Query 014283
Match_columns 427
No_of_seqs 180 out of 587
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lzd_A DPH2; diphthamide biosy 100.0 4.9E-80 1.7E-84 621.6 30.4 272 1-307 87-358 (378)
2 1byk_A Protein (trehalose oper 83.1 2.6 8.9E-05 38.2 7.2 77 208-285 2-84 (255)
3 3hs3_A Ribose operon repressor 80.7 3.5 0.00012 38.0 7.2 78 205-285 7-90 (277)
4 3ixl_A Amdase, arylmalonate de 77.1 7.4 0.00025 36.1 8.2 80 206-291 115-216 (240)
5 3cs3_A Sugar-binding transcrip 75.3 3.7 0.00013 37.7 5.6 63 206-270 6-68 (277)
6 3kke_A LACI family transcripti 75.1 3.6 0.00012 38.4 5.6 76 207-285 14-99 (303)
7 3hr4_A Nitric oxide synthase, 74.4 12 0.00041 34.4 8.7 72 191-267 22-94 (219)
8 3egc_A Putative ribose operon 74.0 3.9 0.00013 37.7 5.4 79 205-284 5-91 (291)
9 3e61_A Putative transcriptiona 73.5 2.2 7.4E-05 39.2 3.5 61 206-267 6-72 (277)
10 3o74_A Fructose transport syst 73.5 4.1 0.00014 37.0 5.4 61 208-269 2-68 (272)
11 3jvd_A Transcriptional regulat 71.1 5.8 0.0002 37.8 6.0 73 207-285 63-141 (333)
12 3brs_A Periplasmic binding pro 69.5 5.7 0.00019 36.4 5.4 80 206-285 3-95 (289)
13 5nul_A Flavodoxin; electron tr 67.4 9.6 0.00033 31.3 5.9 55 211-270 1-55 (138)
14 3l6u_A ABC-type sugar transpor 67.2 4.7 0.00016 37.1 4.3 66 205-271 5-76 (293)
15 3uug_A Multiple sugar-binding 67.2 5.8 0.0002 37.2 5.0 64 207-271 2-71 (330)
16 3gyb_A Transcriptional regulat 67.0 6.8 0.00023 35.8 5.4 62 206-271 3-71 (280)
17 3tb6_A Arabinose metabolism tr 66.0 5.2 0.00018 36.7 4.4 60 209-269 16-81 (298)
18 3miz_A Putative transcriptiona 65.0 6.7 0.00023 36.4 4.9 80 205-285 10-97 (301)
19 3g1w_A Sugar ABC transporter; 64.9 6.4 0.00022 36.4 4.8 64 208-271 4-73 (305)
20 3m9w_A D-xylose-binding peripl 64.2 14 0.00046 34.4 7.0 77 208-285 2-88 (313)
21 3f6r_A Flavodoxin; FMN binding 62.2 15 0.0005 30.5 6.1 58 209-270 2-59 (148)
22 2iks_A DNA-binding transcripti 61.5 15 0.00052 33.7 6.7 79 206-285 18-105 (293)
23 3fni_A Putative diflavin flavo 61.2 13 0.00044 31.9 5.7 62 208-271 4-67 (159)
24 2xed_A Putative maleate isomer 60.8 29 0.001 32.5 8.6 81 206-291 144-244 (273)
25 3clk_A Transcription regulator 60.1 8.3 0.00028 35.5 4.6 79 206-285 6-93 (290)
26 2fep_A Catabolite control prot 58.9 5.4 0.00019 36.9 3.1 65 204-269 12-82 (289)
27 2fz5_A Flavodoxin; alpha/beta 58.7 32 0.0011 27.6 7.6 55 211-270 2-56 (137)
28 3jy6_A Transcriptional regulat 58.4 11 0.00039 34.2 5.2 79 206-285 5-90 (276)
29 3g85_A Transcriptional regulat 58.1 9 0.00031 35.1 4.4 66 205-270 8-79 (289)
30 2l2q_A PTS system, cellobiose- 57.6 35 0.0012 27.2 7.5 73 213-290 8-88 (109)
31 3qk7_A Transcriptional regulat 57.3 9 0.00031 35.5 4.3 65 206-270 4-76 (294)
32 3o1i_D Periplasmic protein TOR 56.4 15 0.00051 33.7 5.6 65 207-271 4-75 (304)
33 3l49_A ABC sugar (ribose) tran 56.3 5.9 0.0002 36.3 2.8 63 206-269 3-71 (291)
34 3hly_A Flavodoxin-like domain; 55.3 18 0.0006 30.9 5.6 60 210-271 2-62 (161)
35 1f4p_A Flavodoxin; electron tr 55.1 23 0.00077 29.2 6.1 57 210-271 2-59 (147)
36 3k4h_A Putative transcriptiona 54.7 6.5 0.00022 36.1 2.8 63 205-269 5-79 (292)
37 3h5o_A Transcriptional regulat 54.0 18 0.00062 34.1 6.0 63 207-270 61-129 (339)
38 3e3m_A Transcriptional regulat 52.8 17 0.00057 34.8 5.5 79 206-285 68-154 (355)
39 3trh_A Phosphoribosylaminoimid 52.5 29 0.001 30.6 6.4 77 205-284 3-88 (169)
40 1gud_A ALBP, D-allose-binding 52.1 14 0.00049 33.9 4.8 62 208-269 1-69 (288)
41 3brq_A HTH-type transcriptiona 51.9 14 0.00047 33.8 4.6 62 207-269 18-87 (296)
42 2fn9_A Ribose ABC transporter, 51.0 16 0.00054 33.4 4.8 61 209-270 3-69 (290)
43 3k9c_A Transcriptional regulat 48.5 35 0.0012 31.2 6.9 64 206-271 10-78 (289)
44 3c3k_A Alanine racemase; struc 48.3 32 0.0011 31.3 6.5 62 206-268 6-73 (285)
45 3ctp_A Periplasmic binding pro 48.1 41 0.0014 31.5 7.4 77 206-285 58-140 (330)
46 3gv0_A Transcriptional regulat 47.0 10 0.00035 34.9 2.9 63 205-268 5-75 (288)
47 2h3h_A Sugar ABC transporter, 47.0 16 0.00056 33.9 4.3 61 209-270 2-68 (313)
48 2ioy_A Periplasmic sugar-bindi 47.0 24 0.00081 32.2 5.4 59 209-268 2-66 (283)
49 3kjx_A Transcriptional regulat 46.6 17 0.00059 34.4 4.5 61 208-269 68-134 (344)
50 2h0a_A TTHA0807, transcription 46.6 21 0.00073 32.1 5.0 75 210-285 1-83 (276)
51 1e2b_A Enzyme IIB-cellobiose; 46.0 36 0.0012 27.2 5.6 72 213-291 7-86 (106)
52 1bvy_F Protein (cytochrome P45 45.9 37 0.0013 30.1 6.3 60 205-270 18-77 (191)
53 1dbq_A Purine repressor; trans 44.3 41 0.0014 30.4 6.6 64 206-270 5-74 (289)
54 3hcw_A Maltose operon transcri 43.2 10 0.00035 35.1 2.2 63 205-269 4-78 (295)
55 1tvm_A PTS system, galactitol- 43.1 84 0.0029 25.2 7.5 63 213-285 25-90 (113)
56 1tjy_A Sugar transport protein 42.6 18 0.00062 33.9 3.9 64 208-271 3-72 (316)
57 3bbl_A Regulatory protein of L 41.8 30 0.001 31.6 5.2 61 207-269 3-74 (287)
58 2dri_A D-ribose-binding protei 41.5 34 0.0012 30.9 5.5 59 209-268 2-66 (271)
59 3ors_A N5-carboxyaminoimidazol 41.2 69 0.0024 28.0 7.0 75 207-284 2-85 (163)
60 3gbv_A Putative LACI-family tr 40.8 50 0.0017 29.9 6.6 66 205-270 5-80 (304)
61 3oow_A Phosphoribosylaminoimid 40.6 69 0.0024 28.1 6.9 72 210-284 7-87 (166)
62 1jye_A Lactose operon represso 40.6 42 0.0014 31.8 6.2 62 206-267 59-126 (349)
63 3rot_A ABC sugar transporter, 40.4 16 0.00055 33.7 3.1 63 209-271 4-73 (297)
64 4grd_A N5-CAIR mutase, phospho 40.2 71 0.0024 28.2 6.9 75 207-284 11-94 (173)
65 3kuu_A Phosphoribosylaminoimid 39.6 70 0.0024 28.3 6.8 73 209-284 13-94 (174)
66 1u11_A PURE (N5-carboxyaminoim 39.6 45 0.0015 29.7 5.6 80 202-284 15-103 (182)
67 3end_A Light-independent proto 38.9 33 0.0011 32.1 5.0 53 193-247 26-78 (307)
68 4fe7_A Xylose operon regulator 38.7 24 0.00081 34.6 4.1 59 205-265 22-82 (412)
69 2o20_A Catabolite control prot 38.6 23 0.00079 33.3 3.9 62 206-268 61-128 (332)
70 2i0f_A 6,7-dimethyl-8-ribityll 38.6 41 0.0014 29.2 5.1 61 209-269 13-83 (157)
71 3huu_A Transcription regulator 38.5 16 0.00055 33.8 2.8 63 206-270 20-94 (305)
72 2q9u_A A-type flavoprotein; fl 38.4 57 0.0019 31.8 6.9 62 208-271 256-318 (414)
73 3lp6_A Phosphoribosylaminoimid 38.3 63 0.0022 28.6 6.3 74 208-284 7-89 (174)
74 2bru_C NAD(P) transhydrogenase 37.7 33 0.0011 30.4 4.3 64 202-269 24-115 (186)
75 8abp_A L-arabinose-binding pro 37.4 25 0.00086 32.2 3.9 60 209-270 3-68 (306)
76 1qpz_A PURA, protein (purine n 37.1 65 0.0022 30.2 6.9 63 206-269 56-124 (340)
77 3dbi_A Sugar-binding transcrip 36.6 44 0.0015 31.3 5.6 63 206-269 59-129 (338)
78 2dgd_A 223AA long hypothetical 36.6 1.6E+02 0.0056 26.0 9.3 80 206-291 106-207 (223)
79 3ksm_A ABC-type sugar transpor 36.1 33 0.0011 30.7 4.4 60 210-269 2-69 (276)
80 2fvy_A D-galactose-binding per 36.0 25 0.00085 32.2 3.6 62 208-270 2-70 (309)
81 2kyr_A Fructose-like phosphotr 35.9 87 0.003 25.5 6.4 72 208-284 6-84 (111)
82 3bil_A Probable LACI-family tr 35.6 48 0.0016 31.4 5.7 62 207-269 65-132 (348)
83 1czn_A Flavodoxin; FMN binding 35.3 51 0.0018 27.7 5.3 55 210-270 2-56 (169)
84 4b4k_A N5-carboxyaminoimidazol 35.2 88 0.003 27.8 6.8 73 209-284 23-104 (181)
85 3d8u_A PURR transcriptional re 35.2 54 0.0018 29.3 5.8 60 208-269 3-69 (275)
86 3s40_A Diacylglycerol kinase; 34.3 1.2E+02 0.0042 28.4 8.3 36 210-245 10-46 (304)
87 2jvf_A De novo protein M7; tet 34.1 1.1E+02 0.0039 22.9 6.2 53 195-247 31-86 (96)
88 3d02_A Putative LACI-type tran 33.9 40 0.0014 30.7 4.7 61 208-268 4-70 (303)
89 2i14_A Nicotinate-nucleotide p 33.9 87 0.003 31.1 7.4 58 208-265 233-294 (395)
90 2rgy_A Transcriptional regulat 33.6 56 0.0019 29.7 5.7 63 206-269 6-77 (290)
91 3h75_A Periplasmic sugar-bindi 33.3 56 0.0019 30.7 5.7 59 208-267 3-70 (350)
92 2hsg_A Glucose-resistance amyl 33.0 54 0.0019 30.6 5.6 63 206-269 58-126 (332)
93 2fsv_C NAD(P) transhydrogenase 32.6 48 0.0016 29.9 4.6 65 202-270 40-132 (203)
94 1pno_A NAD(P) transhydrogenase 32.5 38 0.0013 29.9 3.9 65 202-270 17-109 (180)
95 1hqk_A 6,7-dimethyl-8-ribityll 32.0 84 0.0029 27.1 6.0 60 210-269 14-81 (154)
96 2ark_A Flavodoxin; FMN, struct 31.7 76 0.0026 27.3 5.9 57 210-271 6-63 (188)
97 1d4o_A NADP(H) transhydrogenas 31.7 42 0.0014 29.7 4.0 63 203-269 17-107 (184)
98 2bpo_A CPR, P450R, NADPH-cytoc 31.2 1E+02 0.0036 32.8 7.9 56 208-266 49-105 (682)
99 2a5l_A Trp repressor binding p 31.0 1.4E+02 0.0047 25.5 7.6 39 209-248 6-44 (200)
100 1ykg_A SIR-FP, sulfite reducta 30.7 70 0.0024 27.1 5.4 55 210-269 11-65 (167)
101 2qu7_A Putative transcriptiona 30.6 36 0.0012 30.9 3.8 62 206-269 6-73 (288)
102 2ohh_A Type A flavoprotein FPR 30.3 95 0.0033 29.9 7.0 62 208-271 256-318 (404)
103 1obo_A Flavodoxin; electron tr 29.4 85 0.0029 26.3 5.7 55 209-270 2-56 (169)
104 2i1o_A Nicotinate phosphoribos 29.1 55 0.0019 32.7 5.0 57 209-265 236-297 (398)
105 1o4v_A Phosphoribosylaminoimid 28.9 1.4E+02 0.0048 26.5 7.0 74 208-284 13-95 (183)
106 2rjo_A Twin-arginine transloca 28.9 53 0.0018 30.6 4.7 64 206-270 3-74 (332)
107 2qh8_A Uncharacterized protein 28.7 33 0.0011 31.8 3.2 62 207-269 7-79 (302)
108 3ox7_P MH027; urokinase-type p 28.0 14 0.00049 21.0 0.2 9 389-397 8-16 (23)
109 3rg8_A Phosphoribosylaminoimid 27.4 1.4E+02 0.0046 26.0 6.5 73 209-284 3-85 (159)
110 1req_B Methylmalonyl-COA mutas 27.3 29 0.001 36.9 2.7 66 201-272 552-624 (637)
111 2vk2_A YTFQ, ABC transporter p 27.0 44 0.0015 30.8 3.6 61 209-270 3-69 (306)
112 1rvv_A Riboflavin synthase; tr 26.7 92 0.0031 26.9 5.3 60 210-269 14-81 (154)
113 1djl_A Transhydrogenase DIII; 26.6 51 0.0017 29.8 3.7 64 202-269 39-130 (207)
114 1e5d_A Rubredoxin\:oxygen oxid 25.9 1.7E+02 0.0056 28.1 7.8 62 208-271 252-314 (402)
115 3qe2_A CPR, P450R, NADPH--cyto 25.7 41 0.0014 35.5 3.5 61 207-269 17-79 (618)
116 2vzf_A NADH-dependent FMN redu 25.0 1.2E+02 0.004 26.3 6.0 42 210-251 4-47 (197)
117 2qv7_A Diacylglycerol kinase D 24.8 1.8E+02 0.0062 27.6 7.8 35 210-244 26-61 (337)
118 2bon_A Lipid kinase; DAG kinas 24.5 1.2E+02 0.0042 28.8 6.5 37 209-247 30-66 (332)
119 2zki_A 199AA long hypothetical 24.3 1.6E+02 0.0056 25.1 6.8 39 209-249 5-43 (199)
120 1c2y_A Protein (lumazine synth 23.6 86 0.0029 27.1 4.6 60 210-269 15-81 (156)
121 3dma_A Exopolyphosphatase-rela 23.6 2.1E+02 0.0071 27.6 8.0 71 201-273 14-105 (343)
122 3czx_A Putative N-acetylmuramo 23.3 81 0.0028 27.6 4.5 46 223-270 30-81 (182)
123 3lft_A Uncharacterized protein 23.2 45 0.0015 30.6 2.9 59 209-269 3-72 (295)
124 2lti_A Astexin1; sidechain-TO- 23.0 26 0.00089 20.4 0.7 10 392-401 4-13 (26)
125 1o4u_A Type II quinolic acid p 22.7 1.1E+02 0.0037 29.1 5.5 64 204-271 208-273 (285)
126 1di0_A Lumazine synthase; tran 22.6 1.1E+02 0.0036 26.6 5.0 60 210-269 12-79 (158)
127 3lkv_A Uncharacterized conserv 22.1 1.7E+02 0.0058 27.0 6.8 111 195-310 126-246 (302)
128 3rht_A (gatase1)-like protein; 21.8 87 0.003 29.3 4.6 48 220-270 12-61 (259)
129 1ydg_A Trp repressor binding p 21.8 79 0.0027 27.6 4.2 41 208-249 6-46 (211)
130 1xmp_A PURE, phosphoribosylami 21.8 1.3E+02 0.0044 26.4 5.3 73 209-284 12-93 (170)
131 1ag9_A Flavodoxin; electron tr 21.3 1.4E+02 0.0048 25.3 5.6 54 210-270 2-55 (175)
132 3nq4_A 6,7-dimethyl-8-ribityll 20.9 1.5E+02 0.0052 25.6 5.6 61 209-269 13-82 (156)
133 3h5t_A Transcriptional regulat 20.8 71 0.0024 30.2 3.9 61 206-269 66-138 (366)
134 1wpn_A Manganese-dependent ino 20.7 1.9E+02 0.0064 24.9 6.4 44 229-272 22-80 (188)
135 2bfw_A GLGA glycogen synthase; 20.7 63 0.0021 27.3 3.2 53 210-269 71-125 (200)
136 1ejb_A Lumazine synthase; anal 20.3 1.5E+02 0.005 26.0 5.4 60 210-269 18-90 (168)
137 3aek_A Light-independent proto 20.1 1.5E+02 0.0051 29.6 6.3 71 208-285 183-255 (437)
No 1
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=100.00 E-value=4.9e-80 Score=621.56 Aligned_cols=272 Identities=22% Similarity=0.341 Sum_probs=243.6
Q ss_pred CCCCcccccccChhhhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhh
Q 014283 1 MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHA 80 (427)
Q Consensus 1 LaDtsYGsCCVDevaA~hv~aD~iVHyGhaCls~~~~lpv~YVf~~~~ld~~~~~~~l~~~~~~~~~~v~l~~dvqy~~~ 80 (427)
|||||||||||||++|+|++||+|||||||||++++++||+|||++.++|++++++.+.+.+.+..++|+|++|+||.|+
T Consensus 87 lgDttYGACCVDe~aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~ 166 (378)
T 3lzd_A 87 HGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQ 166 (378)
T ss_dssp ECSCCCCTTSCCHHHHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGG
T ss_pred EcCCcccCcccCHHHHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999998877655679999999999999
Q ss_pred hHHHHHHHHhhccCCCCCcceeeeeecceeeeecCCCCCCCCCCCCCCcccccccCcccccCCccCccceEEEEEcCCcc
Q 014283 81 IPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS 160 (427)
Q Consensus 81 l~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~i~~Ig~~~~ 160 (427)
++++++.|++.|+ ++.+ .+....+.++|+++||++.... .+.+ .++|||+|.|
T Consensus 167 l~~~~~~L~~~g~--------~v~i--------~~~~~~~~~~gqvLGC~~~~~~---------~~~d--~~lyvG~g~F 219 (378)
T 3lzd_A 167 LKEAKEFLESEGF--------EVSI--------GRGDSRISWPGQVLGCNYSVAK---------VRGE--GILFIGSGIF 219 (378)
T ss_dssp HHHHHHHHHHTTC--------EEEC--------CCCCTTCSSTTBCBTTBCGGGC---------SSCS--EEEEESSSSH
T ss_pred HHHHHHHHHHcCC--------eEEe--------cCCCCCCCCCCccccccCCCcc---------cCCc--eEEEEcCCch
Confidence 9999999998764 2222 1222334568999999876431 1223 6789999999
Q ss_pred hhhHHHhhcCCceEEEecCCCCceecccCcHHHHHHHHHHHHHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCc
Q 014283 161 AFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKK 240 (427)
Q Consensus 161 ~l~~l~l~~~~~~v~~yDP~~~~~~~~~~~~~r~L~rRy~~I~ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK 240 (427)
|+++++|+ +.+++|+|||+++++... +.+|+|||||++|+|||+|++|||||||||+|+|++++++|+++|+++|||
T Consensus 220 H~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk 296 (378)
T 3lzd_A 220 HPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGRE 296 (378)
T ss_dssp HHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHHHHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHHHHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCc
Confidence 99999999 899999999999987654 389999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHcCCCCCCEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCccccceeecc
Q 014283 241 AYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 307 (427)
Q Consensus 241 ~y~~~vgkln~aKLaNF~eiD~fVlvaCPr~si~d~~~f~kPvlTP~El~~aL~~~~~w~g~y~~Df 307 (427)
+|+|+||||||+||+|| +||+||+|||||++|||+++|+||||||||++|||+.+. .|.+|+
T Consensus 297 ~y~i~vg~inp~KLanF-~iD~fV~vaCPrlsidd~~~F~KPvLTPyE~evAL~~~~----~y~~de 358 (378)
T 3lzd_A 297 ARLIVMNDVNYHKLEGF-PFEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLRE----EYEFDE 358 (378)
T ss_dssp EEEEEESSCCHHHHTTS-CCSEEEECSCTHHHHSCCSCCSSCEECHHHHHHHTTSCC----SCCCCC
T ss_pred EEEEEeCCCCHHHHhCC-CCCEEEEecCCCccccchhhCCCcccCHHHHHHHhCCCC----CCCCcc
Confidence 99999999999999999 699999999999999999999999999999999999854 566554
No 2
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=83.09 E-value=2.6 Score=38.16 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecCCCcccccccCCCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALLDSKEFLA 281 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaCPr~si~d~~~f~k 281 (427)
.++||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.++........++...
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~ 80 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS 80 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-CCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence 468999999888778889999999999999988665543 334433 2222 369999999875433222233445
Q ss_pred cccC
Q 014283 282 PVIT 285 (427)
Q Consensus 282 PvlT 285 (427)
|+|+
T Consensus 81 pvV~ 84 (255)
T 1byk_A 81 SLVL 84 (255)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7654
No 3
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=80.72 E-value=3.5 Score=37.98 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=54.8
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCcccccccC
Q 014283 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKE 278 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~si~d~~~ 278 (427)
.+..++||+|+..+.-..+..+++.+++.++++|.+..++.-..-++++- ..+ ..+|.+|+.+ +. +....+
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~~ 83 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNFH 83 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTCC
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHHh
Confidence 45578999999998888889999999999999999834444444455432 222 3699999987 32 333445
Q ss_pred CCCcccC
Q 014283 279 FLAPVIT 285 (427)
Q Consensus 279 f~kPvlT 285 (427)
...|+|+
T Consensus 84 ~~iPvV~ 90 (277)
T 3hs3_A 84 LNTPLVM 90 (277)
T ss_dssp CSSCEEE
T ss_pred CCCCEEE
Confidence 5677764
No 4
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=77.14 E-value=7.4 Score=36.06 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=57.3
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEE---------cCCCCHHHHc--------CCCCCCEEEEecC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV---------MGKPNPAKLA--------NFPECDVFINVSC 268 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~---------vgkln~aKLa--------NF~eiD~fVlvaC 268 (427)
..+++|||| +| +...+-+.+++.++++|..+.... +|+++++.+. .-+++|+.|+ +|
T Consensus 115 ~g~~rvgll-tp----y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL-~C 188 (240)
T 3ixl_A 115 LGVRRVALA-TA----YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILL-SS 188 (240)
T ss_dssp TTCSEEEEE-ES----SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEE-EC
T ss_pred hCCCEEEEE-eC----ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEE-eC
Confidence 467999987 45 345667888999999999876543 3455555442 3357888665 59
Q ss_pred CCccccc-----ccCCCCcccCHHHHHH
Q 014283 269 AQTALLD-----SKEFLAPVITPFEAML 291 (427)
Q Consensus 269 Pr~si~d-----~~~f~kPvlTP~El~~ 291 (427)
=+.+..+ .+++-+||+++-++.+
T Consensus 189 T~l~~l~~i~~le~~lg~PVids~~a~~ 216 (240)
T 3ixl_A 189 GGLLTLDAIPEVERRLGVPVVSSSPAGF 216 (240)
T ss_dssp TTSCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred CCCchhhhHHHHHHHhCCCEEeHHHHHH
Confidence 9998764 5678899999987754
No 5
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=75.29 E-value=3.7 Score=37.67 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=49.2
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
+..++||+|+..+.-..+..+++.+++.++++|....++..+ -++++..++ .+|.+|+.++..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~-~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGK-KSHLFIPEK-MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEEST-TTTTCCCTT-TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHhhc-cccEEEEecCCC
Confidence 345789999998887888899999999999999887665543 345555555 899999987643
No 6
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=75.11 E-value=3.6 Score=38.41 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=53.1
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCCEEEEecCCCcc---cccc
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQTA---LLDS 276 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK-------LaNF~eiD~fVlvaCPr~s---i~d~ 276 (427)
..++||+|+..+.-..+..+++.+++.++++|.+..++..+. ++++ |.+ ..+|.+|+.++.... +...
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~~l 91 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA-PPRGTQQLSRLVSE-GRVDGVLLQRREDFDDDMLAAV 91 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS-TTHHHHHHHHHHHS-CSSSEEEECCCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHh-CCCcEEEEecCCCCcHHHHHHH
Confidence 457899999999888899999999999999999988776654 3222 222 369999998875442 2223
Q ss_pred cCCCCcccC
Q 014283 277 KEFLAPVIT 285 (427)
Q Consensus 277 ~~f~kPvlT 285 (427)
.+ ..|||+
T Consensus 92 ~~-~iPvV~ 99 (303)
T 3kke_A 92 LE-GVPAVT 99 (303)
T ss_dssp HT-TSCEEE
T ss_pred hC-CCCEEE
Confidence 34 566653
No 7
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=74.45 E-value=12 Score=34.40 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhcCC-eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEec
Q 014283 191 PLKILKRRYYLVEKAKDAN-IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVS 267 (427)
Q Consensus 191 ~~r~L~rRy~~I~ka~~A~-~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlva 267 (427)
..+..+-.-.+|.++++.+ .+.|+.||..| +...++++|.+.+ ++|.++-++.+++.+++.|.+ .+.+|++.
T Consensus 22 ~~~av~~~~~l~~~~~~~~~kv~IlYgS~tG-nte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~---~~~vI~~t 94 (219)
T 3hr4_A 22 LVKAVLFACMLMRKTMASRVRVTILFATETG-KSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEE---ERLLLVVT 94 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECSSS-HHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGT---CSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhcc---CCeEEEEE
Confidence 4566666777999999875 89999999885 5678889998887 478888888899988887754 35555443
No 8
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=73.98 E-value=3.9 Score=37.74 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=54.8
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCcc--cccc
Q 014283 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTA--LLDS 276 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~s--i~d~ 276 (427)
.+..++||+|+..+.-..+..+++.+++.++++|.+..++..+. ++++. ..+ ..+|.+|+.+..... +...
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 83 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEGEHDYLRTE 83 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHS
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHh
Confidence 45678999999998877888999999999999999887766543 44432 112 369999998775411 1123
Q ss_pred cCCCCccc
Q 014283 277 KEFLAPVI 284 (427)
Q Consensus 277 ~~f~kPvl 284 (427)
.+-..|+|
T Consensus 84 ~~~~iPvV 91 (291)
T 3egc_A 84 LPKTFPIV 91 (291)
T ss_dssp SCTTSCEE
T ss_pred hccCCCEE
Confidence 34566766
No 9
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=73.50 E-value=2.2 Score=39.17 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=44.9
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEec
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVS 267 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlva 267 (427)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++. ..+ ..+|.+|+.+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 4567999999998888889999999999999999987665544 44432 112 3699999977
No 10
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.49 E-value=4.1 Score=37.00 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=47.6
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCCEEEEecCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 269 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa----NF--~eiD~fVlvaCP 269 (427)
.++||+|+....-..+..+++.+++.++++|.+..++..+. ++++.. .+ ..+|.+|+.++.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD-QPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 57899999999888889999999999999999887776553 544321 11 369999987765
No 11
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=71.06 E-value=5.8 Score=37.79 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=54.4
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCcccccccCCC
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEFL 280 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~si~d~~~f~ 280 (427)
..++||+|+....-..+..+++.+.+.++++|....++..+. +++. ..+ ..+|.+|+.+. +....+..
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~----~~~~~~~~ 136 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--VQAQDVVMESLISIQAAGIIHVPV----VGSIAPEG 136 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--HHHHHHHHHHHHHHTCSEEEECCC----TTCCC-CC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHHHhCCCCEEEEcch----HHHHhhCC
Confidence 468999999998878888999999999999999988887776 4432 122 26999999877 44444556
Q ss_pred CcccC
Q 014283 281 APVIT 285 (427)
Q Consensus 281 kPvlT 285 (427)
.|+|+
T Consensus 137 iPvV~ 141 (333)
T 3jvd_A 137 IPMVQ 141 (333)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 77764
No 12
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=69.54 E-value=5.7 Score=36.43 Aligned_cols=80 Identities=8% Similarity=-0.051 Sum_probs=51.9
Q ss_pred hcCCeEEEEEcCCc--ccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHH----cCC--CCCCEEEEecCCCccc---
Q 014283 206 KDANIIGVLVGTLG--VAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKL----ANF--PECDVFINVSCAQTAL--- 273 (427)
Q Consensus 206 ~~A~~iGIlvgTl~--~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKL----aNF--~eiD~fVlvaCPr~si--- 273 (427)
+..++||+|+...+ -..+..+++.+++.++++|.+..++..+ +-++++. ..+ ..+|.+|+.++....+
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 34678999998877 6778899999999999999776554442 3444432 122 3699999887754431
Q ss_pred -ccccCCCCcccC
Q 014283 274 -LDSKEFLAPVIT 285 (427)
Q Consensus 274 -~d~~~f~kPvlT 285 (427)
....+...|+|+
T Consensus 83 ~~~~~~~~iPvV~ 95 (289)
T 3brs_A 83 AKEIKDAGIKLIV 95 (289)
T ss_dssp HTTTGGGTCEEEE
T ss_pred HHHHHHCCCcEEE
Confidence 122334567664
No 13
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=67.44 E-value=9.6 Score=31.30 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=43.9
Q ss_pred EEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 211 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 211 iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
|.|+-+|..| +...+++.|.+.++++|..+-++-+.+.++.+|.+ .|.+ +++||-
T Consensus 1 i~I~Y~S~tG-nT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~d~i-iig~pt 55 (138)
T 5nul_A 1 MKIVYWSGTG-NTEKMAELIAKGIIESGKDVNTINVSDVNIDELLN---EDIL-ILGCSA 55 (138)
T ss_dssp CEEEEECSSS-HHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTT---CSEE-EEEECC
T ss_pred CEEEEECCCc-hHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhh---CCEE-EEEcCc
Confidence 4578888764 67899999999999999999999999999988755 4654 555663
No 14
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=67.23 E-value=4.7 Score=37.08 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=47.5
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCc
Q 014283 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 271 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~ 271 (427)
.+..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++. .++ ..+|.+|+.++...
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ-NSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 3456899999999887788899999999999999987766544 344322 222 36999999877544
No 15
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=67.17 E-value=5.8 Score=37.23 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=49.5
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCc
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 271 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~ 271 (427)
+.++||+|+..+.-..+..+++.+++.++++|.+..++. ..-++++- .++ ..+|..|+.++...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 568999999999888899999999999999999876665 55555432 222 26999999877643
No 16
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=67.05 E-value=6.8 Score=35.78 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=47.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH-------HHcCCCCCCEEEEecCCCc
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-------KLANFPECDVFINVSCAQT 271 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~a-------KLaNF~eiD~fVlvaCPr~ 271 (427)
+..++||+|+..+.-..+..+++.+++.++++|.+..++... +++ .|.+ ..+|.+| +++...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSALS-MRPDGII-IAQDIP 71 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHHT-TCCSEEE-EESCC-
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHHh-CCCCEEE-ecCCCC
Confidence 456899999999988889999999999999999988777766 433 2322 3799999 776543
No 17
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=65.96 E-value=5.2 Score=36.72 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=47.2
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
++||+|+..+.-..+..+++.+++.++++|.+..++... -++++. ..+ ..+|.+|+.++.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-NNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999988889999999999999999987766554 344432 112 369999998764
No 18
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=65.03 E-value=6.7 Score=36.38 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=54.9
Q ss_pred HhcCCeEEEEEcCCcccCcH-HHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCccc-ccc
Q 014283 205 AKDANIIGVLVGTLGVAGYL-HMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTAL-LDS 276 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~-~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~si-~d~ 276 (427)
.+..++||+|+..+.-..+. .+++.+++.++++|....++..+ -++++- ..+ ..+|.+|+.+...... ...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~ 88 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG-GSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPES 88 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCC
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEecCCccHHHHHH
Confidence 34578999999999877888 99999999999999987766543 344332 111 2699999987654332 223
Q ss_pred cCCCCcccC
Q 014283 277 KEFLAPVIT 285 (427)
Q Consensus 277 ~~f~kPvlT 285 (427)
.+...|+|+
T Consensus 89 ~~~~iPvV~ 97 (301)
T 3miz_A 89 GDVSIPTVM 97 (301)
T ss_dssp TTCCCCEEE
T ss_pred HhCCCCEEE
Confidence 344567664
No 19
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=64.85 E-value=6.4 Score=36.44 Aligned_cols=64 Identities=2% Similarity=-0.124 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcC----C--CCCCEEEEecCCCc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLAN----F--PECDVFINVSCAQT 271 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaN----F--~eiD~fVlvaCPr~ 271 (427)
.++||+|+...+-..+..+++.+++.++++|.+..++....-++++..+ + ..+|.+|+.++...
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 73 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV 73 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 4789999999988888899999999999999988775666666654321 1 26999999877654
No 20
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.24 E-value=14 Score=34.43 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCccc----cccc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTAL----LDSK 277 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~si----~d~~ 277 (427)
.++||+|+..+....+..+++-+++.++++|.+..++.. .-++++- .++ ..+|.+|+.+.....+ ....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 368999999998899999999999999999988766654 4454432 222 3699999988765532 2233
Q ss_pred CCCCcccC
Q 014283 278 EFLAPVIT 285 (427)
Q Consensus 278 ~f~kPvlT 285 (427)
+-..|||+
T Consensus 81 ~~~iPvV~ 88 (313)
T 3m9w_A 81 QEGIKVLA 88 (313)
T ss_dssp TTTCEEEE
T ss_pred HCCCeEEE
Confidence 44566654
No 21
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=62.23 E-value=15 Score=30.53 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=44.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
.++.|+.+|..+ +...+++.|.+.+++.|.++-++-+.+.++..|.. +.|.+ +++||-
T Consensus 2 ~ki~I~y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~--~~d~i-i~g~pt 59 (148)
T 3f6r_A 2 SKVLIVFGSSTG-NTESIAQKLEELIAAGGHEVTLLNAADASAENLAD--GYDAV-LFGCSA 59 (148)
T ss_dssp CEEEEEEECSSS-HHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT--TCSEE-EEEECE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc--cCCEE-EEEecc
Confidence 367899999865 56899999999999999988888888887766541 45654 555664
No 22
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=61.50 E-value=15 Score=33.72 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=53.7
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecCCCcc--c-ccc
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTA--L-LDS 276 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaCPr~s--i-~d~ 276 (427)
+..++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++.... + ...
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~ 96 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW 96 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH
Confidence 45789999999887777889999999999999988765543 334443 2222 369999998765322 2 223
Q ss_pred cCCCCcccC
Q 014283 277 KEFLAPVIT 285 (427)
Q Consensus 277 ~~f~kPvlT 285 (427)
++-..|+|+
T Consensus 97 ~~~~iPvV~ 105 (293)
T 2iks_A 97 ANDPFPIVA 105 (293)
T ss_dssp TTSSSCEEE
T ss_pred HhCCCCEEE
Confidence 334567664
No 23
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=61.17 E-value=13 Score=31.86 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC-CHHHHc-CCCCCCEEEEecCCCc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKLA-NFPECDVFINVSCAQT 271 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkl-n~aKLa-NF~eiD~fVlvaCPr~ 271 (427)
.+.+.|+-+|.. -+...+++.|.+-+++.|..+-++-+.+. .+..+. .+.+.|+ |+++||--
T Consensus 4 ~~kv~IvY~S~~-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~-ii~Gspty 67 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTG-LVIGMSPA 67 (159)
T ss_dssp CCEEEEEECTTS-TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEE-EEEECCBT
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCE-EEEEcCcC
Confidence 457899999986 56889999999999999999889999998 887764 3445564 56677743
No 24
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=60.85 E-value=29 Score=32.55 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=55.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC---------CCCHHHHc------CCCCCCEEEEecCCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG---------KPNPAKLA------NFPECDVFINVSCAQ 270 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg---------kln~aKLa------NF~eiD~fVlvaCPr 270 (427)
..+++||||. +.. ..+-..+++.+++.|..+..+.-. +++++.+. .-+++|+.|+=||=+
T Consensus 144 ~g~~rvgvlt-p~~----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~ 218 (273)
T 2xed_A 144 LDAQRVALVT-PYM----RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQ 218 (273)
T ss_dssp TTCCEEEEEE-CSC----HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSS
T ss_pred cCCCeEEEEc-CCh----hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCC
Confidence 4578999993 422 334458888999999987554332 34555442 224789988887999
Q ss_pred ccccc-----ccCCCCcccCHHHHHH
Q 014283 271 TALLD-----SKEFLAPVITPFEAML 291 (427)
Q Consensus 271 ~si~d-----~~~f~kPvlTP~El~~ 291 (427)
.+..+ .+++.+|||++-.+.+
T Consensus 219 l~~~~~~~~le~~lg~PVids~~a~a 244 (273)
T 2xed_A 219 MPSLPLVETAEREFGIPVLSAATAGA 244 (273)
T ss_dssp SCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred cchHHhHHHHHHHhCCCEEcHHHHHH
Confidence 99742 3457899999988755
No 25
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=60.09 E-value=8.3 Score=35.49 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=47.2
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH-------HHcCCCCCCEEEEecCCCc--ccccc
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-------KLANFPECDVFINVSCAQT--ALLDS 276 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~a-------KLaNF~eiD~fVlvaCPr~--si~d~ 276 (427)
+..++||+|+....-..+..+++.+++.++++|.+..++.-..-+++ .|.. ..+|.+|+.++... .+...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~l 84 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE-RPVMGILLLSIALTDDNLQLL 84 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHS-SCCSEEEEESCC----CHHHH
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCCHHHHHHH
Confidence 45679999999888778889999999999999987655412222332 2322 36999998876432 12222
Q ss_pred cCCCCcccC
Q 014283 277 KEFLAPVIT 285 (427)
Q Consensus 277 ~~f~kPvlT 285 (427)
++...|+|+
T Consensus 85 ~~~~iPvV~ 93 (290)
T 3clk_A 85 QSSDVPYCF 93 (290)
T ss_dssp HCC--CEEE
T ss_pred HhCCCCEEE
Confidence 334557654
No 26
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=58.92 E-value=5.4 Score=36.89 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=44.1
Q ss_pred HHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 204 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 204 ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
+-+..++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.+..
T Consensus 12 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 12 SSKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-DQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ----CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ccCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3456789999998877777889999999999999987655543 3344332 122 368999887753
No 27
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=58.72 E-value=32 Score=27.61 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=43.8
Q ss_pred EEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 211 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 211 iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
+.|+.+|.. -+...+++.+.+.+++.|.++-++-+.+..+++|.+. |.+ +++||-
T Consensus 2 i~iiy~S~t-GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~---d~v-i~g~p~ 56 (137)
T 2fz5_A 2 VEIVYWSGT-GNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASK---DVI-LLGCPA 56 (137)
T ss_dssp EEEEECCSS-SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTC---SEE-EEECCC
T ss_pred EEEEEECCC-ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcC---CEE-EEEccc
Confidence 568888876 4567899999999999999998999999888887654 654 556774
No 28
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.44 E-value=11 Score=34.25 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=54.9
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecCCCcccc-cccC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALL-DSKE 278 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaCPr~si~-d~~~ 278 (427)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++ +.++ ..+|.+|+.++...... ...+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~ 83 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA-DIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILH 83 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT-CHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHH
Confidence 4578999999998877888999999999999999877766553 3432 1122 37999999887651111 2233
Q ss_pred CCCcccC
Q 014283 279 FLAPVIT 285 (427)
Q Consensus 279 f~kPvlT 285 (427)
...|+|+
T Consensus 84 ~~iPvV~ 90 (276)
T 3jy6_A 84 QQMPVVS 90 (276)
T ss_dssp TSSCEEE
T ss_pred CCCCEEE
Confidence 4556653
No 29
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=58.08 E-value=9 Score=35.11 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=46.1
Q ss_pred HhcCCeEEEEEc-CCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC-CC-H-HHHcCC--CCCCEEEEecCCC
Q 014283 205 AKDANIIGVLVG-TLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PN-P-AKLANF--PECDVFINVSCAQ 270 (427)
Q Consensus 205 a~~A~~iGIlvg-Tl~~q~~~~~i~~l~~li~~~GKK~y~~~vgk-ln-~-aKLaNF--~eiD~fVlvaCPr 270 (427)
.+..++||+|+. ...-..+..+++.+++.++++|.+..++..+. .. . +-+..+ ..+|.+|+.+...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 79 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN 79 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc
Confidence 455789999998 67777888999999999999999887665432 11 1 112222 2699999987643
No 30
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=57.65 E-value=35 Score=27.22 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=46.1
Q ss_pred EEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCCccc--ccc----cCCCCcc--c
Q 014283 213 VLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTAL--LDS----KEFLAPV--I 284 (427)
Q Consensus 213 IlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr~si--~d~----~~f~kPv--l 284 (427)
++++.-|.... -++++|++.+++.|...-+-..+--..... ..++|+++.. |+... .+. .++.+|| |
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~--~~~~D~Ii~t--~~l~~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEV--VDRFDVVLLA--PQSRFNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHH--TTTCSEEEEC--SCCSSHHHHHHHHHHHHTCCEEEC
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhh--cCCCCEEEEC--CccHHHHHHHHHHhcccCCCEEEE
Confidence 67777787777 888999999999998644333333333322 3568855443 55442 111 1356888 9
Q ss_pred CHHHHH
Q 014283 285 TPFEAM 290 (427)
Q Consensus 285 TP~El~ 290 (427)
+|..+.
T Consensus 83 ~~~~y~ 88 (109)
T 2l2q_A 83 NTIDYG 88 (109)
T ss_dssp CHHHHH
T ss_pred ChHHhc
Confidence 997774
No 31
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=57.27 E-value=9 Score=35.47 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred hcCCeEEEEEc----CCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-HHHH-cCC--CCCCEEEEecCCC
Q 014283 206 KDANIIGVLVG----TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-PAKL-ANF--PECDVFINVSCAQ 270 (427)
Q Consensus 206 ~~A~~iGIlvg----Tl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln-~aKL-aNF--~eiD~fVlvaCPr 270 (427)
+..++||+|+. .+.-..+..+++.+++.++++|....++..+... ...+ ..+ ..+|.+|+.+...
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 45789999998 7777778899999999999999998888776421 1112 111 3699999987754
No 32
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=56.36 E-value=15 Score=33.73 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=49.2
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC-CCHHHHc----CC--CCCCEEEEecCCCc
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PNPAKLA----NF--PECDVFINVSCAQT 271 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgk-ln~aKLa----NF--~eiD~fVlvaCPr~ 271 (427)
...+||+|+..+.-..+..+++-+++.++++|.+..++..+. .++++-. ++ ..+|.+|+.++...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467999999999888888999999999999999877776664 2444321 11 26999999877655
No 33
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.26 E-value=5.9 Score=36.33 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=47.2
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
+..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++- .++ ..+|.+|+.++.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 456899999998887777889999999999999887766544 344332 222 268999988775
No 34
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=55.35 E-value=18 Score=30.94 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=47.1
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc-CCCCCCEEEEecCCCc
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 271 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa-NF~eiD~fVlvaCPr~ 271 (427)
++.|+-+|.. -+...+++.|.+.|++.|.++-++-+.+..+..+. .+.+.|. |+++||--
T Consensus 2 kv~IvY~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~-ii~Gspty 62 (161)
T 3hly_A 2 SVLIGYLSDY-GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARG-IVLGTPPS 62 (161)
T ss_dssp CEEEEECTTS-TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSE-EEEECCBS
T ss_pred EEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCE-EEEEcCCc
Confidence 3678889886 47889999999999999999889999999888764 3445676 45667743
No 35
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=55.13 E-value=23 Score=29.22 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=42.8
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCC-CCEEEEecCCCc
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE-CDVFINVSCAQT 271 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~e-iD~fVlvaCPr~ 271 (427)
.+.|+.+|..+ +...+++.|.+.+++.|.++-++-+.+.++.. +.+ .|.+|+ +||--
T Consensus 2 ki~iiy~S~~G-nt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~---l~~~~d~ii~-~~p~y 59 (147)
T 1f4p_A 2 KALIVYGSTTG-NTEYTAETIARELADAGYEVDSRDAASVEAGG---LFEGFDLVLL-GCSTW 59 (147)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT---TTTTCSEEEE-EECEE
T ss_pred eEEEEEECCcC-HHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH---hcCcCCEEEE-EeCCC
Confidence 46788898875 57899999999999999988888888776554 445 676554 56643
No 36
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=54.73 E-value=6.5 Score=36.10 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=45.8
Q ss_pred HhcCCeEEEEEcC-----CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCCEEEEecCC
Q 014283 205 AKDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCA 269 (427)
Q Consensus 205 a~~A~~iGIlvgT-----l~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK-------LaNF~eiD~fVlvaCP 269 (427)
.+..++||+|+.. +.-..+..+++.+++.++++|.+..++.. .-++++ |.+ ..+|.+|+.++.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~vdgiIi~~~~ 79 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTG-ETEEEIFNGVVKMVQG-RQIGGIILLYSR 79 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCC-CSHHHHHHHHHHHHHT-TCCCEEEESCCB
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHc-CCCCEEEEeCCC
Confidence 4567899999999 88888889999999999999987655433 333333 222 379999987654
No 37
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=54.01 E-value=18 Score=34.14 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=46.6
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCCEEEEecCCC
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 270 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa----NF--~eiD~fVlvaCPr 270 (427)
..++||+|+..+.-..+..+++-+++.++++|....++.. .-++++.. .+ ..+|.+|+.+...
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-HYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 4579999999998889999999999999999988765543 33443321 11 3699999987543
No 38
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=52.81 E-value=17 Score=34.75 Aligned_cols=79 Identities=10% Similarity=0.207 Sum_probs=52.0
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCCEEEEecCCCcc--ccccc
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQTA--LLDSK 277 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa----NF--~eiD~fVlvaCPr~s--i~d~~ 277 (427)
+..++||+|+..+.-..+..+++.+.+.++++|....++..+ -++++.. .+ ..+|.+|+.+..... +....
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~ 146 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA-YSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQ 146 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHH
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHH
Confidence 345799999999888888899999999999999987666543 3444321 11 269999997655332 11122
Q ss_pred CCCCcccC
Q 014283 278 EFLAPVIT 285 (427)
Q Consensus 278 ~f~kPvlT 285 (427)
+...|+|+
T Consensus 147 ~~~iPvV~ 154 (355)
T 3e3m_A 147 RASIPIVE 154 (355)
T ss_dssp HCCSCEEE
T ss_pred hCCCCEEE
Confidence 34556654
No 39
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=52.47 E-value=29 Score=30.57 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=57.8
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--c
Q 014283 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--D 275 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d 275 (427)
|+....+|||.|+. .-+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|=-...|- -
T Consensus 3 ~m~~~~V~IimgS~---SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv 79 (169)
T 3trh_A 3 AMNKIFVAILMGSD---SDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI 79 (169)
T ss_dssp ---CCEEEEEESCG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH
T ss_pred CCCCCcEEEEECcH---HhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH
Confidence 45567899999974 47889999999999999997776666 5679999888 56888888887777663 2
Q ss_pred ccCCCCccc
Q 014283 276 SKEFLAPVI 284 (427)
Q Consensus 276 ~~~f~kPvl 284 (427)
...-.+|||
T Consensus 80 A~~t~~PVI 88 (169)
T 3trh_A 80 AAHTLKPVI 88 (169)
T ss_dssp HHTCSSCEE
T ss_pred HhcCCCCEE
Confidence 334567775
No 40
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=52.11 E-value=14 Score=33.89 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc-CCCCHHH----HcCC--CCCCEEEEecCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAK----LANF--PECDVFINVSCA 269 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~v-gkln~aK----LaNF--~eiD~fVlvaCP 269 (427)
+++||+|+..+.-..+..+++.+.+.++++|....+... ..-++++ +.++ ..+|..|+.+..
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 69 (288)
T 1gud_A 1 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS 69 (288)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 578999999888788889999999999999987665542 3344433 2222 358999887653
No 41
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=51.87 E-value=14 Score=33.75 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.4
Q ss_pred cCCeEEEEEcC--CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 207 DANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 207 ~A~~iGIlvgT--l~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
...+||+|+.. +....+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.+..
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC-CTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 46799999988 7777888999999999999998765543 33454432 222 369999987763
No 42
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=50.95 E-value=16 Score=33.43 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=43.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr 270 (427)
++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS-QNDTAKESAHFDAIIAAGYDAIIFNPTDA 69 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSCT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 57999998877777788999999999999987655443 3444432 111 3689988876643
No 43
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.53 E-value=35 Score=31.21 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=46.6
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-H----HHHcCCCCCCEEEEecCCCc
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-P----AKLANFPECDVFINVSCAQT 271 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln-~----aKLaNF~eiD~fVlvaCPr~ 271 (427)
+..++||+|+ .+.-..+..+++-+++.++++|.+..++..+.-. . ..|.+ ..+|.+|+.++...
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR-ERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT-TTEEEEEEETCCCC
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh-CCCCEEEEECCCCC
Confidence 4468999999 8877788899999999999999988777665421 1 22322 36999999887543
No 44
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=48.33 E-value=32 Score=31.34 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=45.5
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSC 268 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaC 268 (427)
+..++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-ESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45689999999887777889999999999999988765543 3344432 122 36999998765
No 45
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=48.07 E-value=41 Score=31.50 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=49.5
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCcccccccCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEF 279 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~si~d~~~f 279 (427)
+...+||+|+...+-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+| .+..... ....+-
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~-~~l~~~ 134 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE-DEYANI 134 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS-GGGTTC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH-HHHHhc
Confidence 45689999998887677889999999999999988765544 3344332 222 3699998 7654321 112233
Q ss_pred CCcccC
Q 014283 280 LAPVIT 285 (427)
Q Consensus 280 ~kPvlT 285 (427)
..|+|+
T Consensus 135 ~iPvV~ 140 (330)
T 3ctp_A 135 DIPVVA 140 (330)
T ss_dssp CSCEEE
T ss_pred CCCEEE
Confidence 456654
No 46
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=47.05 E-value=10 Score=34.86 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=42.9
Q ss_pred HhcCCeEEEEEcCCcc--cCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH---HHcC-C--CCCCEEEEecC
Q 014283 205 AKDANIIGVLVGTLGV--AGYLHMIHQMKELITKAGKKAYTLVMGKPNPA---KLAN-F--PECDVFINVSC 268 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~--q~~~~~i~~l~~li~~~GKK~y~~~vgkln~a---KLaN-F--~eiD~fVlvaC 268 (427)
.+..++||+|+..... ..+..+++.+++.++++|....++.... +++ .+.+ + ..+|.+|+.+.
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-AKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-GGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-chhHHHHHHHHHHcCCccEEEEecC
Confidence 3567899999998764 6678999999999999998766554432 111 1111 2 36999998754
No 47
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=46.99 E-value=16 Score=33.94 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=43.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCCEEEEecCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 270 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa----NF--~eiD~fVlvaCPr 270 (427)
.+||+|+...+- .+..+++-+++.+++.|.+..++....-++++.. .+ ..+|.+|+.++..
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 68 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP 68 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 378999988776 7778999999999999987655444455555421 11 3689998876644
No 48
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=46.98 E-value=24 Score=32.24 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=42.7
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 268 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaC 268 (427)
++||+++..+.-..+..+++.+++.++++|....+.. ..-++++ +.++ ..+|.+|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVED-SQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5899999988777788999999999999998865543 3344433 2222 36899988654
No 49
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.62 E-value=17 Score=34.39 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=45.9
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc----CC--CCCCEEEEecCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 269 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa----NF--~eiD~fVlvaCP 269 (427)
.++||+|+..+.-..+..+++.+++.++++|....+...+ -++++.. ++ ..+|.+|+.+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD-YLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT-TCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4689999999988888999999999999999887655443 3554321 11 369999997654
No 50
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=46.56 E-value=21 Score=32.15 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=46.3
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH----HHcCC--CCCCEEEEecCCCc-c-cccccCCCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA----KLANF--PECDVFINVSCAQT-A-LLDSKEFLA 281 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~a----KLaNF--~eiD~fVlvaCPr~-s-i~d~~~f~k 281 (427)
+||+|+..+.-..+..+++.+++.++++|.+..++.. .-+++ .+..+ ..+|.+|+.++... . +...++-..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~i 79 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI-LSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTER 79 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC-CSCCCCC---------CCCSEEEEESCCCC------CCSCSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCchhhHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCC
Confidence 5899998888777889999999999999977654332 22222 12222 26899998876432 1 222333456
Q ss_pred cccC
Q 014283 282 PVIT 285 (427)
Q Consensus 282 PvlT 285 (427)
|+|+
T Consensus 80 PvV~ 83 (276)
T 2h0a_A 80 PVVL 83 (276)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7764
No 51
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=46.01 E-value=36 Score=27.25 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc--CCCCHHHHcCCCCCCEEEEecCCCcccc--c----ccCCCCccc
Q 014283 213 VLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM--GKPNPAKLANFPECDVFINVSCAQTALL--D----SKEFLAPVI 284 (427)
Q Consensus 213 IlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~v--gkln~aKLaNF~eiD~fVlvaCPr~si~--d----~~~f~kPvl 284 (427)
++++.-|.... -+++++++.++++|..+-+..+ +++.. ++ .+.|++++. |+.... + ..++..|+|
T Consensus 7 ll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~~---~~~Dvil~~--pqv~~~~~~~~~~~~~~~v~vI 79 (106)
T 1e2b_A 7 YLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAGE-KG---QNADVVLLG--PQIAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_dssp EEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTTH-HH---HHCSEEEEC--TTSGGGHHHHHHHSSSSCCCBC
T ss_pred EEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHh-hc---cCCCEEEEc--cchhhhHHHHHHHhcCCCceEE
Confidence 34455455444 7999999999999998655543 34432 33 345866644 766632 2 124678889
Q ss_pred CHHHHHH
Q 014283 285 TPFEAML 291 (427)
Q Consensus 285 TP~El~~ 291 (427)
.|..+..
T Consensus 80 ~~~~yg~ 86 (106)
T 1e2b_A 80 DSLLYGK 86 (106)
T ss_dssp CHHHHTT
T ss_pred CHHHccC
Confidence 9887743
No 52
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=45.87 E-value=37 Score=30.06 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=42.9
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
....+.+.|+.+|..| +...++++|.+.|.+.|.++-++-+.+.. ..+.+.|.+ +++||=
T Consensus 18 ~~~~~kv~IvY~S~tG-nTe~~A~~ia~~l~~~g~~v~v~~l~~~~----~~l~~~d~v-i~g~~T 77 (191)
T 1bvy_F 18 NAHNTPLLVLYGSNMG-TAEGTARDLADIAMSKGFAPQVATLDSHA----GNLPREGAV-LIVTAS 77 (191)
T ss_dssp ---CCCEEEEEECSSS-HHHHHHHHHHHHHHTTTCCCEEEEGGGST----TCCCSSSEE-EEEECC
T ss_pred ccCCCeEEEEEECCCh-HHHHHHHHHHHHHHhCCCceEEeeHHHhh----hhhhhCCeE-EEEEee
Confidence 3455778999999874 57789999999999899988888887742 245555654 556663
No 53
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=44.28 E-value=41 Score=30.40 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=45.0
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr 270 (427)
+..++||+|+..+.-..+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.++..
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc-CCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 3457899999888777788999999999999998766543 33455442 222 3699999877653
No 54
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=43.22 E-value=10 Score=35.10 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred HhcCCeEEEEE-----cCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCCEEEEecCC
Q 014283 205 AKDANIIGVLV-----GTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCA 269 (427)
Q Consensus 205 a~~A~~iGIlv-----gTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK-------LaNF~eiD~fVlvaCP 269 (427)
.+..++||+|+ ..+.-..+..+++.+++.++++|.+..++..+ -++++ |.+ ..+|.+|+.+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~-~~vdGiI~~~~~ 78 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN-NMNDLMDEVYKMIKQ-RMVDAFILLYSK 78 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC-SHHHHHHHHHHHHHT-TCCSEEEESCCC
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC-CChHHHHHHHHHHHh-CCcCEEEEcCcc
Confidence 45578999999 55666678899999999999999876554433 22221 222 369999997654
No 55
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=43.09 E-value=84 Score=25.21 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=40.4
Q ss_pred EEEcCCcccCcHHHHHHHHHHHHHcCCcE--EEEEcCCCCHHHHcCCCCCCEEEEecCCCcccccccCC-CCcccC
Q 014283 213 VLVGTLGVAGYLHMIHQMKELITKAGKKA--YTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF-LAPVIT 285 (427)
Q Consensus 213 IlvgTl~~q~~~~~i~~l~~li~~~GKK~--y~~~vgkln~aKLaNF~eiD~fVlvaCPr~si~d~~~f-~kPvlT 285 (427)
++++.-|.....-+..+|++.+++.|... ....+.++.. .+.++|+++.+ |... .+| .+|++.
T Consensus 25 lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~~~DlIist--~~l~----~~~~~ipvi~ 90 (113)
T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMDGVHLICTT--ARVD----RSFGDIPLVH 90 (113)
T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STTSCSEEEES--SCCC----CCSTTCCEEC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccCCCCEEEEC--Cccc----cccCCCCEEE
Confidence 66777677767778999999999999864 3344444422 23568855544 3332 245 678765
No 56
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=42.58 E-value=18 Score=33.89 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCCc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 271 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr~ 271 (427)
+++||+++.+++-..+..+++.+++.+++.|.+..+....+-++++- .++ ..+|++|+.+....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~ 72 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD 72 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 47899999887777777888888888888886544322234555432 222 36899888766443
No 57
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=41.78 E-value=30 Score=31.63 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=43.5
Q ss_pred cCCeEEEEEcC-C---cccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCH-------HHHcCCCCCCEEEEecCC
Q 014283 207 DANIIGVLVGT-L---GVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP-------AKLANFPECDVFINVSCA 269 (427)
Q Consensus 207 ~A~~iGIlvgT-l---~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~-------aKLaNF~eiD~fVlvaCP 269 (427)
..++||+|+.. + .-..+..+++.+++.++++|.+..++..+ -++ ..|.+ ..+|.+|+.+..
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~-~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFS-EDRSQIDIYRDLIRS-GNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCC-SSTTCCHHHHHHHHT-TCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCC-CchHHHHHHHHHHHc-CCCCEEEEeecC
Confidence 46799999988 7 66778899999999999999875443322 222 22322 369999987754
No 58
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=41.48 E-value=34 Score=30.92 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=43.5
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 268 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaC 268 (427)
++||+++..+.-..+..+++.+++.++++|.+..+.. ..-++++ +.++ ..+|.+|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6899999998878888999999999999998766544 3334433 2222 25899988654
No 59
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=41.21 E-value=69 Score=28.00 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=55.3
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--ccc
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSK 277 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~ 277 (427)
+...+|||.|+. .-+.+.+...+.|+.-|..+-+-+++ .=+|++|..| .++++||.+|=-...|- -..
T Consensus 2 ~~~~V~Iimgs~---SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 78 (163)
T 3ors_A 2 NAMKVAVIMGSS---SDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVAS 78 (163)
T ss_dssp -CCCEEEEESCG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred CCCeEEEEECcH---HHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 346799999974 47888999999999999997776666 5579998776 34898888887776653 223
Q ss_pred CCCCccc
Q 014283 278 EFLAPVI 284 (427)
Q Consensus 278 ~f~kPvl 284 (427)
.-..|||
T Consensus 79 ~t~~PVI 85 (163)
T 3ors_A 79 LTTLPVI 85 (163)
T ss_dssp HCSSCEE
T ss_pred ccCCCEE
Confidence 3456665
No 60
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.84 E-value=50 Score=29.94 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=49.2
Q ss_pred HhcCCeEEEEEcCC-cccCcHHHHHHHHHHHHHc-CCcEEEEEc--CCCCHHHH----cCC--CCCCEEEEecCCC
Q 014283 205 AKDANIIGVLVGTL-GVAGYLHMIHQMKELITKA-GKKAYTLVM--GKPNPAKL----ANF--PECDVFINVSCAQ 270 (427)
Q Consensus 205 a~~A~~iGIlvgTl-~~q~~~~~i~~l~~li~~~-GKK~y~~~v--gkln~aKL----aNF--~eiD~fVlvaCPr 270 (427)
.+..++||+|+... .-..+..+++.+++.++++ |....+... +.-++++. .++ ..+|.+|+.++..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 34568999999998 7778889999999999999 888777665 34565442 122 3699999987754
No 61
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=40.55 E-value=69 Score=28.09 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=55.2
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--cccCCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEFL 280 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~~f~ 280 (427)
.++||.|+. .-+.+.+...+.|+.-|..+-+-+++ .=+|++|..| .++++||.+|=-...|- -...-.
T Consensus 7 ~V~IimgS~---SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~ 83 (166)
T 3oow_A 7 QVGVIMGSK---SDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTT 83 (166)
T ss_dssp EEEEEESSG---GGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCS
T ss_pred eEEEEECcH---HhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccC
Confidence 699999974 47889999999999999987766666 5578888777 45899998887777763 233445
Q ss_pred Cccc
Q 014283 281 APVI 284 (427)
Q Consensus 281 kPvl 284 (427)
.|||
T Consensus 84 ~PVI 87 (166)
T 3oow_A 84 LPVL 87 (166)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 6665
No 62
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=40.55 E-value=42 Score=31.81 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=44.3
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEec
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVS 267 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlva 267 (427)
+..++||+|+..+.-..+..+++.+.+.++++|....+...+.-.+++ |.++ ..+|.+|+.+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 346799999998877777899999999999999987766655433332 2222 3699999875
No 63
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=40.41 E-value=16 Score=33.67 Aligned_cols=63 Identities=6% Similarity=-0.091 Sum_probs=45.1
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC-CHHHH----cCC--CCCCEEEEecCCCc
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKL----ANF--PECDVFINVSCAQT 271 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkl-n~aKL----aNF--~eiD~fVlvaCPr~ 271 (427)
.+||+|+..+.-..+..+++-+++.+++.|.+..++..... ++++. .++ ..+|..|+.+....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 57999999987777889999999999999988665554332 44432 111 26899988766544
No 64
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=40.23 E-value=71 Score=28.21 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=54.6
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--ccc
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSK 277 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~ 277 (427)
.+..||||.|+. .-+.+.+...+.|++-|-.+-+-+++ .=+|++|..| .++++||.+|=-...|- -..
T Consensus 11 ~~P~V~IimGS~---SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~ 87 (173)
T 4grd_A 11 SAPLVGVLMGSS---SDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA 87 (173)
T ss_dssp SSCSEEEEESSG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred CCCeEEEEeCcH---hHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence 457899999984 47889999999999999987665555 4568888766 46788887776666653 223
Q ss_pred CCCCccc
Q 014283 278 EFLAPVI 284 (427)
Q Consensus 278 ~f~kPvl 284 (427)
.-.+|||
T Consensus 88 ~t~~PVI 94 (173)
T 4grd_A 88 KTTVPVL 94 (173)
T ss_dssp HCCSCEE
T ss_pred cCCCCEE
Confidence 3456654
No 65
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=39.62 E-value=70 Score=28.26 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=56.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--cccCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEF 279 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~~f 279 (427)
..+|||.|+.+ -+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|=-...|- -...-
T Consensus 13 ~~V~IimGS~S---D~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 89 (174)
T 3kuu_A 13 VKIAIVMGSKS---DWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKT 89 (174)
T ss_dssp CCEEEEESSGG---GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTC
T ss_pred CcEEEEECcHH---HHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcc
Confidence 36999999754 7888999999999999998777766 5679999887 45899988887777663 23345
Q ss_pred CCccc
Q 014283 280 LAPVI 284 (427)
Q Consensus 280 ~kPvl 284 (427)
.+|||
T Consensus 90 ~~PVI 94 (174)
T 3kuu_A 90 LVPVL 94 (174)
T ss_dssp SSCEE
T ss_pred CCCEE
Confidence 67775
No 66
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=39.57 E-value=45 Score=29.70 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=54.6
Q ss_pred HHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC------CCCEEEEecCCCcccc
Q 014283 202 VEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL 274 (427)
Q Consensus 202 I~ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF~------eiD~fVlvaCPr~si~ 274 (427)
-++++....+|||.|+. .-+.+.+...+.|+.-|..+-+-+++ .=+|++|..|. ++++||.+|=-...|-
T Consensus 15 ~~~~~~~~~V~IimGS~---SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp 91 (182)
T 1u11_A 15 EDKAASAPVVGIIMGSQ---SDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP 91 (182)
T ss_dssp -----CCCSEEEEESSG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH
T ss_pred HhhhcCCCEEEEEECcH---HHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 34455567899999984 47889999999999999997766665 55788887663 3788887776666653
Q ss_pred --cccCCCCccc
Q 014283 275 --DSKEFLAPVI 284 (427)
Q Consensus 275 --d~~~f~kPvl 284 (427)
-...-.+|||
T Consensus 92 gvvA~~t~~PVI 103 (182)
T 1u11_A 92 GMCAAWTRLPVL 103 (182)
T ss_dssp HHHHHHCSSCEE
T ss_pred HHHHhccCCCEE
Confidence 1223455654
No 67
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.85 E-value=33 Score=32.12 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 014283 193 KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 247 (427)
Q Consensus 193 r~L~rRy~~I~ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg 247 (427)
..++.......+.+.+++|.|. | +||.|--.+.-.|-..+.++|+|+-++=.+
T Consensus 26 ~~l~~~l~~~~~~~~~~vI~v~-~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 26 GSVQVHLDEADKITGAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp --------------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred chhhhhhccccccCCceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3344444455567788899888 7 999999999999999999999999888776
No 68
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=38.72 E-value=24 Score=34.63 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=40.2
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCC--CCCCEEEE
Q 014283 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANF--PECDVFIN 265 (427)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF--~eiD~fVl 265 (427)
.+..++||+|+. ..-..+..+++-+++.++++|....++....- .+.+..+ ..+|.+|+
T Consensus 22 ~~~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~-~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 22 FTKRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDF-RARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCCCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-C-C--------CCCSEEEE
T ss_pred CCCCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCCeEEEecCCc-cchhhhHhcCCCCEEEE
Confidence 345679999995 55566679999999999999998877765432 2223333 26999987
No 69
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=38.64 E-value=23 Score=33.28 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.4
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 268 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaC 268 (427)
+..++||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-DNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45689999998877777889999999999999988765543 334433 2222 36999998775
No 70
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=38.64 E-value=41 Score=29.25 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=42.5
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-----HHHHcCC-----CCCCEEEEecCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-----PAKLANF-----PECDVFINVSCA 269 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln-----~aKLaNF-----~eiD~fVlvaCP 269 (427)
-+||||++.-...=.-.+++--++.|+++|....++.|=--. ..||+.- ..+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~V 83 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTV 83 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeee
Confidence 579999997544333366666677888899666666553222 2566655 679999999996
No 71
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=38.48 E-value=16 Score=33.81 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=45.8
Q ss_pred hcCCeEEEEEcC-----CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCCEEEEecCCC
Q 014283 206 KDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQ 270 (427)
Q Consensus 206 ~~A~~iGIlvgT-----l~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK-------LaNF~eiD~fVlvaCPr 270 (427)
+..++||+|+.. +.-..+..+++-+++.++++|.+..++..+ -++++ |.+ ..+|.+|+.++..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~-~~vdgiIi~~~~~ 94 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSE-NSGDLYHEVKTMIQS-KSVDGFILLYSLK 94 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCS-SHHHHHHHHHHHHHT-TCCSEEEESSCBT
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHh-CCCCEEEEeCCcC
Confidence 457899999998 777778899999999999999876554333 33332 222 3699999977643
No 72
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=38.41 E-value=57 Score=31.81 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=46.7
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc-CCCCCCEEEEecCCCc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 271 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa-NF~eiD~fVlvaCPr~ 271 (427)
...+.|+.+|.. .+...+++.+.+.+++.|.++-++-+.+.++..+. .+.+.|++| +++|.-
T Consensus 256 ~~kv~iiy~S~~-GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~ii-igsP~y 318 (414)
T 2q9u_A 256 QKKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVA-FASPTL 318 (414)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEE-EECCCB
T ss_pred CCeEEEEEECCC-chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEE-EEcCcc
Confidence 368899999986 46789999999999999988888888888876332 344567655 456644
No 73
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=38.27 E-value=63 Score=28.56 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--cccC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 278 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~~ 278 (427)
...+|||.|+. .-+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|=-...|- -...
T Consensus 7 ~~~V~IimgS~---SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 7 RPRVGVIMGSD---SDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp CCSEEEEESCG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEECcH---HhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 45699999974 47889999999999999987776666 5679999888 57899888887777653 2233
Q ss_pred CCCccc
Q 014283 279 FLAPVI 284 (427)
Q Consensus 279 f~kPvl 284 (427)
-.+|||
T Consensus 84 t~~PVI 89 (174)
T 3lp6_A 84 TPLPVI 89 (174)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 556665
No 74
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=37.72 E-value=33 Score=30.40 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHhcCCeEEEEEcC-CcccCcHHHHHHHHHHHHHcCCcEE---------------------------EEEcCCCCHHH
Q 014283 202 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 253 (427)
Q Consensus 202 I~ka~~A~~iGIlvgT-l~~q~~~~~i~~l~~li~~~GKK~y---------------------------~~~vgkln~aK 253 (427)
.+..++|+.|-|+-|= +.++.-...+..|-++|+++|+++- ++-|.+||++
T Consensus 24 a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d- 102 (186)
T 2bru_C 24 AELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDD- 102 (186)
T ss_dssp HHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCCCHHH-
T ss_pred HHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHHHHhcc-
Confidence 3444566666555442 2234444556666666677776643 6889999987
Q ss_pred HcCCCCCCEEEEecCC
Q 014283 254 LANFPECDVFINVSCA 269 (427)
Q Consensus 254 LaNF~eiD~fVlvaCP 269 (427)
|++.|+.++++--
T Consensus 103 ---f~~tDv~lVIGAN 115 (186)
T 2bru_C 103 ---FADTDTVLVIGAN 115 (186)
T ss_dssp ---HHHCSEEEECBCG
T ss_pred ---cccCCEEEEeccc
Confidence 8889999988754
No 75
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=37.35 E-value=25 Score=32.21 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=44.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr 270 (427)
.+||+|+.++.-..+..+++-+++.++++|.+..++..+ ++++- .++ ..+|.+|+.+...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~i~~l~~~~vdgiii~~~~~ 68 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAASGAKGFVICTPDP 68 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 479999999888888899999999999999877655442 55432 222 2689999887643
No 76
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=37.05 E-value=65 Score=30.17 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=46.9
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
+..++||+|+....-..+..+++-+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.+..
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 5678999999888777788999999999999998766543 34455542 222 369999987654
No 77
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=36.64 E-value=44 Score=31.30 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=46.8
Q ss_pred hcCCeEEEEEcC--CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 206 KDANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgT--l~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
+..++||+|+.. +....+..+++.+.+.++++|.+..++. ..-++++- .++ ..+|.+|+.+..
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 457899999998 7777888999999999999999876665 34444432 112 269999987654
No 78
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=36.62 E-value=1.6e+02 Score=26.00 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=52.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC---------CCHHHHcC----C--C--CCCEEEEecC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK---------PNPAKLAN----F--P--ECDVFINVSC 268 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgk---------ln~aKLaN----F--~--eiD~fVlvaC 268 (427)
..+++|||| ++.. ..+-...++.+++.|..+....-.. ++++.+.. + + ++|+. +++|
T Consensus 106 ~g~~rvgvl-t~~~----~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaI-vLgC 179 (223)
T 2dgd_A 106 LNVRKLWIG-TPYI----KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAV-YIAC 179 (223)
T ss_dssp TTCCEEEEE-ESSC----HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEE-EECC
T ss_pred cCCCeEEEE-eCCc----hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEE-EEeC
Confidence 446899999 4533 4445577888888998876554333 34444421 1 2 57765 4569
Q ss_pred CCcccc---c--ccCCCCcccCHHHHHH
Q 014283 269 AQTALL---D--SKEFLAPVITPFEAML 291 (427)
Q Consensus 269 Pr~si~---d--~~~f~kPvlTP~El~~ 291 (427)
=+.++. + .+++.+|||++-++.+
T Consensus 180 T~l~~~~~~~~l~~~~g~PVids~~~~a 207 (223)
T 2dgd_A 180 TALSTYEAVQYLHEDLDMPVVSENAAAM 207 (223)
T ss_dssp TTSCCTTHHHHHHHHHTSCEEEHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCCEEEhHHHHH
Confidence 999974 2 3357899999998865
No 79
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=36.05 E-value=33 Score=30.73 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=44.4
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc-CCCCHHHH----cCC--CC-CCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAKL----ANF--PE-CDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~v-gkln~aKL----aNF--~e-iD~fVlvaCP 269 (427)
+||+|+....-..+..+++.+++.++++|.+..++.. +.-++++- .++ .. +|.+|+.++.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6899999888888889999999999999988665554 34555432 222 25 8999988764
No 80
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=36.05 E-value=25 Score=32.23 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=41.2
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHH----HcCC--CCCCEEEEecCCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 270 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GK-K~y~~~vgkln~aK----LaNF--~eiD~fVlvaCPr 270 (427)
.++||+|+..+.-..+..+++-+++.++++|. +..++. ..-++++ +.++ ..+|.+|+.++..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND-SQNDQSKQNDQIDVLLAKGVKALAINLVDP 70 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSSG
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 35789998887767777888888888888887 544433 3334432 2222 3688888876544
No 81
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=35.92 E-value=87 Score=25.53 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEE------cCCCCHHHHcCCCCCCEEEEecCCCcccccccCC-C
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV------MGKPNPAKLANFPECDVFINVSCAQTALLDSKEF-L 280 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~------vgkln~aKLaNF~eiD~fVlvaCPr~si~d~~~f-~ 280 (427)
.++++|.-+.-|.+...-..+.|++..++.|...-+=. -+.|+++.+++ .|+.++.+--. +++..+| -
T Consensus 6 mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~---Ad~VIiA~d~~--v~~~~RF~G 80 (111)
T 2kyr_A 6 KKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAE---ATIIIHSVAVT--PEDNERFES 80 (111)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHH---CSEEEEEESSC--CTTGGGGTT
T ss_pred ccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHh---CCEEEEEeCCC--cCchhhcCC
Confidence 57899999999999999999999999999998865532 35899998876 47666665422 3334455 4
Q ss_pred Cccc
Q 014283 281 APVI 284 (427)
Q Consensus 281 kPvl 284 (427)
|||+
T Consensus 81 K~v~ 84 (111)
T 2kyr_A 81 RDVY 84 (111)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 6654
No 82
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=35.60 E-value=48 Score=31.39 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=44.1
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++. ..+ ..+|.+|+.+..
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999988877778899999999999999987665543 344432 222 368999887653
No 83
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=35.31 E-value=51 Score=27.71 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=37.5
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
++.|+.+|..| +...+++.|.+.+... ..+-++-+.+.+++.|.+ .|.+ +++||-
T Consensus 2 kilIvY~S~tG-nT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~---~d~i-i~g~pt 56 (169)
T 1czn_A 2 KIGLFYGTQTG-VTQTIAESIQQEFGGE-SIVDLNDIANADASDLNA---YDYL-IIGCPT 56 (169)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGG---CSEE-EEECCE
T ss_pred eEEEEEECCCc-HHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhh---CCEE-EEEecc
Confidence 57899999875 6778888888877543 346677777766665544 4654 556774
No 84
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=35.25 E-value=88 Score=27.77 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=52.0
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--cccCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEF 279 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~~f 279 (427)
..||||.|+.+ -+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||-.|=-...|- -...-
T Consensus 23 p~V~IimGS~S---D~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 23 SLVGVIMGSTS---DWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp CSEEEEESSGG---GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred ccEEEEECCHh---HHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 46999999854 7889999999999999987766666 5568888765 24666666655554442 23345
Q ss_pred CCccc
Q 014283 280 LAPVI 284 (427)
Q Consensus 280 ~kPvl 284 (427)
..|||
T Consensus 100 ~~PVI 104 (181)
T 4b4k_A 100 NLPVI 104 (181)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 66765
No 85
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=35.17 E-value=54 Score=29.33 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------HcCCCCCCEEEEecCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCA 269 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK-------LaNF~eiD~fVlvaCP 269 (427)
.++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++ |.+ ..+|.+|+.++.
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~-~~vdgii~~~~~ 69 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSD-YSIEQEEKLLSTFLE-SRPAGVVLFGSE 69 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECT-TCHHHHHHHHHHHHT-SCCCCEEEESSC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCC-CCHHHHHHHHHHHHh-cCCCEEEEeCCC
Confidence 4789999998877778899999999999999876655443 34432 222 368999988764
No 86
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=34.35 E-value=1.2e+02 Score=28.43 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=16.4
Q ss_pred eEEEEEcCCcccCc-HHHHHHHHHHHHHcCCcEEEEE
Q 014283 210 IIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLV 245 (427)
Q Consensus 210 ~iGIlvgTl~~q~~-~~~i~~l~~li~~~GKK~y~~~ 245 (427)
++.+|++..++.+. ..+.+++++.|+++|..+-++.
T Consensus 10 ~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~ 46 (304)
T 3s40_A 10 KVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILH 46 (304)
T ss_dssp SEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEE
Confidence 44455555544443 2344444455555554443333
No 87
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=34.12 E-value=1.1e+02 Score=22.91 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHh---cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 014283 195 LKRRYYLVEKAK---DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 247 (427)
Q Consensus 195 L~rRy~~I~ka~---~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg 247 (427)
|.|-...++||. .|+.+-|-++.-.-..-.++++.+.+++.+.|.|-.-+-|+
T Consensus 31 leralqelekalaragarnvqitisaendeqakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 31 LERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 344444555554 38999999998887778899999999999999998766654
No 88
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=33.91 E-value=40 Score=30.71 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSC 268 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaC 268 (427)
..+||+++...+-..+..+++-+++.++++|.+..++....-++++. ..+ ..+|.+|+.+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45778887776656666777788888887775543333244455442 111 35787777654
No 89
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=33.89 E-value=87 Score=31.14 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCcc--cCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHHHcCCCC-CCEEEE
Q 014283 208 ANIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFPE-CDVFIN 265 (427)
Q Consensus 208 A~~iGIlvgTl~~--q~~~~~i~~l~~li~~~GK-K~y~~~vgkln~aKLaNF~e-iD~fVl 265 (427)
++..||-+=+.+. ..-..+++++++.+.++|. ++-+++.|.||+++++.+.+ ||+|-+
T Consensus 233 ~~~d~IrlDs~~~~~gd~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~vD~~gv 294 (395)
T 2i14_A 233 KKLFAVRLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVDAFGV 294 (395)
T ss_dssp GGCCEEEECCCTTTCSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGGCSEEEE
T ss_pred cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHhCCEEEe
Confidence 6778899988775 6677899999999999884 47889999999999988843 887764
No 90
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=33.58 E-value=56 Score=29.73 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=43.3
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH-------HHcCC--CCCCEEEEecCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-------KLANF--PECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~a-------KLaNF--~eiD~fVlvaCP 269 (427)
+..++||+|+....-..+..+++-+++.++++|.+..++..+ -+++ .+.++ ..+|.+|+.+..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGC-GESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCC-SSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 456799999988776777899999999999999876554433 2222 22222 368999887654
No 91
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.29 E-value=56 Score=30.74 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCcc-cCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC----CCCCEEEEec
Q 014283 208 ANIIGVLVGTLGV-AGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF----PECDVFINVS 267 (427)
Q Consensus 208 A~~iGIlvgTl~~-q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF----~eiD~fVlva 267 (427)
..+||+|+..... ..+..+++-+++.+++.|.+..++. ..-++++ +.++ ..+|.+|+++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-AERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-CCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4689999988776 5677889999999999998876654 4445554 2222 3689988875
No 92
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=33.01 E-value=54 Score=30.56 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=44.1
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----HcCC--CCCCEEEEecCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aK----LaNF--~eiD~fVlvaCP 269 (427)
+..++||+|+..+.-..+..+++-+++.++++|.+..++..+ -++++ +..+ ..+|.+|+.+..
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSD-QNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECC-SHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-CChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 346799999998877788899999999999999887655433 33332 2233 369999987654
No 93
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=32.58 E-value=48 Score=29.86 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=45.2
Q ss_pred HHHHhcCCeEEEEEcC-CcccCcHHHHHHHHHHHHHcCCcEE---------------------------EEEcCCCCHHH
Q 014283 202 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 253 (427)
Q Consensus 202 I~ka~~A~~iGIlvgT-l~~q~~~~~i~~l~~li~~~GKK~y---------------------------~~~vgkln~aK 253 (427)
.+..++|+.|-|+-|= +.++.-...+..|-++|+++|+++- ++-|.+||++
T Consensus 40 a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d- 118 (203)
T 2fsv_C 40 AFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSS- 118 (203)
T ss_dssp HHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGG-
T ss_pred HHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCCCccEEEEEecCCHHHHhhHHHHhhh-
Confidence 3455677777666552 2344445566777777777777754 6777788876
Q ss_pred HcCCCCCCEEEEecCCC
Q 014283 254 LANFPECDVFINVSCAQ 270 (427)
Q Consensus 254 LaNF~eiD~fVlvaCPr 270 (427)
|++.|+.++++--.
T Consensus 119 ---f~~tDv~lVIGAND 132 (203)
T 2fsv_C 119 ---FQTADVAFVIGAND 132 (203)
T ss_dssp ---STTCSEEEEESCCG
T ss_pred ---hhhcCEEEEecccc
Confidence 99999999998653
No 94
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=32.54 E-value=38 Score=29.86 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHhcCCeEEEEEcC-CcccCcHHHHHHHHHHHHHcCCcEE---------------------------EEEcCCCCHHH
Q 014283 202 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 253 (427)
Q Consensus 202 I~ka~~A~~iGIlvgT-l~~q~~~~~i~~l~~li~~~GKK~y---------------------------~~~vgkln~aK 253 (427)
.+..++|+.+-|+-|= +.++.-...+..|-++|+++|+++- ++-|.+||++
T Consensus 17 a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMdeIN~d- 95 (180)
T 1pno_A 17 AFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSS- 95 (180)
T ss_dssp HHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGGG-
T ss_pred HHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHHHhhh-
Confidence 3445567777555542 2234445556666677777777643 6777788875
Q ss_pred HcCCCCCCEEEEecCCC
Q 014283 254 LANFPECDVFINVSCAQ 270 (427)
Q Consensus 254 LaNF~eiD~fVlvaCPr 270 (427)
|++.|+.++++--.
T Consensus 96 ---f~~tDv~lVIGAND 109 (180)
T 1pno_A 96 ---FQTADVAFVIGAND 109 (180)
T ss_dssp ---GGGCSEEEEESCCG
T ss_pred ---hhhcCEEEEecccc
Confidence 99999999988653
No 95
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=31.96 E-value=84 Score=27.12 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=42.1
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCc---EEEEEc-CCCC----HHHHcCCCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-GKPN----PAKLANFPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK---~y~~~v-gkln----~aKLaNF~eiD~fVlvaCP 269 (427)
+||||+++-...=.-.+++--++.|+++|-+ ..++.| |-.- ..||+.-..+|++|-++|.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~V 81 (154)
T 1hqk_A 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEE
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 6999999764433346677777888889853 345544 3221 3677877789999999997
No 96
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=31.69 E-value=76 Score=27.31 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=44.5
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHH-cCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCCc
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITK-AGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 271 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~-~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr~ 271 (427)
.+.||.++.. -+...+++.+.+.+++ .|-.+-++-+.+.+.++|.+. |++| +++|--
T Consensus 6 kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~a---D~ii-~gsP~y 63 (188)
T 2ark_A 6 KVLVIYDTRT-GNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWA---DGLA-VGSPTN 63 (188)
T ss_dssp EEEEEECCSS-SHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHC---SEEE-EEEECB
T ss_pred EEEEEEECCC-cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhC---CEEE-EEeCcc
Confidence 5788999965 4677899999999998 888888889999888888654 6554 566644
No 97
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=31.68 E-value=42 Score=29.69 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=41.1
Q ss_pred HHHhcCCeEEEEEcC-CcccCcHHHHHHHHHHHHHcCCcEE---------------------------EEEcCCCCHHHH
Q 014283 203 EKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAKL 254 (427)
Q Consensus 203 ~ka~~A~~iGIlvgT-l~~q~~~~~i~~l~~li~~~GKK~y---------------------------~~~vgkln~aKL 254 (427)
+..++|+.+-|+=|= +.++.-...+..|-++|+++|+++- ++-|.+||++
T Consensus 17 ~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d-- 94 (184)
T 1d4o_A 17 DMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHD-- 94 (184)
T ss_dssp HHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGGG--
T ss_pred HHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHHhhh--
Confidence 344556666555542 2234445556666666666666643 7778888876
Q ss_pred cCCCCCCEEEEecCC
Q 014283 255 ANFPECDVFINVSCA 269 (427)
Q Consensus 255 aNF~eiD~fVlvaCP 269 (427)
|++.|+.++++--
T Consensus 95 --f~~tDv~lVIGAN 107 (184)
T 1d4o_A 95 --FPDTDLVLVIGAN 107 (184)
T ss_dssp --GGGCSEEEEESCS
T ss_pred --hhhcCEEEEecCC
Confidence 9999999998864
No 98
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=31.17 E-value=1e+02 Score=32.79 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHH-HcCCcEEEEEcCCCCHHHHcCCCCCCEEEEe
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELIT-KAGKKAYTLVMGKPNPAKLANFPECDVFINV 266 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~-~~GKK~y~~~vgkln~aKLaNF~eiD~fVlv 266 (427)
.+.+.|+.+|..| +...++++|.+.++ +.|.++-++-+.+..++.|.+++ |.+|++
T Consensus 49 ~~ki~IlY~S~tG-nte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~--~~vi~~ 105 (682)
T 2bpo_A 49 NKNYLVLYASQTG-TAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVP--VIVSIF 105 (682)
T ss_dssp TCSEEEEEECSSS-HHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCC--SEEEEE
T ss_pred CCeEEEEEECCch-HHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcC--CeEEEE
Confidence 4579999999885 47789999999999 88999999999999998887664 555444
No 99
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.04 E-value=1.4e+02 Score=25.49 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=31.7
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK 248 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgk 248 (427)
.++-||.++.. .+...+++.+.+.+++.|-.+-++-+.+
T Consensus 6 ~kilii~~S~~-g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRH-GATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCC-ChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 46889999974 4678899999999999998877777765
No 100
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=30.71 E-value=70 Score=27.11 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=41.6
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCP 269 (427)
.+.|+-+|..| +...+++.|.+.+.+.|..+-++-+.+.++..|.+ .|.+ +++||
T Consensus 11 ki~I~Y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~d~i-i~g~p 65 (167)
T 1ykg_A 11 GITIISASQTG-NARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIAS---EKLL-IVVTS 65 (167)
T ss_dssp -CEEEEECSSS-HHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGG---CSEE-EEEEE
T ss_pred eEEEEEECCch-HHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhcc---CCeE-EEEEc
Confidence 57899999874 57889999999999999888888888777766544 4654 44555
No 101
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=30.55 E-value=36 Score=30.90 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.2
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCP 269 (427)
+...+||+|+.. .-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++.
T Consensus 6 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 6 GRSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVAVASS-EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp -CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEEEEC-TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 345689999988 6566778999999999999988765543 3454432 222 368998887664
No 102
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=30.33 E-value=95 Score=29.89 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=46.1
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHc-CCCCCCEEEEecCCCc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 271 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLa-NF~eiD~fVlvaCPr~ 271 (427)
...+.|+.++.. -+...+++.+.+.+++.|..+-++-+.+..++.+. ++.+.|.+| +++|.-
T Consensus 256 ~~k~~i~~~S~~-gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~ii-igsP~y 318 (404)
T 2ohh_A 256 DERVTVIYDTMH-GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIA-LGAPTI 318 (404)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEE-EECCEE
T ss_pred CCcEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEE-EECccc
Confidence 357778888865 46789999999999988988889999988876442 344567654 566743
No 103
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=29.39 E-value=85 Score=26.27 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=37.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
.++.|+.+|..| +...+++.|.+.+... .+-++-+.+.+++.|.+ .|.+ +++||-
T Consensus 2 mkilIiY~S~tG-nT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~~---~d~i-i~g~p~ 56 (169)
T 1obo_A 2 KKIGLFYGTQTG-KTESVAEIIRDEFGND--VVTLHDVSQAEVTDLND---YQYL-IIGCPT 56 (169)
T ss_dssp CSEEEEECCSSS-HHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGGG---CSEE-EEEEEE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHhh---CCEE-EEEEee
Confidence 468899999875 5778888888877653 56677777776665544 4654 445554
No 104
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=29.10 E-value=55 Score=32.65 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=47.1
Q ss_pred CeEEEEEcCCcc--cCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHHHcCCC--CCCEEEE
Q 014283 209 NIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFP--ECDVFIN 265 (427)
Q Consensus 209 ~~iGIlvgTl~~--q~~~~~i~~l~~li~~~GK-K~y~~~vgkln~aKLaNF~--eiD~fVl 265 (427)
+..||-+=+.+. ..-..+++++++.+.++|. +.-+++.|.||+++++.+. .+|+|-+
T Consensus 236 ~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gv 297 (398)
T 2i1o_A 236 KVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGV 297 (398)
T ss_dssp CCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEe
Confidence 678888888765 6677889999999999883 4789999999999998874 5888864
No 105
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=28.90 E-value=1.4e+02 Score=26.52 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCC------CCCCEEEEecCCCcccc--cccC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 278 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF------~eiD~fVlvaCPr~si~--d~~~ 278 (427)
...+|||.|+. .-+.+.+...+.|+.-|-.+-+-+++ .=+|++|..| .++++||.+|=-...|- -...
T Consensus 13 ~~~V~IimGS~---SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 89 (183)
T 1o4v_A 13 VPRVGIIMGSD---SDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASI 89 (183)
T ss_dssp -CEEEEEESCG---GGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEeccH---HHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhc
Confidence 46899999974 47889999999999999997666665 5578888777 35888887776666653 2233
Q ss_pred CCCccc
Q 014283 279 FLAPVI 284 (427)
Q Consensus 279 f~kPvl 284 (427)
-.+|||
T Consensus 90 t~~PVI 95 (183)
T 1o4v_A 90 THLPVI 95 (183)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 456654
No 106
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.85 E-value=53 Score=30.63 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=46.0
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CC--CCEEEEecCCC
Q 014283 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PE--CDVFINVSCAQ 270 (427)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~e--iD~fVlvaCPr 270 (427)
+..++||+|+..++-..+..+++-+++.+++.|.+..++.. .-++++. ..+ .. +|.+|+.++..
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-EGSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 34678999999888777889999999999999988765543 3444432 222 25 89988876543
No 107
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=28.72 E-value=33 Score=31.76 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=43.0
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCC----cEEEE-EcCCCCHHHHcC----C--CCCCEEEEecCC
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGK----KAYTL-VMGKPNPAKLAN----F--PECDVFINVSCA 269 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GK----K~y~~-~vgkln~aKLaN----F--~eiD~fVlvaCP 269 (427)
..++||||. .+....+.++++-+++.++++|. +..++ .-.+=++++..+ | ..+|..|+++-+
T Consensus 7 ~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~ 79 (302)
T 2qh8_A 7 KTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH
T ss_pred CCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH
Confidence 568999874 67777788999999999999998 54443 334545544322 1 268998887643
No 108
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=27.98 E-value=14 Score=20.97 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=6.9
Q ss_pred CCcccCCCC
Q 014283 389 RSYHGLEMQ 397 (427)
Q Consensus 389 Rt~~GL~~~ 397 (427)
-+|+|||..
T Consensus 8 cswrglenh 16 (23)
T 3ox7_P 8 CSWRGLENH 16 (26)
T ss_pred cccccchhh
Confidence 589999853
No 109
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=27.39 E-value=1.4e+02 Score=26.00 Aligned_cols=73 Identities=10% Similarity=0.127 Sum_probs=55.2
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC-------CCCEEEEecCCCcccc--cccC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP-------ECDVFINVSCAQTALL--DSKE 278 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF~-------eiD~fVlvaCPr~si~--d~~~ 278 (427)
..+|||.|+. .-+.+.+...+.|++-|..+-+-+++ .=+|++|..|. ++++||.+|=-...|- -...
T Consensus 3 ~~V~Iimgs~---SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~ 79 (159)
T 3rg8_A 3 PLVIILMGSS---SDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGF 79 (159)
T ss_dssp CEEEEEESSG---GGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHH
T ss_pred CeEEEEECcH---HHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhc
Confidence 3689999974 47888999999999999987766666 56799998773 5788888887777663 2334
Q ss_pred CCCccc
Q 014283 279 FLAPVI 284 (427)
Q Consensus 279 f~kPvl 284 (427)
-.+|||
T Consensus 80 t~~PVI 85 (159)
T 3rg8_A 80 VKGATI 85 (159)
T ss_dssp SSSCEE
T ss_pred cCCCEE
Confidence 566765
No 110
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=27.29 E-value=29 Score=36.93 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHh--cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCH-----HHHcCCCCCCEEEEecCCCcc
Q 014283 201 LVEKAK--DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP-----AKLANFPECDVFINVSCAQTA 272 (427)
Q Consensus 201 ~I~ka~--~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~-----aKLaNF~eiD~fVlvaCPr~s 272 (427)
.++.|+ ++.++|| +++. ..|++.+..+.+.|+++|-. .+++.|.+-. ++++. ++|.|+-.+|+-..
T Consensus 552 ~v~aa~e~~adiv~l--Ssl~-~~~~~~~~~v~~~Lk~aG~~-~V~vgG~P~~d~~~~~~~~~--G~D~~~~~g~~~~~ 624 (637)
T 1req_B 552 IVEAFKKSGAQVADL--CSSA-KVYAQQGLEVAKALKAAGAK-ALYLSGAFKEFGDDAAEAEK--LIDGRLFMGMDVVD 624 (637)
T ss_dssp HHHHHHHHTCSEEEE--ECCH-HHHHHHHHHHHHHHHHTTCS-EEEEESCGGGGGGGHHHHHH--HCCCEECTTCCHHH
T ss_pred HHHHHHhcCCCEEEE--eccc-HHHHHHHHHHHHHHHhCCCC-eEEEeCCCCccchhhHHHHh--ccceEecCCcCHHH
Confidence 344444 4566654 5554 66999999999999999983 3567787543 56776 89999999887544
No 111
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=26.96 E-value=44 Score=30.77 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=40.7
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH----cCC--CCCCEEEEecCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL----aNF--~eiD~fVlvaCPr 270 (427)
.+||+++.+.+-..+..+++-+++.+++.|....++. ..-++++. ..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD-GQQKQENQIKAVRSFVAQGVDAIFIAPVVA 69 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 5789998886655566788888888888888765543 33344432 122 2689888877654
No 112
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=26.74 E-value=92 Score=26.88 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=41.3
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCc---EEEEEc-CCCC----HHHHcCCCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-GKPN----PAKLANFPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK---~y~~~v-gkln----~aKLaNF~eiD~fVlvaCP 269 (427)
+||||++.-...=.-.+++--++.|+++|-+ ..++.| |-.- ..||+.-..+|++|-++|.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (154)
T 1rvv_A 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTV 81 (154)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEE
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 6999999754433346667777888888853 344444 3221 3677776789999999997
No 113
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=26.56 E-value=51 Score=29.78 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=43.1
Q ss_pred HHHHhcCCeEEEEEcC-CcccCcHHHHHHHHHHHHHcCCcEE---------------------------EEEcCCCCHHH
Q 014283 202 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 253 (427)
Q Consensus 202 I~ka~~A~~iGIlvgT-l~~q~~~~~i~~l~~li~~~GKK~y---------------------------~~~vgkln~aK 253 (427)
.+..++|+.|-|+-|= +.++.-...+..|-++|+++|+++- ++-|.+||++
T Consensus 39 a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d- 117 (207)
T 1djl_A 39 IDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHD- 117 (207)
T ss_dssp HHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGG-
T ss_pred HHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHHhhh-
Confidence 3455667777666552 2234445556666777777777643 7778888876
Q ss_pred HcCCCCCCEEEEecCC
Q 014283 254 LANFPECDVFINVSCA 269 (427)
Q Consensus 254 LaNF~eiD~fVlvaCP 269 (427)
|++.|+.++++--
T Consensus 118 ---f~~tDv~lVIGAN 130 (207)
T 1djl_A 118 ---FPDTDLVLVIGAN 130 (207)
T ss_dssp ---GGGCSEEEEESCC
T ss_pred ---hhhcCEEEEeccc
Confidence 9999999998854
No 114
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=25.85 E-value=1.7e+02 Score=28.11 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH-cCCCCCCEEEEecCCCc
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL-ANFPECDVFINVSCAQT 271 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKL-aNF~eiD~fVlvaCPr~ 271 (427)
-+.+.|+-++.. -+...+++.+.+.+++.|..+-++-+.+..+..| ..+.+.|++|+ +||--
T Consensus 252 ~~kv~i~y~S~~-Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-gsp~~ 314 (402)
T 1e5d_A 252 TNKVVIFYDSMW-HSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIV-GSPTH 314 (402)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCCB
T ss_pred CCcEEEEEECCC-hhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEE-ECCcc
Confidence 467888888875 4567889999999999898888888988887775 23445676554 55543
No 115
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=25.75 E-value=41 Score=35.51 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=48.3
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCC--CCEEEEecCC
Q 014283 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE--CDVFINVSCA 269 (427)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~e--iD~fVlvaCP 269 (427)
..+.+.|+-||..| +...++++|.+.++++|.++-++-+.+.+++.|.++++ -+.+ ++.||
T Consensus 17 ~~~~i~I~YgS~tG-nte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~v-i~~~s 79 (618)
T 3qe2_A 17 TGRNIIVFYGSQTG-TAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALV-VFCMA 79 (618)
T ss_dssp HTCSEEEEEECSSS-HHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEE-EEEEE
T ss_pred cCCeEEEEEECChh-HHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEE-EEEcC
Confidence 45779999999874 56789999999999999999888899999998877653 3444 44454
No 116
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=24.97 E-value=1.2e+02 Score=26.31 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=33.7
Q ss_pred eEEEEEcCCc-ccCcHHHHHHHHHH-HHHcCCcEEEEEcCCCCH
Q 014283 210 IIGVLVGTLG-VAGYLHMIHQMKEL-ITKAGKKAYTLVMGKPNP 251 (427)
Q Consensus 210 ~iGIlvgTl~-~q~~~~~i~~l~~l-i~~~GKK~y~~~vgkln~ 251 (427)
++.||.|+.. ..+...+++.+.+. ++++|-.+-++-+.+++.
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~ 47 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDP 47 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCc
Confidence 5788999874 34577899999998 898898888888888754
No 117
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=24.80 E-value=1.8e+02 Score=27.60 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=16.1
Q ss_pred eEEEEEcCCcccCc-HHHHHHHHHHHHHcCCcEEEE
Q 014283 210 IIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTL 244 (427)
Q Consensus 210 ~iGIlvgTl~~q~~-~~~i~~l~~li~~~GKK~y~~ 244 (427)
.++||++..++.+. ..+.+++++.|+++|..+.++
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~ 61 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAY 61 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEE
Confidence 34555555444332 234445555555555444433
No 118
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=24.48 E-value=1.2e+02 Score=28.78 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=23.5
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 247 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg 247 (427)
++++||++..++.+ ...+++.+.++++|.++.+..-.
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECC
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEec
Confidence 45677777776665 45566667777777665555443
No 119
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=24.28 E-value=1.6e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=32.1
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 249 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkl 249 (427)
.++-||.++ . .+...+++.+.+.+++.|-.+-++-+.+.
T Consensus 5 mkilii~~S-~-g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-Y-GSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-S-SHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-c-cHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 367889999 4 46788999999999999998888877764
No 120
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=23.65 E-value=86 Score=27.15 Aligned_cols=60 Identities=5% Similarity=0.021 Sum_probs=40.8
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCC--cEEEEEcCC---C--CHHHHcCCCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGK--KAYTLVMGK---P--NPAKLANFPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GK--K~y~~~vgk---l--n~aKLaNF~eiD~fVlvaCP 269 (427)
+||||++.-...=.-.+++--++.|+++|- ...++.|=- + -..||+.-.++|++|-++|-
T Consensus 15 ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (156)
T 1c2y_A 15 RFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAV 81 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 599999975443333666666778888885 344443432 1 13677777789999999997
No 121
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=23.60 E-value=2.1e+02 Score=27.59 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=45.8
Q ss_pred HHHHHhcCCeEEEEEcCCccc-CcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCC--------------------C
Q 014283 201 LVEKAKDANIIGVLVGTLGVA-GYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--------------------E 259 (427)
Q Consensus 201 ~I~ka~~A~~iGIlvgTl~~q-~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~--------------------e 259 (427)
+.+..+++++|.| +|-.... .-+.-.--|.+++++.||+++++.-++++ ..|+-++ +
T Consensus 14 l~~~i~~~~~i~I-~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~~~~-~~~~fl~~~~~i~~~~~~~~~~~~~~~~ 91 (343)
T 3dma_A 14 FTKWFERADKIVI-VSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFP-DFLKWMPGSKDILLYDRYQEFADKLIME 91 (343)
T ss_dssp HHHHHHHCSEEEE-EECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESSCCC-GGGTTSTTGGGCEETTTCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEE-EecCCCChHHHHHHHHHHHHHHHcCCCEEEECCCCCc-hHhhhccCcchhcccccChHHHhhcccC
Confidence 4445566788854 4444322 23455567888899999999999888764 3343222 2
Q ss_pred CCEEEEecCCCccc
Q 014283 260 CDVFINVSCAQTAL 273 (427)
Q Consensus 260 iD~fVlvaCPr~si 273 (427)
.|.+|+|-|...+-
T Consensus 92 ~~lvi~VD~~~~~r 105 (343)
T 3dma_A 92 ADVICCLDFNALKR 105 (343)
T ss_dssp CSEEEEESCSSGGG
T ss_pred CCEEEEEeCCChHH
Confidence 47888888886553
No 122
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=23.28 E-value=81 Score=27.63 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHc-CCcEEEEEcCCCC-----HHHHcCCCCCCEEEEecCCC
Q 014283 223 YLHMIHQMKELITKA-GKKAYTLVMGKPN-----PAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 223 ~~~~i~~l~~li~~~-GKK~y~~~vgkln-----~aKLaNF~eiD~fVlvaCPr 270 (427)
.+.+..+|+++|++. |.++++.--+..+ ..++|| +.|+||-+=|--
T Consensus 30 ~l~ia~~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an--~adlfISIH~Na 81 (182)
T 3czx_A 30 AQDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIR--GSDVAIEFHTNA 81 (182)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHH--TCSEEEEECCBC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhh--CCCEEEEeccCC
Confidence 456677777777777 7776544333222 456677 689998886653
No 123
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.20 E-value=45 Score=30.64 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=41.6
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCC---cEEEEE-cCCCCHHH-------HcCCCCCCEEEEecCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGK---KAYTLV-MGKPNPAK-------LANFPECDVFINVSCA 269 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GK---K~y~~~-vgkln~aK-------LaNF~eiD~fVlvaCP 269 (427)
++|||| -.+.-..+.++++-+++.++++|. +..+++ -.+=++++ |.+- .+|..|+++.+
T Consensus 3 ~~Igvi-~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~~~ 72 (295)
T 3lft_A 3 AKIGVL-QFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVGIATP 72 (295)
T ss_dssp EEEEEE-ECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEEESHH
T ss_pred eEEEEE-EccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEECCcH
Confidence 589988 556666778999999999999998 754443 34445544 3332 69999887654
No 124
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=22.99 E-value=26 Score=20.44 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=8.8
Q ss_pred ccCCCCCCCC
Q 014283 392 HGLEMQCNSS 401 (427)
Q Consensus 392 ~GL~~~~g~~ 401 (427)
||+||++|++
T Consensus 4 qgvepdigqt 13 (26)
T 2lti_A 4 QGVEPDIGQT 13 (26)
T ss_dssp SSSSCCBBTT
T ss_pred cccCCCcchh
Confidence 7999999986
No 125
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=22.74 E-value=1.1e+02 Score=29.08 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=45.7
Q ss_pred HHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCC--CCCEEEEecCCCc
Q 014283 204 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFINVSCAQT 271 (427)
Q Consensus 204 ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~--eiD~fVlvaCPr~ 271 (427)
.|.+++.=.|.+.+.+ ++.++.+.+.++..+.+.-+.+.|.||++.+..|. ++|.+.+-+=...
T Consensus 208 eA~~aGaD~I~LDn~~----~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~IsvGslt~s 273 (285)
T 1o4u_A 208 RAVEAGADIVMLDNLS----PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQ 273 (285)
T ss_dssp HHHHTTCSEEEEESCC----HHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTSS
T ss_pred HHHHcCCCEEEECCCC----HHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEEeHHHcC
Confidence 3444555567788754 45666666666665667889999999999999886 4899997764443
No 126
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=22.63 E-value=1.1e+02 Score=26.57 Aligned_cols=60 Identities=7% Similarity=-0.021 Sum_probs=41.2
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCc---EEEEEc-CCCC----HHHHcCCCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-GKPN----PAKLANFPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK---~y~~~v-gkln----~aKLaNF~eiD~fVlvaCP 269 (427)
+||||++.-...=.-.+++.-++.|+++|-+ ..++.| |-.- ..||+.-..+|++|-++|.
T Consensus 12 ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 79 (158)
T 1di0_A 12 KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFV 79 (158)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEC
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeecc
Confidence 6999999754433336666677778888854 344434 3211 3677777789999999998
No 127
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=22.09 E-value=1.7e+02 Score=27.05 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCH--HHHcCC-CCCCEEEEecCCC
Q 014283 195 LKRRYYLVEKAK-DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP--AKLANF-PECDVFINVSCAQ 270 (427)
Q Consensus 195 L~rRy~~I~ka~-~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~--aKLaNF-~eiD~fVlvaCPr 270 (427)
+.+...++.+.. +++++|||.++ +-.+....++.+++.+++.|.+.....+...+. +.+... +++|++.....+.
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~-~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNP-GEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCC-CcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcc
Confidence 345667777776 89999999876 445667788999999999999987777665542 122222 4688887654332
Q ss_pred cc-----cc-cccCCCCcccCHHHHHHhhCCCCccccceeeccccc
Q 014283 271 TA-----LL-DSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL 310 (427)
Q Consensus 271 ~s-----i~-d~~~f~kPvlTP~El~~aL~~~~~w~g~y~~Df~~~ 310 (427)
.. +. -......||++..+..+.-|. -+-|..|++++
T Consensus 205 ~~~~~~~i~~~~~~~~iPv~~~~~~~v~~G~----l~~~~~~~~~~ 246 (302)
T 3lkv_A 205 VASAIEGMIVAANQAKTPVFGAATSYVERGA----IASLGFDYYQI 246 (302)
T ss_dssp HHHTHHHHHHHHHHTTCCEEESSHHHHHTTC----SEEEECCHHHH
T ss_pred hhhHHHHHHHHHhhcCCceeecccccccCCc----eEEEecCHHHH
Confidence 11 01 123456677766666554322 23455555544
No 128
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=21.85 E-value=87 Score=29.26 Aligned_cols=48 Identities=13% Similarity=-0.084 Sum_probs=37.9
Q ss_pred ccCcHHHHHHHHHHHHHcCCcEEEEEcCCC--CHHHHcCCCCCCEEEEecCCC
Q 014283 220 VAGYLHMIHQMKELITKAGKKAYTLVMGKP--NPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 220 ~q~~~~~i~~l~~li~~~GKK~y~~~vgkl--n~aKLaNF~eiD~fVlvaCPr 270 (427)
+..+..-...|++.|++.|..+-.+....+ ++++|..| |++|+...+.
T Consensus 12 g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~y---DvIIl~d~~~ 61 (259)
T 3rht_A 12 DTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQ---DLVILSDYPA 61 (259)
T ss_dssp SSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTC---SEEEEESCCG
T ss_pred CCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcC---CEEEEcCCcc
Confidence 455677788999999999999988887777 67888766 8999875544
No 129
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=21.84 E-value=79 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 249 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkl 249 (427)
..++-||.++.. .+...+++.+.+.+++.|-.+-++-+.+.
T Consensus 6 mmkilii~~S~~-g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSST-GTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECCC-ChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 357889999884 46788999999999999988888888764
No 130
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.83 E-value=1.3e+02 Score=26.43 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=53.7
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHHcCCC------CCCEEEEecCCCcccc--cccCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 279 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vg-kln~aKLaNF~------eiD~fVlvaCPr~si~--d~~~f 279 (427)
..++||.|+. .-+.+.+...+.|++-|..+-+-+++ .=+|++|..|. ++++||.+|=-...|- -...-
T Consensus 12 ~~V~IimGS~---SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 88 (170)
T 1xmp_A 12 SLVGVIMGST---SDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 88 (170)
T ss_dssp CSEEEEESSG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTC
T ss_pred CcEEEEECcH---HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhcc
Confidence 4689999974 47889999999999999997766665 55688887663 3788887776666653 23344
Q ss_pred CCccc
Q 014283 280 LAPVI 284 (427)
Q Consensus 280 ~kPvl 284 (427)
.+|||
T Consensus 89 ~~PVI 93 (170)
T 1xmp_A 89 NLPVI 93 (170)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 66665
No 131
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=21.33 E-value=1.4e+02 Score=25.31 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=37.5
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr 270 (427)
++.|+-+|..| +...+++.|.+.+... .+-++-+.+..+..|.++ |. |+++||-
T Consensus 2 ki~IvY~S~tG-nT~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~---d~-ii~g~pt 55 (175)
T 1ag9_A 2 ITGIFFGSDTG-NTENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAY---DI-LLLGIPT 55 (175)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTC---SE-EEEECCE
T ss_pred EEEEEEECCCc-hHHHHHHHHHHHhccC--ceEEEEcccCChhHhhhC---CE-EEEEEee
Confidence 47899999875 4678888888877643 455667777777777655 54 4566773
No 132
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=20.91 E-value=1.5e+02 Score=25.56 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=40.3
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcC-C---cEEEEEc-CCCC----HHHHcCCCCCCEEEEecCC
Q 014283 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAG-K---KAYTLVM-GKPN----PAKLANFPECDVFINVSCA 269 (427)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~l~~li~~~G-K---K~y~~~v-gkln----~aKLaNF~eiD~fVlvaCP 269 (427)
-+||||++.-...=.-.+++..++.|+++| - ..-++.| |-.- ..||+.-..+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 82 (156)
T 3nq4_A 13 ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTV 82 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 368999987544333466666777788888 3 4444444 3222 3566655679999999997
No 133
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.85 E-value=71 Score=30.25 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=37.5
Q ss_pred hcCCeEEEEEcCC-----cccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC---HHH----HcCCCCCCEEEEecCC
Q 014283 206 KDANIIGVLVGTL-----GVAGYLHMIHQMKELITKAGKKAYTLVMGKPN---PAK----LANFPECDVFINVSCA 269 (427)
Q Consensus 206 ~~A~~iGIlvgTl-----~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln---~aK----LaNF~eiD~fVlvaCP 269 (427)
+..++||+|+... .-..+..+++-+.+.++ |....++..+.-. ..+ |.. ..+|.+|+.+.+
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNN-AAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHT-CCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 3468899999873 33345577777777766 7776666655222 222 222 369999888653
No 134
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=20.69 E-value=1.9e+02 Score=24.87 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHH-----HHcCC----------CCCCEEEEecCCCcc
Q 014283 229 QMKELITKAGKKAYTLVMGKPNPA-----KLANF----------PECDVFINVSCAQTA 272 (427)
Q Consensus 229 ~l~~li~~~GKK~y~~~vgkln~a-----KLaNF----------~eiD~fVlvaCPr~s 272 (427)
.+..++++.||+++++..+++++. ...++ .+.|.+|+|-|...+
T Consensus 22 al~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vi~VD~~~~~ 80 (188)
T 1wpn_A 22 AYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQ 80 (188)
T ss_dssp HHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCGG
T ss_pred HHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCCchhhhhhhccCCCeEEEEeCCCcc
Confidence 456667777777777777777633 11111 123577777777654
No 135
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=20.66 E-value=63 Score=27.33 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=36.3
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEE-cCCCCHHHHcC-CCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV-MGKPNPAKLAN-FPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~-vgkln~aKLaN-F~eiD~fVlvaCP 269 (427)
.--+|+|. +.....+.+++++++.+ .+.+ .|.++.+.+.. +...|++|+.+-.
T Consensus 71 ~~l~i~G~----~~~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~ 125 (200)
T 2bfw_A 71 MRFIIIGK----GDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYF 125 (200)
T ss_dssp EEEEEECC----BCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSC
T ss_pred eEEEEECC----CChHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCC
Confidence 33456664 33345677888888887 4555 99999877765 4678999986654
No 136
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=20.31 E-value=1.5e+02 Score=25.97 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=37.6
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCc---EEEEEc-C--CCC--HHHHcC-----CCCCCEEEEecCC
Q 014283 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-G--KPN--PAKLAN-----FPECDVFINVSCA 269 (427)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK---~y~~~v-g--kln--~aKLaN-----F~eiD~fVlvaCP 269 (427)
+||||++.....=.-.+++-.++.|+++|-+ .-++.| | +|- ..||+. ...+|++|-++|.
T Consensus 18 ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~V 90 (168)
T 1ejb_A 18 RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVL 90 (168)
T ss_dssp CEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEE
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEeccc
Confidence 5888888654333335666667777888843 333333 2 111 246665 4568999999997
No 137
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=20.13 E-value=1.5e+02 Score=29.56 Aligned_cols=71 Identities=15% Similarity=-0.029 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCCccc--ccccCCCCcccC
Q 014283 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTAL--LDSKEFLAPVIT 285 (427)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr~si--~d~~~f~kPvlT 285 (427)
.+.|-||- .+ ....++.|+++|++.|.++-.+.-+. +.+.|.+.++.++-+++ ||...- ...++|-.|.+.
T Consensus 183 ~~~VNilG-~~----~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~-~~~~~~~A~~Le~~GiP~i~ 255 (437)
T 3aek_A 183 AAELIVVG-AL----PDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILA-QPFLGETTGALERRGAKRIA 255 (437)
T ss_dssp CCCEEEES-CC----CHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEES-STTCHHHHHHHHHTTCEECC
T ss_pred CCcEEEEe-CC----ChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEE-CccHHHHHHHHHHcCCCeEe
Confidence 45565554 33 44666899999999999999998888 99999999888776666 887621 011567666443
Done!