Query 014270
Match_columns 427
No_of_seqs 218 out of 420
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 03:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 2.2E-24 4.7E-29 164.2 6.9 50 272-321 1-50 (51)
2 PLN03162 golden-2 like transcr 99.9 4.2E-24 9.1E-29 214.9 7.8 64 185-249 232-295 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 2E-21 4.3E-26 150.1 6.5 56 188-243 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.2 0.00097 2.1E-08 48.8 5.3 48 190-241 1-48 (48)
5 PF14379 Myb_CC_LHEQLE: MYB-CC 91.3 0.41 8.8E-06 37.4 4.5 34 287-321 6-39 (51)
6 smart00426 TEA TEA domain. 88.4 0.51 1.1E-05 38.8 3.2 46 192-239 5-67 (68)
7 PF15235 GRIN_C: G protein-reg 78.6 1.4 3.1E-05 40.5 2.2 19 294-312 71-89 (137)
8 PF01519 DUF16: Protein of unk 69.4 22 0.00048 31.5 7.1 34 291-324 64-97 (102)
9 TIGR02894 DNA_bind_RsfA transc 56.4 59 0.0013 30.9 7.8 52 185-242 43-94 (161)
10 smart00717 SANT SANT SWI3, AD 54.8 44 0.00095 22.6 5.2 43 191-239 2-45 (49)
11 PF01285 TEA: TEA/ATTS domain 54.6 9.4 0.0002 40.7 2.6 55 186-240 45-112 (431)
12 PF12776 Myb_DNA-bind_3: Myb/S 54.2 17 0.00038 29.2 3.6 49 192-240 1-61 (96)
13 smart00501 BRIGHT BRIGHT, ARID 44.0 24 0.00052 29.0 3.0 44 196-240 33-83 (93)
14 cd00167 SANT 'SWI3, ADA2, N-Co 42.1 1E+02 0.0022 20.5 5.4 44 192-240 1-44 (45)
15 PF07384 DUF1497: Protein of u 31.6 39 0.00084 27.0 2.2 21 192-212 37-57 (59)
16 PRK10803 tol-pal system protei 26.3 2.1E+02 0.0046 28.3 6.7 44 280-323 54-97 (263)
17 KOG3841 TEF-1 and related tran 22.7 81 0.0018 34.0 3.3 51 188-240 74-141 (455)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.90 E-value=2.2e-24 Score=164.20 Aligned_cols=50 Identities=64% Similarity=0.891 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014270 272 TMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQME 321 (427)
Q Consensus 272 ~~~i~EaLr~QmEVQkrLhEQLEvQR~LQlRIEaQGKyLq~~leka~k~~ 321 (427)
|++|+||||+||||||||||||||||+||+|||||||||++|||+|+++.
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~ 50 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL 50 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.90 E-value=4.2e-24 Score=214.89 Aligned_cols=64 Identities=47% Similarity=0.762 Sum_probs=60.4
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccCCCC
Q 014270 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPES 249 (427)
Q Consensus 185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~s 249 (427)
..+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~ 295 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA 295 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence 4789999999999999999999999 699999999999999999999999999999999886543
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.84 E-value=2e-21 Score=150.11 Aligned_cols=56 Identities=54% Similarity=0.865 Sum_probs=54.4
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhh
Q 014270 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTA 243 (427)
Q Consensus 188 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 243 (427)
|+|++||+|+|++|++||+.||+.+.|+||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.16 E-value=0.00097 Score=48.84 Aligned_cols=48 Identities=31% Similarity=0.363 Sum_probs=41.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhH
Q 014270 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYR 241 (427)
Q Consensus 190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 241 (427)
|..||+|=+..|++||.++|.- .-+.|.+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999932 5788999998 8999999999999985
No 5
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=91.25 E-value=0.41 Score=37.42 Aligned_cols=34 Identities=38% Similarity=0.550 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014270 287 KRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQME 321 (427)
Q Consensus 287 krLhEQLEvQR~LQlRIEaQGKyLq~~leka~k~~ 321 (427)
.-|+.|+||||.|.=.+|.| |-||.-+|.+.+-.
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 56889999999999999999 67888888777654
No 6
>smart00426 TEA TEA domain.
Probab=88.39 E-value=0.51 Score=38.84 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=29.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCch-hHhhh---cC-----------CCCc--cHHHHHHHHHH
Q 014270 192 RWTPELHEAFVEAVNRLGGGERATPK-GVLKL---MN-----------VENL--TIYHVKSHLQK 239 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qLGG~~kAtPK-~IL~l---M~-----------v~gL--T~~hVkSHLQK 239 (427)
.|.++|-..|++|+...- ...+=| .++.. .| ..|. |..+|.||||.
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 699999999999998765 222222 12111 11 2443 77889999984
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=78.59 E-value=1.4 Score=40.49 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 014270 294 EIQRNLQLRIEEQGRHLQM 312 (427)
Q Consensus 294 EvQR~LQlRIEaQGKyLq~ 312 (427)
.||+||+++||+|+|.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 5899999999999987654
No 8
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=69.43 E-value=22 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014270 291 EQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEK 324 (427)
Q Consensus 291 EQLEvQR~LQlRIEaQGKyLq~~leka~k~~~~~ 324 (427)
.|=|.-+.||.+|.+||+-|++|++.-+.++..+
T Consensus 64 ~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 64 KQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455558899999999999999999888876543
No 9
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.39 E-value=59 Score=30.93 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=38.4
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHh
Q 014270 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 242 (427)
Q Consensus 185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 242 (427)
++....|||+..+-.++.+||..-- -.+-.+++. ...||+..|-+-||.|..
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 3467899999999999999998644 122222211 367999999999999973
No 10
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=54.82 E-value=44 Score=22.60 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=32.8
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCCchhHhhhcCCCCccHHHHHHHHHH
Q 014270 191 MRWTPELHEAFVEAVNRLG-GGERATPKGVLKLMNVENLTIYHVKSHLQK 239 (427)
Q Consensus 191 lrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQK 239 (427)
-.||++=...|+.+|.++| +- =+.|-+.|+ +=|...|+.+-.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~----w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNN----WEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 42 355666664 7788888776544
No 11
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=54.56 E-value=9.4 Score=40.65 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=29.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCch----------hHhhhcCC-CC--ccHHHHHHHHHHh
Q 014270 186 ANKSRMRWTPELHEAFVEAVNRLGGGERATPK----------GVLKLMNV-EN--LTIYHVKSHLQKY 240 (427)
Q Consensus 186 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK----------~IL~lM~v-~g--LT~~hVkSHLQKY 240 (427)
+++..-+|.+++...|++|+...-=..+..-+ -|-+.+.. -| =|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 46788999999999999999776411122211 01111111 23 4888999999998
No 12
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=54.21 E-value=17 Score=29.21 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHh---CCC-CCCCc-----hhHhhhcCC---CCccHHHHHHHHHHh
Q 014270 192 RWTPELHEAFVEAVNRL---GGG-ERATP-----KGVLKLMNV---ENLTIYHVKSHLQKY 240 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qL---GG~-~kAtP-----K~IL~lM~v---~gLT~~hVkSHLQKY 240 (427)
+||++..+-||+.+-+. |+- ..... ..|.+.|+- -.+|..||++|+...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999988443 432 12222 345555542 446889999998843
No 13
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=44.00 E-value=24 Score=29.05 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCCCC----chhHhhhcCCCCc---cHHHHHHHHHHh
Q 014270 196 ELHEAFVEAVNRLGGGERAT----PKGVLKLMNVENL---TIYHVKSHLQKY 240 (427)
Q Consensus 196 ELH~rFV~AV~qLGG~~kAt----PK~IL~lM~v~gL---T~~hVkSHLQKY 240 (427)
+|++-|+ +|..+||.+..+ =+.|.+.||++.- ...++|+|-+||
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~ 83 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERY 83 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHH
Confidence 7999998 599999976433 3678889998752 356688887777
No 14
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=42.06 E-value=1e+02 Score=20.53 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 192 RWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
.||.+=+..|+.++.++|- ..=+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 22456666664 46777888776543
No 15
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=31.62 E-value=39 Score=26.96 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=18.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCC
Q 014270 192 RWTPELHEAFVEAVNRLGGGE 212 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qLGG~~ 212 (427)
.+..|+|..|-+-|.+|||-+
T Consensus 37 kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 37 KFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred HhhHHHHHHHHHHHHHhcccc
Confidence 578999999999999999843
No 16
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.25 E-value=2.1e+02 Score=28.31 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014270 280 RLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENE 323 (427)
Q Consensus 280 r~QmEVQkrLhEQLEvQR~LQlRIEaQGKyLq~~leka~k~~~~ 323 (427)
++|+|+|.+|.+--.=-+.|.=.||++..-|+.|.++|...-.+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788776643333567788999999999999998875433
No 17
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=22.75 E-value=81 Score=33.95 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=32.9
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhc----C----------C---CCccHHHHHHHHHHh
Q 014270 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLM----N----------V---ENLTIYHVKSHLQKY 240 (427)
Q Consensus 188 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM----~----------v---~gLT~~hVkSHLQKY 240 (427)
-..=+|.++.-+.|.||+...- .--+-|-||.-- | . +-=|+.+|.||.|..
T Consensus 74 daegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVl 141 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 141 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3445899999999999997764 223344444311 1 1 334777888888854
Done!