Query 014276
Match_columns 427
No_of_seqs 247 out of 1651
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 1.2E-85 2.5E-90 674.0 38.9 418 1-427 1-422 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 1.6E-69 3.6E-74 541.9 35.7 317 87-426 5-321 (322)
3 PLN02857 octaprenyl-diphosphat 100.0 1.1E-69 2.3E-74 556.3 34.1 323 85-427 94-416 (416)
4 TIGR02748 GerC3_HepT heptapren 100.0 2.3E-69 5E-74 540.5 34.5 315 85-427 2-319 (319)
5 CHL00151 preA prenyl transfera 100.0 1.8E-68 4E-73 534.9 34.8 319 85-426 4-322 (323)
6 PRK10888 octaprenyl diphosphat 100.0 4.4E-68 9.6E-73 531.6 35.3 314 88-427 6-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 1.8E-67 3.9E-72 527.2 35.0 317 88-427 3-322 (322)
8 KOG0776 Geranylgeranyl pyropho 100.0 6.4E-64 1.4E-68 499.1 31.4 313 85-425 64-384 (384)
9 PRK10581 geranyltranstransfera 100.0 4.6E-61 1E-65 476.1 30.9 279 89-427 4-299 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 4.9E-56 1.1E-60 432.3 28.0 254 111-425 3-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 4E-55 8.7E-60 426.2 14.2 249 116-386 3-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1.6E-42 3.6E-47 331.0 25.8 235 131-425 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 7.3E-38 1.6E-42 290.0 21.5 269 112-404 21-293 (322)
14 KOG0711 Polyprenyl synthetase 100.0 6.1E-33 1.3E-37 268.3 27.9 298 112-427 38-347 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 4.3E-23 9.4E-28 192.5 27.5 226 168-422 13-241 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.7 0.00074 1.6E-08 64.1 13.8 102 166-276 34-136 (212)
17 TIGR01559 squal_synth farnesyl 96.1 0.082 1.8E-06 53.8 12.8 151 231-404 100-250 (336)
18 PLN02632 phytoene synthase 96.1 0.14 3.1E-06 52.0 14.1 139 239-404 140-280 (334)
19 PF00494 SQS_PSY: Squalene/phy 95.8 0.23 4.9E-06 48.3 13.9 141 236-404 88-229 (267)
20 cd00683 Trans_IPPS_HH Trans-Is 95.6 0.23 4.9E-06 48.5 12.8 136 239-404 93-228 (265)
21 TIGR03465 HpnD squalene syntha 95.5 0.33 7.2E-06 47.5 13.9 135 239-404 85-219 (266)
22 TIGR03464 HpnC squalene syntha 95.4 0.49 1.1E-05 46.3 14.8 134 240-404 87-220 (266)
23 cd00687 Terpene_cyclase_nonpla 93.2 4.6 9.9E-05 39.8 16.2 90 230-321 127-221 (303)
24 PRK12884 ubiA prenyltransferas 88.3 12 0.00027 36.6 13.7 157 168-348 40-199 (279)
25 COG1562 ERG9 Phytoene/squalene 85.2 30 0.00065 34.5 14.6 137 238-404 102-238 (288)
26 cd00868 Terpene_cyclase_C1 Ter 83.4 44 0.00095 32.1 16.3 89 231-321 121-215 (284)
27 PRK12882 ubiA prenyltransferas 82.2 20 0.00044 35.1 11.9 57 169-226 42-101 (276)
28 PRK09573 (S)-2,3-di-O-geranylg 71.1 67 0.0015 31.5 12.1 56 169-225 41-99 (279)
29 COG0382 UbiA 4-hydroxybenzoate 65.0 1.5E+02 0.0032 29.2 15.3 159 167-350 49-213 (289)
30 PRK07566 bacteriochlorophyll/c 63.7 91 0.002 31.3 11.5 51 172-223 72-125 (314)
31 TIGR01474 ubiA_proteo 4-hydrox 62.5 1.4E+02 0.003 29.4 12.4 57 169-226 44-105 (281)
32 PF01040 UbiA: UbiA prenyltran 59.7 1.6E+02 0.0034 27.8 15.3 147 176-346 34-188 (257)
33 PRK12883 ubiA prenyltransferas 58.6 1.9E+02 0.004 28.3 12.9 51 172-223 44-97 (277)
34 PRK12878 ubiA 4-hydroxybenzoat 56.0 2.1E+02 0.0045 28.8 12.5 57 169-226 76-137 (314)
35 PLN00012 chlorophyll synthetas 52.7 1.2E+02 0.0027 31.4 10.5 49 169-218 127-178 (375)
36 TIGR02748 GerC3_HepT heptapren 52.4 1.6E+02 0.0036 29.5 11.2 48 285-344 55-102 (319)
37 TIGR02056 ChlG chlorophyll syn 52.2 2.1E+02 0.0046 28.5 11.9 50 172-222 61-113 (306)
38 PF06783 UPF0239: Uncharacteri 51.7 17 0.00038 29.5 3.1 22 292-313 15-36 (85)
39 PRK10888 octaprenyl diphosphat 49.8 2.9E+02 0.0063 27.9 13.6 50 283-344 54-103 (323)
40 TIGR01475 ubiA_other putative 44.3 2.1E+02 0.0046 28.0 10.4 50 169-219 40-94 (282)
41 PF03936 Terpene_synth_C: Terp 44.2 2.5E+02 0.0054 26.6 10.7 86 233-319 138-228 (270)
42 cd00684 Terpene_cyclase_plant_ 40.9 5E+02 0.011 28.1 15.5 92 228-321 352-449 (542)
43 cd00685 Trans_IPPS_HT Trans-Is 38.8 3.6E+02 0.0079 25.9 10.9 48 285-344 30-78 (259)
44 PF00348 polyprenyl_synt: Poly 37.9 3.8E+02 0.0082 25.8 11.2 53 280-344 20-72 (260)
45 PRK12871 ubiA prenyltransferas 37.7 4.3E+02 0.0092 26.4 12.7 30 195-225 85-114 (297)
46 PRK13591 ubiA prenyltransferas 35.3 4.9E+02 0.011 26.3 12.5 31 307-348 193-223 (307)
47 PRK12870 ubiA 4-hydroxybenzoat 34.1 4.7E+02 0.01 25.8 13.7 56 170-226 51-111 (290)
48 PRK10581 geranyltranstransfera 33.3 1.6E+02 0.0036 29.3 7.6 61 168-229 206-278 (299)
49 PRK12872 ubiA prenyltransferas 32.7 66 0.0014 31.4 4.7 33 305-348 173-205 (285)
50 PRK12848 ubiA 4-hydroxybenzoat 32.4 4.9E+02 0.011 25.5 11.7 53 171-224 48-105 (282)
51 TIGR01476 chlor_syn_BchG bacte 29.3 3.2E+02 0.007 26.7 8.9 149 170-342 43-199 (283)
52 PRK13105 ubiA prenyltransferas 29.1 85 0.0018 31.2 4.7 60 274-344 140-200 (282)
53 PRK06080 1,4-dihydroxy-2-napht 26.2 3.6E+02 0.0079 26.4 8.7 87 260-346 1-92 (293)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=1.2e-85 Score=673.95 Aligned_cols=418 Identities=77% Similarity=1.080 Sum_probs=381.6
Q ss_pred ChhhhchhhhhcccccCcCccccccCCCCccc----cccchhhhccCCccccccccccccccccccccCCcccccCCCcc
Q 014276 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSG----ASHSAAAAAADSSVKVLGCREAYSWSLPALHGIRHQIHHQSSSV 76 (427)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~~~w~~~~~~~~~~~~~~~~~~~ 76 (427)
|+|+|+++||+ +.+.+++||+.+.+.+.+ ..+.+.++++.+++|+++||.+++|+++.+|.++++++++..+.
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (422)
T PLN02890 1 MLLSRRVARIS---ATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGTYSVSSRWLHGFQYQVRHQSSSL 77 (422)
T ss_pred CCcchHHHHHh---ccccccccchhhhhhhcccccccCCCCcccccCCCccccccccceeechhhhhhhhhhchhcccch
Confidence 89999999888 778889999999664333 33566778889999999999999999999999999999988888
Q ss_pred ccccccccccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCch
Q 014276 77 IEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVE 156 (427)
Q Consensus 77 ~~~~~~~~~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~ 156 (427)
+++ ..++|+++.++|+.|+++|++.+.+..|.+.+++.|++..|.+|||+||+|++++++++|.+.++..+++..
T Consensus 78 ~~~-----~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~ 152 (422)
T PLN02890 78 VEE-----QLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVL 152 (422)
T ss_pred hhh-----HHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccc
Confidence 888 899999999999999999999999999999999999998777799999999999999998643211000000
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 014276 157 DALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTL 236 (427)
Q Consensus 157 ~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ 236 (427)
+..+.+++++++.+|+++||||+||||||||||++++|||+||+|.+||++ .|||+||||+++|+..++..++.+++..
T Consensus 153 ~~~~~~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~-~AIlaGD~Lla~A~~~l~~~~~~~~~~~ 231 (422)
T PLN02890 153 DIVASELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK-LSVLAGDFLLSRACVALAALKNTEVVSL 231 (422)
T ss_pred hhhccchhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChH-HHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 111234556789999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014276 237 LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 316 (427)
Q Consensus 237 ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDll 316 (427)
+++++..+++||++|+.+..+...++++|++++++|||+||++||++||+++|++++..+.+++||+++|+||||+||++
T Consensus 232 ~s~a~~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiL 311 (422)
T PLN02890 232 LATAVEHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVL 311 (422)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887778899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014276 317 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396 (427)
Q Consensus 317 D~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 396 (427)
||+|+++.+|||.++||++||+|+|+|+|++..+++..++.....+++++++++++|.++|++++|++++++|.++|.+.
T Consensus 312 D~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~ 391 (422)
T PLN02890 312 DFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAA 391 (422)
T ss_pred hhcCChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888889998888888999999999999999999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 397 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 397 L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
|+.||+++.+++..+++.|..|++++++|+|
T Consensus 392 L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 392 IESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 9999999876777789999999999999987
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=1.6e-69 Score=541.90 Aligned_cols=317 Identities=45% Similarity=0.710 Sum_probs=299.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 014276 87 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (427)
Q Consensus 87 ~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (427)
+.+..+.+++..|++.+.+.+.+.+|.+.++.+|++..| |||+||.|++++++++|.... ..+.
T Consensus 5 ~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~--------------~~~~ 68 (322)
T TIGR02749 5 SLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQE--------------LTPR 68 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCcc--------------ccHH
Confidence 456788999999999999999999999999999999988 999999999999999875321 1136
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014276 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 246 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~ 246 (427)
.+.+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|+..++..++.++++.+++++.++++
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD~s~~RRG~pt~h~~~G~~-~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 147 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVIDESDTRRGIETVHSLFGTR-VAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAE 147 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccC
Q 014276 247 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 326 (427)
Q Consensus 247 Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~G 326 (427)
||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 148 Gq~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~G 227 (322)
T TIGR02749 148 GEIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLG 227 (322)
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhC
Confidence 99999987777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014276 327 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 406 (427)
Q Consensus 327 K~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 406 (427)
||.++||++||+|+|+++++++.|.+.+++.....+++++++++++|.++|++++|+.++++|.++|.+.|+.+|+++
T Consensus 228 K~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~-- 305 (322)
T TIGR02749 228 KPAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP-- 305 (322)
T ss_pred CChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH--
Confidence 999999999999999999999888888888888888899999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHHhcc
Q 014276 407 DVTKSRRALLDLTHRVITRN 426 (427)
Q Consensus 407 ~~~~~r~~L~~l~~~v~~R~ 426 (427)
.++.|..|++++++|+
T Consensus 306 ----~~~~L~~l~~~~~~R~ 321 (322)
T TIGR02749 306 ----PREALKELVHFVLSRL 321 (322)
T ss_pred ----HHHHHHHHHHHHHhcC
Confidence 8999999999999996
No 3
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.1e-69 Score=556.35 Aligned_cols=323 Identities=41% Similarity=0.664 Sum_probs=301.8
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
..+.+..+.++++.|++.|++.+....|.+.+++.|++..| |||+||.|+++++++++..... .+..
T Consensus 94 ~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~~~ 160 (416)
T PLN02857 94 LSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KELT 160 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------Ccch
Confidence 44557788999999999999999999999999999999988 9999999999999998631110 0112
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
++.+.+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|+..++..+++++++.+++++..+
T Consensus 161 ~~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~-~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l 239 (416)
T PLN02857 161 TEHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTR-VAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDF 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcc-eeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999 999999999999999999998899999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
++||++|+.+..+...++++|++++++|||+||+++|++||+++|++++..+.+++||++||+||||+||++||+++++.
T Consensus 240 ~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~ 319 (416)
T PLN02857 240 ASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQ 319 (416)
T ss_pred HhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 99999999887777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
+|||.++||++||+|+|+|+|+++.|++.+++...+.+++++++++++|.++|++++|++++++|.++|++.|+.||+++
T Consensus 320 ~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~ 399 (416)
T PLN02857 320 LGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGA 399 (416)
T ss_pred hCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999888999999888888899999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 014276 405 DEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 405 ~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.++.|..|++++++|.+
T Consensus 400 ------~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 400 ------FRSSLEDMVDYNLERIY 416 (416)
T ss_pred ------HHHHHHHHHHHHHhccC
Confidence 89999999999999974
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=2.3e-69 Score=540.49 Aligned_cols=315 Identities=29% Similarity=0.496 Sum_probs=292.1
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
+.+.++.+.++++.|++.|++.+.+..|.+.+++.|++..| |||+||.|++++++++|.+.
T Consensus 2 ~~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~~----------------- 62 (319)
T TIGR02748 2 LADIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYDL----------------- 62 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCCH-----------------
Confidence 34567889999999999999999888889999999999988 99999999999999876532
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
+.+..+|+++||||+||||||||+|+|++|||+||+|.+||++ .|||+||||+++|++.++..++++++..+++++..+
T Consensus 63 ~~~~~~A~aiEliH~asLiHDDI~D~s~~RRg~pt~~~~~G~~-~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 141 (319)
T TIGR02748 63 DAIKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKSKWGNR-IAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEV 141 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCHHHHhChH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999 999999999999999999998899999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
++||++|+.+..+...++++|++++++|||+||++||.+|++++|++++.++.+++||+++|+||||+||++||+++++.
T Consensus 142 ~~Gq~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~ 221 (319)
T TIGR02748 142 CRGEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEE 221 (319)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHh
Confidence 99999999887777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCc---HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 401 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~---~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 401 (427)
+|||.++||++||+|+|++++++..+ .+..++... ++++++.++++|.++|++++|+.++++|.++|.+.|+.||
T Consensus 222 ~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp 299 (319)
T TIGR02748 222 LGKPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEET--TAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLP 299 (319)
T ss_pred hCCChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcCC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998543 233444332 5678999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 402 ENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 402 ~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+++ .++.|..+++++++|++
T Consensus 300 ~~~------~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 300 DGR------AKKPLQEIAKYIGKRKY 319 (319)
T ss_pred CCH------HHHHHHHHHHHHHhccC
Confidence 988 89999999999999975
No 5
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.8e-68 Score=534.85 Aligned_cols=319 Identities=40% Similarity=0.645 Sum_probs=299.3
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
..+.+..+.+++..|++.|++.+....|.+.++++|++..| |||+||.|++++++++|++.+. .
T Consensus 4 ~~~~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~~--------------~ 67 (323)
T CHL00151 4 NSNLLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNMEI--------------K 67 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCccc--------------c
Confidence 34567889999999999999999888899999999999988 9999999999999999874321 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
..+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|+..++...++++++.+++++..+
T Consensus 68 ~~~~~~A~aiEllH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l 146 (323)
T CHL00151 68 TSQQRLAEITEIIHTASLVHDDVIDECSIRRGIPTVHKIFGTK-IAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDF 146 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCCc-chhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 2567899999999999999999999999999999999999999 999999999999999999988889999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
++||++|.....+...++++|++++.+|||+||++||.+||+++|++++..+.+++||+++|+||||+||++||+++++.
T Consensus 147 ~~G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~ 226 (323)
T CHL00151 147 AEGEIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTES 226 (323)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhh
Confidence 99999998776666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
+|||.|+||++||+|+|++++++..+.+.+++.....+++++++++++|.++|++++|+.++++|.++|.+.|+.||+++
T Consensus 227 ~GK~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~ 306 (323)
T CHL00151 227 LGKPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSS 306 (323)
T ss_pred hCCCchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999888888888777778889999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHHHhcc
Q 014276 405 DEDVTKSRRALLDLTHRVITRN 426 (427)
Q Consensus 405 ~~~~~~~r~~L~~l~~~v~~R~ 426 (427)
.++.|..+++++++|+
T Consensus 307 ------~~~~L~~l~~~~~~R~ 322 (323)
T CHL00151 307 ------AKDSLIEIANFIINRL 322 (323)
T ss_pred ------HHHHHHHHHHHHHhcc
Confidence 8999999999999996
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=4.4e-68 Score=531.59 Aligned_cols=314 Identities=32% Similarity=0.510 Sum_probs=289.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 014276 88 PFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (427)
Q Consensus 88 ~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (427)
.+..+..+++.|++.|.+.+.+..|.+.++..|++..| |||+||.|++++++++|++. +..
T Consensus 6 ~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~~-----------------~~~ 66 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQG-----------------NAH 66 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCCh-----------------HHH
Confidence 46788999999999999999988899999999999988 99999999999999987642 257
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014276 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 247 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~G 247 (427)
+.+|+++||||+||||||||+|++++|||+||+|.+||++ .|||+||||+++|+..++..++.+++..+++++..+++|
T Consensus 67 ~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~~~G~~-~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 145 (323)
T PRK10888 67 VTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNA-ASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEG 145 (323)
T ss_pred HHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHHHhCcc-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCC
Q 014276 248 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 327 (427)
Q Consensus 248 q~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 327 (427)
|++|+.+..+...++++|++++.+|||+||++||.+|++++|.+++.++.++.||+++|+||||+||++||+++++.+||
T Consensus 146 q~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK 225 (323)
T PRK10888 146 EVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGK 225 (323)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCC
Confidence 99999877666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCcccHHHHHHhhhC-cHHHHHHHccc---CChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014276 328 GSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGF---EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 403 (427)
Q Consensus 328 ~~~~Dl~eGk~TlPvl~Al~~~-~~l~~~l~~~~---~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 403 (427)
|.++||++||+|+|++++++.. +..++.+.... ..+++++.++++|.++|+++++++++++|.++|.+.|+.+|++
T Consensus 226 ~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~ 305 (323)
T PRK10888 226 NVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDT 305 (323)
T ss_pred CchhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999863 33333333222 2346789999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014276 404 NDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 404 ~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+ .++.|..+++++++|++
T Consensus 306 ~------~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 306 P------WREALIGLAHIAVQRDR 323 (323)
T ss_pred H------HHHHHHHHHHHHHhCcC
Confidence 8 89999999999999974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-67 Score=527.20 Aligned_cols=317 Identities=33% Similarity=0.516 Sum_probs=290.3
Q ss_pred chhhHHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 014276 88 PFSLVADELSILAKRLRSMVV-AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (427)
Q Consensus 88 ~~~~i~~el~~v~~~l~~~~~-~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (427)
++..+.++++.|++.|.+.+. +.++.+.++..|.+.+| |||+||.|++++++++|.+... + .+.
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~------------~-~~~ 67 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET------------G-GND 67 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc------------c-hhh
Confidence 457788999999999999999 78889999999999999 9999999999999999832210 0 246
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHH
Q 014276 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN--TEVVTLLATVVEHL 244 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~--~~v~~~ls~~~~~l 244 (427)
+..+|++|||||++|||||||||+|++|||+||+|.+||+. .|||+||||+++||+++++.++ +.++..+++++..|
T Consensus 68 ~~~~aaavEliH~~SLiHDDvmD~s~~RRG~pt~~~~~g~~-~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~ 146 (322)
T COG0142 68 ALDLAAAIELIHTASLIHDDLMDDDDLRRGKPTVHAKFGEA-TAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGL 146 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccCCCCCchhHhccH-HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999 9999999999999999999988 89999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
|+||.+|+.+..+. .++++|++|+++|||+||+++|.+||+++|++++..+.++.||+++|+||||+||+|||+++++.
T Consensus 147 ~~GQ~lDl~~~~~~-~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~ 225 (322)
T COG0142 147 CGGQALDLAFENKP-VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEE 225 (322)
T ss_pred HHhHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHH
Confidence 99999999998765 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
+|||+|+|+++||+|+|++++++..++-...+........+++++++++.++|+++++..++..|.++|.+.|+.+|+++
T Consensus 226 lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~ 305 (322)
T COG0142 226 LGKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE 305 (322)
T ss_pred hCCCcchHHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999754321133333333339999999999999999999999999999999999999777
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 014276 405 DEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 405 ~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.++.|.++++++++|++
T Consensus 306 ------~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 306 ------AKEALLELADFIIKRKY 322 (322)
T ss_pred ------HHHHHHHHHHHHHhccC
Confidence 99999999999999974
No 8
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.4e-64 Score=499.09 Aligned_cols=313 Identities=42% Similarity=0.595 Sum_probs=293.7
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhc-c-hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAE-V-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 162 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~-~-p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~ 162 (427)
..|..+.+..+++.+.+.+...+... + +.+..+.+|.+..+ ||++||.+|+++|++++.+..
T Consensus 64 ~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~~-------------- 127 (384)
T KOG0776|consen 64 LFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGDE-------------- 127 (384)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhc--ccccCchhhhhHHHhcccccc--------------
Confidence 46778889999999999999988765 4 46777778999999 999999999999999984221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014276 163 LRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATV 240 (427)
Q Consensus 163 ~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~ 240 (427)
..++.+|+++||||+|||||||| ||++++|||+||.|+.||++ +|||+|||||++|+..++.+.|+.++++++++
T Consensus 128 --~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k-~AvLaGD~LLa~A~~~la~l~n~~v~elm~~a 204 (384)
T KOG0776|consen 128 --SSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNK-MAVLAGDALLALASEHLASLENPVVVELMASA 204 (384)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCCcchhhcch-hhhhhhHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 26899999999999999999999 99999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccC---CC-CCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014276 241 VEHLVTGETMQMTTSS---DQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 316 (427)
Q Consensus 241 ~~~l~~Gq~~dl~~~~---~~-~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDll 316 (427)
+.++++|++++....+ +. +..+++|..++.+|||+|++.+|++|++++|.++++.+.+++||++||++||+.||++
T Consensus 205 I~dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDil 284 (384)
T KOG0776|consen 205 IADLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDIL 284 (384)
T ss_pred HHHHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999988874 33 3478999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014276 317 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396 (427)
Q Consensus 317 D~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 396 (427)
||+...+.+||++|.|+..|+.|+|+||++++.|++.+.+.+.+.++.+.+++.+++. +++.|..++++|.++|++.
T Consensus 285 dftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~ 361 (384)
T KOG0776|consen 285 DFTKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEA 361 (384)
T ss_pred CcccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888887 8999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014276 397 IDSLPENNDEDVTKSRRALLDLTHRVITR 425 (427)
Q Consensus 397 L~~lp~~~~~~~~~~r~~L~~l~~~v~~R 425 (427)
|+.+|+++ +|++|..|+..+++|
T Consensus 362 l~~~p~s~------ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 362 LQSLPRSE------ARSALENLVLAVLTR 384 (384)
T ss_pred HhCCCCch------HHHHHHHHHHHHhcC
Confidence 99999999 999999999999987
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=4.6e-61 Score=476.06 Aligned_cols=279 Identities=27% Similarity=0.399 Sum_probs=249.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (427)
...++..+..|++.|.+.+... ++.+.++..|++..| |||+||.|++++++++|.+. +
T Consensus 4 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 64 (299)
T PRK10581 4 PQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVST-----------------N 64 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCCH-----------------H
Confidence 3457778888999998887642 467899999999988 99999999999999997642 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCH--------HHHH
Q 014276 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT--------EVVT 235 (427)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~--------~v~~ 235 (427)
....+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||++.|+..++....+ +++.
T Consensus 65 ~~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 143 (299)
T PRK10581 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEA-NAILAGDALQTLAFSILSDAPMPEVSDRDRISMIS 143 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcc-hHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHH
Confidence 5678999999999999999999 99999999999999999999 99999999999999999875422 3455
Q ss_pred HHHHH--HHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhhh
Q 014276 236 LLATV--VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLI 312 (427)
Q Consensus 236 ~ls~~--~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~-~~~~~~l~~~G~~lGiAFQI~ 312 (427)
.++.+ +..++.||.+|+.+... ..+.++|++|+.+|||+||++||.+|++++|.+ ++.++.+++||+++|+||||+
T Consensus 144 ~~~~~~~~~~l~~GQ~ld~~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~ 222 (299)
T PRK10581 144 ELASASGIAGMCGGQALDLEAEGK-QVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQ 222 (299)
T ss_pred HHHHhcccchhhHhhHHHHhccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55654 56899999999988654 678999999999999999999999999999986 457899999999999999999
Q ss_pred hhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014276 313 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 392 (427)
Q Consensus 313 DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 392 (427)
||++|++++++.+|||.++|+++||+|+|+++++ ++++.++++|.++
T Consensus 223 DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~---------------------------------e~a~~~a~~~~~~ 269 (299)
T PRK10581 223 DDILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDD 269 (299)
T ss_pred HHHccccCChHHHCCCcchhhhcCCCCHHHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999954 5788999999999
Q ss_pred HHHHhccCCCCCCcchHHH-HHHHHHHHHHHHhccC
Q 014276 393 AAAAIDSLPENNDEDVTKS-RRALLDLTHRVITRNK 427 (427)
Q Consensus 393 A~~~L~~lp~~~~~~~~~~-r~~L~~l~~~v~~R~k 427 (427)
|.+.|+.+|+++ . ++.|..|++++++|+|
T Consensus 270 A~~~l~~l~~~~------~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 270 ARQSLDQLAAQS------LDTSALEALANYIIQRDK 299 (299)
T ss_pred HHHHHHhCcCCc------hhHHHHHHHHHHHHhccC
Confidence 999999999877 4 7899999999999986
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=4.9e-56 Score=432.25 Aligned_cols=254 Identities=39% Similarity=0.575 Sum_probs=239.0
Q ss_pred chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 111 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 190 (427)
Q Consensus 111 ~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~ 190 (427)
.+.+.++..|++..| ||++||.|++++++++|++.. +.+..+|+++|++|+||||||||+|+
T Consensus 3 ~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~~----------------~~~~~la~aiEllh~asLIhDDI~D~ 64 (259)
T cd00685 3 VELLREALRYLLLAG--GKRLRPLLVLLAARALGGPEL----------------EAALRLAAAIELLHTASLVHDDVMDN 64 (259)
T ss_pred chHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 456889999998878 999999999999999987530 26789999999999999999999999
Q ss_pred CCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHH
Q 014276 191 ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN---TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 267 (427)
Q Consensus 191 s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~---~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ 267 (427)
|++|||+||+|.+||+. .|||+||+|++.+++.++...+ .++++.+++++..+++||++|+.+..+...++++|++
T Consensus 65 s~~RRG~p~~~~~~G~~-~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~ 143 (259)
T cd00685 65 SDLRRGKPTVHKVFGNA-TAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLR 143 (259)
T ss_pred CcccCCCCcHHHHhCcc-cHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHH
Confidence 99999999999999999 9999999999999999998877 7899999999999999999999987766789999999
Q ss_pred HHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhh
Q 014276 268 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 347 (427)
Q Consensus 268 ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~ 347 (427)
++.+|||+||+.+|.+|++++|++++..+.+++||+++|++|||.||++|++++++.+||+.++||++||+|+|+++++
T Consensus 144 ~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l- 222 (259)
T cd00685 144 IIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL- 222 (259)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014276 348 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 425 (427)
Q Consensus 348 ~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R 425 (427)
++.++.|.++|...|+.+|.+. .++.|..+++++++|
T Consensus 223 -----------------------------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 -----------------------------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6889999999999999999887 788999999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=4e-55 Score=426.15 Aligned_cols=249 Identities=33% Similarity=0.545 Sum_probs=215.2
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 014276 116 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 195 (427)
Q Consensus 116 ~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RR 195 (427)
+++.|++..| |||+||.|++++++++|.+ .+.+..+|+++||||+||||||||+|+|++||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 4677778878 9999999999999999853 24789999999999999999999999999999
Q ss_pred CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----CHHH---HHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 014276 196 GIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK----NTEV---VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 268 (427)
Q Consensus 196 G~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~----~~~v---~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~i 268 (427)
|+||+|.+||++ .|||+||||+++|+..++... +..+ ...+...+.....||..++.+... ..++++|++|
T Consensus 64 G~pt~~~~~G~~-~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i 141 (260)
T PF00348_consen 64 GKPTVHKKFGNA-IAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK-DPTEEEYLEI 141 (260)
T ss_dssp TEECHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-STSHHHHHHH
T ss_pred CCcccccccccc-chhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc-cccHHHHHHH
Confidence 999999999999 999999999999999999887 2333 344444455555667777766544 7899999999
Q ss_pred HhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhh
Q 014276 269 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 348 (427)
Q Consensus 269 i~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~ 348 (427)
+.+|||+||++||++|++++|.+++..+.+++||+++|+||||+||++|++++++..||+.++||++||+|+|+++++++
T Consensus 142 ~~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~ 221 (260)
T PF00348_consen 142 IRLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALER 221 (260)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc-HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHH
Q 014276 349 FP-QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 386 (427)
Q Consensus 349 ~~-~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a 386 (427)
.+ ..++++... ....+.+.+.+.+..++.+++++..+
T Consensus 222 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 222 AREELRELLQEA-YGKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHHhhc
Confidence 54 455555443 33446677888888888898887765
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1.6e-42 Score=331.05 Aligned_cols=235 Identities=40% Similarity=0.603 Sum_probs=213.3
Q ss_pred chHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccc-cCchhH
Q 014276 131 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV-MGNKVL 209 (427)
Q Consensus 131 ~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~-~G~~~~ 209 (427)
+||.+++++++++|++. +.+..+++++|+||++++|||||+|++..|||+|++|.+ ||+. .
T Consensus 1 ~r~~~~~~~~~~~~~~~-----------------~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~-~ 62 (236)
T cd00867 1 SRPLLVLLLARALGGDL-----------------EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNA-L 62 (236)
T ss_pred CcHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHh-H
Confidence 59999999999998642 367899999999999999999999999999999999999 9999 9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC
Q 014276 210 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 289 (427)
Q Consensus 210 AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag 289 (427)
||++||++++.++..++.....++.+++++++..+++||.+|+.+..+...++++|++++++|||++|+.+|.+++++++
T Consensus 63 ai~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~ 142 (236)
T cd00867 63 AILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG 142 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC
Confidence 99999999999999999888888999999999999999999998876557899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHH
Q 014276 290 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIA 369 (427)
Q Consensus 290 ~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i 369 (427)
.+++..+.+..||+++|+||||.||++|+.++.+.+|| .++||++||+|+|++++
T Consensus 143 ~~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------ 197 (236)
T cd00867 143 ADDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------ 197 (236)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH------------------------
Confidence 99888999999999999999999999999999999999 99999999999999996
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014276 370 LEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 425 (427)
Q Consensus 370 ~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R 425 (427)
.+.+.++.+++.+.+..+++..+ ..+..+..++..+.+|
T Consensus 198 -------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 -------------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred -------------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 56666777777777777766541 1467788888888765
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.3e-38 Score=290.02 Aligned_cols=269 Identities=21% Similarity=0.290 Sum_probs=242.4
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (427)
Q Consensus 112 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (427)
..+.++-.|++..+ ||.+|.-|.+.+.+.+..+. ++...+..++||+|++||+.|||.|++
T Consensus 21 ~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P~-----------------dkLaii~~ivemLHNsSLLIDDIEDNs 81 (322)
T KOG0777|consen 21 SILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLPK-----------------DKLAIISQIVEMLHNSSLLIDDIEDNS 81 (322)
T ss_pred HHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHhccceeeccccccc
Confidence 35777889999866 99999999999999987642 256678899999999999999999999
Q ss_pred CCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCHHHHHHHHh
Q 014276 192 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTY 270 (427)
Q Consensus 192 ~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~Yl~ii~ 270 (427)
.+|||.|++|..||.+ ..|+++.|++.+|++.+..+..|+.+.++.+-+.+++.||.+|+.|+... ++++++|..|+-
T Consensus 82 ~LRRG~pvaHsIyGvp-StINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~ 160 (322)
T KOG0777|consen 82 PLRRGQPVAHSIYGVP-STINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVM 160 (322)
T ss_pred hhhcCCcchhhhccCc-chhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999998765 458999999999
Q ss_pred hhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhhCc
Q 014276 271 YKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 350 (427)
Q Consensus 271 ~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~ 350 (427)
.|||.||.++.++.-.++....+ +..+-.-+|+.|||+|||+++...+....|..+.||.|||.++|+++|+...+
T Consensus 161 ~KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~ 236 (322)
T KOG0777|consen 161 NKTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKG 236 (322)
T ss_pred HhcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCC
Confidence 99999999999999998865554 44556789999999999999998888888999999999999999999997643
Q ss_pred ---HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 351 ---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 351 ---~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
++..++..+..+-+....++.++.+.|+++|++....+...+|...++....++
T Consensus 237 q~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 237 QTEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred chHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 566777777666666778999999999999999999999999999999988887
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.1e-33 Score=268.28 Aligned_cols=298 Identities=18% Similarity=0.141 Sum_probs=247.4
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (427)
Q Consensus 112 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (427)
+.+.....|... | ||..|...++.+.+++..+... .++....+..+++++|++++..||-|||||+|
T Consensus 38 ~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~l----------~~~~~~~a~~lGw~vElLQaffLiaDDIMDnS 104 (347)
T KOG0711|consen 38 EWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRKL----------DEEELQLALILGWCVELLQAFFLVADDIMDNS 104 (347)
T ss_pred HHHHHHHhccCc-c--cccccchhHHHHHHHhcCccCC----------CHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 456677777754 7 9999999999999999764321 23445577889999999999999999999999
Q ss_pred CCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHH
Q 014276 192 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS-----LKNTEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 264 (427)
Q Consensus 192 ~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~-----~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~--~~~~s~~~ 264 (427)
.+|||+|||+.+-|.+-.|||-+-+|-+....+|.. ....++++++.++....+.|++++-.... -...|++.
T Consensus 105 ~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~~ 184 (347)
T KOG0711|consen 105 KTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLEK 184 (347)
T ss_pred cccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHHH
Confidence 999999999999999547999998888877667663 22367899999999999999665543321 12468899
Q ss_pred HHHHHhhhhcch-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHH
Q 014276 265 YMQKTYYKTASL-ISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 342 (427)
Q Consensus 265 Yl~ii~~KTasL-~~~a~~~gailag~-~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPv 342 (427)
|..|+.+|||.+ |-+|.++|.+++|. ..+.......+-..+|..||++||+||++||++.+|| +|+||.++|+||.+
T Consensus 185 y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv 263 (347)
T KOG0711|consen 185 YVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWLV 263 (347)
T ss_pred HHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeeeh
Confidence 999999999999 99999999999994 4566777899999999999999999999999999999 58999999999999
Q ss_pred HHHhhh-CcHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014276 343 LFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 419 (427)
Q Consensus 343 l~Al~~-~~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~ 419 (427)
..|++. .++..+++...+. +++.++.+..+..+.+.-+.-.+.-..........|+.++++.. ..+..+..++
T Consensus 264 ~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~~~~~~----~~~~v~t~fl 339 (347)
T KOG0711|consen 264 VKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQVDEDTG----VKVKVGTSFL 339 (347)
T ss_pred HHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHccCCCc----chhhhHHHHH
Confidence 999997 5788888877776 45788899999988888877778888888888888888877763 2556677899
Q ss_pred HHHHhccC
Q 014276 420 HRVITRNK 427 (427)
Q Consensus 420 ~~v~~R~k 427 (427)
..+.+|+|
T Consensus 340 ~kiykr~k 347 (347)
T KOG0711|consen 340 NKIYKRSK 347 (347)
T ss_pred HHHHhhcC
Confidence 99999975
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.92 E-value=4.3e-23 Score=192.47 Aligned_cols=226 Identities=31% Similarity=0.437 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccc---cCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV---MGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~---~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
..++.++|.+|+++++||||+|++..|+|.++++.. +|.. .+++.|++++..++..+.....+.+...+.+.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLP-EAILAGDLLLADAFEELAREGSPEALEILAEALLDL 91 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCch-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999988 9999 999999999999999998877788899999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
+.||..|+.+..+...+.++|+.+.+.|||.++...|..++...+.+....+.+..+|.++|++||+.||+.||..+.+.
T Consensus 92 ~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~ 171 (243)
T cd00385 92 LEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAER 171 (243)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999987655689999999999999999999999999988887777889999999999999999999999877643
Q ss_pred cCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
. +|+.|+|.+++.+......+. ..+..++.++.+...+..+.+++.+.+..+....
T Consensus 172 ~---------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 172 G---------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred h---------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 578999999988764321111 1677888999999999999999999998887654
Q ss_pred CcchHHHHHHHHHHHHHH
Q 014276 405 DEDVTKSRRALLDLTHRV 422 (427)
Q Consensus 405 ~~~~~~~r~~L~~l~~~v 422 (427)
. .....+...+..+
T Consensus 228 ~----~~~~~~~~~~~~~ 241 (243)
T cd00385 228 P----DVPRALLALALNL 241 (243)
T ss_pred H----HHHHHHHHHHHHH
Confidence 1 1344455544443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.74 E-value=0.00074 Score=64.06 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014276 166 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 245 (427)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~ 245 (427)
+....+.++-++|+|...||.|-. +..+.+...-. -. ..||+|||.=++-+.+||..++..+++.+++++..+.
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~----RQ-LtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiN 107 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEESSKE----RQ-LTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEIN 107 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHh----hh-hhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999999966 33322221111 14 7999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHH-hhhhcch
Q 014276 246 TGETMQMTTSSDQRCSMDYYMQKT-YYKTASL 276 (427)
Q Consensus 246 ~Gq~~dl~~~~~~~~s~~~Yl~ii-~~KTasL 276 (427)
+....=-... ..+.++|++.+ .-+|+-+
T Consensus 108 E~K~~ly~~~---~~~~e~~~~~~~~ies~l~ 136 (212)
T PF07307_consen 108 ELKMSLYQKK---KETAEEYLESVVTIESALF 136 (212)
T ss_pred HHHHHHHHhh---hCCHHHHHHHHHHHHHHHH
Confidence 9986543332 24677777644 3344333
No 17
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.15 E-value=0.082 Score=53.82 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q 014276 231 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 310 (427)
Q Consensus 231 ~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQ 310 (427)
+..-..+.+.+..|..|..+++....-...|.++|..-.++=-|..-.+.+.+-+. +|...+......+++..+|+|+|
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQ 178 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQ 178 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHH
Confidence 45667778888999999988876542112678888776666544443444444322 23222211234678999999999
Q ss_pred hhhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014276 311 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 390 (427)
Q Consensus 311 I~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 390 (427)
+.|=+.|+ +.|+.+|++=||.=..-+......++.. ++.-+...+ .++.-...|..|.
T Consensus 179 lTNIlRDv-----------~ED~~~GR~YlP~e~l~~~g~~~~dl~~-----~~~~~~~~~------~l~~lv~~A~~~~ 236 (336)
T TIGR01559 179 KTNIIRDY-----------LEDINEGRMFWPREIWSKYAKKLGDFKK-----PENSDKALQ------CLNELVTNALHHA 236 (336)
T ss_pred HHHHHHHH-----------HhHHhCCCCCCCHHHHHHcCCCHHHhcC-----ccccHHHHH------HHHHHHHHHHHHH
Confidence 99988887 4677889988886432222222222221 112222222 2345557788899
Q ss_pred HHHHHHhccCCCCC
Q 014276 391 NLAAAAIDSLPENN 404 (427)
Q Consensus 391 ~~A~~~L~~lp~~~ 404 (427)
+.|.+.+..+++..
T Consensus 237 ~~al~yl~~l~~~~ 250 (336)
T TIGR01559 237 TDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999886654
No 18
>PLN02632 phytoene synthase
Probab=96.06 E-value=0.14 Score=52.00 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhhhhhcc
Q 014276 239 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVL 316 (427)
Q Consensus 239 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~--~~~~~~l~~~G~~lGiAFQI~DDll 316 (427)
..+..+++|..+|+... ...+++++..-+++--|++..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.
T Consensus 140 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILR 214 (334)
T PLN02632 140 QPFRDMIEGMRMDLVKS--RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILR 214 (334)
T ss_pred HHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999998754 23577887777777666666655544 33222 1223456788999999999999887
Q ss_pred cccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014276 317 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396 (427)
Q Consensus 317 D~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 396 (427)
|+ +.|+..|++-+|.=..-+.+=...+++... .++ .+. ++ +.+-...++.|.++|...
T Consensus 215 Dv-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~-~~~-~~~---~l------~~~~~~~Ar~~~~~a~~~ 272 (334)
T PLN02632 215 DV-----------GEDARRGRVYLPQDELAQFGLTDEDIFAGK-VTD-KWR---AF------MKFQIKRARMYFAEAEEG 272 (334)
T ss_pred HH-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcCC-CCH-HHH---HH------HHHHHHHHHHHHHHHHHh
Confidence 86 567888999998654333221122233221 111 221 11 233336789999999999
Q ss_pred hccCCCCC
Q 014276 397 IDSLPENN 404 (427)
Q Consensus 397 L~~lp~~~ 404 (427)
+..+|...
T Consensus 273 l~~lp~~~ 280 (334)
T PLN02632 273 VSELDPAS 280 (334)
T ss_pred HhhCCHHh
Confidence 99998754
No 19
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=95.81 E-value=0.23 Score=48.34 Aligned_cols=141 Identities=20% Similarity=0.161 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 014276 236 LLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 315 (427)
Q Consensus 236 ~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDl 315 (427)
+-.+.+..+++|...|+.... ..|++++..-+++-+|++..+.+.+...- .+. .....++.++|.|+|+.|=+
T Consensus 88 l~~~~l~~li~~~~~dl~~~~--~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nil 160 (267)
T PF00494_consen 88 LPREPLLELIDGMEMDLEFTP--YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNIL 160 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT-S----SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHH
Confidence 445567889999999988643 45888988888888888776655543221 222 45677889999999999977
Q ss_pred ccccccccccCCCCccc-cccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014276 316 LDFTGTSASLGKGSLSD-IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 394 (427)
Q Consensus 316 lD~~g~~~~~GK~~~~D-l~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~ 394 (427)
.|+ +.| ++.|++-+|.=..-+.+=...+++..... .+.+..+ +......++.+.++|.
T Consensus 161 Rd~-----------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~-~~~~~~~---------~~~~~~~A~~~l~~a~ 219 (267)
T PF00494_consen 161 RDI-----------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPR-SERLRAL---------IRELAARARAHLDEAR 219 (267)
T ss_dssp HTH-----------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-G-GHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHh-----------HHHHHhcccccCCchhHHHcCCCHHHHHhcccC-CHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 776 567 78899998876654332112223222101 1112222 3456688899999999
Q ss_pred HHhccCCCCC
Q 014276 395 AAIDSLPENN 404 (427)
Q Consensus 395 ~~L~~lp~~~ 404 (427)
..+..+|+..
T Consensus 220 ~~~~~l~~~~ 229 (267)
T PF00494_consen 220 AGLSALPPPR 229 (267)
T ss_dssp HGGGGS--TT
T ss_pred HHHHHcCCHh
Confidence 9999996554
No 20
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=95.55 E-value=0.23 Score=48.52 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 014276 239 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 318 (427)
Q Consensus 239 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~ 318 (427)
+.+..+++|..+|+... .-.+++++..-+++-.|++..+.+.+ ++.... +....++.++|+|+|+.|=+.|+
T Consensus 93 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR--RYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999998853 24577777777777666655554433 332122 23568899999999999977776
Q ss_pred cccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014276 319 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398 (427)
Q Consensus 319 ~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 398 (427)
+.|+..|++.+|.=..-+.+-...+++.. .. .+.+..+ +.+....|+.|...|...+.
T Consensus 165 -----------~eD~~~gR~YlP~d~l~~~gv~~~~l~~~-~~-~~~~~~~---------~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 165 -----------GEDARRGRIYLPREELARFGVTLEDLLAP-EN-SPAFRAL---------LRRLIARARAHYREALAGLA 222 (265)
T ss_pred -----------HHHHccCCCcCCHHHHHHcCCCHHHHcCC-CC-CHHHHHH---------HHHHHHHHHHHHHHHHHhHH
Confidence 46778899999875544332222233322 11 1222222 34555778999999999999
Q ss_pred cCCCCC
Q 014276 399 SLPENN 404 (427)
Q Consensus 399 ~lp~~~ 404 (427)
.+|...
T Consensus 223 ~lp~~~ 228 (265)
T cd00683 223 ALPRRS 228 (265)
T ss_pred hCCHhh
Confidence 999543
No 21
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.52 E-value=0.33 Score=47.48 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 014276 239 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 318 (427)
Q Consensus 239 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~ 318 (427)
..+..|++|...|+... ...|++++..-++.-.|++..+.+.+ ++..++ .....+.++|+|+|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT--RYPDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 44678899999998754 34588888887777777776665554 333222 3467889999999999977776
Q ss_pred cccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014276 319 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398 (427)
Q Consensus 319 ~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 398 (427)
+.|+..|++.+|.=..-+.+-...+++... .+ +.+..+ +.+-...++.|.++|.+.+.
T Consensus 156 -----------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~-~~-~~~~~~---------~~~l~~~A~~~l~~a~~~~~ 213 (266)
T TIGR03465 156 -----------GEDARRGRIYLPAEELQRFGVPAADILEGR-YS-PALAAL---------CRFQAERARAHYAEADALLP 213 (266)
T ss_pred -----------HHHHhCCCeecCHHHHHHcCCCHHHhcCCC-CC-HHHHHH---------HHHHHHHHHHHHHHHHHhhh
Confidence 467788999998755433322222222221 11 222222 34444668888999999988
Q ss_pred cCCCCC
Q 014276 399 SLPENN 404 (427)
Q Consensus 399 ~lp~~~ 404 (427)
.+|...
T Consensus 214 ~~p~~~ 219 (266)
T TIGR03465 214 ACDRRA 219 (266)
T ss_pred hCCHhh
Confidence 888643
No 22
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.45 E-value=0.49 Score=46.35 Aligned_cols=134 Identities=10% Similarity=-0.031 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 014276 240 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 319 (427)
Q Consensus 240 ~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~ 319 (427)
.+..+++|..+|+... .-.|++++..-+++-.|++..+++.+ ++..+++ ...++.++|+|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl- 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVVVT--RYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV- 156 (266)
T ss_pred HHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-
Confidence 4677888998888754 23577777776776666666655443 3333332 246788999999999977775
Q ss_pred ccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014276 320 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 399 (427)
Q Consensus 320 g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 399 (427)
+.|+..|++.+|.=..-+.+=...+++... .+ +.+.. .+..-...++.|.+.|...+..
T Consensus 157 ----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~-~~-~~~~~---------~~~~~~~~A~~~~~~a~~~~~~ 215 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRDDLARFGVSEEDLAAGR-AT-PALRE---------LMAFEVSRTRALLDRGAPLAAR 215 (266)
T ss_pred ----------HHHHhcCCccCCHHHHHHcCCCHHHHhcCC-CC-HHHHH---------HHHHHHHHHHHHHHHHHHhHHh
Confidence 567788999998654333221122333221 11 22222 2344557789999999999999
Q ss_pred CCCCC
Q 014276 400 LPENN 404 (427)
Q Consensus 400 lp~~~ 404 (427)
+|...
T Consensus 216 lp~~~ 220 (266)
T TIGR03464 216 VDGRL 220 (266)
T ss_pred CCHhh
Confidence 98653
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=93.20 E-value=4.6 Score=39.82 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC--CCHHHHH--HHHHHHHH
Q 014276 230 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGKN 304 (427)
Q Consensus 230 ~~~v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~Yl~ii~~KTasL~~~a~~~gailag--~~~~~~~--~l~~~G~~ 304 (427)
.+.....+.+.+...+.|...+..+..+ ..+++++|+++=..-.|..+..+ ++-...| .++...+ .+..+-..
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~--l~~~~~g~~lp~~~~~~~~~~~l~~~ 204 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLG--LSEFIGGPEVPAAVRLDPVMRALEAL 204 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHH--HHHHhcCCCCCHHHHhChHHHHHHHH
Confidence 4667788888889999999888765433 34799999975444444444322 2222223 2444322 36778888
Q ss_pred HHHHHhhhhhccccccc
Q 014276 305 LGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 305 lGiAFQI~DDllD~~g~ 321 (427)
.+...-+.||+..|--+
T Consensus 205 ~~~~~~l~NDl~S~~KE 221 (303)
T cd00687 205 ASDAIALVNDIYSYEKE 221 (303)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 88899999999998544
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=88.25 E-value=12 Score=36.56 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCC---CCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 168 QCIAEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD~s~---~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
.-...++=++|.+.-+.+|+.|-+. .|..+|-...+...+ .|...+-.+..-+.-...-+ ++.+.-.. +..+
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~-~a~~~~~~~~~~~~~~~~~l-~~~~~~~~---~~~~ 114 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRR-EALLLAILLFILGLIAAYLI-SPLAFLVV---ILVS 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH-hHHHHHHH---HHHH
Confidence 3345566799999999999977432 366777777777777 78777766665555333222 22221110 1111
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
..+=..-...+.. .-..+.. .|..++.+...|....+......-.+.-+.--..+.+++.+|+.|..+
T Consensus 115 ~~~~~Ys~~lK~~--~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~---- 182 (279)
T PRK12884 115 VLGILYNWKLKEY--GLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG---- 182 (279)
T ss_pred HHHHHHHHhhccc--cchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Confidence 1111111111110 0011111 122233444444443333322222333344455667788889988754
Q ss_pred cCCCCccccccCcccHHHHHHhhh
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEE 348 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~ 348 (427)
|-+.|+.|+|+.+--+.
T Consensus 183 -------D~~~G~~Tl~v~~G~~~ 199 (279)
T PRK12884 183 -------DRLRGARTLAILYGEKI 199 (279)
T ss_pred -------HHHcCCeeechHhcHHH
Confidence 45789999999886543
No 25
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=85.24 E-value=30 Score=34.53 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccc
Q 014276 238 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 317 (427)
Q Consensus 238 s~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD 317 (427)
...+.++..|..+|+....- .+++++..-++ -||...+. .+..+++-.. ..........+|.|+|+.|=+.|
T Consensus 102 ~~~~~~~~da~~~Dl~~~~y--~~~~eL~~Yc~-~vAg~vG~--l~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRd 173 (288)
T COG1562 102 REAFPALIDAMRMDLDRTRY--LDFEELEEYCY-GVAGAVGL--LLARILGPDK---DAATRAYARGLGLALQLVNILRD 173 (288)
T ss_pred HHHHHHHHHHHHHHhhhccc--cCHHHHHHHHH-HhHHHHHH--HHHHHhCccc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999877532 23444443333 34443322 2333444322 22344445559999999998887
Q ss_pred ccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014276 318 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 397 (427)
Q Consensus 318 ~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L 397 (427)
+ +.|.+.|++=+|.=...+-+-...++...... +. ..+ .+++--..++.+...|...+
T Consensus 174 v-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~--~~---~~~------~~~~~~~~ar~~~~~a~~~~ 231 (288)
T COG1562 174 V-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRVD--DA---FRE------LMRFEADRARDHLAEARRGL 231 (288)
T ss_pred h-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccch--hH---HHH------HHHHHHHHHHHHHHHHHHhh
Confidence 6 57888898888854332222223333322111 12 222 23455577889999999999
Q ss_pred ccCCCCC
Q 014276 398 DSLPENN 404 (427)
Q Consensus 398 ~~lp~~~ 404 (427)
..+|...
T Consensus 232 ~~lp~~~ 238 (288)
T COG1562 232 PALPGRA 238 (288)
T ss_pred hhCCccc
Confidence 9998876
No 26
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=83.40 E-value=44 Score=32.11 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC--CCH---HHHHHHHHHHHH
Q 014276 231 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTA---EVAILAFDYGKN 304 (427)
Q Consensus 231 ~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag--~~~---~~~~~l~~~G~~ 304 (427)
......+.+.+...+.|...+..+.. ...++.++|+.+-..-.|..+.+++.- ...| .++ .....+..+-..
T Consensus 121 ~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~--~~~g~~l~~~~~~~~~~~~~l~~~ 198 (284)
T cd00868 121 SESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSF--LGMGDILPEEAFEWLPSYPKLVRA 198 (284)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHH--HHcCCCCCHHHHHHhhhhHHHHHH
Confidence 36677788888889999888876642 345799999986555444433222211 1222 333 345667777788
Q ss_pred HHHHHhhhhhccccccc
Q 014276 305 LGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 305 lGiAFQI~DDllD~~g~ 321 (427)
.+..-=+.||+..|--+
T Consensus 199 ~~~~~~l~NDl~S~~kE 215 (284)
T cd00868 199 SSTIGRLLNDIASYEKE 215 (284)
T ss_pred HHHHHHHhccchHHHHH
Confidence 88888899999888533
No 27
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=82.18 E-value=20 Score=35.09 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC---CCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDA---DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 226 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s---~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la 226 (427)
-+..++=++|.++.+..|+.|-+ ..|+.+|-..-+...+ .|...+-.+...++-...
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~-~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPR-GALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHH-HHHHHHHHHHHHHHHHHH
Confidence 34445668899999999997743 3468888888888889 999888888777764433
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=71.13 E-value=67 Score=31.51 Aligned_cols=56 Identities=11% Similarity=-0.061 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCC---CCCCCCcccccCchhHHHHHHHHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 225 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~l 225 (427)
-...++=++|.+.-+..|+.|-+.- ++.+|-...+...+ .|...+-.++.-++-..
T Consensus 41 l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~-~a~~~~~~l~~~~~~l~ 99 (279)
T PRK09573 41 LAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLK-EAKIFSITLFIVGLILS 99 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHH-HHHHHHHHHHHHHHHHH
Confidence 3445566899999999999885433 36788888888899 99999988877776433
No 29
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=64.98 E-value=1.5e+02 Score=29.24 Aligned_cols=159 Identities=18% Similarity=0.080 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCC-----CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014276 167 QQCIAEITEMIHVASLLHDDVLDDADTRR-----GIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 241 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RR-----G~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~ 241 (427)
..-...++=+.-.+..+.+|+.|-+.-|. .+|-..-+...+ .|....-.++..++-...-+......-.+.-.+
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~-~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~ 127 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVK-EALLLAILLLLLGLALALLLNPLAFLLSLAALV 127 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445566678888999999977554433 666666667777 777777777666654443333222222222222
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 014276 242 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTG 320 (427)
Q Consensus 242 ~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~-~~~~~~~l~~~G~~lGiAFQI~DDllD~~g 320 (427)
..... ...+. ..-..++. -|..+..+.-.|+...+. .....-.+.-+..-..++|.+..|+.|..+
T Consensus 128 l~~~Y-----~~~Kr--~~~~~~~~------lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~ 194 (289)
T COG0382 128 LALAY-----PFLKR--FTFLPQLV------LGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEG 194 (289)
T ss_pred HHHHH-----HHhhc--CCchHHHH------HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 22222 11111 11222222 245566666666655553 233445677777888999999999999876
Q ss_pred cccccCCCCccccccCcccHHHHHHhhhCc
Q 014276 321 TSASLGKGSLSDIRHGIITAPILFAMEEFP 350 (427)
Q Consensus 321 ~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~ 350 (427)
|. +.|..|.|+.+-.+...
T Consensus 195 D~-----------~~G~~s~~~~~G~~~a~ 213 (289)
T COG0382 195 DR-----------KAGLKSLPVLFGIKKAL 213 (289)
T ss_pred hH-----------hcCCcchHHHhCchhHH
Confidence 54 67888999988765543
No 30
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=63.70 E-value=91 Score=31.30 Aligned_cols=51 Identities=8% Similarity=-0.116 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCC---CCCCCcccccCchhHHHHHHHHHHHHHHH
Q 014276 172 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKVLAVLAGDFLLSRACV 223 (427)
Q Consensus 172 ~avEliH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~~AVl~GD~Lla~a~~ 223 (427)
.+.=++|.++-+..|+.|.+.-| +.+|...-+...+ .|...+-.++..++-
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~-~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLR-WVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHH-HHHHHHHHHHHHHHH
Confidence 44557999999999999965434 5577777778888 888888777766653
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=62.52 E-value=1.4e+02 Score=29.42 Aligned_cols=57 Identities=16% Similarity=0.005 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC----CCC-CCCCCcccccCchhHHHHHHHHHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDA----DTR-RGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 226 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s----~~R-RG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la 226 (427)
-+..++=++|.+.-+..|+.|.+ ..| +.+|-..-+...+ .|...+-.+...++-...
T Consensus 44 ~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~-~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 44 LFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVR-QAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHH-HHHHHHHHHHHHHHHHHH
Confidence 34455568899999999997732 233 4688888888888 898888877776664443
No 32
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=59.72 E-value=1.6e+02 Score=27.76 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=74.5
Q ss_pred HHHHHHHhccCCCCCCCCCC--C---CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHH
Q 014276 176 MIHVASLLHDDVLDDADTRR--G---IGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV--VTLLATVVEHLVTGE 248 (427)
Q Consensus 176 liH~AsLIHDDIiD~s~~RR--G---~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v--~~~ls~~~~~l~~Gq 248 (427)
++|.+.-+.||+.|-+.-|. + +|-...+...+ .+...+-.++..+.-.....+ +.. +-.+.-.+. +..-.
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~-~~~~~~~~~~~l~l~l~~~~~-~~~~~~~~~~~~~~-~~Ys~ 110 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPR-QALIFALILLLLGLLLALLLG-PWFLLILLLGFLLG-LLYSP 110 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHH-HHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHH-HHHhh
Confidence 99999999999988655554 3 34445566666 666666666555543322222 221 112222111 21111
Q ss_pred HHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccCC
Q 014276 249 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 327 (427)
Q Consensus 249 ~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~-~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 327 (427)
-..++..+- ..+.. .|..+.....+|+...+.. +...-.+.-+.--++.+....+|+.|+.+|
T Consensus 111 ~~~lk~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D------ 174 (257)
T PF01040_consen 111 PLRLKRRPL----WGELV------VALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGD------ 174 (257)
T ss_pred hhhhcceec----cchhh------HHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------
Confidence 001111000 00000 1111223333444444433 222333344445678888888899998655
Q ss_pred CCccccccCcccHHHHHHh
Q 014276 328 GSLSDIRHGIITAPILFAM 346 (427)
Q Consensus 328 ~~~~Dl~eGk~TlPvl~Al 346 (427)
.+.|+.|+|+.+-.
T Consensus 175 -----~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 175 -----RKAGRRTLPVLLGE 188 (257)
T ss_pred -----HHcCCcchHHHHHH
Confidence 46788999998843
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=58.63 E-value=1.9e+02 Score=28.30 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhccCCCCCC---CCCCCCCCcccccCchhHHHHHHHHHHHHHHH
Q 014276 172 EITEMIHVASLLHDDVLDDA---DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACV 223 (427)
Q Consensus 172 ~avEliH~AsLIHDDIiD~s---~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~ 223 (427)
.++=+.|.+.-+..|+.|-+ ..|+.+|-...+...+ .|...+-.++.-++.
T Consensus 44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~-~a~~~~~~l~~~g~~ 97 (277)
T PRK12883 44 LVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRK-AALYYSLLLFAVGLA 97 (277)
T ss_pred HHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHH-HHHHHHHHHHHHHHH
Confidence 34556678889999997733 2456677777777888 888877777665553
No 34
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=56.00 E-value=2.1e+02 Score=28.81 Aligned_cols=57 Identities=12% Similarity=-0.073 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC---CCCC--CCCCcccccCchhHHHHHHHHHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDA---DTRR--GIGSLNFVMGNKVLAVLAGDFLLSRACVALA 226 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s---~~RR--G~pt~h~~~G~~~~AVl~GD~Lla~a~~~la 226 (427)
-...+.=++|.++-+..|+.|.+ ..+| .+|....+...+ .|+..+-.+...++-.+.
T Consensus 76 l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~-~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 76 LFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRK-QAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHH-HHHHHHHHHHHHHHHHHH
Confidence 34456668999999999997732 2343 589888888888 888777777666654444
No 35
>PLN00012 chlorophyll synthetase; Provisional
Probab=52.67 E-value=1.2e+02 Score=31.36 Aligned_cols=49 Identities=10% Similarity=-0.056 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCC---CCCCCcccccCchhHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKVLAVLAGDFLL 218 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~~AVl~GD~Ll 218 (427)
....+.=+++.++-+..|+.|.+.-+ +.+|..-.....+ .++..+-.++
T Consensus 127 ~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~-~al~~~~~l~ 178 (375)
T PLN00012 127 CMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISEN-EVITQIWVLL 178 (375)
T ss_pred HHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHH-HHHHHHHHHH
Confidence 34445668888899999998844322 5567777777777 7777443333
No 36
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=52.42 E-value=1.6e+02 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=30.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 285 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 285 ailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
+.++|.+.+....+...-+-+=.|.-|.||+.|= +++|.|++|.-..|
T Consensus 55 ~~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 55 GKFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKW 102 (319)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHh
Confidence 3445555544444455556677788999999772 45677777765544
No 37
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=52.20 E-value=2.1e+02 Score=28.52 Aligned_cols=50 Identities=6% Similarity=-0.154 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCC---CCCCCCcccccCchhHHHHHHHHHHHHHH
Q 014276 172 EITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKVLAVLAGDFLLSRAC 222 (427)
Q Consensus 172 ~avEliH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~~AVl~GD~Lla~a~ 222 (427)
.+.=++|.++-++.|+.|.+.- .|.+|....+...+ .+...+-.++..++
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~-~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEP-EVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHH-HHHHHHHHHHHHHH
Confidence 4557899999999999885432 34566777777888 88887766665554
No 38
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=51.73 E-value=17 Score=29.51 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 014276 292 AEVAILAFDYGKNLGLAYQLID 313 (427)
Q Consensus 292 ~~~~~~l~~~G~~lGiAFQI~D 313 (427)
+...+.+-+||..+|-.||++=
T Consensus 15 et~~e~llRYGLf~GAIFQliC 36 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLIC 36 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999864
No 39
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=49.75 E-value=2.9e+02 Score=27.88 Aligned_cols=50 Identities=30% Similarity=0.264 Sum_probs=32.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 283 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 283 ~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
+++.+.|.+.+....+..--+-+=.|..|.||+.| .+++|.|++|+-..|
T Consensus 54 l~~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D------------~s~~RRG~pt~~~~~ 103 (323)
T PRK10888 54 LAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVD------------ESDMRRGKATANAAF 103 (323)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHccccc------------CCcccCCCCCHHHHh
Confidence 33444455444333445555677788899999987 356788888865554
No 40
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=44.34 E-value=2.1e+02 Score=28.00 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCC----C-CCCCCCcccccCchhHHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDAD----T-RRGIGSLNFVMGNKVLAVLAGDFLLS 219 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s~----~-RRG~pt~h~~~G~~~~AVl~GD~Lla 219 (427)
-...+.=+++.+.-+..|+.|.+. . .+.+|-...+...+ .|...+-.+..
T Consensus 40 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~-~a~~~~~~~~~ 94 (282)
T TIGR01475 40 LILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKK-EARTMIILSLA 94 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHH-HHHHHHHHHHH
Confidence 344555688999999999977332 2 24678777778888 88887765543
No 41
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=44.15 E-value=2.5e+02 Score=26.56 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC-CCCHHHHHHHHhhhhcchHHHHHHHHHHHc---C-CCHHHHHHHHHHHHHHHH
Q 014276 233 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLA---G-QTAEVAILAFDYGKNLGL 307 (427)
Q Consensus 233 v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~Yl~ii~~KTasL~~~a~~~gaila---g-~~~~~~~~l~~~G~~lGi 307 (427)
+...+.+.+...+.|...+..+.... .+++++|+++=..-+|..+..++..-++ . | .+++....-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 45558888888888888877765433 5789999976555555444443332222 2 1 111222221125555666
Q ss_pred HHhhhhhccccc
Q 014276 308 AYQLIDDVLDFT 319 (427)
Q Consensus 308 AFQI~DDllD~~ 319 (427)
.--+.||+..|-
T Consensus 217 ~~~l~NDl~S~~ 228 (270)
T PF03936_consen 217 IIRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhcccchhh
Confidence 666779999884
No 42
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=40.93 E-value=5e+02 Score=28.14 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHhhhhcchHHH-HHHHHHHHc-CCCHHHHHHHH---HH
Q 014276 228 LKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISN-SCKAIALLA-GQTAEVAILAF---DY 301 (427)
Q Consensus 228 ~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~Yl~ii~~KTasL~~~-a~~~gaila-g~~~~~~~~l~---~~ 301 (427)
.+....+..+.+++..++.+-..+..+... ..++.++|++.-..-+|...-. .+..| ++ ..+.+..+.+. .+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l 429 (542)
T cd00684 352 EGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKL 429 (542)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHH
Confidence 334567788889999999999998887643 3579999999766544443322 11111 11 13555544433 57
Q ss_pred HHHHHHHHhhhhhccccccc
Q 014276 302 GKNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 302 G~~lGiAFQI~DDllD~~g~ 321 (427)
-...+....+.||+..+-.+
T Consensus 430 ~~~~~~i~rL~NDi~S~~kE 449 (542)
T cd00684 430 VRASSTIGRLMNDIATYEDE 449 (542)
T ss_pred HHHHHHHHHHhcChhhhHHH
Confidence 77888999999999988544
No 43
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=38.81 E-value=3.6e+02 Score=25.90 Aligned_cols=48 Identities=33% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHcCCCH-HHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 285 ALLAGQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 285 ailag~~~-~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
+.+.|.++ +....+...-+-+=.|+-|.||+.|= +++|.|++|+-..|
T Consensus 30 ~~~~g~~~~~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~ 78 (259)
T cd00685 30 ARALGGPELEAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVF 78 (259)
T ss_pred HHHhCCCchHHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHh
Confidence 33334443 44445556666778899999999762 33566666665544
No 44
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=37.89 E-value=3.8e+02 Score=25.82 Aligned_cols=53 Identities=28% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 280 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 280 a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
-|.+.+.+.|.+.+....+...-+.+=.|+-|.||+.| .+++|.|++|.-..|
T Consensus 20 l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D------------~s~~RRG~pt~~~~~ 72 (260)
T PF00348_consen 20 LVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDIID------------NSDLRRGKPTVHKKF 72 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhc------------ccccCCCCccccccc
Confidence 34445555666666666777777888899999999977 245788888765555
No 45
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=37.69 E-value=4.3e+02 Score=26.37 Aligned_cols=30 Identities=10% Similarity=-0.114 Sum_probs=22.0
Q ss_pred CCCCCcccccCchhHHHHHHHHHHHHHHHHH
Q 014276 195 RGIGSLNFVMGNKVLAVLAGDFLLSRACVAL 225 (427)
Q Consensus 195 RG~pt~h~~~G~~~~AVl~GD~Lla~a~~~l 225 (427)
+.+|....+...+ .|...+-.+..-++-.+
T Consensus 85 ~~Rpl~sG~is~~-~a~~~~i~l~~i~~~l~ 114 (297)
T PRK12871 85 KERPIPSGKLSSK-NAFALFILLAAVTSALI 114 (297)
T ss_pred CCCccCCCCcCHH-HHHHHHHHHHHHHHHHH
Confidence 4677777788888 88888877776665443
No 46
>PRK13591 ubiA prenyltransferase; Provisional
Probab=35.29 E-value=4.9e+02 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhh
Q 014276 307 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 348 (427)
Q Consensus 307 iAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~ 348 (427)
++..+.+|+.|..|| .++|+.|+|+.+-.+.
T Consensus 193 ~~~~iindirDiEGD-----------r~~G~kTLPV~lG~~~ 223 (307)
T PRK13591 193 FINSCVYDFKDVKGD-----------TLAGIKTLPVSLGEQK 223 (307)
T ss_pred HHHHHHHHhhhhHhH-----------HHcCCeeEEEEECHHH
Confidence 344578999998655 5789999999886554
No 47
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=34.10 E-value=4.7e+02 Score=25.84 Aligned_cols=56 Identities=16% Similarity=-0.022 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhccCCCCCC----CCC-CCCCCcccccCchhHHHHHHHHHHHHHHHHHH
Q 014276 170 IAEITEMIHVASLLHDDVLDDA----DTR-RGIGSLNFVMGNKVLAVLAGDFLLSRACVALA 226 (427)
Q Consensus 170 lA~avEliH~AsLIHDDIiD~s----~~R-RG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la 226 (427)
...++=++|.+..+..|+.|.+ ..| +.+|-+..+...+ .|++.+-.++..++-...
T Consensus 51 ~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~-~a~~~~~~~~~~~~~l~~ 111 (290)
T PRK12870 51 IILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVK-VGIVIAIVALLCAAGLAF 111 (290)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHH-HHHHHHHHHHHHHHHHHH
Confidence 3445567899999999997743 233 4788888888899 999988888777764443
No 48
>PRK10581 geranyltranstransferase; Provisional
Probab=33.32 E-value=1.6e+02 Score=29.33 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC--C----------CCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 168 QCIAEITEMIHVASLLHDDVLDD--A----------DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD~--s----------~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
..+...-+.+=.|.=|.|||+|= + +.+.|++|+=..+|.. .|-...+-++..|...+..+.
T Consensus 206 ~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e-~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 206 PVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLE-QARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 44666678888999999999982 2 3445555555555555 555555555556666665553
No 49
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=32.67 E-value=66 Score=31.43 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=26.3
Q ss_pred HHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhh
Q 014276 305 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 348 (427)
Q Consensus 305 lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~ 348 (427)
+-.+.++.+|+.|..+| -+.|+.|+|+.+-.+.
T Consensus 173 ~~~~~~~~~d~~D~e~D-----------~~~G~~Tlpv~lG~~~ 205 (285)
T PRK12872 173 KSFIREIVFDIKDIEGD-----------RKSGLKTLPIVLGKER 205 (285)
T ss_pred HHHHHHHHHhcccchhH-----------HHcCCcccchhcchHH
Confidence 45678899999998655 4679999999987654
No 50
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=32.39 E-value=4.9e+02 Score=25.50 Aligned_cols=53 Identities=15% Similarity=-0.014 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCC----CC-CCCCCcccccCchhHHHHHHHHHHHHHHHH
Q 014276 171 AEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKVLAVLAGDFLLSRACVA 224 (427)
Q Consensus 171 A~avEliH~AsLIHDDIiD~s~----~R-RG~pt~h~~~G~~~~AVl~GD~Lla~a~~~ 224 (427)
..++=++|.+..+..|+.|.+- .| +.+|.+--+...+ .|...|-.++..++-.
T Consensus 48 ~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~-~a~~~~~~l~~~~~~l 105 (282)
T PRK12848 48 VLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEK-EALALFVVLVLVAFLL 105 (282)
T ss_pred HHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHH-HHHHHHHHHHHHHHHH
Confidence 3444488999999999977432 33 4688888888999 9999988888777643
No 51
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=29.30 E-value=3.2e+02 Score=26.68 Aligned_cols=149 Identities=9% Similarity=-0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCC---CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHH
Q 014276 170 IAEITEMIHVASLLHDDVLDDADTRRG---IGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT--EVVTLLATVVEHL 244 (427)
Q Consensus 170 lA~avEliH~AsLIHDDIiD~s~~RRG---~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~--~v~~~ls~~~~~l 244 (427)
...+.=+++.++-+..|+.|.+.-|++ +|........+ .+...+-.++..++-...-+.+. -++..+.-.+.-+
T Consensus 43 ~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~-~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 121 (283)
T TIGR01476 43 MLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLR-EVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVI 121 (283)
T ss_pred HHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Q ss_pred HHH---HHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 014276 245 VTG---ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 245 ~~G---q~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~ 321 (427)
..+ .......-++.-. -.++...+...+....+.-....-.+.-.---...++.+.||+.|+.+|
T Consensus 122 Ys~~p~~lk~~~~~g~~~v------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D 189 (283)
T TIGR01476 122 YSMPPIKLKRNGWLGPPAV------------GLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGD 189 (283)
T ss_pred ecCchhhhccCCCccHHHH------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q ss_pred ccccCCCCccccccCcccHHH
Q 014276 322 SASLGKGSLSDIRHGIITAPI 342 (427)
Q Consensus 322 ~~~~GK~~~~Dl~eGk~TlPv 342 (427)
. +.|+.|+|+
T Consensus 190 ~-----------~~G~~Tl~v 199 (283)
T TIGR01476 190 R-----------QLGLRSLPV 199 (283)
T ss_pred H-----------HcCCcCcce
No 52
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=29.09 E-value=85 Score=31.24 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 274 ASLISNSCKAIALLAGQTAEVAILAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 274 asL~~~a~~~gailag~~~~~~~~l~~~G~~l-GiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
+.+|.....+|....+..-...-.+-..+--+ ..++.+.+|+.|+.+|. ++|+.|+|+.+
T Consensus 140 ~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr-----------~~G~~Tlpv~l 200 (282)
T PRK13105 140 STHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADR-----------EAGIASIATVL 200 (282)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHH-----------HcCCccchHHh
No 53
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=26.24 E-value=3.6e+02 Score=26.38 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhhhhcchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHh-hhhhccccc-ccccccCCCCccccc
Q 014276 260 CSMDYYMQKTYYKTASLISNSCKAIALLA---GQTAEVAILAFDYGKNLGLAYQ-LIDDVLDFT-GTSASLGKGSLSDIR 334 (427)
Q Consensus 260 ~s~~~Yl~ii~~KTasL~~~a~~~gaila---g~~~~~~~~l~~~G~~lGiAFQ-I~DDllD~~-g~~~~~GK~~~~Dl~ 334 (427)
.+...|++..+-+|-.....++-+|+.++ +.-.-..-.+.-+|--+..+.= +.||+-|+. +-+...-.+...=+.
T Consensus 1 ~~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~ 80 (293)
T PRK06080 1 STFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIG 80 (293)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccccc
Q ss_pred cCcccHHHHHHh
Q 014276 335 HGIITAPILFAM 346 (427)
Q Consensus 335 eGk~TlPvl~Al 346 (427)
.|+.|..-.+..
T Consensus 81 ~G~is~~~~~~~ 92 (293)
T PRK06080 81 RGGISPKQVKRA 92 (293)
T ss_pred CCCCCHHHHHHH
Done!