Query 014276
Match_columns 427
No_of_seqs 247 out of 1651
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 5.4E-72 1.8E-76 562.5 33.2 316 85-426 24-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 3.2E-71 1.1E-75 556.6 32.5 317 85-427 11-333 (341)
3 3apz_A Geranyl diphosphate syn 100.0 8.7E-72 3E-76 562.9 27.4 342 85-427 7-348 (348)
4 3pko_A Geranylgeranyl pyrophos 100.0 1.1E-70 3.6E-75 551.6 28.3 318 85-427 14-334 (334)
5 3rmg_A Octaprenyl-diphosphate 100.0 1.1E-70 3.6E-75 551.6 26.9 315 86-427 7-326 (334)
6 3lmd_A Geranylgeranyl pyrophos 100.0 4.4E-70 1.5E-74 550.9 26.5 314 87-427 35-352 (360)
7 3nf2_A Putative polyprenyl syn 100.0 1.4E-69 4.9E-74 546.5 28.2 313 89-427 6-344 (352)
8 1wy0_A Geranylgeranyl pyrophos 100.0 1.5E-69 5.1E-74 545.5 25.7 316 86-427 5-342 (342)
9 3aqb_B Component B of hexapren 100.0 6.9E-69 2.4E-73 537.1 27.2 313 87-427 5-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 1.2E-67 4.2E-72 533.7 29.4 310 89-427 7-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 2.8E-67 9.6E-72 526.5 24.6 306 93-427 6-330 (330)
12 1v4e_A Octoprenyl-diphosphate 100.0 4.8E-66 1.6E-70 510.6 23.4 281 92-404 9-289 (299)
13 3lk5_A Geranylgeranyl pyrophos 100.0 5.5E-65 1.9E-69 517.6 28.2 321 86-426 19-372 (380)
14 3tc1_A Octaprenyl pyrophosphat 100.0 4.8E-65 1.6E-69 506.5 26.9 299 95-423 5-307 (315)
15 2e8v_A Geranylgeranyl pyrophos 100.0 1.8E-65 6E-70 515.2 20.4 304 99-424 10-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 2.1E-65 7.1E-70 506.6 19.2 292 103-427 2-297 (301)
17 3uca_A Geranyltranstransferase 100.0 1.4E-63 4.8E-68 496.7 25.0 282 85-427 30-324 (324)
18 1yhl_A Farnesyl pyrophosphate 100.0 8.6E-63 2.9E-67 499.8 27.9 299 112-427 34-362 (362)
19 3ts7_A Geranyltranstransferase 100.0 7.5E-63 2.6E-67 491.5 25.8 279 87-427 8-302 (324)
20 4f62_A Geranyltranstransferase 100.0 1.6E-62 5.5E-67 487.7 28.0 279 87-427 4-295 (317)
21 1rtr_A Geranyltranstransferase 100.0 6.3E-63 2.2E-67 488.7 22.6 273 95-427 9-293 (301)
22 2h8o_A Geranyltranstransferase 100.0 1.1E-62 3.9E-67 492.7 23.8 277 89-427 40-335 (335)
23 1rqj_A Geranyltranstransferase 100.0 5.4E-63 1.8E-67 489.0 21.2 280 89-427 4-299 (299)
24 3lsn_A Geranyltranstransferase 100.0 2.4E-62 8.1E-67 484.7 25.6 277 89-427 4-296 (304)
25 3p8l_A Geranyltranstransferase 100.0 3.2E-62 1.1E-66 483.2 25.4 276 91-425 13-302 (302)
26 3p8r_A Geranyltranstransferase 100.0 2.6E-62 8.7E-67 484.3 24.6 275 91-427 12-302 (302)
27 2qis_A Farnesyl pyrophosphate 100.0 1.1E-61 3.6E-66 493.2 28.8 296 112-427 64-374 (374)
28 3dyh_A Farnesyl pyrophosphate 100.0 3.4E-62 1.2E-66 498.8 24.3 326 87-427 24-390 (390)
29 2ihi_A Pyrophosphate synthase; 100.0 4.6E-62 1.6E-66 498.1 25.0 317 85-426 36-395 (395)
30 1uby_A FPS, farnesyl diphospha 100.0 5.3E-61 1.8E-65 486.9 28.8 296 112-427 57-367 (367)
31 3m0g_A Farnesyl diphosphate sy 100.0 1.1E-61 3.8E-66 478.5 22.0 274 89-427 4-289 (297)
32 3pde_A Farnesyl-diphosphate sy 100.0 1.9E-61 6.3E-66 478.6 22.7 279 89-427 9-300 (309)
33 3lom_A Geranyltranstransferase 100.0 2E-61 7E-66 479.6 23.0 277 89-427 10-303 (313)
34 3ipi_A Geranyltranstransferase 100.0 4.8E-61 1.6E-65 473.5 23.8 272 96-426 11-283 (295)
35 3mav_A Farnesyl pyrophosphate 100.0 1.9E-60 6.4E-65 487.6 28.9 291 113-425 67-394 (395)
36 2ftz_A Geranyltranstransferase 100.0 1.2E-60 4.2E-65 468.3 24.2 265 96-425 15-284 (284)
37 2her_A Fragment, farnesyl pyro 100.0 5.8E-62 2E-66 492.3 14.9 284 112-425 58-354 (368)
38 3llw_A Geranyltranstransferase 100.0 3.4E-58 1.2E-62 456.1 23.9 273 99-426 18-304 (311)
39 3npk_A Geranyltranstransferase 100.0 2.4E-57 8.4E-62 446.1 21.8 266 97-424 7-284 (291)
40 2j1p_A Geranylgeranyl pyrophos 100.0 5.2E-57 1.8E-61 445.0 24.2 269 85-427 10-293 (293)
41 2azj_A Geranylgeranyl pyrophos 100.0 3.1E-57 1.1E-61 445.4 20.9 264 90-426 13-280 (289)
42 2q58_A Fragment, farnesyl pyro 100.0 1.8E-57 6.2E-62 461.3 18.5 284 113-426 59-359 (368)
43 4fp4_A Polyprenyl synthetase; 100.0 9.2E-53 3.2E-57 411.3 12.7 223 85-336 3-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 3.8E-48 1.3E-52 378.2 24.1 203 92-315 5-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 8.7E-47 3E-51 368.5 25.0 201 92-316 10-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.4 0.21 7.1E-06 48.3 18.6 132 241-403 106-237 (294)
47 3acx_A Dehydrosqualene synthas 94.6 0.32 1.1E-05 46.9 12.3 135 240-404 109-243 (293)
48 3vj8_A Squalene synthase; farn 94.0 0.54 1.8E-05 46.6 12.8 145 233-403 112-256 (343)
49 3v1v_A 2-MIB synthase, 2-methy 79.6 29 0.001 35.1 14.2 96 223-321 246-346 (433)
50 3aqb_A Component A of hexapren 79.6 3.2 0.00011 35.6 5.7 46 209-254 71-116 (147)
51 3kb9_A EPI-isozizaene synthase 76.5 61 0.0021 31.8 16.1 95 227-321 172-269 (382)
52 3g4d_A (+)-delta-cadinene synt 68.8 1.2E+02 0.004 31.8 16.0 91 229-321 363-459 (554)
53 3n0f_A Isoprene synthase; terp 63.4 81 0.0028 33.0 13.2 88 233-321 365-457 (555)
54 1ps1_A Pentalenene synthase; a 60.8 1.1E+02 0.0039 28.8 16.0 99 223-321 125-227 (337)
55 3m00_A Aristolochene synthase; 60.4 1.2E+02 0.004 31.7 13.8 91 228-321 358-454 (550)
56 1di1_A Aristolochene synthase; 60.4 1.1E+02 0.0037 28.4 14.7 65 258-322 150-214 (300)
57 3bny_A Aristolochene synthase; 50.5 1.6E+02 0.0056 27.5 13.1 64 258-321 164-227 (320)
58 2q80_A Geranylgeranyl pyrophos 48.7 1.7E+02 0.0058 27.8 11.9 47 286-344 38-84 (301)
59 3mzv_A Decaprenyl diphosphate 48.4 1.5E+02 0.0052 28.7 11.7 54 279-344 59-112 (341)
60 2ong_A 4S-limonene synthase; m 47.2 1.9E+02 0.0064 30.0 12.8 89 232-321 355-448 (543)
61 3rmg_A Octaprenyl-diphosphate 44.4 1.1E+02 0.0038 29.6 9.9 53 281-345 55-107 (334)
62 4fp4_A Polyprenyl synthetase; 41.6 1.3E+02 0.0043 28.7 9.6 52 281-344 53-107 (285)
63 3nf2_A Putative polyprenyl syn 40.9 96 0.0033 30.3 8.9 54 279-344 60-113 (352)
64 1n1b_A (+)-bornyl diphosphate 37.1 1.5E+02 0.0051 30.8 10.1 88 233-321 362-455 (549)
65 3sdr_A Alpha-bisabolene syntha 36.9 1.6E+02 0.0054 32.3 10.6 87 233-321 626-721 (817)
66 2ftz_A Geranyltranstransferase 36.3 2.5E+02 0.0086 26.4 10.8 52 281-344 54-107 (284)
67 1yyq_A Trichodiene synthase; t 34.5 3.4E+02 0.012 26.6 16.2 152 176-349 91-252 (374)
68 3lsn_A Geranyltranstransferase 33.4 34 0.0012 32.9 4.2 81 167-248 205-299 (304)
69 3p5p_A Taxadiene synthase; cla 33.2 1.7E+02 0.0057 31.9 10.0 88 232-321 566-659 (764)
70 3uca_A Geranyltranstransferase 32.1 57 0.002 31.7 5.6 62 167-229 233-306 (324)
71 3m0g_A Farnesyl diphosphate sy 30.1 1.4E+02 0.0046 28.5 7.8 60 169-229 200-271 (297)
72 1v4e_A Octoprenyl-diphosphate 29.0 2E+02 0.0068 27.3 8.8 50 283-344 50-100 (299)
73 3aqb_B Component B of hexapren 27.9 2.6E+02 0.009 26.7 9.6 52 281-344 52-103 (325)
74 4f62_A Geranyltranstransferase 27.6 74 0.0025 30.8 5.5 62 167-229 204-277 (317)
75 4dhd_A Polyprenyl synthetase; 26.1 2.3E+02 0.0077 27.7 8.8 52 281-344 53-104 (358)
76 3lmd_A Geranylgeranyl pyrophos 26.1 2.2E+02 0.0074 27.9 8.6 52 281-344 82-134 (360)
77 3pko_A Geranylgeranyl pyrophos 25.7 2.4E+02 0.008 27.2 8.8 51 282-344 64-115 (334)
78 1rtr_A Geranyltranstransferase 24.9 54 0.0019 31.4 3.9 62 167-229 200-273 (301)
79 3oyr_A Trans-isoprenyl diphosp 24.4 2.1E+02 0.0072 27.8 8.2 39 279-317 71-109 (345)
80 2e8v_A Geranylgeranyl pyrophos 24.0 4.4E+02 0.015 25.2 10.4 48 285-344 52-99 (340)
81 2h8o_A Geranyltranstransferase 22.9 67 0.0023 31.3 4.2 62 167-229 244-317 (335)
82 3ts7_A Geranyltranstransferase 22.7 1.1E+02 0.0037 29.7 5.6 63 167-230 211-285 (324)
83 2azj_A Geranylgeranyl pyrophos 22.5 3.1E+02 0.01 25.9 8.7 52 281-344 57-108 (289)
84 1wy0_A Geranylgeranyl pyrophos 21.5 2.6E+02 0.009 26.8 8.2 51 282-344 55-105 (342)
85 3lom_A Geranyltranstransferase 20.6 88 0.003 30.1 4.4 62 167-229 212-285 (313)
86 3pde_A Farnesyl-diphosphate sy 20.0 5.1E+02 0.018 24.6 9.8 52 281-344 56-111 (309)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=5.4e-72 Score=562.53 Aligned_cols=316 Identities=30% Similarity=0.435 Sum_probs=266.6
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
+.+.+.++.++++.|++.|++.+.+.+|.+.++++|++..| |||+||.|++++++++|++.+
T Consensus 24 ~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~---------------- 85 (345)
T 3oyr_A 24 VDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND---------------- 85 (345)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH----------------
Confidence 55667889999999999999999999999999999999988 999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++||+.++..+++++++.+++++..+
T Consensus 86 -~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~ 163 (345)
T 3oyr_A 86 -HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGA-QSVLVGDFLFARAFELMVETNSMKALEILARASRVI 163 (345)
T ss_dssp -THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
++||++|+.+..+...++++|++|+.+|||+||++||++|++++|++++..+.+++||+++|+||||+||++||+++++.
T Consensus 164 ~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~ 243 (345)
T 3oyr_A 164 AEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATET 243 (345)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999998877899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhC-cHHHHH----HHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEF-PQLRTV----VEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 399 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~-~~l~~~----l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 399 (427)
+|||.|+||++||+|+|++++++.. ++.++. +.+...+++++++++++|.++|++++|++++++|.++|.+.|+.
T Consensus 244 ~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~ 323 (345)
T 3oyr_A 244 LGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAM 323 (345)
T ss_dssp -------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 444444 43333456789999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014276 400 LPENNDEDVTKSRRALLDLTHRVITRN 426 (427)
Q Consensus 400 lp~~~~~~~~~~r~~L~~l~~~v~~R~ 426 (427)
||+++ +++.|.+|++++++|+
T Consensus 324 lp~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 324 FPAND------WREALEELADFAVSRR 344 (345)
T ss_dssp SCSSH------HHHHHHHHHHHHHHC-
T ss_pred CCCcH------HHHHHHHHHHHHHhcc
Confidence 99988 9999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=3.2e-71 Score=556.57 Aligned_cols=317 Identities=29% Similarity=0.495 Sum_probs=281.9
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 163 (427)
+.+.+.++.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|++.+
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~--------------- 73 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP--------------- 73 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 45567889999999999999999988 899999999999988 999999999999999987542
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014276 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEH 243 (427)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~ 243 (427)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++..+++++++.+++++..
T Consensus 74 --~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 150 (341)
T 3mzv_A 74 --FHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNK-SSVLVGDYLFARSFQLMTDTGNMRVMEILANASAV 150 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHH-HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 014276 244 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 323 (427)
Q Consensus 244 l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~ 323 (427)
++.||++|+.+..+...++++|++|+.+|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++
T Consensus 151 ~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~ 230 (341)
T 3mzv_A 151 IAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSA 230 (341)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 99999999999887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccCcccHHHHHHhhhCc-H----HHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014276 324 SLGKGSLSDIRHGIITAPILFAMEEFP-Q----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398 (427)
Q Consensus 324 ~~GK~~~~Dl~eGk~TlPvl~Al~~~~-~----l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 398 (427)
.+|||.|+||++||+|+|+++|++..+ . +.+++.+...+++++++++++|.++|++++|+.++++|.++|.+.|+
T Consensus 231 ~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~ 310 (341)
T 3mzv_A 231 EIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALA 310 (341)
T ss_dssp -----CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998754 2 34555554456789999999999999999999999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 399 SLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 399 ~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.||+++ +++.|.+|++++++|++
T Consensus 311 ~lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 311 KLPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp TSCCCH------HHHHHHHHHHHHTGGGC
T ss_pred hCCCCH------HHHHHHHHHHHHHhccc
Confidence 999988 99999999999999974
No 3
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=8.7e-72 Score=562.94 Aligned_cols=342 Identities=80% Similarity=1.158 Sum_probs=277.4
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
..+++..+.+|++.|++.|++.+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+.+...+..+..+.++.
T Consensus 7 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (348)
T 3apz_A 7 ELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELR 86 (348)
T ss_dssp -CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchh
Confidence 67788899999999999999999999999999999999865559999999999999999864321100000000112334
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l 244 (427)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|+..++...+.++++.+++++..+
T Consensus 87 ~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 165 (348)
T 3apz_A 87 VRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK-MSVLAGDFLLSRACGALAALKNTEVVALLATAVEHL 165 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------CCHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCch-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
++||++|+.+..+...++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++||+++++.
T Consensus 166 ~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~ 245 (348)
T 3apz_A 166 VTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245 (348)
T ss_dssp HHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhh
Confidence 99999999887656689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
+|||.|+||++||+|+|+++|++..+++++++.+.+.+++++++++++|.++|++++|++++++|.++|.+.|+.||+++
T Consensus 246 ~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~ 325 (348)
T 3apz_A 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETD 325 (348)
T ss_dssp TTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999988999999888888889999999999999999999999999999999999999875
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 014276 405 DEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 405 ~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.......++.|..|++++++|++
T Consensus 326 ~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 326 NEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccHHHHHHHHHHHHHHHhCcC
Confidence 22222268999999999999975
No 4
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.1e-70 Score=551.58 Aligned_cols=318 Identities=26% Similarity=0.430 Sum_probs=298.2
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
.+++|+.+.+|++.|++.|++.+.+.+|.+.+++.|++..| |||+||.|++++++ +|++.+ .
T Consensus 14 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~ 75 (334)
T 3pko_A 14 LWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------P 75 (334)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------H
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------H
Confidence 78999999999999999999999999999999999999988 99999999999999 664211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEH 243 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-~~v~~~ls~~~~~ 243 (427)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++...+ +++++.+++++..
T Consensus 76 ~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 154 (334)
T 3pko_A 76 AQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQR-NAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHR 154 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCch-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999 9999999999999999998765 8999999999999
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 014276 244 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 323 (427)
Q Consensus 244 l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~ 323 (427)
++.||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 155 ~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~ 234 (334)
T 3pko_A 155 ILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPK 234 (334)
T ss_dssp HHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 99999999998877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccCcccHHHHHHhhhCc-HHHHHHH-cccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014276 324 SLGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 401 (427)
Q Consensus 324 ~~GK~~~~Dl~eGk~TlPvl~Al~~~~-~l~~~l~-~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 401 (427)
.+|||.|+||++||+|+|+++|++..+ ++++++. +...++++++++++++.++|++++|++++++|.++|.+.|+.||
T Consensus 235 ~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp 314 (334)
T 3pko_A 235 RTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLP 314 (334)
T ss_dssp SCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999865 6777773 44457889999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 402 ENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 402 ~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+++ +++.|.+|++++++|++
T Consensus 315 ~~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 315 VGS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp SSH------HHHHHHHHHHHHTTCC-
T ss_pred CcH------HHHHHHHHHHHHHhccC
Confidence 988 99999999999999975
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-70 Score=551.59 Aligned_cols=315 Identities=28% Similarity=0.382 Sum_probs=272.8
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 014276 86 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (427)
Q Consensus 86 ~~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (427)
.+.+..+.++|+.|+..|++.+.+.+|.+.++.+|++..| |||+||.|++++++++|++. +
T Consensus 7 ~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 67 (334)
T 3rmg_A 7 SLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------P 67 (334)
T ss_dssp HHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------H
Confidence 3456789999999999999999999999999999999988 99999999999999998643 3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014276 166 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 245 (427)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~ 245 (427)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|+..++..+++++++.+++++..++
T Consensus 68 ~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 146 (334)
T 3rmg_A 68 ATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNK-VSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLA 146 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999 9999999999999999999889999999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 014276 246 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 325 (427)
Q Consensus 246 ~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 325 (427)
.||++|+.+..+...++++|++|+.+|||+||+++|++|++++|++++..+.++.||.++|+||||+||++|++ +++.+
T Consensus 147 ~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~ 225 (334)
T 3rmg_A 147 EGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKI 225 (334)
T ss_dssp HHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC---
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-Chhhc
Confidence 99999999988777899999999999999999999999999999999999999999999999999999999999 57899
Q ss_pred CCCCccccccCcccHHHHHHhhhC-----cHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014276 326 GKGSLSDIRHGIITAPILFAMEEF-----PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 400 (427)
Q Consensus 326 GK~~~~Dl~eGk~TlPvl~Al~~~-----~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 400 (427)
|||.|+||++||+|+|+++|++.. +.+.+++.+...++++++++++++.++|++++|+.++++|.++|.+.|+.|
T Consensus 226 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~l 305 (334)
T 3rmg_A 226 GKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAAL 305 (334)
T ss_dssp ---CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874 246677777777889999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 401 PENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 401 p~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
|+++ +++.|.+|++++++|.+
T Consensus 306 p~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 306 PDSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CCCH------HHHHHHHHHHHHHHCC-
T ss_pred CCcH------HHHHHHHHHHHHHhccc
Confidence 9888 99999999999999975
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=4.4e-70 Score=550.89 Aligned_cols=314 Identities=29% Similarity=0.432 Sum_probs=275.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 014276 87 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (427)
Q Consensus 87 ~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (427)
+.+..+.++++.|++.|++.+.+.+|.+.++++|++..| |||+||.|++++++++|.... +.
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~ 96 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------EN 96 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HH
Confidence 456789999999999999999999999999999999988 999999999999998872221 36
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014276 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 246 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~ 246 (427)
+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++.++ +++++.+++++..++.
T Consensus 97 ~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~ 174 (360)
T 3lmd_A 97 VIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNS-VAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVT 174 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHH-HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChH-HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 999999999999999999876 5899999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccC
Q 014276 247 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 326 (427)
Q Consensus 247 Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~G 326 (427)
||++|+.+..+. .++++|++|+.+|||+||+++|++|++++|++++..+.++.||.++|+||||+||++|++++++.+|
T Consensus 175 GQ~ldl~~~~~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~G 253 (360)
T 3lmd_A 175 GQMRETVGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESG 253 (360)
T ss_dssp HHHHHHHCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhccCCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhC
Confidence 999999998776 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhC----cHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014276 327 KGSLSDIRHGIITAPILFAMEEF----PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 402 (427)
Q Consensus 327 K~~~~Dl~eGk~TlPvl~Al~~~----~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~ 402 (427)
||.|+||++||+|+|+++|++.. +.+.+++.+...+++++++++++|.++|++++|+.++++|.++|.+.|+.||+
T Consensus 254 K~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~ 333 (360)
T 3lmd_A 254 KTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPD 333 (360)
T ss_dssp --CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999874 34666776666678899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014276 403 NNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 403 ~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
++ +++.|.+|++++++|+.
T Consensus 334 ~~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 334 ST------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp SH------HHHHHHHHHHHHHHTTS
T ss_pred cH------HHHHHHHHHHHHHHhcc
Confidence 88 99999999999999963
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.4e-69 Score=546.51 Aligned_cols=313 Identities=25% Similarity=0.344 Sum_probs=288.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH-----------hcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchh
Q 014276 89 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 157 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~-----------~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~ 157 (427)
..+++.-...|+..|++.+.+.+|.+.+++.|.+ ..| |||+||.|++++++++|++.
T Consensus 6 ~~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~---------- 73 (352)
T 3nf2_A 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAP---------- 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCG----------
T ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCH----------
Confidence 3567777788999999999999999999999998 566 99999999999999998753
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCH---HHH
Q 014276 158 ALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT---EVV 234 (427)
Q Consensus 158 ~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~---~v~ 234 (427)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++..+++ +++
T Consensus 74 -------~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~ 145 (352)
T 3nf2_A 74 -------EVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPA-QAILVGDALFALANEVLLELGTVEAGRAT 145 (352)
T ss_dssp -------GGGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 2578899999999999999999999999999999999999999 99999999999999999999887 789
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhh
Q 014276 235 TLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDD 314 (427)
Q Consensus 235 ~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DD 314 (427)
+++++++..+++||++|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.++.||++||+||||+||
T Consensus 146 ~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 225 (352)
T 3nf2_A 146 RRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDD 225 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887788999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCccccccCcccHHHHHHhhhC-c---HHHHHHHcc-------cCChhHHHHHHHHHHhcchHHHHH
Q 014276 315 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTR 383 (427)
Q Consensus 315 llD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~-~---~l~~~l~~~-------~~~~~~~~~i~~li~~sg~i~~a~ 383 (427)
++||+++++.+|||.|+||++||+|+|+++|++.. | ++.+++.+. ..+++++++++++|.++|++++|+
T Consensus 226 ~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~ 305 (352)
T 3nf2_A 226 LLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTA 305 (352)
T ss_dssp HHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHH
Confidence 99999999999999999999999999999999874 3 456666553 246788999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhccC
Q 014276 384 ELAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 384 ~~a~~~~~~A~~~L~~lp~-~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+++++|.++|.+.|+.+|+ ++ +|+.|..|++++++|++
T Consensus 306 ~~a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 306 DEARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhccc
Confidence 9999999999999999998 55 89999999999999963
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-69 Score=545.49 Aligned_cols=316 Identities=28% Similarity=0.387 Sum_probs=291.3
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 86 LDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 86 ~~~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
.+.+..+.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|++.
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~----------------- 65 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP----------------- 65 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------
Confidence 3456788899999999999999877 789999999999988 99999999999999987642
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----KNTEVVTLLAT 239 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~-----~~~~v~~~ls~ 239 (427)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|+..++.. .+.++++.+++
T Consensus 66 ~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (342)
T 1wy0_A 66 LRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVN-MAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVK 144 (342)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHH-HHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChh-HHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHH
Confidence 1467899999999999999999999999999999999999999 99999999999999999987 45689999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 014276 240 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 319 (427)
Q Consensus 240 ~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~ 319 (427)
++..++.||++|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++
T Consensus 145 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988777899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccccccCcccHHHHHHhhhC-cHHHHHHHcccCC---------------hhHHHHHHHHHHhcchHHHHH
Q 014276 320 GTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFED---------------SSNVDIALEYLGKSRGIQKTR 383 (427)
Q Consensus 320 g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~-~~l~~~l~~~~~~---------------~~~~~~i~~li~~sg~i~~a~ 383 (427)
++++.+|||.|+||++||+|+|++++++.. +..++.+.+.+.. +++++++++++.++|++++++
T Consensus 225 ~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~ 304 (342)
T 1wy0_A 225 ADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAA 304 (342)
T ss_dssp SCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHH
Confidence 999999999999999999999999999875 3455555544432 568899999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 384 ELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 384 ~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+++++|.++|.+.|+.+|+++ .++.|..|++++++|++
T Consensus 305 ~~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 305 EIAKDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 999999999999999999887 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=6.9e-69 Score=537.09 Aligned_cols=313 Identities=27% Similarity=0.412 Sum_probs=290.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 014276 87 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (427)
Q Consensus 87 ~~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (427)
..+..+.++++.|++.|++.+...+|.+.++++|++..| |||+||.|++++++++|++. +.
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~~ 65 (325)
T 3aqb_B 5 SYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------DD 65 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------HH
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HH
Confidence 446678899999999999999888899999999999988 99999999999999997642 26
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014276 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 246 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~ 246 (427)
+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++...++++++.+++++..+++
T Consensus 66 ~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 144 (325)
T 3aqb_B 66 LIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKD-TAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCF 144 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccC
Q 014276 247 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 326 (427)
Q Consensus 247 Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~G 326 (427)
||++|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 145 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 224 (325)
T 3aqb_B 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224 (325)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcC
Confidence 99999999877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCc-----HHH---HHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014276 327 KGSLSDIRHGIITAPILFAMEEFP-----QLR---TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398 (427)
Q Consensus 327 K~~~~Dl~eGk~TlPvl~Al~~~~-----~l~---~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 398 (427)
||.|+||++||+|+|++++++..+ .+. +.+.+.. .+++++++++++.++ ++++++..+++|.++|.+.|+
T Consensus 225 K~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~ 302 (325)
T 3aqb_B 225 KPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTS-DDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLS 302 (325)
T ss_dssp SCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTC-CHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998743 233 3332222 267899999999999 999999999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 399 SLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 399 ~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.+|+++ .++.|..+++++++|++
T Consensus 303 ~lp~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 303 QLQDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp TSCCCH------HHHHHHHHHHHHTTTTC
T ss_pred hCCCcH------HHHHHHHHHHHHHhCcC
Confidence 999988 89999999999999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.2e-67 Score=533.70 Aligned_cols=310 Identities=25% Similarity=0.350 Sum_probs=279.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (427)
..+++..++.|++.|++.+... +|.+.+++.|++..| |||+||.|++++++++|++.. .+
T Consensus 7 ~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~ 67 (358)
T 4dhd_A 7 SRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR-----------------PA 67 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCCG-----------------GG
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HH
Confidence 3566778889999999999887 789999999999988 999999999999999987532 57
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Q 014276 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVT 246 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-~~v~~~ls~~~~~l~~ 246 (427)
..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++.... .++++.+++++..++.
T Consensus 68 ~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
T 4dhd_A 68 LPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDN-AAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDE 146 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHH-HHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 9999999999999999977654 6899999999999999
Q ss_pred HHHHhhccc-----------CCC-CCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhh
Q 014276 247 GETMQMTTS-----------SDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDD 314 (427)
Q Consensus 247 Gq~~dl~~~-----------~~~-~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DD 314 (427)
||.+|+.+. .+. ..++++|++|+.+|||+||++||++|++++|++++..+.++.||.++|+||||+||
T Consensus 147 GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 226 (358)
T 4dhd_A 147 GERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDD 226 (358)
T ss_dssp HHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 444 67999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCccccccCcc-cHHHHHHhhhC-c----HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHH
Q 014276 315 VLDFTGTSASLGKGSLSDIRHGII-TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVK 388 (427)
Q Consensus 315 llD~~g~~~~~GK~~~~Dl~eGk~-TlPvl~Al~~~-~----~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~ 388 (427)
++|++|+++.+|||.|+||++||+ |+|+++|++.. + .+.+++.+...+++++++++++|.++|++++|++++++
T Consensus 227 ~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~ 306 (358)
T 4dhd_A 227 VLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAAR 306 (358)
T ss_dssp HHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 999999999999999999999999 99999999874 3 36667777666788999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 389 HANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 389 ~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
|.++|.+.|+.||+++ .|.+|++++++|++
T Consensus 307 ~~~~A~~~L~~lp~~~---------~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 307 YREEAERHLAKIPNNG---------TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHHHHTTSSSCH---------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCCCH---------HHHHHHHHHHhccc
Confidence 9999999999999543 89999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-67 Score=526.48 Aligned_cols=306 Identities=25% Similarity=0.265 Sum_probs=276.9
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHH
Q 014276 93 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 172 (427)
Q Consensus 93 ~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 172 (427)
......|++.|.+.+...+|.+.++++|++..| |||+||.|++++++++|++. +.+..+|+
T Consensus 6 ~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~ 66 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAPL-----------------EAGLEAAT 66 (330)
T ss_dssp HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHH
Confidence 355667888898888878889999999999988 99999999999999998631 36789999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHH
Q 014276 173 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTG 247 (427)
Q Consensus 173 avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-----~~v~~~ls~~~~~l~~G 247 (427)
++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++...+ .++++.+++++..++.|
T Consensus 67 avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 145 (330)
T 1wmw_A 67 ALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMP-LALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYG 145 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCCccccccCch-HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999987543 78999999999999999
Q ss_pred HHHhhcc-cCC-CCCCHHHHHHHHhhhhcch-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 248 ETMQMTT-SSD-QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 248 q~~dl~~-~~~-~~~s~~~Yl~ii~~KTasL-~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
|++|+.+ ..+ ...++++|++|+++|||+| |++||++|++++|++++.. +++||.++|+||||+||++|++++++
T Consensus 146 Q~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~- 222 (330)
T 1wmw_A 146 QHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA- 222 (330)
T ss_dssp HHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-
Confidence 9999998 776 6789999999999999999 9999999999999987766 99999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCc-HHHHHHHccc----CC--hhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGF----ED--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 397 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~-~l~~~l~~~~----~~--~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L 397 (427)
+|||.|+||++||+|+|+++|++..+ +.++.+.+.+ .+ +++++++++++.++|++++|++++++|.++|.+.|
T Consensus 223 ~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L 302 (330)
T 1wmw_A 223 YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALL 302 (330)
T ss_dssp CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754 3333343322 22 67899999999999999999999999999999999
Q ss_pred c----cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 398 D----SLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 398 ~----~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+ .+|+++ .++.|..|++++++|++
T Consensus 303 ~~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 303 EAAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp HTGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred HHHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 9 999877 89999999999999975
No 12
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=4.8e-66 Score=510.63 Aligned_cols=281 Identities=24% Similarity=0.384 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHH
Q 014276 92 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171 (427)
Q Consensus 92 i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 171 (427)
+.+|++.|++.|++.+...+| ++++|++..| |||+||.|++++++++|++.+ +.+..+|
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A 67 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISSL 67 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHHH
Confidence 567899999999998877666 8999999988 999999999999999986221 2578899
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 014276 172 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 251 (427)
Q Consensus 172 ~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~d 251 (427)
+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++...++++++.+++++..++.||++|
T Consensus 68 ~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 146 (299)
T 1v4e_A 68 AALELVHLASLLHDDVIDGARFRRGKETINFMYGDK-AAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIE 146 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999888999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCcc
Q 014276 252 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 331 (427)
Q Consensus 252 l~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~ 331 (427)
+.+..+. .++++|++|+.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+
T Consensus 147 l~~~~~~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~ 221 (299)
T 1v4e_A 147 QLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFL 221 (299)
T ss_dssp HHHTTSC-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSC
T ss_pred HHccCCC-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcch
Confidence 9988776 899999999999999999999999999999977 78999999999999999999999999 999999999
Q ss_pred ccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 332 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 332 Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
||++||+|+|++++++..+.+++++.+ ++++++++++.++|++++|+++++.|.++|.+.|+.||+..
T Consensus 222 Dl~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 222 DLKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp CCTTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HhhCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999987667777754 57889999999999999999999999999999999999887
No 13
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=5.5e-65 Score=517.60 Aligned_cols=321 Identities=23% Similarity=0.286 Sum_probs=265.4
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhcchH---HHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014276 86 LDPFSLVADELSILAKRLRSMVVAEVPK---LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 162 (427)
Q Consensus 86 ~~~~~~i~~el~~v~~~l~~~~~~~~p~---l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~ 162 (427)
.+....++++|+.+.......+....|. +.+.+.|++..| |||+||.|++++++++|+..+.. .
T Consensus 19 ~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~-----------~ 85 (380)
T 3lk5_A 19 DKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS-----------E 85 (380)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------S
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------C
Confidence 4455678888887777666665554554 566677888888 99999999999999998741100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccc----------------cCchhHHHHHHHHHHHHHHHHHH
Q 014276 163 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV----------------MGNKVLAVLAGDFLLSRACVALA 226 (427)
Q Consensus 163 ~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~----------------~G~~~~AVl~GD~Lla~a~~~la 226 (427)
..+.++.+|+++||||+||||||||||+|++|||+||+|.+ ||++ .|||+||||+++|+++++
T Consensus 86 ~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~-~AIL~GD~Ll~~A~~~l~ 164 (380)
T 3lk5_A 86 KLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVS-VSILAGDMALVWAEDMLQ 164 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 12478899999999999999999999999999999999997 6999 999999999999999999
Q ss_pred cCCC-----HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcch-HHHHHHHHHHHcCCCHHHHHHHHH
Q 014276 227 SLKN-----TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFD 300 (427)
Q Consensus 227 ~~~~-----~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL-~~~a~~~gailag~~~~~~~~l~~ 300 (427)
..+. .+++..++.+...++.||++|+.+..+...++++|++|+.+|||+| |++||++|++++|++++..+.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~ 244 (380)
T 3lk5_A 165 DSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLH 244 (380)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8653 3567788888899999999999988777789999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhhC----cHHHHHHHccc---CChhHHHHHHHHH
Q 014276 301 YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF----PQLRTVVEQGF---EDSSNVDIALEYL 373 (427)
Q Consensus 301 ~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~----~~l~~~l~~~~---~~~~~~~~i~~li 373 (427)
||++||+||||+||++|++|+++.+|||.|+||++||+|+|+++|++.. |+.++.+.+.+ .+++++++++++|
T Consensus 245 ~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li 324 (380)
T 3lk5_A 245 YGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHI 324 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999863 44444443322 3578899999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHhccCCCC-CCcchHHHHHHHHHHHHHHHhcc
Q 014276 374 GKSRGIQKTRELAVKHANLAAAAIDSLPEN-NDEDVTKSRRALLDLTHRVITRN 426 (427)
Q Consensus 374 ~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~-~~~~~~~~r~~L~~l~~~v~~R~ 426 (427)
.++|+++++++++++|.++|++.|+.+|.+ + +|+.|.+|++++..|.
T Consensus 325 ~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~------~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 325 RATGAEEEVEQRISQLTESGLAHLDDVDIPDE------VRAQLRALAIRSTERR 372 (380)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH------HHHHHHHHHHHHHC--
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999964 5 8999999999999885
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=4.8e-65 Score=506.47 Aligned_cols=299 Identities=27% Similarity=0.348 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHhhh-cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHH
Q 014276 95 ELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173 (427)
Q Consensus 95 el~~v~~~l~~~~~~-~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 173 (427)
-+..|++.|.+.+.. ..|.+.+ .|.+..| |||+||.|++++++.. .. ....+++..+|++
T Consensus 5 ~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~g--GKrlRp~l~l~~~~~~-~~--------------~~~~~~~~~~A~a 65 (315)
T 3tc1_A 5 QLKAIQNKIASWIKEIESGFIDE--LFSKIGP--SKMLRSKLMLALLNEK-TD--------------AILLDKALNLCTI 65 (315)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH--HHTTCCC--CCCHHHHHHHTTCCTT-CC--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHH--HHHhcCC--cccHHHHHHHHHhccC-cc--------------ccchhhHHHHHHH
Confidence 356778888877764 3344433 5777777 9999999999987721 10 0112467899999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 014276 174 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMT 253 (427)
Q Consensus 174 vEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~ 253 (427)
+||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++..+ +++++.+++++..++.||++|+.
T Consensus 66 iEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~ 143 (315)
T 3tc1_A 66 VEMIQTASLLHDDVIDKATMRRKLPSINALFGNF-NAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVF 143 (315)
T ss_dssp HHHHHHHHHHHHHTC----------------CCS-HHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCch-HHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999887 89999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCcccc
Q 014276 254 TSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 333 (427)
Q Consensus 254 ~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl 333 (427)
+..+...++++|++|+.+|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+|||.|+||
T Consensus 144 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl 220 (315)
T 3tc1_A 144 VGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDF 220 (315)
T ss_dssp HTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTG
T ss_pred cCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHH
Confidence 98777889999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHhhhC-cHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHH
Q 014276 334 RHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 410 (427)
Q Consensus 334 ~eGk~TlPvl~Al~~~-~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~ 410 (427)
++||+|+|+++|++.. |..++.+.+.+. ++++++++++++.++|++++|+.++++|.++|.+.|+.||+++
T Consensus 221 ~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------ 294 (315)
T 3tc1_A 221 KEGKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------ 294 (315)
T ss_dssp GGTCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------
T ss_pred HcCChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------
Confidence 9999999999999974 444444443332 6788999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 014276 411 SRRALLDLTHRVI 423 (427)
Q Consensus 411 ~r~~L~~l~~~v~ 423 (427)
+|+.|..|++++.
T Consensus 295 ~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 295 LEKLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.8e-65 Score=515.20 Aligned_cols=304 Identities=18% Similarity=0.280 Sum_probs=239.6
Q ss_pred HHHHHHHHh---hhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 014276 99 LAKRLRSMV---VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (427)
Q Consensus 99 v~~~l~~~~---~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 175 (427)
|++.+.+.. ...++.+.+++.|++..| |||+||.|++++++++|.+. +.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH
Confidence 555555544 456678999999999988 99999999999999997631 25788999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHHHHH
Q 014276 176 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETM 250 (427)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~-----v~~~ls~~~~~l~~Gq~~ 250 (427)
|||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++...+++ +++.+++++..++.||++
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 149 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVP-STINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGL 149 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCch-HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999988776 999999999999999999
Q ss_pred hhcccCCC---CCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCC
Q 014276 251 QMTTSSDQ---RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 327 (427)
Q Consensus 251 dl~~~~~~---~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 327 (427)
|+.+..+. ..++++|++|+++|||+||+++|++|++++|+++ ..+.++.||.++|+||||+||++|++++++.+||
T Consensus 150 dl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK 228 (340)
T 2e8v_A 150 DIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEK 228 (340)
T ss_dssp HHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CC
T ss_pred HHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCC
Confidence 99876543 5699999999999999999999999999999987 5789999999999999999999999999999999
Q ss_pred CCccccccCcccHHHHHHhhhCcH---------HHHHHHcccCChhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH-
Q 014276 328 GSLSDIRHGIITAPILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA- 396 (427)
Q Consensus 328 ~~~~Dl~eGk~TlPvl~Al~~~~~---------l~~~l~~~~~~~~~~~~i~~li~-~sg~i~~a~~~a~~~~~~A~~~- 396 (427)
|.|+||++||+|+|+++|++..+. +..++.+...+.+..++++++|. ++|++++|++++++|.++|.+.
T Consensus 229 ~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~ 308 (340)
T 2e8v_A 229 GFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDN 308 (340)
T ss_dssp CTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC-
T ss_pred CchhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999986432 55666555444444558999999 9999999999999999999999
Q ss_pred ----hccCCCCCCcchHHHHHHHHHHHHHHHh
Q 014276 397 ----IDSLPENNDEDVTKSRRALLDLTHRVIT 424 (427)
Q Consensus 397 ----L~~lp~~~~~~~~~~r~~L~~l~~~v~~ 424 (427)
|+.||+++.. ...+|+.|..|++++.+
T Consensus 309 ~~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 309 ENKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp --------------------------------
T ss_pred CcccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 9999987511 11278899999998864
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=2.1e-65 Score=506.62 Aligned_cols=292 Identities=21% Similarity=0.264 Sum_probs=254.7
Q ss_pred HHHHhhhcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 014276 103 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 182 (427)
Q Consensus 103 l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsL 182 (427)
+++.+.+.+|.+.++.+|++..| |||+||.|++++++++|.+. +.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 46677778889999999999988 99999999999999997631 257889999999999999
Q ss_pred hccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCC
Q 014276 183 LHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCS 261 (427)
Q Consensus 183 IHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s 261 (427)
|||||||+|++|||+||+|.+||++ .|||+||||+++|++.++..+++++++.+++++..++.||++|+.+..+. ..+
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~ 141 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPT 141 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHccccCCCCCCCCCcchhhccCcH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999 99999999999999999998888899999999999999999999875443 679
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHH
Q 014276 262 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 341 (427)
Q Consensus 262 ~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlP 341 (427)
+++|++|+++|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||+|+|
T Consensus 142 ~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p 217 (301)
T 2q80_A 142 EEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHH
Confidence 9999999999999999999999999999873 489999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCc---HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 014276 342 ILFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 418 (427)
Q Consensus 342 vl~Al~~~~---~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l 418 (427)
+++|++..| .+.+++.+...+.+..+.++++|.++|++++|++++++|.++|.+.|+.+|+++ .|..+
T Consensus 218 ~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l 288 (301)
T 2q80_A 218 TIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVAL 288 (301)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHH
T ss_pred HHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHH
Confidence 999998754 366666655444444445999999999999999999999999999999999876 38999
Q ss_pred HHHHHhccC
Q 014276 419 THRVITRNK 427 (427)
Q Consensus 419 ~~~v~~R~k 427 (427)
++++..|.|
T Consensus 289 ~~~l~~~~~ 297 (301)
T 2q80_A 289 VKHLSKMFK 297 (301)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHhc
Confidence 999988754
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.4e-63 Score=496.71 Aligned_cols=282 Identities=26% Similarity=0.353 Sum_probs=241.4
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 161 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~ 161 (427)
..+.+..++++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 30 ~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~------------- 94 (324)
T 3uca_A 30 LEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK------------- 94 (324)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-------------
Confidence 55667789999999999999999865 778999999999989 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC---C---HHH
Q 014276 162 ELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK---N---TEV 233 (427)
Q Consensus 162 ~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~---~---~~v 233 (427)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.+++.. . .++
T Consensus 95 ----~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~ 169 (324)
T 3uca_A 95 ----KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEA-IAVLAGDALLNEAMKILVDYSLEEGKSALKA 169 (324)
T ss_dssp ----GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 5678999999999999999999 99999999999999999999 999999999999999998743 1 467
Q ss_pred HHHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Q 014276 234 VTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 311 (427)
Q Consensus 234 ~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI 311 (427)
++.++++. ..++.||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||
T Consensus 170 i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI 249 (324)
T 3uca_A 170 TKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQI 249 (324)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888876 6899999999999877678999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014276 312 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 391 (427)
Q Consensus 312 ~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~ 391 (427)
+||++|++++++.+|||+|+|+++||+|+|++++ ++++++.+++|.+
T Consensus 250 ~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~~ 296 (324)
T 3uca_A 250 KDDILDVVGNAKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNITE 296 (324)
T ss_dssp HHHHHHHCCC-----------------CHHHHHC---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 4789999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 392 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 392 ~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+|.+.|+.||++. +.|.+|++++++|++
T Consensus 297 ~A~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 297 ECIEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 9999999999754 789999999999975
No 18
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=8.6e-63 Score=499.78 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (427)
Q Consensus 112 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (427)
+.+.++..|.+ .| |||+||.|++++++++|++.+.+ ......+.+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46888888887 48 99999999999999997642100 00001122334458899999999999999999999
Q ss_pred CCCCCCCCcccccCc--hhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhccc---------
Q 014276 192 DTRRGIGSLNFVMGN--KVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS--------- 255 (427)
Q Consensus 192 ~~RRG~pt~h~~~G~--~~~AVl~GD~Lla~a~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~--------- 255 (427)
++|||+||+|.+||+ + .|||+||||+++|+..++.. .+.++++++++++..++.||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~-~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~ 183 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQ-CAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPE 183 (362)
T ss_dssp CEETTEECGGGSTTTHHH-HHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTT
T ss_pred CCCCCCccHHhccCccHh-HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 999999999999999 7 89999999999999999875 457899999999999999999999886
Q ss_pred --C--CC---CCCHHHHHHHHhhhhcch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccC
Q 014276 256 --S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 326 (427)
Q Consensus 256 --~--~~---~~s~~~Yl~ii~~KTasL-~~~a~~~gailag-~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~G 326 (427)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|
T Consensus 184 ~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~G 263 (362)
T 1yhl_A 184 VAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLG 263 (362)
T ss_dssp SCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred cccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhC
Confidence 3 22 479999999999999999 9999999999999 8888889999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhC-cHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014276 327 KGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 403 (427)
Q Consensus 327 K~~~~Dl~eGk~TlPvl~Al~~~-~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 403 (427)
| .|+||++||+|+|+++|++.. ++.++.+.+.+. ++++++++++++.++|+++++++++++|.++|.+.|+.||++
T Consensus 264 K-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 342 (362)
T 1yhl_A 264 K-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVK 342 (362)
T ss_dssp S-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred C-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9 999999999999999999875 445555554443 367899999999999999999999999999999999999999
Q ss_pred CCcchHHHH--HHHHHHHHHHHhccC
Q 014276 404 NDEDVTKSR--RALLDLTHRVITRNK 427 (427)
Q Consensus 404 ~~~~~~~~r--~~L~~l~~~v~~R~k 427 (427)
+ .+ +.|..|++++++|+|
T Consensus 343 ~------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 343 S------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp C------HHHHHHHHHHHHHHHTCCC
T ss_pred c------hhHHHHHHHHHHHHHhccC
Confidence 8 88 999999999999986
No 19
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=7.5e-63 Score=491.47 Aligned_cols=279 Identities=27% Similarity=0.328 Sum_probs=241.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 014276 87 DPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (427)
Q Consensus 87 ~~~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 163 (427)
+....+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 8 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~--------------- 70 (324)
T 3ts7_A 8 SLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD--------------- 70 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 445678888999999999988753 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--C------HHH
Q 014276 164 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N------TEV 233 (427)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~--~------~~v 233 (427)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++||+.++... + .++
T Consensus 71 --~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~-~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~ 147 (324)
T 3ts7_A 71 --LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEA-TAILAGDGLQALAFHVLAQDPSIAVPAENRIAM 147 (324)
T ss_dssp --GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChH-HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 5689999999999999999999 99999999999999999999 999999999999999999874 2 257
Q ss_pred HHHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHh
Q 014276 234 VTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQ 310 (427)
Q Consensus 234 ~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~~~~~~~l~~~G~~lGiAFQ 310 (427)
++.+++++ ..|+.||.+|+.+..+ ..++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+|||
T Consensus 148 i~~la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQ 226 (324)
T 3ts7_A 148 IETLAKASGPAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQ 226 (324)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888875 7899999999998776 7899999999999999999999999999999 899999999999999999999
Q ss_pred hhhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014276 311 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 390 (427)
Q Consensus 311 I~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 390 (427)
|+||++|++++++.+|||.|+|+++||+|+|+++ +++++++.+++|.
T Consensus 227 I~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~ 273 (324)
T 3ts7_A 227 IQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMH 273 (324)
T ss_dssp HHHHHHHHTCC---------------CCCHHHHH---------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 4688999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 391 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 391 ~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
++|.+.|+.||++ ++.|.+|++++++|++
T Consensus 274 ~~A~~~L~~l~~~--------~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 274 EAALESLAGFGPE--------ADLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHHTTTTCCGG--------GHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCcc--------HHHHHHHHHHHHhccC
Confidence 9999999999874 3789999999999974
No 20
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.6e-62 Score=487.72 Aligned_cols=279 Identities=27% Similarity=0.378 Sum_probs=229.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 014276 87 DPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (427)
Q Consensus 87 ~~~~~i~~el~~v~~~l~~~~~~~--~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 164 (427)
+....+++....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 4 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~----------------- 64 (317)
T 4f62_A 4 NLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS----------------- 64 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------
Confidence 344567788889999999988764 678999999999988 99999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC------HHHHHH
Q 014276 165 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN------TEVVTL 236 (427)
Q Consensus 165 ~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~------~~v~~~ 236 (427)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++...+ .++++.
T Consensus 65 ~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~ 143 (317)
T 4f62_A 65 SLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEA-TAILAGDALQTFAFELLSNPTSAQPELAIKLIQE 143 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHH-HHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 36789999999999999999999 99999999999999999999 9999999999999999998642 257788
Q ss_pred HHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhh
Q 014276 237 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLID 313 (427)
Q Consensus 237 ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~~~~~~~l~~~G~~lGiAFQI~D 313 (427)
+++++ ..|+.||.+|+.+... ..++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+|
T Consensus 144 la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~D 222 (317)
T 4f62_A 144 LVVASGRNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQD 222 (317)
T ss_dssp HHHHHSTTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 4799999999998754 5899999999999999999999999999999 899999999999999999999999
Q ss_pred hcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014276 314 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 393 (427)
Q Consensus 314 DllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 393 (427)
|++|++++++.+|||.|+|+++||+|+|+++ ++++|++.+++|.++|
T Consensus 223 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A 269 (317)
T 4f62_A 223 DIIDLTSDTETLGKTQFSDAEANKATYPKLL---------------------------------GLDGAKALVVRLHEQA 269 (317)
T ss_dssp HHHHTC----------------CCCCHHHHH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHhhCCCcchHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4688999999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 394 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 394 ~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
++.|+.||+ .++.|.+|++++++|++
T Consensus 270 ~~~L~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 270 IAQISEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHHHGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 999999985 35899999999999974
No 21
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=6.3e-63 Score=488.71 Aligned_cols=273 Identities=27% Similarity=0.347 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHhhh--cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHH
Q 014276 95 ELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 172 (427)
Q Consensus 95 el~~v~~~l~~~~~~--~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 172 (427)
....|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++. +.+..+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEY-----------------ELGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCG-----------------GGGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHH
Confidence 455688888888765 5678999999999988 99999999999999998642 14578999
Q ss_pred HHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH--H
Q 014276 173 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--E 242 (427)
Q Consensus 173 avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~------~~~~v~~~ls~~~--~ 242 (427)
++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++||+.++.. ...++++.+++++ .
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~ 148 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEW-TAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHV 148 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Confidence 999999999999999 99999999999999999999 99999999999999999987 3456888999988 8
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 014276 243 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 322 (427)
Q Consensus 243 ~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~ 322 (427)
.++.||++|+.+..+ ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 149 ~~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 149 GMVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp THHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 899999999998766 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014276 323 ASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 402 (427)
Q Consensus 323 ~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~ 402 (427)
+.+|||.|+|+++||+|+|++++ ++++++.+++|.++|.+.|+.||+
T Consensus 228 ~~~GK~~g~Dl~~gK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~ 274 (301)
T 1rtr_A 228 AKLGKKVGSDLENNKSTYVSLLG---------------------------------KDGAEDKLTYHRDAAVDELTQIDE 274 (301)
T ss_dssp CC-------------CCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHhCCCcchHHHcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999996 357899999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014276 403 NNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 403 ~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
++ .++.|.+|++++++|++
T Consensus 275 ~~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 275 QF------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp TS------CCHHHHHHHHHHHCC--
T ss_pred ch------HHHHHHHHHHHHHHhhc
Confidence 77 67899999999999974
No 22
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.1e-62 Score=492.70 Aligned_cols=277 Identities=25% Similarity=0.314 Sum_probs=236.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhh--------cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHh
Q 014276 89 FSLVADELSILAKRLRSMVVA--------EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 160 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~--------~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~ 160 (427)
...+.++++.|++.|++.+.. .++.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 40 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~------------- 104 (335)
T 2h8o_A 40 ETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA------------- 104 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-------------
Confidence 456778889999999998866 4678999999999988 99999999999999998641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-----CH
Q 014276 161 TELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL--K-----NT 231 (427)
Q Consensus 161 ~~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~--~-----~~ 231 (427)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.+++. + ..
T Consensus 105 ----~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~ 179 (335)
T 2h8o_A 105 ----EAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEA-TAILAGDSLLTLAFDIIASDDNPLAAERKA 179 (335)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHSTTSCSCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChH-HHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 25788999999999999999999 99999999999999999999 99999999999999999987 1 24
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014276 232 EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAY 309 (427)
Q Consensus 232 ~v~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAF 309 (427)
++++.+++++ ..++.||++|+.+..+ ..++++|++|+.+|||+||+++|++|++++|++++..+.+++||.++|+||
T Consensus 180 ~~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAF 258 (335)
T 2h8o_A 180 ALVISLARAAGIGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSF 258 (335)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6888999998 8899999999988765 789999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHH
Q 014276 310 QLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 389 (427)
Q Consensus 310 QI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~ 389 (427)
||+||++|++++++.+|||.|+|+++||+|+|++++ ++++++.+++|
T Consensus 259 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~ 305 (335)
T 2h8o_A 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHC-----------------CCCHHHHHC---------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999994 47899999999
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 390 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 390 ~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.++|.+.|+.||+ .++.|.+|++++++|++
T Consensus 306 ~~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 306 VAEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 9999999999984 35789999999999974
No 23
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=5.4e-63 Score=489.04 Aligned_cols=280 Identities=26% Similarity=0.381 Sum_probs=255.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (427)
...+.+++..|++.|++.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 4 ~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 64 (299)
T 1rqj_A 4 PQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------N 64 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3567788899999999988764 678999999999988 99999999999999998642 3
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--------CHHHHH
Q 014276 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--------NTEVVT 235 (427)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~--------~~~v~~ 235 (427)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++... ..++++
T Consensus 65 ~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~-~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 143 (299)
T 1rqj_A 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEA-NAILAGDALQTLAFSILSDADMPEVSDRDRISMIS 143 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChH-HHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHH
Confidence 6789999999999999999999 99999999999999999999 999999999999999999851 235788
Q ss_pred HHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhh
Q 014276 236 LLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLI 312 (427)
Q Consensus 236 ~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gail-ag~~~~~~~~l~~~G~~lGiAFQI~ 312 (427)
.+++++ ..++.||++|+.+..+ ..++++|++|+.+|||+||++||++|+++ +|++++..+.+++||.++|+||||+
T Consensus 144 ~l~~~~g~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~ 222 (299)
T 1rqj_A 144 ELASASGIAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQ 222 (299)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888886 7999999999998766 78999999999999999999999999999 9988889999999999999999999
Q ss_pred hhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014276 313 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 392 (427)
Q Consensus 313 DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 392 (427)
||++|++++++.+|||.|+|+++||+|+|+++++ ++++..+++|.++
T Consensus 223 DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~ 269 (299)
T 1rqj_A 223 DDILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDD 269 (299)
T ss_dssp HHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999964 4688999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 393 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 393 A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
|.+.|+.+|++.. .++.|.+|++++++|++
T Consensus 270 A~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 270 ARQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 9999999987331 57899999999999975
No 24
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=2.4e-62 Score=484.68 Aligned_cols=277 Identities=28% Similarity=0.367 Sum_probs=240.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (427)
..++......|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------- 64 (304)
T 3lsn_A 4 TAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKPE----------------- 64 (304)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCGG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------
Confidence 4567788889999999998765 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----C----HHHHH
Q 014276 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK----N----TEVVT 235 (427)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~----~----~~v~~ 235 (427)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++... + .++++
T Consensus 65 ~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~ 143 (304)
T 3lsn_A 65 QANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEA-CAILAGDGLQSLAFSALLDPALSDASAEIRLRMVT 143 (304)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHH-HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 5788999999999999999999 99999999999999999999 999999999999999999874 2 35788
Q ss_pred HHHHHHH--HHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhhh
Q 014276 236 LLATVVE--HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLI 312 (427)
Q Consensus 236 ~ls~~~~--~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~-~~~~~~~l~~~G~~lGiAFQI~ 312 (427)
.+++++. .|+.||.+|+.+..+ ..++++|++|+.+|||+||++||++|++++|+ +++..+.+++||.++|+||||+
T Consensus 144 ~l~~a~~~~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~ 222 (304)
T 3lsn_A 144 TLAQAAGPAGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQ 222 (304)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHchhhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888874 599999999998765 48999999999999999999999999999999 8889999999999999999999
Q ss_pred hhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014276 313 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 392 (427)
Q Consensus 313 DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 392 (427)
||++|++++++.+|||.|+|+++||+|||+++ +++++++.++++.++
T Consensus 223 DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~ 269 (304)
T 3lsn_A 223 DDILDVESDTATLGKRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRDQ 269 (304)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHH---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhccCChHHhCCCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 468899999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 393 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 393 A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
|.+.|+.||+ .++.|.+|++++++|++
T Consensus 270 A~~~L~~l~~--------~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 270 ALHALRPFDA--------AAEPLRELARYIVERRS 296 (304)
T ss_dssp HHHHTTTSCG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 9999999985 35799999999999974
No 25
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-62 Score=483.17 Aligned_cols=276 Identities=30% Similarity=0.388 Sum_probs=235.9
Q ss_pred hHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHH
Q 014276 91 LVADELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168 (427)
Q Consensus 91 ~i~~el~~v~~~l~~~~~~--~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (427)
+-+..+..|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++.. +.+.
T Consensus 13 ~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~ 74 (302)
T 3p8l_A 13 FSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDY 74 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHH
Confidence 4456778889999888875 3678999999999988 999999999999999987532 2578
Q ss_pred HHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV 241 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-----~~v~~~ls~~~ 241 (427)
.+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++.... .++++.+++++
T Consensus 75 ~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~ 153 (302)
T 3p8l_A 75 QVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEA-TAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAA 153 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999 9999999999999999998642 25778888887
Q ss_pred --HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 014276 242 --EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 319 (427)
Q Consensus 242 --~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~ 319 (427)
..|+.||++|+.+... ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++
T Consensus 154 g~~~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~ 232 (302)
T 3p8l_A 154 GNQGMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDAT 232 (302)
T ss_dssp STTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999998754 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014276 320 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 399 (427)
Q Consensus 320 g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 399 (427)
++++.+|||.|+|+++||+|+|++++ ++++++.++++.++|.+.|+.
T Consensus 233 ~d~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 233 STEADLGKKVGRDEALNKSTYPALLG---------------------------------IAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp C-----------------CCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHhCCChhhHHhcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999994 578999999999999999999
Q ss_pred CCC---CCCcchHHHHHHHHHHHHHHHhc
Q 014276 400 LPE---NNDEDVTKSRRALLDLTHRVITR 425 (427)
Q Consensus 400 lp~---~~~~~~~~~r~~L~~l~~~v~~R 425 (427)
||+ ++ .++.|.+|++++++|
T Consensus 280 ~~~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 280 IKANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp HHHHCSSC------CHHHHHHHHHHTSCC
T ss_pred cccccCCh------hHHHHHHHHHHHhhC
Confidence 986 66 678999999999987
No 26
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=2.6e-62 Score=484.26 Aligned_cols=275 Identities=25% Similarity=0.344 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 014276 91 LVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (427)
Q Consensus 91 ~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (427)
-+...+..|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.. .+
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~ 72 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS-----------------DL 72 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG-----------------GT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HH
Confidence 56788899999999998764 568999999999988 999999999999999987532 57
Q ss_pred HHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--C------HHHHHHH
Q 014276 168 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N------TEVVTLL 237 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~--~------~~v~~~l 237 (427)
..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++... + .++++.+
T Consensus 73 ~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 151 (302)
T 3p8r_A 73 DTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEA-TAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQAL 151 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHCCC--------------H-HHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHH-HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 89999999999999999999 99999999999999999999 999999999999999999874 1 2578888
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhh
Q 014276 238 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDD 314 (427)
Q Consensus 238 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~~~~~~~l~~~G~~lGiAFQI~DD 314 (427)
++++ ..++.||.+|+.+.. ...++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||
T Consensus 152 ~~a~g~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 152 AEASGAQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp HHHHSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 689999999999874 46899999999999999999999999999999 7888889999999999999999999
Q ss_pred cccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014276 315 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 394 (427)
Q Consensus 315 llD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~ 394 (427)
++|++++++.+|||.|+|+++||+|+|++++ ++++++.+++|.++|.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~ 277 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKSTYPALLG---------------------------------LEGAQQKAHTLLQEAL 277 (302)
T ss_dssp HHHHTTC---------------CCCHHHHHH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCCcchHHhcCCchHHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999994 5789999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 395 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 395 ~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+.|+.||++. +.|.+|++++++|++
T Consensus 278 ~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 278 LALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp HHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred HHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999999764 689999999999975
No 27
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.1e-61 Score=493.16 Aligned_cols=296 Identities=18% Similarity=0.196 Sum_probs=261.2
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (427)
Q Consensus 112 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (427)
+.+.++.+|.. .| |||+||.|++++++++|++... +.+..+.+..+|+++||||+||||||||||+|
T Consensus 64 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~s 130 (374)
T 2qis_A 64 ARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDSS 130 (374)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 46888999877 58 9999999999999999863210 01223357789999999999999999999999
Q ss_pred CCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCC
Q 014276 192 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 261 (427)
Q Consensus 192 ~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 261 (427)
++|||+||+|.+||++..||++||+|++.++..++.. .+.++++++++++..++.||++|+.+..+. ..+
T Consensus 131 ~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 210 (374)
T 2qis_A 131 LTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFT 210 (374)
T ss_dssp CEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCC
T ss_pred CCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCC
Confidence 9999999999999987469999999999999988864 346899999999999999999999886542 379
Q ss_pred HHHHHHHHhhhhcch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCccc
Q 014276 262 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 339 (427)
Q Consensus 262 ~~~Yl~ii~~KTasL-~~~a~~~gailag-~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~T 339 (427)
+++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| +|+||++||+|
T Consensus 211 ~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T 289 (374)
T 2qis_A 211 EKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCS 289 (374)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCcc
Confidence 999999999999999 9999999999999 99999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhC-cHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014276 340 APILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 416 (427)
Q Consensus 340 lPvl~Al~~~-~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~ 416 (427)
||++++++.. ++.++.+.+.+. ++++++++++++.++|+.++++..+++|.++|.+.|+.||+++ .++.|.
T Consensus 290 ~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L~ 363 (374)
T 2qis_A 290 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVFL 363 (374)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHH
Confidence 9999999875 456666655554 3678999999999999999999999999999999999999988 899999
Q ss_pred HHHHHHHhccC
Q 014276 417 DLTHRVITRNK 427 (427)
Q Consensus 417 ~l~~~v~~R~k 427 (427)
.|++++++|+|
T Consensus 364 ~l~~~i~~R~k 374 (374)
T 2qis_A 364 GLARKIYKRRK 374 (374)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHcCcC
Confidence 99999999986
No 28
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=3.4e-62 Score=498.83 Aligned_cols=326 Identities=17% Similarity=0.162 Sum_probs=269.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhc-------chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhH
Q 014276 87 DPFSLVADELSILAKRLRSMVVAE-------VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 159 (427)
Q Consensus 87 ~~~~~i~~el~~v~~~l~~~~~~~-------~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~ 159 (427)
+....+.+-+..+++.|.+.+.+. .+.+.++.+|.+ .| |||+||+||+++++++|+..+.. + + ...
T Consensus 24 ~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~-~--~~~ 96 (390)
T 3dyh_A 24 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-N-G--EED 96 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-c-c--ccc
Confidence 344445555556666665554432 235888999998 78 99999999999999987511000 0 0 000
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHH--HHHHHcC-CC--
Q 014276 160 ATELRTRQQCIAE----ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALASL-KN-- 230 (427)
Q Consensus 160 ~~~~~~~~~~lA~----avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a--~~~la~~-~~-- 230 (427)
.....+...++|+ ++||||+||||||||||+|++|||+||+|..||++ .||++||+|+..+ +.+++.. .+
T Consensus 97 ~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~-~ail~gD~ll~~a~a~~ll~~~~~~~~ 175 (390)
T 3dyh_A 97 DGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVT-VQCAINDGLLLKSWTHMMAMHFFADRP 175 (390)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCC-HHHHHHHHHHHHHHHHHHHHHHSTTCT
T ss_pred ccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChH-HHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 0001234555665 79999999999999999999999999999999999 9999999999765 5777653 22
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhccc----------CC------CCCCHHHHHHHHhhhhcch-HHHHHHHHHHHcCCC
Q 014276 231 --TEVVTLLATVVEHLVTGETMQMTTS----------SD------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT 291 (427)
Q Consensus 231 --~~v~~~ls~~~~~l~~Gq~~dl~~~----------~~------~~~s~~~Yl~ii~~KTasL-~~~a~~~gailag~~ 291 (427)
.++++++++++..++.||++|+.+. .. ...++++|++|+++|||+| |++||++|++++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~ 255 (390)
T 3dyh_A 176 FLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEAL 255 (390)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC
Confidence 3789999999999999999999872 11 2579999999999999999 999999999999998
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhh-CcHHHHHHHcccC--ChhHHH
Q 014276 292 AEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNVD 367 (427)
Q Consensus 292 ~~~-~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~-~~~l~~~l~~~~~--~~~~~~ 367 (427)
++. .+.++.||.+||+||||+||++|++|+++.+|| +|+||++||+|||+++|++. .|+.++.+.+.+. ++++++
T Consensus 256 ~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~ 334 (390)
T 3dyh_A 256 PTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVA 334 (390)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHH
Confidence 774 788999999999999999999999999999999 99999999999999999998 4666666666553 578899
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH--HHHHHHHHHHHHhccC
Q 014276 368 IALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS--RRALLDLTHRVITRNK 427 (427)
Q Consensus 368 ~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~--r~~L~~l~~~v~~R~k 427 (427)
++++++.++|++++++.+++++.++|.+.|+.||+++ . ++.|..|++++++|+|
T Consensus 335 ~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~------~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 335 TVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS------PGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999988 5 8999999999999987
No 29
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.6e-62 Score=498.10 Aligned_cols=317 Identities=18% Similarity=0.178 Sum_probs=254.1
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhh-cc-----hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhh
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVA-EV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 158 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~-~~-----p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~ 158 (427)
+.+.|+.+.+++.... .+.... +. +.+.++..|.. .| |||+||+||+++++++|++..
T Consensus 36 f~~~~~~~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~---------- 99 (395)
T 2ihi_A 36 FRNMYDKYRDAFLSHL---NEYSLEEEIKEHISKYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDI---------- 99 (395)
T ss_dssp TTTTHHHHHHHHHHHH---HTSSCCHHHHHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---C----------
T ss_pred HHHHHHHHHHHHHHHH---hhCCCChhhhhhHHHHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCC----------
Confidence 6666766666654432 221111 11 45778899988 68 999999999999999986421
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhH--HHHHHHHHHHHHHHHHHcC-C----CH
Q 014276 159 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVL--AVLAGDFLLSRACVALASL-K----NT 231 (427)
Q Consensus 159 ~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~--AVl~GD~Lla~a~~~la~~-~----~~ 231 (427)
+.+..+.+..+|+++||||+||||||||||+|++|||+||+|++||+. . |||+||+|++.++.+++.. . ..
T Consensus 100 -~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~-~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~ 177 (395)
T 2ihi_A 100 -NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVE-TKNAVNDVLLLYNSIYKLIEIYLRNESCYV 177 (395)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCcc-HHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence 112235788999999999999999999999999999999999999999 8 9999999999999998763 1 26
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-c-----------------cC--CC----CCCHHHHHHHHhhhhcch-HHHHHHHHHH
Q 014276 232 EVVTLLATVVEHLVTGETMQMT-T-----------------SS--DQ----RCSMDYYMQKTYYKTASL-ISNSCKAIAL 286 (427)
Q Consensus 232 ~v~~~ls~~~~~l~~Gq~~dl~-~-----------------~~--~~----~~s~~~Yl~ii~~KTasL-~~~a~~~gai 286 (427)
++++++++++..++.||.+|+. | .. .. ..++++|++|+.+|||+| |.+||.+|++
T Consensus 178 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~ 257 (395)
T 2ihi_A 178 DVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGML 257 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 8999999999999999999992 1 11 11 578999999999999999 9999999999
Q ss_pred HcCCCHHH--HHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHHhhh-CcHHHHHHHcccC--
Q 014276 287 LAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE-- 361 (427)
Q Consensus 287 lag~~~~~--~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~-~~~l~~~l~~~~~-- 361 (427)
++|++++. .+.++.||.+||+||||+||++|++|+++.+|| .|+||++||+|+|++++++. .|+.++.+.+.+.
T Consensus 258 lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~ 336 (395)
T 2ihi_A 258 LAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 336 (395)
T ss_dssp HTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-C
T ss_pred HcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 99998887 899999999999999999999999999999999 99999999999999999998 4666666655443
Q ss_pred ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014276 362 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426 (427)
Q Consensus 362 ~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~ 426 (427)
++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .++.|..|++++++|.
T Consensus 337 ~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 337 NLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp CHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH------HHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhccC
Confidence 5678999999999999999999999999999999999999987 9999999999999984
No 30
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=5.3e-61 Score=486.93 Aligned_cols=296 Identities=20% Similarity=0.198 Sum_probs=261.4
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (427)
Q Consensus 112 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (427)
+.+.++++|.+ .| |||+||.|++++++++|++.+. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 46889999988 48 9999999999999999763110 01222357899999999999999999999999
Q ss_pred CCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCC
Q 014276 192 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 261 (427)
Q Consensus 192 ~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 261 (427)
++|||+||+|.+||++..+|+.||++++.|+..++.. .+.++++++++++..++.||++|+.+..+. ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999998346666666678899998874 346899999999999999999999886532 579
Q ss_pred HHHHHHHHhhhhcch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCccc
Q 014276 262 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 339 (427)
Q Consensus 262 ~~~Yl~ii~~KTasL-~~~a~~~gailag-~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~T 339 (427)
+++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++|+++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhh-CcHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014276 340 APILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 416 (427)
Q Consensus 340 lPvl~Al~~-~~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~ 416 (427)
||++++++. .++.++.+.+.+. ++++++++++++.++|+.++++..+++|.++|.+.|+.+|+++ .++.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 999999987 4566666665553 3678999999999999888999999999999999999999888 899999
Q ss_pred HHHHHHHhccC
Q 014276 417 DLTHRVITRNK 427 (427)
Q Consensus 417 ~l~~~v~~R~k 427 (427)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 31
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=1.1e-61 Score=478.50 Aligned_cols=274 Identities=27% Similarity=0.327 Sum_probs=226.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (427)
..++++....|++.|.+.+... ++.+.++++|. ..| |||+||.|++++++++|++. +.+
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~ 63 (297)
T 3m0g_A 4 SERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGISM-----------------AQA 63 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCCH-----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCCH-----------------HHH
Confidence 3567777888999999988765 56899999999 878 99999999999999998642 368
Q ss_pred HHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--C----HHHHHHHHH
Q 014276 168 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK--N----TEVVTLLAT 239 (427)
Q Consensus 168 ~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~--~----~~v~~~ls~ 239 (427)
..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++... . .++++.+++
T Consensus 64 ~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~ 142 (297)
T 3m0g_A 64 MPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDA-TAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQ 142 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 89999999999999999999 99999999999999999999 999999999999999998864 2 368889999
Q ss_pred HH--HHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014276 240 VV--EHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 316 (427)
Q Consensus 240 ~~--~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDll 316 (427)
++ ..++.||.+|+.+.. ....++++|++|+.+|||+||++||++|++++|++++ .+++||.+||+||||+||++
T Consensus 143 ~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDil 219 (297)
T 3m0g_A 143 ASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDIL 219 (297)
T ss_dssp HHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC
T ss_pred HHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 98 889999999998862 3468999999999999999999999999999999876 79999999999999999999
Q ss_pred cccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014276 317 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396 (427)
Q Consensus 317 D~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 396 (427)
|++++++.+|||.|+|+++||+|+|++++ ++++++.++++.++|.+.
T Consensus 220 D~~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~ 266 (297)
T 3m0g_A 220 DVEGNEEAAGKRLGKDAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEAA 266 (297)
T ss_dssp ---------------------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 467889999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 397 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 397 L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
|+.||++. +.|.+|++++++|++
T Consensus 267 L~~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 267 LAPYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp TGGGGGGG--------HHHHHHHHHHTC---
T ss_pred HHhCCCCH--------HHHHHHHHHHHHhcc
Confidence 99998754 689999999999974
No 32
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.9e-61 Score=478.57 Aligned_cols=279 Identities=24% Similarity=0.329 Sum_probs=241.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~--~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (427)
...+++.+..|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.. .
T Consensus 9 ~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~ 69 (309)
T 3pde_A 9 IAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------P 69 (309)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------H
Confidence 3467788888999999888765 678999999999988 999999999999999987543 4
Q ss_pred H--HHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHH
Q 014276 167 Q--QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-----TEVVTLL 237 (427)
Q Consensus 167 ~--~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-----~~v~~~l 237 (427)
. ..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++||+.++.... .++++.+
T Consensus 70 ~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l 148 (309)
T 3pde_A 70 ERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAG-MATLAGDGLLTLAFQWLTATDLPATMQAALVQAL 148 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 5 78999999999999999999 99999999999999999999 9999999999999999998653 2678889
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 014276 238 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 315 (427)
Q Consensus 238 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDl 315 (427)
++++ ..++.||.+|+.+... ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||+
T Consensus 149 ~~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 149 ATAAGPSGMVAGQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHhHHHHhHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 6899999999998754 679999999999999999999999999999999998999999999999999999999
Q ss_pred ccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 014276 316 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 395 (427)
Q Consensus 316 lD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~ 395 (427)
+|++++++.+|||+|+|+++||+|||+++++ +.++..++++.++|.+
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al---------------------------------~~a~~~~~~~~~~a~~ 274 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKNTYPGKLGL---------------------------------IGANQALIDTIHSGQA 274 (309)
T ss_dssp HHHHCC-----------CTTTSSSHHHHHCH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHHHH---------------------------------HHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999954 6678889999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 396 AIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 396 ~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.|+.+|.+- ..+.|.+|++++++|++
T Consensus 275 ~l~~~~~~~------~~~~L~~l~~~~~~r~~ 300 (309)
T 3pde_A 275 ALQGLPTST------QRDDLAAFFSYFDTERV 300 (309)
T ss_dssp HHHTSCCCH------HHHHHHGGGGGSCTTTT
T ss_pred HHHHhhhcc------CHHHHHHHHHHHHHhhc
Confidence 999987653 22229999999999964
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=2e-61 Score=479.57 Aligned_cols=277 Identities=26% Similarity=0.363 Sum_probs=237.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 014276 89 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (427)
Q Consensus 89 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (427)
...+++....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 10 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 70 (313)
T 3lom_A 10 KQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------G 70 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3456667778999999888753 678999999999988 99999999999999998742 3
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----C----HHHHH
Q 014276 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK----N----TEVVT 235 (427)
Q Consensus 166 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~----~----~~v~~ 235 (427)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++||+.++... . .+++.
T Consensus 71 ~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~ 149 (313)
T 3lom_A 71 VLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEA-TAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQ 149 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6889999999999999999999 99999999999999999999 999999999999999998752 1 24777
Q ss_pred HHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhh
Q 014276 236 LLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQL 311 (427)
Q Consensus 236 ~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag--~~~~~~~~l~~~G~~lGiAFQI 311 (427)
.+++++ ..++.||.+|+.+..+...++++|++|+.+|||+||+++|++ |+++| ++++..+.+++||.++|+||||
T Consensus 150 ~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI 228 (313)
T 3lom_A 150 VLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQM 228 (313)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888876 689999999999987767899999999999999999999999 99999 8999999999999999999999
Q ss_pred hhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014276 312 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 391 (427)
Q Consensus 312 ~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~ 391 (427)
+||++|++++++.+|||.|+|+++||+|+|+++ +++++++.++++.+
T Consensus 229 ~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~ 275 (313)
T 3lom_A 229 QDDYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQ 275 (313)
T ss_dssp HHHHHHHHCC---------------CCCHHHHS---------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHhhCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 46889999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 392 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 392 ~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
+|.+.|+.||++ ++.|.+|++++++|++
T Consensus 276 ~A~~~L~~l~~~--------~~~L~~la~~~~~R~~ 303 (313)
T 3lom_A 276 IAMDSLRLFGSK--------AAALIELTKQLQNRSN 303 (313)
T ss_dssp HHHHTTTTTGGG--------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcc--------HHHHHHHHHHHHhccc
Confidence 999999999864 3689999999999963
No 34
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=4.8e-61 Score=473.54 Aligned_cols=272 Identities=26% Similarity=0.391 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHhhhc-chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 014276 96 LSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174 (427)
Q Consensus 96 l~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 174 (427)
+..|++.|.+.+... .|.+.++++|.+..| |||+||.|++++++++|++.. .+..+|+++
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~av 71 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAV 71 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHH
Confidence 466777777777653 378999999999988 999999999999999987532 567899999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 014276 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 254 (427)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~ 254 (427)
||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.++... .++++.+++++..++.||++|+.+
T Consensus 72 EliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~ 149 (295)
T 3ipi_A 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPS-GALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKL 149 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHH-HHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCcCcCCCCCCCCCccHHHhcCcc-HHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHc
Confidence 999999999999999999999999999999999 999999999999999998764 789999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccc
Q 014276 255 SSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 334 (427)
Q Consensus 255 ~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~ 334 (427)
..+ ..++++|++++++|||+||++||++|++++|++++..+.+++||+++|+||||+||++|+++++. || |+.
T Consensus 150 ~~~-~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~ 222 (295)
T 3ipi_A 150 EDE-SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESK 222 (295)
T ss_dssp -------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--------
T ss_pred cCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----Ccc
Confidence 765 37889999999999999999999999999999999999999999999999999999999999874 65 578
Q ss_pred cCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHH
Q 014276 335 HGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRA 414 (427)
Q Consensus 335 eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~ 414 (427)
+||+|+|+||+++..+ .+++++|++++++|.++|++.|+.||+++ .++.
T Consensus 223 ~gk~Tlp~l~al~~~~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~ 271 (295)
T 3ipi_A 223 FTSETLPHIYMKSTSK-------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDK 271 (295)
T ss_dssp ---CCHHHHHTTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHH
T ss_pred cCcccHHHHHHHhcCc-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHH
Confidence 9999999999986532 24689999999999999999999999988 8999
Q ss_pred HHHHHHHHHhcc
Q 014276 415 LLDLTHRVITRN 426 (427)
Q Consensus 415 L~~l~~~v~~R~ 426 (427)
|.+|+++++.|.
T Consensus 272 L~~l~~~~~~~~ 283 (295)
T 3ipi_A 272 LFQITDYITVDM 283 (295)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
No 35
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.9e-60 Score=487.62 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=238.7
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 014276 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 192 (427)
Q Consensus 113 ~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~ 192 (427)
.+..+..|.+. | |||+||+|++++++++++.... .+..+.+..+|++|||||+||||||||||+|+
T Consensus 67 ~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 35556667764 8 9999999999999999874321 23345788999999999999999999999999
Q ss_pred CCCCCCCcccccCchhHHHHHHHHHHH--HHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhcccCC--------
Q 014276 193 TRRGIGSLNFVMGNKVLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD-------- 257 (427)
Q Consensus 193 ~RRG~pt~h~~~G~~~~AVl~GD~Lla--~a~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~-------- 257 (427)
+|||+||+|.+||++ .||++||+|+. .++.++... ...++++.+++++..+|+||.+|+.+..+
T Consensus 133 ~RRG~pt~h~~~g~~-~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 211 (395)
T 3mav_A 133 MRRNKYCWYLLKDVE-TKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHRE 211 (395)
T ss_dssp EETTEECGGGSTTTH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CC
T ss_pred CCCCchhhhhccchH-HHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 999999999999999 99999999774 456665532 23678999999999999999999865321
Q ss_pred ----------------CCCCHHHHHHHHhhhhcch-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhhhhhcccc
Q 014276 258 ----------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDF 318 (427)
Q Consensus 258 ----------------~~~s~~~Yl~ii~~KTasL-~~~a~~~gailag~~--~~~~~~l~~~G~~lGiAFQI~DDllD~ 318 (427)
...++++|++|+++|||+| |.+||.+|++++|++ ....+.+++||.+||+||||+||+||+
T Consensus 212 ~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~ 291 (395)
T 3mav_A 212 IDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp CCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2468999999999999999 899999999999975 346789999999999999999999999
Q ss_pred cccccccCCCCccccccCcccHHHHHHhhhC-cHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 014276 319 TGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 395 (427)
Q Consensus 319 ~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~-~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~ 395 (427)
+|+++.+|| +|+||++||+|||+++|++.. +..+..+.+.+. ++++++.+.+++.++|+.+++++.++++.++|.+
T Consensus 292 ~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~ 370 (395)
T 3mav_A 292 FGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILS 370 (395)
T ss_dssp C---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 999999999 699999999999999999874 455555544443 5677889999999999999999999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014276 396 AIDSLPENNDEDVTKSRRALLDLTHRVITR 425 (427)
Q Consensus 396 ~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R 425 (427)
.|+.+|... .+..|..+++++.++
T Consensus 371 ~l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 371 AINELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHHhCCcHH------HHHHHHHHHHHHhcC
Confidence 999999776 777888888877664
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-60 Score=468.32 Aligned_cols=265 Identities=26% Similarity=0.334 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHhhh-cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 014276 96 LSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174 (427)
Q Consensus 96 l~~v~~~l~~~~~~-~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 174 (427)
.++|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++. +.+..+|+++
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~av 75 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAV 75 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHH
Confidence 34567777776633 3568999999999988 99999999999999998641 3578899999
Q ss_pred HHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 014276 175 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 252 (427)
Q Consensus 175 EliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl 252 (427)
||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.+++.++.++++.+++++..++.||++|+
T Consensus 76 EliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl 154 (284)
T 2ftz_A 76 ELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGED-IALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDV 154 (284)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999 99999999999999999999 99999999999999999998777999999999999999999999
Q ss_pred cccCCC-CCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCcc
Q 014276 253 TTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 331 (427)
Q Consensus 253 ~~~~~~-~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~ 331 (427)
.+..+. ..++++|++|+++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|||.|+
T Consensus 155 ~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~ 231 (284)
T 2ftz_A 155 EFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGK 231 (284)
T ss_dssp HHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC------
T ss_pred HhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcch
Confidence 987665 78999999999999999999999999999999876 89999999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH
Q 014276 332 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 411 (427)
Q Consensus 332 Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~ 411 (427)
|++ |+|+|++++ ++++++++++|.++|.+.|+.||+ + .
T Consensus 232 Dl~--K~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~------~ 269 (284)
T 2ftz_A 232 DTE--XVTLVXXVG---------------------------------IQXAREMADXYYEEVLXGIESEGL-F------R 269 (284)
T ss_dssp -------CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-H------H
T ss_pred hcc--ccchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-h------h
Confidence 999 999999995 467899999999999999999987 6 7
Q ss_pred HHH-HHHHHHHHHhc
Q 014276 412 RRA-LLDLTHRVITR 425 (427)
Q Consensus 412 r~~-L~~l~~~v~~R 425 (427)
++. |.+|++++++|
T Consensus 270 ~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 270 TLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 888 99999999987
No 37
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=5.8e-62 Score=492.30 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=254.2
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (427)
Q Consensus 112 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 191 (427)
+.+.++..|.. .| |||+||+|++++++++|+..+. ..+.+..+|+++||||+||||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~-------------~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc-------------cHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 45777888877 68 9999999999999999763211 12478899999999999999999999999
Q ss_pred CCCCCCCCcccccCchhHHHHHHHHHH---HHHHHHHHcC-C---CHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCH-
Q 014276 192 DTRRGIGSLNFVMGNKVLAVLAGDFLL---SRACVALASL-K---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM- 262 (427)
Q Consensus 192 ~~RRG~pt~h~~~G~~~~AVl~GD~Ll---a~a~~~la~~-~---~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~- 262 (427)
++|||+||+|.+||+. .|||+||||+ ++++.+++.. . ..++++++++++..++.||++|+.+.... ..+.
T Consensus 122 ~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~ 200 (368)
T 2her_A 122 KFRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKIS 200 (368)
T ss_dssp CEETTEECHHHHTHHH-HHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHH
T ss_pred CCCCCCccHHhcCChH-HHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChH
Confidence 9999999999999999 9999999999 8888887753 2 24789999999999999999999987643 4455
Q ss_pred HHHHHHHhhhhcch-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCccc
Q 014276 263 DYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 339 (427)
Q Consensus 263 ~~Yl~ii~~KTasL-~~~a~~~gailag~~~~~--~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~T 339 (427)
++|++|+++|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++ .+|| .|+||++||+|
T Consensus 201 ~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T 275 (368)
T 2her_A 201 ERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLT 275 (368)
T ss_dssp HHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCccc
Confidence 99999999999999 999999999999998887 8899999999999999999999999 7899 99999999999
Q ss_pred HHHHHHhhh-CcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 014276 340 APILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 418 (427)
Q Consensus 340 lPvl~Al~~-~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l 418 (427)
||+++|++. .|+.++.+.+.+..++ +++++++.++|+++++++++++|.++|.+.|+.+|+++ .|+.|..|
T Consensus 276 ~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l 347 (368)
T 2her_A 276 WPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHL 347 (368)
T ss_dssp HHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHH
Confidence 999999987 5677777777666554 89999999999999999999999999999999999987 99999999
Q ss_pred HHHHHhc
Q 014276 419 THRVITR 425 (427)
Q Consensus 419 ~~~v~~R 425 (427)
++++.++
T Consensus 348 ~~~i~~~ 354 (368)
T 2her_A 348 IHQISEL 354 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=3.4e-58 Score=456.09 Aligned_cols=273 Identities=24% Similarity=0.292 Sum_probs=227.9
Q ss_pred HHHHHHHHhhh---cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 014276 99 LAKRLRSMVVA---EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (427)
Q Consensus 99 v~~~l~~~~~~---~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 175 (427)
|++.|.+.+.. .+|.+.++++|.+..| |||+||.|++++++++|++.. ..+..+.+..+|+++|
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHH
Confidence 88888887743 5678999999999988 999999999999999986420 1122357889999999
Q ss_pred HHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHH--HHHHHH
Q 014276 176 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVT 246 (427)
Q Consensus 176 liH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~--~~~---~~v~~~ls~~--~~~l~~ 246 (427)
|||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++||+.++. +.+ .++++.++++ +..|+.
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~ 163 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDET-TAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMIL 163 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999 9999999999999999987 332 2477888888 579999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHhhhhhccccccccccc
Q 014276 247 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASL 325 (427)
Q Consensus 247 Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~-~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 325 (427)
||.+|+.+. +...++++|++|+.+|||+||++||++|++++|++++.. +.+++||.++|+||||+||++|++++++.+
T Consensus 164 GQ~lDl~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 242 (311)
T 3llw_A 164 GQALDCYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEES 242 (311)
T ss_dssp HHHHHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHhc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 999999886 456899999999999999999999999999999998888 899999999999999999999999999999
Q ss_pred CCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014276 326 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 405 (427)
Q Consensus 326 GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 405 (427)
||+.++ ++||+|||+++++ +.++..++++.++|.+.|+.|+.-..
T Consensus 243 GK~~g~--~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~~~ 287 (311)
T 3llw_A 243 GKTTHL--DSAKNSFVNLLGL---------------------------------ERANNYAQTLKTEVLNDLDALKPAYP 287 (311)
T ss_dssp ----------CCSCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHTTSTTTCH
T ss_pred Cccccc--ccCcchHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHhhhccccCc
Confidence 999877 9999999999954 66888999999999999999764220
Q ss_pred cchHHH-HHHHHHHHHHHHhcc
Q 014276 406 EDVTKS-RRALLDLTHRVITRN 426 (427)
Q Consensus 406 ~~~~~~-r~~L~~l~~~v~~R~ 426 (427)
. .+.|.+|++++++|.
T Consensus 288 -----~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 288 -----LLQENLNALLNTLFKGE 304 (311)
T ss_dssp -----HHHHHHHHHHHHHHC--
T ss_pred -----cHHHHHHHHHHHHHhcc
Confidence 2 578999999999995
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=2.4e-57 Score=446.11 Aligned_cols=266 Identities=24% Similarity=0.329 Sum_probs=220.4
Q ss_pred HHHHHHHHHHhh---hcchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHH
Q 014276 97 SILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173 (427)
Q Consensus 97 ~~v~~~l~~~~~---~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 173 (427)
+.+++.|.+.+. +.+|.+.++++|.+..| |||+||.|++++++++|++. .+.+..+|++
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~a 68 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALA 68 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHH
Confidence 446666666553 35678999999999988 99999999999999997531 1367899999
Q ss_pred HHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHH--HHHH
Q 014276 174 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHL 244 (427)
Q Consensus 174 vEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~-~----~~v~~~ls~~--~~~l 244 (427)
+||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++... . .++++.++++ +..+
T Consensus 69 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~ 147 (291)
T 3npk_A 69 LEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET-TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGM 147 (291)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999 99999999999999999999 999999999999999998754 2 3578889998 8999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014276 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324 (427)
Q Consensus 245 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~ 324 (427)
+.||.+|+.+.. ...++++|++|+++|||+||++||++||+++|++++..+.+++||.+||+||||+||++|++++++.
T Consensus 148 ~~GQ~lDl~~~~-~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~ 226 (291)
T 3npk_A 148 VIGQAIDCFFED-KRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQ 226 (291)
T ss_dssp HHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHH
Confidence 999999998865 3679999999999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014276 325 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 404 (427)
Q Consensus 325 ~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (427)
+|||.+.| +||+|||+++++ +.++..++++.++|.+.|+.|+..
T Consensus 227 ~GK~~~~d--~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~- 270 (291)
T 3npk_A 227 SGKPTNND--IHKNSFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNEK- 270 (291)
T ss_dssp -------------CCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCHH-
T ss_pred HCCccchh--cCcchHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhchh-
Confidence 99999877 999999999955 556778888999999999988642
Q ss_pred CcchHHHHHHHHHHHHHHHh
Q 014276 405 DEDVTKSRRALLDLTHRVIT 424 (427)
Q Consensus 405 ~~~~~~~r~~L~~l~~~v~~ 424 (427)
..+.|.+|+++.++
T Consensus 271 ------~~~~l~~la~~~~~ 284 (291)
T 3npk_A 271 ------LAQMIQNLIIQYLE 284 (291)
T ss_dssp ------HHHHHHHHHHHHC-
T ss_pred ------HHHHHHHHHHHHHh
Confidence 36789999988764
No 40
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=5.2e-57 Score=444.96 Aligned_cols=269 Identities=31% Similarity=0.420 Sum_probs=233.8
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAEV-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~~-p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 163 (427)
..|+-..+.++++.|++.|++.+.... +.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 10 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~---------------- 71 (293)
T 2j1p_A 10 HTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE---------------- 71 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH----------------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH----------------
Confidence 356667888899999999999887654 56999999999988 99999999999999987631
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-----CHHHHH-
Q 014276 164 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK-----NTEVVT- 235 (427)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~-----~~~v~~- 235 (427)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++ .|||+||||+++|++.++... +..+++
T Consensus 72 -~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~ 149 (293)
T 2j1p_A 72 -SLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGED-VAVLAGDALLSFAFEHLASATSSEVSPARVVRA 149 (293)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHHhccccCChHHHHHH
Confidence 25788999999999999999998 99999999999999999999 999999999999999998753 233444
Q ss_pred --HHHHHH--HHHHHHHHHhhcccCC--CCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014276 236 --LLATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAY 309 (427)
Q Consensus 236 --~ls~~~--~~l~~Gq~~dl~~~~~--~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAF 309 (427)
.+++++ ..++.||.+|+.+..+ ...++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||
T Consensus 150 ~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aF 229 (293)
T 2j1p_A 150 VGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLF 229 (293)
T ss_dssp HHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 555554 5799999999988654 3568899999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHH
Q 014276 310 QLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 389 (427)
Q Consensus 310 QI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~ 389 (427)
||+||++|+++++ |.|+|+++ +++++++.+++|
T Consensus 230 QI~DDiLD~~~~~--------------K~T~p~l~---------------------------------gle~a~~~a~~~ 262 (293)
T 2j1p_A 230 QVVDDILDVTKSS--------------KLTYPKLM---------------------------------GLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHC----------------CCCHHHHH---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCc--------------cccHHHHH---------------------------------HHHHHHHHHHHH
Confidence 9999999999875 88999998 568899999999
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014276 390 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427 (427)
Q Consensus 390 ~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~v~~R~k 427 (427)
.++|.+.|+.|| ++ .++.|.+|++++++|++
T Consensus 263 ~~~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 263 NTEARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 999999999998 44 57899999999999975
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=3.1e-57 Score=445.36 Aligned_cols=264 Identities=21% Similarity=0.264 Sum_probs=234.2
Q ss_pred hhHHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHH
Q 014276 90 SLVADELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168 (427)
Q Consensus 90 ~~i~~el~~v~~~l~~~~~~-~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (427)
+.+.+-...|++.|.+.+.. ..+.+.++++|++. | |||+||.|++++++++|++. +.+.
T Consensus 13 ~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~ 72 (289)
T 2azj_A 13 EFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDI-----------------KDSY 72 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCG-----------------GGGH
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCH-----------------HHHH
Confidence 44555566788888888865 46779999999998 9 99999999999999998642 1467
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Q 014276 169 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTG 247 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~l-a~~~~~~v~~~ls~~~~~l~~G 247 (427)
.+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.+ +..+ +++++.+++++..++.|
T Consensus 73 ~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~G 150 (289)
T 2azj_A 73 GGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNR-KVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVG 150 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 99999999999999999 8775 58999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCC
Q 014276 248 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 327 (427)
Q Consensus 248 q~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK 327 (427)
|++|+.+ +++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||
T Consensus 151 Q~~dl~~-------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K 218 (289)
T 2azj_A 151 ALRDMYD-------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KV 218 (289)
T ss_dssp HHHTTTT-------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CT
T ss_pred HHHHHhh-------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CC
Confidence 9999975 578999999999999999999999999 88888999999999999999999999999996 56
Q ss_pred CCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHhccCCC-CCC
Q 014276 328 GSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKT-RELAVKHANLAAAAIDSLPE-NND 405 (427)
Q Consensus 328 ~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a-~~~a~~~~~~A~~~L~~lp~-~~~ 405 (427)
+ |+++||.|+|+++ +... . +.+ +.++++|.++|.+.|+.+|+ ++
T Consensus 219 ~---dl~~gk~Tlp~l~--~~~g-~---------------------------~~a~~~~a~~~~~~A~~~L~~lp~~~~- 264 (289)
T 2azj_A 219 E---EIDGSAKQLFKYY--REGK-L---------------------------EEYVRSVYLEYKQKYDELISNIPFQSK- 264 (289)
T ss_dssp T---TCCTTGGGGHHHH--TTTC-H---------------------------HHHHHHHHHHHHHHHHHHHHTSCCCGG-
T ss_pred h---hhhcCcccHHHHH--HcCC-H---------------------------HHHHHHHHHHHHHHHHHHHHhCCCCcH-
Confidence 5 8999999999999 2211 0 111 45899999999999999998 66
Q ss_pred cchHHHHHHHHHHHHHHHhcc
Q 014276 406 EDVTKSRRALLDLTHRVITRN 426 (427)
Q Consensus 406 ~~~~~~r~~L~~l~~~v~~R~ 426 (427)
.++.|.++++++++|.
T Consensus 265 -----~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 265 -----YLSEIRSLPEFLANGL 280 (289)
T ss_dssp -----GHHHHHTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcc
Confidence 7899999999999985
No 42
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.8e-57 Score=461.32 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=236.3
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 014276 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 192 (427)
Q Consensus 113 ~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~ 192 (427)
.+.++.+|.+. | |||+||+|++++++++++.... ..+.+..+|++|||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 36788899884 8 9999999999999999874321 124678899999999999999999999999
Q ss_pred CCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHH
Q 014276 193 TRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMD 263 (427)
Q Consensus 193 ~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-------~~v~~~ls~~~~~l~~Gq~~dl~~~~--~~~~s~~ 263 (427)
+|||+||+|.+||++ .|||+||+|++.|+..+..+.+ .++++++++++..++.||.+|+.+.. +...+++
T Consensus 123 ~RRG~pt~h~~~G~~-~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e 201 (368)
T 2q58_A 123 FRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp EETTEECHHHHTHHH-HHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccccCcchh-hHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHH
Confidence 999999999999999 9999999999999999987653 36889999999999999999997653 4456789
Q ss_pred HHHHHHhhhhcch-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccH
Q 014276 264 YYMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 340 (427)
Q Consensus 264 ~Yl~ii~~KTasL-~~~a~~~gailag--~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~Tl 340 (427)
+|++|+.+|||.| |.+||.+|++++| ++++..+.++.||.++|+||||+||++||++ |||.|+||++||+||
T Consensus 202 ~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~ 276 (368)
T 2q58_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHH
Confidence 9999999999999 7999999999998 4666778899999999999999999999985 899999999999999
Q ss_pred HHHHHhhhC-cHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHH----HH
Q 014276 341 PILFAMEEF-PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRR----AL 415 (427)
Q Consensus 341 Pvl~Al~~~-~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~----~L 415 (427)
|+++|++.. ++.+..+.+.+.... +.+.+++...+..+.+.+.++++.+++.+.|+.+|+.. .++ .|
T Consensus 277 p~i~al~~~~~~~r~~L~~~~~~~~--~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll 348 (368)
T 2q58_A 277 PLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCCH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHH
Confidence 999999974 566777766554322 23344445556667778888899999999999999876 554 45
Q ss_pred HHHHHHHHhcc
Q 014276 416 LDLTHRVITRN 426 (427)
Q Consensus 416 ~~l~~~v~~R~ 426 (427)
..+++++++|+
T Consensus 349 ~kI~~~~~~rk 359 (368)
T 2q58_A 349 HQISELITNSR 359 (368)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHhh
Confidence 56666666664
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=9.2e-53 Score=411.27 Aligned_cols=223 Identities=29% Similarity=0.380 Sum_probs=195.8
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 014276 85 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (427)
Q Consensus 85 ~~~~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 163 (427)
+......+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.|++++++++|+... .
T Consensus 3 ~~~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~~--------------~ 66 (285)
T 4fp4_A 3 MYSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRSI--------------M 66 (285)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGGG--------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCCC--------------C
Confidence 44556789999999999999999987 889999999999988 999999999999999986210 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014276 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEH 243 (427)
Q Consensus 164 ~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~ 243 (427)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||++ .|||+||||+++|++.+++.++ ++++.+++++..
T Consensus 67 ~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~ 144 (285)
T 4fp4_A 67 DPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDG-RAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQR 144 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChH-HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 14688999999999999999999999999999999999999999 9999999999999999999864 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 014276 244 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 323 (427)
Q Consensus 244 l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~ 323 (427)
++.||.+|+.+..+. |+++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++
T Consensus 145 ~~~GQ~lDl~~~~~~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~ 214 (285)
T 4fp4_A 145 LSVGQALDLEGERDK---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP 214 (285)
T ss_dssp HHHHHHHHHTTCHHH---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH
T ss_pred HHHhHHHHHhccccc---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999886431 999999999999999999999999 8889999999999999999999999999875
Q ss_pred ccCCCCccccccC
Q 014276 324 SLGKGSLSDIRHG 336 (427)
Q Consensus 324 ~~GK~~~~Dl~eG 336 (427)
.||+.|+||+++
T Consensus 215 -~~k~~g~DI~e~ 226 (285)
T 4fp4_A 215 -ETKSIANEIGRY 226 (285)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -ccCccHHHHHHH
Confidence 688999999988
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=3.8e-48 Score=378.20 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHhhhcchH-HHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHH
Q 014276 92 VADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 170 (427)
Q Consensus 92 i~~el~~v~~~l~~~~~~~~p~-l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (427)
++.--..|++.|.+.+....|. +.++++|++..| |||+||.|++++++++|++.. .+..+
T Consensus 5 ~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~ 65 (274)
T 3kra_B 5 WAAIEADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMAA 65 (274)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHH
T ss_pred HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHH
Confidence 3444456888888888877775 999999999988 999999999999999987532 56889
Q ss_pred HHHHHHHHHHHHhccCCC-CCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCCH-------HHHHH---HHH
Q 014276 171 AEITEMIHVASLLHDDVL-DDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT-------EVVTL---LAT 239 (427)
Q Consensus 171 A~avEliH~AsLIHDDIi-D~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~~-------~v~~~---ls~ 239 (427)
|+++||||+||||||||+ |++++|||+||+|.+||++ .|||+||||+++||+.+++..++ .+++. +++
T Consensus 66 A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~ 144 (274)
T 3kra_B 66 AAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPN-VELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISR 144 (274)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHH-HHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHH
Confidence 999999999999999998 7777899999999999999 99999999999999999987653 34444 455
Q ss_pred HH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 014276 240 VV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 315 (427)
Q Consensus 240 ~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDl 315 (427)
++ ..++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||.
T Consensus 145 a~G~~~~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 145 AGGPEGMISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HTSTTTHHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54 6789999999998765 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=8.7e-47 Score=368.51 Aligned_cols=201 Identities=12% Similarity=0.144 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHhhhcchH-HHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHH
Q 014276 92 VADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 170 (427)
Q Consensus 92 i~~el~~v~~~l~~~~~~~~p~-l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (427)
+..--..|++.|.+.+....|. +.++++|++..| |||+||.|++++++++|++.. .+..+
T Consensus 10 ~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~ 70 (273)
T 3qkc_B 10 RATIESDIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMAA 70 (273)
T ss_dssp HHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHH
Confidence 3333445788888888776664 999999999988 999999999999999987532 56889
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH---HHHH
Q 014276 171 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN------TEVVTLL---ATVV 241 (427)
Q Consensus 171 A~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~------~~v~~~l---s~~~ 241 (427)
|+++||||+||||||||+|+|+ |||+||+|.+||++ .|||+||||+++||+.+++..+ .++++.+ ++++
T Consensus 71 A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~ 148 (273)
T 3qkc_B 71 AAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPN-IELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVM 148 (273)
T ss_dssp HHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHH-HHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHH-HHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 99999999999999 9999999999999999987653 3445544 4444
Q ss_pred --HHHHHHHHHhhcccCCCCCCHHHHHH-HHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014276 242 --EHLVTGETMQMTTSSDQRCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 316 (427)
Q Consensus 242 --~~l~~Gq~~dl~~~~~~~~s~~~Yl~-ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDll 316 (427)
..++.||.+|+.+.. ..+. +|++ |+++|||+||++||++||+++|++++..+.+++||.++|+||||+||++
T Consensus 149 g~~~~~~GQ~lDl~~~~--~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 149 GSEGIVEGQYHELGLNQ--LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp TTTTHHHHHHHHTTCCS--SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHhcCC--CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999998843 3454 5665 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.40 E-value=0.21 Score=48.34 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 014276 241 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 320 (427)
Q Consensus 241 ~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g 320 (427)
+..+..|..+|+... ...+++++..-+++-.|+...+.+. +++..+++ ...++.++|+|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc--
Confidence 467889999998764 2357777766555544444444333 34444443 345788999999999988776
Q ss_pred cccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014276 321 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 400 (427)
Q Consensus 321 ~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 400 (427)
+.|+..|++-+|.=..-+.+-...++.... .++ .+..+ +..-...++.|.++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~-~~~-~~~~~---------~~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIRARR-ATD-GVRRC---------IALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHHTTC-CCH-HHHHH---------HHHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHhcCC-CCH-HHHHH---------HHHHHHHHHHHHHHHHHHHHhC
Confidence 467888999998765443322222332221 222 22222 2334466778888888888888
Q ss_pred CCC
Q 014276 401 PEN 403 (427)
Q Consensus 401 p~~ 403 (427)
|..
T Consensus 235 p~~ 237 (294)
T 4hd1_A 235 PPR 237 (294)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.62 E-value=0.32 Score=46.92 Aligned_cols=135 Identities=13% Similarity=0.013 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 014276 240 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 319 (427)
Q Consensus 240 ~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~ 319 (427)
.+..+..|..+|+... .-.|++++..-+++-.|+...+.+.+ ++..+. +.....+.++|.|+|+.|=+.|+
T Consensus 109 ~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv- 179 (293)
T 3acx_A 109 SFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV- 179 (293)
T ss_dssp HHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566778888888653 23477887776666555555555443 232331 23557899999999999977776
Q ss_pred ccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014276 320 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 399 (427)
Q Consensus 320 g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 399 (427)
+.|+..|++-+|.=..-+.+-...++.... .++ .+.. .+..-...++.|.++|...+..
T Consensus 180 ----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~~-~~~~---------~~~~l~~~A~~~~~~a~~~~~~ 238 (293)
T 3acx_A 180 ----------GEDFENERIYFSKQRLKQYEVDIAEVYQNG-VNN-HYID---------LWEYYAAIAEKDFRDVMDQIKV 238 (293)
T ss_dssp ----------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHTGGG
T ss_pred ----------HHHHhCCcEEeCHHHHHHcCCCHHHhcccC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHhHHh
Confidence 467888999999854433322222333322 122 2222 2344557788899999999999
Q ss_pred CCCCC
Q 014276 400 LPENN 404 (427)
Q Consensus 400 lp~~~ 404 (427)
+|...
T Consensus 239 lp~~~ 243 (293)
T 3acx_A 239 FSIEA 243 (293)
T ss_dssp SCTTH
T ss_pred CCHHH
Confidence 98753
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=94.05 E-value=0.54 Score=46.55 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhh
Q 014276 233 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 312 (427)
Q Consensus 233 v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~ 312 (427)
+..++.+.+..+..|-.+++.. ...+++++..-+++-.|+...+.+.+-..-...++. .......+.++|.|||+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 4455667777888888888752 345888887777766666666666554443222332 334567899999999999
Q ss_pred hhcccccccccccCCCCccccccCcccHHHHHHhhhCcHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014276 313 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 392 (427)
Q Consensus 313 DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~Al~~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 392 (427)
|=+.|+ +.|+..|++-+|.=..-+.+-...+++ .+..-+.+.+ .+..-...++.|.++
T Consensus 188 NilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFA-----KPENIDLAVQ------CLNELITNALHHIPD 245 (343)
T ss_dssp HHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGG-----SGGGHHHHHH------HHHHHHHHHHTTHHH
T ss_pred HHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHh-----cccCCHHHHH------HHHHHHHHHHHHHHH
Confidence 977776 567788888888754332211111111 1111112222 234445667777788
Q ss_pred HHHHhccCCCC
Q 014276 393 AAAAIDSLPEN 403 (427)
Q Consensus 393 A~~~L~~lp~~ 403 (427)
|...+..+|+.
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888777664
No 49
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=79.60 E-value=29 Score=35.12 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=62.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC--CCHHHHH--H
Q 014276 223 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--L 297 (427)
Q Consensus 223 ~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag--~~~~~~~--~ 297 (427)
..+.....+.....+.+.+..++.+-+.+..+.. ...+++++|+++ +..||.....++ .....| .++++.+ .
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~ 322 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI--TDTVGGYELPADLHARPD 322 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG--HHHHHTCCCCHHHHTSHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH--HHHHcCCCCCHHHHhCch
Confidence 3444444566778888888899999888877643 335799999996 445654322222 112223 2344332 4
Q ss_pred HHHHHHHHHHHHhhhhhccccccc
Q 014276 298 AFDYGKNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 298 l~~~G~~lGiAFQI~DDllD~~g~ 321 (427)
+.++-+..+...-+.||+..|.-+
T Consensus 323 ~~~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 323 MQRVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH
Confidence 566778888899999999999654
No 50
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=79.58 E-value=3.2 Score=35.60 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 014276 209 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 254 (427)
Q Consensus 209 ~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~ 254 (427)
.-||+|||+=+.-+.+|+..+....+..+++++..+.+.-..-+.-
T Consensus 71 riVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~~ 116 (147)
T 3aqb_A 71 SFVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRATI 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4459999999999999999999999999999999998887766544
No 51
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=76.49 E-value=61 Score=31.84 Aligned_cols=95 Identities=6% Similarity=-0.081 Sum_probs=61.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHH--HHHHHHHH
Q 014276 227 SLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA--ILAFDYGK 303 (427)
Q Consensus 227 ~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~--~~l~~~G~ 303 (427)
....+.....+.+.+..++.+-..+..+.. ...+++++|+++-..-+|..+..++..-+.--..+++.. ..+.++-+
T Consensus 172 ~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~ 251 (382)
T 3kb9_A 172 AFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAAL 251 (382)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHH
Confidence 334566788889999999999988877643 335799999998555444433222211111112344432 24566778
Q ss_pred HHHHHHhhhhhccccccc
Q 014276 304 NLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 304 ~lGiAFQI~DDllD~~g~ 321 (427)
..+...-+.||+..|.-+
T Consensus 252 ~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 252 LSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999998654
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=68.75 E-value=1.2e+02 Score=31.76 Aligned_cols=91 Identities=11% Similarity=0.022 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC--CCHHHHHHH---HHHH
Q 014276 229 KNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILA---FDYG 302 (427)
Q Consensus 229 ~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag--~~~~~~~~l---~~~G 302 (427)
+...++..+-+++..++.+-+.+..|.. ...+|+++|++...--+|.-+..... -...| .+.+..+.+ .++-
T Consensus 363 ~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~--~~~mg~~lt~e~~e~~~~~p~i~ 440 (554)
T 3g4d_A 363 GRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITS--FVGMGDIVTPETFKWAASDPKII 440 (554)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHH--HHTSCTTSCHHHHHHHHTCCHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHH--HHhcCCCCCHHHHHhccccHHHH
Confidence 3345788888999999999998888753 34679999999765555443322111 11123 356655543 3677
Q ss_pred HHHHHHHhhhhhccccccc
Q 014276 303 KNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 303 ~~lGiAFQI~DDllD~~g~ 321 (427)
+..+...-+.||+..+-.+
T Consensus 441 ~~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 441 QASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcccchhhhh
Confidence 8889999999999998644
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=63.42 E-value=81 Score=33.00 Aligned_cols=88 Identities=9% Similarity=0.045 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 014276 233 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 307 (427)
Q Consensus 233 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~~~~~~~l---~~~G~~lGi 307 (427)
++..+.+++..++.+-+.+..|.. ...+|+++|++...--+|.-+...... ..++. .+.+..+.+ -++-+..++
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~-~~mg~~lt~e~~e~~~~~p~i~~~~~~ 443 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAY-FAVVQNIKKEEIENLQKYHDIISRPSH 443 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHH-HHHCSSCCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHH-HhcCCCCCHHHHHhcccchHHHHHHHH
Confidence 567778888999999888887743 346899999997666555432222111 11122 356555433 366778889
Q ss_pred HHhhhhhccccccc
Q 014276 308 AYQLIDDVLDFTGT 321 (427)
Q Consensus 308 AFQI~DDllD~~g~ 321 (427)
..-+.||+..+..+
T Consensus 444 i~RL~NDi~S~~~E 457 (555)
T 3n0f_A 444 IFRLCNDLASASAE 457 (555)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhh
Confidence 99999999998644
No 54
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=60.75 E-value=1.1e+02 Score=28.83 Aligned_cols=99 Identities=9% Similarity=-0.097 Sum_probs=60.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCC-CCC-CHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHH--HH
Q 014276 223 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LA 298 (427)
Q Consensus 223 ~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~-s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~--~l 298 (427)
..+.....+.....+.+.+..++.+-..+..+... ..+ ++++|+++-..-.|..+..++..-++--..+++..+ .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~ 204 (337)
T 1ps1_A 125 RRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVM 204 (337)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHH
Confidence 33444445777788999999999999888776543 356 899999865544444333222211111122344322 45
Q ss_pred HHHHHHHHHHHhhhhhccccccc
Q 014276 299 FDYGKNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 299 ~~~G~~lGiAFQI~DDllD~~g~ 321 (427)
.++-+..+...-+.||+..|.-+
T Consensus 205 ~~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 205 SAMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 56778889999999999998654
No 55
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=60.42 E-value=1.2e+02 Score=31.72 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchHHHHHHHHHHHc-C-CCHHHHHHH---HHH
Q 014276 228 LKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDY 301 (427)
Q Consensus 228 ~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~gaila-g-~~~~~~~~l---~~~ 301 (427)
.+...++..+.+++..++.+-+.+..|.. ...+|+++|++...--+|..+-.+.. .++ . .+.+..+.+ -++
T Consensus 358 ~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i 434 (550)
T 3m00_A 358 AGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKI 434 (550)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHH
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHH
Confidence 33345778888899999999998888753 33679999999766555543222211 233 2 455554432 367
Q ss_pred HHHHHHHHhhhhhccccccc
Q 014276 302 GKNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 302 G~~lGiAFQI~DDllD~~g~ 321 (427)
-+..+...-+.||+..+..+
T Consensus 435 ~~~~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 435 LEASVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHhhhheeeccchhHHHH
Confidence 78889999999999998644
No 56
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=60.41 E-value=1.1e+02 Score=28.39 Aligned_cols=65 Identities=6% Similarity=0.057 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 014276 258 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 322 (427)
Q Consensus 258 ~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~ 322 (427)
..+++++|+++-..-+|..+...+..-++--..+++..+.+..+-+..+...-+.||+..|--+.
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35799999996655555443332222222123467777778889999999999999999996543
No 57
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=50.50 E-value=1.6e+02 Score=27.48 Aligned_cols=64 Identities=5% Similarity=0.054 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHhhhhcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 014276 258 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 258 ~~~s~~~Yl~ii~~KTasL~~~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~ 321 (427)
..+++++|+++-..-+|..+..++..-++--..+++..+...++-+..+...-+.||+..|.-+
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3579999998766666644333222222212346777677888899999999999999999654
No 58
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=48.75 E-value=1.7e+02 Score=27.78 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 286 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 286 ilag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
...|.+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+=..|
T Consensus 38 ~~~~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 38 HWLKVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIY 84 (301)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhcc
Confidence 33455555444556666777788899999976 246788888876555
No 59
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=48.36 E-value=1.5e+02 Score=28.73 Aligned_cols=54 Identities=30% Similarity=0.193 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 279 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 279 ~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
.-|.+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|+|.|++|+-..|
T Consensus 59 ~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 59 MLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD------------ESRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhc
Confidence 344455555555544444556666778889999999977 245677888865554
No 60
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=47.23 E-value=1.9e+02 Score=30.02 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Q 014276 232 EVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAIL---AFDYGKNLG 306 (427)
Q Consensus 232 ~v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~~~~~~~---l~~~G~~lG 306 (427)
.++..+.+++..++.+-+.+..|... ..+|+++|++.-..-+|...-... .-..+++ .+.+..+. .-++-+..+
T Consensus 355 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~-~~~~~g~~~t~e~~e~~~~~p~i~~~~~ 433 (543)
T 2ong_A 355 NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTH-IFFRVTDSFTKETVDSLYKYHDLVRWSS 433 (543)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHH-HHHHHSSCCCHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHH-HHHHcCCCCCHHHHHHhcccHHHHHHHH
Confidence 35677788888888888888776543 357999999876544443322221 1112232 34554433 235667778
Q ss_pred HHHhhhhhccccccc
Q 014276 307 LAYQLIDDVLDFTGT 321 (427)
Q Consensus 307 iAFQI~DDllD~~g~ 321 (427)
+..-+.||+..+-.+
T Consensus 434 ~i~RL~NDi~S~~~E 448 (543)
T 2ong_A 434 FVLRLADDLGTSVEE 448 (543)
T ss_dssp HHHHHHHHHHSSHHH
T ss_pred HHHHHhcccchhhhc
Confidence 888899999888644
No 61
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=44.36 E-value=1.1e+02 Score=29.62 Aligned_cols=53 Identities=26% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHHH
Q 014276 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 345 (427)
Q Consensus 281 ~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~A 345 (427)
|.+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|+|.|++|+-..|-
T Consensus 55 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 55 VLLVARLYGAVTPATLHAAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFN 107 (334)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcC
Confidence 3334444454444444455566778889999999977 2567888888777664
No 62
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=41.55 E-value=1.3e+02 Score=28.66 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAGQ---TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag~---~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.|. +.+....+...-+-+=.+.-|.||+.| .+|+|.|++|+-..|
T Consensus 53 vll~~~~~g~~~~~~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 53 LLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMY 107 (285)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHH
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhc
Confidence 3344444444 334344555566778889999999966 256788888876665
No 63
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=40.88 E-value=96 Score=30.34 Aligned_cols=54 Identities=19% Similarity=0.020 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 279 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 279 ~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
.-|.+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|+|.|++|+-..|
T Consensus 60 ~l~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 60 ALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD------------GDEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC------------CCCCCCCCccHHHhc
Confidence 334455555566655444555666777888999999977 256788888876655
No 64
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=37.12 E-value=1.5e+02 Score=30.83 Aligned_cols=88 Identities=17% Similarity=0.010 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CCHHH-HHH---HHHHHHHHH
Q 014276 233 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEV-AIL---AFDYGKNLG 306 (427)
Q Consensus 233 v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~~~~-~~~---l~~~G~~lG 306 (427)
++..+.+++..++.+-+.+..|... ..+|+++|++.-..-+|.-.-. +..-..++. .+.+. .+. .-++-+..+
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~-~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII-SPTYFTFANASHDTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH-HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH-HHHHHHcCCCCcHHHHHhhhcccHHHHHHHH
Confidence 5567777888888888877766432 3579999999754444432221 111111122 23443 332 346777888
Q ss_pred HHHhhhhhccccccc
Q 014276 307 LAYQLIDDVLDFTGT 321 (427)
Q Consensus 307 iAFQI~DDllD~~g~ 321 (427)
+..-+.||+..+-.+
T Consensus 441 ~i~RL~NDi~S~~~E 455 (549)
T 1n1b_A 441 IILRLPDDLGTSYFE 455 (549)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHhcccchhhhh
Confidence 999999999888644
No 65
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=36.93 E-value=1.6e+02 Score=32.31 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcchH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 014276 233 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 303 (427)
Q Consensus 233 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~--~~a~~~gailag-~~~~~~~~l~-----~~G~ 303 (427)
++..+-+++..++.+-+.+..|.. ...+|+++|++...--+|.-. ...+..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 566777888889998888877643 336799999997655444422 2222222 222 3556555544 6678
Q ss_pred HHHHHHhhhhhccccccc
Q 014276 304 NLGLAYQLIDDVLDFTGT 321 (427)
Q Consensus 304 ~lGiAFQI~DDllD~~g~ 321 (427)
..+...-+.||+..|..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 888899999999998644
No 66
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=36.30 E-value=2.5e+02 Score=26.41 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc--ccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDl--lD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.|.+++..-.+...-+-+=.+.-|.||+ .| .+|+|.|++|+=..|
T Consensus 54 ~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 54 VLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTY 107 (284)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhc
Confidence 33344444556554444555666777788899999 88 256788888877666
No 67
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=34.52 E-value=3.4e+02 Score=26.59 Aligned_cols=152 Identities=13% Similarity=0.007 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCccccc--Cchh-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 014276 176 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GNKV-LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 252 (427)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~--G~~~-~AVl~GD~Lla~a~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl 252 (427)
...++..+.||+.|++... ....+..+ |..- ..++. .++..+.-+.+.-.+.....+.+.+.+-..|...+.
T Consensus 91 d~~~~~F~lDD~~d~~~~~--l~~~~~~ll~G~~~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPYPT--MVNYFDDLQAGREQAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp HHHHHHHHHTTCCSCSHHH--HTTHHHHHHHTCCCSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccCcHHH--HHHHHHHHhcCCCCCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788899999875311 11111111 1110 11111 133333444555567777788888888888888775
Q ss_pred cccCCCCCCHHHHHHHHhhhhcchHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 014276 253 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 325 (427)
Q Consensus 253 ~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~gailag-~~------~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~ 325 (427)
.+ ....++.++|....+.+||.. +. + .+.++.. .- ++....+..+...+ =..|||+-|.-+....
T Consensus 166 ~n-~~~~p~~~~Y~~~rR~~sG~~-E~-~-~~~~~P~~~~~e~~~~~~~~~~i~am~~~i----~~~NDIlSf~KE~~~~ 237 (374)
T 1yyq_A 166 YN-FGGFPGSHDYPQFLRRMNGLG-HC-V-GASLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFYKEFDDE 237 (374)
T ss_dssp TC-CCCCTTCTTHHHHHHHHHHCH-HH-H-HHTTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCS
T ss_pred hc-cCCCCCHHHHHHHHHhhccHH-HH-H-HHhhccccccchhhcchhHHHHHHHHHHHH----Hhhhhhhccchhhhcc
Confidence 54 344557888999889999873 11 1 1111211 11 22344444444433 4568888886543211
Q ss_pred CCCCccccccCcccHHHHHHhhhC
Q 014276 326 GKGSLSDIRHGIITAPILFAMEEF 349 (427)
Q Consensus 326 GK~~~~Dl~eGk~TlPvl~Al~~~ 349 (427)
| | ..+++.+++..+.
T Consensus 238 G-----d----~~NlV~vl~~~~g 252 (374)
T 1yyq_A 238 R-----D----QISLVKNYVVSDE 252 (374)
T ss_dssp S-----C----CCCHHHHHHHHHT
T ss_pred C-----C----ccchhhhehhcCC
Confidence 1 2 3467777766553
No 68
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=33.37 E-value=34 Score=32.91 Aligned_cols=81 Identities=26% Similarity=0.256 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC-HHH
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-TEV 233 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~-~~v 233 (427)
...+...-+.|=.|.=|.|||+| .++.+.|++|+=..+|.. .|--...-+..+|...|..++. .+.
T Consensus 205 ~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~-~a~~~a~~~~~~A~~~L~~l~~~~~~ 283 (304)
T 3lsn_A 205 LKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLA-AAKEYALELRDQALHALRPFDAAAEP 283 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHH-HHHHHHHHHHHHHHHHTTTSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 34566677788899999999987 568899999999999999 9999999999999999988763 223
Q ss_pred HHHHH-HHHHHHHHHH
Q 014276 234 VTLLA-TVVEHLVTGE 248 (427)
Q Consensus 234 ~~~ls-~~~~~l~~Gq 248 (427)
+..++ -.+.+..+|.
T Consensus 284 L~~l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 284 LRELARYIVERRSEGH 299 (304)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHhccccc
Confidence 33333 2344444443
No 69
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=33.19 E-value=1.7e+02 Score=31.88 Aligned_cols=88 Identities=7% Similarity=0.027 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhcch-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Q 014276 232 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNL 305 (427)
Q Consensus 232 ~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL-~~~a~~~gailag-~~~~~~~~l---~~~G~~l 305 (427)
.++..+.+++..++.+-+.+..|.. ...+|+++|++...--+|.- +...+..+ ++. .+.+..+.. .++-+..
T Consensus 566 ~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~ 643 (764)
T 3p5p_A 566 DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELV 643 (764)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHH
Confidence 3567778888889998888877643 33679999999766555543 22222221 222 344444443 4577888
Q ss_pred HHHHhhhhhccccccc
Q 014276 306 GLAYQLIDDVLDFTGT 321 (427)
Q Consensus 306 GiAFQI~DDllD~~g~ 321 (427)
+...-+.||+..|..+
T Consensus 644 ~~I~RL~NDi~S~k~E 659 (764)
T 3p5p_A 644 SLSWRLTNDTKTYQAE 659 (764)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchHHH
Confidence 8899999999998644
No 70
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=32.07 E-value=57 Score=31.66 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
...+...-+.|=.|.=|.|||+| .++.+.|++|+=..+|.. .|--...-+..+|...|..++
T Consensus 233 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~-~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 233 IKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLE-ECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHH-HHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 34566667778889999999976 246677888888888888 888888888888888888876
No 71
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=30.14 E-value=1.4e+02 Score=28.50 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 169 ~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
.+...-+.|=.|.=|.||++| .++.+.|++|+=..+|.. .|--...-++..|...|..++
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~-~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLA-GAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSS-HHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 455666778889999999988 246778888988889999 898888899999998888775
No 72
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=29.01 E-value=2e+02 Score=27.30 Aligned_cols=50 Identities=28% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 283 AIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 283 ~gailag~-~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
+++.+.|. +.+..-.+...-+-+=.+.=|.||+.| .+|+|.|++|+-..|
T Consensus 50 ~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 50 LSFKNRGVEIGEDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhc
Confidence 33333344 333333455555667778889999977 256788888876655
No 73
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=27.90 E-value=2.6e+02 Score=26.66 Aligned_cols=52 Identities=23% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.|.+.+..-.+...-+-+=.+.-|.||+.| .+|+|.|++|+=..|
T Consensus 52 ~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 52 VLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAF 103 (325)
T ss_dssp HHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCccccc
Confidence 4444444454433334455556667778899999977 245777887765544
No 74
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=27.58 E-value=74 Score=30.76 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
...+...-+.|=.|.=|.|||+| .++.+.|++|+=..+|.. .|--...-+..+|...|..++
T Consensus 204 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle-~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 204 LAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLD-GAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHH-HHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 34566677788889999999977 346777888888888888 888888888888888888775
No 75
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=26.12 E-value=2.3e+02 Score=27.67 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.|.+.+....+...-+-|=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 53 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 53 TLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAF 104 (358)
T ss_dssp HHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhc
Confidence 3334433333433333455556778889999999976 256788888876665
No 76
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=26.05 E-value=2.2e+02 Score=27.90 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag-~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.| .+.+....+...-+-|=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 82 ~ll~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 82 ALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 344455555 44443444555667777889999999772 45677777765555
No 77
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=25.74 E-value=2.4e+02 Score=27.22 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 282 KAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 282 ~~gailag-~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
.+++.+++ .+.+....+...-+-+=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 64 l~~~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 64 YLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTY 115 (334)
T ss_dssp HHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHc
Confidence 33444444 3565555566666778889999999977 256788888876655
No 78
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=24.87 E-value=54 Score=31.35 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
...+...-+.+=.|.=|.|||+| .++.+.|++|+=..+|.. .|.-...-+..+|...|..++
T Consensus 200 ~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~-~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 200 KEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKD-GAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 34566667778889999999987 456777888877777777 777777777888888887764
No 79
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=24.37 E-value=2.1e+02 Score=27.76 Aligned_cols=39 Identities=28% Similarity=0.096 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccc
Q 014276 279 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 317 (427)
Q Consensus 279 ~a~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD 317 (427)
.-|.+++.+.|.+.+....+...-+-+=.+.-|.||+.|
T Consensus 71 ~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 71 LMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 334455555555544444555666778889999999977
No 80
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=24.02 E-value=4.4e+02 Score=25.23 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=31.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 285 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 285 ailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
+...|.+.+....+...-+-+=.|.=|.||+.| .+|+|.|++|+-..|
T Consensus 52 ~~~~~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 52 NRVMNLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIF 99 (340)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhcc
Confidence 344455555444455566667778889999976 246777888765544
No 81
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=22.90 E-value=67 Score=31.27 Aligned_cols=62 Identities=29% Similarity=0.281 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
...+...-+.+=.|.=|.|||+| .++.+.|++|+=..+|.. .|.-..+-+..+|...|..++
T Consensus 244 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le-~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEA-WAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHH-HHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 34566667778889999999977 245667777777777877 777777777778877776664
No 82
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=22.71 E-value=1.1e+02 Score=29.70 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCC
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 230 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~~ 230 (427)
...+...-+.|=.|.=|.|||+| .++.+.|++|+=..+|.. .|--...-+..+|...|..++.
T Consensus 211 ~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle-~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 211 FDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLS-GAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHH-HHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCc
Confidence 34566677788889999999976 246788888988889999 8888888889999888888764
No 83
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=22.51 E-value=3.1e+02 Score=25.85 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.|.+++..-.+...-+-+=.+.=|.||+.| .+|+|.|++|+=..|
T Consensus 57 ~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~ 108 (289)
T 2azj_A 57 NMFFTVALGGDIKDSYGGALAIEILHSASLALCDIVD------------LDATRRGDKAAWVVY 108 (289)
T ss_dssp HHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCBSSSSBCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCCCCCCCccHHHhc
Confidence 3444445455543333445555667778889999966 256788888876655
No 84
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=21.51 E-value=2.6e+02 Score=26.84 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=32.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCccccccCcccHHHHH
Q 014276 282 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 282 ~~gailag~~~~~~~~l~~~G~~lGiAFQI~DDllD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
.+++.+.|.+.+....+...-+-+=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 55 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 55 LTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIW 105 (342)
T ss_dssp HHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCcccccc
Confidence 333444454444333455556667778899999977 246777888866555
No 85
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=20.55 E-value=88 Score=30.11 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC
Q 014276 167 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229 (427)
Q Consensus 167 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~~AVl~GD~Lla~a~~~la~~~ 229 (427)
...+...-+.|=.|.=|.|||+| .++.+.|++|+=..+|.. .|--...-+..+|...|..++
T Consensus 212 ~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~-~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 212 KSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQ-QLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHH-HHHHHHHHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 34566677788889999999976 346788899999999999 998888889999988888775
No 86
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.02 E-value=5.1e+02 Score=24.58 Aligned_cols=52 Identities=21% Similarity=0.074 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCHHHH--HHHHHHHHHHHHHHhhhhhc--ccccccccccCCCCccccccCcccHHHHH
Q 014276 281 CKAIALLAGQTAEVA--ILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 344 (427)
Q Consensus 281 ~~~gailag~~~~~~--~~l~~~G~~lGiAFQI~DDl--lD~~g~~~~~GK~~~~Dl~eGk~TlPvl~ 344 (427)
|.+++.+.|.+.+.. ..+...-+-+=.+.-|.||+ .| .+|+|.|++|+=..|
T Consensus 56 ~l~~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD------------~s~~RRG~pt~h~~~ 111 (309)
T 3pde_A 56 TVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMD------------NDALRRGEPTNHVKF 111 (309)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHH
T ss_pred HHHHHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCcchhhhc
Confidence 334444444443333 44555567777889999999 87 256788888876665
Done!