Query 014268
Match_columns 427
No_of_seqs 548 out of 4381
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hr8_A Protein RECA; alpha and 100.0 1.5E-54 5E-59 431.4 31.3 331 63-395 5-341 (356)
2 1xp8_A RECA protein, recombina 100.0 1.3E-52 4.5E-57 419.9 31.1 328 62-392 18-347 (366)
3 3cmu_A Protein RECA, recombina 100.0 3.5E-53 1.2E-57 488.2 30.3 323 64-389 1721-2044(2050)
4 1u94_A RECA protein, recombina 100.0 2.7E-51 9.4E-56 409.2 30.3 336 64-402 9-348 (356)
5 3cmw_A Protein RECA, recombina 100.0 2E-51 7E-56 469.9 29.7 323 64-389 1377-1700(1706)
6 2zr9_A Protein RECA, recombina 100.0 2.4E-49 8.3E-54 394.6 29.8 323 64-389 7-330 (349)
7 3cmu_A Protein RECA, recombina 100.0 1.8E-46 6.1E-51 432.6 32.1 325 64-391 329-654 (2050)
8 3cmw_A Protein RECA, recombina 100.0 2E-46 7E-51 428.7 29.1 326 64-392 329-655 (1706)
9 3io5_A Recombination and repai 100.0 2.1E-45 7.2E-50 355.8 24.8 282 96-384 3-312 (333)
10 3bgw_A DNAB-like replicative h 100.0 2.3E-37 8E-42 317.6 18.1 293 2-336 103-437 (444)
11 2q6t_A DNAB replication FORK h 100.0 4.3E-37 1.5E-41 316.2 17.0 299 2-336 103-440 (444)
12 2r6a_A DNAB helicase, replicat 100.0 7.6E-36 2.6E-40 307.8 18.4 297 2-336 106-441 (454)
13 4a1f_A DNAB helicase, replicat 100.0 7.4E-36 2.5E-40 294.9 16.9 243 65-336 4-317 (338)
14 3bh0_A DNAB-like replicative h 100.0 3.2E-33 1.1E-37 274.9 19.8 243 60-335 25-307 (315)
15 2z43_A DNA repair and recombin 100.0 3.2E-30 1.1E-34 254.5 17.0 246 65-332 58-321 (324)
16 1v5w_A DMC1, meiotic recombina 100.0 2.2E-30 7.4E-35 257.7 15.7 247 65-332 73-340 (343)
17 2i1q_A DNA repair and recombin 100.0 4.5E-30 1.5E-34 253.0 16.4 247 63-331 47-321 (322)
18 3lda_A DNA repair protein RAD5 100.0 1.7E-27 6E-32 240.5 20.3 222 96-333 156-395 (400)
19 1n0w_A DNA repair protein RAD5 100.0 4.1E-27 1.4E-31 221.0 19.6 221 96-332 2-240 (243)
20 2zts_A Putative uncharacterize 99.9 4E-27 1.4E-31 221.7 16.1 210 95-332 7-244 (251)
21 1q57_A DNA primase/helicase; d 99.9 2.4E-26 8.3E-31 239.7 19.0 221 96-336 220-482 (503)
22 2dr3_A UPF0273 protein PH0284; 99.9 1.3E-25 4.6E-30 211.0 17.7 203 98-332 3-233 (247)
23 2cvh_A DNA repair and recombin 99.9 1.3E-25 4.4E-30 207.6 17.1 206 99-331 1-217 (220)
24 1pzn_A RAD51, DNA repair and r 99.9 1E-25 3.5E-30 224.3 17.4 218 96-331 109-348 (349)
25 4a74_A DNA repair and recombin 99.9 2.4E-23 8.3E-28 193.5 19.3 206 96-331 3-230 (231)
26 2w0m_A SSO2452; RECA, SSPF, un 99.9 8.3E-22 2.9E-26 183.0 18.0 203 98-332 3-229 (235)
27 1cr0_A DNA primase/helicase; R 99.9 1E-21 3.4E-26 190.8 19.1 219 96-334 13-273 (296)
28 1nlf_A Regulatory protein REPA 99.8 1.1E-20 3.9E-25 181.9 14.9 216 97-331 10-260 (279)
29 2ehv_A Hypothetical protein PH 99.8 3.1E-20 1.1E-24 174.6 17.1 209 96-333 8-245 (251)
30 1tf7_A KAIC; homohexamer, hexa 99.8 3.4E-18 1.2E-22 179.1 19.6 212 96-337 259-483 (525)
31 3bs4_A Uncharacterized protein 99.6 4E-15 1.4E-19 141.3 14.7 73 99-172 2-76 (260)
32 1tf7_A KAIC; homohexamer, hexa 99.6 2.1E-14 7.3E-19 150.2 18.7 191 95-314 16-228 (525)
33 2vhj_A Ntpase P4, P4; non- hyd 99.4 6E-14 2E-18 136.5 6.6 132 98-255 104-235 (331)
34 3tui_C Methionine import ATP-b 99.3 1E-12 3.5E-17 130.5 6.7 160 115-296 50-246 (366)
35 3rlf_A Maltose/maltodextrin im 99.3 1.4E-12 4.7E-17 130.3 5.2 139 116-258 26-196 (381)
36 3fvq_A Fe(3+) IONS import ATP- 99.3 1.4E-12 4.9E-17 129.3 5.2 135 115-258 26-201 (359)
37 4g1u_C Hemin import ATP-bindin 99.3 1.1E-11 3.8E-16 118.4 10.0 152 116-294 34-228 (266)
38 1vpl_A ABC transporter, ATP-bi 99.3 4.2E-12 1.4E-16 120.6 6.7 155 115-291 37-223 (256)
39 3tif_A Uncharacterized ABC tra 99.3 1.4E-11 4.9E-16 115.5 9.8 156 115-292 27-223 (235)
40 3gfo_A Cobalt import ATP-bindi 99.3 4.3E-12 1.5E-16 121.8 6.3 150 116-293 31-223 (275)
41 1b0u_A Histidine permease; ABC 99.2 3.8E-12 1.3E-16 121.4 5.3 155 115-291 28-230 (262)
42 2olj_A Amino acid ABC transpor 99.2 4.5E-12 1.5E-16 120.9 5.7 156 115-292 46-237 (263)
43 3d31_A Sulfate/molybdate ABC t 99.2 3.7E-12 1.3E-16 126.1 4.9 139 116-258 23-190 (348)
44 2yyz_A Sugar ABC transporter, 99.2 1.6E-11 5.5E-16 122.0 8.6 139 116-258 26-196 (359)
45 1v43_A Sugar-binding transport 99.2 7.9E-12 2.7E-16 124.7 6.3 135 115-258 33-204 (372)
46 2it1_A 362AA long hypothetical 99.2 6.3E-12 2.1E-16 125.0 5.1 139 116-258 26-196 (362)
47 1g6h_A High-affinity branched- 99.2 1.9E-11 6.6E-16 116.1 8.0 71 115-186 29-103 (257)
48 1z47_A CYSA, putative ABC-tran 99.2 5E-12 1.7E-16 125.4 4.0 139 116-258 38-208 (355)
49 2pcj_A ABC transporter, lipopr 99.2 1.7E-11 5.7E-16 114.2 7.2 72 116-188 27-105 (224)
50 1g29_1 MALK, maltose transport 99.2 7.1E-12 2.4E-16 125.2 3.7 139 116-258 26-202 (372)
51 2yz2_A Putative ABC transporte 99.2 3.6E-11 1.2E-15 114.9 8.1 156 115-292 29-216 (266)
52 1ji0_A ABC transporter; ATP bi 99.2 1.1E-11 3.8E-16 116.6 3.9 154 116-291 29-216 (240)
53 2d2e_A SUFC protein; ABC-ATPas 99.2 2E-10 6.7E-15 108.7 12.4 154 116-291 26-221 (250)
54 1oxx_K GLCV, glucose, ABC tran 99.1 6.9E-12 2.4E-16 124.5 1.9 134 116-258 28-203 (353)
55 2onk_A Molybdate/tungstate ABC 99.1 4.5E-11 1.5E-15 112.4 7.2 148 116-291 22-204 (240)
56 2ihy_A ABC transporter, ATP-bi 99.1 5.8E-11 2E-15 114.2 7.3 59 116-175 44-107 (279)
57 2qi9_C Vitamin B12 import ATP- 99.1 1.4E-10 4.8E-15 109.6 9.5 69 116-186 23-94 (249)
58 2ff7_A Alpha-hemolysin translo 99.1 1.6E-10 5.3E-15 109.2 9.7 69 116-186 32-103 (247)
59 2zu0_C Probable ATP-dependent 99.1 2.6E-10 8.9E-15 108.9 11.1 155 116-291 43-242 (267)
60 2ixe_A Antigen peptide transpo 99.1 5.3E-11 1.8E-15 114.0 5.7 153 115-291 41-233 (271)
61 3nh6_A ATP-binding cassette SU 99.1 1.1E-10 3.8E-15 113.6 6.3 69 115-185 76-147 (306)
62 1sgw_A Putative ABC transporte 99.0 6.1E-11 2.1E-15 109.6 2.8 70 116-188 32-101 (214)
63 2nq2_C Hypothetical ABC transp 99.0 3.5E-10 1.2E-14 107.2 8.1 36 116-152 28-63 (253)
64 1mv5_A LMRA, multidrug resista 99.0 2.3E-10 7.7E-15 107.8 6.7 154 115-293 24-216 (243)
65 2ghi_A Transport protein; mult 99.0 5E-10 1.7E-14 106.5 8.2 151 115-291 42-230 (260)
66 3gd7_A Fusion complex of cysti 99.0 9.5E-10 3.3E-14 110.4 10.3 131 116-257 44-215 (390)
67 2b8t_A Thymidine kinase; deoxy 98.9 1.9E-09 6.6E-14 100.0 8.4 139 117-288 10-150 (223)
68 3b60_A Lipid A export ATP-bind 98.9 4.6E-09 1.6E-13 111.1 12.1 153 115-292 365-556 (582)
69 3b5x_A Lipid A export ATP-bind 98.9 1.8E-09 6.3E-14 114.1 7.2 153 115-292 365-556 (582)
70 2pjz_A Hypothetical protein ST 98.9 1.1E-09 3.6E-14 104.4 4.8 153 115-294 27-206 (263)
71 2pze_A Cystic fibrosis transme 98.8 4.3E-09 1.5E-13 98.1 8.0 60 115-186 30-89 (229)
72 2cbz_A Multidrug resistance-as 98.8 8.4E-09 2.9E-13 96.6 9.7 40 115-155 27-66 (237)
73 2yl4_A ATP-binding cassette SU 98.8 3.8E-09 1.3E-13 111.9 7.9 154 115-293 366-560 (595)
74 3qf4_B Uncharacterized ABC tra 98.8 3.4E-09 1.2E-13 112.4 7.3 69 116-186 378-449 (598)
75 3qf4_A ABC transporter, ATP-bi 98.8 2.8E-09 9.7E-14 112.8 6.4 61 116-177 366-429 (587)
76 4a82_A Cystic fibrosis transme 98.8 4.2E-09 1.4E-13 111.3 7.1 68 116-185 364-434 (578)
77 3ozx_A RNAse L inhibitor; ATP 98.7 1.7E-08 5.9E-13 105.5 7.8 36 116-152 291-326 (538)
78 2bbs_A Cystic fibrosis transme 98.7 2.1E-08 7.3E-13 96.7 7.5 59 116-186 61-119 (290)
79 3bk7_A ABC transporter ATP-bin 98.6 7.2E-09 2.5E-13 109.8 2.3 33 116-149 379-411 (607)
80 1yqt_A RNAse L inhibitor; ATP- 98.6 1E-08 3.5E-13 107.3 2.4 33 116-149 309-341 (538)
81 3g5u_A MCG1178, multidrug resi 98.6 5.9E-08 2E-12 111.2 8.2 147 116-291 1056-1246(1284)
82 3g5u_A MCG1178, multidrug resi 98.6 8.3E-08 2.8E-12 110.0 9.0 70 115-186 412-484 (1284)
83 4f4c_A Multidrug resistance pr 98.5 9.4E-08 3.2E-12 109.8 8.0 61 116-177 1102-1165(1321)
84 4f4c_A Multidrug resistance pr 98.5 3.9E-07 1.3E-11 104.7 12.3 62 115-177 440-504 (1321)
85 2kjq_A DNAA-related protein; s 98.5 1.1E-06 3.6E-11 76.2 11.2 91 115-255 33-124 (149)
86 3ec2_A DNA replication protein 98.4 4.5E-07 1.5E-11 80.5 8.5 109 116-257 35-144 (180)
87 3j16_B RLI1P; ribosome recycli 98.4 6.9E-07 2.4E-11 94.6 9.1 33 116-149 100-132 (608)
88 3ozx_A RNAse L inhibitor; ATP 98.4 9.4E-07 3.2E-11 92.3 9.6 34 115-149 21-54 (538)
89 3bk7_A ABC transporter ATP-bin 98.3 1.4E-07 4.7E-12 100.0 2.9 31 116-147 114-144 (607)
90 1yqt_A RNAse L inhibitor; ATP- 98.3 1.4E-06 4.7E-11 91.1 10.2 31 116-147 44-74 (538)
91 3j16_B RLI1P; ribosome recycli 98.3 5.3E-06 1.8E-10 87.7 14.5 33 114-147 373-405 (608)
92 3e70_C DPA, signal recognition 98.3 4.7E-06 1.6E-10 81.6 13.1 88 117-209 127-223 (328)
93 3ux8_A Excinuclease ABC, A sub 98.3 2.2E-07 7.6E-12 99.7 3.0 22 115-136 40-61 (670)
94 1rj9_A FTSY, signal recognitio 98.3 8.8E-07 3E-11 85.9 6.6 38 118-155 101-138 (304)
95 2yhs_A FTSY, cell division pro 98.2 5.4E-06 1.8E-10 85.1 11.8 90 116-210 290-388 (503)
96 2orw_A Thymidine kinase; TMTK, 98.2 1.5E-06 5.1E-11 78.0 6.5 110 118-257 2-114 (184)
97 3b9q_A Chloroplast SRP recepto 98.2 1.3E-06 4.6E-11 84.6 6.1 44 116-160 97-140 (302)
98 2og2_A Putative signal recogni 98.2 2.3E-06 7.7E-11 84.9 7.4 44 116-160 154-197 (359)
99 4gp7_A Metallophosphoesterase; 98.2 2.8E-07 9.7E-12 81.5 0.5 22 116-137 6-27 (171)
100 3jvv_A Twitching mobility prot 98.1 3.3E-06 1.1E-10 83.7 6.7 112 117-259 121-234 (356)
101 1c9k_A COBU, adenosylcobinamid 98.1 4.3E-07 1.5E-11 81.2 0.4 125 121-254 1-134 (180)
102 1xx6_A Thymidine kinase; NESG, 98.1 8.5E-06 2.9E-10 73.6 8.4 134 117-288 6-142 (191)
103 2iw3_A Elongation factor 3A; a 98.1 1.8E-06 6.1E-11 95.4 4.3 39 116-155 696-734 (986)
104 1fnn_A CDC6P, cell division co 98.0 5.7E-05 2E-09 74.5 14.4 85 121-209 46-137 (389)
105 2j9r_A Thymidine kinase; TK1, 98.0 8.1E-06 2.8E-10 74.8 7.2 134 117-288 26-162 (214)
106 4b4t_J 26S protease regulatory 98.0 7.4E-05 2.5E-09 74.8 14.7 124 115-260 178-301 (405)
107 4b4t_L 26S protease subunit RP 98.0 7.4E-05 2.5E-09 75.8 14.9 124 115-260 211-334 (437)
108 4b4t_I 26S protease regulatory 98.0 0.00011 3.6E-09 74.1 15.8 124 115-260 212-335 (437)
109 2iw3_A Elongation factor 3A; a 98.0 8.5E-06 2.9E-10 90.0 7.7 25 116-140 458-482 (986)
110 1j8m_F SRP54, signal recogniti 98.0 3.1E-05 1.1E-09 74.7 10.8 88 119-209 98-192 (297)
111 4b4t_K 26S protease regulatory 98.0 7.1E-05 2.4E-09 75.7 13.8 123 115-259 202-324 (428)
112 3h4m_A Proteasome-activating n 97.9 9.9E-05 3.4E-09 69.9 13.5 122 115-258 47-168 (285)
113 4b4t_M 26S protease regulatory 97.9 7.2E-05 2.5E-09 75.8 12.9 124 115-260 211-334 (434)
114 2qby_A CDC6 homolog 1, cell di 97.9 4.5E-05 1.6E-09 74.8 11.0 89 118-210 44-141 (386)
115 2orv_A Thymidine kinase; TP4A 97.9 6.6E-05 2.2E-09 69.4 11.1 108 118-257 18-127 (234)
116 2eyu_A Twitching motility prot 97.9 4E-05 1.4E-09 72.5 9.8 39 116-155 22-61 (261)
117 3b85_A Phosphate starvation-in 97.9 5.7E-07 1.9E-11 82.4 -3.0 30 115-146 18-47 (208)
118 3ux8_A Excinuclease ABC, A sub 97.9 1.6E-05 5.3E-10 85.3 7.0 21 116-136 345-365 (670)
119 1w4r_A Thymidine kinase; type 97.8 6E-05 2.1E-09 67.9 9.4 109 117-257 18-128 (195)
120 2pt7_A CAG-ALFA; ATPase, prote 97.8 1.9E-05 6.4E-10 77.4 6.6 40 116-156 168-207 (330)
121 3dm5_A SRP54, signal recogniti 97.8 0.00046 1.6E-08 69.9 16.9 91 118-210 99-195 (443)
122 1vma_A Cell division protein F 97.8 0.00018 6.2E-09 69.6 13.4 89 117-208 102-197 (306)
123 2v1u_A Cell division control p 97.8 0.00015 5.2E-09 71.2 12.3 89 118-210 43-143 (387)
124 1oft_A SULA, hypothetical prot 97.8 0.00019 6.4E-09 62.5 11.2 108 97-204 22-132 (161)
125 4b4t_H 26S protease regulatory 97.8 0.00026 8.9E-09 71.9 14.0 123 115-259 239-361 (467)
126 3pih_A Uvrabc system protein A 97.8 3.5E-05 1.2E-09 84.8 7.9 22 116-137 607-628 (916)
127 3bos_A Putative DNA replicatio 97.8 8.1E-05 2.8E-09 68.0 9.1 40 118-157 51-90 (242)
128 3kl4_A SRP54, signal recogniti 97.7 0.00043 1.5E-08 70.1 14.3 90 118-209 96-191 (433)
129 2obl_A ESCN; ATPase, hydrolase 97.7 3.5E-05 1.2E-09 76.0 6.1 56 98-157 53-108 (347)
130 2r6f_A Excinuclease ABC subuni 97.7 0.00012 4.1E-09 80.5 10.8 25 116-140 647-671 (972)
131 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.0004 1.4E-08 67.5 13.6 80 114-211 40-119 (322)
132 2ygr_A Uvrabc system protein A 97.7 0.00011 3.7E-09 81.1 10.4 25 116-140 665-689 (993)
133 2dpy_A FLII, flagellum-specifi 97.7 5.1E-05 1.7E-09 77.2 6.8 55 99-157 140-194 (438)
134 4aby_A DNA repair protein RECN 97.7 0.00017 5.9E-09 72.2 10.7 27 115-143 57-83 (415)
135 1zp6_A Hypothetical protein AT 97.7 2.9E-05 9.9E-10 69.0 4.4 39 115-156 5-43 (191)
136 1sxj_E Activator 1 40 kDa subu 97.6 0.00019 6.3E-09 70.2 10.2 35 122-156 39-73 (354)
137 3e2i_A Thymidine kinase; Zn-bi 97.6 7.8E-05 2.7E-09 68.2 6.8 134 116-288 25-162 (219)
138 2px0_A Flagellar biosynthesis 97.6 0.00025 8.6E-09 68.2 10.7 82 117-206 103-191 (296)
139 2ewv_A Twitching motility prot 97.6 0.00013 4.5E-09 72.5 8.7 86 116-207 133-219 (372)
140 2ffh_A Protein (FFH); SRP54, s 97.6 0.0011 3.8E-08 66.9 15.5 90 118-210 97-193 (425)
141 2vf7_A UVRA2, excinuclease ABC 97.6 7.1E-05 2.4E-09 81.7 7.1 24 115-138 519-542 (842)
142 2i3b_A HCR-ntpase, human cance 97.6 9.5E-06 3.2E-10 73.1 0.1 26 119-144 1-26 (189)
143 1htw_A HI0065; nucleotide-bind 97.6 3E-05 1E-09 67.8 3.2 39 115-155 29-67 (158)
144 2r8r_A Sensor protein; KDPD, P 97.6 0.0009 3.1E-08 61.7 13.1 43 118-160 4-47 (228)
145 3thx_B DNA mismatch repair pro 97.6 5.4E-05 1.8E-09 83.5 5.5 25 116-140 670-694 (918)
146 1zu4_A FTSY; GTPase, signal re 97.5 0.00026 9E-09 68.9 9.7 42 116-157 102-143 (320)
147 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00056 1.9E-08 63.6 11.7 78 115-211 35-112 (262)
148 1ye8_A Protein THEP1, hypothet 97.5 0.0003 1E-08 62.4 9.3 23 121-144 2-24 (178)
149 1lv7_A FTSH; alpha/beta domain 97.5 0.0012 4E-08 61.5 13.7 75 116-211 44-118 (257)
150 1sq5_A Pantothenate kinase; P- 97.5 0.0002 6.9E-09 69.2 8.5 77 116-193 77-156 (308)
151 3t15_A Ribulose bisphosphate c 97.5 0.00026 8.7E-09 67.9 9.0 82 115-211 32-113 (293)
152 3b9p_A CG5977-PA, isoform A; A 97.5 0.0013 4.5E-08 62.5 13.9 75 118-211 53-127 (297)
153 1l8q_A Chromosomal replication 97.5 0.00034 1.2E-08 67.7 9.9 39 118-156 36-74 (324)
154 3thx_A DNA mismatch repair pro 97.5 0.00019 6.6E-09 79.3 9.0 25 116-140 659-683 (934)
155 3cf0_A Transitional endoplasmi 97.5 0.00021 7.3E-09 68.6 8.0 78 115-211 45-122 (301)
156 4fcw_A Chaperone protein CLPB; 97.5 0.00092 3.2E-08 63.8 12.4 85 119-210 47-132 (311)
157 3ice_A Transcription terminati 97.5 0.00026 8.9E-09 70.3 8.5 53 98-153 156-210 (422)
158 1jbk_A CLPB protein; beta barr 97.4 0.0012 4.1E-08 57.4 11.9 81 118-211 42-129 (195)
159 1ls1_A Signal recognition part 97.4 0.00054 1.8E-08 65.9 10.2 89 118-209 97-192 (295)
160 2gza_A Type IV secretion syste 97.4 0.00013 4.3E-09 72.3 5.9 40 116-156 172-211 (361)
161 2qm8_A GTPase/ATPase; G protei 97.4 0.00015 5.3E-09 71.0 6.1 95 115-210 51-160 (337)
162 3eie_A Vacuolar protein sortin 97.4 0.0011 3.9E-08 64.1 12.2 78 115-211 47-124 (322)
163 2ce7_A Cell division protein F 97.4 0.0018 6.1E-08 66.4 13.5 120 115-260 47-168 (476)
164 4eun_A Thermoresistant glucoki 97.3 0.00022 7.4E-09 64.2 5.7 39 117-160 27-65 (200)
165 1wb9_A DNA mismatch repair pro 97.3 0.00045 1.6E-08 75.2 9.2 26 117-143 605-630 (800)
166 3cf2_A TER ATPase, transitiona 97.3 0.0011 3.9E-08 71.9 12.3 121 115-260 234-354 (806)
167 2o8b_B DNA mismatch repair pro 97.3 0.0015 5.2E-08 73.0 13.3 21 119-139 789-809 (1022)
168 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 65.9 4.1 28 116-144 17-44 (207)
169 2p65_A Hypothetical protein PF 97.3 0.00084 2.9E-08 58.4 8.9 80 119-211 43-129 (187)
170 2chg_A Replication factor C sm 97.3 0.0025 8.7E-08 56.7 12.3 68 122-210 41-115 (226)
171 2x8a_A Nuclear valosin-contain 97.3 0.00091 3.1E-08 63.5 9.7 38 115-157 42-79 (274)
172 3uie_A Adenylyl-sulfate kinase 97.3 0.00025 8.4E-09 63.8 5.4 41 116-156 22-62 (200)
173 2v3c_C SRP54, signal recogniti 97.3 0.00045 1.6E-08 70.0 7.9 38 120-157 100-137 (432)
174 2z4s_A Chromosomal replication 97.3 0.0018 6.1E-08 65.8 12.3 105 119-255 130-236 (440)
175 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 0.0021 7.2E-08 63.6 12.5 24 116-141 21-44 (365)
176 2pez_A Bifunctional 3'-phospho 97.3 0.00028 9.4E-09 62.1 5.3 40 117-156 3-42 (179)
177 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00063 2.1E-08 69.3 8.6 54 97-153 132-186 (473)
178 2qp9_X Vacuolar protein sortin 97.2 0.0013 4.4E-08 64.8 10.6 78 115-211 80-157 (355)
179 1ewq_A DNA mismatch repair pro 97.2 0.00056 1.9E-08 74.1 8.6 24 119-143 576-599 (765)
180 3n70_A Transport activator; si 97.2 0.00073 2.5E-08 57.5 7.5 36 120-156 25-60 (145)
181 3c8u_A Fructokinase; YP_612366 97.2 0.00031 1E-08 63.6 5.2 29 116-144 19-47 (208)
182 2yvu_A Probable adenylyl-sulfa 97.2 0.00037 1.3E-08 61.7 5.5 48 106-156 3-50 (186)
183 3syl_A Protein CBBX; photosynt 97.2 0.0015 5.3E-08 62.2 10.4 76 117-211 65-144 (309)
184 2xxa_A Signal recognition part 97.2 0.002 6.9E-08 65.2 11.6 88 119-209 100-195 (433)
185 1sxj_A Activator 1 95 kDa subu 97.2 0.0021 7.1E-08 66.6 11.8 87 116-211 74-162 (516)
186 3szr_A Interferon-induced GTP- 97.2 0.00016 5.4E-09 76.6 3.2 157 122-297 48-231 (608)
187 1z6g_A Guanylate kinase; struc 97.2 0.00025 8.6E-09 64.9 4.2 28 116-144 20-47 (218)
188 1g5t_A COB(I)alamin adenosyltr 97.1 0.0031 1.1E-07 56.8 11.1 138 120-290 29-180 (196)
189 1njg_A DNA polymerase III subu 97.1 0.00073 2.5E-08 61.0 7.0 26 120-145 46-71 (250)
190 3tr0_A Guanylate kinase, GMP k 97.1 0.00028 9.6E-09 63.1 4.1 28 116-144 4-31 (205)
191 1w5s_A Origin recognition comp 97.1 0.0015 5.2E-08 64.7 9.8 89 118-210 49-151 (412)
192 2v9p_A Replication protein E1; 97.1 0.00049 1.7E-08 66.5 5.9 37 105-144 114-150 (305)
193 1rz3_A Hypothetical protein rb 97.1 0.00047 1.6E-08 62.1 5.3 41 116-156 19-59 (201)
194 1kgd_A CASK, peripheral plasma 97.1 0.00034 1.1E-08 61.9 4.1 28 115-142 1-28 (180)
195 2qby_B CDC6 homolog 3, cell di 97.1 0.00071 2.4E-08 66.5 6.7 87 119-210 45-146 (384)
196 1s96_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 64.3 3.9 30 115-145 12-41 (219)
197 1ypw_A Transitional endoplasmi 97.1 0.0021 7.1E-08 70.3 10.8 118 115-259 234-353 (806)
198 3sop_A Neuronal-specific septi 97.0 0.0002 6.9E-09 68.0 2.5 51 121-172 4-54 (270)
199 1ixz_A ATP-dependent metallopr 97.0 0.0022 7.5E-08 59.6 9.5 36 115-155 47-82 (254)
200 2zan_A Vacuolar protein sortin 97.0 0.0051 1.8E-07 62.4 13.0 79 115-211 163-241 (444)
201 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00028 9.7E-09 72.1 3.2 39 116-155 135-175 (460)
202 2ck3_A ATP synthase subunit al 97.0 0.0021 7.3E-08 65.8 9.6 46 97-145 143-188 (510)
203 2ck3_D ATP synthase subunit be 97.0 0.003 1E-07 64.3 10.5 53 97-152 134-187 (482)
204 2r9v_A ATP synthase subunit al 97.0 0.0016 5.6E-08 66.6 8.6 55 97-154 156-210 (515)
205 3vfd_A Spastin; ATPase, microt 97.0 0.007 2.4E-07 60.1 13.2 76 117-211 146-221 (389)
206 2j41_A Guanylate kinase; GMP, 97.0 0.00045 1.6E-08 61.8 4.1 28 116-143 3-30 (207)
207 2qe7_A ATP synthase subunit al 97.0 0.0019 6.3E-08 66.1 9.0 55 97-154 143-197 (502)
208 3hu3_A Transitional endoplasmi 97.0 0.0042 1.4E-07 63.9 11.6 119 115-258 234-352 (489)
209 1knq_A Gluconate kinase; ALFA/ 97.0 0.00053 1.8E-08 59.9 4.3 38 117-159 6-43 (175)
210 2j37_W Signal recognition part 97.0 0.0047 1.6E-07 63.7 11.9 90 118-210 100-196 (504)
211 3oaa_A ATP synthase subunit al 97.0 0.0021 7.1E-08 65.7 9.1 55 97-154 143-197 (513)
212 2qen_A Walker-type ATPase; unk 96.9 0.0037 1.2E-07 60.2 10.5 87 119-210 31-141 (350)
213 3aez_A Pantothenate kinase; tr 96.9 0.00081 2.8E-08 65.2 5.6 29 116-145 87-115 (312)
214 3uk6_A RUVB-like 2; hexameric 96.9 0.0059 2E-07 59.7 12.0 39 115-154 66-104 (368)
215 1fx0_B ATP synthase beta chain 96.9 0.0033 1.1E-07 64.2 10.3 59 97-158 146-206 (498)
216 1e69_A Chromosome segregation 96.9 0.0047 1.6E-07 59.8 11.1 24 116-141 22-45 (322)
217 3asz_A Uridine kinase; cytidin 96.9 0.00072 2.5E-08 60.9 4.9 36 117-155 4-39 (211)
218 1fx0_A ATP synthase alpha chai 96.9 0.0013 4.4E-08 67.4 7.2 111 97-210 144-268 (507)
219 1tue_A Replication protein E1; 96.9 0.0006 2.1E-08 61.9 4.0 44 97-143 39-82 (212)
220 4dzz_A Plasmid partitioning pr 96.9 0.003 1E-07 56.3 8.7 84 121-209 3-87 (206)
221 1lvg_A Guanylate kinase, GMP k 96.9 0.00045 1.6E-08 62.1 3.2 27 117-144 2-28 (198)
222 3d8b_A Fidgetin-like protein 1 96.8 0.0061 2.1E-07 59.9 11.2 75 118-211 116-190 (357)
223 2rhm_A Putative kinase; P-loop 96.8 0.00076 2.6E-08 59.6 4.2 29 115-143 1-29 (193)
224 2bdt_A BH3686; alpha-beta prot 96.8 0.00077 2.6E-08 59.7 4.2 34 119-156 2-35 (189)
225 1iy2_A ATP-dependent metallopr 96.8 0.0039 1.3E-07 58.8 9.3 36 115-155 71-106 (278)
226 3l0o_A Transcription terminati 96.8 0.0031 1.1E-07 62.6 8.6 53 98-153 157-211 (427)
227 3end_A Light-independent proto 96.8 0.0025 8.4E-08 61.1 7.7 61 97-157 15-79 (307)
228 3tau_A Guanylate kinase, GMP k 96.8 0.00082 2.8E-08 60.8 4.1 27 117-143 6-32 (208)
229 2jeo_A Uridine-cytidine kinase 96.8 0.00083 2.8E-08 62.4 4.0 29 115-143 21-49 (245)
230 1m7g_A Adenylylsulfate kinase; 96.8 0.0013 4.4E-08 59.5 5.2 40 116-155 22-62 (211)
231 1sxj_C Activator 1 40 kDa subu 96.8 0.0056 1.9E-07 59.5 10.2 24 122-145 49-72 (340)
232 3co5_A Putative two-component 96.8 0.0015 5.1E-08 55.4 5.3 21 121-141 29-49 (143)
233 3vaa_A Shikimate kinase, SK; s 96.7 0.001 3.5E-08 59.6 4.2 28 116-143 22-49 (199)
234 2w58_A DNAI, primosome compone 96.7 0.0017 5.8E-08 58.0 5.6 37 120-156 55-91 (202)
235 1d2n_A N-ethylmaleimide-sensit 96.7 0.0061 2.1E-07 57.2 9.6 36 116-154 61-96 (272)
236 3lnc_A Guanylate kinase, GMP k 96.7 0.00051 1.7E-08 63.1 1.9 25 116-140 24-48 (231)
237 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0055 1.9E-07 63.1 9.7 37 115-156 62-98 (499)
238 3euj_A Chromosome partition pr 96.7 0.00081 2.8E-08 68.9 3.4 41 115-157 26-66 (483)
239 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.002 6.7E-08 60.5 5.3 38 118-155 3-40 (260)
240 2ius_A DNA translocase FTSK; n 96.6 0.014 4.7E-07 60.2 12.0 42 116-157 164-209 (512)
241 3a00_A Guanylate kinase, GMP k 96.6 0.0013 4.4E-08 58.3 3.8 26 119-145 1-26 (186)
242 3tqc_A Pantothenate kinase; bi 96.6 0.0064 2.2E-07 59.0 9.0 37 121-157 94-132 (321)
243 3te6_A Regulatory protein SIR3 96.6 0.0085 2.9E-07 58.1 9.7 89 118-210 44-145 (318)
244 1sxj_D Activator 1 41 kDa subu 96.6 0.03 1E-06 54.0 13.8 52 102-156 44-98 (353)
245 1nks_A Adenylate kinase; therm 96.5 0.0024 8.2E-08 56.1 5.3 34 121-154 3-36 (194)
246 1kht_A Adenylate kinase; phosp 96.5 0.0023 7.8E-08 56.2 5.0 27 119-145 3-29 (192)
247 2oap_1 GSPE-2, type II secreti 96.5 0.0017 5.7E-08 67.2 4.6 40 116-156 257-296 (511)
248 2bjv_A PSP operon transcriptio 96.5 0.0096 3.3E-07 55.5 9.4 39 120-158 30-68 (265)
249 2rcn_A Probable GTPase ENGC; Y 96.5 0.00073 2.5E-08 66.7 1.6 45 102-153 204-249 (358)
250 3cf2_A TER ATPase, transitiona 96.5 0.0036 1.2E-07 68.0 7.0 123 114-258 506-628 (806)
251 3p32_A Probable GTPase RV1496/ 96.4 0.01 3.5E-07 58.2 9.7 40 118-157 78-117 (355)
252 1p9r_A General secretion pathw 96.4 0.0025 8.5E-08 64.3 5.2 37 117-154 165-202 (418)
253 1kag_A SKI, shikimate kinase I 96.4 0.0017 6E-08 56.2 3.5 26 118-143 3-28 (173)
254 2plr_A DTMP kinase, probable t 96.4 0.0031 1.1E-07 56.3 5.2 35 118-153 3-37 (213)
255 2qt1_A Nicotinamide riboside k 96.4 0.0018 6.2E-08 58.2 3.7 38 115-156 17-54 (207)
256 2qor_A Guanylate kinase; phosp 96.4 0.0018 6E-08 58.3 3.6 28 116-143 9-36 (204)
257 3iqw_A Tail-anchored protein t 96.4 0.019 6.6E-07 55.9 11.2 49 105-156 5-53 (334)
258 1sxj_B Activator 1 37 kDa subu 96.4 0.026 8.8E-07 53.6 12.0 68 122-210 45-120 (323)
259 3zq6_A Putative arsenical pump 96.4 0.012 4.3E-07 56.9 9.6 38 120-157 15-52 (324)
260 3fkq_A NTRC-like two-domain pr 96.4 0.015 5.2E-07 57.4 10.4 40 117-156 141-181 (373)
261 1z6t_A APAF-1, apoptotic prote 96.4 0.007 2.4E-07 63.2 8.3 101 105-207 134-246 (591)
262 3u61_B DNA polymerase accessor 96.3 0.035 1.2E-06 53.2 12.6 66 120-210 49-118 (324)
263 4eaq_A DTMP kinase, thymidylat 96.3 0.0043 1.5E-07 57.1 5.8 36 115-151 22-57 (229)
264 1gvn_B Zeta; postsegregational 96.3 0.0035 1.2E-07 59.8 5.3 36 117-155 31-66 (287)
265 1svm_A Large T antigen; AAA+ f 96.3 0.003 1E-07 62.8 4.9 27 115-141 165-191 (377)
266 2vp4_A Deoxynucleoside kinase; 96.3 0.0022 7.4E-08 59.0 3.7 28 115-143 16-43 (230)
267 2a5y_B CED-4; apoptosis; HET: 96.3 0.014 4.9E-07 60.6 10.3 91 118-208 151-254 (549)
268 1ypw_A Transitional endoplasmi 96.3 0.00091 3.1E-08 73.1 1.2 78 114-211 506-584 (806)
269 1xjc_A MOBB protein homolog; s 96.3 0.0048 1.7E-07 54.2 5.7 37 120-156 5-41 (169)
270 1wcv_1 SOJ, segregation protei 96.3 0.009 3.1E-07 55.6 7.9 40 118-157 5-45 (257)
271 1nn5_A Similar to deoxythymidy 96.3 0.0047 1.6E-07 55.4 5.7 37 117-153 7-43 (215)
272 3cm0_A Adenylate kinase; ATP-b 96.3 0.0023 7.8E-08 56.2 3.5 27 117-143 2-28 (186)
273 1qhx_A CPT, protein (chloramph 96.3 0.0028 9.5E-08 55.2 3.9 25 119-143 3-27 (178)
274 2bbw_A Adenylate kinase 4, AK4 96.2 0.003 1E-07 58.5 4.2 26 118-143 26-51 (246)
275 2yv5_A YJEQ protein; hydrolase 96.2 0.0023 8E-08 61.5 3.5 64 107-175 156-225 (302)
276 4a8j_A Elongator complex prote 96.2 0.0012 4.2E-08 64.7 1.5 38 97-137 18-55 (361)
277 1u0l_A Probable GTPase ENGC; p 96.2 0.0017 5.7E-08 62.5 2.4 65 107-175 160-230 (301)
278 2wwf_A Thymidilate kinase, put 96.2 0.0057 1.9E-07 54.7 5.8 38 115-152 6-43 (212)
279 1np6_A Molybdopterin-guanine d 96.2 0.0058 2E-07 53.9 5.7 39 116-154 3-41 (174)
280 1tq4_A IIGP1, interferon-induc 96.2 0.0013 4.4E-08 66.2 1.6 28 119-147 69-96 (413)
281 1ojl_A Transcriptional regulat 96.2 0.014 4.9E-07 55.9 9.0 42 119-160 25-66 (304)
282 2qgz_A Helicase loader, putati 96.2 0.0052 1.8E-07 59.2 5.7 38 119-156 152-190 (308)
283 3pvs_A Replication-associated 96.2 0.014 4.9E-07 59.2 9.2 69 120-210 51-119 (447)
284 1yrb_A ATP(GTP)binding protein 96.2 0.0057 2E-07 56.7 5.8 40 117-157 12-51 (262)
285 3umf_A Adenylate kinase; rossm 96.2 0.0026 9E-08 58.2 3.4 47 100-156 15-61 (217)
286 2axn_A 6-phosphofructo-2-kinas 96.1 0.036 1.2E-06 57.4 12.2 39 118-156 34-72 (520)
287 3ney_A 55 kDa erythrocyte memb 96.1 0.0036 1.2E-07 56.5 4.0 26 117-142 17-42 (197)
288 2r5u_A Replicative DNA helicas 96.1 0.00048 1.6E-08 62.4 -1.9 74 2-81 123-197 (200)
289 3kb2_A SPBC2 prophage-derived 96.1 0.0037 1.3E-07 53.8 3.9 23 121-143 3-25 (173)
290 1jr3_A DNA polymerase III subu 96.1 0.0075 2.6E-07 58.8 6.4 25 120-144 39-63 (373)
291 3e1s_A Exodeoxyribonuclease V, 96.1 0.0021 7.2E-08 67.5 2.5 38 118-155 203-240 (574)
292 4e22_A Cytidylate kinase; P-lo 96.1 0.0041 1.4E-07 58.1 4.2 27 117-143 25-51 (252)
293 3pfi_A Holliday junction ATP-d 96.0 0.035 1.2E-06 53.5 11.0 63 121-210 57-119 (338)
294 2v54_A DTMP kinase, thymidylat 96.0 0.0057 1.9E-07 54.4 4.9 36 117-154 2-37 (204)
295 2qag_B Septin-6, protein NEDD5 96.0 0.0028 9.6E-08 63.9 3.1 28 115-143 36-65 (427)
296 2pbr_A DTMP kinase, thymidylat 96.0 0.0068 2.3E-07 53.2 5.3 34 121-154 2-35 (195)
297 2p67_A LAO/AO transport system 96.0 0.0059 2E-07 59.7 5.4 42 116-157 53-94 (341)
298 1ly1_A Polynucleotide kinase; 96.0 0.0038 1.3E-07 54.2 3.6 32 120-155 3-34 (181)
299 3kta_A Chromosome segregation 96.0 0.0047 1.6E-07 54.1 4.1 26 116-143 24-49 (182)
300 1y63_A LMAJ004144AAA protein; 96.0 0.0051 1.7E-07 54.3 4.4 27 116-142 7-33 (184)
301 1qvr_A CLPB protein; coiled co 96.0 0.021 7.2E-07 62.7 10.2 84 120-210 589-673 (854)
302 2p5t_B PEZT; postsegregational 96.0 0.0032 1.1E-07 58.8 3.1 38 117-157 30-67 (253)
303 2c95_A Adenylate kinase 1; tra 96.0 0.0051 1.8E-07 54.2 4.3 26 118-143 8-33 (196)
304 3trf_A Shikimate kinase, SK; a 96.0 0.0051 1.7E-07 53.9 4.1 26 118-143 4-29 (185)
305 2z0h_A DTMP kinase, thymidylat 95.9 0.0078 2.7E-07 53.1 5.3 33 121-153 2-34 (197)
306 3zvl_A Bifunctional polynucleo 95.9 0.017 5.7E-07 58.1 8.3 34 118-156 257-290 (416)
307 3t61_A Gluconokinase; PSI-biol 95.9 0.0048 1.6E-07 55.1 3.8 36 119-159 18-53 (202)
308 3iij_A Coilin-interacting nucl 95.9 0.0051 1.7E-07 53.8 3.9 28 116-143 8-35 (180)
309 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 54.3 3.7 25 119-143 3-27 (196)
310 3cr8_A Sulfate adenylyltranfer 95.9 0.0042 1.5E-07 64.8 3.9 41 116-156 366-407 (552)
311 3lw7_A Adenylate kinase relate 95.9 0.0041 1.4E-07 53.4 3.2 20 120-139 2-21 (179)
312 1a5t_A Delta prime, HOLB; zinc 95.9 0.023 7.9E-07 55.1 8.8 85 120-210 25-121 (334)
313 2f1r_A Molybdopterin-guanine d 95.9 0.0037 1.3E-07 55.0 2.8 38 120-157 3-42 (171)
314 3pxi_A Negative regulator of g 95.9 0.018 6.1E-07 62.3 8.8 70 121-210 523-592 (758)
315 3llm_A ATP-dependent RNA helic 95.9 0.048 1.7E-06 49.8 10.6 40 116-155 73-117 (235)
316 1t9h_A YLOQ, probable GTPase E 95.8 0.0013 4.3E-08 63.7 -0.5 37 116-153 170-206 (307)
317 2ze6_A Isopentenyl transferase 95.8 0.0056 1.9E-07 57.2 3.8 23 121-143 3-25 (253)
318 2iut_A DNA translocase FTSK; n 95.8 0.022 7.6E-07 59.3 8.5 40 118-157 213-256 (574)
319 2www_A Methylmalonic aciduria 95.8 0.0098 3.4E-07 58.3 5.7 40 117-156 72-111 (349)
320 1cke_A CK, MSSA, protein (cyti 95.8 0.0073 2.5E-07 54.7 4.4 25 119-143 5-29 (227)
321 1odf_A YGR205W, hypothetical 3 95.8 0.0055 1.9E-07 58.6 3.7 29 117-145 29-57 (290)
322 1gtv_A TMK, thymidylate kinase 95.7 0.0039 1.3E-07 55.9 2.5 34 121-154 2-35 (214)
323 1zd8_A GTP:AMP phosphotransfer 95.7 0.0059 2E-07 55.7 3.7 29 115-143 3-31 (227)
324 2fna_A Conserved hypothetical 95.7 0.037 1.3E-06 53.1 9.6 35 120-157 31-65 (357)
325 1aky_A Adenylate kinase; ATP:A 95.7 0.0073 2.5E-07 54.7 4.2 26 118-143 3-28 (220)
326 2vli_A Antibiotic resistance p 95.7 0.0045 1.5E-07 54.0 2.5 26 118-143 4-29 (183)
327 2cdn_A Adenylate kinase; phosp 95.7 0.0083 2.8E-07 53.5 4.3 26 118-143 19-44 (201)
328 3mfy_A V-type ATP synthase alp 95.7 0.031 1.1E-06 57.8 8.9 59 97-160 208-267 (588)
329 1hqc_A RUVB; extended AAA-ATPa 95.6 0.053 1.8E-06 51.7 10.3 65 120-210 39-103 (324)
330 2gno_A DNA polymerase III, gam 95.6 0.027 9.4E-07 54.1 8.1 72 119-210 18-95 (305)
331 2bwj_A Adenylate kinase 5; pho 95.6 0.0083 2.8E-07 53.0 4.0 26 118-143 11-36 (199)
332 1qvr_A CLPB protein; coiled co 95.6 0.034 1.2E-06 61.1 9.6 79 120-211 192-277 (854)
333 4ag6_A VIRB4 ATPase, type IV s 95.6 0.014 4.6E-07 58.0 5.9 51 117-168 33-83 (392)
334 3fwy_A Light-independent proto 95.6 0.012 4E-07 56.9 5.2 42 116-157 45-86 (314)
335 3sr0_A Adenylate kinase; phosp 95.5 0.0084 2.9E-07 54.4 3.9 31 121-156 2-32 (206)
336 1cp2_A CP2, nitrogenase iron p 95.5 0.013 4.3E-07 54.7 5.2 37 121-157 3-39 (269)
337 1uj2_A Uridine-cytidine kinase 95.5 0.011 3.9E-07 54.8 4.7 38 120-157 23-65 (252)
338 4edh_A DTMP kinase, thymidylat 95.5 0.015 5.1E-07 53.0 5.3 37 117-153 4-40 (213)
339 1um8_A ATP-dependent CLP prote 95.4 0.015 5E-07 57.4 5.6 36 118-156 71-106 (376)
340 3ea0_A ATPase, para family; al 95.4 0.016 5.6E-07 52.9 5.6 41 118-158 3-45 (245)
341 3bfv_A CAPA1, CAPB2, membrane 95.4 0.02 6.9E-07 54.0 6.2 41 118-158 81-122 (271)
342 2jaq_A Deoxyguanosine kinase; 95.4 0.0099 3.4E-07 52.6 3.8 23 121-143 2-24 (205)
343 3cio_A ETK, tyrosine-protein k 95.4 0.019 6.7E-07 54.9 6.0 41 118-158 103-144 (299)
344 1via_A Shikimate kinase; struc 95.4 0.0097 3.3E-07 51.8 3.6 23 121-143 6-28 (175)
345 1jjv_A Dephospho-COA kinase; P 95.3 0.009 3.1E-07 53.4 3.4 21 121-141 4-24 (206)
346 1lw7_A Transcriptional regulat 95.3 0.0072 2.5E-07 59.5 3.0 31 115-146 164-196 (365)
347 1r6b_X CLPA protein; AAA+, N-t 95.3 0.078 2.7E-06 57.2 11.3 80 121-210 490-570 (758)
348 1zak_A Adenylate kinase; ATP:A 95.3 0.01 3.6E-07 53.7 3.8 26 118-143 4-29 (222)
349 2iyv_A Shikimate kinase, SK; t 95.3 0.0092 3.1E-07 52.3 3.3 24 120-143 3-26 (184)
350 2afh_E Nitrogenase iron protei 95.3 0.016 5.3E-07 54.9 5.1 38 121-158 4-41 (289)
351 3io3_A DEHA2D07832P; chaperone 95.3 0.033 1.1E-06 54.6 7.5 59 105-168 7-67 (348)
352 3vr4_D V-type sodium ATPase su 95.3 0.012 4E-07 59.6 4.3 46 97-145 132-177 (465)
353 3igf_A ALL4481 protein; two-do 95.3 0.054 1.8E-06 53.6 9.1 36 120-155 3-38 (374)
354 3kjh_A CO dehydrogenase/acetyl 95.3 0.011 3.7E-07 54.1 3.8 47 122-170 3-49 (254)
355 1a7j_A Phosphoribulokinase; tr 95.3 0.0092 3.2E-07 57.0 3.4 42 118-159 4-45 (290)
356 1bif_A 6-phosphofructo-2-kinas 95.3 0.13 4.3E-06 52.4 12.1 36 119-154 39-74 (469)
357 4b3f_X DNA-binding protein smu 95.3 0.016 5.4E-07 61.6 5.5 41 118-158 204-244 (646)
358 2if2_A Dephospho-COA kinase; a 95.3 0.01 3.6E-07 52.8 3.5 21 121-141 3-23 (204)
359 3ug7_A Arsenical pump-driving 95.2 0.034 1.2E-06 54.4 7.5 60 107-170 16-75 (349)
360 1qf9_A UMP/CMP kinase, protein 95.2 0.012 4.1E-07 51.5 3.8 25 119-143 6-30 (194)
361 3be4_A Adenylate kinase; malar 95.2 0.011 3.9E-07 53.5 3.7 26 118-143 4-29 (217)
362 1in4_A RUVB, holliday junction 95.2 0.011 3.8E-07 57.4 3.8 24 120-143 52-75 (334)
363 3nwj_A ATSK2; P loop, shikimat 95.2 0.0074 2.5E-07 56.4 2.5 29 115-143 41-72 (250)
364 3v9p_A DTMP kinase, thymidylat 95.2 0.016 5.6E-07 53.3 4.6 39 115-153 21-63 (227)
365 3fb4_A Adenylate kinase; psych 95.2 0.013 4.4E-07 52.7 3.9 23 121-143 2-24 (216)
366 1zuh_A Shikimate kinase; alpha 95.2 0.014 4.8E-07 50.3 4.0 24 120-143 8-31 (168)
367 3q9l_A Septum site-determining 95.2 0.021 7.3E-07 52.6 5.4 38 120-157 3-41 (260)
368 1ukz_A Uridylate kinase; trans 95.1 0.013 4.3E-07 52.2 3.7 25 119-143 15-39 (203)
369 3tlx_A Adenylate kinase 2; str 95.1 0.014 4.6E-07 54.1 3.9 26 118-143 28-53 (243)
370 2r2a_A Uncharacterized protein 95.1 0.019 6.5E-07 51.7 4.7 25 120-144 6-30 (199)
371 1vt4_I APAF-1 related killer D 95.1 0.078 2.7E-06 59.1 10.3 54 105-160 138-194 (1221)
372 3la6_A Tyrosine-protein kinase 95.1 0.028 9.7E-07 53.5 6.1 41 118-158 91-132 (286)
373 2dy1_A Elongation factor G; tr 95.1 0.039 1.3E-06 58.9 7.8 28 116-143 6-33 (665)
374 1e6c_A Shikimate kinase; phosp 95.0 0.013 4.3E-07 50.6 3.3 24 120-143 3-26 (173)
375 3lv8_A DTMP kinase, thymidylat 95.0 0.026 8.8E-07 52.2 5.5 39 115-153 23-62 (236)
376 1q3t_A Cytidylate kinase; nucl 95.0 0.018 6.1E-07 52.8 4.4 29 115-143 12-40 (236)
377 1ofh_A ATP-dependent HSL prote 95.0 0.022 7.4E-07 53.9 5.1 34 120-156 51-84 (310)
378 3dl0_A Adenylate kinase; phosp 95.0 0.014 4.9E-07 52.4 3.6 23 121-143 2-24 (216)
379 2oze_A ORF delta'; para, walke 95.0 0.02 6.9E-07 54.2 4.8 41 118-158 33-76 (298)
380 2qmh_A HPR kinase/phosphorylas 95.0 0.013 4.3E-07 52.9 3.1 26 118-143 33-58 (205)
381 3vr4_A V-type sodium ATPase ca 94.9 0.038 1.3E-06 57.3 6.9 43 97-142 213-255 (600)
382 1nij_A Hypothetical protein YJ 94.9 0.017 6E-07 55.7 4.1 23 120-143 5-27 (318)
383 1pui_A ENGB, probable GTP-bind 94.9 0.0072 2.4E-07 53.8 1.3 24 116-139 23-46 (210)
384 3d3q_A TRNA delta(2)-isopenten 94.8 0.026 8.9E-07 55.1 5.2 32 120-156 8-39 (340)
385 3k9g_A PF-32 protein; ssgcid, 94.8 0.021 7.3E-07 53.1 4.5 40 118-158 26-66 (267)
386 2c9o_A RUVB-like 1; hexameric 94.8 0.025 8.5E-07 57.4 5.3 80 115-211 59-140 (456)
387 1hyq_A MIND, cell division inh 94.8 0.031 1.1E-06 51.8 5.5 36 122-157 6-41 (263)
388 1ofu_X SULA, hypothetical prot 94.8 0.36 1.2E-05 39.6 11.3 86 119-204 2-90 (119)
389 1ak2_A Adenylate kinase isoenz 94.8 0.022 7.5E-07 52.1 4.4 26 118-143 15-40 (233)
390 2pt5_A Shikimate kinase, SK; a 94.8 0.02 6.7E-07 49.2 3.8 23 121-143 2-24 (168)
391 4tmk_A Protein (thymidylate ki 94.8 0.033 1.1E-06 50.6 5.5 35 118-152 2-37 (213)
392 1qhl_A Protein (cell division 94.8 0.0018 6E-08 59.9 -3.2 35 120-155 28-62 (227)
393 3r20_A Cytidylate kinase; stru 94.8 0.019 6.5E-07 53.1 3.8 25 119-143 9-33 (233)
394 2o5v_A DNA replication and rep 94.7 0.018 6.2E-07 56.7 3.8 25 116-142 24-48 (359)
395 1ex7_A Guanylate kinase; subst 94.7 0.017 5.7E-07 51.5 3.3 24 120-143 2-25 (186)
396 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.022 7.6E-07 48.6 3.9 21 121-141 25-45 (149)
397 2wsm_A Hydrogenase expression/ 94.7 0.034 1.2E-06 49.9 5.4 37 120-157 31-67 (221)
398 2c61_A A-type ATP synthase non 94.7 0.021 7E-07 58.1 4.2 45 97-144 133-177 (469)
399 1u0j_A DNA replication protein 94.7 0.031 1.1E-06 52.6 5.2 36 107-143 93-128 (267)
400 1w1w_A Structural maintenance 94.7 0.021 7.3E-07 57.4 4.4 28 116-144 23-50 (430)
401 2woj_A ATPase GET3; tail-ancho 94.7 0.04 1.4E-06 54.0 6.2 51 105-158 7-59 (354)
402 1g3q_A MIND ATPase, cell divis 94.6 0.031 1.1E-06 50.8 5.0 38 120-157 3-41 (237)
403 1uf9_A TT1252 protein; P-loop, 94.6 0.02 7E-07 50.6 3.6 23 119-141 8-30 (203)
404 3gqb_B V-type ATP synthase bet 94.6 0.017 5.7E-07 58.5 3.3 45 97-144 128-172 (464)
405 3k1j_A LON protease, ATP-depen 94.6 0.026 8.8E-07 59.5 4.9 38 118-155 59-96 (604)
406 2xb4_A Adenylate kinase; ATP-b 94.6 0.022 7.4E-07 51.9 3.8 23 121-143 2-24 (223)
407 1ihu_A Arsenical pump-driving 94.6 0.037 1.2E-06 58.0 6.1 40 118-157 7-46 (589)
408 3a8t_A Adenylate isopentenyltr 94.6 0.015 5.3E-07 56.6 2.9 27 117-143 38-64 (339)
409 3m6a_A ATP-dependent protease 94.6 0.022 7.5E-07 59.3 4.2 26 118-143 107-132 (543)
410 3ld9_A DTMP kinase, thymidylat 94.6 0.026 8.9E-07 51.8 4.2 40 117-156 19-59 (223)
411 2r62_A Cell division protease 94.5 0.012 3.9E-07 54.9 1.8 22 122-143 47-68 (268)
412 1ihu_A Arsenical pump-driving 94.5 0.029 9.8E-07 58.9 5.0 51 105-157 313-365 (589)
413 1vht_A Dephospho-COA kinase; s 94.5 0.023 7.7E-07 51.3 3.7 24 118-141 3-26 (218)
414 3cwq_A Para family chromosome 94.5 0.037 1.3E-06 49.8 5.1 36 122-158 4-39 (209)
415 3upu_A ATP-dependent DNA helic 94.5 0.022 7.5E-07 57.9 3.9 36 121-156 47-83 (459)
416 1ni3_A YCHF GTPase, YCHF GTP-b 94.5 0.036 1.2E-06 55.2 5.4 28 114-142 15-42 (392)
417 1r6b_X CLPA protein; AAA+, N-t 94.5 0.17 6E-06 54.4 11.2 28 118-145 206-233 (758)
418 2ph1_A Nucleotide-binding prot 94.4 0.037 1.2E-06 51.6 5.0 41 119-159 18-59 (262)
419 1e4v_A Adenylate kinase; trans 94.4 0.026 8.9E-07 50.8 3.8 23 121-143 2-24 (214)
420 2va8_A SSO2462, SKI2-type heli 94.3 0.2 6.7E-06 53.6 11.0 42 115-156 42-84 (715)
421 3ake_A Cytidylate kinase; CMP 94.2 0.03 1E-06 49.6 3.9 23 121-143 4-26 (208)
422 3gqb_A V-type ATP synthase alp 94.2 0.039 1.3E-06 57.0 5.0 44 97-143 202-245 (578)
423 3hws_A ATP-dependent CLP prote 94.2 0.041 1.4E-06 53.8 5.0 35 118-155 50-84 (363)
424 2woo_A ATPase GET3; tail-ancho 94.1 0.062 2.1E-06 52.1 6.0 40 119-158 19-58 (329)
425 3sfz_A APAF-1, apoptotic pepti 94.1 0.082 2.8E-06 59.6 7.9 101 105-207 134-246 (1249)
426 3exa_A TRNA delta(2)-isopenten 94.1 0.028 9.5E-07 54.3 3.3 25 119-143 3-27 (322)
427 1ltq_A Polynucleotide kinase; 94.0 0.03 1E-06 53.1 3.6 32 120-155 3-34 (301)
428 3crm_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 54.3 3.5 24 120-143 6-29 (323)
429 1byi_A Dethiobiotin synthase; 94.0 0.056 1.9E-06 48.6 5.2 35 121-155 3-38 (224)
430 2ga8_A Hypothetical 39.9 kDa p 93.9 0.035 1.2E-06 54.4 3.9 26 118-143 21-48 (359)
431 2grj_A Dephospho-COA kinase; T 93.9 0.038 1.3E-06 49.3 3.7 25 118-142 11-35 (192)
432 2hf9_A Probable hydrogenase ni 93.9 0.051 1.8E-06 48.9 4.7 34 120-154 39-72 (226)
433 1x6v_B Bifunctional 3'-phospho 93.9 0.053 1.8E-06 57.2 5.4 38 118-155 51-88 (630)
434 3tqf_A HPR(Ser) kinase; transf 93.8 0.035 1.2E-06 48.9 3.3 23 119-141 16-38 (181)
435 3foz_A TRNA delta(2)-isopenten 93.8 0.036 1.2E-06 53.4 3.7 25 119-143 10-34 (316)
436 1e9r_A Conjugal transfer prote 93.8 0.052 1.8E-06 54.5 5.1 39 119-157 53-91 (437)
437 2gj8_A MNME, tRNA modification 93.8 0.033 1.1E-06 48.1 3.2 23 118-140 3-25 (172)
438 4dcu_A GTP-binding protein ENG 93.8 0.08 2.7E-06 53.6 6.5 19 121-139 25-43 (456)
439 1oix_A RAS-related protein RAB 93.8 0.038 1.3E-06 48.6 3.5 22 121-142 31-52 (191)
440 2f9l_A RAB11B, member RAS onco 93.7 0.038 1.3E-06 48.8 3.3 22 121-142 7-28 (199)
441 2jlq_A Serine protease subunit 93.6 0.32 1.1E-05 49.0 10.6 38 118-155 18-56 (451)
442 2f6r_A COA synthase, bifunctio 93.5 0.042 1.4E-06 52.0 3.4 22 119-140 75-96 (281)
443 2zj8_A DNA helicase, putative 93.4 0.3 1E-05 52.3 10.5 95 116-210 36-151 (720)
444 3tmk_A Thymidylate kinase; pho 93.4 0.062 2.1E-06 48.9 4.4 29 117-145 3-31 (216)
445 4hlc_A DTMP kinase, thymidylat 93.4 0.077 2.6E-06 47.8 5.0 34 119-153 2-35 (205)
446 2v6i_A RNA helicase; membrane, 93.3 0.33 1.1E-05 48.7 10.0 38 118-155 1-39 (431)
447 2ocp_A DGK, deoxyguanosine kin 93.3 0.047 1.6E-06 50.1 3.5 26 118-143 1-26 (241)
448 2xj4_A MIPZ; replication, cell 93.3 0.065 2.2E-06 50.6 4.4 38 120-157 5-43 (286)
449 1m8p_A Sulfate adenylyltransfe 93.2 0.076 2.6E-06 55.6 5.3 40 117-156 394-434 (573)
450 2wji_A Ferrous iron transport 93.2 0.055 1.9E-06 46.2 3.4 21 121-141 5-25 (165)
451 2qnr_A Septin-2, protein NEDD5 93.0 0.037 1.3E-06 53.0 2.3 20 122-141 21-40 (301)
452 3eph_A TRNA isopentenyltransfe 92.9 0.06 2.1E-06 53.7 3.7 24 120-143 3-26 (409)
453 2zej_A Dardarin, leucine-rich 92.8 0.049 1.7E-06 47.4 2.6 21 121-141 4-24 (184)
454 2gks_A Bifunctional SAT/APS ki 92.8 0.091 3.1E-06 54.6 5.1 38 119-156 372-409 (546)
455 3hjn_A DTMP kinase, thymidylat 92.8 0.12 4.1E-06 46.2 5.2 34 121-154 2-35 (197)
456 2p6r_A Afuhel308 helicase; pro 92.7 0.21 7.3E-06 53.3 8.0 39 118-156 39-77 (702)
457 2gk6_A Regulator of nonsense t 92.7 0.084 2.9E-06 55.8 4.7 39 119-157 195-234 (624)
458 3qks_A DNA double-strand break 92.7 0.078 2.7E-06 47.6 3.8 20 120-139 24-43 (203)
459 2chq_A Replication factor C sm 92.5 0.098 3.4E-06 49.4 4.5 34 122-155 41-76 (319)
460 1kao_A RAP2A; GTP-binding prot 92.4 0.069 2.4E-06 44.8 3.0 22 121-142 5-26 (167)
461 2ce2_X GTPase HRAS; signaling 92.3 0.072 2.4E-06 44.5 3.0 21 122-142 6-26 (166)
462 2wjg_A FEOB, ferrous iron tran 92.3 0.075 2.5E-06 46.0 3.2 21 121-141 9-29 (188)
463 1z2a_A RAS-related protein RAB 92.3 0.076 2.6E-06 44.7 3.2 22 121-142 7-28 (168)
464 2h92_A Cytidylate kinase; ross 92.3 0.077 2.6E-06 47.6 3.3 25 119-143 3-27 (219)
465 3pg5_A Uncharacterized protein 92.3 0.061 2.1E-06 52.8 2.8 39 121-159 3-42 (361)
466 3ch4_B Pmkase, phosphomevalona 92.3 0.25 8.7E-06 44.4 6.7 56 118-175 10-65 (202)
467 3pxg_A Negative regulator of g 92.3 0.088 3E-06 53.6 4.1 28 118-145 200-227 (468)
468 2r44_A Uncharacterized protein 92.2 0.054 1.9E-06 52.1 2.2 34 119-155 46-79 (331)
469 2dyk_A GTP-binding protein; GT 92.1 0.083 2.8E-06 44.2 3.1 22 121-142 3-24 (161)
470 1iqp_A RFCS; clamp loader, ext 92.1 0.087 3E-06 50.0 3.6 24 121-144 48-71 (327)
471 1p5z_B DCK, deoxycytidine kina 92.1 0.038 1.3E-06 51.5 1.0 27 117-143 22-48 (263)
472 3ez2_A Plasmid partition prote 92.1 0.12 4.2E-06 51.1 4.8 40 118-157 107-153 (398)
473 3gmt_A Adenylate kinase; ssgci 92.1 0.094 3.2E-06 48.3 3.6 23 121-143 10-32 (230)
474 1u8z_A RAS-related protein RAL 92.0 0.083 2.8E-06 44.3 3.0 22 121-142 6-27 (168)
475 2nzj_A GTP-binding protein REM 91.9 0.091 3.1E-06 44.6 3.1 20 121-140 6-25 (175)
476 1r8s_A ADP-ribosylation factor 91.9 0.1 3.6E-06 43.8 3.5 21 122-142 3-23 (164)
477 1ek0_A Protein (GTP-binding pr 91.9 0.088 3E-06 44.3 3.0 21 122-142 6-26 (170)
478 3q85_A GTP-binding protein REM 91.8 0.097 3.3E-06 44.2 3.2 19 122-140 5-23 (169)
479 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.093 3.2E-06 44.7 3.0 22 121-142 9-30 (177)
480 2erx_A GTP-binding protein DI- 91.7 0.099 3.4E-06 44.1 3.1 21 121-141 5-25 (172)
481 1z08_A RAS-related protein RAB 91.6 0.094 3.2E-06 44.3 2.9 22 121-142 8-29 (170)
482 1ega_A Protein (GTP-binding pr 91.6 0.078 2.7E-06 50.6 2.6 22 119-140 8-29 (301)
483 1g16_A RAS-related protein SEC 91.6 0.11 3.7E-06 43.8 3.3 20 122-141 6-25 (170)
484 1g8p_A Magnesium-chelatase 38 91.6 0.055 1.9E-06 52.1 1.5 23 122-144 48-70 (350)
485 3qkt_A DNA double-strand break 91.6 0.11 3.9E-06 50.3 3.8 22 120-141 24-45 (339)
486 1ky3_A GTP-binding protein YPT 91.6 0.098 3.4E-06 44.6 3.0 22 121-142 10-31 (182)
487 1c1y_A RAS-related protein RAP 91.6 0.11 3.6E-06 43.7 3.2 21 122-142 6-26 (167)
488 1z0j_A RAB-22, RAS-related pro 91.5 0.1 3.4E-06 44.0 3.0 22 121-142 8-29 (170)
489 1r2q_A RAS-related protein RAB 91.5 0.1 3.6E-06 43.8 3.0 22 121-142 8-29 (170)
490 1g41_A Heat shock protein HSLU 91.5 0.1 3.5E-06 52.7 3.4 23 121-143 52-74 (444)
491 2vf7_A UVRA2, excinuclease ABC 91.4 0.063 2.1E-06 58.6 1.9 26 116-141 33-58 (842)
492 2ged_A SR-beta, signal recogni 91.4 0.12 3.9E-06 45.0 3.3 25 118-142 47-71 (193)
493 2hjg_A GTP-binding protein ENG 91.4 0.26 9E-06 49.4 6.4 20 121-140 5-24 (436)
494 3q72_A GTP-binding protein RAD 91.3 0.11 3.6E-06 43.8 2.9 19 122-140 5-23 (166)
495 1upt_A ARL1, ADP-ribosylation 91.2 0.11 3.9E-06 43.8 3.0 23 119-141 7-29 (171)
496 3con_A GTPase NRAS; structural 91.2 0.13 4.3E-06 44.6 3.3 22 121-142 23-44 (190)
497 2hxs_A RAB-26, RAS-related pro 91.2 0.11 3.7E-06 44.3 2.9 22 121-142 8-29 (178)
498 2fn4_A P23, RAS-related protei 91.1 0.11 3.9E-06 44.2 3.0 22 121-142 11-32 (181)
499 3ihw_A Centg3; RAS, centaurin, 91.1 0.11 3.9E-06 45.2 3.0 23 121-143 22-44 (184)
500 2y8e_A RAB-protein 6, GH09086P 91.1 0.12 4.2E-06 43.9 3.1 22 121-142 16-37 (179)
No 1
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-54 Score=431.39 Aligned_cols=331 Identities=51% Similarity=0.833 Sum_probs=302.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 63 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 63 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
.++.++|..++.+|++.||++.+|++++......+.++|||++.||.+||+|||++|++++|+||||+||||||++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 5 KQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999998874222238999999999999998899999999999999999999999999999
Q ss_pred hhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccch
Q 014268 143 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 222 (427)
Q Consensus 143 ~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~ 222 (427)
++..++.|+|+++|++.++.+++++|++++++.+..+.+.++++..++.++....++++|||+++.+.+..++++.+|+.
T Consensus 85 ~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~ 164 (356)
T 3hr8_A 85 AQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDM 164 (356)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSS
T ss_pred HHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhh
Confidence 98888899999999999989999999999999999999999999999888888889999999999999767788877887
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccc
Q 014268 223 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 302 (427)
Q Consensus 223 ~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~ 302 (427)
+++.+++.+++.++.|...+++++++||++||++..++. +|++| ..+.||++|+|++|+|+.+.+...++++++..++
T Consensus 165 q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~-~fg~p-~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~ 242 (356)
T 3hr8_A 165 QVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGV-MFGSP-ETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGN 242 (356)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSS-SSCSC-SSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccc-ccCCc-ccCCCcchhhhhCcEEEEEEeccccccCCccccc
Confidence 777889999999999999999999999999999888776 67777 5789999999999999999998777777766677
Q ss_pred eEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEe-----cCccc-ccHHHHHHHHhhCHHH
Q 014268 303 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTY-----NDRNF-RGKEAFKQFLVENESV 376 (427)
Q Consensus 303 ~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~-----~~~~~-~~~~~~~~~l~~~~~~ 376 (427)
.+.++++|||++||+..+.|+|.|++|+++..++++++.++|+|.++|+||+| +++++ ||++.+..||++||++
T Consensus 243 ~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~w~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~ 322 (356)
T 3hr8_A 243 VISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSLGQGSSNAVQFLKDNPEI 322 (356)
T ss_dssp EEEEEEEEESSSCCCCEEEEEEETTTBSCHHHHHHHHHHHTTSSEEETTEEEEECTTSCEEEEEEHHHHHHHHHHHCHHH
T ss_pred EEEEEEEeCCCCCCCceEEEEEeeCCCcChhccHHHHHHHcChhhccCcEEEEEccCCCceeeccCHHHHHHHHHHCHHH
Confidence 78999999999999999999999999999999999999999999999999999 78888 9999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCC
Q 014268 377 REELVIKLREKLVVDHKEP 395 (427)
Q Consensus 377 ~~el~~~i~~~~~~~~~~~ 395 (427)
+++|+.+|++++.....++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~ 341 (356)
T 3hr8_A 323 AGEIERRIREKYGLLSVEK 341 (356)
T ss_dssp HHHHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHhCCCccch
Confidence 9999999999987655554
No 2
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=100.00 E-value=1.3e-52 Score=419.92 Aligned_cols=328 Identities=50% Similarity=0.840 Sum_probs=274.4
Q ss_pred chhHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 62 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 62 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
..++.++|..++++|++.|+++++|.+++. ....+.++|||++.||.+|++|||++|++++|+|+||+||||||++++.
T Consensus 18 ~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 18 AKERSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 346788999999999999999999998874 4557899999999999999778999999999999999999999999999
Q ss_pred HhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccc
Q 014268 142 EAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD 221 (427)
Q Consensus 142 ~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~ 221 (427)
+++..+..|+||++|+++++.+++++|++++++.+.++.+.+++++.++.+++.+.+++|||||++.+.+..++++.+++
T Consensus 97 ~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd 176 (366)
T 1xp8_A 97 QAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGD 176 (366)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC------
T ss_pred HHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhcccccccccccc
Confidence 99988889999999999998889999999999999999999999999998888888999999999999865555543333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc-cccCcccc
Q 014268 222 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL-VKKGEETI 300 (427)
Q Consensus 222 ~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~-~~~~~~~~ 300 (427)
.+.+.+++.+++.++.|...+++++|+||++||+++.++. +|++| .+|.+|.+|+|+||+|++|+|..+ ++.+++..
T Consensus 177 ~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~-~fg~p-~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~ 254 (366)
T 1xp8_A 177 SLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGV-MYGNP-ETTTGGRALKFYASVRLDVRKIGQPTKVGNDAV 254 (366)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-----------------CHHHHHHHCSEEEEEEEESCCC------C
T ss_pred chhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCc-ccCCc-cccCCcchhhheeeEEEEEEecchhcccCcccc
Confidence 2222456788999999999999999999999999998876 45555 678899999999999999999987 76655445
Q ss_pred cceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHH
Q 014268 301 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREE 379 (427)
Q Consensus 301 g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~e 379 (427)
|..+.++|+|||++||+..+.|+|.|+.|+.++.++++++.+.+++.++|+||+|.++++ ||++.+..||++||+++++
T Consensus 255 g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~~~l~~~~~~~~~~k~g~w~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 334 (366)
T 1xp8_A 255 ANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQE 334 (366)
T ss_dssp EEEEEEEEEEESSSCCCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHH
T ss_pred CCEEEEEEEcCCCCCCCceEEEEEEeCCCcccchhHHHHHHHhCeeeccCceeeECCeEecchHHHHHHHHHhCHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 014268 380 LVIKLREKLVVDH 392 (427)
Q Consensus 380 l~~~i~~~~~~~~ 392 (427)
|+.++++++..++
T Consensus 335 ~~~~~~~~~~~~~ 347 (366)
T 1xp8_A 335 IRDRVMAAIRAGN 347 (366)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhcCCC
Confidence 9999999986543
No 3
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=3.5e-53 Score=488.16 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=300.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++++|..++.+|++.||++++|++++. ....++.+|||...||.+||+||+|+|++++|+||.+|||||||||+++.+
T Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A 1721 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcceEECCCC-cccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence 6788999999999999999999999984 456799999999999999999999999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
++.|+.++|||.|+..++.+++.+|++.+++++.+|++.++.++++..+++.+.+++|||||++++.|+.++++++|+.+
T Consensus 1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A 1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.++|.|+++||+|...+.+.+|++|++||++.+++. +|++| ++++||+++.+||++|+.++|...++++++..|++
T Consensus 1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~~~-~~~~~-~~~~gg~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 1957 (2050)
T 3cmu_A 1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1957 (2050)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC---------CC-CCCSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHhcc-ccCCC-CCcCCcchhheeeeeeeeeeeecccccCCeeeeeE
Confidence 99999999999999999999999999999999999998 89998 78999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
+.++|+||+.+||++.+.|.|.|+.||++..+++|++.+.++++|+|+||+|+++++ ||++.+..||++||+++++|+.
T Consensus 1958 ~~~~~~k~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2037 (2050)
T 3cmu_A 1958 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 2037 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEecCCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEeeeeEEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 014268 383 KLREKLV 389 (427)
Q Consensus 383 ~i~~~~~ 389 (427)
+|++++.
T Consensus 2038 ~~~~~~~ 2044 (2050)
T 3cmu_A 2038 KVRELLL 2044 (2050)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999864
No 4
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=100.00 E-value=2.7e-51 Score=409.17 Aligned_cols=336 Identities=55% Similarity=0.878 Sum_probs=276.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.++|..++++|++.|++++++.+++. ....+.++|||++.||.+|++|||++|++++|+|+||+||||||++++..+
T Consensus 9 ~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 9 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp -CHHHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceEcccc-ccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556999999999999999999998874 456789999999999999976799999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
+..+.+|+||++|+++++.+++++|++++++.+.++.+.+++++.++.+++..++++|||||++.+.+..++++.+++..
T Consensus 88 ~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~ 167 (356)
T 1u94_A 88 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 167 (356)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-----
T ss_pred HHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccch
Confidence 98888999999999999888999999999999888888999999888888788899999999999985444444333322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.+++.+++.++.|...+++++|+||++||+++.++. +|++| .+|.+|++|+|+||+|++++|.++++.+++..+..
T Consensus 168 ~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~-~fg~~-~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~ 245 (356)
T 1u94_A 168 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 245 (356)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc-ccCCC-cccCCCcceeeeccEEEEEEEeeeeccCccccCcE
Confidence 22456788899999999999999999999999998876 46555 67889999999999999999998887765555677
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
+.++|+|||++||+..+.|.|.|+.||.+..++++++.+.+++.++|+||+|.++++ |+++.+..||++||+++++|+.
T Consensus 246 ~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~~~~~l~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~ 325 (356)
T 1u94_A 246 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 325 (356)
T ss_dssp EEEEEEEESSBCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEECCCccCCCCCcEEEEEEcCCCcCcCcchHHHHHHhchhcCcceeEeeCCccHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhcc---CCCCCccccCCC
Q 014268 383 KLREKLVV---DHKEPQTAVTDE 402 (427)
Q Consensus 383 ~i~~~~~~---~~~~~~~~~~~~ 402 (427)
+++++++. +.++...+|++|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
T 1u94_A 326 KVRELLLSNPNSTPDFSVDDSEG 348 (356)
T ss_dssp HHHHHHSCCC-------------
T ss_pred HHHHHhccCCCCCCCcccccccc
Confidence 99999842 233444444443
No 5
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=2e-51 Score=469.85 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=297.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+..++|..++.+|++.||++++|.+++. ....++.+|||+..||.+||.||+|+|.+++|+||+|+||||||+++++.+
T Consensus 1377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1377 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCccEEECCCC-CCCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5677999999999999999999999974 345689999999999999998899999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
++.|+.++||+.|+..++.+++.+|++++++.+.+|.+.++.++.+..+++.+.+++|||||+.++.|..++++++|+.+
T Consensus 1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A 1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.++|.|+++|++|...+++.+|++|++||++.+++. +|++| ++++||+++.++|++|+.++|...++++++..|++
T Consensus 1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~g~al~~~~~~r~~~~~~~~~~~~~~~~~~~ 1613 (1706)
T 3cmw_A 1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1613 (1706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---------CC-CCBSSCSHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccce-ecCCC-ccccCcceeeeeeeeeeeeeeccccccCCeeEeeE
Confidence 99999999999999999999999999999999999998 89988 78999999999999999999999999998889999
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
+.++|+||+.+||++.+.|.|.|+.||++..+++|++.+.++++|+|+||+|+++++ ||++.+..||++||+++++|+.
T Consensus 1614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1693 (1706)
T 3cmw_A 1614 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1693 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEecccCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEEeeeeEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 014268 383 KLREKLV 389 (427)
Q Consensus 383 ~i~~~~~ 389 (427)
+|++++.
T Consensus 1694 ~~~~~~~ 1700 (1706)
T 3cmw_A 1694 KVRELLL 1700 (1706)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999874
No 6
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=100.00 E-value=2.4e-49 Score=394.65 Aligned_cols=323 Identities=54% Similarity=0.938 Sum_probs=279.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.++|..++++|++.|++++++.+++. ....+.++|||++.||.+|++|||++|++++|+|+||+||||||++++..+
T Consensus 7 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 7 DREKALELAMAQIDKNFGKGSVMRLGEE-VRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceecccc-ccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999999999998874 445789999999999999987899999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
++.++.++|+++|++.++.+++++|++++++.+.++.+.+++++.++.++...++++||||+++.+.+..++++.+++.+
T Consensus 86 ~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~ 165 (349)
T 2zr9_A 86 QAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 165 (349)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----C
T ss_pred HhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccch
Confidence 98889999999999999888999999999999999999999999888888788899999999999985455554444322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.+++.+++.++.|...++++|++||++||+++.++. +|++| ..|.||++|+|+||++++++|.++++.++...+..
T Consensus 166 ~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~-~~~~p-~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~~ 243 (349)
T 2zr9_A 166 VGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGV-MFGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc-ccCCC-cccCCchHhhhccceEEEEEEeeeeecCccccCCE
Confidence 22456778899999998888999999999999998776 45566 57888999999999999999998887766555777
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
+.++|.|||++||+..+.|++.++.|+.+.+++++++.+.+++.++|+||+|.++++ |+++.+..||++||+++++|+.
T Consensus 244 ~~~~i~K~~~~p~~~~~~fdi~~~~Gi~~~~~~l~~g~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~ 323 (349)
T 2zr9_A 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENTDVANEIEK 323 (349)
T ss_dssp EEEEEEEESSSCCCCEEEEEEETTSCBCHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEeCCCccCCCCceEEEEEEeCCCcCccccHHHHHHhhchhcCcceEEEEcCccHHhHHHHHHHHHhhCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 014268 383 KLREKLV 389 (427)
Q Consensus 383 ~i~~~~~ 389 (427)
++++++.
T Consensus 324 ~~~~~~~ 330 (349)
T 2zr9_A 324 KIKEKLG 330 (349)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9999874
No 7
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=1.8e-46 Score=432.60 Aligned_cols=325 Identities=57% Similarity=0.911 Sum_probs=295.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++..+|..++++|++.|++++++.+++. ......++|||++.||.+||+|||++|++++|+||||+||||||++++.++
T Consensus 329 ~~~~~l~~a~~~i~~~~g~~~~~~l~~~-~~~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 329 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCcCcceecccc-cccCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5677999999999999999999999874 345789999999999999977899999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
++.+..|+|||+|++.++.+++++|++++++.+.++.+.+++++.++.+++.+.+++|||||++.+.+..++++.+++.+
T Consensus 408 a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~ 487 (2050)
T 3cmu_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred HhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccch
Confidence 98888999999999999988999999999999999999999999999888888999999999999986455544444433
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
...+++++++.|+.|...++++||+||++||+++.++. .|++| ++|+||++|+|+||+|++|+|..+|+++++..+.+
T Consensus 488 ~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~-~~g~p-~~psGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~ 565 (2050)
T 3cmu_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 565 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTC-CSSCC-EECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccc-ccCCC-cCCCCcchhhhhCCEEEEEEecccccCCccccCcE
Confidence 44577889999999999999999999999999999886 45555 78999999999999999999999887766656777
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
++++++|||++||++.+.|+|.|+.|+.++.++++++.+.+++.++|+||.|.++++ ||++.+..||++||+++++|..
T Consensus 566 ~~v~V~KnR~gp~g~~~~f~I~~~~Gi~~~~~~ldla~~~~ii~k~g~w~~~~~~~l~qg~e~~~~~l~~~p~~~~ei~~ 645 (2050)
T 3cmu_A 566 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 645 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEecCCCCCCceEEEEEEeCCCccccccchhhhhhcChhhhcCceecccCCchHhhHHHHHHHHHhChHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhccC
Q 014268 383 KLREKLVVD 391 (427)
Q Consensus 383 ~i~~~~~~~ 391 (427)
++++.+...
T Consensus 646 ~i~~~~~Vt 654 (2050)
T 3cmu_A 646 KVRELLLSN 654 (2050)
T ss_dssp HHHHHHCSS
T ss_pred HHHHhcccc
Confidence 999998755
No 8
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=2e-46 Score=428.71 Aligned_cols=326 Identities=57% Similarity=0.907 Sum_probs=294.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 64 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++..+|..++.+|++.|++++++.+++. ......++|||++.||.+|++|||++|++++|+|+||+||||||++++.++
T Consensus 329 ~~~~~l~~a~~~i~~~fg~~~~~~l~~~-~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 329 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999874 335689999999999999977899999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchh
Q 014268 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (427)
Q Consensus 144 ~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~ 223 (427)
++.+.+|+|||+|++.++.+++.+|++++++.+.++.+.+++++.++.+++..++++|||||++.+.+..++++.+++.+
T Consensus 408 ~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~ 487 (1706)
T 3cmw_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCC
T ss_pred HHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccc
Confidence 99899999999999999989999999999999999999999999999888888999999999999986444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccce
Q 014268 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 303 (427)
Q Consensus 224 ~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~ 303 (427)
.+.+++++++.++.|...++++|||||++||+++.++. +|+.| ++|.||.+|+|+||+|++|+|.++|+++++..+.+
T Consensus 488 ~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~-~fg~~-~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~ 565 (1706)
T 3cmw_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 565 (1706)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTC-CSSCC-EEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccc-ccCCC-ccCCCCcceeeeCCEEEEEEeccccccCccccCcE
Confidence 34567889999999999999999999999999999887 46555 78999999999999999999999887766555677
Q ss_pred EEEEEeecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCCccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 014268 304 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 382 (427)
Q Consensus 304 ~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~el~~ 382 (427)
+.++|+|||++|+++.+.|.|.|+.|+++..++++++.+.+++.++|+||.|.++++ ||++.+..||++||.+.++|+.
T Consensus 566 ~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~~~~~d~a~~~~~i~k~g~w~~y~~~~i~~g~~~~~~~l~~~p~l~~~i~~ 645 (1706)
T 3cmw_A 566 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 645 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCeEEEEEecCCCccccccHHHhhhhcCceeccccEEeeCCceecccHHHHHHHHhhCHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhccCC
Q 014268 383 KLREKLVVDH 392 (427)
Q Consensus 383 ~i~~~~~~~~ 392 (427)
++++++++.+
T Consensus 646 ~~~~~~~~~p 655 (1706)
T 3cmw_A 646 KVRELLLSNP 655 (1706)
T ss_dssp HHHHHHCSSC
T ss_pred HHHHHhccCC
Confidence 9999998663
No 9
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=100.00 E-value=2.1e-45 Score=355.84 Aligned_cols=282 Identities=25% Similarity=0.413 Sum_probs=216.3
Q ss_pred CCCccccCchhhHHhhc---CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCCHHHHHHhccc
Q 014268 96 HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVK 170 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~---~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~~~~~~~ig~~ 170 (427)
.+.++|||++.||.+|| +||+++| +++|+|+||+||||||++++.++++. ++.|+|||+|.++++.+++++|++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD 81 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence 46789999999999998 5899999 99999999999999999999999876 788999999999999999999999
Q ss_pred cCccccCCCCCHHHH-HHHHHHH--HhcCCccEEEEecccccCCCCccCCcccchhHH--HHHHHHHHHHHHHHHHhhcC
Q 014268 171 TENLLLAQPDCGEQA-LSLVDTL--IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLS 245 (427)
Q Consensus 171 ~~~l~~~~~~~~~~~-~~~~~~l--~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~--~~ar~ls~~L~~L~~~l~~~ 245 (427)
++++.+.++.+.+++ ++.+..+ ++...+++|||||++.+.+..++++.+++.+.+ .++|.+++.|++|.+.++++
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 8877776 677889999999999999777888877765544 68899999999999999999
Q ss_pred CcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEE
Q 014268 246 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELE 325 (427)
Q Consensus 246 ~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~ 325 (427)
|++||++||++. ++. +|++|. +.||+++ |+|.+|+.++|...++++++..|+++.+++.|+|..++....+|.|.
T Consensus 162 ~i~vi~tNQV~k-~G~-~fg~p~--~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~ 236 (333)
T 3io5_A 162 NIPCIAINHTYE-TQE-MFSKTV--MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVK 236 (333)
T ss_dssp TCEEEEEEEC-------------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECSSBCTTCEEEEEBC
T ss_pred CCEEEEECCeee-cCc-ccCCCC--CCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEEEccCCcCCcEEEE
Confidence 999999999988 776 788874 4899999 99999999999998999888899999999999999999888899999
Q ss_pred eCCCCCchhhHHHHHHhcCCccc-cceeEEec--C----------cccccH-----HHHHHHHhhCHHHHHHHHHHH
Q 014268 326 FGKGISRESEIIDLALKHKFASK-AGAMFTYN--D----------RNFRGK-----EAFKQFLVENESVREELVIKL 384 (427)
Q Consensus 326 ~~~Gi~~~~~~~~~~~~~~~i~~-~g~~~~~~--~----------~~~~~~-----~~~~~~l~~~~~~~~el~~~i 384 (427)
|+.||++..+++++|.++|+|.| +|+||+|. + ++.+.+ +.|.. |-+|+++.+.|+.+.
T Consensus 237 ~~~Gi~~~~~lld~a~~~gii~k~~g~wy~~~~~~~~~G~~~~~ek~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~ 312 (333)
T 3io5_A 237 FDGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTFWGP-LFKHQPFRDAIKRAY 312 (333)
T ss_dssp TTSCBCTTTTHHHHHHHHTSEECSSTTEEEEEEEETTTTEEEECSCCEEGGGGSSHHHHHH-HHTCHHHHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHhCCeEEcCCCceEEeccCCccccccHHHHHHHHhhcCchHHHHHH-HhcCchHHHHHHHhh
Confidence 99999999999999999999998 99999994 2 222322 33333 456787888876553
No 10
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=100.00 E-value=2.3e-37 Score=317.57 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=210.8
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccchhhhH--hhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQI--CNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||++++++|+|+.. +.++...++..+..++ ++.++..-..+... +....+..+.+++.++++.|++.
T Consensus 103 a~~v~e~~~~R~li~~------~~~i~~~~~~~~~~~~~~l~~a~~~l~~i~~~---~~~~~~~~~~~~~~~~~~~i~~~ 173 (444)
T 3bgw_A 103 CQTVSEYFQKRKAISI------AQQIIENVNESDDGPVKPIQEAVSELMEIEAS---GTDDDDGSIDEALVTVYEEIESA 173 (444)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHC------CCTHHHHHHHHHHHHSC---CCSSCCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhh---cccCCCccHHHHHHHHHHHHHHh
Confidence 7899999999999997 5555555554433333 33333222222222 12234666677999999999865
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
++ ...++|||+++||.++| ||++|++++|+|+||+||||||++++.+++..+.+|+||++||+.
T Consensus 174 ~~--------------~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 174 DG--------------NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp CS--------------SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred hc--------------CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 42 47899999999999997 999999999999999999999999999998888899999999998
Q ss_pred CHHHHH----HhccccC---------------------------ccccCC--CCCHHHHHHHHHHHHhcCCcc--EEEEe
Q 014268 160 DPSLAE----TIGVKTE---------------------------NLLLAQ--PDCGEQALSLVDTLIRSGSVD--VVVVD 204 (427)
Q Consensus 160 ~~~~~~----~ig~~~~---------------------------~l~~~~--~~~~~~~~~~~~~l~~~~~~~--lvvID 204 (427)
.+...+ ..+++.+ ++++.+ ..+..++...++++...++++ +||||
T Consensus 238 ~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID 317 (444)
T 3bgw_A 238 KENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMID 317 (444)
T ss_dssp THHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 854332 3344311 222222 247888888899888888899 99999
Q ss_pred cccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeee
Q 014268 205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKF 279 (427)
Q Consensus 205 sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~ 279 (427)
|++.+..... . . .+..+++..++.|+..++++|||||+++|+++..+. +++++|. ++.+|+|
T Consensus 318 ~Lq~~~~~~~--~----~---~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~----r~~krp~lsdlr~Sg~ieq 384 (444)
T 3bgw_A 318 YLQLLEPAKA--N----D---SRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQ----RQDKRPMLSDLRESGQLEQ 384 (444)
T ss_dssp CSTTSBCSCS--S----S---CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGG----SSCCCCCGGGCCSCSHHHH
T ss_pred cHHhccCCCC--C----C---CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc----cCCCCCchhhhhhhhhHHh
Confidence 9999874211 0 1 122344455555555566679999999999998765 3333342 2337999
Q ss_pred ecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 280 YASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 280 ~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
+||+|++|+|.++|.++.+..+ .++++|.|||+||+ +++.+.|.....+|.++
T Consensus 385 ~aD~Vi~L~r~~~~~~~~~~~~-~~~l~i~K~R~G~~---g~v~l~f~~~~~rf~~~ 437 (444)
T 3bgw_A 385 DADIIEFLYRDDYYDKESESKN-IVEVIIAKHRDGPV---GTVSLAFIKEYGNFVNL 437 (444)
T ss_dssp HCSEEEECCBGGGTCTTCSSTT-EEEEEEEEESSSCC---EEEEEEEETTTTEEECC
T ss_pred hCCEEEEEeccccccccccCCC-eEEEEEEcccCCCC---eEEEEEEEcCccEEecC
Confidence 9999999999998865433334 45899999999988 57889999998888653
No 11
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=100.00 E-value=4.3e-37 Score=316.23 Aligned_cols=299 Identities=17% Similarity=0.194 Sum_probs=209.5
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccc--hhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLE--TSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||++++++|+|+.. +.++...++.+ +..++++.++..-..+... .....+..+.+++.++++.|++.
T Consensus 103 a~iv~e~~~~R~li~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 173 (444)
T 2q6t_A 103 ARIVAEKWTLRRLIQA------AGEAMRLAYEEAGSLDEILDTAGKKILEVALT---KTDTEARPMRELVHETFEHIEAL 173 (444)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHC---SCCCSSEEHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhccccCHHHHHHHHHHHHHHHHhh---ccCCCCccHHHHHHHHHHHHHHH
Confidence 6899999999999997 55555544432 3344444443332222221 12245677788999999999866
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~ 158 (427)
+.. ...+.++|||++.||.++| ||++|++++|+|+||+||||||++++.+++. .+.+|+||++||+
T Consensus 174 ~~~-----------~~~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 174 FQN-----------KGEVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp --------------------CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred HhC-----------CCCCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 542 2357899999999999997 9999999999999999999999999999986 4778999999998
Q ss_pred CCHH----HHHHhccccCcc-------------------------ccCCC--CCHHHHHHHHHHHHhcCCccEEEEeccc
Q 014268 159 LDPS----LAETIGVKTENL-------------------------LLAQP--DCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (427)
Q Consensus 159 ~~~~----~~~~ig~~~~~l-------------------------~~~~~--~~~~~~~~~~~~l~~~~~~~lvvIDsl~ 207 (427)
..+. ++...+++++++ ++.+. .+..++...++++...+++++|||||++
T Consensus 241 ~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~ 320 (444)
T 2q6t_A 241 AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQ 320 (444)
T ss_dssp HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence 7643 233445554332 22222 3688888888888888889999999999
Q ss_pred ccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecc
Q 014268 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYAS 282 (427)
Q Consensus 208 ~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad 282 (427)
.+.... .+. . ...+.+++...++.|+..+++++||||+++|+++..+. +++++|. ++.+|+|+||
T Consensus 321 ~~~~~~--~~~-~---~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~----r~~~~p~l~dlr~Sg~ie~~aD 390 (444)
T 2q6t_A 321 LMSGPG--SGK-S---GENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA----RPNKRPMLSDLRESGSIEQDAD 390 (444)
T ss_dssp GCBCC-------------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS----SSSCSCCGGGGGGGCTTGGGCS
T ss_pred hcCCCc--CCC-C---CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc----CCCCCCChHHhcchhHHHHhCC
Confidence 997420 000 0 01223445555566666666679999999999998765 3334443 2337999999
Q ss_pred eEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 283 VRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 283 ~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
++++|+|.++|.++++..+ .++++|.|+|+||+ +.+.+.|...+.+|.++
T Consensus 391 ~vi~L~r~~~~~~~~~~~~-~~~l~i~K~R~g~~---g~~~l~f~~~~~~f~~~ 440 (444)
T 2q6t_A 391 LVMFIYRDEYYNPHSEKAG-IAEIIVGKQRNGPT---GTVELQFHASHVRFNDL 440 (444)
T ss_dssp EEEEEEEGGGTCSSSSCCS-EEEEEEEECSSSCC---EEEEEEEETTTTEEECC
T ss_pred EEEEEecccccCCcCCCCC-eEEEEEEecCCCCc---eEEEEEEECCccEEecC
Confidence 9999999988864432233 45999999999988 57899999998888664
No 12
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=100.00 E-value=7.6e-36 Score=307.76 Aligned_cols=297 Identities=14% Similarity=0.182 Sum_probs=210.2
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccc--hhhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLE--TSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 79 (427)
|+||++++++|+|+.. +.++...++.. +..++++.++.....+... .....+..+.+++..+++.+++.
T Consensus 106 a~iv~e~~~~R~li~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 176 (454)
T 2r6a_A 106 ARIVEEKSVLRRLIRT------ATSIAQDGYTREDEIDVLLDEADRKIMEVSQR---KHSGAFKNIKDILVQTYDNIEML 176 (454)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHSCCSCSHHHHHHHHHHHHHHHTT---SCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhccccCHHHHHHHHHHHHHHHHhc---cccccCccHHHHHHHHHHHHHHH
Confidence 6899999999999997 55555555542 3344444444333332222 22345677778999999999987
Q ss_pred cCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCC
Q 014268 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~ 158 (427)
+.. ...+.++|||++.||.+++ ||++|++++|+|+||+|||||+++++.+++.. +.+|+||++|++
T Consensus 177 ~~~-----------~~~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 177 HNR-----------DGEITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp HSC-----------CCCCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred HhC-----------CCCCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 652 2457899999999999997 99999999999999999999999999999864 668999999998
Q ss_pred CCHHH----HHHhccccCc-------------------------cccCCC--CCHHHHHHHHHHHHhcCCccEEEEeccc
Q 014268 159 LDPSL----AETIGVKTEN-------------------------LLLAQP--DCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (427)
Q Consensus 159 ~~~~~----~~~ig~~~~~-------------------------l~~~~~--~~~~~~~~~~~~l~~~~~~~lvvIDsl~ 207 (427)
..+.. +...|+++++ +++..+ .+..++...++.++...++++|||||++
T Consensus 244 ~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 244 AQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGG
T ss_pred HHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHH
Confidence 76432 3334554322 222222 3788888888888877889999999999
Q ss_pred ccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecc
Q 014268 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYAS 282 (427)
Q Consensus 208 ~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad 282 (427)
.+.... ... . .+.+.+...++.|+..++++|+|||+++|+++..+. +++++|. ++..++|+||
T Consensus 324 ~~~~~~-~~~---~----~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~----~~~~~p~lsdlr~Sg~ie~~aD 391 (454)
T 2r6a_A 324 LIQGSG-RSK---E----NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQ----RQDKRPMMSDIRESGSIEQDAD 391 (454)
T ss_dssp GSCCSC-C-----------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTT----C---CCCTHHHHTTCSHHHHCS
T ss_pred HhccCC-CCC---C----CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc----CCCCCCcHHHhhccchhHhhCC
Confidence 987421 110 0 112334444445555555579999999999998765 3334443 2348999999
Q ss_pred eEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhhH
Q 014268 283 VRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 283 ~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
.+++|+|+++|.++++..+ .+++++.|||+||+ +.+.+.|..++.+|.++
T Consensus 392 ~vi~l~r~~~~~~~~~~~~-~~~l~i~K~R~G~~---g~v~l~f~~~~~~f~~~ 441 (454)
T 2r6a_A 392 IVAFLYRDDYYNKDSENKN-IIEIIIAKQRNGPV---GTVQLAFIKEYNKFVNL 441 (454)
T ss_dssp EEEEEEETTC-------CC-EEEEEEEEESSSCC---EEEEEEEETTTTEEECC
T ss_pred EEEEEecccccCcccCCCC-eEEEEEecccCCCC---eEEEEEEEcCccEEeCC
Confidence 9999999988864432223 45899999999988 57889999999888764
No 13
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=100.00 E-value=7.4e-36 Score=294.87 Aligned_cols=243 Identities=16% Similarity=0.164 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 65 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+.+++..+++.|++.+.. ....+.++|||++.||.+++ ||++|++++|+|+||+|||||+++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~----------~~~~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 4 IKEVLESAMDLITENQRK----------GSLEVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH----------TTTCCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----------CCCCcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 556899999999988751 12368999999999999997 999999999999999999999999999999
Q ss_pred hcCceEEEEeCCCCCCHHHHH----HhccccC-------------------------ccccCCC--CCHHHHHHHHHHHH
Q 014268 145 RQGGYCVFIDAEHALDPSLAE----TIGVKTE-------------------------NLLLAQP--DCGEQALSLVDTLI 193 (427)
Q Consensus 145 ~~~~~vv~is~E~~~~~~~~~----~ig~~~~-------------------------~l~~~~~--~~~~~~~~~~~~l~ 193 (427)
..+.+|+||++||+..+...+ ..+++.+ ++++.+. .++.++...++++.
T Consensus 72 ~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~ 151 (338)
T 4a1f_A 72 NDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK 151 (338)
T ss_dssp HTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH
Confidence 888999999999987743322 2233321 2333322 36888889999888
Q ss_pred hcC-CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc
Q 014268 194 RSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 272 (427)
Q Consensus 194 ~~~-~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~ 272 (427)
..+ ++++|||||++.|..... ...+..+++..++.|+..+++++||||+++|+++.++. +++++|.
T Consensus 152 ~~~gg~~lIVIDyLqlm~~~~~---------~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~----r~dkrP~ 218 (338)
T 4a1f_A 152 SQHKELGIAFIDYLQLMSGSKA---------TKERHEQIAEISRELKTLARELEIPIIALVQLNRSLEN----RDDKRPI 218 (338)
T ss_dssp HHCTTEEEEEEEEEECCCTHHH---------HHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGG----SSSCSCC
T ss_pred HhcCCCCEEEEechHHhcCCCC---------CCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccc----cccCCCC
Confidence 777 899999999999974110 01122234444455555555579999999999999876 3444442
Q ss_pred -----CCceeeeecceEEEEEecccccc------------Cc-c---c------------------ccceEEEEEeecCC
Q 014268 273 -----GGNALKFYASVRLNIKRIGLVKK------------GE-E---T------------------IGSQIAVKIVKNKL 313 (427)
Q Consensus 273 -----gG~~ie~~ad~vi~L~r~~~~~~------------~~-~---~------------------~g~~~~l~i~K~R~ 313 (427)
++.+|+|+||+|++|||++||.+ +. + . .+ ..+++|+|||+
T Consensus 219 lsDLreSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~eiiiaK~R~ 297 (338)
T 4a1f_A 219 LSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIE-EAEIIVAKNRN 297 (338)
T ss_dssp GGGSEETTEECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEE-EEEEEEEEETT
T ss_pred hHhcccchhhhhhCcEEEEEecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCC-ceEEEEEeccC
Confidence 23489999999999999999875 22 1 1 23 45999999999
Q ss_pred CCCCCeeEEEEEeCCCCCchhhH
Q 014268 314 APPFKTAQFELEFGKGISRESEI 336 (427)
Q Consensus 314 g~~~~~~~~~i~~~~Gi~~~~~~ 336 (427)
||+ +++.+.|...+.+|.++
T Consensus 298 G~~---g~v~l~f~~~~~~F~~~ 317 (338)
T 4a1f_A 298 GAT---GTVYTRFNAPFTRYEDM 317 (338)
T ss_dssp SCC---EEEEEEEEGGGTEECCC
T ss_pred CCC---ceEEEEEccccceeccc
Confidence 999 68999999999988764
No 14
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=100.00 E-value=3.2e-33 Score=274.91 Aligned_cols=243 Identities=18% Similarity=0.179 Sum_probs=182.4
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHH
Q 014268 60 ENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 60 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~i 139 (427)
..+..+.+++.++++.|++. . ....++|||++.||.++| ||++|++++|+|+||+||||||+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~i~TG~~~LD~~lg--Gl~~G~l~li~G~pG~GKTtl~l~i 88 (315)
T 3bh0_A 25 DDDGSIDEALVTVYEEIESA-D-------------GNITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQ 88 (315)
T ss_dssp -CCCCCHHHHHHHHHHHHTC-S-------------SSCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSSHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhc-c-------------CCCCCccCChHHHHhhcC--CCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 44666777999999999864 1 247899999999999997 9999999999999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCCCCHHHHH----HhccccC---------------------------ccccCCC--CCHHHHH
Q 014268 140 IAEAQRQGGYCVFIDAEHALDPSLAE----TIGVKTE---------------------------NLLLAQP--DCGEQAL 186 (427)
Q Consensus 140 a~~~~~~~~~vv~is~E~~~~~~~~~----~ig~~~~---------------------------~l~~~~~--~~~~~~~ 186 (427)
+.+++..+.+|+||++|++..+...+ ..+++.. ++++... .+..++.
T Consensus 89 a~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~ 168 (315)
T 3bh0_A 89 AKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIW 168 (315)
T ss_dssp HHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHH
T ss_pred HHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 99998888899999999987643222 2233311 2233332 4688888
Q ss_pred HHHHHHHhcCCcc--EEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccccccc
Q 014268 187 SLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGF 264 (427)
Q Consensus 187 ~~~~~l~~~~~~~--lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~ 264 (427)
..++.+...++++ +|||||++.+... . . . . .+...+...++.|+..++++|||||+++|+++..+.
T Consensus 169 ~~i~~l~~~~~~~~~lVVID~l~~l~~~-~-~---~-~---~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~--- 236 (315)
T 3bh0_A 169 SKTRQTKRKNPGKRVIVMIDYLQLLEPA-K-A---N-D---SRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQ--- 236 (315)
T ss_dssp HHHHHHHHTSSSCCEEEEEECGGGSBCS-C-T---T-S---CHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTT---
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhcCCC-C-C---C-C---CHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccc---
Confidence 8888888888899 9999999999741 1 1 0 1 122344455556666666689999999999998765
Q ss_pred CCCeeec-----cCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCchhh
Q 014268 265 GGPTEVT-----CGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 335 (427)
Q Consensus 265 ~~~~~~~-----~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~~~~ 335 (427)
+++++| .+...|+|+||++++|+|.++|.++.+..+ .++++|.|||+|++ +.+.+.|.....+|.+
T Consensus 237 -r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~-~~~l~v~K~R~G~~---g~~~l~f~~~~~~f~~ 307 (315)
T 3bh0_A 237 -RQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKN-IVEVIIAKHRDGPV---GTVSLAFIKEYGNFVN 307 (315)
T ss_dssp -SSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHCTTCTTTT-EEEEEEEEETTSCC---EEEEEEEEGGGTEEEE
T ss_pred -CCCCCCCHHHhhhhhhhHhhCCEEEEEecccccCccccCCC-cEEEEEECCcCCCC---ceEEEEEECCCCeEec
Confidence 222333 233489999999999999988765433333 45899999999988 5788888888877765
No 15
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.97 E-value=3.2e-30 Score=254.51 Aligned_cols=246 Identities=25% Similarity=0.398 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 65 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
..+++..+...+++.|..+..+... .....++|||++.||.+|+ ||+++|++++|+|+||+|||+||++++..++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 58 AQKIIKEARDALDIRFKTALEVKKE----RMNVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp --------------CCCCHHHHHHH----HCSCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccCccchhhhhhh----hccCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 4446666666677666665544321 2357899999999999998 8999999999999999999999999999987
Q ss_pred hc------CceEEEEeCCCCCCHH----HHHHhccccC----ccccCCCCCHHH---HHHHHHHHHhc-CCccEEEEecc
Q 014268 145 RQ------GGYCVFIDAEHALDPS----LAETIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSV 206 (427)
Q Consensus 145 ~~------~~~vv~is~E~~~~~~----~~~~ig~~~~----~l~~~~~~~~~~---~~~~~~~l~~~-~~~~lvvIDsl 206 (427)
.+ +++|+||++|++++.. +++++|++++ ++.+.++.+.++ ++..+..++.. .++++|||||+
T Consensus 133 ~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 133 LPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp SCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred cccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 65 6789999999987632 5667788763 566777777664 44555666666 78999999999
Q ss_pred cccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEE
Q 014268 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLN 286 (427)
Q Consensus 207 ~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~ 286 (427)
+.+.. .++.+. ++ ...+.+.+.+.++.|...+++++++||++||+++.++. .|+++ .+|.+|+.|+|++|+|++
T Consensus 213 ~~l~~-~~~~~~-g~--~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~-~~~~~-~~~~gg~~l~~~~d~~l~ 286 (324)
T 2z43_A 213 TSHFR-AEYPGR-EN--LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM-FYGDP-TVAVGGHTLYHVPGIRIQ 286 (324)
T ss_dssp THHHH-HHSCTT-TS--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--------------------------CEEEE
T ss_pred HHHhh-hhhcCc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCC-cCCCC-CCCCchHHHHhhCcEEEE
Confidence 99873 333221 11 12333456777888888888889999999999988764 34444 678899999999999999
Q ss_pred EEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCc
Q 014268 287 IKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 332 (427)
Q Consensus 287 L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~ 332 (427)
|+|.. +..+.+++.|||++|.+ ...|.|. +.|+..
T Consensus 287 l~r~~---------~~~r~~~v~k~~~~p~~-~~~f~I~-~~Gi~~ 321 (324)
T 2z43_A 287 LKKSR---------GNRRIARVVDAPHLPEG-EVVFALT-EEGIRD 321 (324)
T ss_dssp EEECS---------TTEEEEEEEECSSSCCE-EEEEEEE-TTEEEC
T ss_pred EEEcC---------CCeEEEEEEECCCCCce-EEEEEEe-CCCccc
Confidence 99863 22458999999999664 4689998 778753
No 16
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.97 E-value=2.2e-30 Score=257.66 Aligned_cols=247 Identities=26% Similarity=0.391 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 65 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
..+++..+...+++.|.++..+... .....++|||++.||.+|+ |||++|++++|+|+||+||||||++++.+++
T Consensus 73 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 73 VDKIKEAANKLIEPGFLTAFEYSEK----RKMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp -------------CCSEEHHHHHHH----GGGCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccCCCcHHHHHhh----hcccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3345666665555555444433211 1247899999999999998 8999999999999999999999999999876
Q ss_pred h------cCceEEEEeCCCCCCHH----HHHHhcccc----CccccCCCCCHHHH---HHHHHHHHhc--CCccEEEEec
Q 014268 145 R------QGGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQA---LSLVDTLIRS--GSVDVVVVDS 205 (427)
Q Consensus 145 ~------~~~~vv~is~E~~~~~~----~~~~ig~~~----~~l~~~~~~~~~~~---~~~~~~l~~~--~~~~lvvIDs 205 (427)
. .+++++||++|++++.. ++.++|+++ +++.+.++.+.+++ +..+..++.. .++++|||||
T Consensus 148 ~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDs 227 (343)
T 1v5w_A 148 LPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDS 227 (343)
T ss_dssp SCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEET
T ss_pred cccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEec
Confidence 5 36789999999987643 566778776 46666666555544 4445566666 7899999999
Q ss_pred ccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccccc-cc-CCCeeeccCCceeeeecce
Q 014268 206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF-GF-GGPTEVTCGGNALKFYASV 283 (427)
Q Consensus 206 l~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~-~~-~~~~~~~~gG~~ie~~ad~ 283 (427)
++.+.. .++.+. ++ ...+++.+.+.++.|.+.++++|++||++||+++.++.. +| +++ .+|+||+.|+|++|+
T Consensus 228 l~~l~~-~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~-~~~~gg~~i~~~ad~ 302 (343)
T 1v5w_A 228 IMALFR-VDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADP-KKPIGGHILAHASTT 302 (343)
T ss_dssp SGGGHH-HHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------CCTTTTSSSE
T ss_pred hHHHHH-HHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCC-CcCCchHHHHHhCCE
Confidence 999873 333321 11 123344567778888888888999999999999987642 24 233 688999999999999
Q ss_pred EEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCCc
Q 014268 284 RLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 332 (427)
Q Consensus 284 vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~~ 332 (427)
|++|+|.. +..+.++|.|||++|.+ .+.|.|. +.|+..
T Consensus 303 ~l~l~r~~---------~~~r~~~v~K~r~~p~~-~~~f~I~-~~Gi~~ 340 (343)
T 1v5w_A 303 RISLRKGR---------GELRIAKIYDSPEMPEN-EATFAIT-AGGIGD 340 (343)
T ss_dssp EEEEEESS---------TTEEEEEEEECTTCCSS-CEEEEEE-TTEEEE
T ss_pred EEEEEEcC---------CCEEEEEEEECCCCCCe-eEEEEEe-CCCccC
Confidence 99999863 12458999999999665 4689998 778753
No 17
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.97 E-value=4.5e-30 Score=252.95 Aligned_cols=247 Identities=27% Similarity=0.379 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceeecCCCCCCCCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 63 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 63 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
.+..++++.+...++..|..+..+... .....++|||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+
T Consensus 47 ~~a~~~i~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 47 KAAAKMIMGARDLCDLGFKSGIDLLKQ----RSTVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHHHHHHHHTTCSCCCTHHHHHH----HTTCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCcHHHHHHH----hccCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345567777777777667666554321 2357899999999999998 89999999999999999999999999998
Q ss_pred hhh------------cC----ceEEEEeCCCCCCHH----HHHHhcccc----CccccCCCCCHHH---HHHHHHHHHhc
Q 014268 143 AQR------------QG----GYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS 195 (427)
Q Consensus 143 ~~~------------~~----~~vv~is~E~~~~~~----~~~~ig~~~----~~l~~~~~~~~~~---~~~~~~~l~~~ 195 (427)
++. .+ ++|+||++|++++.. +++++|+++ +++.+.++.+.++ ++..+..++..
T Consensus 122 ~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 201 (322)
T 2i1q_A 122 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQE 201 (322)
T ss_dssp TTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHT
T ss_pred HhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 642 23 789999999987533 566778876 4666777777765 44455666666
Q ss_pred -CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCC
Q 014268 196 -GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGG 274 (427)
Q Consensus 196 -~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG 274 (427)
.++++|||||++.+.. ..+.+. ++ ...+.+.+.+.++.|...+++++++||++||+++.++. .|+++ .+|.+|
T Consensus 202 ~~~~~lvVIDsl~~l~~-~~~~~~-~~--~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~-~~g~~-~~~~g~ 275 (322)
T 2i1q_A 202 GNNIKLVVIDSLTSTFR-NEYTGR-GK--LAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDA-FFGMA-EQAIGG 275 (322)
T ss_dssp TCEEEEEEEECSSHHHH-HHCCCT-TS--HHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC--------C-CEESSH
T ss_pred ccCccEEEEECcHHHHH-HHhcCC-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCC-CCCCC-cCCCCc
Confidence 7899999999999873 333221 11 12334567778888888888899999999999988665 35444 588999
Q ss_pred ceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeCCCCC
Q 014268 275 NALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 331 (427)
Q Consensus 275 ~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~ 331 (427)
+.|+|++|+|++|+|.. + ..+.+++.|||++|.+ ...|.|. +.|+.
T Consensus 276 ~~~~~~~d~~i~l~~~~----~-----~~r~~~v~k~~~~p~~-~~~f~I~-~~Gi~ 321 (322)
T 2i1q_A 276 HIVGHAATFRFFVRKGK----G-----DKRVAKLYDSPHLPDA-EAIFRIT-EKGIQ 321 (322)
T ss_dssp HHHHHHCSEEEEEEECS----T-----TEEEEEEEECSSSCCE-EEEEEEE-TTEEE
T ss_pred HHHHhcCcEEEEEEecC----C-----CeEEEEEEECCCCCCe-EEEEEEe-CCCcC
Confidence 99999999999999864 1 2348999999999765 3588988 77763
No 18
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.95 E-value=1.7e-27 Score=240.55 Aligned_cols=222 Identities=26% Similarity=0.455 Sum_probs=156.2
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh------cCceEEEEeCCCCCCH----HHHH
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~------~~~~vv~is~E~~~~~----~~~~ 165 (427)
...+++||++.||.+|+ |||++|++++|+|+||+||||||++++...+. .+++++||++|+.+.. .+++
T Consensus 156 ~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~ 234 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 234 (400)
T ss_dssp TSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence 57899999999999998 99999999999999999999999999877764 2467999999998763 3567
Q ss_pred HhccccC----ccccCCCCCHHHHH---HHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHH
Q 014268 166 TIGVKTE----NLLLAQPDCGEQAL---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (427)
Q Consensus 166 ~ig~~~~----~l~~~~~~~~~~~~---~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L 238 (427)
++|++++ ++.+..+.+.+... ..+..++...++++++||+++.+.+ .++++. +. ...+++.+...++.|
T Consensus 235 ~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g~--l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 235 RFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-GE--LSARQMHLAKFMRAL 310 (400)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CC--HHHHHHHHHHHHHHH
T ss_pred HcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-cc--hHHHHHHHHHHHHHH
Confidence 7888765 56666666655443 3344455567899999999999884 444431 21 234445556666666
Q ss_pred HHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 317 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~ 317 (427)
.+.++++|+|||+++|+++..+.. .|+.+...|.+|..|+|.+|.|++|++.. + ..+.+++.|+|++|++
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~----g-----~~R~l~v~K~R~~p~~ 381 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK----G-----CQRLCKVVDSPCLPEA 381 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS----T-----TEEEEEEEECSSSCSC
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC----C-----CcEEEEEEcCCCCCCC
Confidence 666677899999999997665431 23333467889999999999999999863 1 1358999999999988
Q ss_pred CeeEEEEEeCCCCCch
Q 014268 318 KTAQFELEFGKGISRE 333 (427)
Q Consensus 318 ~~~~~~i~~~~Gi~~~ 333 (427)
. +.|.|. +.|+...
T Consensus 382 e-~~F~It-~~Gi~~~ 395 (400)
T 3lda_A 382 E-CVFAIY-EDGVGDP 395 (400)
T ss_dssp E-EEEEEE-TTEEECC
T ss_pred c-eEEEEe-CCccccc
Confidence 6 899998 8888643
No 19
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.95 E-value=4.1e-27 Score=220.96 Aligned_cols=221 Identities=24% Similarity=0.399 Sum_probs=146.7
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh------cCceEEEEeCCCCCCH----HHHH
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~------~~~~vv~is~E~~~~~----~~~~ 165 (427)
++.+++||++.||.+|+ ||+++|++++|+|+||+|||||+++++..++. .+.+++||++++.+.. .+++
T Consensus 2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 46789999999999998 89999999999999999999999999987543 2678999999997553 2556
Q ss_pred Hhcccc----CccccCCCCCHHHHHHH---HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHH
Q 014268 166 TIGVKT----ENLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (427)
Q Consensus 166 ~ig~~~----~~l~~~~~~~~~~~~~~---~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L 238 (427)
.+++++ +++.+..+.+..+.... +..++...++++++||+++.+.. ..+++. ++ ...+++.+...+..|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~-~~--~~~r~~~~~~~~~~l 156 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR-GE--LSARQMHLARFLRML 156 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------C--HHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC-cc--HHHHHHHHHHHHHHH
Confidence 678876 56666666666654433 44555667899999999998873 223221 11 122233455566666
Q ss_pred HHHhhcCCcEEEEEecCCcccccc-ccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCC
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 317 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~-~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~ 317 (427)
...++++|+|||+++|.++..+.. .+.+...+|++|..|++.||.+++|++.. +..+.+.+.|+|++|.+
T Consensus 157 ~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~---------~~~r~l~v~K~r~~~~~ 227 (243)
T 1n0w_A 157 LRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLPEA 227 (243)
T ss_dssp HHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS---------TTEEEEEECCBTTBSCE
T ss_pred HHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC---------CCeEEEEEEECCCCCCC
Confidence 666667899999999998876531 12122356788889999999999999752 12458999999999865
Q ss_pred CeeEEEEEeCCCCCc
Q 014268 318 KTAQFELEFGKGISR 332 (427)
Q Consensus 318 ~~~~~~i~~~~Gi~~ 332 (427)
. ..|.|. +.|+..
T Consensus 228 ~-~~f~I~-~~Gi~~ 240 (243)
T 1n0w_A 228 E-AMFAIN-ADGVGD 240 (243)
T ss_dssp E-EEEEEE-TTEEEC
T ss_pred e-EEEEEe-CCcccc
Confidence 4 788888 888764
No 20
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.95 E-value=4e-27 Score=221.73 Aligned_cols=210 Identities=20% Similarity=0.216 Sum_probs=148.0
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCCCCHHHH--HHhcccc
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLA--ETIGVKT 171 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~~~~~~~--~~ig~~~ 171 (427)
.++++||||++.||.+|+ |||++|++++|+|+||+|||+||++++.+.+. .+.+++|+++|++.++... ...+.+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~ 85 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF 85 (251)
T ss_dssp -CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred CCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCCh
Confidence 478999999999999998 89999999999999999999999999988654 5778999999998764332 2233321
Q ss_pred C------cc------------------ccCCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHH
Q 014268 172 E------NL------------------LLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 227 (427)
Q Consensus 172 ~------~l------------------~~~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ 227 (427)
+ ++ ........+.++..+..++...++++++||+++.+.... . ..
T Consensus 86 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~--~----~~----- 154 (251)
T 2zts_A 86 EKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--E----EE----- 154 (251)
T ss_dssp HHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--S----SG-----
T ss_pred HHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc--c----Ch-----
Confidence 1 11 111223456677777777888899999999999876211 1 11
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEE
Q 014268 228 ARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVK 307 (427)
Q Consensus 228 ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~ 307 (427)
+.+...++.|...++++||+|++++|+.+.... ...+...++++||.+++|++.+... ...+.+.
T Consensus 155 -~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~--------~~~~~~~~~~~aD~vi~l~~~~~~~------~~~R~l~ 219 (251)
T 2zts_A 155 -RKIREVLLKLNTILLEMGVTTILTTEAPDPQHG--------KLSRYGIEEFIARGVIVLDLQEKNI------ELKRYVL 219 (251)
T ss_dssp -GGHHHHHHHHHHHHHHHCCEEEEEECCC----C--------CSSSSSCGGGGCSEEEEEEEEECSS------SEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHcCCCeEEEEEEeccccc--------ccccCCceeEEeeEEEEEEEEecCC------eEEEEEE
Confidence 112234555666666689999999998764322 1122237899999999998864221 2345799
Q ss_pred EeecCCCCCC-CeeEEEEEeCCCCCc
Q 014268 308 IVKNKLAPPF-KTAQFELEFGKGISR 332 (427)
Q Consensus 308 i~K~R~g~~~-~~~~~~i~~~~Gi~~ 332 (427)
|.|+|.+|.. ....|+|. ++|+..
T Consensus 220 I~K~R~~~~~~~~~~f~It-~~Gi~v 244 (251)
T 2zts_A 220 IRKMRETRHSMKKYPFEIG-PNGIVV 244 (251)
T ss_dssp EEEETTCCCCCBEEEEEEE-TTEEEE
T ss_pred EEEcCCCCCCCEEEEEEEe-CCcEEE
Confidence 9999998854 46689998 788764
No 21
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.94 E-value=2.4e-26 Score=239.69 Aligned_cols=221 Identities=12% Similarity=0.120 Sum_probs=160.7
Q ss_pred CCCcccc-CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCHH----HHHHhcc
Q 014268 96 HVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPS----LAETIGV 169 (427)
Q Consensus 96 ~~~~l~T-G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~~----~~~~ig~ 169 (427)
...++|| |++.||.+|| |+++|++++|+|+||+||||||++++.+++.. +.+|+||++|++..+. ++...++
T Consensus 220 ~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~ 297 (503)
T 1q57_A 220 ESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV 297 (503)
T ss_dssp CTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTS
T ss_pred ccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCC
Confidence 5789999 9999999997 99999999999999999999999999999876 8899999999987643 2333455
Q ss_pred ccC--------------------------ccccCCC---CCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCccc
Q 014268 170 KTE--------------------------NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG 220 (427)
Q Consensus 170 ~~~--------------------------~l~~~~~---~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g 220 (427)
++. ++.+.+. .+.++++..++.++...++++|||||++.+... . . +
T Consensus 298 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~---~ 372 (503)
T 1q57_A 298 RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-G---E 372 (503)
T ss_dssp CCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-S---C
T ss_pred ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-C---C
Confidence 432 2333332 568888888888888889999999999998732 1 1 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeec-----cCCceeeeecceEEEEEecccccc
Q 014268 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVT-----CGGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 221 ~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~-----~gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
. .+.+.+...++.|...++++|||||+++|+++ .+...-.....+| .++..|+|+||.||+|+|.++..
T Consensus 373 ~----~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~- 446 (503)
T 1q57_A 373 S----DERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGD- 446 (503)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSS-
T ss_pred C----CHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCC-
Confidence 1 12234445556666666668999999999998 3320000011222 23458999999999999976321
Q ss_pred CcccccceEEEEEeecC-CCCCCCeeEE-EEEeCCCCCchhhH
Q 014268 296 GEETIGSQIAVKIVKNK-LAPPFKTAQF-ELEFGKGISRESEI 336 (427)
Q Consensus 296 ~~~~~g~~~~l~i~K~R-~g~~~~~~~~-~i~~~~Gi~~~~~~ 336 (427)
..+ .++++|.||| +|++ +.+ .+.|.....+|.++
T Consensus 447 ---~~~-~~~l~v~K~R~~G~~---g~~~~l~f~~~~~~f~~~ 482 (503)
T 1q57_A 447 ---MPN-LVLVRILKCRFTGDT---GIAGYMEYNKETGWLEPS 482 (503)
T ss_dssp ---CTT-EEEEEEEEETTTCCC---EEEEEEEECTTTCCEEEE
T ss_pred ---CCC-eEEEEEEeccCCCCC---CceEEEEEEcCCceEecC
Confidence 123 4589999999 6887 455 78888887777553
No 22
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.3e-25 Score=210.96 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=148.4
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCc--
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN-- 173 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~-- 173 (427)
.+++||++.||.+|+ ||+++|++++|+|+||+||||||++++.++++.+++++|+++|++..+. .+..+|+++++
T Consensus 3 ~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 3 RRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred ccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 579999999999998 8999999999999999999999999999998888999999999876532 33445665432
Q ss_pred ----ccc-------------------CCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHH
Q 014268 174 ----LLL-------------------AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 230 (427)
Q Consensus 174 ----l~~-------------------~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ 230 (427)
+.+ ..+.+..++...+..++...++++++||+++.+... + .. ..+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~----~---~~----~~~- 149 (247)
T 2dr3_A 82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN----K---PA----MAR- 149 (247)
T ss_dssp HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT----C---GG----GHH-
T ss_pred hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC----C---HH----HHH-
Confidence 111 113456667777777777778999999999998621 1 11 112
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEee
Q 014268 231 MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVK 310 (427)
Q Consensus 231 ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K 310 (427)
+.+..|.+.+++.|+|||+++|.++.... . . +..++++||.+++|++.... + ...+.+.|.|
T Consensus 150 --~~l~~l~~~~~~~~~~vi~~~h~~~~~~~--~----~----~~~~~~~~D~vi~L~~~~~~--~----~~~r~l~v~K 211 (247)
T 2dr3_A 150 --SIILQLKRVLAGTGCTSIFVSQVSVGERG--F----G----GPGVEHGVDGIIRLDLDEID--G----ELKRSLIVWK 211 (247)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECC----C--C----C-----CCHHHHSSEEEEEEEEEET--T----EEEEEEEEEE
T ss_pred --HHHHHHHHHHHHCCCeEEEEecCCCCccc--c----c----ccccceeEEEEEEEEEEccC--C----eeEEEEEEEE
Confidence 23445555566689999999999875211 1 1 12589999999999987532 1 1356899999
Q ss_pred cCCCCCC-CeeEEEEEeCCCCCc
Q 014268 311 NKLAPPF-KTAQFELEFGKGISR 332 (427)
Q Consensus 311 ~R~g~~~-~~~~~~i~~~~Gi~~ 332 (427)
+|.+++. ....|.|. +.|+..
T Consensus 212 ~R~~~~~~~~~~f~i~-~~Gi~~ 233 (247)
T 2dr3_A 212 MRGTSHSMRRHPFDIT-DKGIIV 233 (247)
T ss_dssp ETTSCCCCBCEEEEEE-TTEEEE
T ss_pred CCCCCCCCceEEEEEc-CCCEEE
Confidence 9999876 67789998 778764
No 23
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.93 E-value=1.3e-25 Score=207.61 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=149.9
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH----HHHHhcccc---
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS----LAETIGVKT--- 171 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~----~~~~ig~~~--- 171 (427)
+++||++.||.+++ ||+++|++++|+|+||+|||||+++++. ..+.+++|++.++..... +....++++
T Consensus 1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 47999999999998 8999999999999999999999999988 567899999999854422 223344432
Q ss_pred -CccccCCCCCH---HHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCc
Q 014268 172 -ENLLLAQPDCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 247 (427)
Q Consensus 172 -~~l~~~~~~~~---~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~ 247 (427)
+++.+..+... .+.+..++.++.. ++++++||+++.+..... . .. ...+.+...++.|...++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~-~---~~----~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE-N---RS----GLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG-G---SS----TTHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC-c---hH----HHHHHHHHHHHHHHHHHHHcCC
Confidence 23344444333 3345555566544 699999999998863211 0 01 1123444555555555566799
Q ss_pred EEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCCCCeeEEEEEeC
Q 014268 248 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFG 327 (427)
Q Consensus 248 tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~~~~~~~~i~~~ 327 (427)
+||+++|.++..+. ...+|.++..|++.||.+++|++.. . +..+.+.+.|+|.++++....|.|. +
T Consensus 148 ~vi~~~h~~~~~~~-----~~~~p~~~~~~~~~~d~vi~l~~~~---~-----~~~r~l~v~K~r~~~~~~~~~f~I~-~ 213 (220)
T 2cvh_A 148 PVIVINQVHFDSRT-----EMTKPVAEQTLGYRCKDILRLDKLP---K-----PGLRVAVLERHRFRPEGLMAYFRIT-E 213 (220)
T ss_dssp CEEEEECSSSSCTT-----SSCCSCCCHHHHHTSSEEEEEEECS---S-----TTEEEEEEEECSSSCTTCEEEEEEE-T
T ss_pred EEEEEeeEEEcCCC-----CccccCCCcceeecCcEEEEEEEec---C-----CCEEEEEEEeCCCCCCCceEEEEEe-C
Confidence 99999999886542 2357788889999999999999864 1 1245899999999999887899998 8
Q ss_pred CCCC
Q 014268 328 KGIS 331 (427)
Q Consensus 328 ~Gi~ 331 (427)
.|+.
T Consensus 214 ~Gi~ 217 (220)
T 2cvh_A 214 RGIE 217 (220)
T ss_dssp TEEE
T ss_pred Ccee
Confidence 8875
No 24
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.93 E-value=1e-25 Score=224.34 Aligned_cols=218 Identities=27% Similarity=0.434 Sum_probs=151.4
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCHH----HHH
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAE 165 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~~----~~~ 165 (427)
.+.++|||++.||.+|+ ||+++|++++|+|+||+|||||+++++..++.+ ++.|+||+++..+.+. ++.
T Consensus 109 ~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q 187 (349)
T 1pzn_A 109 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 187 (349)
T ss_dssp TCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 47899999999999999 999999999999999999999999999887532 3568999999876432 344
Q ss_pred Hhcccc----CccccCCCCC---HHHHHHHHHHHHhc-----CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH
Q 014268 166 TIGVKT----ENLLLAQPDC---GEQALSLVDTLIRS-----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (427)
Q Consensus 166 ~ig~~~----~~l~~~~~~~---~~~~~~~~~~l~~~-----~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~ 233 (427)
..++++ +++.+..... ..+.+..++.++.. .+++++|||+++.+.. ....++ + ....+++.+.+
T Consensus 188 ~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld-~~~~~~-~--~~~~r~~~~~~ 263 (349)
T 1pzn_A 188 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGR-G--ALAERQQKLAK 263 (349)
T ss_dssp TTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH-HHCCST-T--THHHHHHHHHH
T ss_pred HcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh-hhhccc-c--cHHHHHHHHHH
Confidence 445443 3444544333 23455566666665 6899999999998862 222221 1 12233344556
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCC
Q 014268 234 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 313 (427)
Q Consensus 234 ~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~ 313 (427)
.++.|.+.++++|+|||++||+...++. .++++ ..|.+|+.|+|.++.++++++.. +..+.+++.|+|+
T Consensus 264 ~l~~L~~la~~~~~tvii~~h~~~~~~~-~~~~~-~~~~~G~~l~~~~~~rL~l~~~~---------~~~Ri~k~~ks~~ 332 (349)
T 1pzn_A 264 HLADLHRLANLYDIAVFVTNQVQARPDA-FFGDP-TRPIGGHILAHSATLRVYLRKGK---------GGKRIARLIDAPH 332 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTCSEEEEEEECT---------TSEEEEEESCSSS
T ss_pred HHHHHHHHHHHcCcEEEEEccccccccc-ccCCc-cccCCcceEeecCcEEEEEEEcC---------CCeEEEEEEeCCC
Confidence 6777777777789999999999887654 34444 67889999999999999998753 1244789999999
Q ss_pred CCCCCeeEEEEEeCCCCC
Q 014268 314 APPFKTAQFELEFGKGIS 331 (427)
Q Consensus 314 g~~~~~~~~~i~~~~Gi~ 331 (427)
+|.+. +.|.|. +.|+.
T Consensus 333 ~~~~~-~~f~It-~~Gi~ 348 (349)
T 1pzn_A 333 LPEGE-AVFSIT-EKGIE 348 (349)
T ss_dssp SCCSE-EEEEEE-TTEEE
T ss_pred CCCeE-EEEEEc-CCCCC
Confidence 88764 789998 77763
No 25
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.91 E-value=2.4e-23 Score=193.49 Aligned_cols=206 Identities=26% Similarity=0.447 Sum_probs=137.8
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh------cCceEEEEeCCCCCCH----HHHH
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~------~~~~vv~is~E~~~~~----~~~~ 165 (427)
.+++++||++.||.+|+ ||+++|++++|+||||||||||+..++..+.. .+++++|++.+..... .+.+
T Consensus 3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998 89999999999999999999998887776554 2567999999986552 3344
Q ss_pred HhccccC----ccccCCCCCHHH---HHHHHHHHHh-----cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH
Q 014268 166 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (427)
Q Consensus 166 ~ig~~~~----~l~~~~~~~~~~---~~~~~~~l~~-----~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~ 233 (427)
.+++.++ ++.+.......+ ....+..++. ..+++++++|++..... ..+++. + ....+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~-~--~~~~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGR-G--ALAERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCST-T--HHHHHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCC-c--chhHHHHHHHH
Confidence 5565543 554444433322 2233344444 67899999999988752 233321 1 11222333444
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCC
Q 014268 234 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 313 (427)
Q Consensus 234 ~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~ 313 (427)
.+..|.+.+++.|+|||+++|..+. +|..+++.||.+++|+++. ...+.+.+.|+|+
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~--------------~g~~~~~~~d~~l~l~~~~---------~~~r~l~~~K~r~ 214 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN--------------GGHILAHSATLRVYLRKGK---------GGKRIARLIDAPH 214 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC-----------------------CCSEEEEEEECT---------TSCEEEEEESCC-
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC--------------cchhhHhhceEEEEEEecC---------CCeEEEEEEeCCC
Confidence 5555555556679999999998764 3457999999999998742 1234799999999
Q ss_pred CCCCCeeEEEEEeCCCCC
Q 014268 314 APPFKTAQFELEFGKGIS 331 (427)
Q Consensus 314 g~~~~~~~~~i~~~~Gi~ 331 (427)
+|++.. .|.|. +.|+.
T Consensus 215 ~~~~~~-~f~i~-~~Gl~ 230 (231)
T 4a74_A 215 LPEGEA-VFSIT-EKGIE 230 (231)
T ss_dssp -CCSCE-EEEEE-TTEEE
T ss_pred CCCceE-EEEEe-ccccc
Confidence 998875 89998 77763
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.88 E-value=8.3e-22 Score=182.99 Aligned_cols=203 Identities=21% Similarity=0.259 Sum_probs=141.7
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCccc
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTENLL 175 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~l~ 175 (427)
.+++||++.||.+++ ||+++|++++|+|+||+|||||+.+++..+...++.++|++.++..... ....++++++.+.
T Consensus 3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 478999999999997 8999999999999999999999999998888778899999998764432 2334565544321
Q ss_pred ------------------cCCCCCHHHHHHHHHHHHhcCCcc--EEEEecccccCCCCccCCcccchhHHHHHHHHHHHH
Q 014268 176 ------------------LAQPDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 235 (427)
Q Consensus 176 ------------------~~~~~~~~~~~~~~~~l~~~~~~~--lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L 235 (427)
.....+..++...+...+...+++ ++++|+++.+.... +. ..+.+...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d-----~~------~~~~~~~~l 150 (235)
T 2w0m_A 82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK-----PA------MARKISYYL 150 (235)
T ss_dssp TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC-----GG------GHHHHHHHH
T ss_pred hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC-----HH------HHHHHHHHH
Confidence 011225666666666666666789 99999999876211 11 123344445
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCC
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 315 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~ 315 (427)
+.++ ++.|++||+++|..+. +. +... ..++++||.++.|++.... + ...+.+.|.|+|.++
T Consensus 151 ~~~~---~~~~~~vi~~~h~~~~-~~----~~~~-----~~~~~~~d~vi~l~~~~~~--~----~~~r~l~v~K~r~~~ 211 (235)
T 2w0m_A 151 KRVL---NKWNFTIYATSQYAIT-TS----QAFG-----FGVEHVADGIIRFRRMIRN--G----ELHRYILIEKMRQTD 211 (235)
T ss_dssp HHHH---HHTTEEEEEEEC---------------------CHHHHCSEEEEEEEEEET--T----EEEEEEEEEEETTCC
T ss_pred HHHH---HhCCCeEEEEeccCcc-cc----cccc-----cchheeeeEEEEEEEEecC--C----cEEEEEEEEeccCCc
Confidence 5444 4579999999998852 11 1100 2689999999999987521 1 134589999999987
Q ss_pred CC-CeeEEEEEeCC-CCCc
Q 014268 316 PF-KTAQFELEFGK-GISR 332 (427)
Q Consensus 316 ~~-~~~~~~i~~~~-Gi~~ 332 (427)
.. ....|+|. +. |+..
T Consensus 212 ~~~~~~~f~i~-~~~Gi~~ 229 (235)
T 2w0m_A 212 HDKHVWEIDIV-NGKGIVL 229 (235)
T ss_dssp CCCSCEEEEEE-TTTEEEE
T ss_pred ccceeEEEEEc-CCCCeEE
Confidence 65 57889998 66 8754
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.88 E-value=1e-21 Score=190.75 Aligned_cols=219 Identities=13% Similarity=0.139 Sum_probs=134.8
Q ss_pred CCCcccc-CchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCHHHHHHh----cc
Q 014268 96 HVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETI----GV 169 (427)
Q Consensus 96 ~~~~l~T-G~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~~~~~~i----g~ 169 (427)
...+++| |++.||.+++ |+++|++++|+|+||+|||||+++++..+... |..++|++.|++..+...+.+ ++
T Consensus 13 ~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 13 ESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV 90 (296)
T ss_dssp CCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC
Confidence 5789999 9999999997 99999999999999999999999999888765 458999999986432211111 11
Q ss_pred cc--------------------------CccccCC---CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCccc
Q 014268 170 KT--------------------------ENLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG 220 (427)
Q Consensus 170 ~~--------------------------~~l~~~~---~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g 220 (427)
.+ ..+.+.. ..+..++...+..+....++++++||+++.+.... ..
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~--~~--- 165 (296)
T 1cr0_A 91 RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS--GE--- 165 (296)
T ss_dssp CGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-------------
T ss_pred ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC--CC---
Confidence 11 1122222 24677777666655556789999999999986310 00
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc-----CCceeeeecceEEEEEecccccc
Q 014268 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC-----GGNALKFYASVRLNIKRIGLVKK 295 (427)
Q Consensus 221 ~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~-----gG~~ie~~ad~vi~L~r~~~~~~ 295 (427)
.......+.+...|+.+++ ++|+|||+++|.++..+.. -.++.++|. ++..++++||.+++|+++..+..
T Consensus 166 -~d~~~~~~~i~~~L~~la~---~~~~~vi~vsh~~r~~~~~-~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~~~ 240 (296)
T 1cr0_A 166 -SDERKMIDNLMTKLKGFAK---STGVVLVVICHLKNPDKGK-AHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDM 240 (296)
T ss_dssp ----CHHHHHHHHHHHHHHH---HHCCEEEEEEECC------------------CCC---CHHHHCSEEEEEEEC-----
T ss_pred -CCHHHHHHHHHHHHHHHHH---HhCCeEEEEEecCcccccc-ccccCCCCCHHHhcccHHhHhhCcEEEEEecCcccCC
Confidence 0000223445555555554 4699999999997521100 001122332 23379999999999999864311
Q ss_pred CcccccceEEEEEeecC-CCCCCCeeEE-EEEeCCCCCchh
Q 014268 296 GEETIGSQIAVKIVKNK-LAPPFKTAQF-ELEFGKGISRES 334 (427)
Q Consensus 296 ~~~~~g~~~~l~i~K~R-~g~~~~~~~~-~i~~~~Gi~~~~ 334 (427)
.+ .+.+++.|+| +|+.+ .+ .+.|.....+|.
T Consensus 241 ----~~-~~~l~i~K~R~~g~~g---~~~~~~f~~~~~~f~ 273 (296)
T 1cr0_A 241 ----PN-LVLVRILKCRFTGDTG---IAGYMEYNKETGWLE 273 (296)
T ss_dssp -------CEEEEEEEETTTCCCE---EEEEEEECTTTCCEE
T ss_pred ----CC-eEEEEEEccccCCCCC---ceEEEEEEcCccEEe
Confidence 12 4589999999 58874 43 666665555544
No 28
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.84 E-value=1.1e-20 Score=181.93 Aligned_cols=216 Identities=15% Similarity=0.240 Sum_probs=129.7
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----------CceEEEEeCCCCCCHH--HH
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------GGYCVFIDAEHALDPS--LA 164 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~----------~~~vv~is~E~~~~~~--~~ 164 (427)
...++||++.||.+++ |+++|++++|+|+||+|||||+++++..+... ++.++|++.|+..... .+
T Consensus 10 ~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp HHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred HHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 5679999999999997 99999999999999999999999999877642 4679999999876532 33
Q ss_pred HHhcccc---------CccccCCC-------CCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHH
Q 014268 165 ETIGVKT---------ENLLLAQP-------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQA 228 (427)
Q Consensus 165 ~~ig~~~---------~~l~~~~~-------~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~a 228 (427)
..++.+. +++.+.+. .+..+ +..+..++. ++++||||+++.+.+... ...
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~-----~~~------ 153 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEE-----NAS------ 153 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCT-----TCH------
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCc-----Cch------
Confidence 3455432 23322221 12222 445555543 589999999999864211 111
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCe--eeccCCceeeeecceEEEEEecccc--c---cCccccc
Q 014268 229 RLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT--EVTCGGNALKFYASVRLNIKRIGLV--K---KGEETIG 301 (427)
Q Consensus 229 r~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~--~~~~gG~~ie~~ad~vi~L~r~~~~--~---~~~~~~g 301 (427)
+.+...++.|...+++.|+|||+++|.++.... ++.+. ....|+.++...+.....+.+...- . -+++..+
T Consensus 154 ~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~--~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~ 231 (279)
T 1nlf_A 154 GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAM--MGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRR 231 (279)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC----------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGG
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc--cCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcC
Confidence 123334445555555579999999999876431 22221 1234444665433333334333210 0 0122335
Q ss_pred ceEEEEEeecCCCCCCCeeEEEEEeCCCCC
Q 014268 302 SQIAVKIVKNKLAPPFKTAQFELEFGKGIS 331 (427)
Q Consensus 302 ~~~~l~i~K~R~g~~~~~~~~~i~~~~Gi~ 331 (427)
..+++++.|||++|++....|++. +.|+-
T Consensus 232 ~~~~~~v~K~~~~~~~~~~~~~~~-~~G~l 260 (279)
T 1nlf_A 232 FFVRFGVSKANYGAPFADRWFRRH-DGGVL 260 (279)
T ss_dssp GEEEEEEEECSSSSCCCCEEEEEC-GGGCE
T ss_pred cEEEeeeccccCCCCCCceEEEEc-CCeeE
Confidence 566899999999999987666665 55643
No 29
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.84 E-value=3.1e-20 Score=174.62 Aligned_cols=209 Identities=19% Similarity=0.195 Sum_probs=139.4
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCCCCCCH--HHHHHhccccC
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDP--SLAETIGVKTE 172 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E~~~~~--~~~~~ig~~~~ 172 (427)
.+.+++||++.||.+++ ||+++|++++|.||||||||||+..++.... .++.+++|++.+..... ...+.+|+.++
T Consensus 8 ~~~~i~tg~~~lD~~l~-Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 86 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE 86 (251)
T ss_dssp CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred ccceeecCCHhHHHHhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChH
Confidence 57899999999999998 8999999999999999999999877776554 67888999998876542 23455676654
Q ss_pred cc------cc------------------CCCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHH
Q 014268 173 NL------LL------------------AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQA 228 (427)
Q Consensus 173 ~l------~~------------------~~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~a 228 (427)
+. .+ ..+....++...+...+...+++++++|++....... .+ + . ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~--~d-~--~---~~- 157 (251)
T 2ehv_A 87 KYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EE-E--R---KI- 157 (251)
T ss_dssp HHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SS-G--G---GH-
T ss_pred HHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc--CC-H--H---HH-
Confidence 32 11 1112234445555555566789999999998775211 00 0 0 11
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeec-ceEEEEEeccccccCcccccceEEEE
Q 014268 229 RLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYA-SVRLNIKRIGLVKKGEETIGSQIAVK 307 (427)
Q Consensus 229 r~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~a-d~vi~L~r~~~~~~~~~~~g~~~~l~ 307 (427)
+ ..+..+.+.+++.|+|||+++|..+.... ... +..+++.| |.+++|.+... .+ ...+.+.
T Consensus 158 ~---~~l~~l~~~l~~~g~tii~vtH~~~~~~~-~~~--------~~~i~~~~aD~vi~l~~~~~--~~----~~~r~l~ 219 (251)
T 2ehv_A 158 R---EVLLKLNTILLEMGVTTILTTEAPDPQHG-KLS--------RYGIEEFIARGVIVLDLQEK--NI----ELKRYVL 219 (251)
T ss_dssp H---HHHHHHHHHHHHHCCEEEEEECCC----C-CSS--------SSSCGGGGCSEEEEEEEEEC--SS----SEEEEEE
T ss_pred H---HHHHHHHHHHHHCCCeEEEEECCCCCCcc-ccc--------ccChhhEeeeEEEEEeeecc--CC----eeEEEEE
Confidence 1 22344444445569999999998876421 011 12467788 99999986531 11 2345889
Q ss_pred EeecCCCCCC-CeeEEEEEeCCCCCch
Q 014268 308 IVKNKLAPPF-KTAQFELEFGKGISRE 333 (427)
Q Consensus 308 i~K~R~g~~~-~~~~~~i~~~~Gi~~~ 333 (427)
+.|+|.++.. ....|+|. +.|+..+
T Consensus 220 i~K~r~~~~~~~~~~~~i~-~~Gi~v~ 245 (251)
T 2ehv_A 220 IRKMRETRHSMKKYPFEIG-PNGIVVY 245 (251)
T ss_dssp EEEETTCCCCCBEEEEEEE-TTEEEEC
T ss_pred EEEccCCCcCCceEEEEEC-CCCeEEc
Confidence 9999988764 56788998 7887643
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=3.4e-18 Score=179.05 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=149.6
Q ss_pred CCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH--HHHHhccccCc
Q 014268 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN 173 (427)
Q Consensus 96 ~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~--~~~~ig~~~~~ 173 (427)
.+.+++||++.||.+|+ ||+++|++++|+|+||+|||||+++++......+..++|++.+++..+. .+..+|++.+.
T Consensus 259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~ 337 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337 (525)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence 56789999999999998 8999999999999999999999999888777667778999998765422 22334544221
Q ss_pred ------cccCC----CCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 014268 174 ------LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243 (427)
Q Consensus 174 ------l~~~~----~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~ 243 (427)
+.+.. ..+..+....+.......+++++++|+++.+... .. + .+ ....+..|.+.++
T Consensus 338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~---~-----~~---~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--VS---N-----NA---FRQFVIGVTGYAK 404 (525)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SC---H-----HH---HHHHHHHHHHHHH
T ss_pred HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CC---h-----HH---HHHHHHHHHHHHH
Confidence 11111 1355565555555455678999999988888642 11 1 11 2234555555566
Q ss_pred cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCcccccceEEEEEeecCCCCC-CCeeEE
Q 014268 244 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQF 322 (427)
Q Consensus 244 ~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R~g~~-~~~~~~ 322 (427)
+.|+|||+++|.....+. ++.| +..+++.||.++.|+..+.. + ...+.+.+.|+|.++. .....|
T Consensus 405 ~~g~tvilvsh~~~~~~~--~~~~------~~~l~~~~D~vi~L~~ge~~--~----~~~R~l~v~K~R~~~~~~~~~~f 470 (525)
T 1tf7_A 405 QEEITGLFTNTSDQFMGA--HSIT------DSHISTITDTIILLQYVEIR--G----EMSRAINVFKMRGSWHDKAIREF 470 (525)
T ss_dssp HTTCEEEEEEECSSSSCC--CSSC------SSCCTTTCSEEEEEEEEEET--T----EEEEEEEEEEESSSCCCCBCEEE
T ss_pred hCCCEEEEEECcccccCc--cccc------CcccceeeeEEEEEEEEEeC--C----EEEEEEEEEECCCCCCCCCEEEE
Confidence 679999999998754332 2221 13688999999999876521 1 2356899999999998 578899
Q ss_pred EEEeCCCCCchhhHH
Q 014268 323 ELEFGKGISRESEII 337 (427)
Q Consensus 323 ~i~~~~Gi~~~~~~~ 337 (427)
+|. +.|+. +.+++
T Consensus 471 ~i~-~~Gi~-v~~~~ 483 (525)
T 1tf7_A 471 MIS-DKGPD-IKDSF 483 (525)
T ss_dssp EEC-SSCEE-EEEEC
T ss_pred EEc-CCCEE-Eeccc
Confidence 998 89987 44443
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.62 E-value=4e-15 Score=141.32 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=65.2
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH--HHHHHhccccC
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE 172 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~--~~~~~ig~~~~ 172 (427)
.++||++.||.+|+ ||+++|.++.|.|.||+|||+|+++++.+.+..|.+++||+.+.+... ..++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 47999999999999 999999999999999999999999999999989999999999988774 34556777754
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.60 E-value=2.1e-14 Score=150.17 Aligned_cols=191 Identities=15% Similarity=0.155 Sum_probs=126.2
Q ss_pred CCCCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHH-HHHhhhcCceEEEEeCCCCCC--HHHHHHhcccc
Q 014268 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHV-IAEAQRQGGYCVFIDAEHALD--PSLAETIGVKT 171 (427)
Q Consensus 95 ~~~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~i-a~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~ 171 (427)
..+.+++||++.||.+.. ||+++|++++|.|+||||||||+..+ +.++.+++.+++|++++.... ...++.+|+++
T Consensus 16 ~~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~ 94 (525)
T 1tf7_A 16 QAIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDL 94 (525)
T ss_dssp SSCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCH
T ss_pred cccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCh
Confidence 357889999999999986 79999999999999999999998886 466666688899999987433 23456678876
Q ss_pred Cccc------cCCC------------CCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH
Q 014268 172 ENLL------LAQP------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (427)
Q Consensus 172 ~~l~------~~~~------------~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~ 233 (427)
++.. +... ....+.+......++.++++++++|++..+.+...+ .....+.+..
T Consensus 95 q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~l--------D~~~~~~l~~ 166 (525)
T 1tf7_A 95 AKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA--------SSVVRRELFR 166 (525)
T ss_dssp HHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCC--------HHHHHHHHHH
T ss_pred HHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCC--------HHHHHHHHHH
Confidence 6432 1110 012333333344456678999999999988753111 1122233444
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCce-eeeecceEEEEEeccccccCcccccceEEEEEeecC
Q 014268 234 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNA-LKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 312 (427)
Q Consensus 234 ~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~-ie~~ad~vi~L~r~~~~~~~~~~~g~~~~l~i~K~R 312 (427)
.++.|. +.|+|||+++|....+.. . .... .++.||.++.|+.... .+. ..+.+.+.|.|
T Consensus 167 ll~~l~----~~g~tvl~itH~~~~~~~-------~---~~~~i~~~laD~vi~L~~~~~--~G~----~~r~l~~~k~r 226 (525)
T 1tf7_A 167 LVARLK----QIGATTVMTTERIEEYGP-------I---ARYGVEEFVSDNVVILRNVLE--GER----RRRTLEILKLR 226 (525)
T ss_dssp HHHHHH----HHTCEEEEEEECSSSSSC-------S---STTSCHHHHCSEEEEEEEECS--TTC----CEEEEEEEEET
T ss_pred HHHHHH----HCCCEEEEEecCCCCccc-------c---ccccceeeeeeEEEEEEEEcc--CCc----eeEEEEEEECC
Confidence 444443 459999999998765321 0 0012 3566999999987542 121 23366777877
Q ss_pred CC
Q 014268 313 LA 314 (427)
Q Consensus 313 ~g 314 (427)
..
T Consensus 227 ~~ 228 (525)
T 1tf7_A 227 GT 228 (525)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.45 E-value=6e-14 Score=136.47 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=91.2
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccC
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA 177 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~ 177 (427)
..++||++.||.+|| |+++|.+++|+|+||+|||+||++++.. .+.+++|++.+.... +. ..
T Consensus 104 ~~i~TGi~~LD~lLG--Gi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~--------v~-----~~ 165 (331)
T 2vhj_A 104 GELVGCSPVVAEFGG--HRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP--------LS-----GY 165 (331)
T ss_dssp TTCCSBCCEEEEETT--EEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS--------ST-----TC
T ss_pred hccccCcHHHHHHhC--CCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh--------hh-----hh
Confidence 357899999999995 9999999999999999999999999876 466789999832111 00 01
Q ss_pred CCCCHHHHHHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 014268 178 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (427)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql 255 (427)
. ...++++..+...+...+ ++|||+++.+.+...-.+.+| ...+.+.+.+..|...+++.++++|++++.
T Consensus 166 ~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G-----~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 166 N-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG-----GISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp B-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred h-cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc-----hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 1 345666665555555444 999999999864322111111 223456677888887777889999998764
No 34
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.33 E-value=1e-12 Score=130.50 Aligned_cols=160 Identities=16% Similarity=0.220 Sum_probs=103.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---H---HHHHHhccccCccccCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~---~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
-+++|++++|.|||||||||| ++++.++.++..+.++++++.... . .+.+.+|+.+|+..+....++.+.+..
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTL-lr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence 377999999999999999999 888899988888899998875433 1 234568999998877777777766544
Q ss_pred HHHHHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ~~~l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
...+.. ..-+..+-++...... ..++++ |++|+...||+++.. +..+
T Consensus 129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l 205 (366)
T 3tui_C 129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205 (366)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-TTTSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 221100 0001111122222222 245555 677777777766532 3333
Q ss_pred HHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccccC
Q 014268 239 SHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 296 (427)
Q Consensus 239 ~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~ 296 (427)
.+.+ ++.|+|||+++|.... +..+||.++.|+.+.....+
T Consensus 206 L~~l~~~~g~Tii~vTHdl~~------------------~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 206 LKDINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHHHHSCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEECC
T ss_pred HHHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 3333 4579999999997654 44567888888776655443
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.29 E-value=1.4e-12 Score=130.35 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+|+..++...++.+.+........
T Consensus 26 i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTL-LRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred ECCCCEEEEEcCCCchHHHH-HHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999999 889999988888899998875443 2334668999999887777777766544221100
Q ss_pred ----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 014268 195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 243 (427)
Q Consensus 195 ----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~ 243 (427)
..-+..+-++.+..-. ..++++ |++|+...+|+++.. ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-p~~LSG--GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhHCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 0001111122222222 245665 778888888877653 33333333 4
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.|+|+|+++|....
T Consensus 182 ~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 182 RLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHCCEEEEECSCHHH
T ss_pred hCCCEEEEEECCHHH
Confidence 569999999997654
No 36
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.29 E-value=1.4e-12 Score=129.29 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC----CC-HHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~----~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
-+++|++++|.|||||||||| ++++.++.++..+.++++++.. .. ....+.+|+.+|+..++...++.+.+...
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTL-LRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred EEcCCCEEEEECCCCchHHHH-HHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 367999999999999999999 8899999888888899987653 11 33456799999987777666776655431
Q ss_pred ---------------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 190 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 190 ---------------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
..++. .+-++.+..-. ..++++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~v~~~l~-----~~gL~~~~~r~-~~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 105 LGNGKGRTAQERQRIEAMLE-----LTGISELAGRY-PHELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp STTSSCCSHHHHHHHHHHHH-----HHTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHH-----HcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11111 11122222222 245555 677777777766532
Q ss_pred HH-HHHHHhhcCCcEEEEEecCCcc
Q 014268 235 LR-KLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 235 L~-~L~~~l~~~~~tVI~isql~~~ 258 (427)
++ .|.+..++.|+|||+++|....
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREE 201 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 43 3555556689999999997654
No 37
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.27 E-value=1.1e-11 Score=118.36 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=99.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH---
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~--- 189 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ..+.+.+++.+++..+..+.++.+.+...
T Consensus 34 i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL-LRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH-HHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 67999999999999999999 888888888888889998875433 34566788888876655556666554331
Q ss_pred ----------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHH------H-------------------
Q 014268 190 ----------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ------A------------------- 234 (427)
Q Consensus 190 ----------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~------~------------------- 234 (427)
..++...+ ++.+..-. ...+++ |++|+...++++.. .
T Consensus 113 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTD-----CLALAQRD-YRVLSG--GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp SCSTTHHHHHHHHHHHTT-----CSTTTTSB-GGGCCH--HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred cCcHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 11111111 11111111 234555 77777777777776 2
Q ss_pred -HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccccc
Q 014268 235 -LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 294 (427)
Q Consensus 235 -L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~ 294 (427)
+..+.+.+ ++.++|||+++|.... +..+||.++.|+++....
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl~~------------------~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDLNL------------------AALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 33333333 3457899999996653 455688888888765544
No 38
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.26 E-value=4.2e-12 Score=120.63 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++...++.+.+.....+
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 115 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTT-LRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF 115 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH
Confidence 367999999999999999999 888888888888888888765432 33456789999887666666776665443211
Q ss_pred HhcC------C----ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~~------~----~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
.... . +..+-++...... ...+++ |++|+...+++++.. +..+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 116 YASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp HCCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 0000 0 0011111111111 234444 666666666655432 44444444
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
++.|.|||+++|.... +..+||.+++|..+.
T Consensus 193 ~~~g~tiiivtHd~~~------------------~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 193 SQEGLTILVSSHNMLE------------------VEFLCDRIALIHNGT 223 (256)
T ss_dssp HHTTCEEEEEECCHHH------------------HTTTCSEEEEEETTE
T ss_pred HhCCCEEEEEcCCHHH------------------HHHHCCEEEEEECCE
Confidence 4459999999996553 344678888886543
No 39
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.25 E-value=1.4e-11 Score=115.46 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=97.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HH----HHHHhccccCccccCCCCCHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS----LAETIGVKTENLLLAQPDCGEQALS 187 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~----~~~~ig~~~~~l~~~~~~~~~~~~~ 187 (427)
-+++|++++|.|||||||||| ++++.++.++..+.++++++.... .. ..+.+|+.+++..++...++.+.+.
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~ 105 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTM-LNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE 105 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence 367999999999999999999 888888888888889998865432 11 2345899999887766667766554
Q ss_pred HHHHHHhcC-------------CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 188 LVDTLIRSG-------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 188 ~~~~l~~~~-------------~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
......... -+..+-++....-.+...+++ |++|+...+++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 106 LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG--GQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 321110000 000000111110111245555 777777777776533
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
+..+.+.+ ++.|+|||+++|.... . .+||.++.|+.+..
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~------------------~-~~~d~i~~l~~G~i 223 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINV------------------A-RFGERIIYLKDGEV 223 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHH------------------H-TTSSEEEEEETTEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHH------------------H-HhCCEEEEEECCEE
Confidence 33333433 3459999999996542 2 35888888876553
No 40
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.25 E-value=4.3e-12 Score=121.75 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=93.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC-C----HHHHHHhccccCccc--cCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENLL--LAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~-~----~~~~~~ig~~~~~l~--~~~~~~~~~~~~~ 188 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++... . ..+.+.+|+.+|+.. ++ ..++.+.+..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL-l~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~ 108 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL-FQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVSF 108 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHHH
Confidence 67999999999999999999 88888888888888999887652 1 234567899998752 23 4455554433
Q ss_pred HH---------------HHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH-------------------
Q 014268 189 VD---------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 234 (427)
Q Consensus 189 ~~---------------~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------------- 234 (427)
.. .++...+ ++.+.... ...+++ |++|+...+++++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~-----L~~~~~~~-~~~LSg--GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 109 GAVNMKLPEDEIRKRVDNALKRTG-----IEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcC-----CchhhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 21 1111111 11111111 233444 555555555555432
Q ss_pred -HHHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 -LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 -L~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.++ +.|+|||+++|.... +..+||.++.|..+...
T Consensus 181 ~i~~~l~~l~~~~g~tvi~vtHdl~~------------------~~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 181 EIMKLLVEMQKELGITIIIATHDIDI------------------VPLYCDNVFVMKEGRVI 223 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCCSS------------------GGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEE
Confidence 333333333 349999999997653 45568999888765443
No 41
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.24 E-value=3.8e-12 Score=121.37 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=99.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC------------C----HHHHHHhccccCccccCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQ 178 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~------------~----~~~~~~ig~~~~~l~~~~ 178 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++.... . ..+.+.+|+.+++..++.
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 106 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 106 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Confidence 367999999999999999999 88888888888888888876532 1 134567899999876666
Q ss_pred CCCHHHHHHHHH-HHHh------cCC----ccEEEEecc-cccCCCCccCCcccchhHHHHHHHHHHH------------
Q 014268 179 PDCGEQALSLVD-TLIR------SGS----VDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMSQA------------ 234 (427)
Q Consensus 179 ~~~~~~~~~~~~-~l~~------~~~----~~lvvIDsl-~~l~~~~~~~~~~g~~~~~~~ar~ls~~------------ 234 (427)
..++.+.+.... .+.. ... +..+-++.. .... ...+++ |++|+...+++++..
T Consensus 107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~ 183 (262)
T 1b0u_A 107 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPDVLLFDEPTSA 183 (262)
T ss_dssp TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 667766654421 1000 000 001111121 1111 245555 777777777776643
Q ss_pred --------HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 --------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 --------L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+++.|+|||+++|.... +..+||.+++|..+.
T Consensus 184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH------------------HHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCE
Confidence 444444544459999999996543 445688888887554
No 42
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.24 E-value=4.5e-12 Score=120.88 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=97.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC----C-HHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~----~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++.... . ..+.+.+++.+++..++...++.+.+...
T Consensus 46 ~i~~Gei~~liG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTF-LRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCCcHHHH-HHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 367999999999999999999 88888888888888888876432 1 23456789999887666666776665442
Q ss_pred H-HHHh------cCC----ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 190 D-TLIR------SGS----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 190 ~-~l~~------~~~----~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
. .+.. ... +..+-++..... +...+++ |++|+...++++... +..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSg--GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~ 201 (263)
T 2olj_A 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHA-YPDSLSG--GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201 (263)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-ChhhCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 1000 000 000001111111 1234444 666666666665532 4444
Q ss_pred HHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 239 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 239 ~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.+.+++.|+|||+++|.... +...||.+++|.++..
T Consensus 202 l~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 202 MKQLANEGMTMVVVTHEMGF------------------AREVGDRVLFMDGGYI 237 (263)
T ss_dssp HHHHHHTTCEEEEECSCHHH------------------HHHHCSEEEEEETTEE
T ss_pred HHHHHhCCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEE
Confidence 44444449999999996543 4556888888876543
No 43
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.23 E-value=3.7e-12 Score=126.08 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+|+..++...++.+.+........
T Consensus 23 i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLF-LELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHH-HHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred EcCCCEEEEECCCCccHHHH-HHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999999 888999988888889998865433 3345679999998877777788777655322110
Q ss_pred cCC-------ccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-hcCC
Q 014268 195 SGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLSQ 246 (427)
Q Consensus 195 ~~~-------~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~~~~ 246 (427)
... +..+-++.+.... ...+++ |++|+...+|++... ++.+.+.+ ++.|
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~-~~~LSg--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRN-PLTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSC-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 0011111111111 234554 666666666665432 33333333 4569
Q ss_pred cEEEEEecCCcc
Q 014268 247 TILIFINQVRAK 258 (427)
Q Consensus 247 ~tVI~isql~~~ 258 (427)
+|||++||....
T Consensus 179 ~tii~vTHd~~~ 190 (348)
T 3d31_A 179 LTVLHITHDQTE 190 (348)
T ss_dssp CEEEEEESCHHH
T ss_pred CEEEEEeCCHHH
Confidence 999999997654
No 44
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.22 E-value=1.6e-11 Score=121.98 Aligned_cols=139 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+|+..++...++.+.+.......
T Consensus 26 i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTT-LLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR 104 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred EcCCCEEEEEcCCCchHHHH-HHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 67999999999999999999 888999988888889998865432 223467899999877766667776654321000
Q ss_pred ---hc------CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 014268 194 ---RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 243 (427)
Q Consensus 194 ---~~------~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~ 243 (427)
.. .-+..+-++.+.... ...+++ |++|+...+|++... ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSg--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 105 ISKDEVEKRVVEIARKLLIDNLLDRK-PTQLSG--GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp SHHHHTTHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 00 000111122222222 245555 667777777766532 33333333 3
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.|+|+|+++|....
T Consensus 182 ~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 182 ELGITSVYVTHDQAE 196 (359)
T ss_dssp HHCCEEEEEESCHHH
T ss_pred hcCCEEEEEcCCHHH
Confidence 459999999997654
No 45
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.22 E-value=7.9e-12 Score=124.74 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHH-----
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSL----- 188 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~----- 188 (427)
-+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+|+..++...++.+.+..
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTT-LRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 367999999999999999999 888999988888889998765432 2234678999988766666666665543
Q ss_pred ----------HHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 ----------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ----------~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
+..++.. +-++.+..-. ...+++ |++|+...+|+++.. ++.+
T Consensus 112 ~~~~~~~~~~v~~~l~~-----~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 183 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAEL-----LQIEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 183 (372)
T ss_dssp CCCHHHHHHHHHHHHHH-----TTCGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----cCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 1111111 1122222222 256666 788888888877643 3333
Q ss_pred HHHh-hcCCcEEEEEecCCcc
Q 014268 239 SHSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 239 ~~~l-~~~~~tVI~isql~~~ 258 (427)
.+.+ ++.|+|||+++|....
T Consensus 184 l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 184 IKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHH
Confidence 3333 4459999999997654
No 46
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.21 E-value=6.3e-12 Score=125.04 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=89.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+|+..++...++.+.+........
T Consensus 26 i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTL-LYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK 104 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 67999999999999999999 888999988888889998765432 2234678999998877766777776654221100
Q ss_pred ----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 014268 195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 243 (427)
Q Consensus 195 ----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~ 243 (427)
..-+..+-++.+..-. ...+++ |++|+...+|++... ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 105 APREEIDKKVREVAKMLHIDKLLNRY-PWQLSG--GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 0001111112222222 245555 677777777766542 33333333 3
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.|+|||+++|....
T Consensus 182 ~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 182 ELGITTVYVTHDQAE 196 (362)
T ss_dssp HHTCEEEEEESCHHH
T ss_pred hCCCEEEEECCCHHH
Confidence 459999999997654
No 47
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.20 E-value=1.9e-11 Score=116.10 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=52.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC----HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~----~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++...++.+.+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 103 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENL 103 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHH
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHH
Confidence 367999999999999999999 888888888888888998765432 12345688888876554444555444
No 48
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.20 E-value=5e-12 Score=125.35 Aligned_cols=139 Identities=24% Similarity=0.333 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+++..++...++.+.+........
T Consensus 38 i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~ 116 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTI-LRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR 116 (355)
T ss_dssp EETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 66999999999999999999 888999988888889998765432 2334678999998877777777776654221100
Q ss_pred ------c----CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 014268 195 ------S----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 243 (427)
Q Consensus 195 ------~----~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l-~ 243 (427)
. .-+..+-++.+..-. ...+++ |++|+...+|+++.. ++.+.+.+ +
T Consensus 117 ~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 117 VPKDEMDARVRELLRFMRLESYANRF-PHELSG--GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 001111122222222 245555 677777777766543 33333333 3
Q ss_pred cCCcEEEEEecCCcc
Q 014268 244 LSQTILIFINQVRAK 258 (427)
Q Consensus 244 ~~~~tVI~isql~~~ 258 (427)
+.|+|||+++|....
T Consensus 194 ~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 194 EMGVTSVFVTHDQEE 208 (355)
T ss_dssp HHTCEEEEECSCHHH
T ss_pred hcCCEEEEECCCHHH
Confidence 459999999997654
No 49
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.20 E-value=1.7e-11 Score=114.17 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--H----HH-HHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SL-AETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~----~~-~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+++|++++|.|||||||||| ++++.++.++..+.+++++..... . .+ .+.+++.+++..++...++.+.+..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTL-LYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EETTCEEEEEECTTSCHHHH-HHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 66999999999999999999 888888888888888888765432 1 12 3568999988766666676665543
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.18 E-value=7.1e-12 Score=125.18 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++.... ....+.+|+.+|+..++...++.+.+..
T Consensus 26 i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTT-LRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp EETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHH-HHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 66999999999999999999 888999988888888888764321 1234568999998877777777776654
Q ss_pred HHHHHh----------cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHH
Q 014268 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 238 (427)
Q Consensus 189 ~~~l~~----------~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L 238 (427)
...... ..-+..+-++.+.... ...+++ |++|+...+|+++.. ++.+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 321100 0001111122222222 245665 777777777776643 3333
Q ss_pred HHHh-hcCCcEEEEEecCCcc
Q 014268 239 SHSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 239 ~~~l-~~~~~tVI~isql~~~ 258 (427)
.+.+ ++.|+|||+++|....
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHhcCCEEEEECCCHHH
Confidence 3333 3469999999997654
No 51
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.17 E-value=3.6e-11 Score=114.86 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCcc-ccCCCCCHHHHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTL- 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l-~~~~~~~~~~~~~~~~~l- 192 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++.......+.+.+|+.+++. ......++.+.+......
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTL-LQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence 367999999999999999999 88888888878888888876443223445688888874 233345666655432110
Q ss_pred HhcCC--------ccEEEEe--cccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHHh
Q 014268 193 IRSGS--------VDVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 242 (427)
Q Consensus 193 ~~~~~--------~~lvvID--sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~l 242 (427)
..... +..+-++ .+.... ...+++ |++|+...+++++.. +..+.+.+
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 108 YPDRDPVPLVKKAMEFVGLDFDSFKDRV-PFFLSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp CTTSCSHHHHHHHHHHTTCCHHHHTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcCCcccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 00000 0000011 111111 234454 667777766666532 44444444
Q ss_pred hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 243 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 243 ~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
++.|.|||+++|.... +...||.++.|..+..
T Consensus 185 ~~~g~tii~vtHd~~~------------------~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 185 KTLGKTVILISHDIET------------------VINHVDRVVVLEKGKK 216 (266)
T ss_dssp HHTTCEEEEECSCCTT------------------TGGGCSEEEEEETTEE
T ss_pred HHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 4349999999996543 4456888888876543
No 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.16 E-value=1.1e-11 Score=116.61 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=93.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHH-HHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~-~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
+++|++++|.|||||||||| ++++.++.++..+.+++++..... ..+ .+.+++.+++..++...++.+.+.....
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT-LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 67999999999999999999 888888888888888888765432 222 3348898887766555566655443210
Q ss_pred H-HhcC----C----ccEE-EEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHH
Q 014268 192 L-IRSG----S----VDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 241 (427)
Q Consensus 192 l-~~~~----~----~~lv-vIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~ 241 (427)
. .... . +..+ -++....- +...+++ |++|+...+++++.. +..+.+.
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQ-LGGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTS-BSSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcccHhhHhcC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0 0000 0 0000 01111111 1234444 666666666665432 4444444
Q ss_pred hhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 242 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 242 l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+++.|+|||+++|.... +...||.++.|.++.
T Consensus 185 ~~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~ 216 (240)
T 1ji0_A 185 INQEGTTILLVEQNALG------------------ALKVAHYGYVLETGQ 216 (240)
T ss_dssp HHHTTCCEEEEESCHHH------------------HHHHCSEEEEEETTE
T ss_pred HHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCE
Confidence 44469999999996543 445688888887554
No 53
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.16 E-value=2e-10 Score=108.69 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=93.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh--hhcCceEEEEeCCCCCC---HHHH-HHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD---PSLA-ETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~--~~~~~~vv~is~E~~~~---~~~~-~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++|++++|.|||||||||| ++++.++ .++..+.+++++..... ..+. ..+++.+++..++...++.+.+...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL-GKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 66999999999999999999 7777776 45667788888765432 1222 2367888877666666777665442
Q ss_pred HHHHhcC---------C----ccEEEEe-cccccCCCCc-cCCcccchhHHHHHHHHHHH--------------------
Q 014268 190 DTLIRSG---------S----VDVVVVD-SVAALVPKGE-LDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 190 ~~l~~~~---------~----~~lvvID-sl~~l~~~~~-~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
....... . +..+-++ .+.... ... +++ |++|+...++++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 181 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-LNEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-TTCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHH
Confidence 2110000 0 0000111 111111 234 666 888888888887653
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeee-cceEEEEEecc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIG 291 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~-ad~vi~L~r~~ 291 (427)
+..+.+.+++.+.|||+++|.... +... ||.+++|..+.
T Consensus 182 l~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~~d~v~~l~~G~ 221 (250)
T 2d2e_A 182 VARGVNAMRGPNFGALVITHYQRI------------------LNYIQPDKVHVMMDGR 221 (250)
T ss_dssp HHHHHHHHCSTTCEEEEECSSSGG------------------GGTSCCSEEEEEETTE
T ss_pred HHHHHHHHHhcCCEEEEEecCHHH------------------HHHhcCCEEEEEECCE
Confidence 555555555568999999996543 3334 58888886543
No 54
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.15 E-value=6.9e-12 Score=124.47 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC------CHHHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------DPSLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~------~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++|++++|.|||||||||| ++++.++.++..+.++++++... .....+.+|+.+|+..++...++.+.+...
T Consensus 28 i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTF-MRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHH-HHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 67999999999999999999 88889998888888888875431 122346689998887666666666655431
Q ss_pred ---------------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------
Q 014268 190 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 190 ---------------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
..++.. +-++.+.... ...+++ |++|+...+|+++..
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~-----~~L~~~~~~~-~~~LSG--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~ 178 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKI-----LDIHHVLNHF-PRELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHH-----TTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH-----cCCchHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 111111 1112222212 234555 666666666666532
Q ss_pred HHHHHHHh-hcCCcEEEEEecCCcc
Q 014268 235 LRKLSHSL-SLSQTILIFINQVRAK 258 (427)
Q Consensus 235 L~~L~~~l-~~~~~tVI~isql~~~ 258 (427)
++.+.+.+ ++.|+|||+++|....
T Consensus 179 l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 179 ARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 33333333 3459999999997654
No 55
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.14 E-value=4.5e-11 Score=112.41 Aligned_cols=148 Identities=13% Similarity=0.126 Sum_probs=92.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHH-----
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLV----- 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~----- 189 (427)
+++ ++++|.|||||||||| ++++.++.++..+.+++++..... ....+.+|+.+++..++...++.+.+...
T Consensus 22 i~~-e~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVF-LELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred ECC-EEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 669 9999999999999999 888888888888888888754322 12345688888877665555665554321
Q ss_pred --------HHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------HHHHHHH
Q 014268 190 --------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 241 (427)
Q Consensus 190 --------~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~~L~~~ 241 (427)
..++...+ ++.+.... ...+++ |++|+...+++++.. +..+.+.
T Consensus 100 ~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 100 RVERDRRVREMAEKLG-----IAHLLDRK-PARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp HHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcC-----CHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11111111 11111111 234444 666666666665532 3333333
Q ss_pred h-hcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 242 L-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 242 l-~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+ ++.|.|||+++|.... +...||.++.|.++.
T Consensus 172 l~~~~g~tvi~vtHd~~~------------------~~~~~d~i~~l~~G~ 204 (240)
T 2onk_A 172 VQREFDVPILHVTHDLIE------------------AAMLADEVAVMLNGR 204 (240)
T ss_dssp HHHHHTCCEEEEESCHHH------------------HHHHCSEEEEEETTE
T ss_pred HHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCE
Confidence 3 3358999999996543 445688888887654
No 56
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.13 E-value=5.8e-11 Score=114.17 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--C---HHHHHHhccccCccc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D---PSLAETIGVKTENLL 175 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~---~~~~~~ig~~~~~l~ 175 (427)
+++|++++|.|||||||||| ++++.++.++..+.+++++.... . ..+.+.+++.+++..
T Consensus 44 i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTL-LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLL 107 (279)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcc
Confidence 66999999999999999999 88888888888888999886543 1 334566888887653
No 57
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.12 E-value=1.4e-10 Score=109.64 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--C-HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~-~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|||||||||| ++++.++.++. +.+++++.... . ..+.+.+++.+++..++...++.+.+
T Consensus 23 i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL-LARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 94 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence 66999999999999999999 78888887777 88888775432 1 34556788888876554444544443
No 58
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.12 E-value=1.6e-10 Score=109.18 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|||||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++. .++.+.+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl 103 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNI 103 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHH
Confidence 66999999999999999999 888888888788888998765432 345567899888765543 3555444
No 59
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.11 E-value=2.6e-10 Score=108.90 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=93.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCC---HHH-HHHhccccCccccCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~---~~~-~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
+++|++++|.|||||||||| ++++.++. .+..+.+++++..... ..+ ...+++.+++..++...++.+++...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence 67999999999999999999 77777773 4556788888764322 222 23378888887666666666655432
Q ss_pred HH-HH--hcC----------C----ccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 190 DT-LI--RSG----------S----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 190 ~~-l~--~~~----------~----~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
.. +. ... . +..+-++ .+....+...+++ |++|+...++++...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg--Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~ 199 (267)
T 2zu0_C 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDSGLDIDA 199 (267)
T ss_dssp HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH--HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 11 10 000 0 0000011 1111111113665 788888888887753
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeee-cceEEEEEecc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIG 291 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~-ad~vi~L~r~~ 291 (427)
+..+.+.+++.++|||+++|.... +... ||.++.|..+.
T Consensus 200 ~~~l~~~l~~l~~~g~tviivtHd~~~------------------~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 200 LKVVADGVNSLRDGKRSFIIVTHYQRI------------------LDYIKPDYVHVLYQGR 242 (267)
T ss_dssp HHHHHHHHHTTCCSSCEEEEECSSGGG------------------GGTSCCSEEEEEETTE
T ss_pred HHHHHHHHHHHHhcCCEEEEEeeCHHH------------------HHhhcCCEEEEEECCE
Confidence 445555555568999999997543 3333 78888886544
No 60
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.10 E-value=5.3e-11 Score=113.98 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=93.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD- 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~- 190 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++. .++.+.+....
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~ 118 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT 118 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc
Confidence 377999999999999999999 888888888888888888764322 345567899988776554 36665543310
Q ss_pred ------H---HHhcCCccEEEEecc----ccc--CCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 191 ------T---LIRSGSVDVVVVDSV----AAL--VPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 191 ------~---l~~~~~~~lvvIDsl----~~l--~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
. ......+.- +++.+ ... .+...+++ |++|+...+|++... +
T Consensus 119 ~~~~~~~~~~~~~~~~~~~-~l~~l~~gl~~~~~~~~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 119 RTPTMEEITAVAMESGAHD-FISGFPQGYDTEVGETGNQLSG--GQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp SCCCHHHHHHHHHHHTCHH-HHHHSTTGGGSBCCGGGTTSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhHHH-HHHhhhcchhhhhcCCcCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 0 000000000 00111 000 11234554 677777777766532 4
Q ss_pred HHHHHHhh-cCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 236 RKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 236 ~~L~~~l~-~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
..+.+.+. +.++|||+++|.... +.. ||.+++|.++.
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~------------------~~~-~d~v~~l~~G~ 233 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSL------------------AER-AHHILFLKEGS 233 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHH------------------HTT-CSEEEEEETTE
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHH------------------HHh-CCEEEEEECCE
Confidence 44444443 458999999996542 333 78888887554
No 61
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.06 E-value=1.1e-10 Score=113.56 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
-+++|++++|+|||||||||| ++++.++..+..+.+++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eN 147 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTI-LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADN 147 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHH-HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHH
T ss_pred EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHH
Confidence 378999999999999999999 788888888888889998876543 356677999998876553 244443
No 62
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.03 E-value=6.1e-11 Score=109.60 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~ 188 (427)
+++|++++|.|||||||||| ++++.++.++..+.+++++.... .+.+.+++.+++..++...++.+.+..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~ 101 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL-LKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKA 101 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 66999999999999999999 88888888877888888775432 245668888888766665677766654
No 63
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.03 E-value=3.5e-10 Score=107.18 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~ 152 (427)
+++|++++|.|||||||||| ++++.++.++..+.++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTL-LDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EETTCEEEEECCSSSSHHHH-HHHHTTSSCCSEEEEE
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEE
Confidence 66999999999999999999 8888888776655554
No 64
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.03 E-value=2.3e-10 Score=107.78 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV-- 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~-- 189 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++..... ..+.+.+++.+++..++. .++.+.+...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~ 101 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE 101 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHH-HHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc
Confidence 367999999999999999999 888888877777778887754322 234456888877654433 2443332211
Q ss_pred --------HHHHhcCCccEEEEecc----ccc--CCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 190 --------DTLIRSGSVDVVVVDSV----AAL--VPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 190 --------~~l~~~~~~~lvvIDsl----~~l--~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
...+...++.- .++.+ ... .+...+++ |++|+...++++... +
T Consensus 102 ~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSg--Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i 178 (243)
T 1mv5_A 102 GDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISG--GQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178 (243)
T ss_dssp SCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHH
T ss_pred CCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCH--HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 11110000000 00000 000 01134554 677777777777653 4
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
..+.+.++ .++|||+++|.... +. .||.+++|..+...
T Consensus 179 ~~~l~~~~-~~~tvi~vtH~~~~------------------~~-~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 179 QKALDSLM-KGRTTLVIAHRLST------------------IV-DADKIYFIEKGQIT 216 (243)
T ss_dssp HHHHHHHH-TTSEEEEECCSHHH------------------HH-HCSEEEEEETTEEC
T ss_pred HHHHHHhc-CCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEE
Confidence 44444444 48999999996432 33 38888888765433
No 65
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.01 E-value=5e-10 Score=106.53 Aligned_cols=151 Identities=16% Similarity=0.209 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV-- 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~-- 189 (427)
-+++|++++|.|||||||||| ++++.++.++ .+.+++++..... ..+.+.+++.+++..++. .++.+.+...
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~ 118 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTI-AKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL 118 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC
Confidence 367999999999999999999 7777777665 6788888754321 334566899888766553 3555544321
Q ss_pred -------HHHHhcCCccEEEEeccc----cc--CCCCccCCcccchhHHHHHHHHHHH--------------------HH
Q 014268 190 -------DTLIRSGSVDVVVVDSVA----AL--VPKGELDGEMGDAHMAMQARLMSQA--------------------LR 236 (427)
Q Consensus 190 -------~~l~~~~~~~lvvIDsl~----~l--~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L~ 236 (427)
...+...++.- .++.+. .. .....+++ |++|+...++++... +.
T Consensus 119 ~~~~~~~~~~l~~~~l~~-~~~~l~~~~~~~~~~~~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~ 195 (260)
T 2ghi_A 119 DATDEEVIKATKSAQLYD-FIEALPKKWDTIVGNKGMKLSG--GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195 (260)
T ss_dssp TCCHHHHHHHHHHTTCHH-HHHTSTTGGGCEESSSSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHH-HHHhccccccccccCCcCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 11111001000 000000 00 01134554 777777777777653 44
Q ss_pred HHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 237 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 237 ~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
.+.+.+++ +.|||+++|.... +. .||.++.|..+.
T Consensus 196 ~~l~~l~~-~~tviivtH~~~~------------------~~-~~d~i~~l~~G~ 230 (260)
T 2ghi_A 196 KAVEDLRK-NRTLIIIAHRLST------------------IS-SAESIILLNKGK 230 (260)
T ss_dssp HHHHHHTT-TSEEEEECSSGGG------------------ST-TCSEEEEEETTE
T ss_pred HHHHHhcC-CCEEEEEcCCHHH------------------HH-hCCEEEEEECCE
Confidence 44444444 8999999996542 33 388888887543
No 66
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.00 E-value=9.5e-10 Score=110.36 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHH----
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 188 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~---- 188 (427)
+++|++++|.|||||||||| ++++.++.. ..+.++|++..... ..+.+.+++.+|+..++. .++.+.+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~ 120 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTL-LSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAH 120 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHH-HHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCS
T ss_pred EcCCCEEEEECCCCChHHHH-HHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcccc
Confidence 67999999999999999999 788888876 67889998876543 345677999998876654 355444321
Q ss_pred ----HHHHHhcCCccEEEEecccccCCC----------CccCCcccchhHHHHHHHHHHH--------------------
Q 014268 189 ----VDTLIRSGSVDVVVVDSVAALVPK----------GELDGEMGDAHMAMQARLMSQA-------------------- 234 (427)
Q Consensus 189 ----~~~l~~~~~~~lvvIDsl~~l~~~----------~~~~~~~g~~~~~~~ar~ls~~-------------------- 234 (427)
+..++..-+ ++.+....|. ..+++ |++|+...+|++...
T Consensus 121 ~~~~v~~~l~~~~-----L~~~~~~~p~~l~~~i~~~g~~LSG--GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 121 SDQEIWKVADEVG-----LRSVIEQFPGKLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp CHHHHHHHHHHTT-----CHHHHTTSTTGGGCEECTTTTTSCH--HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHhC-----CHHHHhhcccccccccccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 111111111 1111111111 12565 788888888887643
Q ss_pred HHHHHHHhhcCCcEEEEEecCCc
Q 014268 235 LRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 235 L~~L~~~l~~~~~tVI~isql~~ 257 (427)
++.+.+.+ ..++|+|+++|...
T Consensus 194 l~~~l~~~-~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 194 IRRTLKQA-FADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHTT-TTTSCEEEECSSSG
T ss_pred HHHHHHHH-hCCCEEEEEEcCHH
Confidence 33333333 24799999999754
No 67
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.92 E-value=1.9e-09 Score=100.02 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC--CHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~--~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
.+|.+++++|++|+||||++++++..+...+..|+++..+... ...++.++|+....+.+. ...++++.+.....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~---~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE---SAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEES---STHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccC---CHHHHHHHHHHHhh
Confidence 4689999999999999999999999998888889998644321 112344556554444332 33556555555444
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCC
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGG 274 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG 274 (427)
...+++|+||++|.+.. .+...++.|+. .+++||++-|..+-.+. .|..+
T Consensus 87 ~~~~dvViIDEaQ~l~~------------------~~ve~l~~L~~----~gi~Vil~Gl~~df~~~-~F~~~------- 136 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD------------------RICEVANILAE----NGFVVIISGLDKNFKGE-PFGPI------- 136 (223)
T ss_dssp CTTCCEEEECSGGGSCT------------------HHHHHHHHHHH----TTCEEEEECCSBCTTSS-BCTTH-------
T ss_pred CCCCCEEEEecCccCcH------------------HHHHHHHHHHh----CCCeEEEEeccccccCC-cCCCc-------
Confidence 56789999999998652 11223444443 38999999997754222 12211
Q ss_pred ceeeeecceEEEEE
Q 014268 275 NALKFYASVRLNIK 288 (427)
Q Consensus 275 ~~ie~~ad~vi~L~ 288 (427)
..+-..||.+..|+
T Consensus 137 ~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 137 AKLFTYADKITKLT 150 (223)
T ss_dssp HHHHHHCSEEEECC
T ss_pred HHHHHHhheEeecc
Confidence 13555889887765
No 68
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.92 E-value=4.6e-09 Score=111.07 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=94.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD- 190 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~- 190 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++....+ ..+.+.+++.+|+..++. .++.+.+....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~ 442 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART 442 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHH-HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC
Confidence 378999999999999999999 788888888888889998865433 345667899988776554 35555443211
Q ss_pred ---------HHHhcCCccEEEEecc----cccC--CCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 191 ---------TLIRSGSVDVVVVDSV----AALV--PKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 191 ---------~l~~~~~~~lvvIDsl----~~l~--~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
..++.-++.- .++.+ .... ....+++ |++|+...+|++... +
T Consensus 443 ~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSg--Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCH--HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 1111111100 00100 0000 1134554 777777777777643 3
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.++.+.+.+ ++|+|+++|.... +. .||.++.|.++..
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i 556 (582)
T 3b60_A 520 QAALDELQK-NRTSLVIAHRLST------------------IE-QADEIVVVEDGII 556 (582)
T ss_dssp HHHHHHHHT-TSEEEEECSCGGG------------------TT-TCSEEEEEETTEE
T ss_pred HHHHHHHhC-CCEEEEEeccHHH------------------HH-hCCEEEEEECCEE
Confidence 333344433 8999999996542 33 3888888876543
No 69
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.87 E-value=1.8e-09 Score=114.09 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=92.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV-- 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~-- 189 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++....+ ..+.+.+++.+|+..++.. ++.+.+...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~ 442 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE 442 (582)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC
Confidence 378999999999999999999 788888877777888888765432 3455678998887655432 444433221
Q ss_pred --------HHHHhcCCccEE------EEecccccCCCCccCCcccchhHHHHHHHHHHH--------------------H
Q 014268 190 --------DTLIRSGSVDVV------VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 235 (427)
Q Consensus 190 --------~~l~~~~~~~lv------vIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~--------------------L 235 (427)
...++.-++.-. -+|..-.- ....+++ |++|+...+|++... +
T Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSg--Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b5x_A 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSG--GQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519 (582)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 111111011000 00111000 1134454 777777777776643 3
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEeccc
Q 014268 236 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 292 (427)
Q Consensus 236 ~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~ 292 (427)
.++.+.+.+ |+|+|+++|.... +. .||.++.|.++..
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i 556 (582)
T 3b5x_A 520 QAALDELQK-NKTVLVIAHRLST------------------IE-QADEILVVDEGEI 556 (582)
T ss_pred HHHHHHHcC-CCEEEEEecCHHH------------------HH-hCCEEEEEECCEE
Confidence 333334433 8999999995432 33 4899999876543
No 70
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.87 E-value=1.1e-09 Score=104.41 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=90.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhc-cccCccccCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIG-VKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig-~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-++ |++++|.|||||||||| ++++.++. +..+.+++++..... .. .+.++ +.+++..+ ..++.+.+.....+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTL-lk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~ 100 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTL-LRAISGLL-PYSGNIFINGMEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEEL 100 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHH-HHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHH
T ss_pred EEC-CEEEEEECCCCCCHHHH-HHHHhCCC-CCCcEEEECCEECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhh
Confidence 488 99999999999999999 78888887 878888887753211 11 34678 88887665 55666665443221
Q ss_pred HhcC------CccEEEEe-cccccCCCCccCCcccchhHHHHHHHHHHH-----------------HHHHHHHhhcCCcE
Q 014268 193 IRSG------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTI 248 (427)
Q Consensus 193 ~~~~------~~~lvvID-sl~~l~~~~~~~~~~g~~~~~~~ar~ls~~-----------------L~~L~~~l~~~~~t 248 (427)
.... -+..+-++ ..... +...+++ |++|+...+++++.. -..+...+++...|
T Consensus 101 ~~~~~~~~~~~l~~~gl~~~~~~~-~~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~t 177 (263)
T 2pjz_A 101 KGLDRDLFLEMLKALKLGEEILRR-KLYKLSA--GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE 177 (263)
T ss_dssp TCCCHHHHHHHHHHTTCCGGGGGS-BGGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred cchHHHHHHHHHHHcCCChhHhcC-ChhhCCH--HHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCc
Confidence 0000 00000111 11111 1234555 777777777776643 22233333332229
Q ss_pred EEEEecCCccccccccCCCeeeccCCceeeeecc-eEEEEEeccccc
Q 014268 249 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYAS-VRLNIKRIGLVK 294 (427)
Q Consensus 249 VI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad-~vi~L~r~~~~~ 294 (427)
||+++|.... +...|| .++.|..+....
T Consensus 178 viivtHd~~~------------------~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 178 GILVTHELDM------------------LNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp EEEEESCGGG------------------GGGCTTSEEEEEETTEEEE
T ss_pred EEEEEcCHHH------------------HHHhcCceEEEEECCEEEE
Confidence 9999996553 344577 777777665443
No 71
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.85 E-value=4.3e-09 Score=98.13 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=43.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++ .+++.+++..++.. ++.+.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl 89 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSL-LMMIMGELEPSEGKIKHSG----------RISFCSQFSWIMPG-TIKENI 89 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEECS----------CEEEECSSCCCCSB-CHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCcCCccEEEECC----------EEEEEecCCcccCC-CHHHHh
Confidence 367999999999999999999 8888888777777777765 25666665544332 444443
No 72
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.84 E-value=8.4e-09 Score=96.63 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSL-LSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTCSEEEEEEEEECS
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECC
Confidence 477999999999999999999 7888888776667677665
No 73
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.83 E-value=3.8e-09 Score=111.94 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=95.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHH--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV-- 189 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~-- 189 (427)
-+++|++++|.|||||||||| ++++.++.++..+.+++++....+ ..+.+.+++.+|+..++. .++.+.+...
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~ 443 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTV-LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGAD 443 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHH-HHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCC
Confidence 378999999999999999999 788888888888889998865443 345667899988776553 3554444221
Q ss_pred ----------HHHHhcCCccEEEEecc----cccC--CCCccCCcccchhHHHHHHHHHHH-------------------
Q 014268 190 ----------DTLIRSGSVDVVVVDSV----AALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 234 (427)
Q Consensus 190 ----------~~l~~~~~~~lvvIDsl----~~l~--~~~~~~~~~g~~~~~~~ar~ls~~------------------- 234 (427)
...++.-++.- .++.+ .... ....+++ |++|+...+|++...
T Consensus 444 ~~~~~~~~~~~~~~~~~~l~~-~~~~l~~g~~~~~~~~~~~LSg--Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~ 520 (595)
T 2yl4_A 444 DPSSVTAEEIQRVAEVANAVA-FIRNFPQGFNTVVGEKGVLLSG--GQKQRIAIARALLKNPKILLLDEATSALDAENEY 520 (595)
T ss_dssp STTTSCHHHHHHHHHHTTCHH-HHHTSSSGGGCBCSSSSCCCCH--HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHH
T ss_pred CccccCHHHHHHHHHHcCCHH-HHHhCcccccccccCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHH
Confidence 11111111100 00111 1110 0134555 777888888877653
Q ss_pred -HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecccc
Q 014268 235 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 293 (427)
Q Consensus 235 -L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~ 293 (427)
+..+.+.+.+ ++|+|+++|.... +. .||.++.|.++...
T Consensus 521 ~i~~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 521 LVQEALDRLMD-GRTVLVIAHRLST------------------IK-NANMVAVLDQGKIT 560 (595)
T ss_dssp HHHHHHHHHHT-TSEEEEECCCHHH------------------HH-HSSEEEEEETTEEE
T ss_pred HHHHHHHHHhc-CCEEEEEecCHHH------------------HH-cCCEEEEEECCEEE
Confidence 3343344433 8999999995432 33 38999988766543
No 74
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.83 E-value=3.4e-09 Score=112.37 Aligned_cols=69 Identities=23% Similarity=0.382 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|||||||||| ++++.++..+..+.+++++....+ ..+.+.+++.+|+..++. .++.+.+
T Consensus 378 i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni 449 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTI-VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENL 449 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHH-HHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHH
Confidence 78999999999999999999 788888888888889998865433 456678999998876653 3555444
No 75
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.82 E-value=2.8e-09 Score=112.75 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=50.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|++++|.||+||||||| ++++.++..+..+.+++++....+ ..+.+++++.+|+..++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTl-l~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 429 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTL-MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHH-HHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc
Confidence 78999999999999999999 788888887888899999876543 45667899998876555
No 76
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.80 E-value=4.2e-09 Score=111.27 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
+++|++++|.|||||||||| ++++.++..+..+.+++++....+ ..+.+.+++.+|+..++.. ++.++
T Consensus 364 i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~en 434 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKEN 434 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHH-HTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHH
T ss_pred ECCCCEEEEECCCCChHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHH
Confidence 78999999999999999999 788888877888889998865433 3566778999887765543 54444
No 77
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.70 E-value=1.7e-08 Score=105.49 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~ 152 (427)
+++|++++|+|+|||||||| ++++.++.++..+.++
T Consensus 291 i~~Gei~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTF-ARILVGEITADEGSVT 326 (538)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHTTSSCCSBCCEE
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEE
Confidence 67999999999999999999 7777777765544444
No 78
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.69 E-value=2.1e-08 Score=96.71 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|.|+|||||||| ++++.++.++..+.+++++ .+++.+++..++.. ++.+.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl 119 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSL-LMMIMGELEPSEGKIKHSG----------RISFCSQNSWIMPG-TIKENI 119 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHH-HHHHTTSSCEEEEEEECCS----------CEEEECSSCCCCSS-BHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECC----------EEEEEeCCCccCcc-cHHHHh
Confidence 67999999999999999999 7888888776666677654 25666665544332 444443
No 79
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.63 E-value=7.2e-09 Score=109.82 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~ 149 (427)
+++|++++|.|+||+||||| ++++.++.++..+
T Consensus 379 v~~Gei~~i~G~NGsGKSTL-lk~l~Gl~~p~~G 411 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEG 411 (607)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHHTSSCCSBS
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHhcCCCCCce
Confidence 57999999999999999999 7777777665443
No 80
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.60 E-value=1e-08 Score=107.28 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~ 149 (427)
+++|++++|+|+|||||||| ++++.++.++..+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~~p~~G 341 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEG 341 (538)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHHTSSCCSBC
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCe
Confidence 46999999999999999999 7777777665433
No 81
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.58 E-value=5.9e-08 Score=111.18 Aligned_cols=147 Identities=16% Similarity=0.256 Sum_probs=92.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHH-------
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA------- 185 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~------- 185 (427)
+++|++++|+|++||||||| ++++.++..+..+.+++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl-~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTV-VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS 1133 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHH-HHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC
Confidence 68999999999999999999 788888887888899999876544 345667899888765443 233222
Q ss_pred --------HHHHHHHHhcCCccEEEEecc----cccC--CCCccCCcccchhHHHHHHHHHHH-----------------
Q 014268 186 --------LSLVDTLIRSGSVDVVVVDSV----AALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 234 (427)
Q Consensus 186 --------~~~~~~l~~~~~~~lvvIDsl----~~l~--~~~~~~~~~g~~~~~~~ar~ls~~----------------- 234 (427)
.+.++.. ++.- .++.+ .... ....+++ |++|+...+|++.+.
T Consensus 1134 ~~~~~~~i~~~~~~~----~~~~-~i~~l~~gldt~vge~G~~LSg--Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1134 RVVSYEEIVRAAKEA----NIHQ-FIDSLPDKYNTRVGDKGTQLSG--GQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp CCCCHHHHHHHHHHH----TCHH-HHSSTTTGGGCBCSTTSCSSCH--HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred CCCCHHHHHHHHHHh----CcHH-HHHhCccccccccCCCCCccCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 2222211 0000 01111 1111 0124555 777787888777653
Q ss_pred ---HHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccCCceeeeecceEEEEEecc
Q 014268 235 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 291 (427)
Q Consensus 235 ---L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~ 291 (427)
+..+.+.+. .|+|||+++|.... +. .||.++.|..+.
T Consensus 1207 ~~~i~~~l~~~~-~~~tvi~isH~l~~------------------i~-~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1207 EKVVQEALDKAR-EGRTCIVIAHRLST------------------IQ-NADLIVVIQNGK 1246 (1284)
T ss_dssp HHHHHHHHHHHS-SSSCEEEECSCTTG------------------GG-SCSEEEEEETBE
T ss_pred HHHHHHHHHHhC-CCCEEEEEecCHHH------------------HH-cCCEEEEEECCE
Confidence 333334433 48999999996543 32 389998887654
No 82
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.57 E-value=8.3e-08 Score=109.98 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=54.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
-+++|++++|+||+||||||| ++++.+...+..+.+++++..... ..+.+.+++.+|+..++.. ++.+.+
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl-~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi 484 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTT-VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENI 484 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHH-HHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHH
Confidence 378999999999999999999 788888877788899998865433 4566779999998766543 444443
No 83
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.53 E-value=9.4e-08 Score=109.83 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
+++|+.++|+||+||||||| ++++..+..+..+.+++|+.+..+ ..+.+++++++|+..++
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL-~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTV-VALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSH-HHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred ECCCCEEEEECCCCChHHHH-HHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEee
Confidence 78999999999999999999 777777777778889999887655 56778899998876443
No 84
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.51 E-value=3.9e-07 Score=104.71 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=51.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~ 177 (427)
-+++|++++|+|++||||||| ++++.+...+..+.+++++....+ ..+.+.+++++|+..++
T Consensus 440 ~i~~G~~vaivG~sGsGKSTl-l~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf 504 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTI-ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF 504 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCC
T ss_pred eecCCcEEEEEecCCCcHHHH-HHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceee
Confidence 378999999999999999999 788888877888899999876554 45677899998866543
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.47 E-value=1.1e-06 Score=76.20 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
.+ +|+.+.|+|+||+|||||+..++..+...+..++|++....... .++
T Consensus 33 ~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~- 81 (149)
T 2kjq_A 33 HK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------------DAA- 81 (149)
T ss_dssp CC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------------GGG-
T ss_pred hc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------------HHH-
Confidence 45 89999999999999999966666656554555899987654322 011
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcE-EEEEecC
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI-LIFINQV 255 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~t-VI~isql 255 (427)
.++++++||.+..+.+ . ....+...+..+ .+.+.+ +|+++|.
T Consensus 82 -~~~~lLilDE~~~~~~---------~-----~~~~l~~li~~~----~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 -FEAEYLAVDQVEKLGN---------E-----EQALLFSIFNRF----RNSGKGFLLLGSEY 124 (149)
T ss_dssp -GGCSEEEEESTTCCCS---------H-----HHHHHHHHHHHH----HHHTCCEEEEEESS
T ss_pred -hCCCEEEEeCccccCh---------H-----HHHHHHHHHHHH----HHcCCcEEEEECCC
Confidence 2578999999987542 1 122333334333 334777 7888774
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.44 E-value=4.5e-07 Score=80.47 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|+.+.|+||||+|||||+..++..+. ..+..++|++....... +.....- . .. ...+ ..+
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~--~-----~~---~~~~---~~~-- 98 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR-LKHLMDE--G-----KD---TKFL---KTV-- 98 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH-HHHHHHH--T-----CC---SHHH---HHH--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HHHHhcC--c-----hH---HHHH---HHh--
Confidence 45689999999999999999888877776 44556777764322111 1110000 0 00 0111 111
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
.+++++++|.+..... .. ... ..+..+.....+.++++|++||..-
T Consensus 99 -~~~~llilDE~~~~~~--------~~----~~~----~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 -LNSPVLVLDDLGSERL--------SD----WQR----ELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp -HTCSEEEEETCSSSCC--------CH----HHH----HHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred -cCCCEEEEeCCCCCcC--------CH----HHH----HHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 2589999999875421 00 111 2333333444446899999998754
No 87
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.37 E-value=6.9e-07 Score=94.55 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~ 149 (427)
+++|++++|.||||+||||| ++++.++.++..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTL-LkiL~Gll~P~~G 132 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTA-LKILAGKQKPNLG 132 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHH-HHHHHTSSCCCTT
T ss_pred CCCCCEEEEECCCCChHHHH-HHHHhcCCCCCCc
Confidence 56899999999999999999 8888887765443
No 88
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.36 E-value=9.4e-07 Score=92.31 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=28.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~ 149 (427)
-.++|++++|.|||||||||| ++++.++.++..+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTL-lkiL~Gl~~p~~G 54 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTV-LKILAGEIIPNFG 54 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHH-HHHHTTSSCCCTT
T ss_pred CCCCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCC
Confidence 456899999999999999999 7787777665433
No 89
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.34 E-value=1.4e-07 Score=100.02 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=26.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~ 147 (427)
+++|++++|.|+||+||||| ++++.++..+.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTL-lkiL~Gll~p~ 144 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTA-VKILAGQLIPN 144 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHH-HHHHTTSSCCC
T ss_pred CCCCCEEEEECCCCChHHHH-HHHHhCCCCCC
Confidence 57999999999999999999 77877776553
No 90
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.33 E-value=1.4e-06 Score=91.11 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=26.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~ 147 (427)
+++|++++|.|+|||||||| ++++.++..+.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTL-lk~l~Gl~~p~ 74 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTA-VKILAGQLIPN 74 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHH-HHHHHTSSCCC
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHhCCCCCC
Confidence 56999999999999999999 77777776543
No 91
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.32 E-value=5.3e-06 Score=87.74 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=27.7
Q ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC
Q 014268 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (427)
Q Consensus 114 GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~ 147 (427)
|-+++|++++|+|+||+||||| ++++.++.++.
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTL-lk~l~Gl~~p~ 405 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTL-IKLLAGALKPD 405 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHH-HHHHHTSSCCS
T ss_pred CccccceEEEEECCCCCcHHHH-HHHHhcCCCCC
Confidence 4578889999999999999999 77777776643
No 92
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.32 E-value=4.7e-06 Score=81.59 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-------HHHHHHhccc--cCccccCCCCCHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVK--TENLLLAQPDCGEQALS 187 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-------~~~~~~ig~~--~~~l~~~~~~~~~~~~~ 187 (427)
++|++++|.|+||+||||++..++..+.+.++.+.+.+.. ... ..+++++|+. .+........++.+.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D-~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD-TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-CSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec-ccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 5899999999999999999777766665556666655443 322 1345566643 33222211112222222
Q ss_pred HHHHHHhcCCccEEEEeccccc
Q 014268 188 LVDTLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 188 ~~~~l~~~~~~~lvvIDsl~~l 209 (427)
... ....++++||.....
T Consensus 206 ~~~----~~~~d~vliDtaG~~ 223 (328)
T 3e70_C 206 HAK----ARGIDVVLIDTAGRS 223 (328)
T ss_dssp HHH----HHTCSEEEEEECCSC
T ss_pred HHH----hccchhhHHhhccch
Confidence 211 234678888876554
No 93
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.29 E-value=2.2e-07 Score=99.73 Aligned_cols=22 Identities=41% Similarity=0.791 Sum_probs=20.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLA 136 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLa 136 (427)
-+++|++++|.||||||||||+
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 3679999999999999999994
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.27 E-value=8.8e-07 Score=85.92 Aligned_cols=38 Identities=34% Similarity=0.371 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
+|+++.|+|+||||||||+..++..+.+.++.+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 68999999999999999966666555544555555443
No 95
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.24 E-value=5.4e-06 Score=85.07 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH-------HH--HHHhccccCccccCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SL--AETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~-------~~--~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
+++|++++|+|+||||||||+..++..+...++.+.+.+. ..... .+ ...+++.+++..... ...+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~-D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p---~~tV~ 365 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG-DTFRAAAVEQLQVWGQRNNIPVIAQHTGADS---ASVIF 365 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC-CTTCHHHHHHHHHHHHHHTCCEECCSTTCCH---HHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC-cccchhhHHHHHHHHHhcCceEEecccCcCH---HHHHH
Confidence 5689999999999999999966666555544555555444 33331 12 223555555432211 11222
Q ss_pred HHHHHHHhcCCccEEEEecccccC
Q 014268 187 SLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 187 ~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
+.+.... ..+.++++||....+.
T Consensus 366 e~l~~a~-~~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 366 DAIQAAK-ARNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHHHHHH-HTTCSEEEECCCCSCC
T ss_pred HHHHHHH-hcCCCEEEEeCCCccc
Confidence 2222222 2467899999887654
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.22 E-value=1.5e-06 Score=77.98 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC---HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~---~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+|.+++++|++|+||||++++++..+...+..++++....... ..+..+.|.......+. ...++++.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~---~~~~~~~~~----- 73 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIE---RPEEMRKYI----- 73 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEES---SGGGGGGGC-----
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEEC---CHHHHHHHh-----
Confidence 4789999999999999999999999887788888875442110 11122233322222111 112221111
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
..+.++|+||.+|.+.+ . +...++.+.. .+++||+......
T Consensus 74 ~~~~dvviIDE~Q~~~~--------~----------~~~~l~~l~~----~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNP--------S----------LFEVVKDLLD----RGIDVFCAGLDLT 114 (184)
T ss_dssp CTTEEEEEECCGGGSCT--------T----------HHHHHHHHHH----TTCEEEEEEESBC
T ss_pred cCCCCEEEEECcccCCH--------H----------HHHHHHHHHH----CCCCEEEEeeccc
Confidence 13578999999998752 1 1123444443 3899998877543
No 97
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.20 E-value=1.3e-06 Score=84.56 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
+++|++++|.|+||+||||++..++..+.+.++.+. +.+.....
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~-l~g~d~~r 140 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGDTFR 140 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCCCSC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-EEeecccc
Confidence 568999999999999999996666665554454554 55554444
No 98
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.18 E-value=2.3e-06 Score=84.86 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
+++|+++.|+|+||+||||++..++..+...++.+. +.+.+...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~-l~g~D~~r 197 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGDTFR 197 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCCCSC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE-Eecccccc
Confidence 568999999999999999996666665554455554 44544444
No 99
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.17 E-value=2.8e-07 Score=81.50 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLAL 137 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal 137 (427)
+++|++++|.|+||||||||+.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 5689999999999999999965
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.10 E-value=3.3e-06 Score=83.69 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
.+|.+++|+||+||||||| ++++.+...+ ++.++. .|++.+.......++..+........+..+ .+...+
T Consensus 121 ~~~g~i~I~GptGSGKTTl-L~~l~g~~~~~~~~~i~t--~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~aL- 193 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT-LAAMLDYLNNTKYHHILT--IEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSAL- 193 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH-HHHHHHHHHHHCCCEEEE--EESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHHT-
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHhcccCCCCcEEEE--ccCcHHhhhhccccceeeeeeccccCCHHH---HHHHHh-
Confidence 4677999999999999999 5555555443 333333 333332111111122212111111123333 333333
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
..+++++++|.+... +....+..+ .+.|.+||+++|.+...
T Consensus 194 ~~~PdvillDEp~d~--------------------e~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDL--------------------ETIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSH--------------------HHHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCH--------------------HHHHHHHHH----HhcCCEEEEEEccChHH
Confidence 357999999987521 111222222 23599999999987654
No 101
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.10 E-value=4.3e-07 Score=81.16 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccc----cCccc-cCCCCCHHHHHHHHHHHHhc
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLL-LAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~----~~~l~-~~~~~~~~~~~~~~~~l~~~ 195 (427)
++.|.|++|||||+||.+++.. +.+++|+++...++..+.+++.-. +.... +..|....+. +... .
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~---l~~~--~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL---ITAD--L 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT---SCTT--S
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHH---HHhh--c
Confidence 4789999999999999998754 567999999876654333322111 11111 1122222221 1111 1
Q ss_pred CCccEEEEecccccCCCCccC--C--cccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEec
Q 014268 196 GSVDVVVVDSVAALVPKGELD--G--EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~~~~~~~--~--~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isq 254 (427)
...+.|+||+++.+.....+. . +............+...+..|...+++...++|++|.
T Consensus 72 ~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsN 134 (180)
T 1c9k_A 72 APDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN 134 (180)
T ss_dssp CTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEc
Confidence 123699999999876321111 0 0000000000122334555555555556777777654
No 102
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.08 E-value=8.5e-06 Score=73.55 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC---CHHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~---~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
.+|.++.++|+.|+||||.++.++.++...+..|+++...... ...+..++|+......+... .++++.+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~---- 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYF---- 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHH----
Confidence 4688999999999999999999999998888888887522111 11233444543332333222 2332221
Q ss_pred hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccC
Q 014268 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 273 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~g 273 (427)
. ...++|+||..|.+.+ .+...++.|.. .+++||+.....+--+. .|..+
T Consensus 79 ~-~~~dvViIDEaqfl~~------------------~~v~~l~~l~~----~~~~Vi~~Gl~~df~~~-~F~~~------ 128 (191)
T 1xx6_A 79 E-EDTEVIAIDEVQFFDD------------------EIVEIVNKIAE----SGRRVICAGLDMDFRGK-PFGPI------ 128 (191)
T ss_dssp C-TTCSEEEECSGGGSCT------------------HHHHHHHHHHH----TTCEEEEEECSBCTTSC-BCTTH------
T ss_pred h-ccCCEEEEECCCCCCH------------------HHHHHHHHHHh----CCCEEEEEecccccccC-cCccH------
Confidence 1 2479999999988652 11233444433 38999998664432111 12111
Q ss_pred CceeeeecceEEEEE
Q 014268 274 GNALKFYASVRLNIK 288 (427)
Q Consensus 274 G~~ie~~ad~vi~L~ 288 (427)
..+-..||.|..+.
T Consensus 129 -~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 129 -PELMAIAEFVDKIQ 142 (191)
T ss_dssp -HHHHHHCSEEEECC
T ss_pred -HHHHHHcccEEeee
Confidence 13555678776554
No 103
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=1.8e-06 Score=95.37 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
+++|++++|.|+|||||||| ++++.++.++..+.+++..
T Consensus 696 I~~GeivaIiGpNGSGKSTL-LklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTL-INVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EETTCEEEECSCCCHHHHHH-HHHHTTSSCCSEEEEEECT
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEcC
Confidence 67999999999999999999 8888888777777777763
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.04 E-value=5.7e-05 Score=74.47 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=54.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCH-----HHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~-----~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
.+.|+|+||+|||||+..++..+... +..++|++....... .+...++.... .......+++..+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHHHHHHh
Confidence 89999999999999988877776555 467888886544331 22333333211 112245555555544443
Q ss_pred -cCCccEEEEeccccc
Q 014268 195 -SGSVDVVVVDSVAAL 209 (427)
Q Consensus 195 -~~~~~lvvIDsl~~l 209 (427)
.+++.+++||.++.+
T Consensus 122 ~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCEEEEEETGGGS
T ss_pred hcCCeEEEEEECcccc
Confidence 345789999999887
No 105
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.02 E-value=8.1e-06 Score=74.76 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC---CHHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~---~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
.+|.+.+++|+.|+||||.++..+.++...+..|++|...-.. +..+..++|+......+... .++++.+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~---- 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHI---- 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG---GGGGGGC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH---HHHHHHH----
Confidence 4689999999999999999999999998888889888633221 12455566665443333221 2222111
Q ss_pred hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeeccC
Q 014268 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 273 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~g 273 (427)
....++|+||..|.+.+ + +...++.|+. .+++||+.-...+--+. .|..+.
T Consensus 99 -~~~~dvViIDEaQF~~~---------~---------~V~~l~~l~~----~~~~Vi~~Gl~~DF~~~-~F~~~~----- 149 (214)
T 2j9r_A 99 -TEEMDVIAIDEVQFFDG---------D---------IVEVVQVLAN----RGYRVIVAGLDQDFRGL-PFGQVP----- 149 (214)
T ss_dssp -CSSCCEEEECCGGGSCT---------T---------HHHHHHHHHH----TTCEEEEEECSBCTTSC-BCTTHH-----
T ss_pred -hcCCCEEEEECcccCCH---------H---------HHHHHHHHhh----CCCEEEEEecccccccC-ccccHH-----
Confidence 13589999999999752 1 1134444443 49999998775553221 122111
Q ss_pred CceeeeecceEEEEE
Q 014268 274 GNALKFYASVRLNIK 288 (427)
Q Consensus 274 G~~ie~~ad~vi~L~ 288 (427)
.+-.+||.|..|.
T Consensus 150 --~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 150 --QLMAIAEHVTKLQ 162 (214)
T ss_dssp --HHHHHCSEEEECC
T ss_pred --HHHHhcccEEeee
Confidence 3445678776654
No 106
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=7.4e-05 Score=74.81 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++-.=+.|+||||+|||+||..+|..+ +...+.+++...... .....+..+..+-...+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk----------------~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK----------------YIGEGSRMVRELFVMAR 238 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc----------------ccchHHHHHHHHHHHHH
Confidence 56655559999999999999998887766 345566654322110 00112222222222234
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
...+.+|+||.+.++.+...-.+..+.. ...+.+...|..|-..-...++.||+.+.....+.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 5678899999999987533222111111 22344555565554443445677787777655543
No 107
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=7.4e-05 Score=75.75 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++-.=+.|+||||+|||+||..+|..+ +...+++++...... .....+..+..+-....
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk----------------~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK----------------YIGESARIIREMFAYAK 271 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS----------------SSSHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc----------------cchHHHHHHHHHHHHHH
Confidence 67777779999999999999998888776 345666654322110 00112222222333334
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
...+.+|+||.+-.+.+...-.+..+.. ...+.+...|..|-..-...++.||+.|.....+.
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred hcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 5678999999999887533222211111 22233444455443332334677777776555443
No 108
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00011 Score=74.08 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=71.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++-.=+.|+||||+|||+||..+|..+ +...+.+++...... .....+..+..+-...+
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~sk----------------~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQK----------------YLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCCS----------------SSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhhc----------------cCchHHHHHHHHHHHHH
Confidence 67766779999999999999998888776 345555654322110 01112233322223334
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
...+.+|+||.+.++.+...-.+..++. ...+.+...|..+-..-...++.||+.|.....+.
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 5678899999999887533222211222 22344455555554333345677887777665544
No 109
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=8.5e-06 Score=90.03 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=21.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia 140 (427)
+++|++++|.|+||||||||+..++
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999999944444
No 110
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=3.1e-05 Score=74.73 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHH-HHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALS-LVDT 191 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~-~~~~ 191 (427)
|.++.+.|++|+||||++.+++..+...++.+++++....... .++...|++.-. .....+..+++. .+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--EPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--CTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--cCCCCCHHHHHHHHHHH
Confidence 8899999999999999999999998888889999988754331 223444443211 011223444432 2333
Q ss_pred HHhcCCccEEEEeccccc
Q 014268 192 LIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l 209 (427)
....+.++|+||....+
T Consensus 176 -~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 -FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp -HHHTTCSEEEEECCCSC
T ss_pred -HHhCCCCEEEEeCCCCc
Confidence 23356899999996544
No 111
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=7.1e-05 Score=75.69 Aligned_cols=123 Identities=19% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++..=++|+||||+|||+||..+|..+ +...+.+++...... .....+..+..+-...+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~----------------~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK----------------YLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS----------------SCSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc----------------ccchhHHHHHHHHHHHH
Confidence 57666779999999999999998888766 345666654322110 00011222222222233
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
...+.+++||.+..+.+........++. ...+.++..|..+-......++.||+.|+....+
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 4568899999998876432211111111 2234555666666554445677888887755544
No 112
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.94 E-value=9.9e-05 Score=69.90 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+.++.-+.|+||||+|||+||..++..+ +...++++....... ........+..+-....
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK----------------FIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh----------------ccchHHHHHHHHHHHHH
Confidence 57777889999999999999988776654 445666654322110 00111222222222233
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
...+.+++||.+..+.+...-....+.. ...+.+...+..+.......++.||++++....
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDR---EVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGG---HHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HcCCeEEEEECHHHhcccCccccCCccH---HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 4567899999999886422111000111 122333333333322122346777777765443
No 113
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=7.2e-05 Score=75.78 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++-.=+.|+||||+|||+||..+|..+ +...+.+++...... .....+..+..+-...+
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~----------------~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM----------------YIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS----------------CSSHHHHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc----------------ccchHHHHHHHHHHHHH
Confidence 67777779999999999999988887766 345566654322110 00112222222222233
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
...+.+|+||.+..+.+...-.+..+.. ...+.+...|..|-..-...++.||+.|.....+.
T Consensus 272 ~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 272 EKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp HHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred hcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 4568899999999886432211111111 12233444444443322334677887776555443
No 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.92 E-value=4.5e-05 Score=74.85 Aligned_cols=89 Identities=22% Similarity=0.286 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhc---CceEEEEeCCCCCC-HHHHH----HhccccCccccCCCCCHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD-PSLAE----TIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~---~~~vv~is~E~~~~-~~~~~----~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
.+..+.|+|+||+|||||+..++..+... +..++|++...... ..... .++.... ....+..+++..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 119 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRRL 119 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHHH
Confidence 56789999999999999988888776554 56788887543222 11122 2222111 1122355555555
Q ss_pred HHHHhc-CCccEEEEecccccC
Q 014268 190 DTLIRS-GSVDVVVVDSVAALV 210 (427)
Q Consensus 190 ~~l~~~-~~~~lvvIDsl~~l~ 210 (427)
...+.. +.+.+++||.++.+.
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHhccCCeEEEEEcChhhhh
Confidence 544443 347799999998876
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.91 E-value=6.6e-05 Score=69.44 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHHHhc
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~ 195 (427)
.|.+..++|+.|+||||.+++.+.++...+..|++|....... ..+..++|+......+... .++++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~------ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA------ 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh------
Confidence 5899999999999999999999999988888888875332211 3345555665444333322 2233222
Q ss_pred CCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
...++|+||..|.+.. +.+.++.+ ...|++||+.-...+
T Consensus 89 ~~~dvViIDEaQF~~~-------------------v~el~~~l----~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-------------------IVEFCEAM----ANAGKTVIVAALDGT 127 (234)
T ss_dssp TTCSEEEESSGGGCTT-------------------HHHHHHHH----HHTTCEEEEECCSBC
T ss_pred ccCCEEEEEchhhhhh-------------------HHHHHHHH----HhCCCEEEEEecccc
Confidence 4589999999999741 11222222 235999999877654
No 116
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.90 E-value=4e-05 Score=72.50 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC-ceEEEEeC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDA 155 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~-~~vv~is~ 155 (427)
+++|++++|+||+||||||| ++++.+...+. .+.+++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl-l~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT-IASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH-HHHHHHHHHHHCCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHH-HHHHHHhCCCCCCCEEEEcC
Confidence 67999999999999999999 55555555443 34444443
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.89 E-value=5.7e-07 Score=82.45 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~ 146 (427)
++++|++++|.|||||||||| ++++.++ ++
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl-~p 47 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYL-AMAKAVQ-AL 47 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHH-HHHHHHH-HH
T ss_pred hccCCCEEEEECCCCCCHHHH-HHHHhcC-CC
Confidence 467899999999999999999 6666666 54
No 118
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.86 E-value=1.6e-05 Score=85.34 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLA 136 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLa 136 (427)
+++|++++|.||||||||||+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ecCCCEEEEEeeCCCCHHHHH
Confidence 679999999999999999995
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.84 E-value=6e-05 Score=67.93 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC--HHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~--~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
..|.+..|+|+.|+||||.+++.+.+....+..++|+..+.... ..+..++|...+-..+.. ..++.+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~---~~d~~~~------ 88 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACL---LRDVAQE------ 88 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESS---GGGGHHH------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCC---HHHHHHh------
Confidence 36899999999999999888999999988888999997653222 224444554333222222 2223222
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 257 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~ 257 (427)
...+++|+||.+|.+ + . +...+..|. +.|++||+.....+
T Consensus 89 ~~~~DvIlIDEaQFf-k--------~----------~ve~~~~L~----~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF-P--------D----------IVEFCEAMA----NAGKTVIVAALDGT 128 (195)
T ss_dssp HHTCSEEEESSGGGC-T--------T----------HHHHHHHHH----HTTCEEEEEEESBC
T ss_pred ccCCCEEEEEchhhh-H--------H----------HHHHHHHHH----HCCCeEEEEecccc
Confidence 124899999999998 4 1 112344554 35999999876655
No 120
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.84 E-value=1.9e-05 Score=77.42 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+++|++++|.|++||||||| ++++.++..+..+.+.++..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl-l~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY-IKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH-HHHGGGGSCTTSCEEEEESS
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCcEEEECCe
Confidence 34899999999999999999 77777777777778888764
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.84 E-value=0.00046 Score=69.94 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
++.++.++|+||+||||++.+++..+...+..|++++....... .++...+++.-.. ....+...++...-.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~--~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGN--PQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECC--TTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEec--CCCCCHHHHHHHHHH
Confidence 46799999999999999999999999888889999987643321 2344445432111 111233333322222
Q ss_pred HHhcCCccEEEEecccccC
Q 014268 192 LIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l~ 210 (427)
.....++++|+||....+.
T Consensus 177 ~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHTTCSEEEEECCCCSS
T ss_pred HHHhCCCCEEEEECCCccc
Confidence 2334568999999876543
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=0.00018 Score=69.58 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCCCCCHHHH-HHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA-LSLV 189 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~~~~~~~~-~~~~ 189 (427)
.+|+++.|+|+||+||||++.+++..+...++.|++++...... ..+....++.. +..........+ ...+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHHH
Confidence 47899999999999999999999988877777888887653221 12344445432 100111222222 1222
Q ss_pred HHHHhcCCccEEEEecccc
Q 014268 190 DTLIRSGSVDVVVVDSVAA 208 (427)
Q Consensus 190 ~~l~~~~~~~lvvIDsl~~ 208 (427)
... ...++++++||....
T Consensus 180 ~~a-~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHA-LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHH-HHTTCSEEEEEECCC
T ss_pred HHH-HhcCCCEEEEECCCc
Confidence 222 235689999997654
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.79 E-value=0.00015 Score=71.17 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCCH-----HHHHHhccccCccccCCCCCHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQAL 186 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~~-----~~~~~ig~~~~~l~~~~~~~~~~~~ 186 (427)
.+..+.|+||||+|||+|+..++..+... +..++|++....... .+...++.... ....+..+++
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~ 118 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEVY 118 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence 45689999999999999988888777543 567888887654442 23344443211 1122355555
Q ss_pred HHHHHHHh-cCCccEEEEecccccC
Q 014268 187 SLVDTLIR-SGSVDVVVVDSVAALV 210 (427)
Q Consensus 187 ~~~~~l~~-~~~~~lvvIDsl~~l~ 210 (427)
..+...+. .+...+++||.++.+.
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHhccCCeEEEEEccHhhhc
Confidence 55444443 3346799999998876
No 124
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=97.78 E-value=0.00019 Score=62.48 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEc-CCCCCHHHHHHHHHHHhhh--cCceEEEEeCCCCCCHHHHHHhccccCc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYG-PEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTEN 173 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G-~pGsGKTTLal~ia~~~~~--~~~~vv~is~E~~~~~~~~~~ig~~~~~ 173 (427)
-+.+|.|.+.+|..+.-||++.|.+++|.. .+|.|=..|++-++..+.. .++.++||..............|+++++
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~r 101 (161)
T 1oft_A 22 SNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRER 101 (161)
T ss_dssp ---------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGG
T ss_pred CccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHH
Confidence 356799999999988438899999999984 5888877777777777654 5678999988777777888899999999
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCccEEEEe
Q 014268 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVD 204 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~l~~~~~~~lvvID 204 (427)
+.+.++.+..+.+..+++.++.+.+..|+..
T Consensus 102 ll~v~~~~~~daLwa~EqALrsG~~~aVl~W 132 (161)
T 1oft_A 102 ILLLQAKDNAAALALSCEALRLGRSHTVVSW 132 (161)
T ss_dssp EEEECCSSTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHhcCCccEEEEC
Confidence 9999998888899999999999999888864
No 125
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00026 Score=71.91 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++-.=++|+||||+|||+||..+|..+ +...+.+++...... .....+..+..+-...+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~sk----------------~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQK----------------YVGEGARMVRELFEMAR 299 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCCC----------------SSSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhcc----------------cCCHHHHHHHHHHHHHH
Confidence 67777779999999999999998888766 335555554322110 00112222222222334
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 259 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v 259 (427)
...+.+|+||.+..+.+...-.+. +.. ....+.+...|..|-..-...++.||+.|.....+
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~-~~~--~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGA-GGD--NEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSC-GGG--GHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred hcCCceEeecccccccccccCcCC-Ccc--HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 567889999999988743222211 111 12223444455544333233466777776655443
No 126
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.76 E-value=3.5e-05 Score=84.83 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLAL 137 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal 137 (427)
+++|++++|+|+||||||||+.
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHHH
T ss_pred EcCCcEEEEEccCCCChhhhHH
Confidence 6799999999999999999963
No 127
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.76 E-value=8.1e-05 Score=68.01 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.+..+.|+|+||+|||+|+..++..+...+..++|++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 5778999999999999999999888877777888887643
No 128
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.71 E-value=0.00043 Score=70.08 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
++.+++++|+||+||||++.+++..+...+..|++++....... .++...|+.... .........+....-.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~--~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG--EPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC--CTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceee--ccccCCHHHHHHHHHH
Confidence 57899999999999999999999999888889999887633221 123333432211 1111223333322222
Q ss_pred HHhcCCccEEEEeccccc
Q 014268 192 LIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l 209 (427)
......+++++||....+
T Consensus 174 ~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HTTTTTCSEEEEEECCCS
T ss_pred HHHhcCCCEEEEECCCCc
Confidence 223357899999977543
No 129
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.70 E-value=3.5e-05 Score=76.00 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=46.3
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
..+.||...||.++. +.+|++++|.|+||+||||| ++++.+...++.+++.+.++.
T Consensus 53 ~~~~tg~~ald~ll~---i~~Gq~~gIiG~nGaGKTTL-l~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 53 QPFILGVRAIDGLLT---CGIGQRIGIFAGSGVGKSTL-LGMICNGASADIIVLALIGER 108 (347)
T ss_dssp SEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHH-HHHHHHHSCCSEEEEEEESCC
T ss_pred eecCCCCEEEEeeee---ecCCCEEEEECCCCCCHHHH-HHHHhcCCCCCEEEEEEeccc
Confidence 345688999999965 88999999999999999999 777777777766777776664
No 130
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.70 E-value=0.00012 Score=80.48 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia 140 (427)
|++|++++|+|+||||||||+..++
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6799999999999999999976544
No 131
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.70 E-value=0.0004 Score=67.52 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=50.5
Q ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 114 GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
|+..+..-+.|+||||+|||+||..++..+ .+...++++....... .+ ..+ +..+..+-...
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~-------------~~--g~~-~~~~~~lf~~a 101 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK-------------WL--GES-EKLVKNLFQLA 101 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCS-------------SC--CSC-HHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhh-------------hh--hHH-HHHHHHHHHHH
Confidence 356677889999999999999988887765 2345666665432210 00 111 22222222223
Q ss_pred hcCCccEEEEecccccCC
Q 014268 194 RSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~ 211 (427)
....+.+++||.+..+.+
T Consensus 102 ~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHTSSEEEEEETTTGGGC
T ss_pred HhcCCcEEEeecHHHhcc
Confidence 345688999999999864
No 132
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.70 E-value=0.00011 Score=81.08 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia 140 (427)
|++|++++|+|+||||||||+..++
T Consensus 665 I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 665 FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6799999999999999999976644
No 133
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.67 E-value=5.1e-05 Score=77.18 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=46.8
Q ss_pred ccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 99 ~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.+.||...||.++. +.+|++++|.|+||+||||| ++++.+...++.+++.+.++.
T Consensus 140 ~~~tg~~vld~vl~---i~~Gq~~~IvG~sGsGKSTL-l~~Iag~~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 140 VLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVL-LGMMARYTRADVIVVGLIGER 194 (438)
T ss_dssp BCCCSCHHHHHHSC---CBTTCEEEEEECTTSSHHHH-HHHHHHHSCCSEEEEEEESCC
T ss_pred ecCCCceEEeeeEE---ecCCCEEEEECCCCCCHHHH-HHHHhcccCCCeEEEEEecee
Confidence 45678899999964 99999999999999999999 778888777777888888773
No 134
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.67 E-value=0.00017 Score=72.24 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
-+.+| +++|+|+||+||||| +.++..+
T Consensus 57 ~~~~G-~~~lvG~NGaGKStL-l~aI~~l 83 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSII-VDALGLL 83 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHH-THHHHHH
T ss_pred ecCCC-cEEEECCCCCCHHHH-HHHHHHH
Confidence 47799 999999999999999 5555444
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.66 E-value=2.9e-05 Score=69.00 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
++++|++++|.|+||||||||+..++. . .+.+.+++++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~-~--~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN-L--PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT-C--SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh-c--cCCCeEEEccc
Confidence 588999999999999999999655544 3 45567888765
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=0.00019 Score=70.17 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=23.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+.|+||||+||||++..++..+..++.+.++++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 89999999999999877777665555555555543
No 137
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.63 E-value=7.8e-05 Score=68.21 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=78.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC---CHHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~---~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
-..|.+.+|+|+-|+||||.++..+.++...+..+++|...-.. ...++.++|...+-..+... .++++.+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i--- 98 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD--- 98 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH---
Confidence 35689999999999999998888888888777788777543221 12455566655444333322 2222111
Q ss_pred HhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccCCCeeecc
Q 014268 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 272 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~~~~~~~~ 272 (427)
..+.++|+||..|.+.+ .+...+..|+ ..|++||+--=..+--+ .|.
T Consensus 99 --~~~~dvV~IDEaQFf~~------------------~~v~~l~~la----~~gi~Vi~~GLd~DF~~---------~~F 145 (219)
T 3e2i_A 99 --LTNVDVIGIDEVQFFDD------------------EIVSIVEKLS----ADGHRVIVAGLDMDFRG---------EPF 145 (219)
T ss_dssp --CTTCSEEEECCGGGSCT------------------HHHHHHHHHH----HTTCEEEEEEESBCTTS---------CBC
T ss_pred --hcCCCEEEEechhcCCH------------------HHHHHHHHHH----HCCCEEEEeeccccccc---------CCC
Confidence 24688999999999862 1224455555 25999888654333211 111
Q ss_pred CC-ceeeeecceEEEEE
Q 014268 273 GG-NALKFYASVRLNIK 288 (427)
Q Consensus 273 gG-~~ie~~ad~vi~L~ 288 (427)
+| ..+--+||.+..|.
T Consensus 146 ~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 146 EPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp TTHHHHHHHCSEEEEEC
T ss_pred ccHHHHHHhcceEEEee
Confidence 11 13445677776664
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.62 E-value=0.00025 Score=68.24 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLV 189 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~~~ 189 (427)
.+|++++|+|++|+||||++..++..+.. .|..|++++....... .++...|+.. .......++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~al 177 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQAK 177 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHHH
Confidence 36899999999999999999999888875 5668999887643211 1222233321 1112334443333
Q ss_pred HHHHhcCCccEEEEecc
Q 014268 190 DTLIRSGSVDVVVVDSV 206 (427)
Q Consensus 190 ~~l~~~~~~~lvvIDsl 206 (427)
..+ .++++++||..
T Consensus 178 ~~~---~~~dlvIiDT~ 191 (296)
T 2px0_A 178 ELF---SEYDHVFVDTA 191 (296)
T ss_dssp HHG---GGSSEEEEECC
T ss_pred HHh---cCCCEEEEeCC
Confidence 322 56899999943
No 139
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.60 E-value=0.00013 Score=72.53 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=46.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+++|++++|+||+|||||||+..++..+... .+.++++.. +.+..+...+++.++...-..+... ...+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~--~~e~~~~~~~~~v~Q~~~g~~~~~~---~~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED--PIEYVFKHKKSIVNQREVGEDTKSF---ADALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES--SCCSCCCCSSSEEEEEEBTTTBSCS---HHHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc--cHhhhhccCceEEEeeecCCCHHHH---HHHHHHHhh
Confidence 5789999999999999999944444444333 345555543 2221112223444332100011111 123333333
Q ss_pred cCCccEEEEeccc
Q 014268 195 SGSVDVVVVDSVA 207 (427)
Q Consensus 195 ~~~~~lvvIDsl~ 207 (427)
.+++++++|.+.
T Consensus 208 -~~pd~illdE~~ 219 (372)
T 2ewv_A 208 -EDPDVIFVGEMR 219 (372)
T ss_dssp -SCCSEEEESCCC
T ss_pred -hCcCEEEECCCC
Confidence 368999999765
No 140
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.60 E-value=0.0011 Score=66.88 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHHH-HHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALS-LVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~~-~~~ 190 (427)
++.++.|+|++|+||||++.+++..+...++.|++++....... .++...|++. +......+..+++. .+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v--~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE--EecCCCCCHHHHHHHHHH
Confidence 57899999999999999999999988888888999887532211 1223334331 00111123334422 222
Q ss_pred HHHhcCCccEEEEecccccC
Q 014268 191 TLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~ 210 (427)
.+ .....++|+||....+.
T Consensus 175 ~~-~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 175 KA-RLEARDLILVDTAGRLQ 193 (425)
T ss_dssp HH-HHTTCSEEEEECCCCSS
T ss_pred HH-HHCCCCEEEEcCCCccc
Confidence 22 23568999999876543
No 141
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.60 E-value=7.1e-05 Score=81.72 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALH 138 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ 138 (427)
-|++|++++|+|+||||||||+..
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCC
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHH
Confidence 378999999999999999999654
No 142
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.59 E-value=9.5e-06 Score=73.08 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
|++++|.|+||+|||||+..++..+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 68899999999999999554444443
No 143
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.59 E-value=3e-05 Score=67.76 Aligned_cols=39 Identities=23% Similarity=0.104 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++|++++|.||+|+||||| ++++.++. +..+.+.+.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTL-lr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTL-TRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHH-HHHHHHHT-TCCSCCCCCT
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHHHhC-CCCCeEEECC
Confidence 367999999999999999999 55555555 4444444443
No 144
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.57 E-value=0.0009 Score=61.66 Aligned_cols=43 Identities=26% Similarity=0.180 Sum_probs=36.2
Q ss_pred CCCE-EEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 118 KGRV-VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 118 ~G~l-i~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
+|.+ +.+.|+||+||||++++++..++..|..|++++.+.-..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 5676 777899999999999999999998888898888775433
No 145
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.55 E-value=5.4e-05 Score=83.45 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia 140 (427)
+++|++++|.||||+|||||+..++
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHH
Confidence 6789999999999999999955544
No 146
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.55 E-value=0.00026 Score=68.89 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
..+|.++.|+|++|+||||++.+++..+...++.|++++...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357899999999999999999999998887788899988764
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.55 E-value=0.00056 Score=63.59 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=43.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|++...-+.|+||||+|||+||..++..+ +...++++....... ........+...+.. ..
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-a~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---------------IGGLGAARVRSLFKE-AR 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS---------------STTHHHHHHHHHHHH-HH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh---------------ccChhHHHHHHHHHH-HH
Confidence 45566678999999999999988887755 445677765432210 000011112222222 22
Q ss_pred cCCccEEEEecccccCC
Q 014268 195 SGSVDVVVVDSVAALVP 211 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~ 211 (427)
...+.+++||.+..+..
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34578999999998863
No 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.54 E-value=0.0003 Score=62.42 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
.++|.||||+|||||+ +++.+..
T Consensus 2 ~i~l~G~nGsGKTTLl-~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV-KKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5889999999999995 5555443
No 149
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.53 E-value=0.0012 Score=61.54 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=44.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhc
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~ 195 (427)
+++| +.|+|+||+||||||..++... +.+.++++....... .+ ......+...+.. ...
T Consensus 44 ~~~~--vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-------------~~--~~~~~~~~~~~~~-a~~ 102 (257)
T 1lv7_A 44 IPKG--VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-------------FV--GVGASRVRDMFEQ-AKK 102 (257)
T ss_dssp CCCE--EEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS-------------CC--CCCHHHHHHHHHH-HHT
T ss_pred CCCe--EEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH-------------hh--hhhHHHHHHHHHH-HHH
Confidence 3444 8899999999999987776654 345677765432210 00 1112222222222 223
Q ss_pred CCccEEEEecccccCC
Q 014268 196 GSVDVVVVDSVAALVP 211 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~~ 211 (427)
..+.++++|.+..+.+
T Consensus 103 ~~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 103 AAPCIIFIDEIDAVGR 118 (257)
T ss_dssp TCSEEEEETTHHHHTC
T ss_pred cCCeeehhhhhhhhcc
Confidence 4567999999987764
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.53 E-value=0.0002 Score=69.20 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCC-CHHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~-~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
..+|.+++|+|++|||||||+..++..+. ..++.+.+++..... .....+.+|+. +........+..+++..+..+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 36899999999999999999554444333 234456565544322 22334556766 554444445677777766655
Q ss_pred H
Q 014268 193 I 193 (427)
Q Consensus 193 ~ 193 (427)
.
T Consensus 156 ~ 156 (308)
T 1sq5_A 156 K 156 (308)
T ss_dssp T
T ss_pred h
Confidence 3
No 151
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.51 E-value=0.00026 Score=67.93 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++...+.|+||||+|||+||..++..+ +..+++++...... ...|.. +....+.+..+..+.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~----~~~g~~--------~~~i~~~f~~a~~~~~ 96 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES----GNAGEP--------AKLIRQRYREAAEIIR 96 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC----C---HH--------HHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh----ccCchh--------HHHHHHHHHHHHHHHh
Confidence 56666789999999999999998888776 45667766421100 000100 0011222333333334
Q ss_pred cCCccEEEEecccccCC
Q 014268 195 SGSVDVVVVDSVAALVP 211 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~ 211 (427)
...+.+++||.+..+.+
T Consensus 97 ~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TSSCCCEEEECCC----
T ss_pred cCCCeEEEEechhhhcC
Confidence 56788999999988764
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.0013 Score=62.50 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 197 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 197 (427)
++.-+.|+||||+|||+||..++... +...++++....... ...........+-.......
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHcC
Confidence 56789999999999999988777655 345566655322110 01122333322222333456
Q ss_pred ccEEEEecccccCC
Q 014268 198 VDVVVVDSVAALVP 211 (427)
Q Consensus 198 ~~lvvIDsl~~l~~ 211 (427)
+.+++||.+..+.+
T Consensus 114 ~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 114 PSIIFIDEVDSLLS 127 (297)
T ss_dssp SEEEEEETGGGTSB
T ss_pred CcEEEeccHHHhcc
Confidence 88999999999874
No 153
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.51 E-value=0.00034 Score=67.69 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.+..+.|+||||+|||||+..++..+...+..++|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456799999999999999888887776667788998754
No 154
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.50 E-value=0.00019 Score=79.26 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia 140 (427)
+++|++++|.||||+|||||+..++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999966553
No 155
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.00021 Score=68.64 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|++++..+.|+||||+|||+||..++..+ +.+.++++... .....+|.. ......++..+ .
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~----l~~~~~g~~--------~~~~~~~f~~a----~ 105 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFGES--------EANVREIFDKA----R 105 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH----HHHHHHTTC--------TTHHHHHHHHH----H
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH----HHhhhcCch--------HHHHHHHHHHH----H
Confidence 68889999999999999999988777655 34556665321 111112211 11122222222 2
Q ss_pred cCCccEEEEecccccCC
Q 014268 195 SGSVDVVVVDSVAALVP 211 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~ 211 (427)
...+.+++||.+..+.+
T Consensus 106 ~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAK 122 (301)
T ss_dssp HTCSEEEEECSTTHHHH
T ss_pred hcCCeEEEEEChHHHhh
Confidence 34578999999988753
No 156
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.47 E-value=0.00092 Score=63.81 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 197 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 197 (427)
...+.|.||||+|||++|..++..+...+.++++++...... ......+|..+....+... ..+. ..+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~----~~~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLT----EAVRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHH----HHHHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHH----HHHHhCC
Confidence 458999999999999998888887766667788887654433 2344455655443322211 1111 2222344
Q ss_pred ccEEEEecccccC
Q 014268 198 VDVVVVDSVAALV 210 (427)
Q Consensus 198 ~~lvvIDsl~~l~ 210 (427)
..+++||.+..+.
T Consensus 120 ~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 120 YSVILFDAIEKAH 132 (311)
T ss_dssp SEEEEEETGGGSC
T ss_pred CeEEEEeChhhcC
Confidence 5799999998775
No 157
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.47 E-value=0.00026 Score=70.31 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=43.2
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEE
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFI 153 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~i 153 (427)
+.+.||+..+|-++. +.+|+.+.|+|++|+|||||+..++..+... +-.++|.
T Consensus 156 ~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 156 STEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp CTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred Ccccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 468899999999986 8899999999999999999987777766543 3345554
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.0012 Score=57.44 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhh-------cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~-------~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~ 190 (427)
.+..+.|+|+||+|||+|+..++..+.. .+..+++++...... +.. . .......+...+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~---~~~~~~~~~~~~~ 108 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------GAK---Y---RGEFEERLKGVLN 108 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT-------TTC---S---HHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc-------cCC---c---cccHHHHHHHHHH
Confidence 3457899999999999999888887754 244566655321000 000 0 0000111222233
Q ss_pred HHHhcCCccEEEEecccccCC
Q 014268 191 TLIRSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~~ 211 (427)
.+....+..+++||.+..+.+
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 109 DLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGTT
T ss_pred HHhhcCCCeEEEEeCHHHHhc
Confidence 333345567999999999863
No 159
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.43 E-value=0.00054 Score=65.85 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH------HHHHhccccCccccCCCCCHHHHHH-HHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALS-LVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~------~~~~ig~~~~~l~~~~~~~~~~~~~-~~~ 190 (427)
+|+++.|+|++|+||||++.+++..+...++.+++++........ +....++.. +......+..++.. .+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999998888778889888875432211 122223221 10011223334322 223
Q ss_pred HHHhcCCccEEEEeccccc
Q 014268 191 TLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l 209 (427)
.+ ...++++|+||....+
T Consensus 175 ~~-~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 175 KA-RLEARDLILVDTAGRL 192 (295)
T ss_dssp HH-HHHTCCEEEEECCCCS
T ss_pred HH-HhCCCCEEEEeCCCCc
Confidence 22 2246899999987544
No 160
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.43 E-value=0.00013 Score=72.32 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+++|++++|+|++||||||| ++++.+...+..+.+.++..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl-l~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL-MKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH-HHHHHTTSCTTSCEEEEESS
T ss_pred HhcCCEEEEECCCCCCHHHH-HHHHHhcCCCCceEEEECCc
Confidence 45899999999999999999 77777776667778888753
No 161
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.41 E-value=0.00015 Score=71.03 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC------HHHHHHhccccCccccCC---C--CC--
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQ---P--DC-- 181 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~------~~~~~~ig~~~~~l~~~~---~--~~-- 181 (427)
-+.+|.+++|.|+||+|||||+..++..+...++.+.+++...... .....++++.++....+. + .+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccccc
Confidence 3568999999999999999995444444444455666554332110 112345666665433221 1 11
Q ss_pred --HHHHHHHHHHHHhcCCccEEEEecccccC
Q 014268 182 --GEQALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 182 --~~~~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
.....+.+ ..+...+.++++||......
T Consensus 131 G~tr~~~e~~-~~~~~~~~~~iliDT~Gi~~ 160 (337)
T 2qm8_A 131 GVAAKTRETM-LLCEAAGFDVILVETVGVGQ 160 (337)
T ss_dssp HHHHHHHHHH-HHHHHTTCCEEEEEECSSSS
T ss_pred chHHHHHHHH-HHHhcCCCCEEEEECCCCCc
Confidence 12222222 12344678999999987543
No 162
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.40 E-value=0.0011 Score=64.09 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=47.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+..+..-+.|+||||+|||+||..++..+ +...++++.... ..... ...+..+..+-....
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l----~~~~~------------g~~~~~~~~~f~~a~ 107 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----VSKWM------------GESEKLVKQLFAMAR 107 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH----HTTTG------------GGHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH----hhccc------------chHHHHHHHHHHHHH
Confidence 44556679999999999999988887654 445666654211 00000 012222222222334
Q ss_pred cCCccEEEEecccccCC
Q 014268 195 SGSVDVVVVDSVAALVP 211 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~ 211 (427)
...+.+++||.+..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HTSSEEEEEECGGGGSC
T ss_pred hcCCeEEEechhhhhhc
Confidence 45778999999999874
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.36 E-value=0.0018 Score=66.41 Aligned_cols=120 Identities=22% Similarity=0.277 Sum_probs=63.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
-+|+| +.|+||||+|||+||..++... +.+.++++....... ++ ......+...+... .
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~-------------~~--g~~~~~~r~lf~~A-~ 105 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL-------------FV--GVGAARVRDLFAQA-K 105 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC-------------CT--THHHHHHHHHHHHH-H
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH-------------Hh--cccHHHHHHHHHHH-H
Confidence 35556 8899999999999987777654 445666664322110 00 00111222222222 2
Q ss_pred cCCccEEEEecccccCCCCc--cCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 195 SGSVDVVVVDSVAALVPKGE--LDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~--~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
...+.+++||.+..+.+... ..+ +.. ...+.+.+.+..+-..-...++.||+.++....+.
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g--~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGG--GHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HTCSEEEEEETGGGTCCC-----------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcCCCEEEEechhhhhhhcccccCc--CcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 35688999999999864221 111 111 11122333333332211235788888888765543
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.34 E-value=0.00022 Score=64.17 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
++|.+++|.|+||||||||+..++..+ +.+++++.....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~ 65 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHS 65 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEccccccc
Confidence 579999999999999999976665544 457777765443
No 165
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.33 E-value=0.00045 Score=75.22 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++|++++|.||||+|||||+. ++..+
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr-~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMR-QTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHH-HHHHH
T ss_pred CCCcEEEEECCCCCChHHHHH-HHHHH
Confidence 589999999999999999954 44444
No 166
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.33 E-value=0.0011 Score=71.88 Aligned_cols=121 Identities=21% Similarity=0.344 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+.+-.=+.|+||||+|||+||..++..+ +...++++.... . +- .....+..+..+-...+
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l-----~---sk--------~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI-----M---SK--------LAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHH-----H---SS--------CTTHHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHh-----h---cc--------cchHHHHHHHHHHHHHH
Confidence 66666779999999999999988776654 445555553211 0 00 00112222222222234
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcccc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 260 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~ 260 (427)
...+.+|+||.+-.+.+...-.. ++. ..+.+++.+..+-......++.||..+.....+.
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~--~~~----~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTH--GEV----ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCC--CTT----HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HcCCeEEEEehhcccccccCCCC--ChH----HHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 56788999999999886432211 221 1233334444443333445778888877655544
No 167
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.31 E-value=0.0015 Score=72.95 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~i 139 (427)
|++++|.||||+|||||+..+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 899999999999999995555
No 168
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.31 E-value=0.00014 Score=65.93 Aligned_cols=28 Identities=39% Similarity=0.615 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+++|++++|.|||||||||| ++++.++.
T Consensus 17 i~~Gei~~l~GpnGsGKSTL-l~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTV-VRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHH-HHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 77999999999999999999 56666654
No 169
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.29 E-value=0.00084 Score=58.38 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhh-------cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~-------~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~ 191 (427)
+..+.|+|+||+|||+|+..++..+.. .+..+++++... ... +... .......+...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~------~~~~~~~~~~~~~~ 109 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS-----LIA--GAKY------RGDFEERLKSILKE 109 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH-----HHH--HCCS------HHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH-----hhc--CCCc------hhHHHHHHHHHHHH
Confidence 456799999999999999888887754 244555554211 000 0000 00001112222233
Q ss_pred HHhcCCccEEEEecccccCC
Q 014268 192 LIRSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 192 l~~~~~~~lvvIDsl~~l~~ 211 (427)
+.......+++||.+..+.+
T Consensus 110 ~~~~~~~~vl~iDe~~~l~~ 129 (187)
T 2p65_A 110 VQDAEGQVVMFIDEIHTVVG 129 (187)
T ss_dssp HHHTTTSEEEEETTGGGGSS
T ss_pred HHhcCCceEEEEeCHHHhcc
Confidence 33334567999999998863
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.29 E-value=0.0025 Score=56.69 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=41.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcC--ceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh-----
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR----- 194 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~--~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~----- 194 (427)
+.|+|+||+|||+|+..++..+...+ ...+.++..... ....+...+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER---------------------GIDVVRHKIKEFARTAPIG 99 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT---------------------CHHHHHHHHHHHHTSCCST
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc---------------------ChHHHHHHHHHHhcccCCC
Confidence 89999999999999988887764432 234444432211 11222222222221
Q ss_pred cCCccEEEEecccccC
Q 014268 195 SGSVDVVVVDSVAALV 210 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~ 210 (427)
.....+++||.+..+.
T Consensus 100 ~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 100 GAPFKIIFLDEADALT 115 (226)
T ss_dssp TCSCEEEEEETGGGSC
T ss_pred ccCceEEEEeChhhcC
Confidence 2457899999998875
No 171
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.29 E-value=0.00091 Score=63.46 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=27.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
-+++| ++|+||||+|||||+..++... . .+.+++++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~-~--~~~i~i~g~~ 79 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANES-G--LNFISVKGPE 79 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHT-T--CEEEEEETTT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHc-C--CCEEEEEcHH
Confidence 35566 9999999999999966655543 2 2567777653
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00025 Score=63.78 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=32.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.++|.++.|.|+|||||||++..++..+...|..++|+++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 35899999999999999999877777665444445678754
No 173
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.28 E-value=0.00045 Score=69.99 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=34.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.+++|+|+||+||||++.+++..+...+..|++++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999999988888899998764
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.27 E-value=0.0018 Score=65.76 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=60.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 196 (427)
+..+.|+|+||+|||||+..++..+... +..++|++.+.... .+...+. ......+ ...+ ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~~----------~~~~~~~---~~~~--~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMK----------EGKLNEF---REKY--RK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHHH----------TTCHHHH---HHHH--TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHH----------cccHHHH---HHHh--cC
Confidence 5679999999999999987777766543 67788887653211 1111110 0011111 1111 12
Q ss_pred CccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 014268 197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (427)
Q Consensus 197 ~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql 255 (427)
.+++++||.++.+.. .. ..+..+...+ ..+.+.++.||++++.
T Consensus 194 ~~~vL~IDEi~~l~~---------~~---~~q~~l~~~l----~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIG---------KT---GVQTELFHTF----NELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSS---------CH---HHHHHHHHHH----HHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccC---------Ch---HHHHHHHHHH----HHHHHCCCeEEEEECC
Confidence 688999999998863 10 1112222333 3334568888888875
No 175
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.27 E-value=0.0021 Score=63.56 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=19.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
+++| +++|+|+||+||||| +..+.
T Consensus 21 ~~~g-~~~i~G~NGaGKTTl-l~ai~ 44 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSL-FEAIS 44 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHH-HHHHH
T ss_pred cCCC-eEEEECCCCCCHHHH-HHHHH
Confidence 4567 899999999999999 44443
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.25 E-value=0.00028 Score=62.10 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
++|.+++|.|++||||||++..++..+...+.++++++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 6799999999999999999777766554445567777643
No 177
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.25 E-value=0.00063 Score=69.32 Aligned_cols=54 Identities=30% Similarity=0.502 Sum_probs=43.6
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEE
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFI 153 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~i 153 (427)
.+.+.||+..+|.+.. +-+|+.++|+|++|+|||||+..++.+.... +.-++|.
T Consensus 132 ~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 132 VEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp CCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 4578999999999875 6689999999999999999988888876643 3334443
No 178
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.24 E-value=0.0013 Score=64.81 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+..+..-+.|+||||+|||+||..++..+ +...++++... +. + . ++ ... +..+..+-....
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~-----l~---~----~-~~--g~~-~~~~~~~f~~a~ 140 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD-----LV---S----K-WM--GES-EKLVKQLFAMAR 140 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHH-----HH---S----C-C-----C-HHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHH-----Hh---h----h-hc--chH-HHHHHHHHHHHH
Confidence 44555668899999999999988887766 34555554321 10 0 0 00 011 122222222233
Q ss_pred cCCccEEEEecccccCC
Q 014268 195 SGSVDVVVVDSVAALVP 211 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~ 211 (427)
...+.+++||.+..+.+
T Consensus 141 ~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HTSSEEEEEECGGGGTC
T ss_pred HcCCeEEEEechHhhcc
Confidence 45688999999999874
No 179
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.24 E-value=0.00056 Score=74.12 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
|++++|.||||+|||||+ +++..+
T Consensus 576 g~i~~I~GpNGsGKSTlL-r~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFL-RQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHH-HHHHHH
T ss_pred CcEEEEECCCCCChHHHH-HHHHhh
Confidence 899999999999999995 444444
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.22 E-value=0.00073 Score=57.47 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.-+.|.|+||+|||++|..+.......+.+.+ ++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 44899999999999998877665555455655 5543
No 181
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.20 E-value=0.00031 Score=63.62 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
.++|++++|.|+||||||||+..++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999555544443
No 182
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.19 E-value=0.00037 Score=61.69 Aligned_cols=48 Identities=33% Similarity=0.362 Sum_probs=35.1
Q ss_pred hhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 106 ~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.||.-.. .++|.++.|.|.|||||||++..++..+...+..+.+++.+
T Consensus 3 ~~~~~~~---~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 3 ALTTYKC---IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp -----CC---CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccccc---cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 3555443 45789999999999999999888888877667778788643
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.19 E-value=0.0015 Score=62.25 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
+++.-+.|+||||+|||++|..++..+... ...+++++....... ++ ......+ ..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~-------------~~--g~~~~~~----~~~ 125 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQ-------------YI--GHTAPKT----KEV 125 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCS-------------ST--TCHHHHH----HHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhh-------------cc--cccHHHH----HHH
Confidence 456679999999999999998888777543 236777764322110 00 0111122 222
Q ss_pred HhcCCccEEEEecccccCC
Q 014268 193 IRSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~ 211 (427)
+......+++||.+..+..
T Consensus 126 ~~~~~~~vl~iDEid~l~~ 144 (309)
T 3syl_A 126 LKRAMGGVLFIDEAYYLYR 144 (309)
T ss_dssp HHHHTTSEEEEETGGGSCC
T ss_pred HHhcCCCEEEEEChhhhcc
Confidence 2223467999999998863
No 184
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.18 E-value=0.002 Score=65.21 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHH-HHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQAL-SLVD 190 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~-~~~~ 190 (427)
..++.++|++|+||||++.+++..+... |..|++++....... .+....+++.-. .....+..+++ ..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--SDVGQKPVDIVNAALK 177 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--CCSSSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--CCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999887 899999998743321 123333433100 00112334442 2222
Q ss_pred HHHhcCCccEEEEeccccc
Q 014268 191 TLIRSGSVDVVVVDSVAAL 209 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l 209 (427)
.+ ...+.++|+||....+
T Consensus 178 ~~-~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EA-KLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HH-HHTTCSEEEEECCCCC
T ss_pred HH-HhCCCCEEEEECCCcc
Confidence 22 2356899999986543
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.0021 Score=66.58 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHH-HHhccccCccccCCCCCHHHHHHHHH-HHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA-ETIGVKTENLLLAQPDCGEQALSLVD-TLI 193 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~-~~ig~~~~~l~~~~~~~~~~~~~~~~-~l~ 193 (427)
.++...++|+||||+|||++|..++..+ +..+++++.......... ..+.-......+. .++.... .+.
T Consensus 74 ~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~ 144 (516)
T 1sxj_A 74 SGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVV------GYFKHNEEAQN 144 (516)
T ss_dssp TTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCST------TTTTC----CC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHH------HHHhhhhhhhh
Confidence 3456789999999999999988887766 567788876654443221 1111111100000 0000000 111
Q ss_pred hcCCccEEEEecccccCC
Q 014268 194 RSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~ 211 (427)
......+++||.+..+..
T Consensus 145 ~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 145 LNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp SSTTSEEEEECSGGGCCT
T ss_pred ccCCCeEEEEECCCccch
Confidence 234578999999998873
No 186
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.16 E-value=0.00016 Score=76.59 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=74.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCC------CCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA------LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~------~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
++|+|++||||||| ++++.++..+ +.+.+++++... ....+...+|+.+++..+....++.+.+........
T Consensus 48 iaIvG~nGsGKSTL-L~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSV-LEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHH-HHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHH-HHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999 7777777644 455555544321 112344567877776655544444444443322211
Q ss_pred -----------------cCCccEEEEecccccCC-CCccCCcccchhHHHHHHHHHHHHHHHHHH-h-hcCCcEEEEEec
Q 014268 195 -----------------SGSVDVVVVDSVAALVP-KGELDGEMGDAHMAMQARLMSQALRKLSHS-L-SLSQTILIFINQ 254 (427)
Q Consensus 195 -----------------~~~~~lvvIDsl~~l~~-~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~-l-~~~~~tVI~isq 254 (427)
...++++++|-...... ...++. . ... .+..+... + +..++++++++|
T Consensus 127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~--~------~~~----~i~~li~~~l~~~~~iil~vvt~ 194 (608)
T 3szr_A 127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPA--D------IGY----KIKTLIKKYIQRQETISLVVVPS 194 (608)
T ss_dssp CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSC--S------HHH----HHHHHHHHHTTSSSCCEEEEEES
T ss_pred CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCH--H------HHH----HHHHHHHHHHhcCCCCceEEEec
Confidence 12367888887643221 111111 1 111 22233333 2 335788888888
Q ss_pred CCccccccccCCCeeeccCCceeeeecceEEEEEeccccccCc
Q 014268 255 VRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 297 (427)
Q Consensus 255 l~~~v~~~~~~~~~~~~~gG~~ie~~ad~vi~L~r~~~~~~~~ 297 (427)
..+...+. . .... ...-.....+++.+.+.+....+.
T Consensus 195 ~~d~a~~~--~---l~la-~~v~~~g~rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 195 NVDIATTE--A---LSMA-QEVDPEGDRTIGILTKPDLVDKGT 231 (608)
T ss_dssp SSCTTTCH--H---HHHH-HHHCSSCCSEEEEEECGGGSSSSS
T ss_pred cchhccHH--H---HHHH-HHHhhcCCceEEEecchhhcCccc
Confidence 66532210 0 0000 000111246778888887766554
No 187
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.16 E-value=0.00025 Score=64.91 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+++|++++|+|||||||||| ++++.+..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL-l~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL-IKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH-HHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 56999999999999999999 55555554
No 188
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.14 E-value=0.0031 Score=56.76 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=81.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC-CC---HHHHHHhccccCcc----ccCCCC------CHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---PSLAETIGVKTENL----LLAQPD------CGEQA 185 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~-~~---~~~~~~ig~~~~~l----~~~~~~------~~~~~ 185 (427)
.++.|++.+|.||||.|+-++..++..|.+|+++..-.. .. ..+...+++..... .+..+. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 377788888999999999999999999999999965432 11 34455555332211 111111 01222
Q ss_pred HHHHHHHHhcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCccccccccC
Q 014268 186 LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFG 265 (427)
Q Consensus 186 ~~~~~~l~~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~v~~~~~~ 265 (427)
+..+...+..+.+++||+|.+....+...++ . .++ +. +.. .+-.+..||++....
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~-----~------~ev---~~-~l~-~Rp~~~~vIlTGr~a--------- 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP-----L------EEV---IS-ALN-ARPGHQTVIITGRGC--------- 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC-----H------HHH---HH-HHH-TSCTTCEEEEECSSC---------
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC-----H------HHH---HH-HHH-hCcCCCEEEEECCCC---------
Confidence 3344555666889999999997654212111 0 111 22 222 133467888886532
Q ss_pred CCeeeccCCceeeeecceEEEEEec
Q 014268 266 GPTEVTCGGNALKFYASVRLNIKRI 290 (427)
Q Consensus 266 ~~~~~~~gG~~ie~~ad~vi~L~r~ 290 (427)
|. .+-..||.|-.|...
T Consensus 164 -p~-------~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 164 -HR-------DILDLADTVSELRPV 180 (196)
T ss_dssp -CH-------HHHHHCSEEEECCCS
T ss_pred -cH-------HHHHhCcceeeecce
Confidence 21 466788998777654
No 189
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.13 E-value=0.00073 Score=61.03 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
..+.|.|+||+|||||+..++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999998888776643
No 190
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.12 E-value=0.00028 Score=63.15 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+++|++++|.||||||||||+.. +.+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~-L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRA-LVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHH-HHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHH-HHhhC
Confidence 45899999999999999999544 44443
No 191
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.12 E-value=0.0015 Score=64.71 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCEEEE--EcCCCCCHHHHHHHHHHHhhhc------CceEEEEeCCCCCC-H----HHHHHhccccCccccCCCCCHHH
Q 014268 118 KGRVVEI--YGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALD-P----SLAETIGVKTENLLLAQPDCGEQ 184 (427)
Q Consensus 118 ~G~li~I--~G~pGsGKTTLal~ia~~~~~~------~~~vv~is~E~~~~-~----~~~~~ig~~~~~l~~~~~~~~~~ 184 (427)
.+..+.| +|++|+|||+|+..++..+... +..++|++...... . .+...+|.... ....+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence 3557888 9999999999988888776542 45688888643333 1 23334443211 01223455
Q ss_pred HHHHHHHHHh-cCCccEEEEecccccC
Q 014268 185 ALSLVDTLIR-SGSVDVVVVDSVAALV 210 (427)
Q Consensus 185 ~~~~~~~l~~-~~~~~lvvIDsl~~l~ 210 (427)
++..+...+. ..+.-+++||.++.+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 5555444443 3457799999999875
No 192
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.11 E-value=0.00049 Score=66.49 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=29.0
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+.|+.+.- .+++|++++|+||||+||||| ++++.++.
T Consensus 114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTL-l~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLK--GIPKKNCLAFIGPPNTGKSML-CNSLIHFL 150 (305)
T ss_dssp HHHHHHHH--TCTTCSEEEEECSSSSSHHHH-HHHHHHHH
T ss_pred hhhccceE--EecCCCEEEEECCCCCcHHHH-HHHHhhhc
Confidence 34555554 799999999999999999999 55555555
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.10 E-value=0.00047 Score=62.08 Aligned_cols=41 Identities=29% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.++|.+++|.|++|||||||+..++..+...++.+++++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 45789999999999999999777766655556667776544
No 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.08 E-value=0.00034 Score=61.88 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
|-.+|++++|+||||||||||+..++..
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4467999999999999999996555544
No 195
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.06 E-value=0.00071 Score=66.51 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhc--------CceEEEEeCCCCC-CH-----HHHHHh-ccccCccccCCCCCHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL-DP-----SLAETI-GVKTENLLLAQPDCGE 183 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~--------~~~vv~is~E~~~-~~-----~~~~~i-g~~~~~l~~~~~~~~~ 183 (427)
+..+.|+|+||+|||+|+..++..+... +..+++++..... .. .+...+ |..... ...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK----HGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS----SSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC----CCCCHH
Confidence 4589999999999999998888877543 6678888754332 21 122222 222111 112234
Q ss_pred HHHHHHHHHHhcCCccEEEEecccccC
Q 014268 184 QALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 184 ~~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
+++..+...+...+. +++||.++.+.
T Consensus 121 ~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 121 EYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 445555544444444 99999998875
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.06 E-value=0.00033 Score=64.35 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
-+++|++++|.|||||||||| ++++.+..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL-lk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL-IQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH-HHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHH-HHHHhccCC
Confidence 578999999999999999999 555555544
No 197
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.05 E-value=0.0021 Score=70.26 Aligned_cols=118 Identities=21% Similarity=0.382 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHH-HHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDTLI 193 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~-~~~~~~~l~ 193 (427)
|++++..++|+||||+||||||..++..+ +...+++++..... . ....... +...+.. .
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~~--------~--------~~g~~~~~l~~vf~~-a 293 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS--------K--------LAGESESNLRKAFEE-A 293 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHSS--------S--------STTHHHHHHHHHHHH-H
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhhh--------h--------hhhhHHHHHHHHHHH-H
Confidence 68899999999999999999977765543 33455665421110 0 0001111 1112222 2
Q ss_pred hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHh-hcCCcEEEEEecCCccc
Q 014268 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL-SLSQTILIFINQVRAKL 259 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l-~~~~~tVI~isql~~~v 259 (427)
....+.++++|.+..+.+...... ++ .. +.+...+..+.... ...++.||+.++....+
T Consensus 294 ~~~~p~il~iDEid~l~~~~~~~~--~~----~~-~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 294 EKNAPAIIFIDELDAIAPKREKTH--GE----VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHCSEEEEEESGGGTSCTTSCCC--SH----HH-HHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HhcCCcEEEeccHHHhhhcccccc--ch----HH-HHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 234578999999988875322111 11 11 22222233332222 23567888887765444
No 198
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.05 E-value=0.0002 Score=67.97 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE 172 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~ 172 (427)
.++|+||||+||||| ++++.+...+..+.++++++........+.+++.++
T Consensus 4 ~v~lvG~nGaGKSTL-ln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q 54 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL-VNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIE 54 (270)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHC------------CCCCCSCCEEEESCC
T ss_pred EEEEECCCCCCHHHH-HHHHhCCCCCCCCccccCCcccCcceeeeeeEEEee
Confidence 478999999999999 777777776666667776654322222234455444
No 199
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.04 E-value=0.0022 Score=59.57 Aligned_cols=36 Identities=39% Similarity=0.483 Sum_probs=26.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++| +.|+||||+|||||+..++... +.+.++++.
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeH
Confidence 45667 9999999999999966665544 245666654
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.04 E-value=0.0051 Score=62.38 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
+..+..-++|+||||+|||+||..++..+ .+...++++...... ...|. .......++..+ .
T Consensus 163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~----~~~g~--------~~~~~~~~f~~a----~ 224 (444)
T 2zan_A 163 KRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVS----KWLGE--------SEKLVKNLFQLA----R 224 (444)
T ss_dssp GGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------------------CCCTHHHHHHHH----H
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHh----hhcch--------HHHHHHHHHHHH----H
Confidence 45666789999999999999988887765 234566666543211 11111 111233333332 2
Q ss_pred cCCccEEEEecccccCC
Q 014268 195 SGSVDVVVVDSVAALVP 211 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~ 211 (427)
...+.+|+||.+..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp HSCSEEEEESCTTTTCC
T ss_pred HcCCeEEEEechHhhcc
Confidence 35688999999998864
No 201
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00028 Score=72.07 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce-E-EEEeC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-C-VFIDA 155 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~-v-v~is~ 155 (427)
+++|++++|.|||||||||| ++++.++..+..+ . +++++
T Consensus 135 i~~Ge~v~IvGpnGsGKSTL-lr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSL-SRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHH-HHHHHHTTHHHHCCCCEEEEC
T ss_pred eCCCCEEEEECCCCCCHHHH-HHHHhCcccccCCceeEEEcC
Confidence 56999999999999999999 6777777655444 4 77776
No 202
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.00 E-value=0.0021 Score=65.81 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=40.3
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
.+.+.||+..+|.++. +-+|+-..|.|++|+|||+||+.++.+...
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 143 REPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred Cccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 4568999999999996 679999999999999999998877776655
No 203
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.99 E-value=0.003 Score=64.32 Aligned_cols=53 Identities=30% Similarity=0.582 Sum_probs=44.4
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEE
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVF 152 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~ 152 (427)
.+.+.||+..+|.++. +-+|+-+.|.|++|+|||+|+..++.+.++. +.-++|
T Consensus 134 ~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~ 187 (482)
T 2ck3_D 134 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 187 (482)
T ss_dssp CCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEE
T ss_pred CcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEE
Confidence 5689999999999986 6699999999999999999998998887654 233444
No 204
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.99 E-value=0.0016 Score=66.61 Aligned_cols=55 Identities=29% Similarity=0.535 Sum_probs=45.3
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
.+.+.||+..+|.++. +-+|+-..|.|++|+|||+|++.++.+....+..++|.-
T Consensus 156 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~ 210 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVA 210 (515)
T ss_dssp CSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEE
T ss_pred CcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEE
Confidence 4568999999999986 669999999999999999999888877765554456543
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.99 E-value=0.007 Score=60.07 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 196 (427)
.++.-++|+|+||+|||+||..++... +..+++++........ .| .. +..+..+.......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~----~g-----------~~-~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY----VG-----------EG-EKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc----cc-----------hH-HHHHHHHHHHHHhc
Confidence 346789999999999999988876543 5567777664332210 00 01 11222222223345
Q ss_pred CccEEEEecccccCC
Q 014268 197 SVDVVVVDSVAALVP 211 (427)
Q Consensus 197 ~~~lvvIDsl~~l~~ 211 (427)
.+.+++||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 678999999998864
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.99 E-value=0.00045 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++|.+++|.|+|||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999966555443
No 207
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.98 E-value=0.0019 Score=66.13 Aligned_cols=55 Identities=27% Similarity=0.458 Sum_probs=45.5
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
.+.+.||+..+|.++. +-+|+-..|.|++|+|||+|++.++.+....+..++|.-
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~ 197 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVA 197 (502)
T ss_dssp CSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEE
T ss_pred CCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEE
Confidence 4568999999999986 669999999999999999999988887765544456543
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.97 E-value=0.0042 Score=63.92 Aligned_cols=119 Identities=21% Similarity=0.384 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~ 194 (427)
|+++..-+.|+|+||+|||+||..++... +...++++..... ..+ + ......+...+.. ..
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~------------~~~-~--g~~~~~~~~~f~~-A~ 294 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM------------SKL-A--GESESNLRKAFEE-AE 294 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHH------------TSC-T--THHHHHHHHHHHH-HH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhh------------hhh-c--chhHHHHHHHHHH-HH
Confidence 45666779999999999999988776554 4567776642110 000 0 0011111122222 23
Q ss_pred cCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 195 ~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
...+.+++||.+..+.+...-.. ++ ...+.....++.|...-...++.||+.++....
T Consensus 295 ~~~p~iLfLDEId~l~~~~~~~~--~~----~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 295 KNAPAIIFIDELDAIAPKREKTH--GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HTCSEEEEEESHHHHCBCTTSCC--CH----HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred hcCCcEEEecchhhhcccccccc--ch----HHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 45678999999998875322111 11 111222333333332223346667777665443
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.96 E-value=0.00053 Score=59.85 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
.+|.+++|.|+|||||||++..++..+ +..++++....
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCcccc
Confidence 468999999999999999976665543 35677765543
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.96 E-value=0.0047 Score=63.67 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH------HHHHHhccccCccccCCCCCHHHHH-HHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQAL-SLVD 190 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~------~~~~~ig~~~~~l~~~~~~~~~~~~-~~~~ 190 (427)
+..++.|+|+||+||||++.+++..+...+..+++++....... .+..+.+++.-. ........++. ..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~--~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG--SYTEMDPVIIASEGVE 177 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEE--CCCCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEc--cCCCCCHHHHHHHHHH
Confidence 35589999999999999999999988877888999887532221 122333333111 01112233332 2222
Q ss_pred HHHhcCCccEEEEecccccC
Q 014268 191 TLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~~~~~~lvvIDsl~~l~ 210 (427)
.+ ...+.++++||....+.
T Consensus 178 ~~-~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 178 KF-KNENFEIIIVDTSGRHK 196 (504)
T ss_dssp HH-HHTTCCEEEEEECCCCT
T ss_pred HH-HHCCCcEEEEeCCCCcc
Confidence 22 23568999999877654
No 211
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.96 E-value=0.0021 Score=65.70 Aligned_cols=55 Identities=29% Similarity=0.466 Sum_probs=45.3
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
.+.+.||+..+|.++. +-+|+-..|.|++|+|||+|++.++.+....+..|+|.-
T Consensus 143 ~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~ 197 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVA 197 (513)
T ss_dssp CCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEE
T ss_pred Ccccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEE
Confidence 4678999999999996 669999999999999999998888777654444566653
No 212
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.95 E-value=0.0037 Score=60.22 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC------C-HH----HHHHhcc------------ccCccc
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------D-PS----LAETIGV------------KTENLL 175 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~------~-~~----~~~~ig~------------~~~~l~ 175 (427)
|.+++|.|++|+|||+|+.+++... +++|++..... . .. +.+.++- ......
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 4799999999999999988877654 27888764321 1 11 1121110 000000
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCCccEEEEecccccC
Q 014268 176 LA-QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 176 ~~-~~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
.. ......+++..+..+....+.-+++||.++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 00 123456666666554443336789999999876
No 213
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.94 E-value=0.00081 Score=65.17 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
+++|++++|+|+||||||||+ +++.++..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~-~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA-RVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH-HHHHhhcc
Confidence 679999999999999999995 45555544
No 214
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.94 E-value=0.0059 Score=59.68 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
|..+|..+.|+||||+|||+||..++..+.. ..+.+.++
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~~~~~~ 104 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DTPFTAIA 104 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cCCccccc
Confidence 6667889999999999999998888877642 23444444
No 215
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.93 E-value=0.0033 Score=64.25 Aligned_cols=59 Identities=24% Similarity=0.453 Sum_probs=47.1
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEE-eCCCC
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFI-DAEHA 158 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~i-s~E~~ 158 (427)
.+.+.||+..+|.++. +-+|+-+.|+|++|+|||+|+..++.+.++. +.-++|. -+|..
T Consensus 146 ~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~ 206 (498)
T 1fx0_B 146 LSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERT 206 (498)
T ss_dssp CCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCS
T ss_pred ccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCc
Confidence 5678999999999986 7799999999999999999999999887653 3345554 34433
No 216
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.93 E-value=0.0047 Score=59.78 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=19.6
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
+.+| +++|+|+||+||||| +..+.
T Consensus 22 ~~~g-~~~i~G~NGsGKS~l-l~ai~ 45 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNI-IDAIK 45 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHH-HHHHH
T ss_pred cCCC-cEEEECCCCCcHHHH-HHHHH
Confidence 4577 999999999999999 44444
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.92 E-value=0.00072 Score=60.92 Aligned_cols=36 Identities=39% Similarity=0.487 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
++|.+++|.|++|||||||+ +++.+...+ .+.|++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~-~~l~~~~~~--~i~~v~~ 39 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLA-QALARTLGE--RVALLPM 39 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHH-HHHHHHHGG--GEEEEEG
T ss_pred CCcEEEEEECCCCCCHHHHH-HHHHHHhCC--CeEEEec
Confidence 57899999999999999995 444444322 3455543
No 218
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.92 E-value=0.0013 Score=67.38 Aligned_cols=111 Identities=19% Similarity=0.304 Sum_probs=67.8
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe-CCCCCC-HHHHHHh---cccc
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AEHALD-PSLAETI---GVKT 171 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is-~E~~~~-~~~~~~i---g~~~ 171 (427)
.+.+.||+..+|.++. +-+|+-..|.|++|+|||+|++.++.+....+..++|.- +|...+ ..+.+.+ |...
T Consensus 144 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 220 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAME 220 (507)
T ss_dssp CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGG
T ss_pred CCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccc
Confidence 4568999999999986 669999999999999999999888877765554556653 333222 1222221 1110
Q ss_pred CccccC-C--------CCCHHHHHHHHHHHHhcCCccEEEEecccccC
Q 014268 172 ENLLLA-Q--------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 210 (427)
Q Consensus 172 ~~l~~~-~--------~~~~~~~~~~~~~l~~~~~~~lvvIDsl~~l~ 210 (427)
.-+.+. . .....-.+...+.+...+.--++++|++..+.
T Consensus 221 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 221 YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 111111 1 11122334445555455566688899987654
No 219
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.89 E-value=0.0006 Score=61.91 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=35.8
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.-+.. +..|-..+. |+|+...++|+||||+||||+|+.++..+
T Consensus 39 ~~~~~f-~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 39 IEFITF-LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CCHHHH-HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCHHHH-HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444 567777887 89998889999999999999998887765
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.89 E-value=0.003 Score=56.28 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=53.7
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCcc
Q 014268 121 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (427)
Q Consensus 121 li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (427)
++.|+ +..|+||||++.+++..++..|.+|+++|...... ....++....++.+..... ..+...+..+. ...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 45555 66899999999999999999899999999873322 2222232223333322222 44555555542 3589
Q ss_pred EEEEeccccc
Q 014268 200 VVVVDSVAAL 209 (427)
Q Consensus 200 lvvIDsl~~l 209 (427)
+|+||....+
T Consensus 78 ~viiD~~~~~ 87 (206)
T 4dzz_A 78 FAIVDGAGSL 87 (206)
T ss_dssp EEEEECCSSS
T ss_pred EEEEECCCCC
Confidence 9999986544
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00045 Score=62.14 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=19.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
++|++++|+||||+||||| ++++.+..
T Consensus 2 ~~g~~i~lvGpsGaGKSTL-l~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTL-LKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 5789999999999999999 55555544
No 222
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.84 E-value=0.0061 Score=59.87 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 197 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 197 (427)
+..-+.|+|+||+|||+||..++..+ +...++++....... + .......+..+-.......
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--------------~--~g~~~~~~~~~~~~a~~~~ 176 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--------------W--VGEGEKMVRALFAVARCQQ 176 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS--------------S--TTHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc--------------c--cchHHHHHHHHHHHHHhcC
Confidence 45679999999999999988876654 456677765322110 0 0011222222222233456
Q ss_pred ccEEEEecccccCC
Q 014268 198 VDVVVVDSVAALVP 211 (427)
Q Consensus 198 ~~lvvIDsl~~l~~ 211 (427)
+.+++||.+..+.+
T Consensus 177 ~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 177 PAVIFIDEIDSLLS 190 (357)
T ss_dssp SEEEEEETHHHHTB
T ss_pred CeEEEEeCchhhhc
Confidence 78999999998864
No 223
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00076 Score=59.55 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
|++++.+++|.|+|||||||++..++..+
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56788999999999999999988877654
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.83 E-value=0.00077 Score=59.68 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
|++++|.|+||||||||+..++. +..+.++++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~~d 35 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA----QLDNSAYIEGD 35 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH----HSSSEEEEEHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc----ccCCeEEEccc
Confidence 67999999999999999666643 23455677654
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.0039 Score=58.79 Aligned_cols=36 Identities=42% Similarity=0.536 Sum_probs=26.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
-+++| +.|+||||+|||||+..++..+ . .+.++++.
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~-~--~~~i~~~~ 106 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA-R--VPFITASG 106 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT-T--CCEEEEEH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc-C--CCEEEecH
Confidence 45667 8999999999999966665544 2 45666654
No 226
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.81 E-value=0.0031 Score=62.59 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=43.3
Q ss_pred CccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc--CceEEEE
Q 014268 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFI 153 (427)
Q Consensus 98 ~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~--~~~vv~i 153 (427)
+.+.||+..+|.++. +-+|+-..|.|++|+|||+|+..++.++... +-.|+|.
T Consensus 157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~ 211 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIIL 211 (427)
T ss_dssp STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEE
Confidence 467999999999986 6699999999999999999988888877643 3345554
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.79 E-value=0.0025 Score=61.08 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCccccCchhhHHh---hc-CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 97 VPVVSTGSFALDIA---LG-TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 97 ~~~l~TG~~~LD~~---l~-~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
...||||-.....+ +. ...-.++.++.|+|..|+||||++.+++..++..|.+|+.+|...
T Consensus 15 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 15 DLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp -------------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cccCCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44566665544332 21 011235678999999999999999999999999899999998874
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.79 E-value=0.00082 Score=60.84 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++|.+++|.||||+|||||+..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999976665543
No 229
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.77 E-value=0.00083 Score=62.39 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
-+++|.+++|.|++|||||||+..++..+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999965554433
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.77 E-value=0.0013 Score=59.54 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA 155 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~ 155 (427)
+++|.++.|.|+|||||||++..++..+. ..|..+++++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 66899999999999999999888777665 34545888874
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.77 E-value=0.0056 Score=59.48 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
+.|+||||+||||++..++..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999998888777654
No 232
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.0015 Score=55.39 Aligned_cols=21 Identities=24% Similarity=0.037 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
-+.|.|+||+|||++|..+..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCC
T ss_pred cEEEECCCCccHHHHHHHHHH
Confidence 488999999999999765543
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.001 Score=59.59 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++|.+++|.|+|||||||++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5589999999999999999988877655
No 234
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.72 E-value=0.0017 Score=57.99 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
..+.|+|+||+|||+||..++..+...+..++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 5789999999999999888888887777788888653
No 235
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.70 E-value=0.0061 Score=57.18 Aligned_cols=36 Identities=31% Similarity=0.217 Sum_probs=27.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
.++..-+.|+||||+|||+||..++... +.+.++++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 3455578999999999999988887763 44555554
No 236
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.68 E-value=0.00051 Score=63.11 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=17.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia 140 (427)
+++|++++|.||||||||||+..++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999955444
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.67 E-value=0.0055 Score=63.14 Aligned_cols=37 Identities=38% Similarity=0.472 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
-+++| +.|+||||+|||+|+..++..+ +.+.+++++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~ 98 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGS 98 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 45667 9999999999999977666544 3567777764
No 238
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.67 E-value=0.00081 Score=68.93 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
-+++ ++++|.|||||||||| ++++.++..+..+.+++++..
T Consensus 26 ~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTT-MAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHH-HHHHHHHHCCCTTTCCCCCTT
T ss_pred EEcc-ceEEEECCCCCcHHHH-HHHHhcCCCCCCCEEEECCEE
Confidence 3678 9999999999999999 777777777666666666553
No 239
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.002 Score=60.48 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
++.+++|.|.|||||||++..++..+...+..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46799999999999999998888876555666666664
No 240
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.59 E-value=0.014 Score=60.24 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=30.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc---C-ceEEEEeCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---G-GYCVFIDAEH 157 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~---~-~~vv~is~E~ 157 (427)
+.++..++|+|.+|||||+++..++..++.. + -.++.+|..+
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4567889999999999999977777766432 2 2355567654
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.58 E-value=0.0013 Score=58.30 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
|++++|.||||||||||+ +++.+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~-~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL-KKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHH-HHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhCC
Confidence 578999999999999995 55554443
No 242
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.58 E-value=0.0064 Score=59.02 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhh--cCceEEEEeCCC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH 157 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~--~~~~vv~is~E~ 157 (427)
+++|+|++|||||||+..+...+.. .++.+.+++...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 9999999999999996655544432 244577776654
No 243
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0085 Score=58.08 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhc-------CceEEEEeCCCCCCH-----HHHHHhccccCccccCCCCCHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQA 185 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~-------~~~vv~is~E~~~~~-----~~~~~ig~~~~~l~~~~~~~~~~~ 185 (427)
++..+.|+|+||+|||+++..++..+... .-.++++++....+. .+++.+.- .+ .......+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g--~~--~~~~~~~~~L 119 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK--EN--LCGDISLEAL 119 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC--CC----CCCCHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC--CC--CCchHHHHHH
Confidence 56678999999999999999998887532 235778886554331 23344421 11 1111223333
Q ss_pred HHHHHHHH-hcCCccEEEEecccccC
Q 014268 186 LSLVDTLI-RSGSVDVVVVDSVAALV 210 (427)
Q Consensus 186 ~~~~~~l~-~~~~~~lvvIDsl~~l~ 210 (427)
...+..+. .....-++++|.+..+.
T Consensus 120 ~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 120 NFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHhhhccCCceEEEEecHHHhh
Confidence 23333221 23456788999988775
No 244
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.03 Score=53.97 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=33.4
Q ss_pred cCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh---cCceEEEEeCC
Q 014268 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAE 156 (427)
Q Consensus 102 TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~---~~~~vv~is~E 156 (427)
.-+..|-..+. .|-.+. +.|+||||+||||++..++..+.. ....++.++..
T Consensus 44 ~~~~~l~~~l~-~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 44 HAVTVLKKTLK-SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp TTHHHHHHHTT-CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHHh-cCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 33455655554 232222 899999999999998888877642 22345556543
No 245
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.54 E-value=0.0024 Score=56.09 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
+++|.|+|||||||++..++..+...+..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999888887755555566664
No 246
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.52 E-value=0.0023 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
|.+++|.|+|||||||++..++..+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 579999999999999998888776643
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.51 E-value=0.0017 Score=67.24 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+++|..++|+|++||||||| ++++.++..+..+++.+...
T Consensus 257 v~~g~~i~I~GptGSGKTTl-L~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT-LNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH-HHHHGGGSCTTCCEEEEESS
T ss_pred HhCCCEEEEECCCCCCHHHH-HHHHHhhCCCCCCEEEEcCc
Confidence 35899999999999999999 66677777777777777543
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.49 E-value=0.0096 Score=55.51 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
.-+.|+|+||+|||+||..++......+.+.++++....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 458899999999999988777766555667888876544
No 249
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.48 E-value=0.00073 Score=66.68 Aligned_cols=45 Identities=29% Similarity=0.284 Sum_probs=30.6
Q ss_pred cCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEE
Q 014268 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFI 153 (427)
Q Consensus 102 TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~i 153 (427)
.|+..|...+ +|++++|+|+||+||||| ++++.+... ...+.+.+
T Consensus 204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTL-ln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 204 DGLKPLEEAL------TGRISIFAGQSGVGKSSL-LNALLGLQNEILTNDVSN 249 (358)
T ss_dssp BTHHHHHHHH------TTSEEEEECCTTSSHHHH-HHHHHCCSSCCCCC----
T ss_pred cCHHHHHHhc------CCCEEEEECCCCccHHHH-HHHHhccccccccCCccc
Confidence 4667776655 578999999999999999 666666554 43343433
No 250
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.0036 Score=67.96 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH
Q 014268 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (427)
Q Consensus 114 GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~ 193 (427)
.|+.+..=++|+||||+|||.||..++..+. ...+.++.- ..+...+| .+...+...+ ...
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~~f~~v~~~----~l~s~~vG-----------ese~~vr~lF-~~A 566 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP----ELLTMWFG-----------ESEANVREIF-DKA 566 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---CEEEECCHH----HHHTTTCS-----------SCHHHHHHHH-HHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC---CceEEeccc----hhhccccc-----------hHHHHHHHHH-HHH
Confidence 4677666789999999999999888877652 233333211 11111111 1222222222 223
Q ss_pred hcCCccEEEEecccccCCCCccCCcccchhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEecCCcc
Q 014268 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 258 (427)
Q Consensus 194 ~~~~~~lvvIDsl~~l~~~~~~~~~~g~~~~~~~ar~ls~~L~~L~~~l~~~~~tVI~isql~~~ 258 (427)
+...+.+++||.+..+.+...... +.. .+...|.+++.|..|-..-...++.||..+.....
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~--~~~-~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNI--GDG-GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred HHcCCceeechhhhHHhhccCCCC--CCC-chHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 445688999999999875321110 000 01112344555555543323345555555544433
No 251
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.45 E-value=0.01 Score=58.25 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=33.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
+.-+++|+|.||+|||||+.+++..+...+..++.++...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 4558999999999999999999988887788888887653
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.43 E-value=0.0025 Score=64.26 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhc-CceEEEEe
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 154 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~-~~~vv~is 154 (427)
.+|.+++|+||+||||||| ++++.+...+ .+.++++.
T Consensus 165 ~~ggii~I~GpnGSGKTTl-L~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTT-LYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SSSEEEEEECSTTSCHHHH-HHHHHHHHCCTTSCEEEEE
T ss_pred hcCCeEEEECCCCCCHHHH-HHHHHhhcCCCCCEEEEec
Confidence 5899999999999999999 5555555544 44455543
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.41 E-value=0.0017 Score=56.25 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.|.+++|.|+|||||||++..++..+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999966555443
No 254
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.41 E-value=0.0031 Score=56.33 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
+|.+++|.|+|||||||++..++..+...+ .++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 467999999999999999988887765444 45443
No 255
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.41 E-value=0.0018 Score=58.15 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
-+++|.+++|.|+||||||||+..++..+. ++.+++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D 54 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQD 54 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCC
Confidence 567899999999999999999665544321 35566554
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0018 Score=58.26 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.+|.+++|+|+||||||||+..++..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999987776654
No 257
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.39 E-value=0.019 Score=55.94 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=40.5
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+.|+.++. . +.-.++++.|..|+||||++.+++..++..|.+|+.+|..
T Consensus 5 ~~l~~~l~--~-~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 5 PTLQSILD--Q-RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp SSSHHHHH--C-TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred ccHHHHhc--C-CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34566665 1 1246889999999999999999999999999999999987
No 258
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.026 Score=53.61 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=42.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcC--ceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh-----
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR----- 194 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~--~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~----- 194 (427)
+.|+|+||+|||+++..++..+...+ ..+++++.... .....+.+.+..+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~i~~~~~~~~~~~~~~ 103 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD---------------------RGIDVVRNQIKHFAQKKLHL 103 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC---------------------CSHHHHHTHHHHHHHBCCCC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc---------------------cChHHHHHHHHHHHhccccC
Confidence 89999999999999998888764322 23555543321 112333333333221
Q ss_pred -cCCccEEEEecccccC
Q 014268 195 -SGSVDVVVVDSVAALV 210 (427)
Q Consensus 195 -~~~~~lvvIDsl~~l~ 210 (427)
.++..+++||.+..+.
T Consensus 104 ~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 104 PPGKHKIVILDEADSMT 120 (323)
T ss_dssp CTTCCEEEEEESGGGSC
T ss_pred CCCCceEEEEECcccCC
Confidence 2347899999988875
No 259
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.36 E-value=0.012 Score=56.87 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.++++.|..|+||||+|.+++..++..|.+|+.+|...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 68888899999999999999999999999999999875
No 260
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.36 E-value=0.015 Score=57.40 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCCEEEEEc-CCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 117 PKGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 117 ~~G~li~I~G-~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.++.++.|++ ..|+||||++.+++..++..|.+|+++|..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3567888876 799999999999999999888999999987
No 261
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.35 E-value=0.007 Score=63.23 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=57.4
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh---h-hcCceEEEEeCCCCCCHHH-------HHHhccccCc
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA---Q-RQGGYCVFIDAEHALDPSL-------AETIGVKTEN 173 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~---~-~~~~~vv~is~E~~~~~~~-------~~~ig~~~~~ 173 (427)
..|...+. .+-....++.|.|++|+||||||..++... . ....+++|++......... +..++.. ..
T Consensus 134 ~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~-~~ 211 (591)
T 1z6t_A 134 NAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD-ES 211 (591)
T ss_dssp HHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSS-CC
T ss_pred HHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccc-cc
Confidence 44555554 122346799999999999999998887543 1 1234688887654322111 1122210 00
Q ss_pred cccCCCCCHHHHHHHHHHHHhcC-CccEEEEeccc
Q 014268 174 LLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVA 207 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~l~~~~-~~~lvvIDsl~ 207 (427)
..-..+.+.+.....+...+... +.-++|+|.+.
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 212 FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 11122345666666666655442 46789999874
No 262
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.34 E-value=0.035 Score=53.20 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=42.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh----c
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR----S 195 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~----~ 195 (427)
.++.+.||||+|||+++..++..+ +..+++++..... ...+...+..... .
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~----------------------~~~i~~~~~~~~~~~~~~ 103 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK----------------------IDFVRGPLTNFASAASFD 103 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC----------------------HHHHHTHHHHHHHBCCCS
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC----------------------HHHHHHHHHHHHhhcccC
Confidence 578899999999999988876655 4567777753211 2222222222221 2
Q ss_pred CCccEEEEecccccC
Q 014268 196 GSVDVVVVDSVAALV 210 (427)
Q Consensus 196 ~~~~lvvIDsl~~l~ 210 (427)
+..++++||.+..+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999998875
No 263
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.33 E-value=0.0043 Score=57.10 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEE
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv 151 (427)
.+.+|.+++|.|+|||||||++..++..+.. +..++
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 5668999999999999999998777777655 54554
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.33 E-value=0.0035 Score=59.82 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
.++.+++|+|+|||||||++..++... +...+++|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 357899999999999999988876654 235677775
No 265
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.32 E-value=0.003 Score=62.82 Aligned_cols=27 Identities=44% Similarity=0.583 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
++++|++++|.||||+|||||+..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999999666654
No 266
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.32 E-value=0.0022 Score=58.98 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=22.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
..++|.+++|.|++|||||||+ +++.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~-~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYL-NHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHH-HTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHH-HHHHhc
Confidence 4578999999999999999994 444443
No 267
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.31 E-value=0.014 Score=60.62 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHH----HhhhcCceEEEEeCCCCC--C-----HHHHHHhccccC--ccccCCCCCHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIA----EAQRQGGYCVFIDAEHAL--D-----PSLAETIGVKTE--NLLLAQPDCGEQ 184 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~----~~~~~~~~vv~is~E~~~--~-----~~~~~~ig~~~~--~l~~~~~~~~~~ 184 (427)
...++.|.|.+|+||||||.+++. .+...-..++|++..... + ..+...++.... .+.-....+..+
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 457999999999999999998885 233333568888765543 2 233444554321 111111223455
Q ss_pred HHHHHHHHHhcCCccEEEEecccc
Q 014268 185 ALSLVDTLIRSGSVDVVVVDSVAA 208 (427)
Q Consensus 185 ~~~~~~~l~~~~~~~lvvIDsl~~ 208 (427)
+...+...+...+.-++|+|.+..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC
Confidence 566666665543356899998765
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.30 E-value=0.00091 Score=73.10 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCC-CCHHHHHHHHHHH
Q 014268 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQP-DCGEQALSLVDTL 192 (427)
Q Consensus 114 GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~-~~~~~~~~~~~~l 192 (427)
-|++++..++|+||||+|||+||..++..+ +.+.++++....... ++... .....++..++
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~-------------~~g~~~~~i~~~f~~a~-- 567 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-------------WFGESEANVREIFDKAR-- 567 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC-------------CTTTSSHHHHHHHHHHH--
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh-------------hcCccHHHHHHHHHHHH--
Confidence 367889999999999999999988877765 233444443322110 11111 11122222222
Q ss_pred HhcCCccEEEEecccccCC
Q 014268 193 IRSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~ 211 (427)
...+.++++|.+..+.+
T Consensus 568 --~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 568 --QAAPCVLFFDELDSIAK 584 (806)
T ss_dssp --HHCSBCCCCSSHHHHCC
T ss_pred --hcCCeEEEEEChhhhhh
Confidence 33467899999988864
No 269
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.30 E-value=0.0048 Score=54.21 Aligned_cols=37 Identities=32% Similarity=0.321 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.++.|+|++|||||||+..++..+...+..+..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3789999999999999999888887666677666643
No 270
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.29 E-value=0.009 Score=55.57 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 118 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 118 ~G~li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
++.++.|+ +..|+||||++.+++..++..|.+|+++|...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45677776 56899999999999999998899999999875
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.0047 Score=55.36 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
.+|.+++|.|++||||||++..++..+...+-.+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3678999999999999999988887765545455433
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.27 E-value=0.0023 Score=56.19 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+|.+++|.|+|||||||++..++..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999988776654
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.26 E-value=0.0028 Score=55.20 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.+++|.|+|||||||++..++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999988777655
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.23 E-value=0.003 Score=58.45 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.+++|.|+||||||||+..++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999976666443
No 275
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.23 E-value=0.0023 Score=61.51 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=35.8
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE---eCCCCCC-H-HH-HHHhccccCccc
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI---DAEHALD-P-SL-AETIGVKTENLL 175 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i---s~E~~~~-~-~~-~~~ig~~~~~l~ 175 (427)
+|.++. +..|++++|.|+||+||||| ++++. ...+..+.+.+ .+.+... . .. ...+|+.++...
T Consensus 156 i~~L~~---~l~G~i~~l~G~sG~GKSTL-ln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 156 IDELVD---YLEGFICILAGPSGVGKSSI-LSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp HHHHHH---HTTTCEEEEECSTTSSHHHH-HHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCC
T ss_pred HHHHHh---hccCcEEEEECCCCCCHHHH-HHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 444443 44689999999999999999 55555 55554455555 3433322 1 11 124676666543
No 276
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=96.22 E-value=0.0012 Score=64.69 Aligned_cols=38 Identities=39% Similarity=0.474 Sum_probs=34.4
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHH
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL 137 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal 137 (427)
-.-++||+++||.+||-|||+.|.++.|.|+ |||+++.
T Consensus 18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 4689999999999997579999999999998 8999984
No 277
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.22 E-value=0.0017 Score=62.48 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=36.1
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE---eCCCCCC--H-HHHHHhccccCccc
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI---DAEHALD--P-SLAETIGVKTENLL 175 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i---s~E~~~~--~-~~~~~ig~~~~~l~ 175 (427)
++.++. +..|+++.|.|+||+||||| ++++.+...+..+.+.+ .+..... . ...+.+|+.++...
T Consensus 160 v~~lf~---~l~geiv~l~G~sG~GKSTl-l~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 160 IEELKE---YLKGKISTMAGLSGVGKSSL-LNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHHHH---HHSSSEEEEECSTTSSHHHH-HHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred HHHHHH---HhcCCeEEEECCCCCcHHHH-HHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 444443 34689999999999999999 77777776666566666 4433221 1 11134666666543
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.21 E-value=0.0057 Score=54.74 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEE
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~ 152 (427)
...+|.+++|.|+|||||||++..++..+...+-.+..
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 45578899999999999999988888766544444433
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.20 E-value=0.0058 Score=53.93 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=28.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
...-.+++|+|++|+|||||+..++..+...+..+..+.
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 444568999999999999998888877665554444443
No 280
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.20 E-value=0.0013 Score=66.17 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~ 147 (427)
+.+++|.||||+||||| ++++.++..+.
T Consensus 69 ~~~valvG~nGaGKSTL-ln~L~Gl~~p~ 96 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSF-INTLRGIGNEE 96 (413)
T ss_dssp CEEEEEEECTTSSHHHH-HHHHHTCCTTS
T ss_pred CeEEEEECCCCCcHHHH-HHHHhCCCCcc
Confidence 33999999999999999 77777765543
No 281
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.19 E-value=0.014 Score=55.92 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~ 160 (427)
+.-+.|.|+||+|||++|..+.......+.+.++++......
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE 66 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh
Confidence 345889999999999998887776655567788887665433
No 282
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.17 E-value=0.0052 Score=59.23 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhh-hcCceEEEEeCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAE 156 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~-~~~~~vv~is~E 156 (427)
+.-+.|+|+||+|||+||..++..+. ..+..++|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 57899999999999999988888887 777888888653
No 283
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.17 E-value=0.014 Score=59.21 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=40.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCcc
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (427)
..++|+||||+||||||..++... +...+.++...... ....+++..+..........
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~-------------------~~ir~~~~~a~~~~~~~~~~ 108 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGV-------------------KEIREAIERARQNRNAGRRT 108 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCH-------------------HHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCH-------------------HHHHHHHHHHHHhhhcCCCc
Confidence 459999999999999987776654 23344444221100 01122223333222345678
Q ss_pred EEEEecccccC
Q 014268 200 VVVVDSVAALV 210 (427)
Q Consensus 200 lvvIDsl~~l~ 210 (427)
+++||.+..+.
T Consensus 109 iLfIDEI~~l~ 119 (447)
T 3pvs_A 109 ILFVDEVHRFN 119 (447)
T ss_dssp EEEEETTTCC-
T ss_pred EEEEeChhhhC
Confidence 99999998875
No 284
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.17 E-value=0.0057 Score=56.72 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.+.-++++.|.+|+|||||+.+++..++ .+..++.++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3456899999999999999999999988 888999998764
No 285
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.0026 Score=58.24 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=29.9
Q ss_pred cccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 100 l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+|.|..--+. -+.+..++.|.|||||||+|.|..++..+ +..++++.
T Consensus 15 ~p~~~~~~~~-----~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstG 61 (217)
T 3umf_A 15 VPRGSHMTDQ-----KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSG 61 (217)
T ss_dssp ---------C-----CTTSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHH
T ss_pred CCCCccccch-----hccCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHH
Confidence 4455544443 55688999999999999999998887765 34566653
No 286
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.14 E-value=0.036 Score=57.38 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
...+++++|.|||||||++..++..+...+..+.+|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 346899999999999999999988775555556666643
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.14 E-value=0.0036 Score=56.46 Aligned_cols=26 Identities=8% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
.+|++++|.||+|+|||||+..++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999996665544
No 288
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=96.12 E-value=0.00048 Score=62.43 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhHhhhccCCCCCCcccccccccch-hhhHhhhhhhcccccCCCCCCcccccchhHHHHHHHHHHHHHHhc
Q 014268 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLET-STQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSF 80 (427)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~ 80 (427)
|+||++++++|+|+.. +.++...++... ..++..+.++++..++.....+...++..+.+++..+++.|++.+
T Consensus 123 a~iV~e~~~~R~li~~------~~~i~~~a~~~~~~~~~~~~ld~ae~~l~~i~~~~~~~~~~~i~~~l~~~~~~ie~~~ 196 (200)
T 2r5u_A 123 ASIVAEKALLRRLVEA------GTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSEDFVALEDLLQPTMDEIDAIA 196 (200)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHCSTTCCHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCccCCCHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Confidence 7899999999999997 666666555332 123334444445555554444445668888889999999998765
Q ss_pred C
Q 014268 81 G 81 (427)
Q Consensus 81 ~ 81 (427)
.
T Consensus 197 ~ 197 (200)
T 2r5u_A 197 S 197 (200)
T ss_dssp -
T ss_pred h
Confidence 4
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.11 E-value=0.0037 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++|.|+|||||||++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999988776654
No 290
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.08 E-value=0.0075 Score=58.81 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
..+.|+|++|+||||++..++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999888877664
No 291
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.06 E-value=0.0021 Score=67.47 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
.+.+++|.|+||+||||++..++..+...+..+++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 36799999999999999988888877777777877654
No 292
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.06 E-value=0.0041 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++|.++.|.|++||||||++..++..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999966665443
No 293
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.05 E-value=0.035 Score=53.46 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccE
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV 200 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l 200 (427)
.+.|+|+||+|||+||..++... +...+.++..... ....+...+. ......+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~---~~~~~~v 109 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE---------------------KSGDLAAILT---NLSEGDI 109 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC---------------------SHHHHHHHHH---TCCTTCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc---------------------chhHHHHHHH---hccCCCE
Confidence 47999999999999988886554 3445555432111 1122222221 2345789
Q ss_pred EEEecccccC
Q 014268 201 VVVDSVAALV 210 (427)
Q Consensus 201 vvIDsl~~l~ 210 (427)
++||.+..+.
T Consensus 110 l~lDEi~~l~ 119 (338)
T 3pfi_A 110 LFIDEIHRLS 119 (338)
T ss_dssp EEEETGGGCC
T ss_pred EEEechhhcC
Confidence 9999999885
No 294
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.04 E-value=0.0057 Score=54.37 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
.+|.+++|.|++||||||++..++..+ .+..++.++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 367899999999999999987776654 233454443
No 295
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.03 E-value=0.0028 Score=63.88 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCCCCCE--EEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRV--VEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~l--i~I~G~pGsGKTTLal~ia~~~ 143 (427)
-+++|++ ++|+|+||+||||| ++++.+.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTL-ln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTL-MDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHH-HHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHH-HHHHhCc
Confidence 4779999 99999999999999 6666554
No 296
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.03 E-value=0.0068 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
+++|.|.+||||||++..++..+...+-.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999998888877654455555443
No 297
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.02 E-value=0.0059 Score=59.66 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
..+|.+++|.|+||+|||||+.+++..+...++.+.+++...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 457899999999999999998888777766677777776553
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.01 E-value=0.0038 Score=54.18 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
.+++|.|+|||||||++..++.. ..+..+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecH
Confidence 47899999999999998877662 224567765
No 299
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.01 E-value=0.0047 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=20.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.+| +++|+|+||+|||||+ ..+..+
T Consensus 24 ~~~g-~~~i~G~NGsGKStll-~ai~~~ 49 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIG-DAILFV 49 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHH-HHHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHH-HHHHHH
Confidence 5577 9999999999999994 444443
No 300
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.01 E-value=0.0051 Score=54.28 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=23.0
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
.++|.+++|+|+|||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998777654
No 301
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.00 E-value=0.021 Score=62.68 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=48.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHH-HHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCc
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 198 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~-~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 198 (427)
..+.|+||||+|||++|..++..+...+.+.++++........ ....+|..+..+.+.. ...+.. .+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~---~g~l~~----~~~~~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE---GGQLTE----AVRRRPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHH----HHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc---cchHHH----HHHhCCC
Confidence 4789999999999999988888776666788888875444322 2222232221111110 111222 2233456
Q ss_pred cEEEEecccccC
Q 014268 199 DVVVVDSVAALV 210 (427)
Q Consensus 199 ~lvvIDsl~~l~ 210 (427)
.++++|.+..+.
T Consensus 662 ~vl~lDEi~~l~ 673 (854)
T 1qvr_A 662 SVILFDEIEKAH 673 (854)
T ss_dssp EEEEESSGGGSC
T ss_pred eEEEEecccccC
Confidence 799999997764
No 302
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.99 E-value=0.0032 Score=58.76 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
+++.++.|.|+|||||||++..++..+ +.+++++++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 356799999999999999988777654 23466777654
No 303
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.98 E-value=0.0051 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.+++|.|+|||||||++..++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999988877654
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.95 E-value=0.0051 Score=53.93 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+.+++|.|+|||||||++..++..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999988887655
No 305
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.94 E-value=0.0078 Score=53.07 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
+++|.|++||||||++..++..+...+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999888877775555555543
No 306
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.93 E-value=0.017 Score=58.10 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
...+++|+|+|||||||++..++..+ +..+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccc
Confidence 46899999999999999987765433 34555543
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.92 E-value=0.0048 Score=55.12 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
..+++|.|+|||||||++..++..+ +..+++.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCc
Confidence 4689999999999999987776655 34566665443
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.91 E-value=0.0051 Score=53.78 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.++.+++|.|+|||||||++..++..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467789999999999999987776554
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0047 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.+++|.|+|||||||+|..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999988776654
No 310
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.91 E-value=0.0042 Score=64.76 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCc-eEEEEeCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE 156 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~-~vv~is~E 156 (427)
+++|+++.|.|+||||||||+..++..+...++ .+.++++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 568999999999999999996666665544443 35567764
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.89 E-value=0.0041 Score=53.36 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~i 139 (427)
-+++|.|+|||||||+|..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999998777
No 312
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.88 E-value=0.023 Score=55.14 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=47.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCC-HHHHHHh--ccccCccccCC------CCCHHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETI--GVKTENLLLAQ------PDCGEQALSLVD 190 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~-~~~~~~i--g~~~~~l~~~~------~~~~~~~~~~~~ 190 (427)
..+.++||||+|||++|..++..+....... . .+.. -..++.+ +..++ +.... ...++++.+.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~----~-~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQG----H-KSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAVREVTE 98 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBT----T-BCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCC----C-CCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHHHHHHH
Confidence 3699999999999999999988775322110 0 0101 0111111 21121 22111 124556555554
Q ss_pred HHHh---cCCccEEEEecccccC
Q 014268 191 TLIR---SGSVDVVVVDSVAALV 210 (427)
Q Consensus 191 ~l~~---~~~~~lvvIDsl~~l~ 210 (427)
.+.. .++.++++||....|.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC
T ss_pred HHhhccccCCcEEEEECchhhcC
Confidence 4321 3457899999998886
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.88 E-value=0.0037 Score=55.02 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=25.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcC--ceEEEEeCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~--~~vv~is~E~ 157 (427)
+++.|+|++|||||||+..++..+...+ .+.+.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 4789999999999999655555554433 5667766543
No 314
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.87 E-value=0.018 Score=62.32 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=46.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCccE
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV 200 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l 200 (427)
.+.|+||||+|||++|..++..+...+.+.++++.....+. .... ...+.. .+......+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~------------~~~~----~~~l~~----~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK------------HSTS----GGQLTE----KVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS------------CCCC-------CHH----HHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc------------cccc----cchhhH----HHHhCCCeE
Confidence 69999999999999999888887666778888876432221 0000 111111 223345679
Q ss_pred EEEecccccC
Q 014268 201 VVVDSVAALV 210 (427)
Q Consensus 201 vvIDsl~~l~ 210 (427)
+++|.+..+.
T Consensus 583 l~lDEi~~~~ 592 (758)
T 3pxi_A 583 VLLDAIEKAH 592 (758)
T ss_dssp EEEECGGGSC
T ss_pred EEEeCccccC
Confidence 9999997765
No 315
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.86 E-value=0.048 Score=49.82 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh-hhcC----ceEEEEeC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA-QRQG----GYCVFIDA 155 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~-~~~~----~~vv~is~ 155 (427)
+..|+.+++.|++||||||+...++... ...+ ..+++...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p 117 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQP 117 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEES
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEecc
Confidence 3458999999999999998755555443 2222 25666554
No 316
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.82 E-value=0.0013 Score=63.66 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
+.+|++++|.|+||+||||| ++++........+.+.+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTL-ln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSL-LNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHH-HHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHH-HHHhcccccccccceee
Confidence 55799999999999999999 66666554443344444
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.0056 Score=57.20 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++|+|+||||||||+..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999998887654
No 318
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.77 E-value=0.022 Score=59.32 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEEeCCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEH 157 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~is~E~ 157 (427)
.+--++|+|.+|||||+++..++..++.. .-.++.+|..+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 34568999999999999988888877642 23466678765
No 319
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.76 E-value=0.0098 Score=58.34 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+.+.+++|+|+||+|||||...++......++.+.++..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 3577999999999999999666655555555666666544
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.75 E-value=0.0073 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.+++|.|+|||||||++..++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999976665543
No 321
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.75 E-value=0.0055 Score=58.62 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
.++.+++|+|++|||||||+..++..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36789999999999999997776666543
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.74 E-value=0.0039 Score=55.91 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
+++|.|++||||||++..++..+...+..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7899999999999998888777755444455443
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.73 E-value=0.0059 Score=55.66 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+..++.+++|.|+|||||||++..++..+
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999987776654
No 324
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.72 E-value=0.037 Score=53.07 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.++.|.|++|+|||+|+.+++..+. ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 5999999999999999888877653 3478888754
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.72 E-value=0.0073 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+|.+++|.|+|||||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999988887655
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.67 E-value=0.0045 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=17.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.+++|.|.|||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999987776544
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.66 E-value=0.0083 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+.+++|.|+|||||||+|..++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999988887655
No 328
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.65 E-value=0.031 Score=57.79 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=43.8
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE-eCCCCCC
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEHALD 160 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i-s~E~~~~ 160 (427)
..-+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++... ...-++|. -+|...+
T Consensus 208 ~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~iGER~~E 267 (588)
T 3mfy_A 208 EVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGCGERGNE 267 (588)
T ss_dssp CSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEECCSSSSH
T ss_pred CcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEecccHHH
Confidence 4578899999999986 6699999999999999999977765432 22345554 3444433
No 329
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.64 E-value=0.053 Score=51.68 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=40.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCcc
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (427)
..+.|+|+||+|||+||..++... +...++++...... ..++...+.. ......
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~---------------------~~~l~~~l~~--~~~~~~ 92 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEK---------------------PGDLAAILAN--SLEEGD 92 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCS---------------------HHHHHHHHTT--TCCTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCC---------------------hHHHHHHHHH--hccCCC
Confidence 458899999999999988887655 34556665432211 1222222111 024567
Q ss_pred EEEEecccccC
Q 014268 200 VVVVDSVAALV 210 (427)
Q Consensus 200 lvvIDsl~~l~ 210 (427)
+++||.+..+.
T Consensus 93 ~l~lDEi~~l~ 103 (324)
T 1hqc_A 93 ILFIDEIHRLS 103 (324)
T ss_dssp EEEETTTTSCC
T ss_pred EEEEECCcccc
Confidence 99999998875
No 330
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.027 Score=54.09 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhc---CceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHh-
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 194 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~---~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~- 194 (427)
.-.++++||||+|||+++..++..+... ...+.+++.+. ....++++.+.+..+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHHHHHHHHHHHhhc
Confidence 3489999999999999998888753211 11233443221 01234455454443321
Q ss_pred --cCCccEEEEecccccC
Q 014268 195 --SGSVDVVVVDSVAALV 210 (427)
Q Consensus 195 --~~~~~lvvIDsl~~l~ 210 (427)
.++.++++||....|.
T Consensus 78 p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMT 95 (305)
T ss_dssp CSSSSSEEEEETTGGGBC
T ss_pred cccCCceEEEeccHHHhC
Confidence 2457899999998886
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.60 E-value=0.0083 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.+++|.|+|||||||+|..++..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999988877655
No 332
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.57 E-value=0.034 Score=61.06 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=41.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhh-------cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~-------~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l 192 (427)
.-++|+|+||+|||+++..++..+.. .+..+++++...... |.. + .......+...+..+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~-----~-~g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK-----Y-RGEFEERLKAVIQEV 258 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc-----c-chHHHHHHHHHHHHH
Confidence 34789999999999998888887754 245667766532110 000 0 001112222333333
Q ss_pred HhcCCccEEEEecccccCC
Q 014268 193 IRSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 193 ~~~~~~~lvvIDsl~~l~~ 211 (427)
....+..+++||.+..+.+
T Consensus 259 ~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HTTCSSEEEEECCC-----
T ss_pred HhcCCCeEEEEecHHHHhc
Confidence 3334567999999998874
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.57 E-value=0.014 Score=58.01 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=38.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhc
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIG 168 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig 168 (427)
..+..+.|+|++|+|||||+..++..+...+..++++|..... ..+++.+|
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~g 83 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY-KEMCRKLG 83 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS-HHHHHHTT
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH-HHHHHHcC
Confidence 3566789999999999999888888887778888889876543 33444443
No 334
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.55 E-value=0.012 Score=56.95 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
+..-++++|+|--|.||||++.|++..+++.|.+|+.+|..-
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 556789999999999999999999999999999999999873
No 335
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.53 E-value=0.0084 Score=54.35 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+++|.|||||||+|.|..++..+ +..++|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence 57899999999999998887765 45677754
No 336
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.51 E-value=0.013 Score=54.68 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
++.|.|..|+||||++.+++..++..|.+|+++|...
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 5667899999999999999999998889999998874
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.48 E-value=0.011 Score=54.78 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=27.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhc-----CceEEEEeCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~-----~~~vv~is~E~ 157 (427)
-+++|.|++||||||+|..++..+... +..++++++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 489999999999999988777654321 34566777653
No 338
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.45 E-value=0.015 Score=52.95 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
.+|.+++|.|++||||||++..++..+...+..++..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4688999999999999999888887776666666544
No 339
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.44 E-value=0.015 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+..-+.|+||||+|||++|..++..+ +.++++++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 45568999999999999988887665 4456666543
No 340
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.42 E-value=0.016 Score=52.89 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCCEEEEEc-CCCCCHHHHHHHHHHHhhhc-CceEEEEeCCCC
Q 014268 118 KGRVVEIYG-PEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~G-~pGsGKTTLal~ia~~~~~~-~~~vv~is~E~~ 158 (427)
.+.++.|++ ..|+||||++.+++..++.. |.+|+++|....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 456676665 58999999999999999988 999999998744
No 341
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.42 E-value=0.02 Score=53.98 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=36.0
Q ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~G~-pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
+..++.|++. +|.||||++.+++..++..|.+|+++|....
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4568888876 8999999999999999988999999998754
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.39 E-value=0.0099 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++|.|++||||||++..++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999988777655
No 343
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.37 E-value=0.019 Score=54.91 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.0
Q ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~G~-pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
++.++.|++. +|.||||++.+++..++..|.+|++||....
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578888886 8999999999999999988999999998753
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.36 E-value=0.0097 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+.|.|+|||||||++..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999988877654
No 345
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.35 E-value=0.009 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
+++|.|+|||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999666543
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.34 E-value=0.0072 Score=59.52 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.4
Q ss_pred CCCC--CCEEEEEcCCCCCHHHHHHHHHHHhhhc
Q 014268 115 GLPK--GRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (427)
Q Consensus 115 Gi~~--G~li~I~G~pGsGKTTLal~ia~~~~~~ 146 (427)
-+++ |+.++|.|+|||||||| ++++.++..+
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTL-lk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVL-VNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHH-HHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHH-HHHHHHHhCC
Confidence 4667 99999999999999999 5555555443
No 347
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.32 E-value=0.078 Score=57.22 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=46.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCH-HHHHHhccccCccccCCCCCHHHHHHHHHHHHhcCCcc
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~-~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (427)
.+.|+||||+|||++|..++..+ +...++++.....+. ..++.+|..+. ....+....+...++.....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~~ 559 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSSE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCCc
Confidence 68999999999999988887766 456777775433221 11122222211 11111111122233445578
Q ss_pred EEEEecccccC
Q 014268 200 VVVVDSVAALV 210 (427)
Q Consensus 200 lvvIDsl~~l~ 210 (427)
++++|.+..+.
T Consensus 560 vl~lDEi~~~~ 570 (758)
T 1r6b_X 560 VLLLDEIEKAH 570 (758)
T ss_dssp EEEEETGGGSC
T ss_pred EEEEeCccccC
Confidence 99999998765
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.32 E-value=0.01 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.+++|.|+|||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999988877655
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.32 E-value=0.0092 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++.|.|+|||||||+|..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999988877654
No 350
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.31 E-value=0.016 Score=54.89 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
++.|.|..|+||||++.+++..++..|.+|+.+|....
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 56778999999999999999999988889999988743
No 351
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.30 E-value=0.033 Score=54.63 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=45.4
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCCCCHHHHHHhc
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIG 168 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~~~~~~~~~ig 168 (427)
+.|+.++. . +.-.++++.|..|+||||++.+++..++ ..|.+|+.+|... ...+...+|
T Consensus 7 ~~L~~~l~--~-~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~--~~~l~~~~~ 67 (348)
T 3io3_A 7 PTLESIVQ--H-DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP--AHNLSDAFC 67 (348)
T ss_dssp SSSHHHHT--C-TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS--SCHHHHHHT
T ss_pred hhHHHHhc--C-CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC--CCChHHHhc
Confidence 45666775 1 2347999999999999999999999999 8899999999973 233444444
No 352
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.30 E-value=0.012 Score=59.65 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
...+.||+..+|.++. +-+|+-+.|+|++|+|||+|+.+++.....
T Consensus 132 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 132 DEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 3468999999999986 679999999999999999998776665543
No 353
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.29 E-value=0.054 Score=53.61 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=33.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
.++.+.|..|+||||++.+++..++..|.+|+++|.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 367889999999999999999999999999999998
No 354
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.28 E-value=0.011 Score=54.13 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=37.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccc
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK 170 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~ 170 (427)
+.|.|..|+||||++.+++..++..|.+|+.+|.... ..+...+|+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~--~~l~~~lg~~ 49 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD--SCLGQTLGLS 49 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT--SCHHHHTTCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC--cChHHHhCCC
Confidence 4558999999999999999999999999999998763 3333444443
No 355
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.27 E-value=0.0092 Score=56.98 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
++-+++|.|++||||||++..++..+...+..+.++++....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999888776554444457778766543
No 356
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.26 E-value=0.13 Score=52.36 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
..+++++|.||+||||++..++..+......+..|+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 458999999999999999998877654444444444
No 357
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.26 E-value=0.016 Score=61.62 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
...+.+|.||||+|||+.+.+++..+...+..++..+.-+.
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 56799999999999999999999988888888887765443
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.25 E-value=0.01 Score=52.80 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
+++|.|+|||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999766655
No 359
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.25 E-value=0.034 Score=54.44 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=45.1
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccc
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK 170 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~ 170 (427)
+..++. .-+.-.++++.|..|+||||++.+++..++..|.+|+.+|+... ..+...++..
T Consensus 16 ~~~~~~--~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~~ 75 (349)
T 3ug7_A 16 TEKKLE--KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQE 75 (349)
T ss_dssp HHHHHH--SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCSC
T ss_pred HHHhhc--ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCCC
Confidence 344444 44456678888999999999999999999999999999998762 3445555543
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.24 E-value=0.012 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
..+++|.|+|||||||++..++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999988776654
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.24 E-value=0.011 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+|-+++|.|+|||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999988887665
No 362
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.22 E-value=0.011 Score=57.43 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.++|+||||+|||||+..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999966665544
No 363
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.22 E-value=0.0074 Score=56.43 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCC---CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPK---GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~---G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
-+.+ |++++|.|++||||||++..++..+
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3557 9999999999999999976666544
No 364
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.19 E-value=0.016 Score=53.29 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhc----CceEEEE
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFI 153 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~----~~~vv~i 153 (427)
-..+|.+++|.|++||||||++..++..+... +..+++.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 45689999999999999999988888777655 6666544
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.16 E-value=0.013 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++|.|+|||||||+|..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988776654
No 366
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.16 E-value=0.014 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++.|.|.|||||||++..++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999987776654
No 367
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.16 E-value=0.021 Score=52.64 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=32.5
Q ss_pred CEEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.++.|+ +..|+||||++.+++..++..|.+|+++|...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456664 55889999999999999998899999999875
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.14 E-value=0.013 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
..+++|.|+|||||||++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999987776543
No 369
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.12 E-value=0.014 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++-+++|.|+|||||||+|..++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999988887654
No 370
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.10 E-value=0.019 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
-++.|.|+||+|||++|..++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~ 30 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDE 30 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999988776654
No 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.08 E-value=0.078 Score=59.06 Aligned_cols=54 Identities=28% Similarity=0.218 Sum_probs=37.6
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh--h-hcCceEEEEeCCCCCC
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA--Q-RQGGYCVFIDAEHALD 160 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~--~-~~~~~vv~is~E~~~~ 160 (427)
..|...|. ......++.|.|+.|+||||||.+++... . ..+.+++|++.....+
T Consensus 138 eeL~elL~--~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 138 LKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp HHHHHHHH--HCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred HHHHHHHh--ccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 34444554 22346799999999999999999887532 2 2355689988765554
No 372
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.07 E-value=0.028 Score=53.47 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=35.1
Q ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~G~-pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
++.++.|++. +|.||||++.+++..++..|.+|+++|....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 4567777765 8999999999999999988999999998764
No 373
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.05 E-value=0.039 Score=58.86 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++++..++|.|++|+|||||+..++...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 4678999999999999999977776543
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.02 E-value=0.013 Score=50.57 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++.|.|+|||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999988776654
No 375
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.02 E-value=0.026 Score=52.25 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCce-EEEE
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFI 153 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~-vv~i 153 (427)
.-.+|.+++|.|++||||||++..++..+...+.. +++.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 44568899999999999999988888777666656 4443
No 376
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.01 E-value=0.018 Score=52.83 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
..++|.++.|.|++||||||++..++..+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35688999999999999999976665544
No 377
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.98 E-value=0.022 Score=53.86 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.-+.|+||||+|||++|..++..+ +..+++++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 467899999999999988887765 4466777654
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.96 E-value=0.014 Score=52.44 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++|.|+|||||||+|..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987776544
No 379
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.96 E-value=0.02 Score=54.23 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=35.0
Q ss_pred CCCEEEEEc---CCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 118 KGRVVEIYG---PEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~G---~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
.+.++.|++ ..|+||||++.+++..++..|.+|+.+|....
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 356777776 89999999999999999988999999998753
No 380
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.96 E-value=0.013 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.|..++|.|++|+||||||+.++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 36789999999999999988876543
No 381
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.90 E-value=0.038 Score=57.29 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
...+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++.+
T Consensus 213 ~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 213 DVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp CSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhc
Confidence 4678899999999986 779999999999999999998776655
No 382
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.88 E-value=0.017 Score=55.71 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+++|.|++|||||||+. .+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~-~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLR-HILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHH-HHHHS
T ss_pred cEEEEEecCCCCHHHHHH-HHHhh
Confidence 589999999999999954 44444
No 383
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.88 E-value=0.0072 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~i 139 (427)
+++|..++|+|+||+|||||...+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 778999999999999999995443
No 384
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.84 E-value=0.026 Score=55.10 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.+++|+|++||||||||..++..+. +.+++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccc
Confidence 4899999999999999988877652 4555544
No 385
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.83 E-value=0.021 Score=53.14 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.4
Q ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 118 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 118 ~G~li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
++.++.|+ +..|+||||++.+++..++ .|.+|+++|....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 45677664 5689999999999999999 8999999998743
No 386
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.83 E-value=0.025 Score=57.44 Aligned_cols=80 Identities=24% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHH-
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~- 193 (427)
|..++.-+.|+||||+|||+||..++..+.. ....++++....... .....+.+...+...+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~f~~a~~ 121 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEVYST----------------EIKKTEVLMENFRRAIG 121 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGGCCS----------------SSCHHHHHHHHHHHTEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHHHHH----------------hhhhhHHHHHHHHHHHh
Confidence 4445566899999999999999888877532 245565554322110 0011122222222221
Q ss_pred -hcCCccEEEEecccccCC
Q 014268 194 -RSGSVDVVVVDSVAALVP 211 (427)
Q Consensus 194 -~~~~~~lvvIDsl~~l~~ 211 (427)
....+.++++|.+..+.+
T Consensus 122 ~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 122 LRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp EEEEEEEEEEEEEEEEEEE
T ss_pred hhhcCCcEEEEechhhccc
Confidence 234577899998888764
No 387
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.80 E-value=0.031 Score=51.76 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=31.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.+..+..|+||||++.+++..++..|.+|+++|...
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 344677899999999999999998888999999875
No 388
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=94.80 E-value=0.36 Score=39.58 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHhhh--cCceEEEEeCCCCCCHHHHHHhccccCccccCCCCCHHHHHHHHHHHHhc
Q 014268 119 GRVVEIY-GPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (427)
Q Consensus 119 G~li~I~-G~pGsGKTTLal~ia~~~~~--~~~~vv~is~E~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~l~~~ 195 (427)
+.+++|. -.+|.|=..|.+-++..+.. .++.++|+..............|++++++.+.++....+.+..+.+.++.
T Consensus 2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs 81 (119)
T 1ofu_X 2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL 81 (119)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence 3466664 55888888887888887765 67889999887767777888999999999999999999999999999999
Q ss_pred CCccEEEEe
Q 014268 196 GSVDVVVVD 204 (427)
Q Consensus 196 ~~~~lvvID 204 (427)
+.+..|+..
T Consensus 82 g~~~aVl~w 90 (119)
T 1ofu_X 82 GRSHTVVSW 90 (119)
T ss_dssp TCEEEEEEC
T ss_pred CCccEEEEC
Confidence 999888864
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.80 E-value=0.022 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++..++|.|+|||||||++..++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999988887765
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.79 E-value=0.02 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+.|.|.|||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999987776644
No 391
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.78 E-value=0.033 Score=50.62 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCc-eEEE
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVF 152 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~-~vv~ 152 (427)
+|.+++|.|++||||||++..++..+...+. .+++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 5789999999999999998888777766664 4443
No 392
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.77 E-value=0.0018 Score=59.86 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
++++|.|||||||||| +.++..+..+..+.+++++
T Consensus 28 ~~~~i~GpnGsGKSTl-l~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTT-MAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp HHHHHHSCCSHHHHHH-HHHHHHHHSCCTTTC----
T ss_pred cEEEEECCCCCCHHHH-HHHHhcccccCCCeEEECC
Confidence 4778999999999999 6677776655444444443
No 393
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.76 E-value=0.019 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.-++.|.|+|||||||++..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987776655
No 394
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.73 E-value=0.018 Score=56.72 Aligned_cols=25 Identities=44% Similarity=0.745 Sum_probs=20.7
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
+++| +++|+|+||+||||| +..+..
T Consensus 24 ~~~g-~~~i~G~nG~GKttl-l~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNL-LEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHH-HHHHHH
T ss_pred EcCC-eEEEECCCCCChhHH-HHHHHH
Confidence 5688 999999999999999 555443
No 395
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.73 E-value=0.017 Score=51.55 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.++|.||+|+|||||+..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999977776554
No 396
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.73 E-value=0.022 Score=48.62 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
+++|+||||+||||+.-.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999444433
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.034 Score=49.88 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
-.++|+|++|+|||||+.+++...... ..+..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 379999999999999988888776443 4566666553
No 398
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.71 E-value=0.021 Score=58.08 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=39.1
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
.+.+.||+..+|.++. +-+|+-+.|.|++|+|||+|+.+++....
T Consensus 133 ~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 133 KDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred ccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999986 66999999999999999999777777664
No 399
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.69 E-value=0.031 Score=52.64 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.1
Q ss_pred hHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 107 LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
|...+. |..++...++|+||||+|||.||..++..+
T Consensus 93 l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 555665 334767789999999999999988777654
No 400
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.69 E-value=0.021 Score=57.39 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+.+|++++|.||||+||||| +..+..+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstl-l~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNM-MDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHH-HHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHHhhh
Confidence 44689999999999999999 55555443
No 401
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.67 E-value=0.04 Score=54.04 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=41.6
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh--hcCceEEEEeCCCC
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHA 158 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~--~~~~~vv~is~E~~ 158 (427)
+.|+.++. . +.-.+++..|..|.||||++.+++..++ ..|.+|+.+|....
T Consensus 7 ~~l~~l~~-~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLIT-S--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHT-C--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred ccHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 45667765 1 2346888889999999999999999999 88999999998864
No 402
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.65 E-value=0.031 Score=50.80 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=32.1
Q ss_pred CEEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.++.|+ +..|+||||++.+++..++..|.+|+++|...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 355555 56899999999999999998888999999875
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.64 E-value=0.02 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~ 141 (427)
..+++|.|++||||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999766654
No 404
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.64 E-value=0.017 Score=58.51 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
-..+.||+..+|.++. +-+|+-..|+|++|+|||+|+.+++....
T Consensus 128 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 128 EQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 4578999999999986 77999999999999999999877666553
No 405
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.62 E-value=0.026 Score=59.51 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
.|..+.|.||||+||||||..++..+.....+.+++..
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 67899999999999999977766655443334555543
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.62 E-value=0.022 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+++|.|+|||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999988877655
No 407
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.61 E-value=0.037 Score=58.05 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
...++.+.|.+|+||||++.+++..++..|.+|+++|+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4679999999999999999999999999899999999885
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.59 E-value=0.015 Score=56.62 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++.+++|+||+|+|||||+..++..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999998887654
No 409
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.57 E-value=0.022 Score=59.28 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+|..++|+||||+||||||..++..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999987776654
No 410
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.56 E-value=0.026 Score=51.78 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 156 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E 156 (427)
.+|.+++|.|.+||||||++..++..+.. .+..++++.-|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 36889999999999999998888887766 66666664433
No 411
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.54 E-value=0.012 Score=54.93 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 014268 122 VEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.|+||||+|||+||..++..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999988887765
No 412
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.53 E-value=0.029 Score=58.88 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=41.8
Q ss_pred hhhHHhhcCCC--CCCCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 105 FALDIALGTGG--LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 105 ~~LD~~l~~GG--i~~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
+.||.+++ | -....++++.|.+|+||||++.+++..++..|..++++|...
T Consensus 313 ~~l~~~~~--~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp 365 (589)
T 1ihu_A 313 PSLSALVD--DIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 365 (589)
T ss_dssp CCHHHHHH--HHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred chhhhhhh--hhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence 66777766 3 234457778899999999999999999999899999998874
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.52 E-value=0.023 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
++-+++|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999766644
No 414
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.52 E-value=0.037 Score=49.81 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=30.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
.+..+..|+||||++.+++..++..| +|+++|....
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 34457799999999999999999888 9999998743
No 415
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.49 E-value=0.022 Score=57.86 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCc-eEEEEeCC
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE 156 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~-~vv~is~E 156 (427)
.++|.|+||+|||+++..++..+...+. .++.+..-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 9999999999999999888888876665 56665443
No 416
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.49 E-value=0.036 Score=55.19 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 114 GGLPKGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 114 GGi~~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
|=+++|..++|+|+||+||||| ++.+.+
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL-~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTF-FRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHH-HHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHH-HHHHHC
Confidence 3678899999999999999999 555555
No 417
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.46 E-value=0.17 Score=54.45 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
.+.-++|+|+||+|||+++..++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5667899999999999998888877643
No 418
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.41 E-value=0.037 Score=51.56 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 119 GRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 119 G~li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
+.++.|+ +..|+||||++.+++..++..|.+|+++|.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4566665 5689999999999999999888899999987543
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.39 E-value=0.026 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++|.|+|||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988877655
No 420
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.29 E-value=0.2 Score=53.60 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCC
Q 014268 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 156 (427)
Q Consensus 115 Gi~~G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E 156 (427)
++..|+.++|+||+|||||+.+...+..... .+..++|+..-
T Consensus 42 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 42 GLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp TTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 4567899999999999999998776665433 57788888643
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.25 E-value=0.03 Score=49.64 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
++.|.|++||||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999987776644
No 422
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=94.23 E-value=0.039 Score=57.01 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCccccCchhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 97 ~~~l~TG~~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
...+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++.+.
T Consensus 202 ~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~ 245 (578)
T 3gqb_A 202 NTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWS 245 (578)
T ss_dssp CSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHS
T ss_pred CCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhcc
Confidence 4678899999999886 6699999999999999999987766553
No 423
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.16 E-value=0.041 Score=53.81 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
++.-+.|+||||+|||++|..++..+ +.+.+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45568999999999999988887765 345555543
No 424
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.10 E-value=0.062 Score=52.08 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~ 158 (427)
-.++++.|..|+||||++.+++..++..|.+|+++|....
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4688889999999999999999999998999999998753
No 425
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.10 E-value=0.082 Score=59.58 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=58.6
Q ss_pred hhhHHhhcCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHhhh----cCceEEEEeCCCCCCHH-------HHHHhccccCc
Q 014268 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDPS-------LAETIGVKTEN 173 (427)
Q Consensus 105 ~~LD~~l~~GGi~~G~li~I~G~pGsGKTTLal~ia~~~~~----~~~~vv~is~E~~~~~~-------~~~~ig~~~~~ 173 (427)
..|...|. .+=..-.++.|.|+.|+||||||.+++..... ...+++|++........ +...++....
T Consensus 134 ~~l~~~l~-~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~- 211 (1249)
T 3sfz_A 134 HAIQQKLW-KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES- 211 (1249)
T ss_dssp HHHHHHHH-TTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCT-
T ss_pred HHHHHHHh-hccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcc-
Confidence 34555552 11134568999999999999999888765321 34578888876543311 1222222111
Q ss_pred cccCCCCCHHHHHHHHHHHHhcC-CccEEEEeccc
Q 014268 174 LLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVA 207 (427)
Q Consensus 174 l~~~~~~~~~~~~~~~~~l~~~~-~~~lvvIDsl~ 207 (427)
..-..+...+++.+.++.++... +.-|+|+|.+-
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 212 FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence 11122345677777776655433 24588999864
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.05 E-value=0.028 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+.+++|+||+|+|||||+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999998887654
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.03 E-value=0.03 Score=53.06 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
.+++|.|+|||||||++..++... .+..+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecc
Confidence 479999999999999988776632 13556654
No 428
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.03 E-value=0.03 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+++|+|++|||||||+..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999998887654
No 429
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.00 E-value=0.056 Score=48.63 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=29.8
Q ss_pred EEEEEc-CCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 121 VVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 121 li~I~G-~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
++.|++ .+|+||||++.+++..+++.|.+|++++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 455666 58999999999999999988999999873
No 430
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.93 E-value=0.035 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=21.4
Q ss_pred CCCE--EEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRV--VEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~l--i~I~G~pGsGKTTLal~ia~~~ 143 (427)
+|++ ++|.|+||+||||++..++..+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5555 9999999999999987776654
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.87 E-value=0.038 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
-.-+++|+|.+||||||++..++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999997777654
No 432
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.87 E-value=0.051 Score=48.85 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
-.++|+|.+|+|||||+.+++...... ..+..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 368899999999999999998876443 3444444
No 433
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.86 E-value=0.053 Score=57.20 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
+|.++.|.|.|||||||++..++..+...+..+++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 67899999999999999998888877555666777763
No 434
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.85 E-value=0.035 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~ 141 (427)
|.-++|.|++|+||||+|+.++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 66799999999999999988876
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.85 E-value=0.036 Score=53.40 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
..+++|+||+|+|||||+..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999998887764
No 436
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.85 E-value=0.052 Score=54.49 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
..-+.|+|++|+|||+++..++.++...+..++++|...
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 346899999999999998888888887888899998764
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.84 E-value=0.033 Score=48.10 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=18.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia 140 (427)
+|.-++|+|+||+|||||...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 56789999999999999965554
No 438
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.81 E-value=0.08 Score=53.64 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=16.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~i 139 (427)
.++|+|+||+|||||...+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 7999999999999995555
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.77 E-value=0.038 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
.++|.|+||+|||||+..++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999996555543
No 440
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.67 E-value=0.038 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
.++|.|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999996555543
No 441
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.64 E-value=0.32 Score=48.98 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTT-LALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTT-Lal~ia~~~~~~~~~vv~is~ 155 (427)
.++++++.|++|||||+ +++.++..+...+..++|+..
T Consensus 18 ~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~P 56 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAP 56 (451)
T ss_dssp TTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECC
Confidence 47889999999999999 567777776666777888863
No 442
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.47 E-value=0.042 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia 140 (427)
..+++|+|++||||||+|..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999987776
No 443
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.44 E-value=0.3 Score=52.25 Aligned_cols=95 Identities=25% Similarity=0.286 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH-HhhhcCceEEEEeCCCCCCHHHHHHh------ccccC----ccc-----cCC-
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIA-EAQRQGGYCVFIDAEHALDPSLAETI------GVKTE----NLL-----LAQ- 178 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~-~~~~~~~~vv~is~E~~~~~~~~~~i------g~~~~----~l~-----~~~- 178 (427)
+..|+.++|+||.|+|||+.+...+. .+...+..++|+..-...-....+++ |+... ... ...
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~ 115 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKY 115 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGC
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCC
Confidence 44688999999999999998755544 33335778888875433222222222 22110 000 000
Q ss_pred ---CCCHHHHHHHHHHHHh-cCCccEEEEecccccC
Q 014268 179 ---PDCGEQALSLVDTLIR-SGSVDVVVVDSVAALV 210 (427)
Q Consensus 179 ---~~~~~~~~~~~~~l~~-~~~~~lvvIDsl~~l~ 210 (427)
-.|.+.+...++.-.. -.++++||||.+..+.
T Consensus 116 ~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 116 DIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred CEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 0144555444443111 2357899999999875
No 444
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.43 E-value=0.062 Score=48.94 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
.+|.+++|.|++|+||||++..++..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999998777776643
No 445
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.43 E-value=0.077 Score=47.81 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEE
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~i 153 (427)
|.+|+|-|..||||||++..++..+. .+..+++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 56899999999999999877777664 45566554
No 446
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.33 E-value=0.33 Score=48.66 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHhhhcCceEEEEeC
Q 014268 118 KGRVVEIYGPEASGKTTLA-LHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLa-l~ia~~~~~~~~~vv~is~ 155 (427)
+|+.+++.|+.|+|||..+ +.++..+...+..++|+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 4789999999999999976 4455455566667888764
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.32 E-value=0.047 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+|.+++|.|.+||||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999987776655
No 448
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.26 E-value=0.065 Score=50.61 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=32.5
Q ss_pred CEEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCC
Q 014268 120 RVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (427)
Q Consensus 120 ~li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~ 157 (427)
.++.|+ +..|+||||++.+++..++..|.+|+++|...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 355555 56899999999999999998899999999875
No 449
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.24 E-value=0.076 Score=55.56 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhhhcC-ceEEEEeCC
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAE 156 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~~~~~-~~vv~is~E 156 (427)
+.|.++.|.|.|||||||+|..++..+...| ..+.+++.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 3577999999999999999988887776545 567777754
No 450
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.15 E-value=0.055 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
.++|.|+||+|||||...++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999666543
No 451
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.00 E-value=0.037 Score=53.00 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.0
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~ 141 (427)
++|+|+||+|||||...++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999554443
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.93 E-value=0.06 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 120 RVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.+++|+||+|+|||||+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 489999999999999999988766
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.80 E-value=0.049 Score=47.38 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
-++|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999666554
No 454
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.80 E-value=0.091 Score=54.62 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
+.++.|.|.+||||||++..++..+...+..+.+++.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 78999999999999999988887776566667777753
No 455
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.80 E-value=0.12 Score=46.18 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEe
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is 154 (427)
+|+|-|..||||||.+..++..+...|..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6889999999999998888777777777776654
No 456
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.73 E-value=0.21 Score=53.26 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCC
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E 156 (427)
.|+.++|+||+|+|||+.+...+......+..++|+..-
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 367899999999999999877666555557788888743
No 457
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.70 E-value=0.084 Score=55.76 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhh-cCceEEEEeCCC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEH 157 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~-~~~~vv~is~E~ 157 (427)
+.+++|.||||+|||+++..++..+.. .+..+++...-.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 468999999999999998888887765 456677665443
No 458
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.68 E-value=0.078 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.8
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHV 139 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~i 139 (427)
.+++|+|+||+||||+.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 49999999999999994333
No 459
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.50 E-value=0.098 Score=49.38 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcC--ceEEEEeC
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDA 155 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~~~~--~~vv~is~ 155 (427)
+.|+||||+|||+++..++..+...+ ..+++++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 89999999999999988888764322 23455544
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.44 E-value=0.069 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+..++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999997666654
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.34 E-value=0.072 Score=44.53 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~ 142 (427)
++++|++|+|||||+..++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999997777654
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.33 E-value=0.075 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
.++|+|++|+|||||...++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999666653
No 463
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.33 E-value=0.076 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999997776653
No 464
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.33 E-value=0.077 Score=47.58 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
+-++.|.|++||||||++..++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999977665543
No 465
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=92.31 E-value=0.061 Score=52.82 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=32.6
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCC
Q 014268 121 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (427)
Q Consensus 121 li~I~-G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~ 159 (427)
++.|+ +..|+||||++.+++..++..|.+|+++|+....
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~ 42 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC 42 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 34444 6799999999999999999989999999987543
No 466
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.30 E-value=0.25 Score=44.37 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeCCCCCCHHHHHHhccccCccc
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL 175 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~E~~~~~~~~~~ig~~~~~l~ 175 (427)
|--+++|.|.|||||++++-.+...+-. .++..++.-++..+.+++..|.+++.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~--~~~~vv~msD~iK~~~a~~~gl~~~~~l 65 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGA--DVCAVLRLSGPLKEQYAQEHGLNFQRLL 65 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCT--TTEEEECTHHHHHHHHHHTTTCCCC---
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCC--CCceEEEccHHHHHHHHHHcCCCchhhc
Confidence 5569999999999999997665443321 1344455443333457778888876653
No 467
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.30 E-value=0.088 Score=53.56 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhhh
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAEAQR 145 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~~~~ 145 (427)
...-++|+|+||+|||+++..++..+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446789999999999999888887753
No 468
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.16 E-value=0.054 Score=52.05 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=24.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHhhhcCceEEEEeC
Q 014268 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~~~~~~~~~vv~is~ 155 (427)
|.-+.|+|+||+|||+||..++..+ +....++..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~ 79 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQF 79 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEec
Confidence 4579999999999999988776654 334444543
No 469
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.14 E-value=0.083 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|.|++|+|||||+.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999997777643
No 470
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.11 E-value=0.087 Score=49.96 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~~ 144 (427)
.+.|+||||+|||+++..++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 389999999999999988887764
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.11 E-value=0.038 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHh
Q 014268 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 117 ~~G~li~I~G~pGsGKTTLal~ia~~~ 143 (427)
.++.+++|.|.+||||||++..++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999999976655443
No 472
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.08 E-value=0.12 Score=51.09 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=33.3
Q ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHhh------hcCceEEEEeCCC
Q 014268 118 KGRVVEIY-GPEASGKTTLALHVIAEAQ------RQGGYCVFIDAEH 157 (427)
Q Consensus 118 ~G~li~I~-G~pGsGKTTLal~ia~~~~------~~~~~vv~is~E~ 157 (427)
++.++.|+ |..|+||||++.+++..++ ..|.+|+++|...
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 45666666 6799999999999999988 4688999999874
No 473
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.06 E-value=0.094 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
-.+|.|+|||||||+|..++..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46899999999999988887665
No 474
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.05 E-value=0.083 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999997666643
No 475
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.90 E-value=0.091 Score=44.62 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia 140 (427)
-++|+|++|+|||||...++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 37899999999999966654
No 476
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.90 E-value=0.1 Score=43.78 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~ 142 (427)
++|+|++|+|||||+..++.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999997777654
No 477
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.89 E-value=0.088 Score=44.31 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~ 142 (427)
++|+|++|+|||||...++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999997776654
No 478
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.78 E-value=0.097 Score=44.24 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.4
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia 140 (427)
++|+|++|+|||||+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999966664
No 479
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.71 E-value=0.093 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||...++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999997666543
No 480
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.099 Score=44.07 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~ 141 (427)
-++|+|++|+|||||...++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999666654
No 481
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.63 E-value=0.094 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||...++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999997766644
No 482
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.61 E-value=0.078 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia 140 (427)
+..++|.|+||+|||||+..++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999955554
No 483
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.61 E-value=0.11 Score=43.82 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~ 141 (427)
++|+|++|+|||||+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999766654
No 484
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.59 E-value=0.055 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhh
Q 014268 122 VEIYGPEASGKTTLALHVIAEAQ 144 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~~~ 144 (427)
+.|+|+||+|||+||..++..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999888777553
No 485
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.58 E-value=0.11 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHH
Q 014268 120 RVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 120 ~li~I~G~pGsGKTTLal~ia~ 141 (427)
.+++|+||||+||||++-.+..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999554544
No 486
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.57 E-value=0.098 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999997666654
No 487
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.56 E-value=0.11 Score=43.73 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia~~ 142 (427)
++|+|++|+|||||...++.+
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999997666653
No 488
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.54 E-value=0.1 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||...++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999997776654
No 489
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.48 E-value=0.1 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||...++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999997776653
No 490
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.46 E-value=0.1 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
-++|+||||+|||++|..++..+
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 38899999999999988887765
No 491
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=91.45 E-value=0.063 Score=58.61 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Q 014268 116 LPKGRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 116 i~~G~li~I~G~pGsGKTTLal~ia~ 141 (427)
||+|.+++|+|.+||||||||...+.
T Consensus 33 iP~~~l~viTGvSGSGKSSLafdtl~ 58 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAFGTLY 58 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHTTTHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999999987654
No 492
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.40 E-value=0.12 Score=45.02 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Q 014268 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 118 ~G~li~I~G~pGsGKTTLal~ia~~ 142 (427)
+.--++|+|++|+|||||+..++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999997666544
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.36 E-value=0.26 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia 140 (427)
.++|+|+||+|||||...++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~ 24 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA 24 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999965553
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.32 E-value=0.11 Score=43.81 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 014268 122 VEIYGPEASGKTTLALHVI 140 (427)
Q Consensus 122 i~I~G~pGsGKTTLal~ia 140 (427)
++|+|++|+|||||+..++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999965553
No 495
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.24 E-value=0.11 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Q 014268 119 GRVVEIYGPEASGKTTLALHVIA 141 (427)
Q Consensus 119 G~li~I~G~pGsGKTTLal~ia~ 141 (427)
.--++|+|++|+|||||...++.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999766654
No 496
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.19 E-value=0.13 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999997777654
No 497
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.19 E-value=0.11 Score=44.30 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+..++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999997776643
No 498
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.15 E-value=0.11 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||...++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999997776654
No 499
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.12 E-value=0.11 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 014268 121 VVEIYGPEASGKTTLALHVIAEA 143 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~~ 143 (427)
-++|+|++|+|||||+.+++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999976776543
No 500
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.09 E-value=0.12 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 014268 121 VVEIYGPEASGKTTLALHVIAE 142 (427)
Q Consensus 121 li~I~G~pGsGKTTLal~ia~~ 142 (427)
-++|+|++|+|||||+..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999997776643
Done!