Query 014270
Match_columns 427
No_of_seqs 218 out of 420
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 5.9E-29 2E-33 195.5 7.1 61 185-246 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 88.2 1.3 4.4E-05 35.4 6.7 50 185-240 13-62 (79)
3 2cu7_A KIAA1915 protein; nucle 87.1 2 7E-05 33.0 7.0 54 187-246 6-59 (72)
4 2hzd_A Transcriptional enhance 86.4 0.72 2.5E-05 37.9 4.3 58 187-246 3-77 (82)
5 2yum_A ZZZ3 protein, zinc fing 85.1 2 7E-05 33.0 6.1 56 187-245 5-63 (75)
6 2iw5_B Protein corest, REST co 75.0 4.6 0.00016 38.8 6.0 51 187-243 130-180 (235)
7 2xag_B REST corepressor 1; ami 74.7 4 0.00014 42.6 6.0 54 186-245 376-429 (482)
8 2ba2_A D12_ORF131, hypothetica 74.7 11 0.00036 31.3 7.3 48 274-324 33-80 (85)
9 1x41_A Transcriptional adaptor 73.8 4.4 0.00015 30.1 4.5 49 187-241 5-54 (60)
10 2cqq_A RSGI RUH-037, DNAJ homo 69.9 6.6 0.00023 30.9 4.9 47 191-243 9-58 (72)
11 2cqr_A RSGI RUH-043, DNAJ homo 66.3 31 0.0011 27.1 8.1 50 189-241 17-67 (73)
12 1ity_A TRF1; helix-turn-helix, 64.1 36 0.0012 25.6 7.9 52 186-241 6-58 (69)
13 2elk_A SPCC24B10.08C protein; 63.6 7 0.00024 28.9 3.7 47 190-241 9-56 (58)
14 2kes_A Synphilin-1; synphillin 56.1 14 0.00046 27.5 4.0 29 278-306 8-41 (48)
15 2eqr_A N-COR1, N-COR, nuclear 55.1 15 0.00051 27.4 4.3 47 184-236 6-52 (61)
16 2yqk_A Arginine-glutamic acid 53.9 14 0.00047 28.0 4.0 48 185-237 4-51 (63)
17 3sjm_A Telomeric repeat-bindin 50.2 48 0.0016 25.1 6.5 47 187-236 8-54 (64)
18 1guu_A C-MYB, MYB proto-oncoge 48.4 50 0.0017 23.3 6.0 46 190-240 3-48 (52)
19 2da3_A Alpha-fetoprotein enhan 47.5 41 0.0014 25.4 5.8 63 183-248 14-76 (80)
20 2dim_A Cell division cycle 5-l 47.4 49 0.0017 24.9 6.2 50 186-240 5-54 (70)
21 2d9a_A B-MYB, MYB-related prot 45.2 24 0.00083 25.7 4.0 50 186-240 4-53 (60)
22 2cjj_A Radialis; plant develop 39.2 44 0.0015 27.4 5.0 48 192-242 10-58 (93)
23 1wgx_A KIAA1903 protein; MYB D 38.1 39 0.0013 26.9 4.4 46 192-240 10-56 (73)
24 1w0t_A Telomeric repeat bindin 36.7 91 0.0031 22.1 5.9 48 190-240 2-49 (53)
25 1gvd_A MYB proto-oncogene prot 36.5 89 0.003 22.0 5.8 46 190-240 3-48 (52)
26 4eef_G F-HB80.4, designed hema 34.3 11 0.00039 30.4 0.8 44 192-238 22-66 (74)
27 1deq_A Fibrinogen (alpha chain 31.5 64 0.0022 33.0 5.8 41 273-313 112-153 (390)
28 3ghg_A Fibrinogen alpha chain; 29.1 68 0.0023 34.2 5.7 40 273-312 109-149 (562)
29 2aje_A Telomere repeat-binding 28.2 1.4E+02 0.0048 25.0 6.5 58 183-246 6-65 (105)
30 2dmt_A Homeobox protein BARH-l 27.3 2E+02 0.007 21.8 7.4 62 184-248 15-76 (80)
31 2li6_A SWI/SNF chromatin-remod 27.0 13 0.00045 31.0 -0.0 43 195-240 49-95 (116)
32 2lm1_A Lysine-specific demethy 25.4 31 0.0011 28.0 2.0 45 195-240 44-94 (107)
33 2din_A Cell division cycle 5-l 24.6 1.8E+02 0.0062 21.4 6.0 55 187-248 6-60 (66)
34 2e1o_A Homeobox protein PRH; D 24.6 1.6E+02 0.0055 21.7 5.7 60 184-246 5-64 (70)
35 2cra_A Homeobox protein HOX-B1 23.6 2.2E+02 0.0076 21.0 7.4 63 183-248 4-66 (70)
36 2cxy_A BAF250B subunit, HBAF25 22.8 37 0.0013 28.7 2.0 45 195-240 51-101 (125)
37 2o1k_A NS28, non-structural gl 22.7 1.5E+02 0.0052 22.5 5.0 35 284-318 7-41 (52)
38 1c20_A DEAD ringer protein; DN 22.4 38 0.0013 28.6 2.0 45 195-240 52-103 (128)
39 2k9n_A MYB24; R2R3 domain, DNA 21.4 1.8E+02 0.0063 23.3 5.9 47 190-242 53-99 (107)
40 2eqy_A RBP2 like, jumonji, at 21.0 44 0.0015 28.2 2.1 44 196-240 43-92 (122)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=5.9e-29 Score=195.48 Aligned_cols=61 Identities=52% Similarity=0.803 Sum_probs=58.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014270 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR 246 (427)
Q Consensus 185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 246 (427)
+.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+...|
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 699999999999999999999999999999998765
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.23 E-value=1.3 Score=35.35 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
.....+-.||+|=+++|++||..+|+- =+.|-+.| ++=|..+++.|-++|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 344557789999999999999999943 35666666 478999999998887
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.05 E-value=2 Score=32.96 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=42.5
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR 246 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 246 (427)
...+-.||+|=++.|+++|.++|- .=+.|-+. ++|=|..+|+.|-++|-..+.+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHh
Confidence 455668999999999999999993 33556555 4789999999999998655433
No 4
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.39 E-value=0.72 Score=37.91 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=38.2
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhh---hc-C-----------C--CCccHHHHHHHHHHhHhhccC
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLK---LM-N-----------V--ENLTIYHVKSHLQKYRTARHR 246 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~---lM-~-----------v--~gLT~~hVkSHLQKYRl~~~~ 246 (427)
++..-+|.++|-..|++|+...-=.... |-+|. .| | . .-=|+.+|.||||.-|..+.+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 4566789999999999999887611122 22231 11 1 1 334888999999987765443
No 5
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.07 E-value=2 Score=32.98 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCc---hhHhhhcCCCCccHHHHHHHHHHhHhhcc
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLGGGERATP---KGVLKLMNVENLTIYHVKSHLQKYRTARH 245 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~~~ 245 (427)
...+-.||+|=+++|+++|..+|. +...| +.|-+.| +|=|..+|+.|-++|-....
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 344558999999999999999992 22222 3444444 68999999999999976544
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=74.95 E-value=4.6 Score=38.78 Aligned_cols=51 Identities=25% Similarity=0.463 Sum_probs=41.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhh
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTA 243 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 243 (427)
.|..-+||+|=++.|++|+...|-- =..|-++ |++=|..+||.|-++||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGRD----FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 4667789999999999999999932 4556665 5788999999999998853
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=74.73 E-value=4 Score=42.60 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=43.1
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhcc
Q 014270 186 ANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARH 245 (427)
Q Consensus 186 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~ 245 (427)
..+..-+||.|=|..|++||.+.|- .=+.|-++++- =|..+|++|-++||....
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence 3456789999999999999999993 24566667654 499999999999987543
No 8
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=74.70 E-value=11 Score=31.34 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014270 274 SITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEK 324 (427)
Q Consensus 274 ~i~EaLr~QmEVQkrLhEQLEvQR~LQlRIEaQGKyLq~~leka~k~~~~~ 324 (427)
.|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+.++..+
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~~nkRL 80 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQGINKRL 80 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677777765333333443 8899999999999999999888776543
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.85 E-value=4.4 Score=30.10 Aligned_cols=49 Identities=29% Similarity=0.327 Sum_probs=38.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhHhhhcCCCCccHHHHHHHHHHhH
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLG-GGERATPKGVLKLMNVENLTIYHVKSHLQKYR 241 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 241 (427)
.-.|-.||+|=.+++++||.++| +- =+.|-+.| +|=|..+++.|-++|-
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHc
Confidence 34456799999999999999999 32 24566666 6889999999988774
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=69.93 E-value=6.6 Score=30.86 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchh---HhhhcCCCCccHHHHHHHHHHhHhh
Q 014270 191 MRWTPELHEAFVEAVNRLGGGERATPKG---VLKLMNVENLTIYHVKSHLQKYRTA 243 (427)
Q Consensus 191 lrWT~ELH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYRl~ 243 (427)
-.||.|=+++|+.|+..+++ -||.+ |-+.| |=|..+|+.|-+++...
T Consensus 9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 36999999999999999984 35654 44555 68999999998887554
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.34 E-value=31 Score=27.10 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=39.5
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcC-CCCccHHHHHHHHHHhH
Q 014270 189 SRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMN-VENLTIYHVKSHLQKYR 241 (427)
Q Consensus 189 ~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQKYR 241 (427)
.+-.||.+=..+|++||..+|. -+|.+--++-. |+|=|..+|+.|-+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3446999999999999999992 37766554433 57999999999988764
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=64.14 E-value=36 Score=25.63 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhHhhhcCCCCccHHHHHHHHHHhH
Q 014270 186 ANKSRMRWTPELHEAFVEAVNRLG-GGERATPKGVLKLMNVENLTIYHVKSHLQKYR 241 (427)
Q Consensus 186 ~~K~RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 241 (427)
.++.|-.||+|=-++.+++|.++| |- =+.|.+.|+..|=|-.+++.+-..|-
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGN----WSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSC----HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCc----HHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 577888999999999999999999 32 36677788655888899988766553
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=63.59 E-value=7 Score=28.92 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=35.4
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCCchhHhhhcCCCCccHHHHHHHHHHhH
Q 014270 190 RMRWTPELHEAFVEAVNRLG-GGERATPKGVLKLMNVENLTIYHVKSHLQKYR 241 (427)
Q Consensus 190 RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 241 (427)
+-.||+|=.+++++||.+.| +-. +.|-+.|+. |=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W----~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNW----ADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCH----HHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 432 344455431 678899998887763
No 14
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=56.08 E-value=14 Score=27.52 Aligned_cols=29 Identities=38% Similarity=0.512 Sum_probs=20.0
Q ss_pred HHHHHH-HHHHHHHHH----HHHHHHHHHhHHHH
Q 014270 278 ALRLQM-EVQKRLHEQ----LEIQRNLQLRIEEQ 306 (427)
Q Consensus 278 aLr~Qm-EVQkrLhEQ----LEvQR~LQlRIEaQ 306 (427)
.|--|. .+-|+|+|| +.+|.+||.-+|+|
T Consensus 8 slasqvvkltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 8 SLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444453 677888888 45777777777776
No 15
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.11 E-value=15 Score=27.43 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=35.1
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHH
Q 014270 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSH 236 (427)
Q Consensus 184 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH 236 (427)
...++..-.||+|=|+.|++|+.+.|-- =..|-++ |+|=|..+|.-|
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPKN----FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHH--CTTSCHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHH--cCCCCHHHHHHH
Confidence 3456778899999999999999999821 2444444 568888887654
No 16
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.93 E-value=14 Score=27.97 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=32.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHH
Q 014270 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHL 237 (427)
Q Consensus 185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 237 (427)
.+...+-.||+|=|+.|.+|+.+.|= + =..|-+.| |+.-|..+|..+-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence 45566679999999999999999992 1 12333311 5667777776443
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=50.20 E-value=48 Score=25.06 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHH
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSH 236 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH 236 (427)
.+.|-.||+|=-++.+++|.+.|. -.=+.|.+.+++.|=|-.+++-+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHH
Confidence 345678999999999999999992 12456888887788888888754
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=48.42 E-value=50 Score=23.27 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=35.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 1235566665 588888998877665
No 19
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.50 E-value=41 Score=25.43 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=42.7
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccCCC
Q 014270 183 MTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPE 248 (427)
Q Consensus 183 ~~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~ 248 (427)
....++.|.++|++-- ..++.+.+.. ...+...+.+|...-|||..+|+-=.|.-|...++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3456778888888633 3344444443 3455666667777778999999999998887665544
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.37 E-value=49 Score=24.86 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 186 ANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 186 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
+...|=.||+|=.++++++|.++|- ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 4556778999999999999999992 12356667765 78888888776665
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=45.17 E-value=24 Score=25.73 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 186 ANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 186 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
+...|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3566778999999999999999992 1124555554 678888888776655
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=39.25 E-value=44 Score=27.44 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhHhhhc-CCCCccHHHHHHHHHHhHh
Q 014270 192 RWTPELHEAFVEAVNRLGGGERATPKGVLKLM-NVENLTIYHVKSHLQKYRT 242 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYRl 242 (427)
.||.|=...|++|+.++|. -+|.+--++- -|+|=|..+|+.|-+++..
T Consensus 10 ~WT~eEd~~L~~al~~~~~---~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDK---DTPDRWANVARAVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5999999999999999982 2565433322 2579999999999887753
No 23
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=38.06 E-value=39 Score=26.89 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhHhhhc-CCCCccHHHHHHHHHHh
Q 014270 192 RWTPELHEAFVEAVNRLGGGERATPKGVLKLM-NVENLTIYHVKSHLQKY 240 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKY 240 (427)
.||.+=.++|.+|+..++ +.+|-+-.++- -|+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999987 34787766544 37899999999876654
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=36.66 E-value=91 Score=22.13 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
|-.||+|=.+..+++|..+|. ..=+.|.+.|+..|=|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 123567777765577888887654443
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=36.45 E-value=89 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014270 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
|-.||+|=.++++++|.++|.. .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4579999999999999999931 123455554 688888888876665
No 26
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=34.31 E-value=11 Score=30.38 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcC-CCCccHHHHHHHHH
Q 014270 192 RWTPELHEAFVEAVNRLGGGERATPKGVLKLMN-VENLTIYHVKSHLQ 238 (427)
Q Consensus 192 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQ 238 (427)
.||.+=.+.|..|+...+ +-+|.+-.++-. |+|=|...|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999998875 567877666544 68999999999865
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.51 E-value=64 Score=33.02 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=34.8
Q ss_pred cChHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014270 273 MSITEALRLQME-VQKRLHEQLEIQRNLQLRIEEQGRHLQMM 313 (427)
Q Consensus 273 ~~i~EaLr~QmE-VQkrLhEQLEvQR~LQlRIEaQGKyLq~~ 313 (427)
.++++-|+-|++ +|+++.+||.--|.||--|+.|-.-+|+|
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467888988875 89999999998899999999998877764
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.08 E-value=68 Score=34.19 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=28.7
Q ss_pred cChHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014270 273 MSITEALRLQM-EVQKRLHEQLEIQRNLQLRIEEQGRHLQM 312 (427)
Q Consensus 273 ~~i~EaLr~Qm-EVQkrLhEQLEvQR~LQlRIEaQGKyLq~ 312 (427)
.+|++-||-++ .++++|..||..-|.||=.|++|-.-||+
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46776666665 47777777777777788777777766664
No 29
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=28.21 E-value=1.4e+02 Score=25.03 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=42.2
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcC--CCCccHHHHHHHHHHhHhhccC
Q 014270 183 MTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMN--VENLTIYHVKSHLQKYRTARHR 246 (427)
Q Consensus 183 ~~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~--v~gLT~~hVkSHLQKYRl~~~~ 246 (427)
....++.|-.||+|=-+..+++|.++|. -.=+.|++.+. .+|=|--++|. |||...++
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKd---rWrnllk~ 65 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKD---KWKTLVHT 65 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHH---HHHHHHHT
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 3457899999999999999999999993 12346777653 47889999996 56655443
No 30
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.33 E-value=2e+02 Score=21.78 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccCCC
Q 014270 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPE 248 (427)
Q Consensus 184 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~ 248 (427)
...++.|.++|.+-.... +.+.+.- ...++..+.+|...-|||..+|+-=.|.-|..-++..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~L-e~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGL-EKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHH-HHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHH-HHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 346788888998644333 3333332 3455666677777788999999999998887665544
No 31
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.97 E-value=13 Score=31.03 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhHhhhcCCCCccHHHHHHHHHHh
Q 014270 195 PELHEAFVEAVNRLGGGERATP----KGVLKLMNVENLTIYHVKSHLQKY 240 (427)
Q Consensus 195 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKY 240 (427)
-+|++-|.. |..+||.++.+- +.|.+.||++. -..++.|-.||
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~ 95 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRI 95 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHH
Confidence 478888875 788999876554 56888999987 56788776665
No 32
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.39 E-value=31 Score=28.04 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhHhhhcCCCCcc--HHHHHHHHHHh
Q 014270 195 PELHEAFVEAVNRLGGGERATP----KGVLKLMNVENLT--IYHVKSHLQKY 240 (427)
Q Consensus 195 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKY 240 (427)
-+||+-|.. |..+||.++.+- +.|.+.||++.-| ...++.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 379998876 678999876654 4678889987633 24566655555
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.58 E-value=1.8e+02 Score=21.38 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccCCC
Q 014270 187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPE 248 (427)
Q Consensus 187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~ 248 (427)
...|-.||+|=.++++++|.++|. .=..|-++| |=|-.+|+.|-+.|-....+.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhChHhcCC
Confidence 345567999999999999999983 235565644 6889999999888855444433
No 34
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.57 E-value=1.6e+02 Score=21.75 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014270 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR 246 (427)
Q Consensus 184 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 246 (427)
...+++|.++|.+-... ++.+.+.- ...+...+.+|...-|||..+|+-=.|.-|..-++
T Consensus 5 ~~~~r~R~~ft~~q~~~-Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIE-LEKKFETQ--KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCCCCCCCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHcC--CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 34678899999864433 33333332 34566667777778899999999999877765443
No 35
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.64 E-value=2.2e+02 Score=20.95 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=43.3
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccCCC
Q 014270 183 MTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPE 248 (427)
Q Consensus 183 ~~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~ 248 (427)
....++.|.+.|++-.. .++.+.+.- ...++..+.+|...-|||..+|+-=.|.-|..-++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLR-ELEREYAAN--KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHH-HHHHHHHHC--SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHH-HHHHHHHhc--CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34567889999987433 333333333 3455666667777789999999999998887655544
No 36
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=22.80 E-value=37 Score=28.67 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhHhhhcCCCCcc--HHHHHHHHHHh
Q 014270 195 PELHEAFVEAVNRLGGGERATP----KGVLKLMNVENLT--IYHVKSHLQKY 240 (427)
Q Consensus 195 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKY 240 (427)
-+||+-|.. |..+||.++.+- +.|.+.||++.-| ...+|.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 378988876 779999876553 4678889998643 23455544443
No 37
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=22.70 E-value=1.5e+02 Score=22.48 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014270 284 EVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRK 318 (427)
Q Consensus 284 EVQkrLhEQLEvQR~LQlRIEaQGKyLq~~leka~ 318 (427)
.|=+.+.+|||+--+|--|==+|=+.|..|.+.-.
T Consensus 7 rivkemrrQl~mIdkLTtREiEQVeLL~rIyd~L~ 41 (52)
T 2o1k_A 7 RVVKEMRRQLEMIDKLTTREIEQVELLKRIYDKLT 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36678899999999999999999999999987644
No 38
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=22.37 E-value=38 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhHhhhcCCCCc-c--HHHHHHHHHHh
Q 014270 195 PELHEAFVEAVNRLGGGERATP----KGVLKLMNVENL-T--IYHVKSHLQKY 240 (427)
Q Consensus 195 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKY 240 (427)
-+||+-|.. |..+||.++.+- +.|.+.||++.- | ...+|.|-.||
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~ 103 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 379998876 778999876553 467888998652 2 45677766655
No 39
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.44 E-value=1.8e+02 Score=23.26 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=36.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHh
Q 014270 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 242 (427)
Q Consensus 190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 242 (427)
+-.||+|=...++++|.++|. .=..|-+.| +|=|-.+|+.|-..+.-
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHh
Confidence 447999999999999999993 234566655 78999999988765543
No 40
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.95 E-value=44 Score=28.19 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHhhhcCCCCcc--HHHHHHHHHHh
Q 014270 196 ELHEAFVEAVNRLGGGERATP----KGVLKLMNVENLT--IYHVKSHLQKY 240 (427)
Q Consensus 196 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKY 240 (427)
+|++-|.. |..+||.++.+- +.|.+.||++.-+ ...++.|-.||
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78988876 788999876554 4678889987533 24566665554
Done!