Query 014279
Match_columns 427
No_of_seqs 276 out of 2150
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 7.3E-09 2.5E-13 87.0 7.7 62 338-399 43-105 (137)
2 3b5d_A Multidrug transporter E 98.4 2.9E-06 9.8E-11 68.5 10.9 72 175-246 33-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 1.3E-06 4.3E-11 73.3 7.8 71 175-245 33-104 (137)
4 3b5d_A Multidrug transporter E 97.8 7.5E-05 2.6E-09 60.1 8.8 58 340-397 45-103 (110)
5 3l1l_A Arginine/agmatine antip 58.3 22 0.00075 34.4 7.6 22 380-401 409-430 (445)
6 3b9w_A Ammonium transporter fa 40.1 2.6E+02 0.0091 27.0 19.8 96 167-264 172-273 (407)
7 4fc4_A Nitrite transporter NIR 30.4 3E+02 0.01 24.7 11.9 20 279-298 103-122 (261)
8 3rko_J NADH-quinone oxidoreduc 28.6 2.2E+02 0.0076 24.2 8.1 34 367-400 128-161 (184)
9 2xq2_A Sodium/glucose cotransp 19.2 7E+02 0.024 25.0 16.4 31 363-393 532-562 (593)
10 2l16_A SEC-independent protein 13.5 2.6E+02 0.0089 20.1 4.4 70 358-427 6-77 (78)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.82 E-value=7.3e-09 Score=86.95 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHhhccChhHHHHH-HHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 014279 338 YNQLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 399 (427)
Q Consensus 338 ~~~~~~~~l~~~sa~~~sv~-~~l~~v~~i~ls~~~fge~ls~~~~iG~~lvl~Gv~ly~~~~ 399 (427)
..++..+++++.++.....+ ..+.|++++++++++|||++|+.+++|++++++|+++.+..+
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33455678899999887666 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.37 E-value=2.9e-06 Score=68.49 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHhhhhhhccCC
Q 014279 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (427)
Q Consensus 175 ~~~~~~~~~l~~~l~~~al~~~~~s~~~ii-~s~~Pv~~~il~~l~l~er~~~~~~l~l~l~~~Gv~l~~~~~ 246 (427)
.+...+++.++..+...++++.|.+.+..+ .++.|+++.+++++++||+++..+++|++++++|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345555677888999999999999999888 899999999999999999999999999999999999886544
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.32 E-value=1.3e-06 Score=73.29 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHhhhhhhccC
Q 014279 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 245 (427)
Q Consensus 175 ~~~~~~~~~l~~~l~~~al~~~~~s~~~ii-~s~~Pv~~~il~~l~l~er~~~~~~l~l~l~~~Gv~l~~~~ 245 (427)
.+...+++.++.++.+.++++++++.+..+ .++.|++++++++++++|+++..+++|++++++|+++....
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345555677889999999999999998888 89999999999999999999999999999999999988653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.83 E-value=7.5e-05 Score=60.08 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHHHHhhccChhHHHHH-HHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHH
Q 014279 340 QLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 397 (427)
Q Consensus 340 ~~~~~~l~~~sa~~~sv~-~~l~~v~~i~ls~~~fge~ls~~~~iG~~lvl~Gv~ly~~ 397 (427)
++...++++.+....... ..+.++.+.++++++|||++|+.+++|.+++++|+.+.+.
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344467888888877555 7899999999999999999999999999999999998764
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=58.33 E-value=22 Score=34.43 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 014279 380 QTGIGTVIAIAGVAAYSYIKAQ 401 (427)
Q Consensus 380 ~~~iG~~lvl~Gv~ly~~~~~~ 401 (427)
..+.|.++++.|+.+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566888899999998876654
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=40.09 E-value=2.6e+02 Score=26.96 Aligned_cols=96 Identities=6% Similarity=-0.077 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcccchhH-----HHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHhhhhh
Q 014279 167 IDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSF-----THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (427)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~l~~~al~~~~~s~-----~~ii~s~~Pv~~~il~~l~l~er~~~~~~l~l~l~~~Gv~l 241 (427)
.+.+......+..++.-.+-...|-++..-...- +.+-.+..-+..+++++++.++|++......- +++|.+-
T Consensus 172 ~~~hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVA 249 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANA--ALAGGVA 249 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH--TTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHh--hhhhhhe
Confidence 4455444444444443344444555543222111 22222333444445555555567776554332 3444443
Q ss_pred hc-cCCccchHHHHHHHHHHHHHH
Q 014279 242 AS-LTELSFNWTGFISAMISNISF 264 (427)
Q Consensus 242 ~~-~~~~~~~~~G~~l~l~a~l~~ 264 (427)
++ ..+.-..+..++..+++.+..
T Consensus 250 ITa~~~~v~p~~A~iIG~iaG~i~ 273 (407)
T 3b9w_A 250 IGSVCNIVGPVGAFVIGLLGGAIS 273 (407)
T ss_dssp HTTTTTTSCHHHHHHHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHHHHH
Confidence 33 233322333444444444443
No 7
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=30.41 E-value=3e+02 Score=24.72 Aligned_cols=20 Identities=0% Similarity=-0.267 Sum_probs=13.2
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 014279 279 DSTNIYAYISIIALFVCIPP 298 (427)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~ 298 (427)
..+...+.-|++++++...+
T Consensus 103 r~W~~v~~gNliGa~~~a~l 122 (261)
T 4fc4_A 103 AILPQTWLGNLVGSVFVALL 122 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777788887766543
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=28.62 E-value=2.2e+02 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014279 367 GFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 400 (427)
Q Consensus 367 ~ls~~~fge~ls~~~~iG~~lvl~Gv~ly~~~~~ 400 (427)
-+|..+|++-+=+.++.|..+..+=+......|+
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888998889999998887655555444443
No 9
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=19.21 E-value=7e+02 Score=25.01 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHHH
Q 014279 363 VFVIGFSILAFGNKISTQTGIGTVIAIAGVA 393 (427)
Q Consensus 363 v~~i~ls~~~fge~ls~~~~iG~~lvl~Gv~ 393 (427)
+..++.-+++|.++....-.+...++++|+.
T Consensus 532 ~~~~~~~~~~f~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 532 MIVLAVLYTLFWVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3444444556667777777778888888876
No 10
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=13.47 E-value=2.6e+02 Score=20.13 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhcccccCCCCCCCcccCC
Q 014279 358 NVLKRVFVIGFSILAFGNK--ISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRVSIILLYNHHTDTHTHTYSH 427 (427)
Q Consensus 358 ~~l~~v~~i~ls~~~fge~--ls~~~~iG~~lvl~Gv~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (427)
+...-++..++..++||-. +....-+|-.+--.=-..-......+++.+.+......++-.+...|.|.|
T Consensus 6 g~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~~~~~~~~el~~~~~~~~~~~~~~~~~ 77 (78)
T 2l16_A 6 GIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELTAVKQDKNAGLEHHHHH 77 (78)
T ss_dssp CHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------
T ss_pred CHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhhhHHhhHHHHHHHHHHHHHHHHhhccC
Done!