RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014276
(427 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 114 bits (286), Expect = 1e-29
Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 32/312 (10%)
Query: 114 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 174 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV 233
TEM+H ASLL DD+ D++ RRG + + G + A L V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 234 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 293
++E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 294 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME---EFP 350
+ LGL +Q+ DD + S K D+ G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 351 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 410
Q++ ++ Q E+ + YL + TR + A ID+ N
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN------P 277
Query: 411 SRRALLDLTHRV 422
AL+ ++
Sbjct: 278 ELVALVKHLSKM 289
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 96.7 bits (239), Expect = 3e-23
Identities = 64/310 (20%), Positives = 125/310 (40%), Gaps = 32/310 (10%)
Query: 93 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLH 152
+ EL + +R+ ++ P+ + GK R + +L V + E
Sbjct: 2 SYELEKVKERIEQILSQFFPE---QIMKDLPLY--GKMLRVRLSILSFKNRGVEIGEDAI 56
Query: 153 DGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVLAVL 212
E++H+ASLLHDDV+D A RRG ++NF+ G+K A +
Sbjct: 57 S----------------SLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDK--AAV 98
Query: 213 AGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYK 272
A L+ + + V ++ + S + + + Y++ K
Sbjct: 99 AAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGK 158
Query: 273 TASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 332
+ +L + + ALL G+ E ++ G +G YQ+ DD++DF G G D
Sbjct: 159 SGALFGLALQLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LD 214
Query: 333 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 392
+++G+ + P++ AME+FP+ R + E + + ++ + +++ E
Sbjct: 215 LKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKN 269
Query: 393 AAAAIDSLPE 402
L +
Sbjct: 270 VIIENSWLRD 279
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 96.2 bits (238), Expect = 5e-23
Identities = 81/360 (22%), Positives = 135/360 (37%), Gaps = 75/360 (20%)
Query: 81 DSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMA 140
D +QL+ + V L++ + + P + +Y +G GKR RP ++
Sbjct: 2 DFPQQLE--ACVKQANQALSRFIAPLPFQNTP-VVETMQYGALLG--GKRLRPFLVYATG 56
Query: 141 TALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR--GIG 198
V A E IH SL+HDD+ D G+
Sbjct: 57 HMFGVS-----------------TNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLP 99
Query: 199 SLNFVMGNKVLAVLAGDFLLSRACVALASLKNTEV----------VTLLATVVEHLVTGE 248
+ + G A+LAGD L + A L+ EV A+ + + G+
Sbjct: 100 TCHVKFGEAN-AILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQ 158
Query: 249 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFD-YGKNLGL 307
+ + + + +D + +KT +LI + + AL AG A+ D Y +++GL
Sbjct: 159 ALDLD-AEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGL 217
Query: 308 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVD 367
A+Q+ DD+LD G +A+LGK +D + G T P L +E
Sbjct: 218 AFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLE-------------------- 257
Query: 368 IALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 427
+ R+ A + A ++ L E + + AL L +I RNK
Sbjct: 258 -------------QARKKARDLIDDARQSLKQLAEQSLD-----TSALEALADYIIQRNK 299
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 96.6 bits (239), Expect = 8e-23
Identities = 64/372 (17%), Positives = 120/372 (32%), Gaps = 41/372 (11%)
Query: 73 SSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRF 131
S V+E + +E + F + +L + V + L +Y GK
Sbjct: 1 SPVVVER-EREEFVGFFPQIVRDL--TEDGIGHPEVGDAVARLKEVLQYNA---PGGKCN 54
Query: 132 RPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191
R ++ L+ + + + ALA + E+ L+ DD++D +
Sbjct: 55 RGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAFFLVADDIMDQS 104
Query: 192 DTRRGIGSLNFVMGNKVLAVLAGDFLLSRA-----------CVALASLKNTEVVTLLATV 240
TRRG G + + FLL + L + T T
Sbjct: 105 LTRRGQLCWYKKEGVGL-DAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTE 163
Query: 241 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAGQTAEVAILA 298
+ ++ T ++ S + Y YKTA A+ ++ + E A
Sbjct: 164 LGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENA 223
Query: 299 FDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVE 357
+G +Q+ DD LD G A GK +DI+ + ++ ++ P+ R ++E
Sbjct: 224 KAILLEMGEYFQIQDDYLDCFGDPALTGKVG-TDIQDNKCSWLVVQCLQRVTPEQRQLLE 282
Query: 358 QGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 415
+ + V E ++ I+ +
Sbjct: 283 DNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNR------LPKEIF 336
Query: 416 LDLTHRVITRNK 427
L L ++ R K
Sbjct: 337 LGLAQKIYKRQK 348
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 77.4 bits (189), Expect = 1e-16
Identities = 68/323 (21%), Positives = 111/323 (34%), Gaps = 68/323 (21%)
Query: 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171
+L + Y G GKR RP +LLL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSA 67
Query: 172 EITEMIHVASLLHDDVLDDADTRRG-IGSLNFVMGNKVLAVLAGDFLLSRACVALASLKN 230
EMIH SL+HDD+ + N + + A+LAGD LL++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 231 TEVVTL--------LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 282
+A+ +V G+ + M S Q ++ KT +L++ +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHKTKTGALLTFAVM 186
Query: 283 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 342
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + T
Sbjct: 187 SAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 246
Query: 343 LFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 402
L G + H + A + + E
Sbjct: 247 LL---------------------------------GKDGAEDKLTYHRDAAVDELTQIDE 273
Query: 403 NNDEDVTKSRRALLDLTHRVITR 425
+ + LL++ +R
Sbjct: 274 QFN------TKHLLEIVDLFYSR 290
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 139
Score = 26.5 bits (58), Expect = 4.2
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 308 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE---DSS 364
+L + + + + E + V +G+ D
Sbjct: 36 VEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDEEFERPLEGTLVHPEGYVIRSDVD 95
Query: 365 NVDIALEYLGKSR-----GIQKTRELAVKHANLAAAAIDSLPEN 403
+ + +GK+ G+ L N+A +I P+N
Sbjct: 96 DGPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQPKN 139
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 26.6 bits (58), Expect = 4.9
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 152 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 198
+ + T + ++ + AS + D V+D +TR+ I
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIM 241
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 25.9 bits (56), Expect = 8.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 142 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 198
A+N+ + D +DA AT R Q+ + A + D V+ +DTRR I
Sbjct: 183 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.367
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,456,542
Number of extensions: 64236
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 12
Length of query: 427
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,199,356
Effective search space: 406581684
Effective search space used: 406581684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)