Query 014284
Match_columns 427
No_of_seqs 346 out of 1652
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.4 3.5E-13 1.2E-17 110.1 5.8 72 248-323 13-87 (91)
2 2ep4_A Ring finger protein 24; 99.3 5.6E-13 1.9E-17 103.8 4.3 53 271-327 14-66 (74)
3 1x4j_A Ring finger protein 38; 99.3 9.6E-13 3.3E-17 103.1 4.8 50 271-324 22-71 (75)
4 2kiz_A E3 ubiquitin-protein li 99.3 1.9E-12 6.4E-17 99.5 4.7 50 271-324 13-62 (69)
5 1v87_A Deltex protein 2; ring- 99.3 3.6E-12 1.2E-16 106.9 6.6 53 271-323 24-92 (114)
6 1iym_A EL5; ring-H2 finger, ub 99.3 1.2E-12 4E-17 96.3 3.0 49 271-323 4-53 (55)
7 2ect_A Ring finger protein 126 99.3 2.2E-12 7.4E-17 101.4 4.0 49 271-323 14-62 (78)
8 2ecm_A Ring finger and CHY zin 99.2 4.4E-12 1.5E-16 93.0 4.7 49 271-323 4-53 (55)
9 2ea6_A Ring finger protein 4; 99.2 5.4E-12 1.9E-16 96.0 4.3 50 271-324 14-67 (69)
10 2ecl_A Ring-box protein 2; RNF 99.2 6.3E-12 2.2E-16 100.8 3.8 50 270-323 13-74 (81)
11 3ng2_A RNF4, snurf, ring finge 99.2 7.1E-12 2.4E-16 96.2 3.3 49 271-323 9-61 (71)
12 2d8t_A Dactylidin, ring finger 99.2 5.3E-12 1.8E-16 98.0 2.4 49 269-324 12-60 (71)
13 2djb_A Polycomb group ring fin 99.2 1.8E-11 6.3E-16 95.2 4.7 48 271-324 14-61 (72)
14 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.5E-16 96.8 3.9 50 271-325 14-64 (74)
15 3ztg_A E3 ubiquitin-protein li 99.2 1.5E-11 5.2E-16 99.4 4.3 49 271-324 12-61 (92)
16 3dpl_R Ring-box protein 1; ubi 99.2 1.5E-11 5.2E-16 104.4 4.2 50 270-323 35-99 (106)
17 2xeu_A Ring finger protein 4; 99.2 1.3E-11 4.6E-16 92.5 3.2 49 271-323 2-54 (64)
18 1chc_A Equine herpes virus-1 r 99.1 2.1E-11 7.1E-16 93.2 3.9 49 271-325 4-52 (68)
19 1t1h_A Gspef-atpub14, armadill 99.1 1.4E-11 4.7E-16 96.8 2.1 47 271-323 7-53 (78)
20 2csy_A Zinc finger protein 183 99.1 4E-11 1.4E-15 95.1 4.8 47 271-324 14-60 (81)
21 4ayc_A E3 ubiquitin-protein li 99.1 1.6E-11 5.5E-16 107.2 2.6 48 271-325 52-99 (138)
22 2ecy_A TNF receptor-associated 99.1 3.1E-11 1E-15 92.2 3.8 48 271-324 14-61 (66)
23 1g25_A CDK-activating kinase a 99.1 4E-11 1.4E-15 91.3 4.2 49 271-323 2-53 (65)
24 2ysl_A Tripartite motif-contai 99.1 3.1E-11 1.1E-15 93.3 3.5 50 271-324 19-68 (73)
25 2ysj_A Tripartite motif-contai 99.1 5.5E-11 1.9E-15 89.9 4.7 45 271-319 19-63 (63)
26 3fl2_A E3 ubiquitin-protein li 99.1 2.5E-11 8.7E-16 103.7 2.9 49 271-325 51-99 (124)
27 2ct2_A Tripartite motif protei 99.1 8.3E-11 2.8E-15 93.6 5.4 52 271-323 14-66 (88)
28 2y43_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 98.1 3.9 49 271-325 21-69 (99)
29 3lrq_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 99.6 2.7 49 271-324 21-69 (100)
30 2ckl_B Ubiquitin ligase protei 99.1 1.1E-10 3.6E-15 104.4 5.2 51 271-326 53-103 (165)
31 4ap4_A E3 ubiquitin ligase RNF 99.1 4E-11 1.4E-15 101.4 2.3 48 271-323 6-58 (133)
32 2kr4_A Ubiquitin conjugation f 99.0 1.2E-10 4.2E-15 94.4 4.5 48 271-325 13-60 (85)
33 2ecn_A Ring finger protein 141 99.0 2.6E-11 9E-16 93.3 0.3 46 271-324 14-59 (70)
34 2ecw_A Tripartite motif-contai 99.0 1.9E-10 6.6E-15 90.4 4.7 50 271-323 18-69 (85)
35 2ckl_A Polycomb group ring fin 99.0 1.2E-10 4.2E-15 97.1 3.6 49 271-325 14-62 (108)
36 2ecj_A Tripartite motif-contai 99.0 9.9E-11 3.4E-15 86.4 2.6 45 271-319 14-58 (58)
37 4a0k_B E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 103.4 0.4 49 271-323 47-110 (117)
38 1z6u_A NP95-like ring finger p 99.0 1.2E-10 4E-15 103.9 2.9 50 271-326 77-126 (150)
39 2egp_A Tripartite motif-contai 99.0 5.6E-11 1.9E-15 93.0 0.5 51 271-324 11-64 (79)
40 2yu4_A E3 SUMO-protein ligase 99.0 3.5E-10 1.2E-14 93.1 5.2 50 270-322 5-59 (94)
41 2ecv_A Tripartite motif-contai 99.0 2E-10 6.7E-15 90.3 3.5 51 271-324 18-70 (85)
42 3l11_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 97.7 2.4 50 270-325 13-62 (115)
43 1wgm_A Ubiquitin conjugation f 99.0 2.6E-10 8.9E-15 95.2 3.8 48 271-325 21-69 (98)
44 2kre_A Ubiquitin conjugation f 99.0 2.1E-10 7.3E-15 96.0 3.2 48 271-325 28-75 (100)
45 3hct_A TNF receptor-associated 99.0 2.7E-10 9.3E-15 96.8 3.5 49 271-325 17-65 (118)
46 1jm7_A BRCA1, breast cancer ty 98.9 3.2E-10 1.1E-14 94.2 3.3 50 271-324 20-69 (112)
47 2d8s_A Cellular modulator of i 98.9 3.7E-10 1.3E-14 91.3 3.2 50 271-323 14-68 (80)
48 2c2l_A CHIP, carboxy terminus 98.9 1.2E-09 4E-14 103.1 6.3 50 270-325 206-255 (281)
49 1rmd_A RAG1; V(D)J recombinati 98.9 7.3E-10 2.5E-14 93.4 3.8 49 271-325 22-70 (116)
50 2vje_A E3 ubiquitin-protein li 98.9 6.2E-10 2.1E-14 85.7 2.3 54 270-328 6-60 (64)
51 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.8E-14 91.9 3.2 49 271-323 71-123 (133)
52 1e4u_A Transcriptional repress 98.8 1E-09 3.4E-14 88.2 2.1 51 271-325 10-62 (78)
53 1bor_A Transcription factor PM 98.8 8E-10 2.8E-14 82.6 0.3 43 271-323 5-47 (56)
54 1jm7_B BARD1, BRCA1-associated 98.8 7.8E-10 2.7E-14 93.8 0.3 44 271-323 21-65 (117)
55 2vje_B MDM4 protein; proto-onc 98.8 1.9E-09 6.4E-14 82.7 1.9 53 271-328 6-59 (63)
56 3knv_A TNF receptor-associated 98.7 2.2E-09 7.4E-14 94.9 1.3 47 271-323 30-76 (141)
57 2f42_A STIP1 homology and U-bo 98.7 1E-08 3.6E-13 94.6 5.5 50 270-325 104-153 (179)
58 1wim_A KIAA0161 protein; ring 98.7 1.4E-08 4.6E-13 83.0 5.5 69 271-340 4-79 (94)
59 4ic3_A E3 ubiquitin-protein li 98.7 1.7E-09 5.9E-14 85.1 0.0 46 271-327 23-69 (74)
60 3hcs_A TNF receptor-associated 98.7 7.3E-09 2.5E-13 92.8 3.5 50 270-325 16-65 (170)
61 2y1n_A E3 ubiquitin-protein li 98.6 1.4E-08 4.9E-13 103.6 4.0 48 272-325 332-379 (389)
62 2ecg_A Baculoviral IAP repeat- 98.6 8.4E-09 2.9E-13 81.1 1.5 46 271-327 24-70 (75)
63 2ct0_A Non-SMC element 1 homol 98.6 2.7E-08 9.3E-13 79.7 3.6 49 271-323 14-62 (74)
64 2ea5_A Cell growth regulator w 98.4 9.7E-08 3.3E-12 74.4 3.4 48 271-329 14-62 (68)
65 2yho_A E3 ubiquitin-protein li 98.3 4.6E-08 1.6E-12 78.3 -0.7 47 271-328 17-64 (79)
66 3htk_C E3 SUMO-protein ligase 98.3 3.3E-07 1.1E-11 89.3 5.1 49 271-323 180-230 (267)
67 2bay_A PRE-mRNA splicing facto 98.3 3.6E-07 1.2E-11 70.1 2.7 44 273-323 4-48 (61)
68 3t6p_A Baculoviral IAP repeat- 98.2 1.3E-07 4.6E-12 95.0 -0.5 47 271-328 294-341 (345)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.4E-06 4.9E-11 66.6 4.0 48 271-323 5-57 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 97.9 1.5E-06 5.2E-11 87.8 1.0 54 271-324 307-372 (381)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.3E-05 4.5E-10 67.7 4.2 48 274-326 3-50 (101)
72 3nw0_A Non-structural maintena 96.5 0.0011 3.6E-08 63.5 2.7 48 271-322 179-226 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.3 0.0092 3.2E-07 48.5 3.1 35 271-305 2-36 (101)
74 2ffw_A Midline-1; B-BOX, ring 92.9 0.047 1.6E-06 43.4 2.3 49 357-409 26-77 (78)
75 2lri_C Autoimmune regulator; Z 91.6 0.069 2.3E-06 41.5 1.8 50 271-323 11-60 (66)
76 3lqh_A Histone-lysine N-methyl 90.2 0.092 3.1E-06 48.4 1.5 53 272-324 2-65 (183)
77 2k16_A Transcription initiatio 88.9 0.048 1.6E-06 42.6 -1.2 51 271-321 17-67 (75)
78 1f62_A Transcription factor WS 86.4 0.23 7.8E-06 35.9 1.2 48 274-321 2-49 (51)
79 3m62_A Ubiquitin conjugation f 84.8 0.65 2.2E-05 52.4 4.4 49 270-325 889-938 (968)
80 2l5u_A Chromodomain-helicase-D 84.6 0.36 1.2E-05 36.5 1.6 49 270-321 9-57 (61)
81 1we9_A PHD finger family prote 84.5 0.14 4.7E-06 38.7 -0.8 52 271-322 5-58 (64)
82 1mm2_A MI2-beta; PHD, zinc fin 81.9 0.23 7.7E-06 37.6 -0.5 49 271-322 8-56 (61)
83 2ysm_A Myeloid/lymphoid or mix 81.7 0.32 1.1E-05 40.5 0.3 50 271-320 6-55 (111)
84 1wep_A PHF8; structural genomi 81.7 1.1 3.6E-05 35.4 3.3 52 271-323 11-64 (79)
85 1weu_A Inhibitor of growth fam 81.3 0.41 1.4E-05 39.5 0.8 49 271-323 35-86 (91)
86 2yql_A PHD finger protein 21A; 80.7 0.16 5.6E-06 37.6 -1.6 48 271-321 8-55 (56)
87 2lv9_A Histone-lysine N-methyl 80.2 0.77 2.6E-05 37.9 2.1 51 271-323 27-77 (98)
88 3o36_A Transcription intermedi 79.6 0.32 1.1E-05 43.9 -0.4 49 271-322 3-51 (184)
89 1wen_A Inhibitor of growth fam 79.4 0.6 2.1E-05 36.5 1.2 49 271-323 15-66 (71)
90 2lbm_A Transcriptional regulat 79.0 3.6 0.00012 36.5 6.2 48 271-321 62-116 (142)
91 2puy_A PHD finger protein 21A; 78.3 0.24 8.4E-06 37.1 -1.4 47 271-320 4-50 (60)
92 1weo_A Cellulose synthase, cat 78.0 2.4 8.2E-05 35.1 4.4 51 271-324 15-69 (93)
93 2ko5_A Ring finger protein Z; 77.4 0.46 1.6E-05 39.8 -0.1 44 271-323 27-71 (99)
94 3u5n_A E3 ubiquitin-protein li 76.9 0.38 1.3E-05 44.3 -0.7 49 271-322 6-54 (207)
95 1wil_A KIAA1045 protein; ring 76.8 1.3 4.4E-05 36.4 2.4 50 271-321 14-75 (89)
96 2e6r_A Jumonji/ARID domain-con 76.2 0.23 7.8E-06 40.7 -2.2 51 270-320 14-64 (92)
97 1xwh_A Autoimmune regulator; P 75.5 0.3 1E-05 37.4 -1.5 48 271-321 7-54 (66)
98 3c6w_A P28ING5, inhibitor of g 72.5 0.69 2.4E-05 34.9 -0.2 47 271-321 8-57 (59)
99 2yt5_A Metal-response element- 72.3 0.45 1.5E-05 36.0 -1.3 52 271-322 5-61 (66)
100 1wev_A Riken cDNA 1110020M19; 71.9 0.25 8.7E-06 40.1 -3.0 51 271-321 15-71 (88)
101 2ro1_A Transcription intermedi 71.4 0.63 2.2E-05 42.6 -0.8 48 272-322 2-49 (189)
102 3v43_A Histone acetyltransfera 71.4 3.4 0.00012 34.5 3.8 49 272-320 5-62 (112)
103 2vnf_A ING 4, P29ING4, inhibit 70.6 0.77 2.6E-05 34.6 -0.3 47 271-321 9-58 (60)
104 1wem_A Death associated transc 68.7 1.2 4E-05 34.7 0.4 50 271-321 15-69 (76)
105 3v43_A Histone acetyltransfera 68.6 1 3.5E-05 37.7 0.0 49 273-321 62-111 (112)
106 1fp0_A KAP-1 corepressor; PHD 68.1 0.86 3E-05 37.4 -0.6 48 271-321 24-71 (88)
107 2g6q_A Inhibitor of growth pro 67.7 1.1 3.6E-05 34.2 -0.1 48 271-322 10-60 (62)
108 2ysm_A Myeloid/lymphoid or mix 64.2 0.84 2.9E-05 37.9 -1.4 48 274-321 56-103 (111)
109 2ri7_A Nucleosome-remodeling f 64.1 1.9 6.5E-05 38.2 0.8 50 271-321 7-58 (174)
110 2cs3_A Protein C14ORF4, MY039 63.4 9 0.00031 31.3 4.6 45 271-318 14-63 (93)
111 3asl_A E3 ubiquitin-protein li 63.3 1.6 5.3E-05 34.0 0.1 48 274-321 20-68 (70)
112 3o70_A PHD finger protein 13; 62.7 1.1 3.6E-05 34.8 -1.0 49 271-321 18-66 (68)
113 2e6s_A E3 ubiquitin-protein li 62.1 1.4 4.7E-05 35.0 -0.4 48 274-321 28-76 (77)
114 2kgg_A Histone demethylase jar 61.6 1.4 4.8E-05 32.1 -0.4 47 274-320 4-52 (52)
115 3ql9_A Transcriptional regulat 60.8 16 0.00056 31.7 6.1 55 271-330 56-117 (129)
116 1wee_A PHD finger family prote 59.6 1.5 5.1E-05 33.9 -0.6 50 271-321 15-65 (72)
117 3shb_A E3 ubiquitin-protein li 59.2 1.5 5E-05 34.9 -0.7 48 274-321 28-76 (77)
118 1wew_A DNA-binding family prot 58.3 2.1 7E-05 33.7 -0.0 51 271-322 15-72 (78)
119 2jmi_A Protein YNG1, ING1 homo 56.9 1.9 6.5E-05 35.4 -0.4 46 271-320 25-74 (90)
120 2yw8_A RUN and FYVE domain-con 54.3 7 0.00024 30.9 2.5 37 268-304 15-52 (82)
121 2l43_A N-teminal domain from h 51.8 3.1 0.00011 33.7 0.0 49 271-321 24-74 (88)
122 2kwj_A Zinc finger protein DPF 50.8 1.6 5.3E-05 36.8 -2.0 48 273-320 59-106 (114)
123 3ask_A E3 ubiquitin-protein li 50.2 2.7 9.3E-05 40.0 -0.6 48 274-321 176-224 (226)
124 4gne_A Histone-lysine N-methyl 49.7 6.3 0.00022 33.2 1.6 46 270-320 13-60 (107)
125 2kwj_A Zinc finger protein DPF 49.6 3 0.0001 35.0 -0.4 48 273-320 2-59 (114)
126 2ku3_A Bromodomain-containing 46.7 6 0.00021 30.8 1.0 49 271-321 15-65 (71)
127 1joc_A EEA1, early endosomal a 44.2 12 0.00042 31.9 2.6 37 268-304 65-102 (125)
128 3t7l_A Zinc finger FYVE domain 43.7 13 0.00046 29.9 2.6 35 271-305 19-54 (90)
129 1y02_A CARP2, FYVE-ring finger 43.3 3.3 0.00011 35.7 -1.2 50 268-321 15-65 (120)
130 1z2q_A LM5-1; membrane protein 42.5 14 0.00049 29.2 2.6 37 268-304 17-54 (84)
131 1iml_A CRIP, cysteine rich int 41.2 12 0.00041 28.2 1.9 36 274-323 2-37 (76)
132 1zfo_A LAsp-1; LIM domain, zin 40.8 13 0.00044 24.2 1.7 28 273-302 4-31 (31)
133 1wfk_A Zinc finger, FYVE domai 40.7 17 0.00057 29.3 2.7 34 271-304 8-42 (88)
134 1x4u_A Zinc finger, FYVE domai 40.3 14 0.00047 29.2 2.2 35 270-304 12-47 (84)
135 2cu8_A Cysteine-rich protein 2 39.4 16 0.00055 27.4 2.3 39 271-323 8-46 (76)
136 2dj7_A Actin-binding LIM prote 38.8 14 0.00049 28.5 2.0 38 271-322 14-51 (80)
137 3mjh_B Early endosome antigen 38.5 8 0.00027 26.4 0.4 14 270-283 3-16 (34)
138 1vfy_A Phosphatidylinositol-3- 38.1 19 0.00064 27.8 2.6 32 273-304 12-44 (73)
139 2vpb_A Hpygo1, pygopus homolog 37.6 20 0.00068 27.3 2.6 50 271-320 7-64 (65)
140 2d8x_A Protein pinch; LIM doma 36.3 19 0.00064 26.5 2.3 37 271-322 4-40 (70)
141 1x4i_A Inhibitor of growth pro 36.0 11 0.00036 29.3 0.8 46 271-320 5-53 (70)
142 1z60_A TFIIH basal transcripti 35.9 13 0.00046 28.2 1.4 43 274-320 17-59 (59)
143 3o7a_A PHD finger protein 13 v 34.1 5.9 0.0002 28.7 -0.9 44 277-321 8-51 (52)
144 1dvp_A HRS, hepatocyte growth 33.0 17 0.00058 33.4 1.9 34 271-304 160-194 (220)
145 2cur_A Skeletal muscle LIM-pro 32.8 21 0.00072 26.2 2.0 36 272-322 5-40 (69)
146 1x62_A C-terminal LIM domain p 32.6 29 0.00098 26.3 2.8 37 271-322 14-50 (79)
147 3i2d_A E3 SUMO-protein ligase 32.6 26 0.00088 35.6 3.2 48 273-323 250-298 (371)
148 2dar_A PDZ and LIM domain prot 32.4 17 0.00059 28.3 1.6 38 271-323 24-61 (90)
149 2co8_A NEDD9 interacting prote 31.6 24 0.00081 27.2 2.2 38 271-322 14-51 (82)
150 3zyq_A Hepatocyte growth facto 31.0 21 0.0007 33.2 2.1 34 271-304 163-197 (226)
151 3kv5_D JMJC domain-containing 30.6 8.3 0.00028 40.3 -0.8 50 271-321 36-87 (488)
152 2rsd_A E3 SUMO-protein ligase 30.5 4.2 0.00014 31.1 -2.3 49 271-320 9-63 (68)
153 1x64_A Alpha-actinin-2 associa 30.4 28 0.00095 27.0 2.5 38 271-323 24-61 (89)
154 3mpx_A FYVE, rhogef and PH dom 30.4 11 0.00037 37.5 0.0 50 271-320 374-427 (434)
155 2zet_C Melanophilin; complex, 29.8 24 0.00082 31.3 2.2 49 270-321 66-116 (153)
156 1v6g_A Actin binding LIM prote 29.7 26 0.0009 26.5 2.2 36 273-323 16-51 (81)
157 2l4z_A DNA endonuclease RBBP8, 29.3 28 0.00097 29.2 2.5 39 271-323 60-98 (123)
158 1m3v_A FLIN4, fusion of the LI 28.8 44 0.0015 27.5 3.6 11 294-304 54-64 (122)
159 1x61_A Thyroid receptor intera 26.9 32 0.0011 25.3 2.1 28 272-301 5-33 (72)
160 1wig_A KIAA1808 protein; LIM d 26.8 34 0.0012 25.7 2.3 37 272-323 5-41 (73)
161 1nyp_A Pinch protein; LIM doma 26.6 29 0.00098 25.2 1.8 37 272-323 5-41 (66)
162 2d8y_A Eplin protein; LIM doma 25.9 33 0.0011 26.7 2.2 38 271-322 14-51 (91)
163 1wyh_A SLIM 2, skeletal muscle 25.8 36 0.0012 25.0 2.2 37 272-322 5-42 (72)
164 2jne_A Hypothetical protein YF 25.2 2.4 8.1E-05 35.7 -4.8 39 273-323 33-71 (101)
165 1x4l_A Skeletal muscle LIM-pro 24.7 37 0.0013 25.0 2.2 38 271-322 4-44 (72)
166 2d8v_A Zinc finger FYVE domain 24.5 44 0.0015 26.1 2.5 31 271-305 7-38 (67)
167 2dlo_A Thyroid receptor-intera 24.1 34 0.0012 25.9 1.9 36 272-322 15-50 (81)
168 2d8z_A Four and A half LIM dom 23.9 43 0.0015 24.4 2.4 36 272-322 5-40 (70)
169 2xb1_A Pygopus homolog 2, B-ce 23.8 31 0.0011 28.5 1.6 50 273-322 4-61 (105)
170 1x4k_A Skeletal muscle LIM-pro 23.3 40 0.0014 24.7 2.1 37 273-323 6-43 (72)
171 1x68_A FHL5 protein; four-and- 23.0 38 0.0013 25.4 1.9 37 273-323 6-45 (76)
172 4fo9_A E3 SUMO-protein ligase 22.3 51 0.0017 33.3 3.2 48 273-323 216-264 (360)
173 2cor_A Pinch protein; LIM doma 22.2 39 0.0013 25.7 1.9 38 271-323 14-51 (79)
174 1zbd_B Rabphilin-3A; G protein 22.1 34 0.0012 29.7 1.6 51 270-320 53-105 (134)
175 1x3h_A Leupaxin; paxillin fami 21.4 43 0.0015 25.1 2.0 35 273-322 16-50 (80)
176 1x6a_A LIMK-2, LIM domain kina 21.2 41 0.0014 25.4 1.8 36 273-323 16-51 (81)
177 2egq_A FHL1 protein; LIM domai 21.0 43 0.0015 24.9 1.9 37 273-323 16-56 (77)
178 2yt9_A Zinc finger-containing 20.9 1.8E+02 0.0063 21.2 5.5 19 312-330 64-82 (95)
179 3kv4_A PHD finger protein 8; e 20.7 21 0.00071 37.0 -0.0 49 273-321 5-55 (447)
180 2cup_A Skeletal muscle LIM-pro 20.5 66 0.0023 25.1 3.0 28 272-301 5-33 (101)
181 2ee8_A Protein ODD-skipped-rel 20.3 2E+02 0.0069 21.5 5.8 18 313-330 73-90 (106)
182 2gmg_A Hypothetical protein PF 20.2 39 0.0013 28.6 1.5 24 291-323 71-94 (105)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=110.07 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=56.0
Q ss_pred cccCCCHHHHhhhccccCCC---CCccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 248 ESLGFNHEKIARSCSRVSAS---SSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 248 es~Gl~~e~I~~~~~r~s~s---ps~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
...|+..+.|+.+....... ...+...|+||++.|.....+..|+|||+||..||.+|+.. ...||+||..+
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 87 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMF 87 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBS
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccC
Confidence 55678888888765432211 12256789999999986777778999999999999999985 67999999755
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.6e-13 Score=103.79 Aligned_cols=53 Identities=21% Similarity=0.497 Sum_probs=44.8
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCccch
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 327 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~ 327 (427)
+...|+||++.|.....+.+|+|||+||..||.+|+.. ...||+||..+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSCC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCccccccc
Confidence 56789999999986666677899999999999999986 569999998765443
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=9.6e-13 Score=103.05 Aligned_cols=50 Identities=26% Similarity=0.663 Sum_probs=43.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|.....+..|+|||+||..||.+|+.. ...||+||..+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCC
Confidence 56789999999986666777999999999999999986 679999997653
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=99.54 Aligned_cols=50 Identities=28% Similarity=0.679 Sum_probs=42.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|.....+..++|||+||..||.+|+.. ...||+||..+.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcccc
Confidence 56689999999975556667999999999999999987 568999997653
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.28 E-value=3.6e-12 Score=106.94 Aligned_cols=53 Identities=25% Similarity=0.457 Sum_probs=40.7
Q ss_pred cccccccccccccccc---------------eeEEcCCCCcccHHHHHHHHHhcC-CCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELC---------------VVAVLTCGHLYHADCLENITAEIN-KYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~---------------vv~~LpCGHvFH~~CI~~Wl~~~~-~~~~~CPvCR~~~ 323 (427)
.+..|+||++.|.... ++..++|||+||.+||..|+.... .....||+||..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4568999999997321 334689999999999999996432 2467999999754
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.28 E-value=1.2e-12 Score=96.29 Aligned_cols=49 Identities=33% Similarity=0.710 Sum_probs=41.7
Q ss_pred cccccccccccccccceeEEcC-CCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp-CGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.....+..++ |||+||..||.+|+.. ...||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEe
Confidence 5668999999998666566687 9999999999999975 67999999754
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.26 E-value=2.2e-12 Score=101.41 Aligned_cols=49 Identities=29% Similarity=0.586 Sum_probs=42.3
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.....+.+|+|||+||..||.+|+.. ...||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 56789999999985556667899999999999999975 67999999765
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=4.4e-12 Score=92.99 Aligned_cols=49 Identities=33% Similarity=0.723 Sum_probs=40.9
Q ss_pred cccccccccccccc-cceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~-~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.+ ...+..++|||+||..||.+|+.. ...||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcC
Confidence 56789999999963 234566899999999999999997 58999999754
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.4e-12 Score=96.03 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=41.1
Q ss_pred ccccccccccccccc----ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~----~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|.+. ..+..++|||+||..||..|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccC
Confidence 667899999999832 22245899999999999999986 679999997654
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.3e-12 Score=100.78 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=38.6
Q ss_pred ccccccccccccccc-----------cceeEEc-CCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 270 VDMQTCGVCSKLLSE-----------LCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 270 ~e~~~C~ICld~l~~-----------~~vv~~L-pCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+++..|+||++.|.+ ...+.++ +|||+||.+||.+|+.. ...||+||..+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 74 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDW 74 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCc
Confidence 366778888888852 2333345 59999999999999986 67999999764
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.19 E-value=7.1e-12 Score=96.24 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=40.7
Q ss_pred ccccccccccccccc----ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~----~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.+. .....++|||+||..||.+|+.. ...||+||..+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCcc
Confidence 667899999999831 22355899999999999999986 67999999764
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=5.3e-12 Score=97.99 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=41.4
Q ss_pred CccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 269 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 269 s~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
..+...|+||++.|. .+++ ++|||+||..||.+|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~--~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCV-HPVS--LPCKHVFCYLCVKGASWL----GKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCS-SEEE--ETTTEEEEHHHHHHCTTC----SSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccC-CCEE--ccCCCHHHHHHHHHHHHC----CCcCcCcCchhC
Confidence 346778999999998 5655 899999999999999985 589999997653
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=95.15 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=40.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. ++++ .++|||+||..||..|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYLI-DATT-ITECLHTFCKSCIVRHFYY----SNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCCS-SCEE-CSSSCCEECHHHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCChHHH-CcCE-ECCCCCHHHHHHHHHHHHc----CCcCCCcCcccC
Confidence 5678999999998 5554 2399999999999999986 689999998653
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=96.76 Aligned_cols=50 Identities=26% Similarity=0.699 Sum_probs=42.0
Q ss_pred cccccccccccccccceeEEcC-CCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp-CGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. .+++ ++ |||+||..||..|+... ....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT-DAVV--IPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT-TCEE--CSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh-CCeE--cCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCC
Confidence 6679999999999 7776 89 99999999999999862 13699999986533
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=99.44 Aligned_cols=49 Identities=27% Similarity=0.712 Sum_probs=42.0
Q ss_pred cccccccccccccccceeEEcC-CCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp-CGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. +|++ |+ |||+||..||..|+... ....||+||..+.
T Consensus 12 ~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT-DAVV--IPCCGNSYCDECIRTALLES--DEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS-SCEE--CTTTCCEECHHHHHHHHHHC--TTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc-CceE--CCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCcCC
Confidence 6779999999998 7876 89 99999999999999752 2479999998763
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.5e-11 Score=104.39 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=41.1
Q ss_pred cccccccccccccccc---------------ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 270 VDMQTCGVCSKLLSEL---------------CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~---------------~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+++..|+||++.|.+. ..+..++|||.||..||.+||.. ...||+||..+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~ 99 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW 99 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcc
Confidence 3667899999998833 13556899999999999999985 78999999864
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=92.50 Aligned_cols=49 Identities=27% Similarity=0.703 Sum_probs=40.2
Q ss_pred ccccccccccccccc----ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~----~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.+. ..+..++|||+||..||.+|+.. ...||+||..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccC
Confidence 456899999999832 22345899999999999999986 67999999764
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=2.1e-11 Score=93.23 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=40.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.+. .++ ..++|||.||..||.+|+.. ...||+||..+..
T Consensus 4 ~~~~C~IC~~~~~-~~~-~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS-NYS-MALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC-SCE-EETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc-CCc-EecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 4568999999998 432 45899999999999999986 6799999976643
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=1.4e-11 Score=96.80 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=41.3
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|. +|++ ++|||+||..||..|+.. ....||+|+...
T Consensus 7 ~~~~C~IC~~~~~-~Pv~--~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMK-DPVI--VSTGQTYERSSIQKWLDA---GHKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCS-SEEE--ETTTEEEEHHHHHHHHTT---TCCBCTTTCCBC
T ss_pred ccCCCCCcccccc-CCEE--cCCCCeecHHHHHHHHHH---CcCCCCCCcCCC
Confidence 6789999999998 7776 799999999999999974 267899999865
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=95.10 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=41.1
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. .+++ ++|||+||..||..|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ-NPVV--TKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC-SEEE--CTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc-CeeE--ccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 5568999999998 6765 899999999999999986 679999998754
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=1.6e-11 Score=107.23 Aligned_cols=48 Identities=25% Similarity=0.633 Sum_probs=41.2
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
++..|+||++.|. .+++ ++|||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~C~iC~~~~~-~~~~--~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFI-EAVT--LNCAHSFCSYCINEWMKR----KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCS-SEEE--ETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccC-CceE--CCCCCCccHHHHHHHHHc----CCcCCCCCCcCCC
Confidence 4467999999998 6765 899999999999999985 6889999987644
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.1e-11 Score=92.24 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=41.2
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.+. .+++ ++|||+||..||.+|+.. ....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-SPKQ--TECGHRFCESCMAALLSS---SSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCCEES-SCCC--CSSSCCCCHHHHHHHHTT---SSCCCTTTCCCCC
T ss_pred cCCCCCCCChHhc-CeeE--CCCCCHHHHHHHHHHHHh---CcCCCCCCCcCCC
Confidence 6678999999998 7776 899999999999999963 3678999998653
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=4e-11 Score=91.31 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=39.7
Q ss_pred cccccccccc-ccccccee--EEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSK-LLSELCVV--AVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld-~l~~~~vv--~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
++..|+||++ .|. .++. ..++|||+||..||.+|+.+ ....||+||..+
T Consensus 2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCcc
Confidence 5678999999 787 4532 34799999999999999875 257899999765
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.1e-11 Score=93.26 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=41.1
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. .+++ ++|||+||..||..|+... .....||+||..+.
T Consensus 19 ~~~~C~IC~~~~~-~~~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQ-KPVT--IDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCS-SEEE--CTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccC-CeEE--cCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCC
Confidence 5678999999998 6666 7999999999999999731 23679999998653
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.5e-11 Score=89.85 Aligned_cols=45 Identities=27% Similarity=0.641 Sum_probs=38.3
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvC 319 (427)
+...|+||++.|. .+++ |+|||+||..||.+|+... .....||+|
T Consensus 19 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-KPVT--IDCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-SCEE--CTTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred cCCCCCcCCchhC-CeEE--eCCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 5678999999998 6766 7999999999999999852 236789998
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=2.5e-11 Score=103.69 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=42.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. .+++ ++|||.||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPIT--TVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc-CcEE--eeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence 5578999999999 7766 899999999999999984 35699999987654
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.3e-11 Score=93.64 Aligned_cols=52 Identities=27% Similarity=0.604 Sum_probs=41.0
Q ss_pred cccccccccccccccce-eEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~v-v~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.+... ...|+|||+||..||.+|+.... ....||+||...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcc
Confidence 56789999999984221 34489999999999999998621 247999999754
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.08 E-value=4.6e-11 Score=98.12 Aligned_cols=49 Identities=22% Similarity=0.756 Sum_probs=40.8
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. .+++ .++|||.||..||..|+.. ...||+||..+..
T Consensus 21 ~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN-IAMI-IPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS-SEEE-CTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhC-CcCE-ECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 4568999999998 5655 2389999999999999985 6799999987643
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=3.7e-11 Score=99.60 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=40.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. .++ ..++|||+||..||..|+... ...||+||..+.
T Consensus 21 ~~~~C~IC~~~~~-~p~-~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLR-DAR-LCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCS-SEE-ECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCC
T ss_pred CCCCCccCCcccc-Ccc-ccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCC
Confidence 5678999999998 443 238999999999999999972 379999998753
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=1.1e-10 Score=104.44 Aligned_cols=51 Identities=22% Similarity=0.484 Sum_probs=41.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 326 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 326 (427)
+...|+||++.|. .+++ .++|||+||..||..|+.. ....||+||..+...
T Consensus 53 ~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLK-NTMT-TKECLHRFCADCIITALRS---GNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCS-SEEE-ETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhh-CcCE-eCCCCChhHHHHHHHHHHh---CcCCCCCCCCcCCCc
Confidence 5568999999999 5544 3499999999999999985 267899999876443
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=4e-11 Score=101.41 Aligned_cols=48 Identities=23% Similarity=0.630 Sum_probs=40.3
Q ss_pred cccccccccccccccc-----eeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELC-----VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~-----vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|. .+ .+..++|||+||..||.+|+.. ...||+|+..+
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHH-HHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBC
T ss_pred CCCCCcccChhhh-CccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcC
Confidence 6678999999998 34 2245899999999999999985 67999999865
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.04 E-value=1.2e-10 Score=94.37 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=43.2
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. +||+ ++|||+|+..||..|+.. ...||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~-dPV~--~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT-DPVR--LPSGTVMDRSIILRHLLN----SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred hheECcccCchhc-CCeE--CCCCCEECHHHHHHHHhc----CCCCCCCcCCCCh
Confidence 7789999999999 8988 899999999999999986 6799999987543
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.6e-11 Score=93.32 Aligned_cols=46 Identities=24% Similarity=0.740 Sum_probs=39.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.+.+ ..++|||.||..||.+|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC----cCcCCCcCCccc
Confidence 56789999999984 34899999999999999884 789999997553
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.02 E-value=1.9e-10 Score=90.40 Aligned_cols=50 Identities=26% Similarity=0.522 Sum_probs=41.4
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhc--CCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI--NKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~--~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|. .+++ ++|||+||..||..|+... ......||+||...
T Consensus 18 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLK-EPVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCS-SCEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhC-ccee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 5678999999998 6765 8999999999999999862 12367999999765
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.2e-10 Score=97.15 Aligned_cols=49 Identities=18% Similarity=0.533 Sum_probs=41.3
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. .+++ .++|||+||..||..|+.. ...||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI-DATT-IIECLHSFCKTCIVRYLET----SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS-SEEE-ETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh-CcCE-eCCCCChhhHHHHHHHHHh----CCcCcCCCccccc
Confidence 5678999999998 5655 2399999999999999985 5899999987543
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=9.9e-11 Score=86.42 Aligned_cols=45 Identities=31% Similarity=0.764 Sum_probs=37.8
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvC 319 (427)
+...|+||++.|. .+++ |+|||+||..||.+|+... .....||+|
T Consensus 14 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK-EPVI--IECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS-SCCC--CSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccC-ccEe--CCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 5678999999998 6766 8999999999999997631 136899998
No 37
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.99 E-value=4.7e-11 Score=103.39 Aligned_cols=49 Identities=24% Similarity=0.622 Sum_probs=1.1
Q ss_pred cccccccccccccccc---------------eeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELC---------------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~---------------vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+.+.|+||++.|.+.. .+..++|||.||.+||.+||.. ...||+||..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW 110 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCee
Confidence 5678999999997321 2334689999999999999986 68999999764
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=103.88 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=42.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 326 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 326 (427)
+...|+||++.|. .+++ ++|||+||..||..|+.. ....||+||..+...
T Consensus 77 ~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVT--TECFHNVCKDCLQRSFKA---QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc-CCEE--cCCCCchhHHHHHHHHHh---CCCcCCCCCccCCCC
Confidence 5578999999998 7777 899999999999999985 246899999876543
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.99 E-value=5.6e-11 Score=92.98 Aligned_cols=51 Identities=29% Similarity=0.620 Sum_probs=41.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhc---CCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI---NKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~---~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. .+++ |+|||+||..||..|+... ......||+||..+.
T Consensus 11 ~~~~C~IC~~~~~-~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLT-EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECS-SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccC-CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 6678999999998 6776 8999999999999998752 122678999998653
No 40
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=3.5e-10 Score=93.12 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=41.7
Q ss_pred ccccccccccccccccceeEEcC-CCCcccHHHHHHHHHhc--CCCCCCCCc--cccC
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEI--NKYDPACPV--CTLG 322 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~Lp-CGHvFH~~CI~~Wl~~~--~~~~~~CPv--CR~~ 322 (427)
.+...|+||++.|. +||+ ++ |||+|+..||..|+... ......||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~-dPV~--~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK-KPVK--NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS-SEEE--ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc-CCEE--cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 36789999999999 8888 85 99999999999999863 123579999 9855
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=90.35 Aligned_cols=51 Identities=31% Similarity=0.736 Sum_probs=41.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhc--CCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI--NKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~--~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. .+++ ++|||+||..||..|+... ......||+||..+.
T Consensus 18 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLT-QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCS-SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccC-Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 5678999999998 6766 8999999999999999861 223689999997653
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.97 E-value=1.4e-10 Score=97.65 Aligned_cols=50 Identities=24% Similarity=0.606 Sum_probs=42.3
Q ss_pred ccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
.++..|+||++.|. .+++ |+|||+||..||..|+.. ....||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVT--LPCNHTLCKPCFQSTVEK---ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEE--CTTSCEECHHHHCCCCCT---TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeE--cCCCCHHhHHHHHHHHhH---CcCCCCCCCcccCc
Confidence 36779999999998 7776 899999999999999864 35789999987643
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.96 E-value=2.6e-10 Score=95.18 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=43.1
Q ss_pred cccccccccccccccceeEEcCCC-CcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
++..|+||++.|. +||+ ++|| |+|+..||..|+.. ...||+|+..+..
T Consensus 21 ~~~~CpI~~~~m~-dPV~--~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC-DPVV--LPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc-CCeE--CCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 7789999999999 8988 9999 99999999999985 6799999987643
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.96 E-value=2.1e-10 Score=96.02 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=43.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. +||+ ++|||+|+..||..|+.. ...||+|+..+..
T Consensus 28 ~~~~CpI~~~~m~-dPV~--~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT-DPVR--LPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS-SEEE--ETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred HhhCCcCccCccc-CCeE--CCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 7889999999999 8988 899999999999999984 6899999987543
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.95 E-value=2.7e-10 Score=96.75 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=41.8
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. .+++ ++|||+||..||..|+... ...||+||..+..
T Consensus 17 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALR-EAVQ--TPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhc-CeEE--CCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence 6679999999998 6766 8999999999999999863 3499999987654
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3.2e-10 Score=94.24 Aligned_cols=50 Identities=20% Similarity=0.553 Sum_probs=40.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
+...|+||++.|. .+++ ++|||+||..||..|+.... ....||+|+..+.
T Consensus 20 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIK-EPVS--TKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCS-SCCB--CTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCC
T ss_pred CCCCCcccChhhc-CeEE--CCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCC
Confidence 4568999999998 6766 89999999999999998521 2368999998643
No 47
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.7e-10 Score=91.33 Aligned_cols=50 Identities=18% Similarity=0.465 Sum_probs=40.3
Q ss_pred cccccccccccccccceeEEcCCC-----CcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCG-----HLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCG-----HvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
++..|.||++.|.++..+ ++||+ |.||.+||++|+... ....||+|+..+
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCee
Confidence 567899999998744433 58996 999999999999873 136999999765
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=1.2e-09 Score=103.11 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=43.2
Q ss_pred ccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
.+...|+||++.|. +||+ ++|||+||..||..|+... ...||+|+.+...
T Consensus 206 ~~~~~c~i~~~~~~-dPv~--~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR-EPCI--TPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS-SEEE--CSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc-CCeE--CCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 37789999999999 8988 9999999999999999862 3459999987743
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.89 E-value=7.3e-10 Score=93.40 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=41.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
+...|+||++.|. .+++ ++|||+||..||..|+... ...||+||..+..
T Consensus 22 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVE--TSCKHLFCRICILRCLKVM---GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhc-CcEE--cCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCH
Confidence 4568999999998 6766 8999999999999999862 5689999987543
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.86 E-value=6.2e-10 Score=85.69 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=43.0
Q ss_pred ccccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccchH
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 328 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k 328 (427)
.++..|.||++.+. +.++..+||||. ||.+|+..|+.. ...||+||..+..+.+
T Consensus 6 ~~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 6 NAIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQMIVL 60 (64)
T ss_dssp GGGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCEEEE
T ss_pred CCcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhceEe
Confidence 46778999999987 454433499999 899999999875 6789999987765443
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.82 E-value=1.4e-09 Score=91.90 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=40.3
Q ss_pred ccccccccccccccc----ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~----~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|.+. .....++|||+||..||++|+.. ...||+||..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 123 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 123 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcC
Confidence 567899999999831 12245899999999999999987 67999999765
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=1e-09 Score=88.22 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=39.3
Q ss_pred cccccccccccccccceeEEcC--CCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp--CGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
++..|+||++.+...+. .++| |||.||..||..++.. ....||+||..+..
T Consensus 10 ~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCC
Confidence 66799999999863222 2344 9999999999998754 36899999986644
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=8e-10 Score=82.59 Aligned_cols=43 Identities=26% Similarity=0.539 Sum_probs=37.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|. .+++ |+|||+||..||..| ...||+||...
T Consensus 5 ~~~~C~IC~~~~~-~p~~--l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAK-CPKL--LPCLHTLCSGCLEAS-------GMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCB-CCSC--STTSCCSBTTTCSSS-------SSSCSSCCSSS
T ss_pred cCCCceEeCCccC-CeEE--cCCCCcccHHHHccC-------CCCCCcCCcEe
Confidence 5678999999999 6766 999999999999873 57899999764
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=7.8e-10 Score=93.78 Aligned_cols=44 Identities=27% Similarity=0.781 Sum_probs=38.8
Q ss_pred cccccccccccccccceeEEc-CCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~L-pCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|. .+++ + +|||+||..||..|+. ..||+|+..+
T Consensus 21 ~~~~C~IC~~~~~-~pv~--~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILR-EPVC--LGGCEHIFCSNCVSDCIG------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCS-SCBC--CCSSSCCBCTTTGGGGTT------TBCSSSCCBC
T ss_pred hCCCCCCCChHhh-CccE--eCCCCCHHHHHHHHHHhc------CCCcCCCCcC
Confidence 5678999999998 7776 7 9999999999999975 5899999865
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.76 E-value=1.9e-09 Score=82.75 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=42.4
Q ss_pred cccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccchH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 328 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k 328 (427)
....|.||++.+. +.++..+||||. ||.+|+..|... ...||+||.+...+.+
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 6 LLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQLVIK 59 (63)
T ss_dssp GGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCEEEE
T ss_pred cCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhceEE
Confidence 5678999999877 555544599998 999999999875 5799999987755443
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.72 E-value=2.2e-09 Score=94.87 Aligned_cols=47 Identities=26% Similarity=0.548 Sum_probs=40.3
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|+||++.|. .++. ++|||+||..||.+|+.. ....||+||.+.
T Consensus 30 ~~~~C~IC~~~~~-~pv~--~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLR-RPFQ--AQCGHRYCSFCLASILSS---GPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHGGG---SCEECHHHHHTT
T ss_pred cCcCCCCCChhhc-CcEE--CCCCCccCHHHHHHHHhc---CCCCCCCCCCcc
Confidence 6678999999999 7766 899999999999999975 246899999753
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.71 E-value=1e-08 Score=94.64 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=43.1
Q ss_pred ccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
.+...||||++.|. +||+ ++|||+|+..||..|+... ...||+|+.++..
T Consensus 104 p~~f~CPI~~elm~-DPV~--~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR-EPCI--TPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC-CCeE--CCCCCEECHHHHHHHHHhC---CCCCCCCcCCCCh
Confidence 47889999999999 8988 8999999999999999862 2379999987643
No 58
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=1.4e-08 Score=82.95 Aligned_cols=69 Identities=14% Similarity=0.343 Sum_probs=45.7
Q ss_pred ccccccccccccccccee-EEcCCCCcccHHHHHHHHHhc---C-CCCCCCCc--cccCCccchHHHHHHHHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVV-AVLTCGHLYHADCLENITAEI---N-KYDPACPV--CTLGEKKTHKLSERALKSEMES 340 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv-~~LpCGHvFH~~CI~~Wl~~~---~-~~~~~CPv--CR~~~~~~~kL~~~~l~~elel 340 (427)
+...|+||++.+. .++. ...+|||.||.+||.+++... . .....||. |+....-.....++.+..++..
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ 79 (94)
T 1wim_A 4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQ 79 (94)
T ss_dssp SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHH
T ss_pred CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHH
Confidence 5678999999998 4444 334799999999999988741 1 12468999 9976322333334444333333
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.70 E-value=1.7e-09 Score=85.12 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=38.1
Q ss_pred cccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccch
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH 327 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~ 327 (427)
+...|+||++.+. .++. +||||. ||..|+..| ..||+||..+....
T Consensus 23 ~~~~C~iC~~~~~-~~~~--~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVF--VPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBC-CEEE--ETTCCBCCCHHHHTTC--------SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCC-CEEE--cCCCChhHHHHhhhcC--------ccCCCcCcCccCcE
Confidence 5568999999988 5555 899999 999999887 58999998765543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.68 E-value=7.3e-09 Score=92.78 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=42.3
Q ss_pred ccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
.+...|+||++.|. .|+. ++|||+||..||.+|+... ...||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR-EAVQ--TPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc-CcEE--CCCCCHHHHHHHHHHHHhC---CCCCCCCccCcch
Confidence 36779999999998 7766 8999999999999999863 3599999987644
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.62 E-value=1.4e-08 Score=103.64 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=40.1
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
...|+||++.+. .+++ ++|||+||..||..|+.. ....||+||.....
T Consensus 332 ~~~C~ICle~~~-~pv~--lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-CEEE--ETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-CeEE--eCCCChhhHHHHHHHHhc---CCCCCCCCCCccCC
Confidence 368999999987 5555 899999999999999984 26799999986543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=8.4e-09 Score=81.12 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=37.1
Q ss_pred cccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccch
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH 327 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~ 327 (427)
+...|+||++.+. .++. +||||. ||..|+.. ...||+||..+....
T Consensus 24 ~~~~C~IC~~~~~-~~~~--~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVF--VPCGHLVTCKQCAEA--------VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCC-CBCC--SSSCCCCBCHHHHHH--------CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCC-CEEE--ecCCCHHHHHHHhhC--------CCCCccCCceecCcE
Confidence 4557999999988 6665 899999 99999953 468999998765543
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.7e-08 Score=79.66 Aligned_cols=49 Identities=27% Similarity=0.550 Sum_probs=38.4
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|+||.+.+.... ....|+|.||.+||.+||+.. ....||+|+...
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~w 62 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYW 62 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSCC
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCcC
Confidence 4568999999998333 234899999999999999752 137999999753
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=9.7e-08 Score=74.44 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=38.4
Q ss_pred cccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccchHH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHKL 329 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kL 329 (427)
+...|.||++.+. ..+. |||||. ||..|+.. ...||+||..+....++
T Consensus 14 ~~~~C~IC~~~~~-~~v~--~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-NWVL--LPCRHTCLCDGCVKY--------FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp CSSCCSSSSSSCC-CCEE--TTTTBCCSCTTHHHH--------CSSCTTTCCCCCCEECC
T ss_pred CCCCCCCcCcCCC-CEEE--ECCCChhhhHHHHhc--------CCCCCCCCcchhceEEe
Confidence 5678999999876 4444 999999 99999983 46899999887665544
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.34 E-value=4.6e-08 Score=78.34 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=37.3
Q ss_pred cccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccchH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 328 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k 328 (427)
+...|+||++.+. .++. +||||. ||..|+..| ..||+||..+....+
T Consensus 17 ~~~~C~IC~~~~~-~~v~--~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 17 EAMLCMVCCEEEI-NSTF--CPCGHTVCCESCAAQL--------QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HHTBCTTTSSSBC-CEEE--ETTCBCCBCHHHHTTC--------SBCTTTCCBCCEEEE
T ss_pred CCCEeEEeCcccC-cEEE--ECCCCHHHHHHHHHhc--------CcCCCCCchhhCeEE
Confidence 4567999999877 5544 899999 999999865 389999987655443
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.3e-07 Score=89.32 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=40.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCc--cccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV--CTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPv--CR~~~ 323 (427)
....||||++.|. +||+ .+.|||+||..||..|+.+. ....||+ |+..+
T Consensus 180 ~el~CPIcl~~f~-DPVt-s~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l 230 (267)
T 3htk_C 180 IELTCPITCKPYE-APLI-SRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVV 230 (267)
T ss_dssp CCSBCTTTSSBCS-SEEE-ESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEE
T ss_pred eeeECcCccCccc-CCee-eCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcC
Confidence 5678999999999 7876 34899999999999999752 2468999 99753
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=3.6e-07 Score=70.06 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=38.5
Q ss_pred cccccccccccccceeEEc-CCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~L-pCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..|+||++.+. +||+ + +|||+|...||++|+.+ +..||+++.+.
T Consensus 4 ~~CpIs~~~m~-dPV~--~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPR-RPVL--SPKSRTIFEKSLLEQYVKD----TGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCS-SEEE--ETTTTEEEEHHHHHHHHHH----HSBCTTTCCBC
T ss_pred EEecCCCCCCC-CCEE--eCCCCcEEcHHHHHHHHHh----CCCCcCCcCCC
Confidence 57999999999 7876 7 89999999999999986 45699999754
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=1.3e-07 Score=94.99 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=38.8
Q ss_pred cccccccccccccccceeEEcCCCCc-ccHHHHHHHHHhcCCCCCCCCccccCCccchH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 328 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHv-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k 328 (427)
++..|+||++.+. .++. |||||. ||..|+..| ..||+||..+....+
T Consensus 294 ~~~~C~IC~~~~~-~~v~--lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVF--IPCGHLVVCQECAPSL--------RKCPICRGIIKGTVR 341 (345)
T ss_dssp TTCBCTTTSSSBC-CEEE--ETTCCEEECTTTGGGC--------SBCTTTCCBCCEEEE
T ss_pred CCCCCCccCCcCC-ceEE--cCCCChhHhHHHHhcC--------CcCCCCCCCccCeEE
Confidence 4568999999988 6665 899999 999999876 479999987765544
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.15 E-value=1.4e-06 Score=66.62 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=37.3
Q ss_pred cccccccccccccccceeEEcCCC--C---cccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCG--H---LYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCG--H---vFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...|.||++... .+. ++||. | .||..||++|+... .+..||+|+..+
T Consensus 5 ~~~~CrIC~~~~~-~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELG-NER--FRACGCTGELENVHRSCLSTWLTIS--RNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECS-CCC--CCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCCBC
T ss_pred CCCEeEEeecCCC-Cce--ecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCCee
Confidence 5678999998744 443 48865 4 99999999999853 257999999765
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.95 E-value=1.5e-06 Score=87.75 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=38.2
Q ss_pred ccccccccccccccccee---E--EcCCCCcccHHHHHHHHHhcCC-------CCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLSELCVV---A--VLTCGHLYHADCLENITAEINK-------YDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv---~--~LpCGHvFH~~CI~~Wl~~~~~-------~~~~CPvCR~~~~ 324 (427)
....|+||+..+.+...+ . -..|||.||..||.+|+..... ....||.|+.+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 455899999998742221 1 2479999999999999985210 1247999997543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.81 E-value=1.3e-05 Score=67.70 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=38.1
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 326 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 326 (427)
.|++|.-.+. -..+.+||+|+||.+|+..|.++ .+..||.|+.++..+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~---~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKK---GDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHT---TCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhc---cCCCCcCcCCeeeee
Confidence 5889987776 23355899999999999999876 378999999765443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=63.47 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=36.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|.||.+.+..+ ...-.|+|.||..|+..|++.. ....||.|+..
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 456899999998832 2223499999999999999741 25699999864
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.34 E-value=0.0092 Score=48.54 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=28.4
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 305 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~W 305 (427)
++..|+||++.+...++..-+.|+|.||..|++.+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 56789999986543666666999999999999983
No 74
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=92.89 E-value=0.047 Score=43.40 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=38.2
Q ss_pred CCCCceeeccccCccccCCCCCccccccc-cCCCCcccccc-cccC-CcCCCCCcc
Q 014284 357 LDSNSVVLDRHKGSWNEGKGPKMASSSSL-KSSSGKPFLKR-HFSF-GSKGSRSLS 409 (427)
Q Consensus 357 ~~~~~v~~d~~~~~~~~Gk~~k~~sS~~~-~~S~~k~~Lrr-Hfs~-~sk~~~~~~ 409 (427)
.+.+.|.||.|.+. +..+|+++|+. ..|||+.||+. |..+ ..+.|+++.
T Consensus 26 ~~~~~v~C~~C~~~----~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~~ 77 (78)
T 2ffw_A 26 TSAEKVLCQFCDQD----PAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIE 77 (78)
T ss_dssp SSSCCCBCSSCCSS----SCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCSC
T ss_pred CCCCCccCCcCCCC----CCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcccC
Confidence 45568899999832 12689999998 99999999998 9865 577777653
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.63 E-value=0.069 Score=41.46 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=36.3
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|.||.+. +.++.--.|...||..|++..|...-...-.||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999864 444433369999999999987765434467999998643
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=90.16 E-value=0.092 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=35.7
Q ss_pred ccccccccccccccc----eeEEcCCCCcccHHHHHHHHH---hc----CCCCCCCCccccCCc
Q 014284 272 MQTCGVCSKLLSELC----VVAVLTCGHLYHADCLENITA---EI----NKYDPACPVCTLGEK 324 (427)
Q Consensus 272 ~~~C~ICld~l~~~~----vv~~LpCGHvFH~~CI~~Wl~---~~----~~~~~~CPvCR~~~~ 324 (427)
...|+||...|.+++ .+..-.|..-||..|+.---. .. ....+.||.|+....
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 357999999998544 454457999999999843110 00 012689999997543
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.93 E-value=0.048 Score=42.61 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=35.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...|.||.....+...+.-=.|.--||..|+..-+.........||.|..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 455799999876533444334689999999997543322224789999974
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.43 E-value=0.23 Score=35.90 Aligned_cols=48 Identities=25% Similarity=0.507 Sum_probs=32.4
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
.|.||.+.-....++.--.|...||..|+..=+.+.....-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 589998654333444334789999999997644432234678999974
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.79 E-value=0.65 Score=52.40 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=42.3
Q ss_pred ccccccccccccccccceeEEcCCC-CcccHHHHHHHHHhcCCCCCCCCccccCCcc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEKK 325 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 325 (427)
.+...|||-++.+. +||+ +|.| +.|-..+|++|+.. +.+||+=+.+...
T Consensus 889 P~~F~cPIs~~lM~-DPVi--lpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMK-DPVI--LPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHh-CCeE--cCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCc
Confidence 38889999999999 8988 9998 58999999999985 6799998876543
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.60 E-value=0.36 Score=36.53 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=35.0
Q ss_pred ccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
.....|.||.+. ..++.--.|.-.||..|+..-+.+.....-.||.|..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356789999873 4444334688999999998755433334789999985
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.45 E-value=0.14 Score=38.75 Aligned_cols=52 Identities=19% Similarity=0.505 Sum_probs=36.2
Q ss_pred ccccccccccccc-ccceeEEcCCCCcccHHHHHHHHHhc-CCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~-~~~vv~~LpCGHvFH~~CI~~Wl~~~-~~~~~~CPvCR~~ 322 (427)
+...|+||...+. +...+.--.|..-||..|+.--.... ....+.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 6678999999885 24455445789999999986432211 1247899999853
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=81.88 E-value=0.23 Score=37.65 Aligned_cols=49 Identities=33% Similarity=0.558 Sum_probs=33.8
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|.||.+. +..+.--.|...||..|+..-+.+.....-.||.|...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 56689999863 34332236899999999986544422346789999853
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.69 E-value=0.32 Score=40.50 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=33.2
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
.+..|.||.+.-...+.+.--.|+..||..||...+.......-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 67789999876432233433479999999999876543222356677765
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.67 E-value=1.1 Score=35.41 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=35.5
Q ss_pred ccccccccccccc-ccceeEEcCCCCcccHHHHHHHHHhc-CCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~-~~~vv~~LpCGHvFH~~CI~~Wl~~~-~~~~~~CPvCR~~~ 323 (427)
+...| ||...+. ...++.--.|..-||..|+.--.... ....+.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 55567 9998874 35555555799999999996422221 12478999998643
No 85
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.33 E-value=0.41 Score=39.51 Aligned_cols=49 Identities=16% Similarity=0.444 Sum_probs=32.5
Q ss_pred cccccccccccccccceeEEcC--CC-CcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp--CG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...| ||.+... ..++.-=. |. .-||..|+. |.+....+..||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9998765 44442223 55 689999997 443333478999998654
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.68 E-value=0.16 Score=37.62 Aligned_cols=48 Identities=33% Similarity=0.570 Sum_probs=34.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
.+..|.||.+. +.++.--.|...||..|+..-+.......-.||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 56789999974 4444334789999999998654433234678999963
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.19 E-value=0.77 Score=37.88 Aligned_cols=51 Identities=20% Similarity=0.422 Sum_probs=34.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...| ||.....+..++.-=.|.-.||..|+..=+... .....||.|+...
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHI-PDTYLCERCQPRN 77 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSC-CSSBCCTTTSSSC
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCC-CCCEECCCCcCCC
Confidence 44568 898776655555445799999999997522221 1268999998543
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.61 E-value=0.32 Score=43.92 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=34.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
.+..|.||.+. +..+..=.|.-.||..|+..-+.......-.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 45679999854 44442235899999999977665433346789999864
No 89
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=79.41 E-value=0.6 Score=36.53 Aligned_cols=49 Identities=16% Similarity=0.444 Sum_probs=32.4
Q ss_pred cccccccccccccccceeEEcC--CC-CcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp--CG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
+...| ||..... ..++.-=. |. ..||..|+. |.+.......||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45567 8998654 44442223 55 689999998 444333578999998644
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.00 E-value=3.6 Score=36.47 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=34.1
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHH-----h--cCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITA-----E--INKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~-----~--~~~~~~~CPvCR~ 321 (427)
.+..|.||.+- +..+--=.|--+||..||..-+. + .....-.||+|..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 56789999865 44442236999999999997552 1 1234788999984
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.32 E-value=0.24 Score=37.11 Aligned_cols=47 Identities=34% Similarity=0.610 Sum_probs=33.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
.+..|.||.+. +..+.--.|.-.||..|+..-+.......-.||.|.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 56789999974 444433478999999999864443223467899997
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.98 E-value=2.4 Score=35.14 Aligned_cols=51 Identities=29% Similarity=0.482 Sum_probs=38.0
Q ss_pred ccccccccccccc----ccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCCc
Q 014284 271 DMQTCGVCSKLLS----ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 324 (427)
Q Consensus 271 e~~~C~ICld~l~----~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 324 (427)
..+.|.||-+... ...-++.--|+--.|..|.+--..+ .+..||.|+..++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 5578999999865 1222344568989999999876665 4789999997653
No 93
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=77.40 E-value=0.46 Score=39.80 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=34.0
Q ss_pred cccccccccccccccceeEEcCC-CCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTC-GHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpC-GHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|-.|.-..+ . + +.| .|..|..||...|.. ...||+|..+.
T Consensus 27 G~~nCKsCWf~~k-~--L--V~C~dHYLCl~CLtlmL~~----SdrCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENK-G--L--VECNNHYLCLNCLTLLLSV----SNRCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCS-S--E--EECSSCEEEHHHHHHTCSS----SSEETTTTEEC
T ss_pred CcccChhhccccC-C--e--eeecchhhHHHHHHHHHhh----ccCCcccCCcC
Confidence 5568999986655 1 2 446 799999999998875 78999999643
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=76.90 E-value=0.38 Score=44.30 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=34.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|.||.+. +..+..=.|...||..|+..-+.......-.||.|+..
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 45679999854 34332236899999999987665433346789999864
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=76.82 E-value=1.3 Score=36.43 Aligned_cols=50 Identities=18% Similarity=0.506 Sum_probs=30.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHH--HHh----------cCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI--TAE----------INKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~W--l~~----------~~~~~~~CPvCR~ 321 (427)
.+..|.||-.. +.....--=.|+-+||..||.+. ++. .....-.||.|..
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 66789999743 31222111238999999999985 111 1122457999963
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.22 E-value=0.23 Score=40.71 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=34.6
Q ss_pred ccccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
.+...|.||.+.-....++.-=.|...||..||..=|.+.....-.||.|.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCc
Confidence 366789999976432334433369999999999854443223467899997
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.54 E-value=0.3 Score=37.38 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=33.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
.+..|.||.+. ...+.--.|.-.||..|+..-+.......-.||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 56789999964 3444333689999999998644432234678999975
No 98
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=72.53 E-value=0.69 Score=34.87 Aligned_cols=47 Identities=19% Similarity=0.471 Sum_probs=31.4
Q ss_pred cccccccccccccccceeEEcC--CC-CcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp--CG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...| ||.+... +.++.-=. |. .-||..|+. |.+.......||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 9998754 44443334 65 699999998 4443334789999974
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.26 E-value=0.45 Score=36.00 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=35.0
Q ss_pred cccccccccccccc--cceeEEcCCCCcccHHHHHHHHHh--c-CCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAE--I-NKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~--~~vv~~LpCGHvFH~~CI~~Wl~~--~-~~~~~~CPvCR~~ 322 (427)
+...|.||...... ...+.--.|.-.||..|+..-+.. . ....-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 56789999976432 333322378999999999864322 1 2247899999854
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.86 E-value=0.25 Score=40.08 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=33.8
Q ss_pred cccccccccccccc--cceeEEcCCCCcccHHHHHHHHHh----cCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAE----INKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~--~~vv~~LpCGHvFH~~CI~~Wl~~----~~~~~~~CPvCR~ 321 (427)
+...|.||...-.. +..+.-=.|...||..|+..-|.. .....-.|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 34579999976331 233322268999999999875542 2334789999974
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.37 E-value=0.63 Score=42.58 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=33.2
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
...|.+|.+. +..+..-.|.-.||..|+..=+.......-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999854 44443346889999999976554333346789999853
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.36 E-value=3.4 Score=34.50 Aligned_cols=49 Identities=20% Similarity=0.499 Sum_probs=30.8
Q ss_pred ccccccccccc------cccceeEEcCCCCcccHHHHHH---HHHhcCCCCCCCCccc
Q 014284 272 MQTCGVCSKLL------SELCVVAVLTCGHLYHADCLEN---ITAEINKYDPACPVCT 320 (427)
Q Consensus 272 ~~~C~ICld~l------~~~~vv~~LpCGHvFH~~CI~~---Wl~~~~~~~~~CPvCR 320 (427)
...|.+|+..= ..++.+.--.|+..||..||.. .........-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35799998642 1234444457999999999952 2222222467788886
No 103
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=70.57 E-value=0.77 Score=34.64 Aligned_cols=47 Identities=17% Similarity=0.467 Sum_probs=30.5
Q ss_pred cccccccccccccccceeEEcC--CC-CcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp--CG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...| ||.+... +.++.-=. |. ..||..|+. |.+.......||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 9998654 44432223 55 689999998 5443335789999974
No 104
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.68 E-value=1.2 Score=34.74 Aligned_cols=50 Identities=26% Similarity=0.589 Sum_probs=33.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhc-----CCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-----NKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~-----~~~~~~CPvCR~ 321 (427)
+...| ||...+....++.--.|..-||..|+.--.... ....+.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 34567 899887644566555799999999985321110 123799999985
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.58 E-value=1 Score=37.71 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=32.5
Q ss_pred ccccccccccc-ccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 273 QTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 273 ~~C~ICld~l~-~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
..|.||.+.-. +...+.--.|...||..|+..-|.+.-...-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36889986422 12333223689999999998655543334679999984
No 106
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.06 E-value=0.86 Score=37.40 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=33.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
....|.||.+. +..+.--.|.-.||..|+.+=+.+.....-.||.|..
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 55689999964 3444333688899999998755543334678999985
No 107
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=67.73 E-value=1.1 Score=34.21 Aligned_cols=48 Identities=19% Similarity=0.422 Sum_probs=31.4
Q ss_pred cccccccccccccccceeEEcC--CC-CcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~Lp--CG-HvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
+...| ||.+... +.++.-=. |. .-||..|+. |.+.......||.|+..
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 44567 9998754 44443224 54 799999997 44333347899999753
No 108
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=64.19 E-value=0.84 Score=37.90 Aligned_cols=48 Identities=21% Similarity=0.484 Sum_probs=32.0
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
.|.||.+.-.+..++.--.|...||..||+.-+...-.....||.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 577887654433344334799999999998654432234678999975
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=64.14 E-value=1.9 Score=38.23 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=34.0
Q ss_pred ccccccccccccc-ccceeEEcCCCCcccHHHHHHHHHh-cCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~-~~~vv~~LpCGHvFH~~CI~~Wl~~-~~~~~~~CPvCR~ 321 (427)
+...| ||..... ....+..=.|.-.||..|+.--... .......||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45679 9998764 2345544578999999999632222 1234789999986
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=63.43 E-value=9 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=32.3
Q ss_pred cccccccccccccccceeEEcCC----CCcccHHHHHHHHHhc-CCCCCCCCc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTC----GHLYHADCLENITAEI-NKYDPACPV 318 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpC----GHvFH~~CI~~Wl~~~-~~~~~~CPv 318 (427)
....|.+|.+-|++..-+ .| +|-||..|-...++.. ......||-
T Consensus 14 a~l~CtlC~erLEdtHFV---QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV---QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE---ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CeeEeecchhhhccCcee---eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 567899999999844433 34 8999999999988752 223455663
No 111
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=63.29 E-value=1.6 Score=33.97 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=30.4
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCC-CCCCCcccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL 321 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~-~~~CPvCR~ 321 (427)
.|.||...-..+.++.-=.|...||..||..=|.+.-.. .-.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567777542223333222689999999998644432223 678999984
No 112
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.70 E-value=1.1 Score=34.80 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.7
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...| ||...+.+...+.--.|..-||..|+.--.. .-...+.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 56678 9998776445665567999999999964221 1123789999974
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.11 E-value=1.4 Score=35.03 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=31.6
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCC-CCCCCcccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL 321 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~-~~~CPvCR~ 321 (427)
.|.||...-.....+.-=.|...||..||..=|...-.. .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 788998643323433223689999999998644432223 678999974
No 114
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=61.58 E-value=1.4 Score=32.07 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=30.1
Q ss_pred ccccccccccc-cceeEEc-CCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 274 TCGVCSKLLSE-LCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 274 ~C~ICld~l~~-~~vv~~L-pCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
.|.||...+.+ ...+.-- .|.--||..|+.--........+.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48899988862 3344334 58889999998642221111478999995
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.81 E-value=16 Score=31.73 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=35.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHH-----HHhc--CCCCCCCCccccCCccchHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI-----TAEI--NKYDPACPVCTLGEKKTHKLS 330 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~W-----l~~~--~~~~~~CPvCR~~~~~~~kL~ 330 (427)
.+..|.||.+- ++.+--=.|-.+||..||..- +.+. ....-.|++|.. +++..|.
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~--~pl~~L~ 117 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP--EPLLDLV 117 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC--GGGHHHH
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC--HHHHHHH
Confidence 45679999864 333322268999999999975 3332 235789999974 3444433
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.55 E-value=1.5 Score=33.93 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=33.5
Q ss_pred ccccccccccccccc-ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~~~-~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...| ||.....+. .++.--.|.--||..|+.--........+.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 45678 799876533 455555799999999986422111234789999974
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=59.17 E-value=1.5 Score=34.95 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=29.7
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCC-CCCCcccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYD-PACPVCTL 321 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~-~~CPvCR~ 321 (427)
.|.||...-.....+.-=.|...||..||..-|...-... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4667765433223232226889999999987665432234 78999974
No 118
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.29 E-value=2.1 Score=33.72 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=33.4
Q ss_pred cccccccccccccccceeEEc--CCCCcccHHHHHHHHHh-----cCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAE-----INKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~L--pCGHvFH~~CI~~Wl~~-----~~~~~~~CPvCR~~ 322 (427)
+...| ||........++.-= .|..-||..|+.---.. .....+.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45578 899875545555444 79999999998531110 01137899999853
No 119
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=56.91 E-value=1.9 Score=35.40 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=29.8
Q ss_pred cccccccccccccccceeEEcCCC---CcccHHHHHHHHHhcCCCCCCCCc-cc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCG---HLYHADCLENITAEINKYDPACPV-CT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCG---HvFH~~CI~~Wl~~~~~~~~~CPv-CR 320 (427)
+...| ||..... +.++.-=.|. .-||..||. |.........||. |+
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 44567 9997654 4444322443 689999996 3433234789999 97
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.31 E-value=7 Score=30.91 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=25.9
Q ss_pred CCccccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 268 SSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 268 ps~e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
+..+...|.+|...|.-...-.+ -.||.+||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 33356689999999882222222 46999999999754
No 121
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.78 E-value=3.1 Score=33.66 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=32.5
Q ss_pred cccccccccccc--cccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLL--SELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l--~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...|.||.+.- ..+.++.--.|.-.||..|+..-+ .....-.||.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 567899999764 212333223688899999997532 1124778999974
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.81 E-value=1.6 Score=36.78 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=32.7
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
..|.||...-.+..++.--.|...||..|+..=|.......-.||.|.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 368888876443444433479999999999864443223467899997
No 123
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.16 E-value=2.7 Score=39.95 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=28.3
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCC-CCCCCcccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL 321 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~-~~~CPvCR~ 321 (427)
.|.||...=.....+..=.|...||..|+..=|...-.. .-.||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 689997642222333222689999999998655432223 578999974
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=49.68 E-value=6.3 Score=33.19 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=30.8
Q ss_pred ccccccccccccccccceeEEc--CCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 270 VDMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~L--pCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
..+..|.||.+. ++++.-= .|-..||..||. |.+.-...-.||.|.
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 366789999843 3433222 477999999997 544333467899775
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=49.55 E-value=3 Score=34.96 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=29.6
Q ss_pred ccccccccccc-------ccceeEEcCCCCcccHHHHHHHHH---hcCCCCCCCCccc
Q 014284 273 QTCGVCSKLLS-------ELCVVAVLTCGHLYHADCLENITA---EINKYDPACPVCT 320 (427)
Q Consensus 273 ~~C~ICld~l~-------~~~vv~~LpCGHvFH~~CI~~Wl~---~~~~~~~~CPvCR 320 (427)
..|.||+..-. ..+.+.--.|+..||..||..... ......-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999986542 123343347999999999975421 1112356777774
No 126
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.73 E-value=6 Score=30.79 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=32.6
Q ss_pred cccccccccccc--cccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLL--SELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l--~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
+...|.||.+.- .++..+.-=.|.-.||..|+..-. .....-.||.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 667899998764 223333222689999999997521 1224678999973
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.24 E-value=12 Score=31.93 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=25.7
Q ss_pred CCccccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 268 SSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 268 ps~e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
+..+...|.+|...|.-...-.+ -.||++||..|...
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 33356689999999872222222 46999999999654
No 128
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=43.71 E-value=13 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=25.3
Q ss_pred cccccccccccccccceeEE-cCCCCcccHHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENI 305 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~W 305 (427)
+...|.+|...|.-...-.+ -.||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 55689999998872222222 479999999998654
No 129
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.27 E-value=3.3 Score=35.66 Aligned_cols=50 Identities=14% Similarity=0.375 Sum_probs=30.1
Q ss_pred CCccccccccccccccccceeEE-cCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 268 SSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 268 ps~e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
|..+...|.+|...|.-...-.+ -.||.+||..|....... ...|-.|-.
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~ 65 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQR 65 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHH
Confidence 44466789999999873222222 479999999997765442 567888853
No 130
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.55 E-value=14 Score=29.20 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=26.1
Q ss_pred CCccccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 268 SSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 268 ps~e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
+..+...|.+|...|.-...-.+ -.||++||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 33366789999999983222222 46999999999754
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=41.18 E-value=12 Score=28.16 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=25.8
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
.|+.|.+.+.....+..+ |..||.+| ..|-.|...+
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~C------------F~C~~C~~~L 37 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPC------------LKCEKCGKTL 37 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTT------------CBCTTTCCBC
T ss_pred cCCCCCCEEECceEEEEC--CccccCCC------------CCccccCccC
Confidence 588898887745555333 89999988 4688888543
No 132
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.79 E-value=13 Score=24.24 Aligned_cols=28 Identities=21% Similarity=0.543 Sum_probs=20.7
Q ss_pred cccccccccccccceeEEcCCCCcccHHHH
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCL 302 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI 302 (427)
..|+.|.+..-..+.+ ..=|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeE--EECCeEecccCC
Confidence 4799999776634444 456999999984
No 133
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.67 E-value=17 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=24.7
Q ss_pred cccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
+...|.+|...|.-...-.+ -.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 55689999999883222222 47999999999754
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.29 E-value=14 Score=29.23 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=24.7
Q ss_pred ccccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 270 VDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 270 ~e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
.+...|.+|...|.-...-.+ -.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 355689999999872222222 46999999999653
No 135
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.42 E-value=16 Score=27.44 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=28.9
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|..|.+.+.....+. .-|..||.+| ..|-.|...+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C------------F~C~~C~~~L 46 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC------------LKCERCSKTL 46 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT------------CBCSSSCCBC
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC------------CCCCCCCCcc
Confidence 4467999999887555553 4589999998 4688898543
No 136
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=14 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.437 Sum_probs=28.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|..|.+.+.....+.. -|..||.+| ..|-.|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C------------F~C~~C~~~ 51 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC------------FKCQTCSVI 51 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT------------CBCSSSCCB
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc------------CCcCcCCCC
Confidence 45689999998875555533 489999998 468889753
No 137
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.53 E-value=8 Score=26.40 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.0
Q ss_pred cccccccccccccc
Q 014284 270 VDMQTCGVCSKLLS 283 (427)
Q Consensus 270 ~e~~~C~ICld~l~ 283 (427)
.+...||||+..|.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 36789999999987
No 138
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.10 E-value=19 Score=27.75 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=23.1
Q ss_pred cccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 273 QTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
..|.+|...|.-...-.+ -.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999872222222 46999999999754
No 139
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=37.59 E-value=20 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.442 Sum_probs=31.5
Q ss_pred cccccccccccccc-cceeEEc-CCCCcccHHHHHHHH------HhcCCCCCCCCccc
Q 014284 271 DMQTCGVCSKLLSE-LCVVAVL-TCGHLYHADCLENIT------AEINKYDPACPVCT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~-~~vv~~L-pCGHvFH~~CI~~Wl------~~~~~~~~~CPvCR 320 (427)
....|++|...+.+ ...+.-- .|.--||..|+.--- .+.......||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 55689999999863 3344334 688899999984311 11112267899886
No 140
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.32 E-value=19 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.588 Sum_probs=25.2
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|..|.+.+. +.++. .-|..||.+|+ .|-.|...
T Consensus 4 ~~~~C~~C~~~I~-~~~~~--a~~~~~H~~CF------------~C~~C~~~ 40 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIK--AMNNSWHPECF------------RCDLCQEV 40 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEE--ETTEEECTTTS------------BCSSSCCB
T ss_pred CCCcCccCCCEec-ceEEE--ECcccccccCC------------EeCCCCCc
Confidence 3457888888877 44443 34888888883 57778754
No 141
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.99 E-value=11 Score=29.28 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=29.3
Q ss_pred cccccccccccccccceeEEcCC---CCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTC---GHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpC---GHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
+...| ||..... +.++.--.| ..-||..|+. |.........||.|.
T Consensus 5 ~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~ 53 (70)
T 1x4i_A 5 SSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCT 53 (70)
T ss_dssp CCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHH
T ss_pred CCeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCC
Confidence 34456 6887644 444433344 2689999997 333333478899997
No 142
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.93 E-value=13 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=29.5
Q ss_pred ccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 274 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 274 ~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
.|-.|+..|.+..+..--.|++.||.+|=. .+-+ .-..||-|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe---~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHD---SLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTT---TSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcCcccchhH-HHHh---hccCCcCCC
Confidence 599999998633334345799999999942 2222 245799883
No 143
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=34.10 E-value=5.9 Score=28.65 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=29.9
Q ss_pred cccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 277 VCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 277 ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
||.....+..++.--.|.--||..|+.--... ....+.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~-~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGG-CCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCccc-CCCcEECcCCCC
Confidence 78776654466655579999999998642221 124789999973
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.01 E-value=17 Score=33.41 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=24.2
Q ss_pred cccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
+...|.+|...|.-.-.-.+ -.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 44689999999872222222 46999999999654
No 145
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.78 E-value=21 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=23.6
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
...|..|.+.+. ...+. .-|..||.+|+ .|-.|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~--a~~~~~H~~CF------------~C~~C~~~ 40 (69)
T 2cur_A 5 SSGCVKCNKAIT-SGGIT--YQDQPWHADCF------------VCVTCSKK 40 (69)
T ss_dssp CCCCSSSCCCCC-TTCEE--ETTEEECTTTT------------BCTTTCCB
T ss_pred cCCCcccCCEeC-cceEE--ECccccccCcC------------EECCCCCC
Confidence 456888888776 34443 34788888873 57777643
No 146
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.62 E-value=29 Score=26.31 Aligned_cols=37 Identities=19% Similarity=0.461 Sum_probs=28.2
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|..|.+.+. ..++ ..-+..||.+|+ .|-.|...
T Consensus 14 ~~~~C~~C~~~I~-~~~~--~a~~~~~H~~CF------------~C~~C~~~ 50 (79)
T 1x62_A 14 KLPMCDKCGTGIV-GVFV--KLRDRHRHPECY------------VCTDCGTN 50 (79)
T ss_dssp CCCCCSSSCCCCC-SSCE--ECSSCEECTTTT------------SCSSSCCC
T ss_pred CCCccccCCCCcc-CcEE--EECcceeCcCcC------------eeCCCCCC
Confidence 5568999999988 3444 456899999994 68888853
No 147
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.56 E-value=26 Score=35.59 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=32.8
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHh-cCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~-~~~~~~~CPvCR~~~ 323 (427)
..|||-...+. .|+ +-..|.|.-|.+ +..||.. .+.....||+|.+..
T Consensus 250 L~CPlS~~ri~-~Pv-Rg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMK-YPS-KSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCS-SEE-EETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCcccccc-ccC-cCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCccc
Confidence 58999998887 554 446799996665 3344432 223578999998754
No 148
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.38 E-value=17 Score=28.29 Aligned_cols=38 Identities=16% Similarity=0.425 Sum_probs=27.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|..|.+.+. ...+ ..-|..||.+| ..|-.|...+
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C------------F~C~~C~~~L 61 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEE------------FNCAHCKNTM 61 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTT------------CBCSSSCCBC
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccC------------CccCCCCCCC
Confidence 4457999998886 5555 34589999888 4688887543
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.64 E-value=24 Score=27.17 Aligned_cols=38 Identities=26% Similarity=0.621 Sum_probs=28.4
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|..|.+.+.....+ ..-|..||.+| ..|-.|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~C------------F~C~~C~~~ 51 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSC------------FRCHTCEAT 51 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTT------------CBCSSSCCB
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCc------------CEEcCCCCC
Confidence 456899999988645555 34599999999 468888753
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.97 E-value=21 Score=33.23 Aligned_cols=34 Identities=18% Similarity=0.527 Sum_probs=24.5
Q ss_pred cccccccccccccccceeEE-cCCCCcccHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 304 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~-LpCGHvFH~~CI~~ 304 (427)
+...|.+|...|.-.-.-.+ -.||++||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45689999999872222222 47999999999754
No 151
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=30.58 E-value=8.3 Score=40.30 Aligned_cols=50 Identities=18% Similarity=0.442 Sum_probs=33.1
Q ss_pred ccccccccccccc-ccceeEEcCCCCcccHHHHHHHHHhc-CCCCCCCCcccc
Q 014284 271 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTL 321 (427)
Q Consensus 271 e~~~C~ICld~l~-~~~vv~~LpCGHvFH~~CI~~Wl~~~-~~~~~~CPvCR~ 321 (427)
+...| ||...+. ...++..-.|.--||..|+.---... ......||.|+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 34456 9998774 35566656799999999995321111 113589999984
No 152
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=30.50 E-value=4.2 Score=31.09 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=29.0
Q ss_pred cccccccccccccccceeEEc--CCCCcccHHHHHHHHHhcC----CCCCCCCccc
Q 014284 271 DMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEIN----KYDPACPVCT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~L--pCGHvFH~~CI~~Wl~~~~----~~~~~CPvCR 320 (427)
+...| ||........++.-= .|.--||..|+.---.... ...+.||.|+
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 34567 897665544544321 3888999999842100000 0258899998
No 153
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.39 E-value=28 Score=27.01 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=28.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|..|.+.+. ..++ ..-+..||.+| ..|-.|...+
T Consensus 24 ~~~~C~~C~~~I~-~~~~--~a~~~~~H~~C------------F~C~~C~~~L 61 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVV--KARDKYRHPEC------------FVCADCNLNL 61 (89)
T ss_dssp SCCBCTTTCCBCC-SCCE--ESSSCEECTTT------------CCCSSSCCCT
T ss_pred cCCCcccCCCEec-ccEE--EECCceECccC------------CEecCCCCCC
Confidence 4468999999988 3444 45689999999 4688898544
No 154
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.36 E-value=11 Score=37.50 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=0.0
Q ss_pred cccccccccccccccce-eEEcCCCCcccHHHHHHHHHhc---CCCCCCCCccc
Q 014284 271 DMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEI---NKYDPACPVCT 320 (427)
Q Consensus 271 e~~~C~ICld~l~~~~v-v~~LpCGHvFH~~CI~~Wl~~~---~~~~~~CPvCR 320 (427)
+...|.+|...|.-.-. -..-.||++||..|....+.-. .+....|-.|-
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~ 427 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCF 427 (434)
T ss_dssp ------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHH
Confidence 45689999998872211 1224799999999997755321 11244566665
No 155
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.78 E-value=24 Score=31.34 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=33.8
Q ss_pred cccccccccccccc--ccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCcccc
Q 014284 270 VDMQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321 (427)
Q Consensus 270 ~e~~~C~ICld~l~--~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~ 321 (427)
.++..|.+|+..|. .+.-.....|.|.+|..|-. |+.. ...-.|-+|..
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~--~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE--EQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS--SSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC--CCcEeeHHHHH
Confidence 36789999999876 22333336899999999962 3322 23567999983
No 156
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.72 E-value=26 Score=26.52 Aligned_cols=36 Identities=36% Similarity=0.747 Sum_probs=27.2
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..|+.|.+.+. ..++. .-|..||.+| ..|-.|...+
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C------------F~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC------------FVCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT------------SSCSSSCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccC------------CccccCCCCC
Confidence 47999999888 45553 3599999998 4688888544
No 157
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.31 E-value=28 Score=29.16 Aligned_cols=39 Identities=15% Similarity=0.531 Sum_probs=28.6
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|..|.+.+.+..++ ..-|..||.+| ..|-.|...+
T Consensus 60 ~~~~C~~C~~~I~~~~~v--~a~~~~wH~~C------------F~C~~C~~~L 98 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLL--YAMDSYWHSRC------------LKCSSCQAQL 98 (123)
T ss_dssp SCSBBSSSSSBCCSSSEE--EETTEEEETTT------------SBCTTTCCBG
T ss_pred cCCcCcCCCCCcCCcEEE--EeCCcEEcccc------------cCcCcCCCcc
Confidence 456899999988844444 34599999999 4688888533
No 158
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.76 E-value=44 Score=27.54 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=5.1
Q ss_pred CCcccHHHHHH
Q 014284 294 GHLYHADCLEN 304 (427)
Q Consensus 294 GHvFH~~CI~~ 304 (427)
|.+||..|..+
T Consensus 54 g~~yC~~cy~~ 64 (122)
T 1m3v_A 54 GMILCRNDYIR 64 (122)
T ss_dssp TEEECHHHHHH
T ss_pred CeeecHHHHHH
Confidence 44444444443
No 159
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.91 E-value=32 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=16.6
Q ss_pred cccccccccccccc-ceeEEcCCCCcccHHH
Q 014284 272 MQTCGVCSKLLSEL-CVVAVLTCGHLYHADC 301 (427)
Q Consensus 272 ~~~C~ICld~l~~~-~vv~~LpCGHvFH~~C 301 (427)
...|..|.+.+... .++ ..=|..||.+|
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~C 33 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV--VALDRVFHVGC 33 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE--ECSSSEECTTT
T ss_pred CCCCccCCCccCCCceEE--EECCCeEcccC
Confidence 34677777766532 233 23477777777
No 160
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.79 E-value=34 Score=25.67 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=27.7
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
...|+-|.+.+. ..++ ..-|..||.+| ..|-.|...+
T Consensus 5 ~~~C~~C~~~I~-~~~v--~a~~~~wH~~C------------F~C~~C~~~L 41 (73)
T 1wig_A 5 SSGCDSCEKYIT-GRVL--EAGEKHYHPSC------------ALCVRCGQMF 41 (73)
T ss_dssp CCSCSSSCCCCS-SCCB--CCSSCCBCTTT------------SCCSSSCCCC
T ss_pred cCCcccCCCEec-CeeE--EeCCCCCCCCc------------CEeCCCCCCC
Confidence 347999999888 3444 45699999998 4688888644
No 161
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.58 E-value=29 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=26.8
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
...|+.|.+.+. +..+ ..-|..||.+| ..|-.|...+
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a~~~~~H~~C------------F~C~~C~~~L 41 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NAMGKQWHVEH------------FVCAKCEKPF 41 (66)
T ss_dssp CCEETTTTEECC-SCEE--CCTTSBEETTT------------CBCTTTCCBC
T ss_pred CCCCcccCCEec-ceEE--EECccccccCc------------CEECCCCCCC
Confidence 357999998887 5544 45688999988 4688887543
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.92 E-value=33 Score=26.67 Aligned_cols=38 Identities=24% Similarity=0.600 Sum_probs=28.0
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|..|.+.+.....+ ..-|..||.+|+ .|-.|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF------------~C~~C~~~ 51 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISCF------------RCSYCNNK 51 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTTC------------BCTTTCCB
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCCC------------eeCCCCCC
Confidence 456899999988744544 456899999983 67788743
No 163
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=36 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=25.4
Q ss_pred cccccccccccccc-ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 272 MQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 272 ~~~C~ICld~l~~~-~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
...|..|.+.+... .++ ..-|..||.+| ..|-.|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~C------------F~C~~C~~~ 42 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHC------------FLCSGCEQP 42 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTT------------CBCTTTCCB
T ss_pred CCCCccCCCccccCccEE--EECccccCccc------------CeECCCCCc
Confidence 34789998887742 333 34588999888 367788753
No 164
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.25 E-value=2.4 Score=35.68 Aligned_cols=39 Identities=28% Similarity=0.522 Sum_probs=26.5
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..||+|..++.-. =|+.+|..|-..... ...||.|..+.
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~f~~-----~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEFIEM-----KALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCEEEE-----EEECTTTCSBC
T ss_pred ccCccCCCcceec-------CCEEECccccchhhc-----cccCcchhhHH
Confidence 7899999887611 145557777554322 57899999654
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.71 E-value=37 Score=24.98 Aligned_cols=38 Identities=24% Similarity=0.523 Sum_probs=26.9
Q ss_pred cccccccccccccc---cceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 271 DMQTCGVCSKLLSE---LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 271 e~~~C~ICld~l~~---~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
....|..|.+.+.. ..++ ..-|..||.+| ..|-.|...
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~--~a~~~~wH~~C------------F~C~~C~~~ 44 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYI--SFEERQWHNDC------------FNCKKCSLS 44 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCE--ECSSCEECTTT------------CBCSSSCCB
T ss_pred CCCCCcCCCccccCCCCcceE--EECCcccCccc------------CEeccCCCc
Confidence 34579999988873 2333 34689999988 468888753
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.54 E-value=44 Score=26.13 Aligned_cols=31 Identities=26% Similarity=0.651 Sum_probs=24.1
Q ss_pred cccccccccccccccceeEEcCC-CCcccHHHHHHH
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTC-GHLYHADCLENI 305 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpC-GHvFH~~CI~~W 305 (427)
+..-|.||.+.- +++-+.| |-+||..|..+.
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 556799999773 3667889 899999997653
No 167
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.14 E-value=34 Score=25.86 Aligned_cols=36 Identities=31% Similarity=0.789 Sum_probs=25.0
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
...|+.|.+.+. +.++. .-|..||.+| ..|-.|...
T Consensus 15 ~~~C~~C~~~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~ 50 (81)
T 2dlo_A 15 LEKCATCSQPIL-DRILR--AMGKAYHPGC------------FTCVVCHRG 50 (81)
T ss_dssp CCBCTTTCCBCC-SCCEE--ETTEEECTTT------------CBCSSSCCB
T ss_pred CCccccCCCeec-ceeEE--ECCccccHHh------------cCcccCCCc
Confidence 357888888887 44443 3488889888 368888753
No 168
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.92 E-value=43 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=25.1
Q ss_pred ccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 272 ~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
...|..|.+.+. ...+ ..-|..||.+| ..|-.|...
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a~~~~~H~~C------------F~C~~C~~~ 40 (70)
T 2d8z_A 5 SSGCVQCKKPIT-TGGV--TYREQPWHKEC------------FVCTACRKQ 40 (70)
T ss_dssp CCBCSSSCCBCC-SSEE--ESSSSEEETTT------------SBCSSSCCB
T ss_pred CCCCcccCCeec-cceE--EECccccCCCC------------CccCCCCCc
Confidence 356888988887 3433 34588899888 367788753
No 169
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.76 E-value=31 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.425 Sum_probs=32.2
Q ss_pred ccccccccccccc-ceeEEc-CCCCcccHHHHHHHH---H---hcCCCCCCCCccccC
Q 014284 273 QTCGVCSKLLSEL-CVVAVL-TCGHLYHADCLENIT---A---EINKYDPACPVCTLG 322 (427)
Q Consensus 273 ~~C~ICld~l~~~-~vv~~L-pCGHvFH~~CI~~Wl---~---~~~~~~~~CPvCR~~ 322 (427)
..|+||...+.+. ..+.-= .|.--||.+|+.--. . ........||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 4699999998633 333222 578899999985311 0 011236899999864
No 170
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.25 E-value=40 Score=24.66 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=25.7
Q ss_pred ccccccccccccc-ceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~-~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..|..|.+.+... .++. .-|..||.+| ..|-.|...+
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L 43 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETC------------FICHRCQQPI 43 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTT------------TCCSSSCCCC
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccC------------CcccccCCcc
Confidence 4799999888743 2442 3588999888 3688887543
No 171
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=38 Score=25.36 Aligned_cols=37 Identities=24% Similarity=0.537 Sum_probs=26.8
Q ss_pred cccccccccccc---cceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSE---LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~---~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..|..|.+.+.+ ..++ ..-|..||.+| ..|-.|...+
T Consensus 6 ~~C~~C~~~I~~~g~~~~~--~a~~~~wH~~C------------F~C~~C~~~L 45 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI--CFQDSQWHSEC------------FNCGKCSVSL 45 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE--EETTEEEEGGG------------CBCTTTCCBC
T ss_pred CCCccCCCcccCCCCceeE--EECCcccCccc------------CChhhCCCcC
Confidence 479999998883 2444 34589999999 4688898533
No 172
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=22.27 E-value=51 Score=33.29 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=32.4
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHh-cCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~-~~~~~~~CPvCR~~~ 323 (427)
..|||-...+. .|+- -..|.|.-|.+ +..||.. .+.....||+|.+..
T Consensus 216 L~CPlS~~ri~-~P~R-g~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLT-IPCR-AVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCS-SEEE-ETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceec-cCCc-CCCCCCCccCC-HHHHHHHHhhCCCeECCCCCccc
Confidence 47999998887 5543 46799995554 3344432 123478999999754
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=39 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=27.5
Q ss_pred cccccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 271 e~~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
....|..|.+.+. +..+ ..-|..||.+| ..|-.|...+
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C------------F~C~~C~~~L 51 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--IFKNDPYHPDH------------FNCANCGKEL 51 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--CCSSSCCCTTT------------SBCSSSCCBC
T ss_pred CCCCCccCCCEec-ceEE--EECcceeCCCC------------CEeCCCCCcc
Confidence 4467999998887 4444 34588999988 4688887543
No 174
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.08 E-value=34 Score=29.70 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=32.0
Q ss_pred cccccccccccccc--ccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccc
Q 014284 270 VDMQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 320 (427)
Q Consensus 270 ~e~~~C~ICld~l~--~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR 320 (427)
.....|.+|...|. ...-..-..|.|.+|..|-..-........-.|=+|.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~ 105 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICL 105 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhH
Confidence 36678999999984 2222333679999999995421110112245688887
No 175
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.43 E-value=43 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.652 Sum_probs=23.6
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccC
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 322 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~ 322 (427)
..|..|.+.+.+ ..+. .-|..||.+| ..|-.|...
T Consensus 16 ~~C~~C~~~I~~-~~v~--a~~~~~H~~C------------F~C~~C~~~ 50 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS--AMDTVWHPEC------------FVCGDCFTS 50 (80)
T ss_dssp CBCTTTCCBCCS-SCEE--ETTEEECTTT------------CBCSSSCCB
T ss_pred CccccCCCeecc-eeEE--ECCCeEecCc------------CChhhCCCC
Confidence 468888888773 4443 3478888887 357777754
No 176
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=41 Score=25.37 Aligned_cols=36 Identities=28% Similarity=0.547 Sum_probs=26.7
Q ss_pred cccccccccccccceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..|..|.+.+. +.++ ..-|..||.+| ..|-.|...+
T Consensus 16 ~~C~~C~~~I~-~~~~--~a~~~~~H~~C------------F~C~~C~~~L 51 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VAGEFKYHPEC------------FACMSCKVII 51 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CCTTCCBCTTS------------CBCTTTCCBC
T ss_pred CcCccCCCCcC-ceEE--EECCceecccc------------CCccCCCCcc
Confidence 47999999888 4544 34589999988 4688887543
No 177
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.98 E-value=43 Score=24.88 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=26.8
Q ss_pred cccccccccccc----cceeEEcCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 273 QTCGVCSKLLSE----LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 273 ~~C~ICld~l~~----~~vv~~LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..|+.|.+.+.. ...+. .=|..||.+| ..|-.|...+
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L 56 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC------------FHCKKCSVNL 56 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT------------CBCSSSCCBC
T ss_pred ccCcccCCcccCCCCCceeEE--ECcceeCccc------------CEehhcCCCC
Confidence 579999998883 24443 3489999998 4688887543
No 178
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.88 E-value=1.8e+02 Score=21.25 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=13.1
Q ss_pred CCCCCCccccCCccchHHH
Q 014284 312 YDPACPVCTLGEKKTHKLS 330 (427)
Q Consensus 312 ~~~~CPvCR~~~~~~~kL~ 330 (427)
..+.|++|...+.....|.
T Consensus 64 ~~~~C~~C~~~f~~~~~L~ 82 (95)
T 2yt9_A 64 KPYICQSCGKGFSRPDHLN 82 (95)
T ss_dssp SSBCCSSSCCCBSSHHHHH
T ss_pred CceECCCccchhCCHHHHH
Confidence 3578999988776655544
No 179
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=20.66 E-value=21 Score=36.96 Aligned_cols=49 Identities=14% Similarity=0.363 Sum_probs=32.7
Q ss_pred ccccccccccc-ccceeEEcCCCCcccHHHHHHHHHhc-CCCCCCCCcccc
Q 014284 273 QTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTL 321 (427)
Q Consensus 273 ~~C~ICld~l~-~~~vv~~LpCGHvFH~~CI~~Wl~~~-~~~~~~CPvCR~ 321 (427)
..+.||...+. +...+..=.|.--||..|+.---... ......||.|+.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 34569988764 35566555799999999995322211 113689999975
No 180
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.49 E-value=66 Score=25.11 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=16.0
Q ss_pred ccccccccccccc-cceeEEcCCCCcccHHH
Q 014284 272 MQTCGVCSKLLSE-LCVVAVLTCGHLYHADC 301 (427)
Q Consensus 272 ~~~C~ICld~l~~-~~vv~~LpCGHvFH~~C 301 (427)
...|+.|.+.+.. ..++.. =|..||.+|
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C 33 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHY--KNRFWHDTC 33 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEE--TTEEEETTT
T ss_pred CCcCcccCCcccCCceEEEE--CccChhhcC
Confidence 3467777776652 333322 366777766
No 181
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.31 E-value=2e+02 Score=21.54 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=12.8
Q ss_pred CCCCCccccCCccchHHH
Q 014284 313 DPACPVCTLGEKKTHKLS 330 (427)
Q Consensus 313 ~~~CPvCR~~~~~~~kL~ 330 (427)
.+.|++|...+.....|.
T Consensus 73 ~~~C~~C~~~f~~~~~L~ 90 (106)
T 2ee8_A 73 PFKCQECGKGFCQSRTLA 90 (106)
T ss_dssp TTSCSSSCCCCSSHHHHH
T ss_pred CeECCCcCCcccCHHHHH
Confidence 578888888776655544
No 182
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.17 E-value=39 Score=28.55 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=16.3
Q ss_pred cCCCCcccHHHHHHHHHhcCCCCCCCCccccCC
Q 014284 291 LTCGHLYHADCLENITAEINKYDPACPVCTLGE 323 (427)
Q Consensus 291 LpCGHvFH~~CI~~Wl~~~~~~~~~CPvCR~~~ 323 (427)
..||+.|. ..-.....||.|+...
T Consensus 71 ~~CG~~F~---------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK---------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC---------CCSSCCSSCSSSCCCC
T ss_pred hhCcCeec---------ccCCCCCCCcCCCCCc
Confidence 67999991 1112367899999754
Done!