RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014276
(427 letters)
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 449 bits (1158), Expect = e-158
Identities = 275/346 (79%), Positives = 315/346 (91%), Gaps = 1/346 (0%)
Query: 82 SQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMAT 141
+E+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMAT
Sbjct: 4 VEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMAT 63
Query: 142 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLN 201
AL+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN
Sbjct: 64 ALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLN 123
Query: 202 FVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCS 261
VMGNK+ +VLAGDFLLSRAC ALA+LKNTEVV LLAT VEHLVTGETM++T+S++QR S
Sbjct: 124 VVMGNKM-SVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYS 182
Query: 262 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 321
MDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGT
Sbjct: 183 MDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT 242
Query: 322 SASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQK 381
SASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ+
Sbjct: 243 SASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQR 302
Query: 382 TRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427
RELA++HANLAAAAI SLPE ++EDV +SRRAL+DLTHRVITRNK
Sbjct: 303 ARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, PR structure
initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus
brevis} PDB: 3n3d_A
Length = 334
Score = 291 bits (746), Expect = 3e-96
Identities = 87/344 (25%), Positives = 149/344 (43%), Gaps = 28/344 (8%)
Query: 86 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 145
F V +L+ L L V + + K G GK RP L +T N
Sbjct: 15 WRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFSTFGNA 72
Query: 146 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 205
P L A E++HV +L+HDDV+DD+ TRRG+ ++ G
Sbjct: 73 ATPAQLQA----------------GAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYG 116
Query: 206 NKVLAVLAGDFLLSRA-CVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDY 264
+ A+ AGDF+ + L S + ++ + ++ GE QM + + ++D
Sbjct: 117 QRN-AIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDA 175
Query: 265 YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 324
Y+ + KTA L + SC A LAG V D G +G AYQ++DD+LD+ G
Sbjct: 176 YLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKR 235
Query: 325 LGKGSLSDIRHGIITAPILFAMEEFP--QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKT 382
K L D+R G+ + P+L ++ P + + ++ ++ + + G+
Sbjct: 236 TQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAA 295
Query: 383 RELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
++LA + + A I LP ++++L LT ++ R+
Sbjct: 296 KQLAQDYTDRALTLIQQLPVG------SAQQSLEQLTRLLLRRD 333
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Length = 325
Score = 282 bits (725), Expect = 3e-93
Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 32/347 (9%)
Query: 86 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 145
L + + + + KRL + ++ + AA + G GKR RP +LL +
Sbjct: 4 LSYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDT 61
Query: 146 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 205
+ + + A E++H+ASL+HDD +D++D RRG S++
Sbjct: 62 QKDDLIR-----------------TAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFD 104
Query: 206 NKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 265
A+ G FLL+RA +A++ N++ + + + + GE QM + S Y
Sbjct: 105 KDT-AIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAY 163
Query: 266 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 325
+++ KTA LI SC AL + + +G +G++YQ+IDD+LD+T A+L
Sbjct: 164 LRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATL 223
Query: 326 GKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSS-NVDIALEYLGKSRGI 379
GK SDIR+G IT P++ A+ ++ +L VV+ S V + K GI
Sbjct: 224 GKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGI 283
Query: 380 QKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ L+ K+ + A + L ++ + L ++ +++ R
Sbjct: 284 EPAELLSRKYGDKAKYHLSQLQDS------NIKDYLEEIHEKMLKRV 324
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein
structure initiative, isoprene biosynthesis,
transferase; 2.30A {Bacteroides thetaiotaomicron}
Length = 334
Score = 279 bits (715), Expect = 1e-91
Identities = 90/344 (26%), Positives = 154/344 (44%), Gaps = 32/344 (9%)
Query: 89 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 148
+ + EL + + L S + K GK RP ++LL+A P
Sbjct: 10 KTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVTP 67
Query: 149 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKV 208
LH A E++H ASL+HDDV+D++ RRG S+N + NKV
Sbjct: 68 ATLH-----------------AAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKV 110
Query: 209 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 268
+VLAGD+LL+ + V N E++ L++++ + L GE +Q++ S+ S + Y
Sbjct: 111 -SVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDV 169
Query: 269 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 328
KTA+L + +A AL E A G+ +G+ +Q+ DD+ D+ S +GK
Sbjct: 170 IRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFD-SKKIGKP 228
Query: 329 SLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 383
+ +D+ G +T P L+A+ Q+ V++G + +E+ + GI+
Sbjct: 229 TGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYAC 288
Query: 384 ELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427
++ A + +LP++ AL V+ R K
Sbjct: 289 RTIEQYKKKAFDLLAALPDS------NICLALRTYLDYVVAREK 326
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 278 bits (714), Expect = 2e-91
Identities = 98/366 (26%), Positives = 160/366 (43%), Gaps = 32/366 (8%)
Query: 66 RHQIHHQSSSVIEDTDSQEQLDP-FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKM 124
H H ++ +D L +++ + + + + ++V + + AE+
Sbjct: 4 HHHHHSLDAAAATLPRKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAA 63
Query: 125 GVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLH 184
G GKR RP + + A +A E IH A+LLH
Sbjct: 64 G--GKRLRPLMTVAAARLAGADNDHFQK-----------------LAAAVEFIHTATLLH 104
Query: 185 DDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 244
DDV+D + RRG + + + G +VL GDFL +RA + + + + +LA +
Sbjct: 105 DDVVDGSQLRRGKVAAHLIWGGAQ-SVLVGDFLFARAFELMVETNSMKALEILARASRVI 163
Query: 245 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 304
GE +Q+ S D S Y++ KTA L + + +A A+ AG + DYG N
Sbjct: 164 AEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLN 223
Query: 305 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQG 359
LGLA+QL DD LD+ G + +LGK + D R G T P+L A+ E + +
Sbjct: 224 LGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRR 283
Query: 360 FEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 419
+ ++ A E + S + T +LA +A+ A AA+ P N R AL +L
Sbjct: 284 EQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAN------DWREALEELA 337
Query: 420 HRVITR 425
++R
Sbjct: 338 DFAVSR 343
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, protein structure
initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
PDB: 3q2q_A*
Length = 360
Score = 269 bits (690), Expect = 2e-87
Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 31/341 (9%)
Query: 89 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 148
+ + D + + + L + + + L + + G GKRFRP LL + +
Sbjct: 37 TARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS 94
Query: 149 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKV 208
E + A + E+ H+A+L HDDV+D+A RRG+ S N N V
Sbjct: 95 ENVIKA----------------AVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSV 138
Query: 209 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 268
A+LAGD LL+ A ++ L + V A LVTG+ + D +++Y
Sbjct: 139 -AILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDTD-PIEHYTNV 195
Query: 269 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 328
KT LI+++ A+ AG E ++G +G+ +Q++DD++D + GK
Sbjct: 196 IREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKT 255
Query: 329 SLSDIRHGIITAPILFAM----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 384
+D+R G+ T P+L+A+ +LR ++ ED V+ LE L +S G Q +
Sbjct: 256 PGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALD 315
Query: 385 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 425
++ ++A A +D LP++ + AL +L + R
Sbjct: 316 EVYRYMDIANAELDRLPDS------TVKEALRNLATFTVKR 350
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 266 bits (681), Expect = 2e-86
Identities = 97/354 (27%), Positives = 174/354 (49%), Gaps = 34/354 (9%)
Query: 80 TDSQEQLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLL 138
T ++L +A++++ + +R + +E P++ + + G GKR RP + L
Sbjct: 8 TKPHDRL--AQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLA 63
Query: 139 MATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIG 198
A + P +H +A E IH A+LLHDDV+D++ RRG
Sbjct: 64 AARLVGYGGPFHVH-----------------LAATVEFIHTATLLHDDVVDESRQRRGRP 106
Query: 199 SLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ 258
+ N + NK +VL GD+L +R+ + N V+ +LA + GE +Q+T + +
Sbjct: 107 TANLLWDNKS-SVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNL 165
Query: 259 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 318
+ D Y++ KTA+L S + + ++ G + FDYG LG+A+Q++DD+LD+
Sbjct: 166 ATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDY 225
Query: 319 TGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYL 373
G SA +GK + D R +T P++ A+ E + V+E+G + +++ A+ +
Sbjct: 226 GGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALM 285
Query: 374 GKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427
K ++ TR A+ + A A+ LP++ R+ L DL V+ R +
Sbjct: 286 TKHGTLEATRLAAIGWTDTARKALAKLPDH------PLRQMLDDLADYVVERVR 333
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 246 bits (631), Expect = 3e-79
Identities = 84/342 (24%), Positives = 137/342 (40%), Gaps = 42/342 (12%)
Query: 91 LVADELSILAKRLRS-MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPE 149
+ +L + ++ S + E + R + + LL + + +
Sbjct: 1 MQEKQLKAIQNKIASWIKEIESGFIDELFSKIGPSK--MLRSKLMLALLNEKTDAILLDK 58
Query: 150 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVL 209
L+ + I EMI ASLLHDDV+D A RR + S+N + GN
Sbjct: 59 ALN-----------------LCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFN- 100
Query: 210 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 269
AV+ GD S+A L+ + + L+ V L GE + Y +
Sbjct: 101 AVMLGDVFYSKAFFELSKMGE-LIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRIL 159
Query: 270 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 329
KTA I S K++A+L + A++ D+G N G+A+Q+IDD+LD T + +LGK +
Sbjct: 160 EDKTAHFIEASLKSMAILLNKDAKIY---ADFGLNFGMAFQIIDDLLDITQDAKTLGKPN 216
Query: 330 LSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 384
SD + G T P L + L + +Q ++ E + I++T +
Sbjct: 217 FSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD--SHEIIEWTKEKFKQYGIIEETLK 274
Query: 385 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
A ++ A AI L L VI+R
Sbjct: 275 TAQVYSKKALEAIKGEN----------NLILEKLAQDVISRT 306
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 242 bits (621), Expect = 5e-78
Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 32/317 (10%)
Query: 86 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 145
+ + + EL + +R+ ++ P+ + GK R + +L V
Sbjct: 3 KNKLNQNSYELEKVKERIEQILSQFFPEQI---MKDLPLY--GKMLRVRLSILSFKNRGV 57
Query: 146 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 205
+ E E++H+ASLLHDDV+D A RRG ++NF+ G
Sbjct: 58 EIGEDAIS----------------SLAALELVHLASLLHDDVIDGARFRRGKETINFMYG 101
Query: 206 NKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 265
+K AV AGD +L A + + N ++ V+ + E ++ + + + Y
Sbjct: 102 DKA-AVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEY 159
Query: 266 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 325
++ K+ +L + + ALL G+ E ++ G +G YQ+ DD++DF G +
Sbjct: 160 LRIVEGKSGALFGLALQLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGM-EKI 215
Query: 326 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTREL 385
GK D+++G+ + P++ AME+FP+ R + E + + ++ + +++ E
Sbjct: 216 GKDGFLDLKNGVASFPLVTAMEKFPEARQMFENR-----DWSGLMSFMREKGILKECEET 270
Query: 386 AVKHANLAAAAIDSLPE 402
L +
Sbjct: 271 LKVLVKNVIIENSWLRD 287
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural GENO structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 233 bits (596), Expect = 3e-74
Identities = 65/330 (19%), Positives = 118/330 (35%), Gaps = 35/330 (10%)
Query: 103 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 162
+ L +Y ++ GK+ R + L V PE
Sbjct: 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKV--PEDKLQ--------- 48
Query: 163 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRAC 222
I E+TEM+H ASLL DD+ D++ RRG + + G + + +++
Sbjct: 49 ------IIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPS-VINSANYVYFLGL 101
Query: 223 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC-SMDYYMQKTYYKTASLISNSC 281
+ +L + + V L + L G+ + + + C + + Y KT L +
Sbjct: 102 EKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAV 161
Query: 282 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 341
+ L + ++ LGL +Q+ DD + S K D+ G + P
Sbjct: 162 GLMQLFSDYKEDLK----PLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFP 217
Query: 342 ILFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398
+ A+ P Q++ ++ Q E+ + YL + TR + A ID
Sbjct: 218 TIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQID 277
Query: 399 SLPENNDEDVTKSRRALLD-LTHRVITRNK 427
+ N AL+ L+ N+
Sbjct: 278 ARGGN------PELVALVKHLSKMFKEENE 301
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus
horikoshii}
Length = 342
Score = 228 bits (584), Expect = 6e-72
Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 48/360 (13%)
Query: 89 FSLVADELSILAKRLRS-MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 147
F+ + ++ ++ +++ + + L AA ++ G GKR RP V+L A+
Sbjct: 8 FARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP 65
Query: 148 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 207
++ A E+IH SL+HDD++D +TRRG +++ + G
Sbjct: 66 LRAIY-----------------PAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVN 108
Query: 208 VLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSM 262
+ A+LAGD L S+A A+A K V+ ++ L G+ + ++
Sbjct: 109 M-AILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTI 167
Query: 263 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 322
+ YM+ KT +L S K ++ E +G+N+G+A+Q+ DDVLD
Sbjct: 168 EEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADE 227
Query: 323 ASLGKGSLSDIRHGIITAPILFAME-----EFPQLRTVVEQGFEDSS-----------NV 366
LGK SDIR G T + E + + + + D +V
Sbjct: 228 KKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDV 287
Query: 367 DIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
A++ L K I E+A A A+ LP++ K+R L L ++ R
Sbjct: 288 MEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKS------KARMDLELLAKFIVERE 341
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 224 bits (572), Expect = 1e-70
Identities = 74/333 (22%), Positives = 127/333 (38%), Gaps = 60/333 (18%)
Query: 94 DELSILAKRLRS-MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLH 152
+E + ++ + + E P L E+ G GKR RP +LLL++ + L+
Sbjct: 9 EEYRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYSRSLN 66
Query: 153 DGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVL 212
A EM+H ASL+HDD+LD RR + S G A+L
Sbjct: 67 -----------------AALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSG-ALL 108
Query: 213 AGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYK 272
GD+L++++ ++ +V+ + GE + + D+ + Y + Y K
Sbjct: 109 CGDYLIAKSIAFISPYGE-KVIQDFGKAGMDMAEGEVLDLKLE-DESFGENDYFKCIYKK 166
Query: 273 TASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 332
TASL + S A G E+A +G LG AYQ++DD+L+F GK +
Sbjct: 167 TASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----E 220
Query: 333 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 392
+ T P ++ K ++K+ + H
Sbjct: 221 SKFTSETLPHIYMKST-------------------------SKEEALKKSIDCVKLHVAA 255
Query: 393 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 425
A +++ E +R L +T +
Sbjct: 256 AKETLETFREC------PARDKLFQITDYITVD 282
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 221 bits (565), Expect = 7e-69
Identities = 72/361 (19%), Positives = 135/361 (37%), Gaps = 41/361 (11%)
Query: 81 DSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMA 140
+ P ++ + LA + ++ + + G GK RP + +L A
Sbjct: 11 RGRTLATP--VLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSA 66
Query: 141 TALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL 200
E + A E++H SLLHDD++D + RR ++
Sbjct: 67 EVTG--------AAPEVGVPG---------AVAVELVHNFSLLHDDLMDGDEQRRHRDTV 109
Query: 201 NFVMGNKVLAVLAGDFLLSRAC---VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD 257
V G A+L GD L + A + L +++ L L+ G+ ++
Sbjct: 110 WKVHGPAQ-AILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHR 168
Query: 258 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 317
R S++ ++ KT +L++ + A+L G A YG +LGLA+Q +DD+L
Sbjct: 169 DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLG 228
Query: 318 FTGTSASLGKGSLSDIRHGIITAPILFAME-----------EFPQLRTVVEQGFEDSSNV 366
G + GK + SD+R + P++ A+ +
Sbjct: 229 IWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEF 288
Query: 367 DIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ ++ G + T + A + +A A+D++ + R L V+ R
Sbjct: 289 AARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDR-----VRDRFTALADFVVVRK 343
Query: 427 K 427
+
Sbjct: 344 R 344
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 220 bits (563), Expect = 1e-68
Identities = 78/357 (21%), Positives = 141/357 (39%), Gaps = 49/357 (13%)
Query: 90 SLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 148
L + + K L + + + A Y K G GKR RP + L A A++ +
Sbjct: 8 RLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR 65
Query: 149 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKV 208
L A I E+IH SL++DD++D D RRG+ ++ G+
Sbjct: 66 PALP-----------------AAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNA 108
Query: 209 LAVLAGDFLLSRACVALASLKNTEVVT-LLATVVEHLVTGETMQMTTSSDQRC------- 260
A+L G + A+ + +A V++ + GE + + + R
Sbjct: 109 -AILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQA 167
Query: 261 -----SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 315
++D Y++ KT +LI+ + K L +A A+++G G+A+Q+IDDV
Sbjct: 168 RWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDV 227
Query: 316 LDFTGTSASLGKGSLSDIRHGIITAPILFAM------EEFPQLRTVVEQGFEDSSNVDIA 369
LD G GK DI+ ++ E +L ++ + + ++V A
Sbjct: 228 LDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREA 287
Query: 370 LEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ L ++ LA ++ A + +P N L +L ++ R
Sbjct: 288 VALLDSVGAREEALRLAARYREEAERHLAKIPNN---------GTLKELLDFIVARE 335
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 199 bits (508), Expect = 8e-61
Identities = 75/350 (21%), Positives = 131/350 (37%), Gaps = 40/350 (11%)
Query: 91 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 150
L +RL + + P + + + G GK R + + A A
Sbjct: 4 APEAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHG------ 55
Query: 151 LHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLA 210
+E L A E+ L+HDD+ D ++ RRG +L+ + + A
Sbjct: 56 --APLEAGLE---------AATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPL-A 103
Query: 211 VLAGDFLLSRACVALA-----SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC--SMD 263
+ AGD + + LA L EV+ VV G+ + + + +
Sbjct: 104 LNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPE 163
Query: 264 YYMQKTYYKTASLI-SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 322
Y + +K A + ALLAG+T A + G LG A+Q++DDVL+ G
Sbjct: 164 DYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAY--EEGGLRLGTAFQIVDDVLNLEGGE 221
Query: 323 ASLGKGSLSDIRHGIITAPILFAME-----EFPQLRTVVEQGFEDSSNVDI--ALEYLGK 375
A GK D+ G T +L +E E + ++ E ++ LE L
Sbjct: 222 A-YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLA 280
Query: 376 SRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 425
SR + + A + A +++ ++ ++ L L ++ R
Sbjct: 281 SRALAWAKAEAKRLQAEGLALLEAAFQDLPG--KEALDHLRGLLAALVER 328
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A
Length = 289
Score = 197 bits (502), Expect = 2e-60
Identities = 59/305 (19%), Positives = 102/305 (33%), Gaps = 40/305 (13%)
Query: 89 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 148
+ + + + + + + + GKRFR T+ + AL +
Sbjct: 12 IEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILKD--GKRFRGTLNMFFTVALGGDIK 69
Query: 149 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKV 208
+ A E++H ASL D++D TRRG + V GN+
Sbjct: 70 DSYG-----------------GALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRK 112
Query: 209 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 268
+ ++L+ A + + + + + + G M +SD Y++
Sbjct: 113 -VIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRDMYDNSD-------YIRT 164
Query: 269 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA----S 324
KT SL S A + + D GK LG+ YQ+IDD +D+
Sbjct: 165 IELKTGSLFKLSTVLSAYASKHYNTKQQML-DVGKYLGIIYQVIDDFVDYKTKKVEEIDG 223
Query: 325 LGKGSLSDIRHGIITAPILFAMEEFPQ-----LRTVVEQGF---EDSSNVDIALEYLGKS 376
K R G + + E+ Q + + Q E S + L K
Sbjct: 224 SAKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGLLKE 283
Query: 377 RGIQK 381
I K
Sbjct: 284 ANIDK 288
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 190 bits (485), Expect = 3e-57
Identities = 56/354 (15%), Positives = 129/354 (36%), Gaps = 39/354 (11%)
Query: 90 SLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPE 149
+ + ++ L ++ + GK FR +++ + +N+ +
Sbjct: 4 NKMEAKIDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPKDQ 61
Query: 150 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVL 209
+++I E++H +SLL DD+ D+A RRG + + + G
Sbjct: 62 LAI-----------------VSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPS- 103
Query: 210 AVLAGDFLLSRA---CVALASLKN--TEVVTLLATVVEHLVTGETMQMT---TSSDQRCS 261
+ +++ RA L + + ++T+ + +L G+ + + + +
Sbjct: 104 TINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPT 163
Query: 262 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 321
+ Y+ KT L + + + L+ + L + LG+ YQ+ DD L+
Sbjct: 164 QEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLV-PFINLLGIIYQIRDDYLNLKDF 222
Query: 322 SASLGKGSLSDIRHGIITAPILFAM---------EEFPQLRTVVEQGFEDSSNVDIALEY 372
S KG DI G ++ PI+ A+ E+ ++ ++ D ++
Sbjct: 223 QMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQI 282
Query: 373 LGKSRG-IQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 425
L + T+ + N+ ++ + + + L D +I
Sbjct: 283 LEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDH 336
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum
calidifontis}
Length = 285
Score = 187 bits (477), Expect = 8e-57
Identities = 66/304 (21%), Positives = 114/304 (37%), Gaps = 37/304 (12%)
Query: 89 FSLVADELSILAKRLRSMV-VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 147
V L + RL + E L A ++ + GK RP +LL +++
Sbjct: 7 PPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSID--- 61
Query: 148 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 207
+ D E A I E++HV SLL DDV+D D RRGI + + G+
Sbjct: 62 ----RRSIMDPRILEA-------AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDG 110
Query: 208 VLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 267
A++A D+L++ + +L +VVT LA V + L G+ + + +
Sbjct: 111 R-AIVASDWLIAESIKMAVNL-GADVVTYLADVAQRLSVGQALDLEGE---------RDK 159
Query: 268 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 327
+KTA LI + ++ G+ + G LG+ YQ DD D K
Sbjct: 160 AAEFKTAPLIEAALVMPLVILGRRELIETAK-KLGTKLGILYQYSDDYSDENVERPE-TK 217
Query: 328 GSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKT 382
++I G I + ++ ++ + E + V + +
Sbjct: 218 SIANEI--GRYLLKIKEHVGDAIAPFERLIKYLIGKALEGTLTVSRTIAENLYFQSHHHH 275
Query: 383 RELA 386
+
Sbjct: 276 HHWS 279
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 183 bits (466), Expect = 5e-54
Identities = 75/369 (20%), Positives = 135/369 (36%), Gaps = 49/369 (13%)
Query: 90 SLVADELSILAKRLR---SMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVR 146
+V D L+ + + A V + F G GKR RP A +
Sbjct: 23 EVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLA--AQ 78
Query: 147 VPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGN 206
+ + +E L A E I +L+HDD++D +DTRRG +++ +
Sbjct: 79 GHKNSSEKLESVLD---------AAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEA 129
Query: 207 KV---------------LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVT 246
+++LAGD L A L + ++
Sbjct: 130 DHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIG 189
Query: 247 GETMQMTTSSDQRCSMDYYMQKTYYKTAS-LISNSCKAIALLAGQTAEVAILAFDYGKNL 305
G+ + + S S++ +KTA+ I+ A +AG + ++ YG ++
Sbjct: 190 GQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDI 249
Query: 306 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME-----EFPQLRTVVEQGF 360
G+A+QL DD+L G A GK + DIR G T + A++ +
Sbjct: 250 GIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVG 309
Query: 361 EDSSNVDI--ALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 418
+ +S DI E++ + ++ + + A +D + ++ R L L
Sbjct: 310 KVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRAL 364
Query: 419 THRVITRNK 427
R R +
Sbjct: 365 AIRSTERRE 373
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 171 bits (436), Expect = 1e-49
Identities = 66/377 (17%), Positives = 125/377 (33%), Gaps = 41/377 (10%)
Query: 68 QIHHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVE 127
+ + S V+E + +E + F + +L + V + + G
Sbjct: 15 ALRNLSPVVVER-EREEFVGFFPQIVRDL--TEDGIGHPEVGDAVARLKEVLQYNAPG-- 69
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GK R ++ L+ + + + ALA + E+ ASL+ DD+
Sbjct: 70 GKCNRGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAASLVADDI 119
Query: 188 LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV 241
+D + TRRG G L + FLL + + ++ L
Sbjct: 120 MDQSLTRRGQLCWYKKEGVG-LDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTA 178
Query: 242 EHLVTGETMQMTTSSDQRC-----SMDYYMQKTYYKTASL--ISNSCKAIALLAGQTAEV 294
G+ + + T+ + S + Y YKTA A+ ++ + E
Sbjct: 179 YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEE 238
Query: 295 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK-GSLSDIRHGIITAPILFAMEEF-PQL 352
A +G +Q+ DD LD G A G G +DI+ + ++ ++ P+
Sbjct: 239 HENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVG--TDIQDNKCSWLVVQCLQRVTPEQ 296
Query: 353 RTVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 410
R ++E G ++ V E ++ I+
Sbjct: 297 RQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------ 350
Query: 411 SRRALLDLTHRVITRNK 427
+ L L ++ R K
Sbjct: 351 PKEIFLGLAQKIYKRQK 367
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase,
structural genomics, structural GEN consortium, SGC,
transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F*
1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A*
1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F*
2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Length = 374
Score = 156 bits (395), Expect = 7e-44
Identities = 67/389 (17%), Positives = 130/389 (33%), Gaps = 39/389 (10%)
Query: 55 YSWSLPALHGIRHQIHHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKL 114
+S L+ H Q+S V + Q+ + FS + L + + +
Sbjct: 9 HSSGRENLYFQGHMNGDQNSDVYAQ-EKQDFVQHFSQIVRVL--TEDEMGHPEIGDAIAR 65
Query: 115 ASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174
+ +G GK R +++ L V + D ++ A +
Sbjct: 66 LKEVLEYNAIG--GKYNRGLTVVVAFREL-VEPRKQDADSLQRAWT---------VGWCV 113
Query: 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS-----LK 229
E++ L+ DD++D + TRRG G + A+ + L + L
Sbjct: 114 ELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPY 173
Query: 230 NTEVVTLLATVVEHLVTGETMQMTTSSD-----QRCSMDYYMQKTYYKTASLISNSCKAI 284
++ L G+T+ + T+ R + Y YK+A A
Sbjct: 174 YLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAA 233
Query: 285 A-LLAGQTAEVAI-LAFDYGKNLGLAYQLIDDVLDFTGTSASLGK-GSLSDIRHGIITAP 341
A +AG E A +G +Q+ DD LD G + GK G +DI+ +
Sbjct: 234 AMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIG--TDIQDNKCSWL 291
Query: 342 ILFAMEEF-PQLRTVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398
++ ++ P+ ++++ G +++ V + + + A I+
Sbjct: 292 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 351
Query: 399 SLPENNDEDVTKSRRALLDLTHRVITRNK 427
L L ++ R K
Sbjct: 352 QYAAPL------PPAVFLGLARKIYKRRK 374
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 154 bits (390), Expect = 3e-43
Identities = 58/382 (15%), Positives = 121/382 (31%), Gaps = 45/382 (11%)
Query: 64 GIRHQIHHQSSSVIEDTDSQEQLDPFSLVA--DELSILAKRLRSMVVAEVPKLASAAEYF 121
G H HH SS E+ Q + D + D+ ++ + + EY+
Sbjct: 2 GSSHHHHHHSSG-RENLYFQGEYDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYY 60
Query: 122 FKM----GVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMI 177
+GK R +L+L+++ + + + + + E I
Sbjct: 61 LNCIDYNVKKGKHIRGKILVLISSLSS----AYSNIKRDSIYL---------LGWVVEAI 107
Query: 178 HVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN------- 230
L+ DD++D RRG V G A+ FL + + L +
Sbjct: 108 QALILIADDIMDSGKFRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDIV 166
Query: 231 TEVVTLLATVVEHLVTGETMQMTTSSDQRC--SMDYYMQKTYYKTASLISNSCKAIALLA 288
++ + + V G+ + ++ + + Y KT+ L
Sbjct: 167 MKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTL 226
Query: 289 GQ---TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 345
+ ++ L LG YQ+ +DV D+ + DI +T P+ +
Sbjct: 227 SEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKS 281
Query: 346 MEEFP--QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 403
E + E ++SS V L + E + + + ++
Sbjct: 282 FEIADEEMKLKISENYGKNSSLVKDCYNLLKI---NEHYLEYQRNALDYLIKLVKDITDD 338
Query: 404 NDEDVTKSRRALLDLTHRVITR 425
+ + V + ++ +
Sbjct: 339 SLQKVFIH--LIHQISELITNS 358
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 147 bits (372), Expect = 2e-40
Identities = 72/414 (17%), Positives = 127/414 (30%), Gaps = 73/414 (17%)
Query: 64 GIRHQIHHQSSSVIE--------------DTDSQEQLDPFSLVADELS--ILAKRLRSMV 107
G H HH SS D+ + + D + L +
Sbjct: 1 GSSHHHHHHSSGRENLYFQGMKETNSEEADSGLAFFRNMYDKYRDAFLSHLNEYSLEEEI 60
Query: 108 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167
+ K + +G GK R +++L+ + R + E A
Sbjct: 61 KEHISKYYKLLFDYNCLG--GKNNRGILVILIYEYVKNR--DINSSEWEKAA-------- 108
Query: 168 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALAS 227
C+A E++ A L+ DD++D + RR + + D LL +
Sbjct: 109 -CLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVE-TKNAVNDVLLLYNSIYKLI 166
Query: 228 LK-------NTEVVTLLATVVEHLVTGETMQMTTSSDQRC-------------------- 260
+V+ + G+ + SD+
Sbjct: 167 EIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVID 226
Query: 261 ----SMDYYMQKTYYKTASLISNSCKAI-ALLAGQTAEVAIL--AFDYGKNLGLAYQLID 313
+ Y +KTA LLAG + I D +G +Q+ D
Sbjct: 227 INMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHD 286
Query: 314 DVLDFTGTSASLGK-GSLSDIRHGIITAPILFAMEEF-PQLRTVVEQ--GFEDSSNVDIA 369
D LD G S GK G SDI++ +T P++ E + + + G + + V +
Sbjct: 287 DYLDIFGDSTKTGKVG--SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVI 344
Query: 370 LEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 423
+ + + +AI+ L E V K LL++ +
Sbjct: 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKY---LLEILFTGV 395
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex,
isoprene biosynthesis, transferase; HET: 721; 1.94A
{Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A*
3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Length = 390
Score = 146 bits (370), Expect = 5e-40
Identities = 60/390 (15%), Positives = 121/390 (31%), Gaps = 38/390 (9%)
Query: 70 HHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMG---- 125
HH SS + S P + + L + + + Y KM
Sbjct: 7 HHHHSSGLVPRGSHMASMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC 66
Query: 126 VEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 185
+ GK R ++ +A +L P + + A + + E + L+ D
Sbjct: 67 LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVED 126
Query: 186 DVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN-------TEVVTLLA 238
D++D++ TRRG + D LL ++ + ++ +++
Sbjct: 127 DIMDNSVTRRGKPCWYRHPDVT-VQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFN 185
Query: 239 TVVEHLVTGETMQMTTSSDQRC----------------SMDYYMQKTYYKTASLISNSCK 282
V G+ +T+ D ++ Y + YKTA
Sbjct: 186 RVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPL 245
Query: 283 AI-ALLAGQTAEVAI-LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 340
+ +++ V + + + +G +Q+ DDV+D LGK +DI+ +
Sbjct: 246 VMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSW 304
Query: 341 PILFAMEEF-PQLRTVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 397
+ + + + G DS V ++ A I
Sbjct: 305 LAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELI 364
Query: 398 DSLPENNDEDVTKSRRALLDLTHRVITRNK 427
+ L + ++ L + R K
Sbjct: 365 EKLRLCSPG----FAASVETLWGKTYKRQK 390
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase,
bisphosphonate, dimethyl ALLY pyrophosphate sulfate,
FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma
cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A*
3icn_A* 3icz_A* 3id0_A*
Length = 362
Score = 143 bits (361), Expect = 5e-39
Identities = 50/376 (13%), Positives = 107/376 (28%), Gaps = 43/376 (11%)
Query: 80 TDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM 139
+ L + V L + + + +G GK FR + ++
Sbjct: 2 ASMERFLSVYDEVQAFLLDQLQSKYEID-PNRARYLRIMMDTTCLG--GKYFRG--MTVV 56
Query: 140 ATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGS 199
A + ++ + + I E + L+ DD++D + RRG
Sbjct: 57 NVAEGFLAVTQHDEATKERILHDACVGGWMI----EFLQAHYLVEDDIMDGSVMRRGKPC 112
Query: 200 LNFVMGNKVLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE--HLVTGETM------- 250
G D ++ ++ + + L ++ V T
Sbjct: 113 WYRFPGV-TTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDV 171
Query: 251 --------------QMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI-ALLAGQTAEVA 295
Q T+ + Y + YKT + ++ A V
Sbjct: 172 TSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231
Query: 296 I-LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLR 353
+ L +G +Q+ DDV+D LGK +DI + + + +
Sbjct: 232 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQV 290
Query: 354 TVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 411
+ G +D + V + ++ + + I+ L +
Sbjct: 291 AEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSP----TF 346
Query: 412 RRALLDLTHRVITRNK 427
++ + + R K
Sbjct: 347 AESVAVVWEKTHKRKK 362
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 117 bits (295), Expect = 6e-30
Identities = 84/384 (21%), Positives = 137/384 (35%), Gaps = 88/384 (22%)
Query: 67 HQIHHQSSSV---IEDTDSQEQLDPFSLVADELSILAKR-------LRSMVVAEV---PK 113
H HH SS V E+ Q + + D + L++ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMKKRKTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKV 61
Query: 114 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173
L + Y +G GKR RP +L++ + + L A
Sbjct: 62 LYDSMAYSINVG--GKRIRP--ILMLLSY------YIYKSDYKKILTP---------AMA 102
Query: 174 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT 231
EMIH SL+HDD+ +D+ D RRG + + V G + AVLAGD LL+ A L
Sbjct: 103 IEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAI-AVLAGDALLNEAMKILVDYSLE 161
Query: 232 ------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNSC 281
+ ++A + ++ G+ + + + S+ YM KT LI S
Sbjct: 162 EGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHL--KKTGELIKASI 219
Query: 282 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 341
+ A+LA + +G LGLA+Q+ DD+LD G + LGK D
Sbjct: 220 MSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYI 279
Query: 342 ILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 401
+F G+++ ++ V + S+
Sbjct: 280 TIF---------------------------------GLEECKKKCVNITEECIEILSSIK 306
Query: 402 ENNDEDVTKSRRALLDLTHRVITR 425
N + L LT +++ R
Sbjct: 307 GNTE--------PLKVLTMKLLER 322
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 116 bits (294), Expect = 1e-29
Identities = 75/341 (21%), Positives = 123/341 (36%), Gaps = 77/341 (22%)
Query: 99 LAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 158
L+ R+ + L A + G GKR RP L++ + + E
Sbjct: 58 LSGEARADEITRPQNLLEAMRHGVLNG--GKRLRP--FLVIESVALLGGDA------EAG 107
Query: 159 LATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDF 216
L + E +H SL+HDD+ +DD D RRG +++ A+LAGD
Sbjct: 108 LH---------VGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEAT-AILAGDS 157
Query: 217 LLSRACVALASLKNT-------EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDY--Y 265
LL+ A +AS N +V LA + G+ + + + + D
Sbjct: 158 LLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLA-AEKKAPDEDGIIT 216
Query: 266 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 325
+Q KT +L+ +C+A A++AG +G+ +GL++QL DD+LD T +A++
Sbjct: 217 LQA--MKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATM 274
Query: 326 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTREL 385
GK + D G T L G RE
Sbjct: 275 GKATGKDAARGKGTLVALR---------------------------------GEAWAREK 301
Query: 386 AVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ A+ + E L+ + R
Sbjct: 302 LQEQVAEASELLAPYGEKAA--------ILIAAARFIAERK 334
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 116 bits (292), Expect = 1e-29
Identities = 64/329 (19%), Positives = 120/329 (36%), Gaps = 70/329 (21%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
P L A G GKRFRP L +A + + + + IA
Sbjct: 34 PYLEKAFFEMVLNG--GKRFRP--KLFLAVLCALVGQKDYSNQQTEYFK---------IA 80
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALAS 227
E +H SL+HDD+ +D+A RR +L+ + AVL GD L + + ++ A
Sbjct: 81 LSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYD-ETTAVLIGDALNTYSFELLSNAL 139
Query: 228 LKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNS 280
L++ +V L+ + ++ ++ G+ + + +++ ++ + +KTA LIS S
Sbjct: 140 LESHIIVELIKILSANGGIKGMILGQALDCY-FENTPLNLEQLTFLHE--HKTAKLISAS 196
Query: 281 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 339
+ +G E +G +GL +Q++DD++D T GK + D +
Sbjct: 197 LIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDS--AKNS 254
Query: 340 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 399
L G+++ A +D+
Sbjct: 255 FVNLL---------------------------------GLERANNYAQTLKTEVLNDLDA 281
Query: 400 LPENNDEDVTKSRRALLD-LTHRVITRNK 427
L + L+ L + +
Sbjct: 282 LKPAYPLL-----QENLNALLNTLFKGEG 305
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 115 bits (289), Expect = 3e-29
Identities = 80/328 (24%), Positives = 127/328 (38%), Gaps = 77/328 (23%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L +A Y G GKR RP +L A+A V A+ A
Sbjct: 31 NQLHNAMRYSLFNG--GKRIRP--MLTYASAQLVGDIS------SLTDAS---------A 71
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
E IH SL+HDD+ +D+ + RRG + + A+LAGD L + A L++
Sbjct: 72 AALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEAT-AILAGDALQTFAFELLSNPT 130
Query: 230 NT------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISN 279
+ +++ L ++TG+ + ++ S ++ S+ M +KT +LI
Sbjct: 131 SAQPELAIKLIQELVVASGRNGMITGQMIDLS-SENKNISLAELEQMHV--HKTGALIKA 187
Query: 280 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 338
S + AL GQ + D Y +GLA+Q+ DD++D T + +LGK SD
Sbjct: 188 SVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKA 247
Query: 339 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 398
T P L G+ + L V+ A A I
Sbjct: 248 TYPKLL---------------------------------GLDGAKALVVRLHEQAIAQIS 274
Query: 399 SLPENNDEDVTKSRRALLDLTHRVITRN 426
+ + L DL + +I RN
Sbjct: 275 EFGDKSQ--------PLTDLANYIIDRN 294
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 114 bits (288), Expect = 4e-29
Identities = 70/330 (21%), Positives = 119/330 (36%), Gaps = 78/330 (23%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
P++ SA Y G GKR RP +L+ + V + IA
Sbjct: 36 PQIRSALHYALFSG--GKRIRP--ILVYLAGDLIDVDQ------GVLDI---------IA 76
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
E+ H SL+HDD+ +D+ D RRG S + A+L GD + + A L
Sbjct: 77 AALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEAT-AILVGDGMQALAIEVLLMRL 135
Query: 230 NT--------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLI 277
+ + +L + +V+G+++ ++ + + + + KT LI
Sbjct: 136 SPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHL--LKTGKLI 193
Query: 278 SNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 336
+ + + +E A YGK++GL +Q+ DD LD + LGKG SD +
Sbjct: 194 LACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQ 253
Query: 337 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396
T LF Q+ E H +A +
Sbjct: 254 KTTFATLF---------------------------------NKQQLEEEIAVHYQIAMDS 280
Query: 397 IDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ AL++LT ++ R+
Sbjct: 281 LRLFGSKAA--------ALIELTKQLQNRS 302
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 114 bits (287), Expect = 8e-29
Identities = 78/330 (23%), Positives = 113/330 (34%), Gaps = 79/330 (23%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L A Y G GKR RP LL AT + V + A
Sbjct: 36 ERLHQAMRYSVLGG--GKRMRP--LLTYATGQTIGVAA------DLLDGP---------A 76
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
E IHV SL+HDD+ +DD D RRG + + A+LAGD L + A LA
Sbjct: 77 CAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEAT-AILAGDGLQALAFHVLAQDP 135
Query: 230 NT--------EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLI 277
+ ++ LA +V G+ + + S ++ + M KT +LI
Sbjct: 136 SIAVPAENRIAMIETLAKASGPAGMVGGQAIDLA-SVGKKLDLPGLENMHI--RKTGALI 192
Query: 278 SNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 336
S + L D Y K +GLA+Q+ DD+LD + +LGK D H
Sbjct: 193 RASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHN 252
Query: 337 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396
P L G+ +E A + A +
Sbjct: 253 KPNYPALL---------------------------------GLSGAKEKAEEMHEAALES 279
Query: 397 IDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ D L +L +I R
Sbjct: 280 LAGFGPEAD--------LLRELARFIIQRQ 301
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 113 bits (285), Expect = 9e-29
Identities = 83/330 (25%), Positives = 124/330 (37%), Gaps = 79/330 (23%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L A Y G GKR RP LL A + E A A
Sbjct: 30 ARLYEAMRYSVMNG--GKRVRP--LLAYAACEALGGKP------EQANGA---------A 70
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
E+IH SL+HDD+ +DD D RRG + + A+LAGD L S A AL
Sbjct: 71 CAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEAC-AILAGDGLQSLAFSALLDPA 129
Query: 230 NTEV--------VTLLATVV--EHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLI 277
++ VT LA +V G+ + + S + YM + +KT +LI
Sbjct: 130 LSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLG-SVGLKLDQQALEYMHR--HKTGALI 186
Query: 278 SNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 336
S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK +DI
Sbjct: 187 EASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARD 246
Query: 337 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396
T P L G+ +E A++ + A A
Sbjct: 247 KPTYPALL---------------------------------GLAAAKEYALELRDQALHA 273
Query: 397 IDSLPENNDEDVTKSRRALLDLTHRVITRN 426
+ + L +L ++ R
Sbjct: 274 LRPFDAAAE--------PLRELARYIVERR 295
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 113 bits (284), Expect = 1e-28
Identities = 84/331 (25%), Positives = 135/331 (40%), Gaps = 76/331 (22%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+ +Y +G GKR RP L+ AT V A A
Sbjct: 30 TPVVETMQYGALLG--GKRLRP--FLVYATGHMFGVST------NTLDAP---------A 70
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
E IH SL+HDD+ +DD D RRG+ + + G A+LAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEAN-AILAGDALQTLAFSILSDAD 129
Query: 230 NTEV--------VTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLI 277
EV ++ LA+ + + G+ + + + + +D + + +KT +LI
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLD-AEGKHVPLDALERIHR--HKTGALI 186
Query: 278 SNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 336
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 187 RAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLG 246
Query: 337 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396
T P L G+++ R+ A + A +
Sbjct: 247 KSTYPALL---------------------------------GLEQARKKARDLIDDARQS 273
Query: 397 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 427
+ L E + + AL L +I RNK
Sbjct: 274 LKQLAEQSLDT-----SALEALADYIIQRNK 299
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 113 bits (284), Expect = 1e-28
Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 74/327 (22%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L + Y G GKR RP +LL+ T ++ L AL
Sbjct: 28 TQLEESMLYSLNAG--GKRIRP--VLLLLTLDSLNTEYELGMKSAIAL------------ 71
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
EMIH SL+HDD+ +D+ D RRG + + V G A+LAGD LL++A ++S
Sbjct: 72 ---EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWT-AILAGDALLTKAFELISSDD 127
Query: 230 NT------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLISN 279
+V+ L+ +V G+ + M S Q ++ + K KT +L++
Sbjct: 128 RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHK--TKTGALLTF 184
Query: 280 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 339
+ + A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + T
Sbjct: 185 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKST 244
Query: 340 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 399
L G + H + A +
Sbjct: 245 YVSLL---------------------------------GKDGAEDKLTYHRDAAVDELTQ 271
Query: 400 LPENNDEDVTKSRRALLDLTHRVITRN 426
+ E + LL++ +R+
Sbjct: 272 IDEQFNTK------HLLEIVDLFYSRD 292
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 112 bits (283), Expect = 2e-28
Identities = 72/330 (21%), Positives = 122/330 (36%), Gaps = 79/330 (23%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
L A Y +G GKR RP L+ T + D A
Sbjct: 36 LPLIEAMRYGLLLG--GKRARP--YLVYITGQMLGCEL------SDLDTP---------A 76
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
E IH SL+HDD+ +DD + RRG + + A+L GD L + A LA
Sbjct: 77 SAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEAT-AILTGDALQTLAFTILAEGD 135
Query: 230 NT--------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLI 277
+ ++ LA + + G+ + + + ++ S++ + + KT +L+
Sbjct: 136 LSAAGETQRVAMLQALAEASGAQGMCLGQALDLA-AENRLISLEELETIHR--NKTGALM 192
Query: 278 SNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 336
+ + AL AG+ + D Y + +GLA+Q+ DD+LD + +LGK SD
Sbjct: 193 RCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELN 252
Query: 337 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 396
T P L G++ ++ A A A
Sbjct: 253 KSTYPALL---------------------------------GLEGAQQKAHTLLQEALLA 279
Query: 397 IDSLPENNDEDVTKSRRALLDLTHRVITRN 426
++++P N + L + V+ R
Sbjct: 280 LEAIPYNTE--------HLEEFARYVVERK 301
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 111 bits (279), Expect = 5e-28
Identities = 74/313 (23%), Positives = 112/313 (35%), Gaps = 77/313 (24%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
GKR R L + +A + A+ E +H SL+HDD+
Sbjct: 41 GKRLRA--FLAIESAAIHGISMAQAMPAALAV---------------EALHAYSLVHDDM 83
Query: 188 --LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT------EVVTLLAT 239
+D+ D RRG+ +++ + AVLAGD L + A +V LA
Sbjct: 84 PCMDNDDLRRGLPTVHKKWDDAT-AVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQ 142
Query: 240 V--VEHLVTGETMQMT-TSSDQRCSMDY--YMQKTYYKTASLISNSCKAIALLAGQTAEV 294
E +V G+ + + ++ ++D +Q KT +LIS + +A A+LAG A+
Sbjct: 143 ASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQA--GKTGALISFAAQAGAILAG--ADR 198
Query: 295 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 354
L Y LGLA+Q+ DD+LD G + GK D T L
Sbjct: 199 GPLT-AYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL---------- 247
Query: 355 VVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRA 414
G+ + A A AA+ E
Sbjct: 248 -----------------------GLAGAKSRAADLVAEAEAALAPYGEAAS--------T 276
Query: 415 LLDLTHRVITRNK 427
L VI R+K
Sbjct: 277 LRACARYVIERDK 289
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 108 bits (272), Expect = 8e-27
Identities = 69/326 (21%), Positives = 114/326 (34%), Gaps = 70/326 (21%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+LA+A Y G GKR RP LL +AT ++ V +A E
Sbjct: 34 AQLAAAMTYSVLAG--GKRLRP--LLTVATMQSLGVTFVPERHWRPVMALE--------- 80
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALAS 227
++H SL+HDD+ +D+ RRG + + G + A LAGD LL+ A +
Sbjct: 81 ----LLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGM-ATLAGDGLLTLAFQWLTATD 135
Query: 228 LKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNS 280
L T L+ + +V G+ + S + + K KT +L+ +
Sbjct: 136 LPATMQAALVQALATAAGPSGMVAGQAKDIQ-SEHVNLPLSQLRVLHK--EKTGALLHYA 192
Query: 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 340
+A +L + GLA+Q+ DD+LD + A +GK + D T
Sbjct: 193 VQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTY 252
Query: 341 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 400
P G+ + + + AA+ L
Sbjct: 253 PGKL---------------------------------GLIGANQALIDTIHSGQAALQGL 279
Query: 401 PENNDEDVTKSRRALLDLTHRVITRN 426
P + T+ ++ R
Sbjct: 280 PTS-----TQRDDLAAFFSYFDTERV 300
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 107 bits (270), Expect = 8e-27
Identities = 72/327 (22%), Positives = 128/327 (39%), Gaps = 75/327 (22%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
P A K G GK FR LL++ + + + + AL A
Sbjct: 25 PFFNEALALMLKAG--GKHFRA--QLLLSVVQSNKP-----ELLNQALDV---------A 66
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALAS 227
E IH SL+HDD+ +D+AD RRGI +L+ + A+L GD L + A ++ A
Sbjct: 67 LALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYD-ETTAILVGDALNTEAFLVLSHAH 125
Query: 228 LKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLISNS 280
LK+ + L+ T+ + +V G+ + D+R S++ ++ +KTA LI+ +
Sbjct: 126 LKDEIKIKLIKTLAFNAGLNGMVIGQAIDCF-FEDKRLSLNELEFLHT--HKTARLIAAA 182
Query: 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 340
K + E + + G LGL +Q+ DD++D T + GK + +DI +
Sbjct: 183 LKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSF 240
Query: 341 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 400
L G+++ + N ++ L
Sbjct: 241 VNLL---------------------------------GLEQAIKTKENLLNECEQDLEKL 267
Query: 401 PENNDEDVTKSRRALLDLTHRVITRNK 427
E K + + +L + + +
Sbjct: 268 NE-------KLAQMIQNLIIQYLEGHH 287
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 107 bits (270), Expect = 1e-26
Identities = 82/305 (26%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L A Y G GKR RP LL++ T A E+ T+ +A
Sbjct: 36 ERLKEAMLYSIHAG--GKRLRP--LLVLTTV--------------AAFQKEMETQDYQVA 77
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRA--CVALAS 227
EMIH SL+HDD+ +DD D RRG + + V G A+LAGD LL+ A ++L+
Sbjct: 78 ASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEAT-AILAGDGLLTGAFQLLSLSQ 136
Query: 228 LKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLISNS 280
L +E V L+ + + +V+G+ + +++ + + KT +LI +
Sbjct: 137 LGLSEKVLLMQQLAKAAGNQGMVSGQMGDIE-GEKVSLTLEELAAVHE--KKTGALIEFA 193
Query: 281 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 340
A +LA QT EV L + + GLA+Q+ DD+LD T T A LGK D T
Sbjct: 194 LIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTY 253
Query: 341 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 400
P L GI ++ +A ++ +
Sbjct: 254 PALL---------------------------------GIAGAKDALTHQLAEGSAVLEKI 280
Query: 401 PENND 405
N
Sbjct: 281 KANVP 285
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics,
protein structure initiative, NEW YORK structural
genomix research consortium; 2.20A {Antirrhinum majus}
Length = 273
Score = 98.1 bits (245), Expect = 2e-23
Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 40/250 (16%)
Query: 101 KRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 159
L+ + P + + + L +A E + DA+
Sbjct: 19 SYLKKAIPIRAPESVFEPMHHLTFAA--PRTSAS--ALCVAAC------ELVGGDRSDAM 68
Query: 160 ATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLS 219
A A ++HVA+ H++ L D + + +L GD ++
Sbjct: 69 AA---------AAAVHLMHVAAYTHEN-LPLTDGPMSKSEIQHKFDPNI-ELLTGDGIIP 117
Query: 220 RACVALASLKNT---------EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDY--YM 266
+A + + L V+ E +V G+ ++ +Q ++ Y+
Sbjct: 118 FGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHEL--GLNQLNDLELIEYV 175
Query: 267 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD-FTGTSASL 325
K K +L + A+L G + +G +G L+ F G L
Sbjct: 176 CK--KKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGFEGRIKEL 233
Query: 326 GKGSLSDIRH 335
+ ++ ++
Sbjct: 234 KELAVKELES 243
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 94.9 bits (237), Expect = 3e-22
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 38/227 (16%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
K+ A Y G GKR RP +L +A V E A+ A
Sbjct: 38 LKIHEAMRYSLLAG--GKRVRP--VLCIAACELVGGEE------SLAMPA---------A 78
Query: 172 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLK 229
EMIH SL+HDD+ +D+ D RRG + + V G V AVLAGD LLS A LAS
Sbjct: 79 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDV-AVLAGDALLSFAFEHLASAT 137
Query: 230 NTEV--------VTLLATVV--EHLVTGET--MQMTTSSDQRCSMDY--YMQKTYYKTAS 275
++EV V LA + E LV G+ + +++ ++ +KTA+
Sbjct: 138 SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHL--HKTAA 195
Query: 276 LISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 322
L+ S ++ G + E + + +GL +Q++DD+LD T +S
Sbjct: 196 LLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate synthase,
transferase; 1.90A {Mentha x piperita} PDB: 3krc_B*
3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 86.9 bits (216), Expect = 2e-19
Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 50/250 (20%)
Query: 128 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 187
L +A E + A+A A ++H A+ +H+ +
Sbjct: 40 PATAAS--TLCLAAC------ELVGGDRSQAMAA---------AAAIHLVHAAAYVHEHL 82
Query: 188 -LDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNT----------EVVTL 236
L D ++ G V +L GD ++ LA + V+
Sbjct: 83 PLTDGSRPVSKPAIQHKYGPNV-ELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIE 141
Query: 237 LATVV--EHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNSCKAIALLAGQTA 292
++ E +++G + D S+D+ Y+ K K + + A+L G
Sbjct: 142 ISRAGGPEGMISGLHREEE-IVDGNTSLDFIEYVCK--KKYGEMHACGAACGAILGGAAE 198
Query: 293 EVAILAFDYGKNLGL---------AYQLIDDVLD---FTGTSASLGK--GSLSDIRHGII 338
E ++G G ++QLID+ + LG G +++ ++
Sbjct: 199 EEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGGFHGKNAELMSSLV 258
Query: 339 TAPILFAMEE 348
P L+A
Sbjct: 259 AEPSLYAAHH 268
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 84.5 bits (208), Expect = 2e-18
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 27/236 (11%)
Query: 101 KRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 159
+R+R ++ A Y +G G R RP ++L + L V L
Sbjct: 20 ERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEEEXLLD------- 70
Query: 160 ATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKVLAVLAGDFL 217
+A E+ H ASL+HDD+ +D+AD RRG S + G + +A+LAGD L
Sbjct: 71 ----------VAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYG-EDIALLAGDGL 119
Query: 218 LSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASL 276
A ++ + N+ + + L+ GE M + S + + + T +L
Sbjct: 120 FFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGAL 179
Query: 277 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 332
+ A +L G G+ G+A+Q+ DD+ D G+ +GK D
Sbjct: 180 FAFCFSAPFILXGXDHTXMX---LLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 4e-11
Identities = 59/471 (12%), Positives = 122/471 (25%), Gaps = 168/471 (35%)
Query: 55 YSWSLPALHGIRHQIHHQSSSVIEDTD----SQEQLDPFSLV----ADELSILAKRLRS- 105
Y + + + + Q + IE D + +++ +L LR
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 106 -------M-------VVAEVPKLASAAEYFFKMGVE----GKRFRPTVLLLMATALNVRV 147
+ V +V + + + P +L M L ++
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 148 PEPLHDGVEDALATELRTRQQCIAEITEMI----HVASLLHDDVLDDADTRRGIGSLNFV 203
+ + +LR AE+ ++ + LL VL + + + N
Sbjct: 210 DPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNL- 264
Query: 204 MGNKVLAVLAGDFLLSR-ACVA----------------LASLKNTEVVTLLATVVEHLVT 246
K+L L +R V +L EV +LL ++
Sbjct: 265 -SCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 247 GETMQMTTSSDQRCSM------------DYYMQKTYYKTASLISNSCKAIALLAGQTAEV 294
++ T++ +R S+ D + K ++I +S +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------------L 363
Query: 295 AILAFDYGKNLGLAYQLI----DDVLDFTGTSASLGKGSLSDIRHGIITAPIL------- 343
+L + + + + I +L
Sbjct: 364 NVLEPAEYRKM---FDRLSVFPPSAH---------------------IPTILLSLIWFDV 399
Query: 344 ------FAMEEFPQLRTVVEQGFEDSSNV-DIALEYLGKSRGIQKTRELAVKHANLAAAA 396
+ + + V +Q E + ++ I LE K H ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK------VKLENEYALHRSI---- 449
Query: 397 IDS------------LPENND-----------------EDVTKSRRALLDL 418
+D +P D E +T R LD
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Score = 46.0 bits (108), Expect = 2e-05
Identities = 53/408 (12%), Positives = 114/408 (27%), Gaps = 112/408 (27%)
Query: 63 HGIRHQIHHQSSSVIEDTDSQEQLDPFSLVADEL-SILAKRLRSMVVAEVPKLASAAEYF 121
+ + + + +++ D ++ V D SIL+K ++ S
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKD-------VQDMPKSILSKEEIDHIIMS-KDAVSGTLRL 67
Query: 122 FKM----GVEG-KRFRPTVL------LLMATALNVRVP-----------EPLHDGVEDAL 159
F E ++F VL L+ R P + L++ +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VF 126
Query: 160 ATELRTRQQCIAEITEMIHVAS-----LLHDDVLDDADTRRG-IGSLNFVMGNKVLA--V 211
A +R Q ++ + + L+ G +GS G +A V
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLID-----------GVLGS-----GKTWVALDV 170
Query: 212 LAGDFLLSRAC--VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 269
+ + + +LKN + +++ L+ T+ SD ++ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 270 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD------FTGTSA 323
+ L+ + LL +L +V + F +
Sbjct: 231 QAELRRLLKSKPYENCLL--------VL---------------LNVQNAKAWNAFNLSCK 267
Query: 324 SL---GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 380
L ++D T I +++ + L+YL Q
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHI--SLDHH-------SMTLTPDEVKSLLLKYLDCR--PQ 316
Query: 381 KTRELAVKHANLAAAAI-----------DSLPENNDEDVTKSRRALLD 417
+ + I D+ N + +T + L+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 7e-09
Identities = 66/433 (15%), Positives = 114/433 (26%), Gaps = 163/433 (37%)
Query: 7 LSRISRISKKTS--FGR-----RWL------PSHPLLSGASHSAAAAAADSSVKVLGCRE 53
LS + R + F + WL P L S
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL----SIPI-------------- 236
Query: 54 AYSWSLPALHGIRHQIHHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPK 113
S P L G+ Q+ H T P L L + +V A
Sbjct: 237 ----SCP-LIGV-IQLAH-----YVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIA 284
Query: 114 LASAAEYF-----------FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 162
+ E F F +GV P T+L P L D +E+
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPN------TSLP---PSILEDSLENNEGVP 335
Query: 163 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRAC 222
+ M+ +++L + V D + N + L +
Sbjct: 336 -----------SPMLSISNLTQEQVQDY------VNKTN--------SHLPAGKQVE--- 367
Query: 223 VALASLKNTE---VVT----LLATVVEHLVTGETMQMTTSSDQ----------RCSMDY- 264
SL N VV+ L + L + + DQ + S +
Sbjct: 368 ---ISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 265 ---------YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL-----GLAYQ 310
+ + + + K + ++ + G +L ++ +
Sbjct: 422 PVASPFHSHLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 311 LIDD------------------VLDFTGTSASLGKGSL-SDIRHG----IITAPILFAME 347
++D +LDF G + G G L + G +I A ++
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDF-GPGGASGLGVLTHRNKDGTGVRVIVA---GTLD 534
Query: 348 EFPQLRTVVEQGF 360
P + GF
Sbjct: 535 INPDD----DYGF 543
Score = 45.4 bits (107), Expect = 3e-05
Identities = 51/285 (17%), Positives = 86/285 (30%), Gaps = 87/285 (30%)
Query: 82 SQEQ------LDPFSLV------ADE-------LSILAKRLRSMVVAEVPKLASAAEYFF 122
SQEQ AD SIL +V P + +F
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD------IVINNPV--NLTIHF- 1676
Query: 123 KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 182
G +GKR R ++ E + DG ++ EI E +
Sbjct: 1677 -GGEKGKRIRENYSAMIF--------ETIVDGKLKT--------EKIFKEINEHSTSYTF 1719
Query: 183 LHD-DVLDD-ADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACV----------ALASLKN 230
+ +L T+ + +M L L+ ALASL
Sbjct: 1720 RSEKGLLSATQFTQPAL----TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-- 1773
Query: 231 TEVVTLLATVVEHLVT--GETMQMTTSSDQRCSMDYYM------QKTYYKTASLISNSCK 282
+V+++ + V +V G TMQ+ D+ +Y M + + + +
Sbjct: 1774 ADVMSIESLV--EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 283 AIALLAGQTAEVA---------ILAFDYGKNLGLAYQLIDDVLDF 318
+ G E+ + A G L + +VL+F
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAA---GDLRAL--DTVTNVLNF 1871
Score = 41.6 bits (97), Expect = 5e-04
Identities = 47/245 (19%), Positives = 80/245 (32%), Gaps = 78/245 (31%)
Query: 1 MLIYRGLSR---ISRISKKTSFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSW 57
ML L++ ++K LP+ + + + A + V V G
Sbjct: 338 MLSISNLTQEQVQDYVNKT----NSHLPAGKQVEISLVN----GAKNLV-VSG------- 381
Query: 58 SLP-ALHGIRHQIHHQSSSVIEDTDSQEQLDPFSLVADELSILAKR-----LRSMVVAEV 111
P +L+G+ + + D Q ++ PFS +R R + VA
Sbjct: 382 -PPQSLYGLNLTLRKAKAPSGLD---QSRI-PFS----------ERKLKFSNRFLPVA-S 425
Query: 112 P----KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167
P L A++ K + A + + P++D D ++LR
Sbjct: 426 PFHSHLLVPASDLIN------KDLVKNNVSFNAKDIQI----PVYD-TFD--GSDLRVLS 472
Query: 168 QCIAE-ITEMI----------HVASLLHDDVLD-DADTRRGIGSLNFVMGNK----VLAV 211
I+E I + I H +LD G+G L NK V +
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATH--ILDFGPGGASGLGVL--THRNKDGTGVRVI 528
Query: 212 LAGDF 216
+AG
Sbjct: 529 VAGTL 533
Score = 38.5 bits (89), Expect = 0.004
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 324 SLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGF----EDSSNVDIALEYLG 374
+L GS + H ++ F + E+F ++ +GF E ++ ++ ++LG
Sbjct: 10 TLSHGS---LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 375 -----KSRGIQKTRELAVK----------------HANLAAAAIDSLPENNDEDVTKSRR 413
+ + HA LAA L + ND + K++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LAA----KLLQENDTTLVKTKE 121
Query: 414 AL 415
+
Sbjct: 122 LI 123
Score = 33.1 bits (75), Expect = 0.20
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 36/124 (29%)
Query: 4 YRGLSRISRISKKTSFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLPALH 63
YRG++ + + GR S+ A V +E AL
Sbjct: 1788 YRGMT-MQVAVPRDELGR------------SNYGMIAINPGRVAASFSQE-------ALQ 1827
Query: 64 GIRHQIHHQSSSVIE---DTDSQEQ---------LDPFSLVADELSI----LAKRLRSMV 107
+ ++ ++ ++E +Q LD + V + + + + + +S+
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 108 VAEV 111
+ EV
Sbjct: 1888 LEEV 1891
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.70
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 238 ATVVEHLVT-GETMQMTTSSDQRCSMDYYMQKTYYKTAS 275
A V++ L+ G + +TTS + DYY Q Y K +
Sbjct: 491 AEVLQGLLQGGAKVVVTTSRFSKQVTDYY-QSIYAKYGA 528
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 28.2 bits (63), Expect = 5.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 153 DGVEDALATELRTRQQCIAEI--TEMIHVASL 182
V L + RQ+ I E+ E + L
Sbjct: 7 GCVNQVLTAKEIKRQEAIFELSQGEEDLIEDL 38
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.3 bits (64), Expect = 6.1
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 334 RHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYL 373
R + E L +V Q DS N+D ALE L
Sbjct: 243 REKELEVSGWTK-AELEALTPIVNQANSDSYNLDSALELL 281
>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
rossman fold and helix B (MTAC); HET: B13; 2.50A
{Methanosarcina barkeri}
Length = 461
Score = 28.1 bits (62), Expect = 7.2
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 137 LLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRG 196
L T ++R D + L +QC +++ V S+ +V D A R
Sbjct: 121 ALRHTIGDIRENREFLQLRGDKYSVFLEAFEQCAENGADLLSVESMGGKEVFDYAVLRND 180
Query: 197 IGSLNFVMG 205
I L + +G
Sbjct: 181 IPGLLYSIG 189
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint
center for structural genomics, JCSG; HET: MSE FLC;
2.00A {Streptococcus agalactiae 2603V}
Length = 181
Score = 27.1 bits (60), Expect = 9.6
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 281 CKAIALLAGQTAEVAILAFD---YGKNLGLAYQLIDDVLDF 318
A+ + +TA + G + L +L + + F
Sbjct: 85 SIALLRIDDKTAVLKKFFTYPKYRGNPVRLGRKLFERFMLF 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.367
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,434,226
Number of extensions: 405551
Number of successful extensions: 996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 64
Length of query: 427
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 331
Effective length of database: 4,021,377
Effective search space: 1331075787
Effective search space used: 1331075787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)