BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014273
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LHYAA + ++ K +++ G AD+N KD+ GRT LH AA+ +++ L+SKGA + +
Sbjct: 74 LHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 337 TSDGRTAVAICR 348
SDGRT + + R
Sbjct: 133 DSDGRTPLDLAR 144
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LHYAA + ++ K +++ G AD+N KD+ GRT LH AA+ +++ L+SKGA +
Sbjct: 41 LHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 337 TSDGRT 342
SDGRT
Sbjct: 100 DSDGRT 105
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 280 AAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSD 339
AA N K+++ G AD+N D+ GRT LH AA+ +++ L+SKGA + SD
Sbjct: 11 AAENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 340 GRT 342
GRT
Sbjct: 70 GRT 72
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LHYAA + ++ K +L+ G AD N KD+ GRT LH AA +++ LLSKGA
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 332 CASETTSDGRTAVAICR 348
+ + SDGRT + + R
Sbjct: 128 DPNTSDSDGRTPLDLAR 144
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LHYAA + ++ K +L+ G AD N KD+ GRT LH AA +++ LLSKGA
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 332 CASETTSDGRTAV 344
+ SDGRT +
Sbjct: 95 DPNAKDSDGRTPL 107
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 280 AAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSD 339
AA N K++L G AD N D+ GRT LH AA +++ LLSKGA + SD
Sbjct: 11 AAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 340 GRTAV 344
GRT +
Sbjct: 70 GRTPL 74
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH+AA + +V K +++ G AD+N KD+ GRT LH AA V++ L+SKGA + +
Sbjct: 74 LHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 337 TSDGRTAVAICR 348
SDGRT + + R
Sbjct: 133 DSDGRTPLDLAR 144
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH+AA + +V K +++ G AD+N KD+ GRT LH AA V++ L+SKGA +
Sbjct: 41 LHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 99
Query: 337 TSDGRT 342
SDGRT
Sbjct: 100 DSDGRT 105
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 280 AAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSD 339
AA N K+++ G AD+N D+ GRT LH AA V++ L+SKGA + SD
Sbjct: 11 AAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 340 GRT 342
GRT
Sbjct: 70 GRT 72
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LH AA + +V K +L+ G AD N KD+ G+T LH+AA V++ LLS+GA
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 332 CASETTSDGRTAVAICR 348
+ + SDGRT + + R
Sbjct: 128 DPNTSDSDGRTPLDLAR 144
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LH AA + +V K +L+ G AD N KD+ G+T LH+AA V++ LLS+GA
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 332 CASETTSDGRTAVAIC 347
+ SDG+T + +
Sbjct: 95 DPNAKDSDGKTPLHLA 110
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 280 AAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSD 339
AA N K++L G AD+N D+ G+T LH+AA V++ LLS+GA + SD
Sbjct: 11 AAENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 340 GRTAVAIC 347
G+T + +
Sbjct: 70 GKTPLHLA 77
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH A+ Y N K+ K +L AD+N K G + LH AA++ ++ LL GA +E
Sbjct: 315 LHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 337 TSDGRTAVAICRRM 350
+SDG T +AI +R+
Sbjct: 374 SSDGTTPLAIAKRL 387
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
DD LH AA + + K +L A+ NL G T LH+AAR + LL K A
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 332 CASETTSDGRTAVAICRRMTR 352
+ T G T + + + +
Sbjct: 138 SQACMTKKGFTPLHVAAKYGK 158
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + +V K +L A +N K +T LH AAR +++ LL A +
Sbjct: 51 LHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 337 TSDGRTAVAICRR 349
T+ G T + I R
Sbjct: 110 TTAGHTPLHIAAR 122
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA +V + +L G N + +G T LH+AA+ ++ LLSK A +
Sbjct: 216 LHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 337 TSDGRTAVAICRR 349
G T + + +
Sbjct: 275 NKSGLTPLHLVAQ 287
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + +V K +L G AD+N KD GRT LH+AAR V++ LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 337 TSDGRTAVAICRR 349
+GRT + + R
Sbjct: 65 DKNGRTPLHLAAR 77
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
LH AA + +V K +L G AD+N KD GRT LH+AAR V++ LL GA
Sbjct: 39 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 307 GRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
GRT LH+AAR V++ LL GA + +GRT + + R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + +V K +L G AD+N KD GRT LH+AAR V++ LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 337 TSDGRTAVAICRR 349
+GRT + + R
Sbjct: 65 DKNGRTPLHLAAR 77
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + +V K +L G AD+N KD GRT LH+AAR V++ LL GA +
Sbjct: 39 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 337 TSDGRTAVAICRR 349
+GRT + + R
Sbjct: 98 DKNGRTPLHLAAR 110
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
LH AA + +V K +L G AD+N KD GRT LH+AAR V++ LL GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 307 GRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
GRT LH+AAR V++ LL GA + +GRT + + R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + + ++ + +L G AD+N KD+ G T LH+AARR ++E LL GA + +
Sbjct: 51 LHLAAHFGHLEIVEVLLKNG-ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 337 TSDGRTAVAICRR 349
S G T + + +
Sbjct: 110 DSHGFTPLHLAAK 122
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D+ G T LH+AA+R ++E LL GA +
Sbjct: 84 LHLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
AD+N +D G T LH+AA ++E LL GA + S G T + + R
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N KD G T LH+AAR ++E LL GA +
Sbjct: 39 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Query: 337 TSDGRTAVAICRR 349
DG T + + R
Sbjct: 98 DKDGYTPLHLAAR 110
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
AD+N KD G T LH+AAR ++E LL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N KD G T LH+AAR ++E LL GA +
Sbjct: 72 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 337 TSDGRT 342
G+T
Sbjct: 131 DKFGKT 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N KD G T LH+AAR ++E LL GA +
Sbjct: 39 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Query: 337 TSDGRTAVAICRR 349
DG T + + R
Sbjct: 98 DKDGYTPLHLAAR 110
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N KD G T LH+AAR ++E LL GA +
Sbjct: 72 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 337 TSDGRTAVAICRR 349
G+T + R
Sbjct: 131 DKFGKTPFDLAIR 143
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
AD+N KD G T LH+AAR ++E LL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N KD G T LH+AAR ++E LL GA +
Sbjct: 51 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 109
Query: 337 TSDGRTAVAICRR 349
DG T + + R
Sbjct: 110 DKDGYTPLHLAAR 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N KD G T LH+AAR ++E LL GA +
Sbjct: 84 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
AD+N KD G T LH+AAR ++E LL GA + DG T + + R
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + + ++ + +L G AD+N KD G T LH+AA R ++E LL GA +
Sbjct: 84 LHLAAHFGHLEIVEVLLKNG-ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAAYWGHLEIVEVLLKNG-ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Query: 337 TSDGRT 342
+G T
Sbjct: 110 DDNGIT 115
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D G T LH+AA ++E LL GA + + G T
Sbjct: 38 ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGST 82
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LH AA + + K++L+ G AD+N + G T LH+AA+ +++ LL+KGA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 332 CASETTSDGRTAVAICRR 349
+ + DG T + ++
Sbjct: 67 DVNARSKDGNTPEHLAKK 84
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LH AA + ++ K +L G AD+N + G T H+A + +++ L +KGA
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N +DA G T LH+AA R ++E LL GA +
Sbjct: 84 LHLAADNGHLEIVEVLLKYG-ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA +P++ + +L G AD+N +D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAAWIGHPEIVEVLLKHG-ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ 109
Query: 337 TSDGRTAVAIC 347
+ G T + +
Sbjct: 110 DAYGLTPLHLA 120
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAIC 347
AD+N D +G T LH+AA P ++E LL GA + +DG T + +
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 271 LDDA--FALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLS 328
+DDA LH AA + ++ + +L G AD+N +D GRT LH+AA ++E LL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 329 KGACASETTSDGRTAVAI 346
GA + G+TA I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D G T LH+AA+R ++E LL GA + GRT
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT 82
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 271 LDDA--FALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLS 328
+DDA LH AA + ++ + +L G AD+N D+ GRT LH+AA ++E LL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 329 KGACASETTSDGRTAVAI 346
GA + G+TA I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D G T LH+AA+R ++E LL GA + + S GRT
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + + ++ + +L G AD+N D+ G T LH+AA R V+E LL GA +
Sbjct: 51 LHLAAYFGHLEIVEVLLKNG-ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Query: 337 TSDGRTAVAICRRMTRRKDYIEASKQGQETN 367
+G T + + + + K G + N
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 268 EVTLDDAFA---LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLE 324
+V DD+ LH AA + +V + +L G AD+N D G T LH+AA ++E
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNG-ADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 325 TLLSKGACASETTSDGRTAVAIC 347
LL GA + G+TA I
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDIS 153
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D G T LH+AA ++E LL GA + S G T
Sbjct: 38 ADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVT 82
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AAA + ++ + +L G AD+N D G T LH+AA+ ++E LL GA +
Sbjct: 84 LHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA+ + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAASNGHLEIVEVLLKNG-ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 337 TSDGRTAVAICRR 349
+DG T + + +
Sbjct: 110 DNDGHTPLHLAAK 122
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 271 LDDA--FALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLS 328
+DDA LH AA + ++ + +L G AD+N D GRT LH+AA ++E LL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 329 KGACASETTSDGRTAVAI 346
GA + G+TA I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 35.4 bits (80), Expect = 0.061, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D G T LH+AA+R ++E LL GA + + GRT
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT 82
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 268 EVTLDDAFA---LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLE 324
+V D F LH AA + + ++ + +L G AD+N D+ G T LH+AA+ ++E
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 325 TLLSKGACASETTSDGRTAVAIC 347
LL GA + G+TA I
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDIS 153
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD++ D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHG-ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 337 TSDGRTAVAICRR 349
SDG T + + +
Sbjct: 110 DSDGMTPLHLAAK 122
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
AD+N D G T LH+AA ++E LL GA
Sbjct: 38 ADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LH AA + ++ + +L G AD+N +D G T LH+AA R ++E LL GA
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYG-ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 332 CASETTSDGRTAVAI 346
+ G+TA I
Sbjct: 105 DVNAQDKFGKTAFDI 119
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
AD+N D G T LH+AA+ ++E LL GA
Sbjct: 38 ADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA+ + ++ + +L G AD+N KDA G T L++AA ++E LL GA +
Sbjct: 72 LHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 131 DKFGKTAFDIS 141
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AAA + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 39 LHMAAAVGHLEIVEVLLRNG-ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Query: 337 TSDGRT 342
+ G T
Sbjct: 98 DATGIT 103
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD N D GRT LH+AA ++E LL GA + ++G T
Sbjct: 26 ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTT 70
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 274 AFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACA 333
A ALH AAAY K +L AD N++D GRT LH A V + L+ A
Sbjct: 58 ATALHLAAAYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 334 SET-TSDGRTAVAICRRM 350
+ DG T + + R+
Sbjct: 117 LDARMHDGTTPLILAARL 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA Y + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAADYDHLEIVEVLLKHG-ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Query: 337 TSDGRTAVAI 346
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D +G T LH+AA ++E LL GA + +DG T
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST 82
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA Y + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 84 LHLAALYGHLEIVEVLLKNG-ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA ++E LL GA + T
Sbjct: 51 LHLAAIKGHLEIVEVLLKHG-ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 337 TSDGRT 342
+ G T
Sbjct: 110 DTYGFT 115
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N +D G+T LH+AA + ++E LL GA + G T
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDT 82
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAI 346
AD+N KD G T LH+AAR ++E LL GA + G+TA I
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA Y + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAATYGHLEIVEVLLKHG-ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 337 TSDGRTAVAICRRMTRRKDYIEASKQGQETN 367
+ G T + + M + K G + N
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 84 LHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
AD+N DA G T LH+AA ++E LL GA
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA Y + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAATYGHLEIVEVLLKHG-ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 337 TSDGRTAVAICRRMTRRKDYIEASKQGQETN 367
+ G T + + M + K G + N
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 84 LHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N DA G T LH+AA ++E LL GA + G T
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGST 82
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 274 AFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACA 333
A LH AA + ++ + +L G AD+N KD G T LH+AA ++E LL GA
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHG-ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 334 SETTSDGRTAVAIC 347
+ G+TA I
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 51 LHLAAKTGHLEIVEVLLKYG-ADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAK 109
Query: 337 TSDGRTAVAIC 347
+G T + +
Sbjct: 110 DYEGFTPLHLA 120
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAIC 347
AD+N D G T LH+AA+ ++E LL GA + + G T + +
Sbjct: 38 ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D +G T LH+AA ++E LL GA +
Sbjct: 84 LHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 291 EVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAIC 347
EVL AD+N D G T LH+AA R ++E LL GA + G T + +
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 41 DAEIVVEGKSVVVNRSILSERSQFFHRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGFEAF 100
D I VEG+ +RS+L+ S +FH + DG ++ P+ +V + F
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPE----------EVTVKGF 80
Query: 101 NDILLYLYTG---MTKESPPEVSACVDDACVH 129
++ + YT ++KE+ EV CV+ VH
Sbjct: 81 EPLIQFAYTAKLILSKENVDEVCKCVEFLSVH 112
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N GRT LH+AA ++E LL GA +
Sbjct: 51 LHLAAMLGHLEIVEVLLKNG-ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 337 TSDGRTAVAI 346
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 292 VLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
+L AD+N D G T LH+AA ++E LL GA + T + GRT
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVA 314
ALH AA Y P+V + ++ +G AD+ ++D RG T L +A
Sbjct: 113 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELA 150
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA+R ++E LL GA +
Sbjct: 51 LHLAARVGHLEIVEVLLKNG-ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Query: 337 TSDGRT 342
+ G T
Sbjct: 110 DTIGST 115
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 84 LHLAAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRR 349
AD+N +D G T LH+AAR ++E LL GA + G T + + +
Sbjct: 38 ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVA 314
ALH AA Y P+V + ++ +G AD+ ++D RG T L +A
Sbjct: 114 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELA 151
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D ALH+A + + ++ + +L +G+ +N KD G + LH+AA +++ LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 332 CASETTSDGRT 342
+ +G T
Sbjct: 98 QVNAVNQNGCT 108
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
+A A+H AAA N K+ +L A N++D G T LH+A + + L+S+GA
Sbjct: 139 EATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D ALH+A + + ++ + +L +G+ +N KD G + LH+AA +++ LL KGA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 332 CASETTSDGRT 342
+ +G T
Sbjct: 99 QVNAVNQNGCT 109
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
+A A+H AAA N K+ +L A N++D G T LH+A + + L+S+GA
Sbjct: 140 EATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
L AA + + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 84 LRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N +DA G T LH+AA ++E LL GA + G T
Sbjct: 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT 82
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T L +AA ++E LL GA +
Sbjct: 51 LHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 337 TSDGRT 342
+G T
Sbjct: 110 DMEGHT 115
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA ++E LL GA +
Sbjct: 84 LHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ 142
Query: 337 TSDGRTAVAIC 347
G+TA I
Sbjct: 143 DKFGKTAFDIS 153
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
LH AA + ++ + +L G AD++ D G T LH+AA ++E LL GA
Sbjct: 51 LHLAAVSGHLEIVEVLLKHG-ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASE 335
ALH AA Y K +L AD N++D GRT LH A V + L+ A +
Sbjct: 28 ALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 336 T-TSDGRTAVAICRRM 350
DG T + + R+
Sbjct: 87 ARMHDGTTPLILAARL 102
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 286 PKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
P V + + G + N D G T LH+AAR + LL A A+ + GRT
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASE 335
ALH AA Y K +L AD N++D GRT LH A V + L+ A +
Sbjct: 61 ALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 336 T-TSDGRTAVAICRRM 350
DG T + + R+
Sbjct: 120 ARMHDGTTPLILAARL 135
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 286 PKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
P V + + G + N D G T LH+AAR + LL A A+ + GRT
Sbjct: 37 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 93
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASE 335
ALH AA Y K +L AD N++D GRT LH A V + L+ A +
Sbjct: 60 ALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 336 T-TSDGRTAVAICRRM 350
DG T + + R+
Sbjct: 119 ARMHDGTTPLILAARL 134
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 286 PKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
P V + + G + N D G T LH+AAR + LL A A+ + GRT
Sbjct: 36 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D ALH+A + + ++ + +L +G+ +N KD G + LH+AA +++ LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 332 CASETTSDGRT 342
+ +G T
Sbjct: 98 HVNAVNQNGCT 108
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
DA A+H AAA N K+ +L A N++D G T LH+A + + L+++GA
Sbjct: 139 DATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D ALH+A + + ++ + +L +G+ +N KD G + LH+AA +++ LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 332 CASETTSDGRT 342
+ +G T
Sbjct: 98 HVNAVNQNGCT 108
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
DA A+H AAA N K+ +L A N++D G T LH+A + + L+++GA
Sbjct: 139 DATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N DA G T LH+ A ++E LL GA +
Sbjct: 51 LHLAAMNDHLEIVEVLLKNG-ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 337 TSDGRTAVAI 346
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N +D G T LH+AA ++E LL GA + + G T
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET 82
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
LH AAA ++ + +L G AD+N D+ G T LH+AA ++E LL GA
Sbjct: 43 LHLAAANGQLEIVEVLLKNG-ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + ++ + +L G AD+N D G T LH+AA + ++E LL GA +
Sbjct: 76 LHLAAYDGHLEIVEVLLKHG-ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Query: 337 TSDGRTAVAIC 347
+ G TA I
Sbjct: 135 DALGLTAFDIS 145
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
AD+N D G T LH+AA + ++E LL GA + + S G T
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGIT 74
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAI 346
AD+ KD G T LH+AAR V++ LL GA + G+TA I
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 276 ALHYAAAYCNPK---VFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC 332
ALH A A +PK V + +L G A++N K+ T LHVAA R V+E L GA
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 333 ASETTSDGRTAV 344
+ S G+TA+
Sbjct: 273 MNALDSLGQTAL 284
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC 332
LH AA Y ++ + +L G AD++ KD G LH A V E LL GAC
Sbjct: 62 LHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH AA + V EVL+ A +N D+ G+T LH AA LLS G+ S
Sbjct: 251 LHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 337 TSDGRTAVAI 346
+ G TA +
Sbjct: 310 SLQGFTAAQM 319
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAI 346
AD+ KD G T LH+AAR V++ LL GA G+TA I
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
L+ A A+ + ++ + +L G AD+N DA G T LH+AA + E LL GA +
Sbjct: 51 LYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 337 TSDGRTAVAI 346
G+TA I
Sbjct: 110 DKFGKTAFDI 119
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 41 DAEIVVEGKSVVVNRSILSERSQFFHRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGFEAF 100
D ++VEG+ +RS+L+ S +FH + D ++ P+ +V + F
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPE----------EVTVKGF 87
Query: 101 NDILLYLYTG---MTKESPPEVSACVDDACVH 129
++ + YT ++K++ EV CV+ VH
Sbjct: 88 EPLIQFAYTAKLILSKDNVDEVCRCVEFLSVH 119
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDAR-GRTVLHVAARRKEPAVLETLLSKG 330
D LH A + + ++ + + + G ADLN + GRT LH+A + +VLE LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 331 ACASETTSDGRTAVA 345
A + GRT +
Sbjct: 216 ADPTARMYGGRTPLG 230
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 269 VTLDDAFALHYAAAYCNPKVFKEVLNM--GLADLNLKDARGRTVLHVAARRKEPAVLETL 326
VT D ALH A + + +L G L+L++ G+T LH+AA E + +E L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 327 LSKGACASETTSDGRTAVAI-CR 348
+ GA G TA+ + CR
Sbjct: 65 YAAGAGVLVAERGGHTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDAR-GRTVLHVAARRKEPAVLETLLSKG 330
D LH A + + ++ + + + G ADLN + GRT LH+A + +VLE LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 331 ACASETTSDGRTAVA 345
A + GRT +
Sbjct: 216 ADPTARMYGGRTPLG 230
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 269 VTLDDAFALHYAAAYCNPKVFKEVLNM--GLADLNLKDARGRTVLHVAARRKEPAVLETL 326
VT D ALH A + + +L G L+L++ G+T LH+AA E + +E L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 327 LSKGACASETTSDGRTAVAI-CR 348
+ GA G TA+ + CR
Sbjct: 65 YAAGAGVLVAERGGHTALHLACR 87
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASE 335
ALH AA Y K +L AD ++D GRT LH A V + LL A +
Sbjct: 25 ALHLAARYSRSDAAKRLLEAS-ADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 336 T-TSDGRTAVAICRRM 350
DG T + + R+
Sbjct: 84 ARMHDGTTPLILAARL 99
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC 332
D LH AA++ + + +++L AD+N + G LH A + V E L++ GA
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
Query: 333 ASETTSDGRTAVAICRRMTRRKDYIEASKQGQETNK 368
S G V + R A K GQ N+
Sbjct: 126 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 161
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 299 DLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
DLN D G + LH A R AV+E L+ +GA
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 58
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 275 FALHYAAAYCN----PKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKG 330
LH A N P V + N G L+ K A G T LH AA +P L+ LL
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGG--HLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 331 ACASETTSDGRTAVAICRRMTRR--KDYIEASKQG 363
A G TA+ I R+ + ++ +E ++ G
Sbjct: 231 ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D ALHYAA Y P K +L G A + + G T L + AR+K E LL +
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDI-ARKKHHKECEELLEQAQ 263
Query: 332 CAS 334
+
Sbjct: 264 AGT 266
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 300 LNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRRMTRR--KDYI 357
L+ K A G T LH AA +P L+ LL A G TA+ I R+ + ++ +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Query: 358 EASKQG 363
E ++ G
Sbjct: 279 EQAQAG 284
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 272 DDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D ALHYAA Y P K +L G A + + G T L + AR+K E LL +
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDI-ARKKHHKECEELLEQAQ 282
Query: 332 CAS 334
+
Sbjct: 283 AGT 285
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACA-SETTSDGRTAVAICRRMTRRK 354
AD+N++ RG+T L +A +K +++ LL + ++T SDG+TA+ + + +K
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC 332
D LH AA++ + + +++L AD+N + G LH A + V E L++ GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Query: 333 ASETTSDGRTAVAICRRMTRRKDYIEASKQGQETNK 368
S G V + R A K GQ N+
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 299 DLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
DLN D G + LH A R AV+E L+ +GA
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACA-SETTSDGRTAVAICRRMTRRK 354
AD+N++ RG+T L +A +K +++ LL + ++T SDG+TA+ + + +K
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 287
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 303 KDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDG 340
KDA G T LH+AA++ V++ LLS G DG
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
LH AA + +V + +L+ G D+N +D G T + A K +++ LLSKG+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASE 335
ALHYAA N + K ++ ++ + +D G+T + +AA+ V+ L+ +GA
Sbjct: 282 ALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEA 341
Query: 336 TTSDGRTAVAICR 348
+ TA + +
Sbjct: 342 VDATDHTARQLAQ 354
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 296 GLADLNLKDARGRTVLHVAARRKEPAVLETLLS-KGACASETTSDGRTAVAICRRMTR 352
G A + + +GRT LH AA+ +++ L+ KG+ + DG+T + + + R
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 273 DAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
D LH AA+ + + + +L G AD+N KD T LH A V+E L+ GA
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDA-RGRTVLHVAARRKEPAVLETLLSKGACASE 335
LH A+ + + + ++++G AD+N ++ GRT LH+A + P ++ LL GA +
Sbjct: 121 LHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 336 TTSDG 340
T G
Sbjct: 180 VTYQG 184
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARR 317
LH A P++ + +L G D L+D RG T LH+A +
Sbjct: 49 LHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQ 88
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 268 EVTLDDAFALHYAAAYCNPKVFKEVLNM---GLADLNLKDARGRTVLHVAARRKEPAVLE 324
++T D LH A + + EV+ LA LN ++ +T LH+A +P + E
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 325 TLLSKG 330
LL G
Sbjct: 63 ALLGAG 68
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDA-RGRTVLHVAARRKEPAVLETLLSKGACASE 335
LH A+ + + + ++++G AD+N ++ GRT LH+A + P ++ LL GA +
Sbjct: 118 LHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 176
Query: 336 TTSDG 340
T G
Sbjct: 177 VTYQG 181
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 39 WLDAEIVVEGKSVVVNRSILSERSQFFHRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGFE 98
+ D +VV+G + +R++L+ S +F LFN N S P V +
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN--NSRSAVVELP----------AAVQPQ 80
Query: 99 AFNDILLYLYTG 110
+F IL + YTG
Sbjct: 81 SFQQILSFCYTG 92
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 269 VTLDDAFALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLS 328
+D ALH A N + K ++ G A++N D G LH AA + E L+S
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127
Query: 329 KGACASETTSDGRTAVAI 346
+GA S+G T + I
Sbjct: 128 QGAHVGAVNSEGDTPLDI 145
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAA 315
ALH AAA +V K +L D+N+KD G T LH AA
Sbjct: 202 ALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAA 240
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 41 DAEIVVEGKSVVVNRSILSERSQFFHRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGFEAF 100
D I+VEG+ +RS+L+ SQ+F +LF G+V + + Y + V EA
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLF---TSGAVVDQQNVYEI------DFVSAEAL 77
Query: 101 NDILLYLYTGMTKESPPEVS 120
++ + YT S V
Sbjct: 78 TALMDFAYTATLTVSTANVG 97
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LHYAA C E L + AD+N D T L A + ++ LLSKGA +
Sbjct: 44 LHYAAD-CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 337 TSDGRTA 343
DG TA
Sbjct: 103 GPDGLTA 109
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LHYAA C E L + AD+N D T L A + ++ LLSKGA +
Sbjct: 39 LHYAAD-CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 337 TSDGRTAV 344
DG TA+
Sbjct: 98 GPDGLTAL 105
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 41 DAEIVVEGKSVVVNRSILSERSQFFHRLFN 70
D I+VEG+ +RS+L+ SQ+F +LF
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLFT 66
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 283 YCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
+ +P V E+L G A N++DA G + +H AAR L+ L+ GA + S G
Sbjct: 51 FGSPAVALELLKQG-ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 109
Query: 343 AVAICRR 349
+ + R
Sbjct: 110 PIHLAIR 116
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 283 YCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRT 342
+ +P V E+L G A N++DA G + +H AAR L+ L+ GA + S G
Sbjct: 53 FGSPAVALELLKQG-ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 111
Query: 343 AVAICRR 349
+ + R
Sbjct: 112 PIHLAIR 118
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 41 DAEIVVEGKSVVVNRSILSERSQFFHRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGFEAF 100
D ++VE + +++ILS S +FH+LF++ +V + E F
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------------QVVELSFIRAEIF 80
Query: 101 NDILLYLYT 109
+IL Y+Y+
Sbjct: 81 AEILNYIYS 89
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 41 DAEIVVEGKSVVVNRSILSERSQFFHRLFNLRNDGSVSEGKPKYLLTDLVPHGKVGFEAF 100
D ++VE + +++ILS S +FH+LF++ +V + E F
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------------QVVELSFIRAEIF 78
Query: 101 NDILLYLYT 109
+IL Y+Y+
Sbjct: 79 AEILNYIYS 87
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 28 GPEICSDPGEPWLDAEIVVEGKSVVVNRSILSERSQFFH 66
GP+IC PG + +GK+V++N+ I S+ +F H
Sbjct: 119 GPDICG-PGTKKVHVIFNYKGKNVLINKDIRSKDDEFTH 156
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 195 QRIARSNLDNVCLEKELPDEVSSEIKS 221
Q + ++ +DNV LE++ PDEV I++
Sbjct: 19 QLLHKAGIDNVILERQTPDEVLGRIRA 45
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 28 GPEICSDPGEPWLDAEIVVEGKSVVVNRSILSERSQFFH 66
GP+IC PG + +GK+V++N+ I S+ +F H
Sbjct: 119 GPDICG-PGTKKVHVIFNYKGKNVLINKDIRSKDDEFTH 156
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 276 ALHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGA 331
AL++A + + + + +LN ++ G T LH AA + +++ LL+KGA
Sbjct: 109 ALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 285 NPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLL 327
NP++ + +L G A+ +LKD G V+H AAR + L+TLL
Sbjct: 49 NPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGQLDTLQTLL 90
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC-ASETTSDGRTAVAICRRMTRRK-- 354
AD+N++D G LH+AA+ V+E L+ A G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 355 DYIEASKQGQETN 367
++A+ G TN
Sbjct: 154 SLMQANGAGGATN 166
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 28 GPEICSDPGEPWLDAEIVVEGKSVVVNRSILSERSQFFH 66
GP+IC PG + +GK+V++N+ I S+ +F H
Sbjct: 119 GPDICG-PGTKKVHVIFNYKGKNVLINKDIRSKDDEFTH 156
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 299 DLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTSDGRTAVAICRRMTRRK 354
D+N+ D G T L A R +E LL++GA + G T + + + RK
Sbjct: 94 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 279 YAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASETTS 338
YA + + ++ +L G A +N + +G T LH A K V+E LL GA
Sbjct: 158 YACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
Query: 339 DGRTAV 344
RTAV
Sbjct: 217 RQRTAV 222
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACASET 336
LH+A + + +++ G AD +L D G + +H+AA+ +++ L++KG
Sbjct: 80 LHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 337 TSDGRTAVAICRRMTRRKD 355
+G T + T D
Sbjct: 139 DQNGMTPLMWAAYRTHSVD 157
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 285 NPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLL 327
NP++ + +L G A+ +LKD G V+H AAR L+TLL
Sbjct: 49 NPEIARRLLLRG-ANPDLKDRTGNAVIHDAARAGFLDTLQTLL 90
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC-ASETTSDGRTAVAICRRMTRRK-- 354
AD+N++D G LH+AA+ V+E L+ A G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 355 DYIEASKQGQETN 367
++A+ G TN
Sbjct: 154 SLMQANGAGGATN 166
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 277 LHYAAAYCNPKVFKEVLNMGLADLNLKDARGRTVLHVAARRKEPAVLETLLSKGACAS-- 334
LH A P V + ++ G + + L D G+T H+A + P L LL A +
Sbjct: 50 LHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 335 --ETTSDGRTAVAIC 347
DG TA+ +
Sbjct: 109 LEARNYDGLTALHVA 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC-ASETTSDGRTAVAICRRMTRRK-- 354
AD+N++D G LH+AA+ V+E L+ A G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 355 DYIEASKQGQETN 367
++A+ G TN
Sbjct: 154 SLMQANGAGGATN 166
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 298 ADLNLKDARGRTVLHVAARRKEPAVLETLLSKGAC-ASETTSDGRTAVAICRRMTRRK-- 354
AD+N++D G LH+AA+ V+E L+ A G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 355 DYIEASKQGQETN 367
++A+ G TN
Sbjct: 154 SLMQANGAGGATN 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,537,749
Number of Sequences: 62578
Number of extensions: 440202
Number of successful extensions: 1370
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 225
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)