPTSG 1049 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH--HHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 66554321100000 01111111111110 023444 667777777666542
Q ss_pred --------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEe
Q 014268 235 --------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 289 (427)
Q Consensus 235 --------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r 289 (427)
+.++.+.+.+.|.|||+++|..+. .+...+|.++.|.+
T Consensus 1050 LD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~-----------------~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-----------------DIFEAFDELLLMKR 1095 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH-----------------HHHHhCCEEEEEcC
Confidence 333333444569999999996542 13446788888876
No 399
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.52 E-value=1.4e-07 Score=85.17 Aligned_cols=50 Identities=32% Similarity=0.385 Sum_probs=40.3
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
||..|+.+.= -+.+|++-+|.||||+||||| +-++.+-.++..+.+||++
T Consensus 17 GF~Aln~ls~--~v~~Gelr~lIGpNGAGKTT~-mD~ItGKtrp~~G~v~f~g 66 (249)
T COG4674 17 GFKALNDLSF--SVDPGELRVLIGPNGAGKTTL-MDVITGKTRPQEGEVLFDG 66 (249)
T ss_pred ceeeeeeeEE--EecCCeEEEEECCCCCCceee-eeeecccCCCCcceEEEcC
Confidence 5666666554 578999999999999999999 7777777777767778876
No 400
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.52 E-value=2e-07 Score=99.34 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCcc-ccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l-~~~~~~~~~~~~ 186 (427)
+++|++++|.|+|||||||| ++++.+..++..+.+++... ..+|+.+++. .+....++.+.+
T Consensus 347 i~~Ge~~~l~G~NGsGKSTL-l~~i~G~~~p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l 409 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTL-FKMITGQEQPDSGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEI 409 (556)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCc--------eEEEEEeCchhhcCCCCCHHHHH
Confidence 67999999999999999999 77777777666666666321 1356666654 333333444443
No 401
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.51 E-value=1.6e-07 Score=91.47 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
+++|++++|+|+||+||||| ++++.+..++..+.++++
T Consensus 60 i~~Ge~~~liG~NGsGKSTL-l~~I~Gl~~p~~G~I~i~ 97 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSL-LMLILGELEPSEGKIKHS 97 (282)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEEC
Confidence 67999999999999999999 667777766555545544
No 402
>PLN03232 ABC transporter C family member; Provisional
Probab=98.51 E-value=4.9e-07 Score=106.39 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCC-----------C
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP-----------D 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~-----------~ 180 (427)
-+++|+.++|+||+||||||| ++++.++..+..+.+++|+.+..+ ..+.+++++.+|+..++.. .
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL-~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~ 1336 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSM-LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEH 1336 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCC
Confidence 368999999999999999999 677777777777889999876544 4677889999987665532 1
Q ss_pred CHHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 181 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 181 ~~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
+.+++.+.++. .+....-+ +|..-.-. ...+++ |++|+...||++.+. +
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp~G---Ldt~v~e~-G~~LSg--GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNPFG---LDAEVSEG-GENFSV--GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCC---CCceecCC-CCCCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 22333333322 11110000 11111100 123444 777787788877653 2
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.+..+.. ..++|||+++|-... +. ++|.++.|..+..
T Consensus 1411 q~~L~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1411 QRTIREE-FKSCTMLVIAHRLNT------------------II-DCDKILVLSSGQV 1447 (1495)
T ss_pred HHHHHHH-cCCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEE
Confidence 2222222 148999999995432 22 3899999876543
No 403
>PTZ00243 ABC transporter; Provisional
Probab=98.51 E-value=6.8e-07 Score=105.35 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=51.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
+++|+.++|+|++||||||| ++++..+..+..+.+++|+.+..+ ..+.+.+++.+|+..++.
T Consensus 1333 I~~GekVaIVGrTGSGKSTL-l~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTL-LLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 67999999999999999999 677777777777889999876544 567788999999876654
No 404
>PLN03140 ABC transporter G family member; Provisional
Probab=98.50 E-value=2e-07 Score=108.69 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=51.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
-+++|++++|.|||||||||| ++++.+...+. .+.+++++....+....+.+++.+++..+....++.+.+...
T Consensus 187 ~i~~Ge~~~llGpnGSGKSTL-Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 187 IIKPSRMTLLLGPPSSGKTTL-LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred EEeCCeEEEEEcCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 689999999999999999999 66666665544 566777765432212234578887776555556777666543
No 405
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.50 E-value=3.2e-07 Score=108.02 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=93.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCC-----------CC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP-----------DC 181 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~-----------~~ 181 (427)
+++|+.++|+||+||||||| ++++..+..+..+.+++|+.+..+ ..+.+++++.+|+..++.. .+
T Consensus 1309 I~~GekiaIVGrTGsGKSTL-~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~s 1387 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSL-TLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS 1387 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCC
Confidence 78999999999999999999 666677777777889999886654 5677889999988765532 22
Q ss_pred HHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HH
Q 014268 182 GEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 236 (427)
Q Consensus 182 ~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~ 236 (427)
-+++.+.++. .+....- -+|..-.-. ...+++ |++|+...+|++.+. +.
T Consensus 1388 deei~~al~~a~l~~~I~~lp~---GLdt~v~e~-G~~LSg--GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq 1461 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPD---KLDHECAEG-GENLSV--GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ 1461 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCcc---CCCceecCC-CCcCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 3333333222 1111000 011111111 123444 777777778877653 22
Q ss_pred HHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.. ..++|||+++|-.+.+ . ++|.++.|..+...
T Consensus 1462 ~~l~~~-~~~~TvI~IAHRl~ti------------------~-~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1462 STIRTQ-FEDCTVLTIAHRLNTI------------------M-DYTRVIVLDKGEVA 1498 (1522)
T ss_pred HHHHHH-cCCCEEEEEecCHHHH------------------H-hCCEEEEEECCEEE
Confidence 222221 2489999999955432 2 37999998765543
No 406
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.50 E-value=4.2e-07 Score=78.80 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=43.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCC-HHHHHHhccccCccccCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD-PSLAETIGVKTENLLLAQPD 180 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~ 180 (427)
-|.+|+++-|.||+||||||| +..+.+..... .+.++++...... +...+++|+.+++-.+++..
T Consensus 24 Tia~GeivtlMGPSGcGKSTL-ls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTL-LSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred EecCCcEEEEECCCCccHHHH-HHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 366999999999999999999 66666654321 3456666543322 44567788877655444433
No 407
>PRK13409 putative ATPase RIL; Provisional
Probab=98.48 E-value=2.5e-07 Score=99.07 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~ 152 (427)
+++|++++|.|+||+||||| ++++.+..++..+.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTL-lkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTA-VKILSGELIPNLGDYE 131 (590)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHhCCccCCCcccc
Confidence 55999999999999999999 7888888776666554
No 408
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=2.4e-07 Score=100.36 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
-|.+|++++|.|||||||||| ++++.+...+..+.+++.
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTL-IKLLAGELAPVSGEIGLA 372 (638)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEEC
Confidence 467999999999999999999 777777766555555543
No 409
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.48 E-value=3.3e-07 Score=106.89 Aligned_cols=160 Identities=12% Similarity=0.018 Sum_probs=95.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhh----hcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ----RQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~----~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.||||+||||| ++++.+.. .+..+.++++++...+ ..+.+.+++.+++.......++.+.+..
T Consensus 83 ~i~~Ge~~aIlG~nGsGKSTL-Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 83 LIKPGELTVVLGRPGSGCSTL-LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence 678999999999999999999 66666653 2345677887754321 1223347888877656666677776655
Q ss_pred HHHHHhc---------C----C-----ccEEEEecccccC----CCCccCCcccchhHHHHHHHHHHH------------
Q 014268 189 VDTLIRS---------G----S-----VDVVVVDSVAALV----PKGELDGEMGDAHMAMQARLMSQA------------ 234 (427)
Q Consensus 189 ~~~l~~~---------~----~-----~~lvvIDsl~~l~----~~~~~~~~~g~~~~~~~ar~ls~~------------ 234 (427)
...+... . . ++.+-++...... ....+++ |++++...++++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vlllDEPTsg 239 (1394)
T TIGR00956 162 AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQCWDNATRG 239 (1394)
T ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEEEeCCCCC
Confidence 3221100 0 0 0011111111000 0134666 888888888877543
Q ss_pred ---------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccc
Q 014268 235 ---------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 235 ---------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
++.|.+.+++.|.|||+++|.... .+...+|.++.|+++....
T Consensus 240 LD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~-----------------~i~~l~D~v~~L~~G~iv~ 291 (1394)
T TIGR00956 240 LDSATALEFIRALKTSANILDTTPLVAIYQCSQ-----------------DAYELFDKVIVLYEGYQIY 291 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-----------------HHHHhhceEEEEeCCeEEE
Confidence 333333334468999999985321 3556789999998765433
No 410
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.47 E-value=2.3e-07 Score=108.30 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=55.0
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh---cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHH
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~---~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~ 183 (427)
|+.+.+ -+++|++++|.||||+||||| ++++.+... ...+.+++++.... ..+.+.+++.+|+..+....++.
T Consensus 779 L~~vs~--~i~~Ge~~aI~G~sGaGKSTL-L~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 779 LNNVDG--WVKPGTLTALMGASGAGKTTL-LNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred eeCCEE--EEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHH
Confidence 444433 689999999999999999999 777777665 34467888876542 34556788888765444455666
Q ss_pred HHHHH
Q 014268 184 QALSL 188 (427)
Q Consensus 184 ~~~~~ 188 (427)
+.+..
T Consensus 855 E~L~~ 859 (1394)
T TIGR00956 855 ESLRF 859 (1394)
T ss_pred HHHHH
Confidence 65543
No 411
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.8e-06 Score=80.73 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC----CHHHHHHhcccc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKT 171 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~----~~~~~~~ig~~~ 171 (427)
-+++|+-..|.|+|||||||| ++++.....+..+.+.+-++..- ...+.+++|++.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTL-L~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTL-LSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112 (257)
T ss_pred eecCCCcEEEECCCCCCHHHH-HHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence 467999999999999999999 78877776665554444433211 156778888774
No 412
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.44 E-value=8.8e-07 Score=79.82 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccc----cCccccC-CCCCHHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLLLA-QPDCGEQALSLVDTLIR 194 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~----~~~l~~~-~~~~~~~~~~~~~~l~~ 194 (427)
.++.|.|+||||||+||..++... +.+++|+.+....+..+.+++... +..+... .|.... ..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~---~~i~~~-- 73 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLA---ELLRAD-- 73 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHH---HHHHhh--
Confidence 478999999999999999987654 446889988777776555544222 1222111 122222 222221
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql 255 (427)
..+.++|+||++..+.. ..+.. .+ ...+...+..+...+++.++|+|+++..
T Consensus 74 ~~~~~~VlID~Lt~~~~-n~l~~--~~------~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 74 AAPGRCVLVDCLTTWVT-NLLFE--EG------EEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred cCCCCEEEehhHHHHHH-HHhcc--cc------hHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 13466899999998863 11110 00 0112234555666666779998888753
No 413
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.44 E-value=8.2e-07 Score=103.97 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe-CCCCC--C-HHHHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is-~E~~~--~-~~~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|++||||||| ++++.++..+..+.++++ +.... + ..+.+.+|+++|+..++. .++.+.+.
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~ 481 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTI-LKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIK 481 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHH
Confidence 478999999999999999999 788888877777888884 33222 2 345667999988766554 35554443
No 414
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=98.44 E-value=3.8e-08 Score=96.50 Aligned_cols=312 Identities=24% Similarity=0.228 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh-
Q 014268 65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA- 143 (427)
Q Consensus 65 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~- 143 (427)
...++..++++++..++ ...+..........+..+++|.-..+.-++.+|++.+-.++..++--+||++.+++....+
T Consensus 6 ~~~~~~~al~~~~~~~~-~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~~ 84 (326)
T KOG1433|consen 6 KRLALQKALEEIGLSPA-PVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPML 84 (326)
T ss_pred HHHHhhHHHHhcccCcc-chhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHHH
Confidence 34466777777765433 2222222223455688899998888888887899999999999999999999999998874
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH-hcCCccEEEEecccccC--CCCccCCccc
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-RSGSVDVVVVDSVAALV--PKGELDGEMG 220 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~-~~~~~~lvvIDsl~~l~--~~~~~~~~~g 220 (427)
.+....+.+.+++...+..+..-++...-...+.+|.+....+.....+. ..+..++++||+..... +..++..+.+
T Consensus 85 ~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~ 164 (326)
T KOG1433|consen 85 QLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSG 164 (326)
T ss_pred HhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhh
Confidence 55667788888888888888877777777788888888776665433332 45678999999999533 2233333333
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCccc
Q 014268 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEET 299 (427)
Q Consensus 221 ~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~ 299 (427)
...+....+.+.....+.-..+.......++++|.+..+... .+........+| ..++.+..+.....-...+...+.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~~la~~ 243 (326)
T KOG1433|consen 165 LRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLKKLADE 243 (326)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccccccc-ccchHHHHHHHHHHHHHHHHHHHh
Confidence 332222222222232222222221222224444443221110 011111222333 455555544333322222333333
Q ss_pred ccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCcccccHHHHHHHHhhCHHHHHH
Q 014268 300 IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFRGKEAFKQFLVENESVREE 379 (427)
Q Consensus 300 ~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~e 379 (427)
.|..+ |.+|...++.+.+ +.|+. .....+......+.++.+.|.|| .+++...++.....+|.+++..++.
T Consensus 244 ~g~~v---vitn~v~~~~d~~---~~f~~--~~~~~~~~~~~~H~~~tr~~~~~-~~g~~~~~k~~~s~~l~e~~~~~~i 314 (326)
T KOG1433|consen 244 FGVAV---VITNQVTAQVDGA---IMFGS--DPKKPIGGNIWAHAVTTRLGLRK-GKGERRICKIADSPCLPEAEAVFAI 314 (326)
T ss_pred cCceE---EEecccccccccc---cccCc--ccccccccchHHHHHHHHHHHHh-ccccchhhhhhcCCCCCcchhHHHH
Confidence 45443 8899988876555 56554 23333344444455555677788 6777778999989999999999988
Q ss_pred HHHHHHHH
Q 014268 380 LVIKLREK 387 (427)
Q Consensus 380 l~~~i~~~ 387 (427)
+...+...
T Consensus 315 ~~~g~~~~ 322 (326)
T KOG1433|consen 315 TEDGISDQ 322 (326)
T ss_pred Hhhhhhhh
Confidence 88777654
No 415
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=5.4e-07 Score=96.84 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=56.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc---CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~---~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
=+.+|++++|.||+||||||| ++++++-... -.+.+.++++....+.+.+..|++.|+-.+....|++|.+..
T Consensus 52 ~~~~Gel~AimG~SGsGKtTL-L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f 127 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTL-LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRF 127 (613)
T ss_pred EEecCeEEEEECCCCCCHHHH-HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHH
Confidence 688999999999999999999 5555554432 357899999777667788888999887766666666665543
No 416
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.43 E-value=7.9e-07 Score=104.09 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------------------------------------------------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------------------------------------------------ 146 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------------------------------------------------ 146 (427)
-+++|+.++|+|++||||||| ++++..+..+
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl-~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTV-MSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGE 1268 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 378999999999999999999 6777776654
Q ss_pred ------CceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 147 ------GGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 147 ------~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
..+.+++++....+ ..+.+.+++++|+..++
T Consensus 1269 ~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265 1269 DSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308 (1466)
T ss_pred ccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc
Confidence 36778888876544 56778899999876655
No 417
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.42 E-value=5.2e-07 Score=84.30 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE-EeC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF-IDA 155 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~-is~ 155 (427)
|++|++++|.|+||+||||| ++++.++.++..+.++ +..
T Consensus 10 i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~~~sG~i~~~~~ 49 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTL-TRLLCGLDAPDEGDFIGLRG 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCccCCCCCEEEecC
Confidence 67999999999999999999 7777777665555444 444
No 418
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.41 E-value=4.6e-07 Score=98.50 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
-+++|++++|.|+||+||||| ++++.+..++.++.++++
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTL-l~lL~Gl~~~~~G~i~~~ 512 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSL-FRILGELWPVYGGRLTKP 512 (659)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEeec
Confidence 367999999999999999999 677777766555555554
No 419
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=9.4e-07 Score=95.72 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-|++|++++|.|+|||||||| ++++.+...+..+.++++.
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTL-LkiL~G~~~pd~G~I~~~~ 62 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTL-LALLKNEISADGGSYTFPG 62 (638)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecC
Confidence 467999999999999999999 7888887766666666654
No 420
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.39 E-value=9.1e-07 Score=104.06 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=48.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~ 178 (427)
|++|+.++|+|++||||||| ++++.++.. ..+.+++|+.+... ..+.+++++.+|+..++.
T Consensus 1242 I~~GekvaIvGrSGsGKSTL-l~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTL-LSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS 1305 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc
Confidence 78999999999999999999 455555544 56788999876554 457788999998876664
No 421
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.39 E-value=2.4e-06 Score=86.57 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=53.7
Q ss_pred ccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCcc
Q 014268 101 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL 174 (427)
Q Consensus 101 ~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l 174 (427)
.+|-+-|-.+-= -+++|+.+.|+||+|+||||+ +.+...+-.-..+++-||+.+... ..+...+|++||+-
T Consensus 548 ~p~k~vl~disF--~v~pGktvAlVG~SGaGKSTi-mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 548 DPGKPVLSDISF--TVQPGKTVALVGPSGAGKSTI-MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT 621 (790)
T ss_pred CCCCceeecceE--EecCCcEEEEECCCCCchhHH-HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence 344444433322 478999999999999999999 777777766677899999987765 45677899998753
No 422
>PLN03073 ABC transporter F family; Provisional
Probab=98.38 E-value=5.9e-07 Score=98.13 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=30.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
-|++|++++|.|+|||||||| ++++.+..++..+.+++
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTL-Lk~L~Gll~p~~G~I~~ 568 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTI-LKLISGELQPSSGTVFR 568 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCceEEE
Confidence 478999999999999999999 77777776655454444
No 423
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.37 E-value=1.9e-06 Score=93.29 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++|++++|.|+|||||||| ++++.+...+..+.++++.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTL-LriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTL-MKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCeEEEeCC
Confidence 467999999999999999999 7888888776666666654
No 424
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.37 E-value=2.5e-07 Score=79.73 Aligned_cols=69 Identities=26% Similarity=0.367 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|+||+||||| ++++.+...+..+.++++...... ......+++.+++..+....++.+.
T Consensus 8 i~~g~~~~i~G~nGsGKStL-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTL-LKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EETTSEEEEEESTTSSHHHH-HHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred EcCCCEEEEEccCCCccccc-eeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66999999999999999999 677777777778888998776655 4556778888888666666655543
No 425
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.36 E-value=6.3e-06 Score=77.13 Aligned_cols=156 Identities=15% Similarity=0.022 Sum_probs=83.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH-hcCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-RSGS 197 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~-~~~~ 197 (427)
...+.|+|+||+||||+|.++ .+..++++.+........ .-.+ +-..+..+.+.+.+.+.+..+. ....
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~-------~~~~~~~~~d~~~~~l~g-~~~~--~v~~~d~~~~~~~~~d~l~~~~~~~~~ 81 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL-------PGKTLVLSFDMSSKVLIG-DENV--DIADHDDMPPIQAMVEFYVMQNIQAVK 81 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc-------CCCCEEEeccccchhccC-CCCC--ceeecCCCCCHHHHHHHHHHHHhcccc
Confidence 467999999999999997766 235677777664332110 0011 1122234445666666655432 1356
Q ss_pred ccEEEEecccccCCC-------CccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCC--Ce
Q 014268 198 VDVVVVDSVAALVPK-------GELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGG--PT 268 (427)
Q Consensus 198 ~~lvvIDsl~~l~~~-------~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~--~~ 268 (427)
++.||||++..+... ..-++.+..+..+.... .+..+.+.+...+++||+++|....-.....+. ..
T Consensus 82 ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~----~fl~~l~~L~~~g~nII~tAhe~~~~~~de~G~~~~r 157 (220)
T TIGR01618 82 YDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDL----WFLDLLTVLKESNKNIYATAWELTNQSSGESGQIYNR 157 (220)
T ss_pred CCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHH----HHHHHHHHHHhCCCcEEEEEeeccccccCCCCCCcce
Confidence 899999999977531 01111111111223333 333444444557999999999854211100111 11
Q ss_pred eeccC----CceeeeecceEEEEE
Q 014268 269 EVTCG----GNALKFYASVRLNIK 288 (427)
Q Consensus 269 ~~~~g----G~~ie~~ad~vi~L~ 288 (427)
..|.. .+.+--.+|+|..+.
T Consensus 158 ~~P~i~~K~~n~l~G~~DvV~rl~ 181 (220)
T TIGR01618 158 YQPDIREKVLNAFLGLTDVVGRIV 181 (220)
T ss_pred echhhhhhHHHhhcccccEEEEEE
Confidence 22211 224666789988775
No 426
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=4.3e-06 Score=73.40 Aligned_cols=132 Identities=18% Similarity=0.273 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC-----CCC----HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-----ALD----PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~-----~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+.|+.+++.||+|+|||+| +.....+..+..+.+.|.... ... ..+.+.+|++++...+....++-+.+
T Consensus 25 ~~~getlvllgpsgagkssl-lr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl 103 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL 103 (242)
T ss_pred CCCCCEEEEECCCCCchHHH-HHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence 67899999999999999999 666665555555555553321 111 34667789998876555444433221
Q ss_pred -H---------------HHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH-----------------
Q 014268 187 -S---------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ----------------- 233 (427)
Q Consensus 187 -~---------------~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~----------------- 233 (427)
+ ....+++.-+ +..+..-+| -.+++ |++|+...+|++..
T Consensus 104 ieap~kv~gl~~~qa~~~a~ellkrlr-----l~~~adr~p-lhlsg--gqqqrvaiaralmmkpqvllfdeptaaldpe 175 (242)
T COG4161 104 IEAPCRVLGLSKDQALARAEKLLKRLR-----LKPYADRYP-LHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred HhhhHHHhCCCHHHHHHHHHHHHHHhc-----cccccccCc-eeccc--chhhhHHHHHHHhcCCcEEeecCcccccCHH
Confidence 1 1111221111 111122221 23344 66667666666432
Q ss_pred ---HHHHHHHHhhcCCcEEEEEecCC
Q 014268 234 ---ALRKLSHSLSLSQTILIFINQVR 256 (427)
Q Consensus 234 ---~L~~L~~~l~~~~~tVI~isql~ 256 (427)
.+-.+.+++...|+|-++++|-.
T Consensus 176 itaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 176 ITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 26677788888999999999944
No 427
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=4.9e-06 Score=93.06 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=98.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCC------------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------ 179 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~------------ 179 (427)
-+++|+.++|+||+||||||. ..++.....+..+.+.+|+.+..+ .-+.++++++.|++.++..
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTv-I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTV-ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 378999999999999999999 888888888888999999887666 5677889998876654432
Q ss_pred CCHHHHHHHHHH-----HHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 180 DCGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 180 ~~~~~~~~~~~~-----l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
.+.+++.+.++. ++..-.-+ .|..-.-. ..+++| |++||...||++.+.
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~G---yDT~vGer-G~QLSG--GQKQRIAIARAilRnPkILLLDEATSALDseSErv 1164 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQG---YDTRVGER-GVQLSG--GQKQRIAIARAILRNPKILLLDEATSALDSESERV 1164 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCc---ccCccCcc-cCcCCc--hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHH
Confidence 234444433221 11110000 11111111 245555 777777777776643
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
+..-...+ ..|.|.|++.|-..-+ +-||.+..+.++....+|+
T Consensus 1165 VQeALd~a-~~gRT~IvIAHRLSTI-------------------qnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1165 VQEALDRA-MEGRTTIVIAHRLSTI-------------------QNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHHHHHHh-hcCCcEEEEecchhhh-------------------hcCCEEEEEECCEEEeccc
Confidence 22222222 2478888888855432 3489999998877665553
No 428
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.30 E-value=2.5e-06 Score=95.53 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=105.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
.+++|++.++.|+||+||||+ .+++.+..++..+.+++.+..... ....+.+|+.||.-.+.+..|..|.+....
T Consensus 587 ~V~~gecfgLLG~NGAGKtT~-f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 587 AVPPGECFGLLGVNGAGKTTT-FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred EecCCceEEEecCCCCCchhh-HHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHH
Confidence 789999999999999999999 888888888888889986654432 236778999998766555556555543322
Q ss_pred HH---------------H-----------------------------hcCCccEEEEecccccCCCCccCCcccchhHHH
Q 014268 191 TL---------------I-----------------------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 226 (427)
Q Consensus 191 ~l---------------~-----------------------------~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~ 226 (427)
++ + --+.+.+|.+|....-.. .
T Consensus 666 rlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmD--------------P 731 (885)
T KOG0059|consen 666 RLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD--------------P 731 (885)
T ss_pred HHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC--------------H
Confidence 11 0 123578888887544321 0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEE
Q 014268 227 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 306 (427)
Q Consensus 227 ~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l 306 (427)
.+| +.+..+...+++.+..||++||.+++. |+.||.+..|..+....-|. .
T Consensus 732 ~ar---r~lW~ii~~~~k~g~aiiLTSHsMeE~------------------EaLCtR~aImv~G~l~ciGs--------~ 782 (885)
T KOG0059|consen 732 KAR---RHLWDIIARLRKNGKAIILTSHSMEEA------------------EALCTRTAIMVIGQLRCIGS--------P 782 (885)
T ss_pred HHH---HHHHHHHHHHHhcCCEEEEEcCCHHHH------------------HHHhhhhheeecCeeEEecC--------h
Confidence 111 345555555555566999999988764 44566665555544333222 1
Q ss_pred EEeecCCCCCCCeeEEEEEe
Q 014268 307 KIVKNKLAPPFKTAQFELEF 326 (427)
Q Consensus 307 ~i~K~R~g~~~~~~~~~i~~ 326 (427)
.-.|+|+|.- ..+++..
T Consensus 783 q~LKsrfG~g---y~l~~~~ 799 (885)
T KOG0059|consen 783 QELKSRYGSG---YTLTVRI 799 (885)
T ss_pred HHHHhhcCCc---EEEEEEE
Confidence 2357777654 4455543
No 429
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.30 E-value=1.1e-05 Score=72.36 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTE 172 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~ 172 (427)
+.+|+.++|.|.||||||||| .++.+...+.++-+.|+.+...- ..+++.+.+.++
T Consensus 36 L~~~QTlaiIG~NGSGKSTLa-kMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQ 94 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHH-HHHhcccCCCCceEEECCccccccchHhhhhheeeeec
Confidence 558999999999999999995 55566666666777777765433 334555555443
No 430
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.28 E-value=2.9e-06 Score=81.60 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=24.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
.||.|.+++|+|.+|||||||+..++.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l~ 43 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHHH
Confidence 488999999999999999999876653
No 431
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=5.5e-06 Score=73.63 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=35.1
Q ss_pred CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 103 G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
|+.+.+.- +.||++..|.|++|||||||...+...+....+.+.|...
T Consensus 21 gc~~vsF~-----l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 21 GCRDVSFD-----LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred Ccccccee-----ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 55555553 4599999999999999999955555556655566777653
No 432
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.25 E-value=7e-06 Score=75.80 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=21.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+++| +++|.||||+||||| +.++..+.
T Consensus 20 ~~~g-~~~i~G~nGsGKStl-l~al~~l~ 46 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNI-IDAIRWVL 46 (197)
T ss_pred cCCC-cEEEECCCCCCHHHH-HHHHHHHh
Confidence 5578 999999999999999 45544443
No 433
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.19 E-value=1.1e-05 Score=80.40 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=43.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCCCCC---HH----HHHHhccccCcccc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALD---PS----LAETIGVKTENLLL 176 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~~~~---~~----~~~~ig~~~~~l~~ 176 (427)
+.+|+.+.|+|++|||||..|+.++..+..+ ..+.+.|++++... +. +-.++++.+++...
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMt 104 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMT 104 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccc
Confidence 5699999999999999999999888877653 34577788876543 22 22346676665543
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.18 E-value=9.2e-06 Score=83.60 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=48.1
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
..+.||+..+|.++. +.+|+.+.|.|++|+||||| ++++.+....+.+++.+.+|...+
T Consensus 140 ~~l~tg~~vid~l~~---i~~Gq~i~I~G~sG~GKStL-l~~I~~~~~~~~gvI~~~Gerg~e 198 (438)
T PRK07721 140 EPMEVGVRAIDSLLT---VGKGQRVGIFAGSGVGKSTL-MGMIARNTSADLNVIALIGERGRE 198 (438)
T ss_pred cccccchhhhheeee---ecCCcEEEEECCCCCCHHHH-HHHHhcccCCCeEEEEEEecCCcc
Confidence 368899999999975 88999999999999999999 566666666666777777666543
No 435
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.17 E-value=2.7e-05 Score=71.65 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
-++.|+++.|.|.||+||||| ++++.+...+..+-+++++.....
T Consensus 28 ~I~~g~FvtViGsNGAGKSTl-ln~iaG~l~~t~G~I~Idg~dVtk 72 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTL-LNAIAGDLKPTSGQILIDGVDVTK 72 (263)
T ss_pred eecCCceEEEEcCCCccHHHH-HHHhhCccccCCceEEECceeccc
Confidence 488999999999999999999 788888777888889999886544
No 436
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.16 E-value=1.7e-05 Score=73.31 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+..|++++|.||||+|||||+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3467999999999999999966665443
No 437
>PLN03073 ABC transporter F family; Provisional
Probab=98.15 E-value=3.6e-06 Score=92.07 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=30.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh----hhcCceEEEEeCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA----QRQGGYCVFIDAE 156 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~----~~~~~~vv~is~E 156 (427)
-|.+|+.++|+|+||+||||| ++++.+. .+.++.+.|+..+
T Consensus 199 ~i~~Ge~~gLvG~NGsGKSTL-Lr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 199 TLAFGRHYGLVGRNGTGKTTF-LRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCCCCEEEEEecc
Confidence 378999999999999999999 6666542 2234556676544
No 438
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=3.2e-05 Score=88.46 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=53.7
Q ss_pred hhHHhhcCCC----CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 106 ALDIALGTGG----LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 106 ~LD~~l~~GG----i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+|+.+|. | |++|+-++|+||.|+|||||+ +..-.+..+..+.+.||+-+... ..+.+++++.||+..++
T Consensus 1151 ~lp~VLk--~is~~I~p~eKVGIVGRTGaGKSSL~-~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1151 NLPLVLK--GISFTIKPGEKVGIVGRTGAGKSSLI-LALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred CCcchhc--CceEEEcCCceEEEeCCCCCCHHHHH-HHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence 4555665 4 689999999999999999994 45555555567889999988766 57788899998876544
No 439
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.13 E-value=6.3e-06 Score=97.09 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++|++++|.|++||||||| ++++.+...+..+.+++++
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTL-l~~l~G~~~~~~G~i~~~g 487 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSL-LMMIMGELEPSEGKIKHSG 487 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECC
Confidence 367999999999999999999 6777777666556666654
No 440
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=4e-05 Score=65.23 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHH-HHhccccCccccCCCCCHHHHHHHHHHHHhcC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA-ETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~-~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 196 (427)
.+..+.|.|+||+|||+|+..++..+...+..++|++.......... ...... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence 46789999999999999988888887766677888876543321110 000000 111111222334
Q ss_pred CccEEEEecccccC
Q 014268 197 SVDVVVVDSVAALV 210 (427)
Q Consensus 197 ~~~lvvIDsl~~l~ 210 (427)
...++++|.+..+.
T Consensus 84 ~~~~lilDe~~~~~ 97 (151)
T cd00009 84 KPGVLFIDEIDSLS 97 (151)
T ss_pred CCeEEEEeChhhhh
Confidence 67899999998874
No 441
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.4e-05 Score=69.39 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=74.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC-------CH----HHHHHhccccCccccCCCCC--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DP----SLAETIGVKTENLLLAQPDC-- 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~-------~~----~~~~~ig~~~~~l~~~~~~~-- 181 (427)
-+..|+++++.||+|+|||||+..+-.+. .++.+-+++--+... .+ .+.+.+||+.|-+.+....+
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL 111 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL 111 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence 46789999999999999999954444444 455566666544321 11 23455888877555443221
Q ss_pred -------------HHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHH----------------
Q 014268 182 -------------GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------- 232 (427)
Q Consensus 182 -------------~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls---------------- 232 (427)
.+........++..-++. .-+=.+. ...++| |++|+.+.+|.+.
T Consensus 112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnlp----erLW~La-PaTFSG--GEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 112 DVVAEPLLARGVPREVARAKAADLLTRLNLP----ERLWSLA-PATFSG--GEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----HHHhcCC-CcccCC--chheehhhhhhhhccCceEEecCCccccc
Confidence 222222333333222211 1111222 233444 5555555555432
Q ss_pred ----HHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 233 ----QALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 233 ----~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
+..-.|..++|..|+++|-+=|...
T Consensus 185 a~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 185 ATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 2266777788888999998887543
No 442
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.10 E-value=2e-05 Score=82.95 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=27.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~ 146 (427)
-+.+|+.++|+|+||+||||| ++++.+...+
T Consensus 25 ~~~~G~riGLvG~NGaGKSTL-LkilaG~~~~ 55 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTL-LKILAGELEP 55 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHH-HHHHcCCCcC
Confidence 577999999999999999999 7888776654
No 443
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.08 E-value=7.6e-05 Score=68.85 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHH-HHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQAL-SLVDTL 192 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~-~~~~~l 192 (427)
.++.++||+|+||||.+-.++..+...+.++.+++.....- +.+++.+|++....... .+..+++ +.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~--~~~~~~~~~~l~~- 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTE--SDPAEIAREALEK- 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTT--SCHHHHHHHHHHH-
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcc--hhhHHHHHHHHHH-
Confidence 37899999999999999999999987788899998764433 35677788764332211 1233333 33333
Q ss_pred HhcCCccEEEEecccccC
Q 014268 193 IRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~ 210 (427)
....+.++|+||......
T Consensus 79 ~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHTTSSEEEEEE-SSSS
T ss_pred HhhcCCCEEEEecCCcch
Confidence 344568999999976553
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.07 E-value=3e-05 Score=75.01 Aligned_cols=113 Identities=23% Similarity=0.168 Sum_probs=66.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHH--HHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQ--ALSLVDTLI 193 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~--~~~~~~~l~ 193 (427)
.-++|+|+||+||||| ++.+.....++.+.+++++..... ..++..+++.++.-...+....+. -..-+..++
T Consensus 112 ~~~~i~g~~g~GKttl-~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL-LRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHH-HHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 5789999999999999 666667766777778887765431 345555555555432221111110 011233344
Q ss_pred hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
....++++++|.+... ..+...+.. +. .|++||+++|...
T Consensus 191 ~~~~P~villDE~~~~-------------------e~~~~l~~~----~~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 191 RSMSPDVIVVDEIGRE-------------------EDVEALLEA----LH-AGVSIIATAHGRD 230 (270)
T ss_pred HhCCCCEEEEeCCCcH-------------------HHHHHHHHH----Hh-CCCEEEEEechhH
Confidence 4568999999994211 111122222 22 4999999999644
No 445
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=77.48 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
|.+|+++-|.|.|||||||| ..+..++.++..+-++++++-..
T Consensus 346 ikrGelvFliG~NGsGKST~-~~LLtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred EecCcEEEEECCCCCcHHHH-HHHHhcccCCCCCceeECCccCC
Confidence 67999999999999999999 55667777777788898887543
No 446
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.03 E-value=6.3e-05 Score=63.68 Aligned_cols=113 Identities=22% Similarity=0.260 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEE
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVV 201 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lv 201 (427)
++|.||||+|||+++..++..+ +..++.++....... ........+...+........+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl 62 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVL 62 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc---------------cccccccccccccccccccccceee
Confidence 5799999999999988887776 345677765422110 1111223333334433222237899
Q ss_pred EEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhc--CCcEEEEEecCCccc
Q 014268 202 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL--SQTILIFINQVRAKL 259 (427)
Q Consensus 202 vIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~--~~~tVI~isql~~~v 259 (427)
+||.+..+.+.. ... .. .....+...|..+...... .++.||++++..+.+
T Consensus 63 ~iDe~d~l~~~~--~~~-~~----~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 63 FIDEIDKLFPKS--QPS-SS----SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp EEETGGGTSHHC--STS-SS----HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred eeccchhccccc--ccc-cc----cccccccceeeecccccccccccceeEEeeCChhhC
Confidence 999999988533 110 11 1122333333333333333 458899988875554
No 447
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.02 E-value=2.1e-05 Score=92.98 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++|++++|.|++||||||| ++++.+...+..+.+++++
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTL-l~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSL-LSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCccCCcEEEECC
Confidence 378999999999999999999 6666666555555566653
No 448
>PLN03130 ABC transporter C family member; Provisional
Probab=97.98 E-value=1.7e-05 Score=94.01 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~ 146 (427)
+++|++++|+|++|||||||+..++......
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPR 670 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccC
Confidence 7899999999999999999954444444433
No 449
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.6e-05 Score=75.72 Aligned_cols=59 Identities=27% Similarity=0.473 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL 175 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~ 175 (427)
+|+|..+.+.|++|+||||+ +.++..+...+.+++.+++.+..+ ..+.+.+|++|++--
T Consensus 286 i~~g~tvAiVg~SG~gKsTI-~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv 347 (497)
T COG5265 286 IPLGKTVAIVGESGAGKSTI-LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV 347 (497)
T ss_pred ccCccEEEEEeCCCCcHHHH-HHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce
Confidence 68999999999999999999 888888887788999999887665 456677999988643
No 450
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.96 E-value=3.1e-05 Score=72.99 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=21.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~i 139 (427)
+++|++++|+|+||||||||+...
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~~~~ 41 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHH
Confidence 679999999999999999996333
No 451
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.94 E-value=0.00018 Score=64.63 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH------HHHHhccccCccccCCCCCHHHHHH-HHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALS-LVDTLI 193 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~------~~~~ig~~~~~l~~~~~~~~~~~~~-~~~~l~ 193 (427)
++++.|+||+||||++.+++..+...+..+++++........ ++...+++... ...+....+++. .+.. .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--EGEGKDPVSIAKRAIEH-A 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--cCCCCCHHHHHHHHHHH-H
Confidence 688999999999999999999888777889999876432211 12233332111 112223333332 2222 2
Q ss_pred hcCCccEEEEecccccC
Q 014268 194 RSGSVDVVVVDSVAALV 210 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~ 210 (427)
...+.++++||......
T Consensus 79 ~~~~~d~viiDt~g~~~ 95 (173)
T cd03115 79 REENFDVVIVDTAGRLQ 95 (173)
T ss_pred HhCCCCEEEEECcccch
Confidence 34568899999866553
No 452
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.93 E-value=4.8e-05 Score=72.25 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia 140 (427)
|++++|.||||+|||||+..+.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 6799999999999999954444
No 453
>PTZ00243 ABC transporter; Provisional
Probab=97.93 E-value=2.1e-05 Score=92.98 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=29.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
+++|++++|.|++||||||| ++++.+...+..+.+++
T Consensus 683 i~~G~~~~IiG~nGsGKSTL-L~~i~G~~~~~~G~i~~ 719 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTL-LQSLLSQFEISEGRVWA 719 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEE
Confidence 67999999999999999999 66666666554454544
No 454
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.92 E-value=4.8e-05 Score=70.36 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+|++++|.|+||+|||||+..++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHH
Confidence 56999999999999999966665443
No 455
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00015 Score=70.52 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCH-----HHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~-----~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
...|+|++++|||+++.++....... ..+|+++..-...+. .+...+|++.. ...+.......+
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~-----~~~~~~~~~~~~ 137 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR-----PRDRVAKLEQQV 137 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC-----CCCCHHHHHHHH
Confidence 38899999999999988888755321 136888776444441 34455665532 223455555556
Q ss_pred HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Q 014268 190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 252 (427)
Q Consensus 190 ~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~i 252 (427)
..+++..+++++|||.+..+.. |.. .+++++...|+.|..+ +.+++|++
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLa--------Gs~---~~qr~~Ln~LK~L~Ne---L~ipiV~v 186 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLA--------GSY---RKQREFLNALKFLGNE---LQIPIVGV 186 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhc--------ccH---HHHHHHHHHHHHHhhc---cCCCeEEe
Confidence 6777888999999999998763 222 4567777888888766 59999987
No 456
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.89 E-value=0.00027 Score=70.10 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
.+|.+++|+|+||+||||++.+++..+...++.|++++...... ..++.+.++..-... ..........+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~-~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK-EGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC-CCCCHHHHHHHHHH
Confidence 36899999999999999999999998887777888887643211 134444443311000 01111112222222
Q ss_pred HHHhcCCccEEEEecccccC
Q 014268 191 TLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~ 210 (427)
.. ...+.++|+||....+.
T Consensus 191 ~~-~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 191 AA-KARGIDVLIIDTAGRLH 209 (318)
T ss_pred HH-HhCCCCEEEEeCCCCCc
Confidence 22 23568999999988765
No 457
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.88 E-value=2.2e-05 Score=82.66 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc---------CceEEEEeCCCCC---CH---HHH---------------
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---------GGYCVFIDAEHAL---DP---SLA--------------- 164 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~---------~~~vv~is~E~~~---~~---~~~--------------- 164 (427)
.+.+|+-++|.||||+||||| ++++.+...+ +-.+.||+-+... +. .+.
T Consensus 344 ~i~~g~riaiiG~NG~GKSTL-lk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~ 422 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTL-LKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAY 422 (530)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHH
Confidence 688999999999999999999 6666443321 1236677654321 10 001
Q ss_pred -HHhccccCccc-cCCCCCHHH-HHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014268 165 -ETIGVKTENLL-LAQPDCGEQ-ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (427)
Q Consensus 165 -~~ig~~~~~l~-~~~~~~~~~-~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~ 241 (427)
.++++..+... -....+.-+ ..-.+.. +.-.++.++++|..+.... . ..+..|...
T Consensus 423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~-ll~~~pNvLiLDEPTNhLD----------i----------~s~~aLe~a 481 (530)
T COG0488 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAK-LLLQPPNLLLLDEPTNHLD----------I----------ESLEALEEA 481 (530)
T ss_pred HHHcCCChHHHhCchhhcCHhHHHHHHHHH-HhccCCCEEEEcCCCccCC----------H----------HHHHHHHHH
Confidence 11111111110 000112222 2222222 2234678888888776652 0 124445555
Q ss_pred hhcCCcEEEEEecCCcccc
Q 014268 242 LSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~ 260 (427)
+..+.-|||++||.+.-++
T Consensus 482 L~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 482 LLDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred HHhCCCeEEEEeCCHHHHH
Confidence 6668999999999876543
No 458
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00034 Score=70.61 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
+.+++|+|++|+||||++..++..+...+..+.+++.....- ..++..+|++. ....+...+...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-----~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-----IAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-----EecCCHHHHHHHHHHH
Confidence 469999999999999999999998887777888888753221 12333344332 1122445555555554
Q ss_pred HhcCCccEEEEecccccC
Q 014268 193 IRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~ 210 (427)
....+.++|+||......
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 333468999999877654
No 459
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.87 E-value=8.4e-05 Score=72.51 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-C-ceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-G-GYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~-~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+++.+++|+||+|+||||++..++..+... + ..|.+++.+.... ..+++.++++.. ...+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-----~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-----VARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----ccCCHHHHHHH
Confidence 468899999999999999999999888765 4 6899998774321 123444454431 11234445444
Q ss_pred HHHHHhcCCccEEEEecc
Q 014268 189 VDTLIRSGSVDVVVVDSV 206 (427)
Q Consensus 189 ~~~l~~~~~~~lvvIDsl 206 (427)
+..+ ...++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 4443 35799999964
No 460
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.86 E-value=0.00036 Score=67.65 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCH-HHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCG-EQALSLVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~-~~~~~~~~ 190 (427)
++.++.++|+||+||||++.+++..+...+..|++++...... ..+++..++..-. ....... ......+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~--~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIK--QKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEe--CCCCCCHHHHHHHHHH
Confidence 5679999999999999999999998887788899998764221 2245555643110 0111122 22223333
Q ss_pred HHHhcCCccEEEEecccccC
Q 014268 191 TLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~ 210 (427)
.. ...+.++|+||....+.
T Consensus 149 ~~-~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 149 KA-KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HH-HHCCCCEEEEeCCCCCc
Confidence 22 24568999999887765
No 461
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=9.5e-05 Score=74.23 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+.+|.++.|+||+|+||||++..++..+...+..|.+++...... ..++..+++.. ....+..++...+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al 277 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV 277 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence 457999999999999999999999988877788899988763322 12333344421 1123456665555
Q ss_pred HHHHhcCCccEEEEecccccC
Q 014268 190 DTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 190 ~~l~~~~~~~lvvIDsl~~l~ 210 (427)
..+......++|+||......
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 554333568999999887764
No 462
>PLN03232 ABC transporter C family member; Provisional
Probab=97.83 E-value=2.9e-05 Score=91.72 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=24.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~ 146 (427)
+++|++++|+|++||||||| ++++.+...+
T Consensus 640 i~~Ge~vaIvG~sGSGKSTL-l~lLlG~~~~ 669 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSL-ISAMLGELSH 669 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCcc
Confidence 78999999999999999999 5555555443
No 463
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.82 E-value=8.5e-05 Score=68.61 Aligned_cols=31 Identities=45% Similarity=0.622 Sum_probs=23.2
Q ss_pred hhhHHhhcCCCCCCC-CEEEEEcCCCCCHHHHHHHHH
Q 014268 105 FALDIALGTGGLPKG-RVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G-~li~I~G~pGsGKTTLal~ia 140 (427)
..+|.-++ +| ++++|.||||+|||||+..++
T Consensus 18 ~~~~~~i~-----~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLG-----ENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEEC-----CCceEEEEECCCCCChHHHHHHHH
Confidence 34454444 66 589999999999999966555
No 464
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.0003 Score=72.44 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
.+|.++.|+||+|+||||++.+++..+. ..+..|.+++...... ..+++.++++.. ...+..++...
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-----~~~~~~~l~~~ 293 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-----VVYDPKELAKA 293 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----ccCCHHhHHHH
Confidence 3578999999999999999999998886 3467899998764211 123444554321 12233444444
Q ss_pred HHHHHhcCCccEEEEeccccc
Q 014268 189 VDTLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 189 ~~~l~~~~~~~lvvIDsl~~l 209 (427)
+..+ ...++|+||.....
T Consensus 294 l~~~---~~~DlVlIDt~G~~ 311 (424)
T PRK05703 294 LEQL---RDCDVILIDTAGRS 311 (424)
T ss_pred HHHh---CCCCEEEEeCCCCC
Confidence 4443 35899999987654
No 465
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.82 E-value=2.9e-05 Score=78.43 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=84.1
Q ss_pred cCchhhHHhhc-------CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce----------EEEEeCCCCCC--HH
Q 014268 102 TGSFALDIALG-------TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY----------CVFIDAEHALD--PS 162 (427)
Q Consensus 102 TG~~~LD~~l~-------~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~----------vv~is~E~~~~--~~ 162 (427)
-.+++|.+.+| .|.|..|+++++.||||.|||||+ .++++..+++.+ --|++.+.... ..
T Consensus 343 v~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFv-k~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 343 VEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFV-KLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred eecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHH-HHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 34555555444 477999999999999999999995 555555554322 12233332111 22
Q ss_pred HHHHhc--cc--cCccccCCCCCHHHHHHH-------------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHH
Q 014268 163 LAETIG--VK--TENLLLAQPDCGEQALSL-------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (427)
Q Consensus 163 ~~~~ig--~~--~~~l~~~~~~~~~~~~~~-------------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~ 225 (427)
+..... +. .-+..+..|...+.+++. .-...-....++.++|..++... .
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD---------v---- 488 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD---------V---- 488 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc---------H----
Confidence 222211 11 111123334444433321 11111234678999998877762 1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEE
Q 014268 226 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 288 (427)
Q Consensus 226 ~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~ 288 (427)
.+.-.+++.+|+++.. .+.+.+++.|..- .+.+.+|.+|.+.
T Consensus 489 EqR~~vakvIRR~~e~---~~kta~vVdHDi~------------------~~dyvsDr~ivF~ 530 (591)
T COG1245 489 EQRIIVAKVIRRFIEN---NEKTALVVDHDIY------------------MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHhh---cCceEEEEeccee------------------hhhhhhceEEEEe
Confidence 1222345667776655 6899999999432 3566777776654
No 466
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=9.8e-05 Score=64.96 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCce
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~ 149 (427)
-+.|.|+||+|||||++.++..+...+-.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 47899999999999999999888765533
No 467
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.80 E-value=9.5e-05 Score=68.61 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~i 139 (427)
+| +++|.|+||+|||||+..+
T Consensus 22 ~g-~~~i~G~NGsGKTTLl~ai 42 (204)
T cd03240 22 SP-LTLIVGQNGAGKTTIIEAL 42 (204)
T ss_pred CC-eEEEECCCCCCHHHHHHHH
Confidence 45 9999999999999995444
No 468
>PRK08727 hypothetical protein; Validated
Probab=97.79 E-value=0.0002 Score=67.91 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCc
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 198 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 198 (427)
...+.|+|++|+|||+|+..++..+...+..++|++.+.... .+...+..+ .+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~-----------------------~~~~~~~~l---~~~ 94 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG-----------------------RLRDALEAL---EGR 94 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh-----------------------hHHHHHHHH---hcC
Confidence 356999999999999998877777777778899987532110 111122222 357
Q ss_pred cEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 014268 199 DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (427)
Q Consensus 199 ~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql 255 (427)
++++||.++.+.. .. .... .+..+....++.+.+||++++.
T Consensus 95 dlLiIDDi~~l~~---------~~---~~~~----~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 95 SLVALDGLESIAG---------QR---EDEV----ALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred CEEEEeCcccccC---------Ch---HHHH----HHHHHHHHHHHcCCeEEEECCC
Confidence 8999999987752 11 0111 2233444445568889988773
No 469
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.79 E-value=7.2e-05 Score=71.52 Aligned_cols=102 Identities=23% Similarity=0.334 Sum_probs=58.0
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--Cce-EEEEeCCCCCC-HHHHHHh-cc-ccCccccCC
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGY-CVFIDAEHALD-PSLAETI-GV-KTENLLLAQ 178 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~-vv~is~E~~~~-~~~~~~i-g~-~~~~l~~~~ 178 (427)
..+|.++. +.+|+.++|.|++|+|||||+..++...... +.. ++++..+...+ ..+.+.+ .+ ....+.. .
T Consensus 5 ~~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~ 80 (249)
T cd01128 5 RVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-P 80 (249)
T ss_pred hheeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-C
Confidence 35676665 6699999999999999999987777666543 222 33335554444 2333333 11 1111110 1
Q ss_pred C----CCHHHHHHHHHHHHhcCCccEEEEecccccC
Q 014268 179 P----DCGEQALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 179 ~----~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
+ .....+...+..+...+.--++++|+++.+.
T Consensus 81 ~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 81 PERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence 1 0122333444444455666789999999764
No 470
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.78 E-value=0.00011 Score=75.64 Aligned_cols=110 Identities=20% Similarity=0.275 Sum_probs=65.2
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-H-HHHHHhccc-cCc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-P-SLAETIGVK-TEN 173 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~-~~~~~ig~~-~~~ 173 (427)
.+.+.||+..+|.++. +.+|+.+.|.|++|+||||| ++++.+.......++.+-++...+ . .+...++-. +.+
T Consensus 144 ~e~l~TGi~~iD~l~~---i~~Gq~~~I~G~sG~GKStL-l~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~ 219 (440)
T TIGR01026 144 REILSTGVRSIDGLLT---VGKGQRIGIFAGSGVGKSTL-LGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKR 219 (440)
T ss_pred cccccceeeeeeeccc---cCCCcEEEEECCCCCCHHHH-HHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccce
Confidence 3468999999999975 88999999999999999999 455555555554454444554433 1 121222211 122
Q ss_pred c-cc-CC--CCCHHHH------HHHHHHHHhcCCccEEEEecccccC
Q 014268 174 L-LL-AQ--PDCGEQA------LSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 174 l-~~-~~--~~~~~~~------~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
. .+ .. ....... +...+.+...+.--++++|+++.+.
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A 266 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFA 266 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHH
Confidence 1 11 11 1112222 2333444455656688899998653
No 471
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.77 E-value=2.6e-05 Score=79.99 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=46.1
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
...+.||+..+|.++ -+.+|+.+.|.|++|+||||| ++++.....+..+++.+.+|...+
T Consensus 146 ~~~l~TGi~aID~L~---~I~~Gqri~I~G~SGsGKTTL-L~~Ia~l~~pd~gvv~liGergre 205 (450)
T PRK06002 146 ETGLRTGVRVIDIFT---PLCAGQRIGIFAGSGVGKSTL-LAMLARADAFDTVVIALVGERGRE 205 (450)
T ss_pred eEEcCCCcEEeeeec---eecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCeeeeeecccCCcc
Confidence 346779999999876 489999999999999999999 566666655565666666554443
No 472
>PF13173 AAA_14: AAA domain
Probab=97.76 E-value=0.00019 Score=61.32 Aligned_cols=99 Identities=20% Similarity=0.292 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCc
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 198 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 198 (427)
+.+++|.|+.|+|||||+.+++.... ....++|++.+........ . .+ +.+.+.... ..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~-------------~---~~-~~~~~~~~~-~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA-------------D---PD-LLEYFLELI-KPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh-------------h---hh-hHHHHHHhh-ccCC
Confidence 57899999999999999999998876 4567899988754321110 0 00 122222221 1257
Q ss_pred cEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 199 DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 199 ~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
.+++||.+|.+.. ....++.+.... .++.||++.....
T Consensus 63 ~~i~iDEiq~~~~-------------------~~~~lk~l~d~~--~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 63 KYIFIDEIQYLPD-------------------WEDALKFLVDNG--PNIKIILTGSSSS 100 (128)
T ss_pred cEEEEehhhhhcc-------------------HHHHHHHHHHhc--cCceEEEEccchH
Confidence 8999999998851 113344444431 3688888866443
No 473
>PF05729 NACHT: NACHT domain
Probab=97.75 E-value=0.00029 Score=61.95 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=62.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcC------ceEEEEeCCCCCCHHHHHHhccccCccccC-CCCCHHHHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSLAETIGVKTENLLLA-QPDCGEQALSLVDTL 192 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~------~~vv~is~E~~~~~~~~~~ig~~~~~l~~~-~~~~~~~~~~~~~~l 192 (427)
+++.|.|+||+||||++.+++..+.... .-++|++............+ .+.... ..............+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSL----ADLLFDQLPESIAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchH----HHHHHHhhccchhhhHHHHHHH
Confidence 4789999999999999999998887643 12445555433321111000 000000 000111111122333
Q ss_pred HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEec
Q 014268 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isq 254 (427)
......-+++||.+-.+...... .....+...+..|.....-.++.+++++-
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~liit~r 128 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQS----------QERQRLLDLLSQLLPQALPPGVKLIITSR 128 (166)
T ss_pred HHcCCceEEEEechHhcccchhh----------hHHHHHHHHHHHHhhhccCCCCeEEEEEc
Confidence 34455668899999988731110 11122334455555442235778887764
No 474
>PRK08181 transposase; Validated
Probab=97.74 E-value=0.00015 Score=70.04 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 196 (427)
..+.-+.|+||||+|||.|+..++..+...+..|+|++... +...+.... ...+..+.+ ..+ .
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~-----L~~~l~~a~------~~~~~~~~l---~~l---~ 166 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----LVQKLQVAR------RELQLESAI---AKL---D 166 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH-----HHHHHHHHH------hCCcHHHHH---HHH---h
Confidence 46788999999999999999888888887888899987532 222221110 011222222 222 3
Q ss_pred CccEEEEecccccC
Q 014268 197 SVDVVVVDSVAALV 210 (427)
Q Consensus 197 ~~~lvvIDsl~~l~ 210 (427)
+++++|||.+....
T Consensus 167 ~~dLLIIDDlg~~~ 180 (269)
T PRK08181 167 KFDLLILDDLAYVT 180 (269)
T ss_pred cCCEEEEecccccc
Confidence 58999999998765
No 475
>PRK10867 signal recognition particle protein; Provisional
Probab=97.74 E-value=0.00037 Score=71.73 Aligned_cols=90 Identities=21% Similarity=0.209 Sum_probs=59.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
..++.++|++|+||||++.+++..+... +..|++++....... .++...|++.-.. ....+..++...+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~--~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS--GDGQDPVDIAKAALE 177 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec--CCCCCHHHHHHHHHH
Confidence 4799999999999999999999988877 788999988643321 2345555442111 112234444433333
Q ss_pred HHhcCCccEEEEecccccC
Q 014268 192 LIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l~ 210 (427)
.....+.++|+||....+.
T Consensus 178 ~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHhcCCCEEEEeCCCCcc
Confidence 3345578999999887664
No 476
>PRK14974 cell division protein FtsY; Provisional
Probab=97.74 E-value=0.00087 Score=66.84 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHH-HHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA-LSLVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~-~~~~~ 190 (427)
+..+++++|+||+||||++.+++..+...+..|++++...... +.++..+|+..-... .......+ ...+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~--~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHK--YGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceeccc--CCCCHHHHHHHHHH
Confidence 3579999999999999999999988777777888877653221 124455565432111 11122222 22222
Q ss_pred HHHhcCCccEEEEecccccC
Q 014268 191 TLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~ 210 (427)
. ....+.++|+||....+.
T Consensus 217 ~-~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 217 H-AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred H-HHhCCCCEEEEECCCccC
Confidence 2 233567899999988775
No 477
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00032 Score=71.47 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh-hhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA-QRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~-~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
..++.++.|+|++|+||||++.+++... ...+..|.+++.+.... ..++..+|++.. ...+....
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--------~~~~~~~l 291 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--------PVKDIKKF 291 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee--------ehHHHHHH
Confidence 4567899999999999999999999866 45577788888764221 123334454321 11122222
Q ss_pred HHHHHhcCCccEEEEeccccc
Q 014268 189 VDTLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 189 ~~~l~~~~~~~lvvIDsl~~l 209 (427)
... +...+.++|+||.....
T Consensus 292 ~~~-l~~~~~D~VLIDTaGr~ 311 (432)
T PRK12724 292 KET-LARDGSELILIDTAGYS 311 (432)
T ss_pred HHH-HHhCCCCEEEEeCCCCC
Confidence 222 23467899999984443
No 478
>PRK12377 putative replication protein; Provisional
Probab=97.73 E-value=0.00015 Score=69.26 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=64.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCcc
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (427)
..+.|.|+||+|||+||..++..+...+..|+|++...... .+.... ....+..+ .+..+ ..++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~-----~l~~~~-----~~~~~~~~---~l~~l---~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS-----RLHESY-----DNGQSGEK---FLQEL---CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH-----HHHHHH-----hccchHHH---HHHHh---cCCC
Confidence 56899999999999999999988887788899987653222 111100 01111222 23332 4689
Q ss_pred EEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 200 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 200 lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
++|||.+..... .. ... ..|..+...-.....|+|++|++.-
T Consensus 166 LLiIDDlg~~~~--------s~----~~~----~~l~~ii~~R~~~~~ptiitSNl~~ 207 (248)
T PRK12377 166 LLVLDEIGIQRE--------TK----NEQ----VVLNQIIDRRTASMRSVGMLTNLNH 207 (248)
T ss_pred EEEEcCCCCCCC--------CH----HHH----HHHHHHHHHHHhcCCCEEEEcCCCH
Confidence 999999977642 11 111 2344444443344678888887653
No 479
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.73 E-value=4.2e-05 Score=78.37 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~ 147 (427)
-+.+.||+..||.++. +.+|+.+.|.|++|+|||||+ +++.+....+
T Consensus 136 ~~~l~TGi~aID~ll~---I~~GQ~igI~G~sGaGKSTLl-~~I~g~~~~d 182 (434)
T PRK07196 136 DTPLDVGVNAINGLLT---IGKGQRVGLMAGSGVGKSVLL-GMITRYTQAD 182 (434)
T ss_pred ccccccceeeccceEe---EecceEEEEECCCCCCccHHH-HHHhcccCCC
Confidence 4678999999999975 889999999999999999994 5555555443
No 480
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=7.8e-05 Score=85.39 Aligned_cols=30 Identities=33% Similarity=0.669 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
+++|++++|+|+.|||||+|...++.++.+
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~ 573 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPK 573 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCccc
Confidence 789999999999999999996666666655
No 481
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.71 E-value=0.00022 Score=71.46 Aligned_cols=29 Identities=45% Similarity=0.686 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
+.+|+++.|.|.+||||||| +.++.+.+.
T Consensus 406 ikpGdvvaVvGqSGaGKttl-lRmi~G~~~ 434 (593)
T COG2401 406 IKPGDVVAVVGQSGAGKTTL-LRMILGAQK 434 (593)
T ss_pred ecCCCeEEEEecCCCCcchH-HHHHHHHhh
Confidence 67999999999999999999 777777764
No 482
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.71 E-value=0.00017 Score=73.58 Aligned_cols=123 Identities=20% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|++++.-+.|+||||+|||+||..++.... ...+.+... ......+| .. ...+..+-....
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~s----~l~~k~~g-----------e~-~~~lr~lf~~A~ 235 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVGS----EFVQKYLG-----------EG-PRMVRDVFRLAR 235 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEehH----HHHHHhcc-----------hh-HHHHHHHHHHHH
Confidence 788888899999999999999887776542 223333221 00111111 01 111111112233
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
...+.+++||.+..+.+.. .+...+.. ....+.+...+..+-..-...++.||++++....+
T Consensus 236 ~~~P~ILfIDEID~i~~~r-~~~~~~~d--~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKR-FDAQTGAD--REVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred hcCCeEEEEECHhhhcccc-ccccCCcc--HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 4678899999999886422 11111111 12223344444444332233577888888755543
No 483
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.70 E-value=5.9e-05 Score=70.38 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia 140 (427)
.+|++++|.|+||+|||||+..+.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhe
Confidence 458899999999999999954443
No 484
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=97.70 E-value=9.4e-05 Score=67.63 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=31.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
-+|.|+-+.++|.||+||||| |.+..+-..-+.+++.+-+..++
T Consensus 36 dlp~gsRcLlVGaNGaGKtTl-LKiLsGKhmv~~~~v~VlgrsaF 79 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTL-LKILSGKHMVGGGVVQVLGRSAF 79 (291)
T ss_pred ccCCCceEEEEecCCCchhhh-HHHhcCcccccCCeEEEcCcCcc
Confidence 488999999999999999999 67665544334455555444443
No 485
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.69 E-value=0.00028 Score=67.81 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=50.1
Q ss_pred CCCCCC-EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE-eCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 115 GLPKGR-VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 115 Gi~~G~-li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i-s~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++++. +++|.|+||+|||||+..++..+......++++ ....... ..++..+|+..+.. ........+...+
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~--~~~~~~~~l~~~l 115 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGR--DKAALLRELEDFL 115 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHH
Confidence 454544 899999999999999887776654322222222 2211111 13444455543221 0000112222333
Q ss_pred HHHHhcCCccEEEEecccccC
Q 014268 190 DTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 190 ~~l~~~~~~~lvvIDsl~~l~ 210 (427)
......++..+++||.++.+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHHhCCCCeEEEEECcccCC
Confidence 333445667799999988765
No 486
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.68 E-value=7.9e-05 Score=75.28 Aligned_cols=103 Identities=20% Similarity=0.290 Sum_probs=59.7
Q ss_pred chhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC---ceEEEEeCCCCCC-HHHHHHh-c-cccCccccC
Q 014268 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD-PSLAETI-G-VKTENLLLA 177 (427)
Q Consensus 104 ~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~---~~vv~is~E~~~~-~~~~~~i-g-~~~~~l~~~ 177 (427)
...+|-.+. +.+|+.++|+|++|+|||||+..++..+.... ..++++..|...+ ..+.+.+ + +....+..
T Consensus 156 ~R~id~~~p---ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~- 231 (415)
T TIGR00767 156 TRVLDLFAP---IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE- 231 (415)
T ss_pred eeeeeeEEE---eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC-
Confidence 334466664 67999999999999999999777776665431 2244455554444 2233332 2 11111111
Q ss_pred CCC----CHHHHHHHHHHHHhcCCccEEEEecccccC
Q 014268 178 QPD----CGEQALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 178 ~~~----~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
.+. -.+.+.+.+..+...+.--+++||+++.+.
T Consensus 232 p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 232 PASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 111 123334445555556666688999999775
No 487
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.68 E-value=6.5e-05 Score=68.20 Aligned_cols=78 Identities=28% Similarity=0.458 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~ 195 (427)
+..+.-+.|.|++|+|||.||..++..+...+..|.|++... +...+... . ......+. +..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~-----L~~~l~~~-----~-~~~~~~~~---~~~l--- 106 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD-----LLDELKQS-----R-SDGSYEEL---LKRL--- 106 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH-----HHHHHHCC-----H-CCTTHCHH---HHHH---
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc-----eecccccc-----c-cccchhhh---cCcc---
Confidence 345677999999999999999999999988888999997543 22222111 0 11122222 3333
Q ss_pred CCccEEEEecccccC
Q 014268 196 GSVDVVVVDSVAALV 210 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~ 210 (427)
.+++++|||.+....
T Consensus 107 ~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 107 KRVDLLILDDLGYEP 121 (178)
T ss_dssp HTSSCEEEETCTSS-
T ss_pred ccccEecccccceee
Confidence 358999999997654
No 488
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.67 E-value=0.00012 Score=75.17 Aligned_cols=140 Identities=19% Similarity=0.296 Sum_probs=82.2
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHH-HHHhccc-cCc-
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSL-AETIGVK-TEN- 173 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~-~~~ig~~-~~~- 173 (427)
..+.||+..+|.++. +.+|+.+.|.|++|+|||||+ +++....+.+.+++.+.+|...+ ... ...++.. +.+
T Consensus 138 ~~l~TGiraID~ll~---I~~Gqri~I~G~sG~GKTtLl-~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~t 213 (432)
T PRK06793 138 DVFETGIKSIDSMLT---IGIGQKIGIFAGSGVGKSTLL-GMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKS 213 (432)
T ss_pred hccCCCCEEEeccce---ecCCcEEEEECCCCCChHHHH-HHHhccCCCCeEEEEeCCCCcccHHHHHHHHhhhccccee
Confidence 467899999999775 889999999999999999994 55554555566677677766554 122 2122211 111
Q ss_pred cccCCC--C-CHHHH------HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhc
Q 014268 174 LLLAQP--D-CGEQA------LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244 (427)
Q Consensus 174 l~~~~~--~-~~~~~------~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~ 244 (427)
..+... . ..... ...++.+..+++.-++++|++..... ..|+++..+...- .
T Consensus 214 vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~---------------A~reisl~~~e~p----~ 274 (432)
T PRK06793 214 VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFAD---------------ARRSVDIAVKELP----I 274 (432)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHH---------------HHHHHHHHhcCCC----C
Confidence 111111 1 11111 22234444567788999999887651 1244443333322 2
Q ss_pred CCcEEEEEecCCcccc
Q 014268 245 SQTILIFINQVRAKLS 260 (427)
Q Consensus 245 ~~~tVI~isql~~~v~ 260 (427)
.|-|..+.+|+.+-.+
T Consensus 275 ~G~~~~~~s~l~~L~E 290 (432)
T PRK06793 275 GGKTLLMESYMKKLLE 290 (432)
T ss_pred CCeeeeeeccchhHHH
Confidence 3677777777655433
No 489
>PRK09183 transposase/IS protein; Provisional
Probab=97.66 E-value=0.00024 Score=68.37 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+..|+.+.|.||||+|||+|+..++..+...|..|.|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 67899999999999999999888877766777788888743
No 490
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0011 Score=69.44 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCC--HH----HHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALD--PS----LAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~--~~----~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+.+|++++|+|++|+||||++.+++..+... +..+.+++...... .. +.+.+++.. ....+..++.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v-----~~a~d~~~L~ 420 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV-----HEADSAESLL 420 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee-----EecCcHHHHH
Confidence 45689999999999999999999999887654 35688887643211 11 122233322 1222334444
Q ss_pred HHHHHHHhcCCccEEEEecccccC
Q 014268 187 SLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 187 ~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
..+..+ .+.++|+||......
T Consensus 421 ~aL~~l---~~~DLVLIDTaG~s~ 441 (559)
T PRK12727 421 DLLERL---RDYKLVLIDTAGMGQ 441 (559)
T ss_pred HHHHHh---ccCCEEEecCCCcch
Confidence 444443 458999999887654
No 491
>PRK06893 DNA replication initiation factor; Validated
Probab=97.66 E-value=0.0004 Score=65.60 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
..+.|+|+||+|||+|+..++..+...+..+.|++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4689999999999999888888877777889998864
No 492
>PRK06921 hypothetical protein; Provisional
Probab=97.65 E-value=0.00047 Score=66.68 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAE 156 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E 156 (427)
.+..+.|.|++|+|||+|+..++..+... +..|+|++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence 36679999999999999988888888776 7889999863
No 493
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.65 E-value=0.00071 Score=69.61 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
-.++.++|++|+||||++.+++..+. +.+..|++++....... .++...+++.-. .....++.++...+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~--~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA--LGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe--cCCCCCHHHHHHHHHH
Confidence 36999999999999999999999875 46788999988743321 234445544221 1122334444332222
Q ss_pred HHhcCCccEEEEecccccC
Q 014268 192 LIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l~ 210 (427)
.....+.++|+||....+.
T Consensus 177 ~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHhcCCCEEEEeCCCccc
Confidence 2334668999999877654
No 494
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.64 E-value=0.00047 Score=61.45 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCC-HHHHHHHHHHHHhc-
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC-GEQALSLVDTLIRS- 195 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~-~~~~~~~~~~l~~~- 195 (427)
.+.+++|.||||+|||+++..+...+........+-+........-+..+.+... ...... ..+...+.+.+...
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~---~~~lS~G~~~~~~la~~L~~~~ 96 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFT---RLQLSGGEKELSALALILALAS 96 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehh---eeeccccHHHHHHHHHHHHhcC
Confidence 4579999999999999997665555443321111100000000000000000000 001111 23334444444332
Q ss_pred -CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 196 -GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 196 -~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
..+.++++|.+..-... .....+...+..+ +.+ ++++|+++|...
T Consensus 97 ~~~~~llllDEp~~gld~-------------~~~~~l~~~l~~~---~~~-~~~vii~TH~~~ 142 (162)
T cd03227 97 LKPRPLYILDEIDRGLDP-------------RDGQALAEAILEH---LVK-GAQVIVITHLPE 142 (162)
T ss_pred CCCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHH---Hhc-CCEEEEEcCCHH
Confidence 37899999998765520 1123344444433 333 899999999665
No 495
>PRK06526 transposase; Provisional
Probab=97.64 E-value=0.00013 Score=69.99 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~ 195 (427)
+..+.-+.|+||||+|||+||..++..+...+..|+|++... +...+.... ...... ..+..+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~-----l~~~l~~~~------~~~~~~---~~l~~l--- 157 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ-----WVARLAAAH------HAGRLQ---AELVKL--- 157 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH-----HHHHHHHHH------hcCcHH---HHHHHh---
Confidence 456778999999999999999999988888888888765432 222221110 001111 122222
Q ss_pred CCccEEEEecccccC
Q 014268 196 GSVDVVVVDSVAALV 210 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~ 210 (427)
.+++++|||.+....
T Consensus 158 ~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 158 GRYPLLIVDEVGYIP 172 (254)
T ss_pred ccCCEEEEcccccCC
Confidence 357999999998765
No 496
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.64 E-value=0.00021 Score=73.70 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+.++.-++|+||||+|||+||..++..+. ...+.+..... ....+| .....+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~seL----~~k~~G------------e~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSEL----IQKYLG------------DGPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecchh----hhhhcc------------hHHHHHHHHHHHHH
Confidence 677888899999999999999888777653 22333332111 000001 01111111112223
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
.+.+.+++||.+..+..........++. ...+.+...|..+-......++.||++++....+
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 4567899999988876322111111221 2234444555555433344578888888755443
No 497
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.64 E-value=0.00015 Score=74.50 Aligned_cols=110 Identities=19% Similarity=0.290 Sum_probs=66.7
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHh-ccc-cCc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETI-GVK-TEN 173 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~i-g~~-~~~ 173 (427)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||||+ +++......+.+++.+.+|...+ ....+.+ +-. +.+
T Consensus 144 ~e~l~TGi~~ID~l~~---i~~Gq~~~I~G~sG~GKTtLl-~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~~~~~~l~r 219 (441)
T PRK09099 144 EAPLPTGVRIVDGLMT---LGEGQRMGIFAPAGVGKSTLM-GMFARGTQCDVNVIALIGERGREVREFIELILGEDGMAR 219 (441)
T ss_pred ccccCCCceeccceee---ecCCCEEEEECCCCCCHHHHH-HHHhCCCCCCeEEEEEEccChHHHHHHHHHHhhcCCcce
Confidence 4578999999999965 779999999999999999995 55554444555666667776544 1221111 110 111
Q ss_pred -cccCCCC---CHHH------HHHHHHHHHhcCCccEEEEecccccC
Q 014268 174 -LLLAQPD---CGEQ------ALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 174 -l~~~~~~---~~~~------~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
+.+.... .... .+..++.+..+++--++++|+++.+.
T Consensus 220 tvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A 266 (441)
T PRK09099 220 SVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFA 266 (441)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 1121111 1222 22334444455666688899988553
No 498
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.63 E-value=0.0024 Score=65.93 Aligned_cols=88 Identities=23% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHHH-HHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQAL-SLVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~~-~~~~ 190 (427)
+..++.++|++|+||||++..++..+...+..|++++...... ..++..++++.-. .........++ ..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~--~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG--DPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe--cCCccCHHHHHHHHHH
Confidence 3569999999999999999999998887778888887754322 1234455543210 01112222322 2222
Q ss_pred HHHhcCCccEEEEecccccC
Q 014268 191 TLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~ 210 (427)
.+ ...++|+||....+.
T Consensus 172 ~~---~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 172 KF---KKADVIIVDTAGRHA 188 (437)
T ss_pred Hh---hcCCEEEEECCCccc
Confidence 22 234899999876654
No 499
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=6.6e-05 Score=72.81 Aligned_cols=132 Identities=13% Similarity=0.236 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC----ceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG----GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~----~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
|.-.+++.+.||||+|||+||..+|..+.-+- .....+.. .......+-++ .....+..++..+..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi--nshsLFSKWFs--------ESgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI--NSHSLFSKWFS--------ESGKLVAKMFQKIQE 243 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE--ehhHHHHHHHh--------hhhhHHHHHHHHHHH
Confidence 44678999999999999999999988875321 01111110 00011111111 111234556666666
Q ss_pred HHhc-CCccEEEEecccccCCC--CccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccc
Q 014268 192 LIRS-GSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 261 (427)
Q Consensus 192 l~~~-~~~~lvvIDsl~~l~~~--~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~ 261 (427)
+++. +..-.|.||.+-.+... ...++ .+.. ...|.+...|.+|-+.-+..|+.++++|.+...++.
T Consensus 244 Lv~d~~~lVfvLIDEVESLa~aR~s~~S~--~Eps--DaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~ 312 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESLAAARTSASSR--NEPS--DAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV 312 (423)
T ss_pred HHhCCCcEEEEEeHHHHHHHHHHHhhhcC--CCCc--hHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence 6654 44567779987765421 11111 1211 223445455555555445578899999998887664
No 500
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.61 E-value=0.00024 Score=66.52 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia 140 (427)
++++|.||||+|||||+..++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 899999999999999955544
Done!