Query 014279
Match_columns 427
No_of_seqs 276 out of 2150
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 08:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014279.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014279hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 17.3 3.1E+02 0.022 23.9 24.4 78 215-295 245-324 (383)
2 d1iwga7 f.35.1.1 (A:7-37,A:331 13.4 2.7E+02 0.02 21.4 9.3 49 347-395 61-109 (199)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.8 4E+02 0.029 21.5 7.6 53 175-231 5-57 (248)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 7.3 1.4E+02 0.01 15.0 2.1 18 252-269 3-20 (27)
5 d1iwga8 f.35.1.1 (A:513-566,A: 4.9 6.6E+02 0.048 19.2 12.2 31 363-393 95-125 (222)
6 d1q90a3 f.23.23.1 (A:248-292) 3.8 2.6E+02 0.019 16.2 1.9 28 252-279 6-33 (45)
7 d1ppjd2 f.23.11.1 (D:196-241) 2.7 5.7E+02 0.042 14.7 3.8 22 380-401 11-32 (46)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 2.3 1.3E+03 0.097 18.1 28.2 11 211-221 195-205 (447)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 2.0 4.2E+02 0.03 17.7 1.7 18 384-401 38-55 (100)
10 d1y5ic1 f.21.3.1 (C:1-225) Res 1.9 7.3E+02 0.053 19.0 3.5 17 383-399 96-112 (225)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=17.33 E-value=3.1e+02 Score=23.85 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHhCcccChhhHHHHHHHHhhhhhhccCCccchHH-HHHHHHHHH-HHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 014279 215 ASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWT-GFISAMISN-ISFTYRSIYSKKAMTDMDSTNIYAYISIIAL 292 (427)
Q Consensus 215 l~~l~l~er~~~~~~l~l~l~~~Gv~l~~~~~~~~~~~-G~~l~l~a~-l~~a~~~v~~kk~~~~~~~~~~~~~~~~~~~ 292 (427)
+...+.++|++...... -.++|.+-++....-.+++ .++..+++. +|+-....+.+|. +--|+..........+.
T Consensus 245 ~~~~~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~~~vHg~~Gi 321 (383)
T d1u7ga_ 245 FGEWALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGVHGVCGI 321 (383)
T ss_dssp HHHHHHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-ccccccceEeehhhhHH
Confidence 33334556777665443 2344555544333323333 355555544 3443334343343 43455555444444443
Q ss_pred HHH
Q 014279 293 FVC 295 (427)
Q Consensus 293 ~~~ 295 (427)
.-.
T Consensus 322 ~G~ 324 (383)
T d1u7ga_ 322 VGC 324 (383)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 2
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.39 E-value=2.7e+02 Score=21.40 Aligned_cols=49 Identities=22% Similarity=0.106 Sum_probs=34.0
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHH
Q 014279 347 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 395 (427)
Q Consensus 347 ~~~sa~~~sv~~~l~~v~~i~ls~~~fge~ls~~~~iG~~lvl~Gv~ly 395 (427)
+..-+.........-.+........++|.+++.....+..+.++...-+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 4444444445555555666667778889999999999888887776644
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.76 E-value=4e+02 Score=21.54 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhhHHHHHHHHHHHhCcccChhhHHH
Q 014279 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLS 231 (427)
Q Consensus 175 ~~~~~~~~~l~~~l~~~al~~~~~s~~~ii~s~~Pv~~~il~~l~l~er~~~~~~l~ 231 (427)
++++|++..+..+.....+..-+...+. ..-+.+.++.++++.+|.-.++|+-
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 4556676666666555555555554433 3345666777888888877777754
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.31 E-value=1.4e+02 Score=15.02 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014279 252 TGFISAMISNISFTYRSI 269 (427)
Q Consensus 252 ~G~~l~l~a~l~~a~~~v 269 (427)
.|.+..-++.++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777777888877643
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=6.6e+02 Score=19.24 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHHH
Q 014279 363 VFVIGFSILAFGNKISTQTGIGTVIAIAGVA 393 (427)
Q Consensus 363 v~~i~ls~~~fge~ls~~~~iG~~lvl~Gv~ 393 (427)
++..+.+..+++.+++....+|..+.++...
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 3455667778899999999888777555443
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.78 E-value=2.6e+02 Score=16.23 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014279 252 TGFISAMISNISFTYRSIYSKKAMTDMD 279 (427)
Q Consensus 252 ~G~~l~l~a~l~~a~~~v~~kk~~~~~~ 279 (427)
.|++.-+.+.+..-...|+-||-.+++.
T Consensus 6 ~gll~F~~~v~laQi~LVLKKKQfEKVQ 33 (45)
T d1q90a3 6 QGLLVFFSFVLLTQVLLVLKKKQFEKVQ 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555666666555543
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.67 E-value=5.7e+02 Score=14.71 Aligned_cols=22 Identities=0% Similarity=-0.333 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 014279 380 QTGIGTVIAIAGVAAYSYIKAQ 401 (427)
Q Consensus 380 ~~~iG~~lvl~Gv~ly~~~~~~ 401 (427)
..++.+..++.++..|......
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666677777666654443
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.26 E-value=1.3e+03 Score=18.11 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=4.5
Q ss_pred HHHHHHHHHhC
Q 014279 211 FNAAASQFILG 221 (427)
Q Consensus 211 ~~~il~~l~l~ 221 (427)
...++.+++.+
T Consensus 195 ~~~~~~~~~~~ 205 (447)
T d1pw4a_ 195 LVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcc
Confidence 33444444433
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.03 E-value=4.2e+02 Score=17.75 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014279 384 GTVIAIAGVAAYSYIKAQ 401 (427)
Q Consensus 384 G~~lvl~Gv~ly~~~~~~ 401 (427)
+..+++.|...|...|.|
T Consensus 38 ~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 334445666666665554
No 10
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=1.92 E-value=7.3e+02 Score=19.04 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014279 383 IGTVIAIAGVAAYSYIK 399 (427)
Q Consensus 383 iG~~lvl~Gv~ly~~~~ 399 (427)
++.+++++|+...-+.+
T Consensus 96 i~g~l~liG~~~ll~RR 112 (225)
T d1y5ic1 96 ASGVLCLIGGVLLLKRR 112 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444333
Done!