Query 014285
Match_columns 427
No_of_seqs 265 out of 1588
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03318 MLE Muconate Lactonizi 100.0 1.3E-68 2.8E-73 540.1 39.6 353 66-426 1-363 (365)
2 TIGR02534 mucon_cyclo muconate 100.0 1.3E-68 2.9E-73 540.3 38.7 352 67-426 1-362 (368)
3 cd03317 NAAAR N-acylamino acid 100.0 1.4E-65 3.1E-70 516.0 40.1 344 70-426 1-352 (354)
4 cd03323 D-glucarate_dehydratas 100.0 3.6E-65 7.8E-70 518.1 37.4 345 66-426 1-385 (395)
5 cd03328 MR_like_3 Mandelate ra 100.0 4.3E-65 9.4E-70 511.2 36.9 338 66-423 1-351 (352)
6 cd03321 mandelate_racemase Man 100.0 6.2E-65 1.4E-69 511.1 35.3 343 65-426 1-351 (355)
7 PRK15072 bifunctional D-altron 100.0 1.5E-63 3.3E-68 508.5 37.9 338 65-426 1-381 (404)
8 cd03329 MR_like_4 Mandelate ra 100.0 1.5E-63 3.3E-68 503.4 37.1 342 66-426 1-365 (368)
9 cd03325 D-galactonate_dehydrat 100.0 4.3E-63 9.3E-68 497.1 36.5 330 66-422 1-352 (352)
10 PRK14017 galactonate dehydrata 100.0 3.1E-63 6.8E-68 503.3 35.6 335 65-426 1-357 (382)
11 cd03316 MR_like Mandelate race 100.0 1.1E-62 2.4E-67 495.6 37.6 340 66-420 1-357 (357)
12 cd03326 MR_like_1 Mandelate ra 100.0 3.5E-62 7.6E-67 494.1 37.9 334 70-426 3-379 (385)
13 cd03322 rpsA The starvation se 100.0 8E-62 1.7E-66 489.3 35.7 330 66-426 1-338 (361)
14 cd03327 MR_like_2 Mandelate ra 100.0 1.3E-61 2.9E-66 484.4 35.3 309 95-422 11-341 (341)
15 cd03324 rTSbeta_L-fuconate_deh 100.0 4.1E-61 8.8E-66 490.0 36.6 343 65-422 1-415 (415)
16 TIGR03247 glucar-dehydr glucar 100.0 2.7E-60 5.9E-65 486.5 37.2 346 65-426 4-402 (441)
17 COG4948 L-alanine-DL-glutamate 100.0 2.2E-60 4.8E-65 481.2 34.5 349 65-426 1-363 (372)
18 TIGR01928 menC_lowGC/arch o-su 100.0 3.6E-59 7.8E-64 463.6 36.5 317 73-402 1-323 (324)
19 PRK15129 L-Ala-D/L-Glu epimera 100.0 7E-58 1.5E-62 453.7 38.7 316 69-411 3-321 (321)
20 cd03319 L-Ala-DL-Glu_epimerase 100.0 2.3E-57 5E-62 449.7 39.5 310 69-390 1-313 (316)
21 PRK15440 L-rhamnonate dehydrat 100.0 2.6E-57 5.6E-62 459.2 34.6 343 52-426 16-387 (394)
22 cd03315 MLE_like Muconate lact 100.0 2.7E-55 5.8E-60 424.5 32.9 257 70-382 1-259 (265)
23 TIGR01927 menC_gamma/gm+ o-suc 100.0 2.1E-52 4.5E-57 411.7 31.6 288 73-392 1-295 (307)
24 cd03320 OSBS o-Succinylbenzoat 100.0 9.8E-53 2.1E-57 406.1 27.6 250 71-382 2-255 (263)
25 PRK05105 O-succinylbenzoate sy 100.0 2E-50 4.3E-55 400.2 32.7 295 68-398 2-302 (322)
26 PRK02714 O-succinylbenzoate sy 100.0 5.2E-50 1.1E-54 397.0 32.0 282 69-381 4-292 (320)
27 TIGR01502 B_methylAsp_ase meth 100.0 3.5E-49 7.5E-54 398.6 35.3 286 92-382 48-377 (408)
28 cd03314 MAL Methylaspartate am 100.0 2.8E-49 6E-54 395.3 31.1 288 93-384 12-343 (369)
29 PLN02980 2-oxoglutarate decarb 100.0 5.3E-49 1.2E-53 457.2 37.3 313 49-380 921-1266(1655)
30 cd00308 enolase_like Enolase-s 100.0 2.2E-48 4.8E-53 368.4 25.5 225 70-386 1-228 (229)
31 PRK02901 O-succinylbenzoate sy 100.0 9.7E-43 2.1E-47 344.2 29.2 280 71-426 13-299 (327)
32 PRK00077 eno enolase; Provisio 100.0 2.9E-38 6.4E-43 323.3 32.2 297 65-379 2-382 (425)
33 cd03313 enolase Enolase: Enola 100.0 1.6E-37 3.4E-42 316.4 28.8 281 93-381 13-382 (408)
34 TIGR01060 eno phosphopyruvate 100.0 3.4E-37 7.3E-42 315.5 30.3 282 93-380 15-384 (425)
35 PLN00191 enolase 100.0 4.2E-31 9.2E-36 270.4 32.9 297 65-381 26-416 (457)
36 PTZ00081 enolase; Provisional 100.0 1.3E-28 2.7E-33 251.3 33.1 296 65-382 2-403 (439)
37 COG1441 MenC O-succinylbenzoat 100.0 4.2E-28 9.1E-33 219.4 18.2 275 69-379 3-282 (321)
38 PF02746 MR_MLE_N: Mandelate r 99.9 1.2E-21 2.7E-26 166.2 15.9 115 68-188 2-117 (117)
39 PF13378 MR_MLE_C: Enolase C-t 99.8 4.5E-21 9.8E-26 161.1 9.9 106 310-420 1-111 (111)
40 COG0148 Eno Enolase [Carbohydr 99.8 9E-18 1.9E-22 164.1 26.4 285 93-383 18-383 (423)
41 PRK08350 hypothetical protein; 99.8 8.9E-18 1.9E-22 162.7 23.0 272 93-384 18-310 (341)
42 PF01188 MR_MLE: Mandelate rac 99.7 2E-16 4.4E-21 120.6 8.5 66 237-310 1-67 (67)
43 PTZ00378 hypothetical protein; 99.7 6.8E-14 1.5E-18 142.8 29.4 294 65-382 49-452 (518)
44 KOG2670 Enolase [Carbohydrate 99.6 5E-13 1.1E-17 127.2 20.4 250 125-383 65-394 (433)
45 PF00113 Enolase_C: Enolase, C 99.2 1.6E-10 3.4E-15 112.6 13.5 166 202-382 76-255 (295)
46 COG3799 Mal Methylaspartate am 99.2 9.1E-10 2E-14 104.0 17.3 281 93-379 50-375 (410)
47 PF07476 MAAL_C: Methylasparta 99.2 3.6E-10 7.9E-15 103.2 14.1 159 220-382 36-218 (248)
48 cd02801 DUS_like_FMN Dihydrour 99.0 7E-09 1.5E-13 98.0 15.9 143 185-334 46-213 (231)
49 cd02932 OYE_YqiM_FMN Old yello 99.0 7.2E-09 1.6E-13 103.8 14.7 120 208-333 156-319 (336)
50 cd04733 OYE_like_2_FMN Old yel 98.7 5.3E-07 1.1E-11 90.4 15.1 120 208-333 151-321 (338)
51 cd02803 OYE_like_FMN_family Ol 98.6 1.1E-06 2.4E-11 87.6 14.7 119 209-333 144-310 (327)
52 cd02930 DCR_FMN 2,4-dienoyl-Co 98.5 2E-06 4.4E-11 86.7 13.9 122 208-333 139-305 (353)
53 PF03952 Enolase_N: Enolase, N 98.3 2.8E-05 6E-10 67.1 13.8 95 93-187 16-132 (132)
54 PF05034 MAAL_N: Methylasparta 97.3 0.0032 7E-08 54.8 10.8 94 92-185 49-151 (159)
55 PRK10550 tRNA-dihydrouridine s 97.2 0.011 2.4E-07 58.7 14.7 144 192-339 61-229 (312)
56 PRK10415 tRNA-dihydrouridine s 97.1 0.018 3.9E-07 57.4 15.1 139 194-339 65-229 (321)
57 PF01207 Dus: Dihydrouridine s 96.8 0.016 3.4E-07 57.5 12.0 143 185-334 45-213 (309)
58 cd02931 ER_like_FMN Enoate red 96.7 0.049 1.1E-06 55.6 15.2 122 210-333 154-334 (382)
59 COG0042 tRNA-dihydrouridine sy 96.6 0.061 1.3E-06 53.6 15.1 141 192-339 65-233 (323)
60 PRK11815 tRNA-dihydrouridine s 96.6 0.15 3.2E-06 51.2 17.6 143 186-336 57-235 (333)
61 cd04734 OYE_like_3_FMN Old yel 96.5 0.094 2E-06 52.8 15.5 120 209-334 144-315 (343)
62 cd02810 DHOD_DHPD_FMN Dihydroo 96.4 0.065 1.4E-06 52.4 13.1 133 193-333 98-271 (289)
63 TIGR00737 nifR3_yhdG putative 96.3 0.13 2.9E-06 51.1 15.4 138 191-335 60-223 (319)
64 TIGR00742 yjbN tRNA dihydrouri 96.2 0.24 5.2E-06 49.3 16.3 145 186-338 47-227 (318)
65 PRK07259 dihydroorotate dehydr 96.1 0.21 4.5E-06 49.2 15.2 132 194-335 92-264 (301)
66 TIGR00736 nifR3_rel_arch TIM-b 96.1 0.26 5.6E-06 46.8 14.9 131 193-333 67-219 (231)
67 PRK10605 N-ethylmaleimide redu 96.1 0.13 2.8E-06 52.2 13.8 121 210-333 163-320 (362)
68 cd04747 OYE_like_5_FMN Old yel 96.0 0.19 4.2E-06 50.9 14.5 119 209-333 147-327 (361)
69 PRK13523 NADPH dehydrogenase N 95.8 0.2 4.3E-06 50.3 13.6 118 210-333 146-304 (337)
70 PRK08255 salicylyl-CoA 5-hydro 95.7 0.21 4.5E-06 55.8 14.8 122 210-333 555-716 (765)
71 TIGR00735 hisF imidazoleglycer 95.6 0.26 5.6E-06 47.4 13.3 153 194-357 75-253 (254)
72 COG1902 NemA NADH:flavin oxido 95.4 0.33 7.2E-06 49.2 13.7 125 209-333 152-317 (363)
73 cd04740 DHOD_1B_like Dihydroor 95.4 0.58 1.3E-05 45.9 15.2 135 194-338 90-264 (296)
74 cd00377 ICL_PEPM Members of th 95.2 0.2 4.3E-06 47.9 10.9 103 201-310 79-202 (243)
75 cd02911 arch_FMN Archeal FMN-b 95.0 1.1 2.4E-05 42.5 15.1 130 195-335 74-221 (233)
76 cd02933 OYE_like_FMN Old yello 94.8 0.92 2E-05 45.6 14.8 118 209-333 155-313 (338)
77 cd04735 OYE_like_4_FMN Old yel 94.5 0.58 1.3E-05 47.3 12.7 117 209-330 147-309 (353)
78 TIGR01037 pyrD_sub1_fam dihydr 94.5 0.94 2E-05 44.5 13.8 153 194-356 91-290 (300)
79 cd02929 TMADH_HD_FMN Trimethyl 94.3 0.99 2.2E-05 45.9 14.0 123 209-334 153-319 (370)
80 PRK02083 imidazole glycerol ph 94.1 1.2 2.7E-05 42.5 13.4 153 194-357 75-251 (253)
81 TIGR01182 eda Entner-Doudoroff 93.7 1.1 2.5E-05 41.6 11.9 96 259-367 18-114 (204)
82 PRK09140 2-dehydro-3-deoxy-6-p 93.5 5.2 0.00011 37.2 16.0 144 200-363 16-160 (206)
83 PF00724 Oxidored_FMN: NADH:fl 93.4 0.48 1E-05 47.6 9.5 124 210-333 153-320 (341)
84 PRK06552 keto-hydroxyglutarate 93.2 4.8 0.0001 37.7 15.3 143 200-363 19-164 (213)
85 PLN02617 imidazole glycerol ph 92.6 2 4.4E-05 45.8 13.3 159 194-357 315-536 (538)
86 PRK12330 oxaloacetate decarbox 92.1 18 0.00039 38.3 19.7 165 204-371 25-217 (499)
87 PRK01033 imidazole glycerol ph 92.1 3.1 6.7E-05 40.1 12.8 129 194-333 75-225 (258)
88 cd04731 HisF The cyclase subun 92.0 4.4 9.5E-05 38.4 13.8 147 194-351 72-241 (243)
89 PRK11320 prpB 2-methylisocitra 91.7 8 0.00017 38.0 15.3 110 193-309 78-207 (292)
90 TIGR01182 eda Entner-Doudoroff 91.7 11 0.00024 35.0 15.7 142 200-363 14-157 (204)
91 cd03174 DRE_TIM_metallolyase D 91.4 11 0.00023 36.0 15.8 157 204-370 17-206 (265)
92 TIGR02317 prpB methylisocitrat 91.3 8.9 0.00019 37.6 15.1 109 193-308 73-201 (285)
93 PRK06015 keto-hydroxyglutarate 91.2 2.2 4.8E-05 39.6 10.3 96 259-367 14-110 (201)
94 TIGR02321 Pphn_pyruv_hyd phosp 91.0 12 0.00026 36.8 15.7 113 193-309 75-210 (290)
95 TIGR02319 CPEP_Pphonmut carbox 90.9 9.7 0.00021 37.5 15.0 151 193-354 77-255 (294)
96 COG0106 HisA Phosphoribosylfor 90.8 6.3 0.00014 37.5 13.0 141 195-346 77-237 (241)
97 PRK06015 keto-hydroxyglutarate 90.4 14 0.0003 34.4 14.7 142 200-363 10-153 (201)
98 cd06660 Aldo_ket_red Aldo-keto 90.2 12 0.00027 35.9 15.2 158 204-366 27-204 (285)
99 COG0821 gcpE 1-hydroxy-2-methy 90.1 2.6 5.6E-05 41.7 10.0 70 289-364 63-133 (361)
100 PRK06552 keto-hydroxyglutarate 89.8 3 6.6E-05 39.0 10.0 99 259-367 23-122 (213)
101 TIGR02320 PEP_mutase phosphoen 89.6 12 0.00025 36.8 14.3 105 203-309 89-216 (285)
102 COG0800 Eda 2-keto-3-deoxy-6-p 89.5 3.3 7.1E-05 38.6 9.8 94 259-365 23-117 (211)
103 PRK00748 1-(5-phosphoribosyl)- 89.3 9 0.00019 35.9 13.1 130 194-334 75-220 (233)
104 PRK14024 phosphoribosyl isomer 89.0 8.8 0.00019 36.5 12.8 133 194-336 76-224 (241)
105 TIGR03572 WbuZ glycosyl amidat 88.8 9.8 0.00021 35.7 13.0 130 194-333 75-226 (232)
106 PLN02411 12-oxophytodienoate r 88.6 8.6 0.00019 39.4 13.2 122 209-333 168-341 (391)
107 PF01081 Aldolase: KDPG and KH 88.5 2.8 6.2E-05 38.7 8.7 97 258-367 17-114 (196)
108 cd04732 HisA HisA. Phosphorib 88.3 9.7 0.00021 35.6 12.6 129 194-334 74-219 (234)
109 cd07943 DRE_TIM_HOA 4-hydroxy- 88.3 6.1 0.00013 38.0 11.3 101 255-361 16-132 (263)
110 PRK13587 1-(5-phosphoribosyl)- 88.3 13 0.00029 35.2 13.4 128 194-333 77-220 (234)
111 cd00945 Aldolase_Class_I Class 88.1 19 0.00041 32.2 14.8 130 193-326 48-194 (201)
112 TIGR00612 ispG_gcpE 1-hydroxy- 88.1 4.7 0.0001 40.1 10.3 96 260-363 33-130 (346)
113 cd00452 KDPG_aldolase KDPG and 88.0 21 0.00045 32.5 15.3 139 201-362 11-151 (190)
114 PRK07114 keto-hydroxyglutarate 87.7 5.9 0.00013 37.4 10.4 99 259-367 25-125 (222)
115 PRK00366 ispG 4-hydroxy-3-meth 87.7 5.7 0.00012 39.8 10.7 96 260-363 41-139 (360)
116 PRK12581 oxaloacetate decarbox 87.5 41 0.00088 35.4 17.8 163 204-371 33-223 (468)
117 PRK13585 1-(5-phosphoribosyl)- 87.5 8.7 0.00019 36.2 11.8 129 195-334 78-222 (241)
118 cd07944 DRE_TIM_HOA_like 4-hyd 87.4 8.8 0.00019 37.1 11.8 104 255-361 14-129 (266)
119 PF13714 PEP_mutase: Phosphoen 87.0 8.5 0.00018 36.7 11.2 135 193-336 69-221 (238)
120 COG0800 Eda 2-keto-3-deoxy-6-p 86.9 10 0.00022 35.3 11.3 143 200-363 19-162 (211)
121 cd06556 ICL_KPHMT Members of t 86.9 8.5 0.00018 36.7 11.1 95 204-309 87-196 (240)
122 PRK09282 pyruvate carboxylase 86.8 51 0.0011 35.8 19.2 164 204-371 24-214 (592)
123 PRK14042 pyruvate carboxylase 86.4 54 0.0012 35.6 19.5 163 204-371 24-214 (596)
124 PRK14040 oxaloacetate decarbox 86.1 56 0.0012 35.5 19.7 163 204-371 25-215 (593)
125 cd02940 DHPD_FMN Dihydropyrimi 85.8 26 0.00057 34.4 14.5 132 194-338 100-285 (299)
126 TIGR03217 4OH_2_O_val_ald 4-hy 85.7 20 0.00044 35.9 13.7 141 213-356 94-246 (333)
127 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.6 36 0.00079 33.0 17.6 163 204-370 19-208 (275)
128 TIGR01304 IMP_DH_rel_2 IMP deh 85.6 35 0.00076 34.7 15.4 89 232-332 119-214 (369)
129 cd03174 DRE_TIM_metallolyase D 85.6 20 0.00043 34.1 13.3 99 211-309 79-195 (265)
130 TIGR03217 4OH_2_O_val_ald 4-hy 85.5 14 0.00029 37.1 12.3 103 255-361 18-134 (333)
131 PRK05718 keto-hydroxyglutarate 85.4 7.7 0.00017 36.3 9.9 96 257-365 23-119 (212)
132 PRK14114 1-(5-phosphoribosyl)- 85.2 9.3 0.0002 36.4 10.6 131 198-339 78-229 (241)
133 PRK05458 guanosine 5'-monophos 84.7 32 0.0007 34.4 14.5 122 207-336 97-232 (326)
134 cd04738 DHOD_2_like Dihydrooro 84.6 16 0.00036 36.3 12.5 133 194-334 129-309 (327)
135 cd07940 DRE_TIM_IPMS 2-isoprop 84.5 11 0.00024 36.4 10.9 103 256-364 15-137 (268)
136 PRK12331 oxaloacetate decarbox 84.3 57 0.0012 34.1 18.9 164 204-371 24-214 (448)
137 PF01081 Aldolase: KDPG and KH 83.7 21 0.00045 33.0 11.8 142 200-363 14-157 (196)
138 PRK08649 inosine 5-monophospha 83.7 25 0.00054 35.8 13.4 78 288-371 175-273 (368)
139 PRK07709 fructose-bisphosphate 83.5 13 0.00028 36.5 10.9 118 212-336 93-235 (285)
140 PRK07535 methyltetrahydrofolat 83.4 14 0.0003 35.7 11.0 146 203-361 22-196 (261)
141 PRK01130 N-acetylmannosamine-6 83.3 39 0.00084 31.4 15.1 116 210-338 79-206 (221)
142 PRK12738 kbaY tagatose-bisphos 82.9 10 0.00023 37.1 10.0 56 302-358 72-132 (286)
143 PRK09195 gatY tagatose-bisphos 82.8 13 0.00028 36.5 10.5 115 211-335 89-233 (284)
144 PRK08195 4-hyroxy-2-oxovalerat 82.6 32 0.00069 34.6 13.6 141 213-356 95-247 (337)
145 PRK12331 oxaloacetate decarbox 82.2 29 0.00064 36.3 13.6 101 209-309 99-202 (448)
146 PRK12737 gatY tagatose-bisphos 81.9 15 0.00032 36.0 10.6 119 211-336 89-234 (284)
147 COG0107 HisF Imidazoleglycerol 81.8 21 0.00045 33.8 10.9 153 194-357 75-253 (256)
148 PRK07998 gatY putative fructos 81.8 22 0.00049 34.7 11.8 117 212-336 90-231 (283)
149 cd00956 Transaldolase_FSA Tran 81.7 40 0.00087 31.4 13.1 110 236-356 41-157 (211)
150 TIGR01858 tag_bisphos_ald clas 81.5 13 0.00029 36.3 10.1 57 301-358 69-130 (282)
151 KOG2335 tRNA-dihydrouridine sy 81.5 59 0.0013 32.7 14.6 152 193-355 73-268 (358)
152 PRK06801 hypothetical protein; 81.5 14 0.00029 36.3 10.2 56 301-357 71-131 (286)
153 PRK09234 fbiC FO synthase; Rev 81.0 9.8 0.00021 43.0 10.1 126 204-362 558-687 (843)
154 PLN02446 (5-phosphoribosyl)-5- 80.7 30 0.00066 33.4 12.1 134 210-348 95-258 (262)
155 PRK07114 keto-hydroxyglutarate 80.5 52 0.0011 31.0 14.5 142 200-363 21-167 (222)
156 cd04723 HisA_HisF Phosphoribos 80.1 31 0.00067 32.6 12.0 126 195-333 80-217 (233)
157 PRK14041 oxaloacetate decarbox 80.1 84 0.0018 33.1 17.6 164 204-371 23-213 (467)
158 cd07944 DRE_TIM_HOA_like 4-hyd 80.0 28 0.0006 33.7 11.8 92 217-309 93-188 (266)
159 cd00947 TBP_aldolase_IIB Tagat 80.0 18 0.00039 35.2 10.5 56 302-358 67-127 (276)
160 PRK09195 gatY tagatose-bisphos 79.9 24 0.00051 34.6 11.3 56 302-358 72-132 (284)
161 TIGR01769 GGGP geranylgeranylg 79.4 13 0.00029 34.5 8.9 71 258-333 131-204 (205)
162 cd07943 DRE_TIM_HOA 4-hydroxy- 79.3 27 0.00058 33.6 11.5 97 212-309 91-190 (263)
163 PRK08610 fructose-bisphosphate 79.3 22 0.00048 34.8 10.8 118 212-336 93-235 (286)
164 TIGR02090 LEU1_arch isopropylm 79.2 18 0.00038 36.7 10.6 99 256-361 17-132 (363)
165 TIGR01859 fruc_bis_ald_ fructo 79.1 23 0.00049 34.7 10.9 56 302-358 71-132 (282)
166 TIGR01858 tag_bisphos_ald clas 79.1 21 0.00045 35.0 10.5 115 212-336 88-232 (282)
167 PRK08195 4-hyroxy-2-oxovalerat 79.1 29 0.00063 34.8 11.9 100 255-361 19-135 (337)
168 PRK12737 gatY tagatose-bisphos 79.0 16 0.00035 35.8 9.8 56 302-358 72-132 (284)
169 cd07937 DRE_TIM_PC_TC_5S Pyruv 78.5 30 0.00066 33.5 11.6 101 209-309 94-197 (275)
170 PTZ00314 inosine-5'-monophosph 78.2 42 0.0009 35.6 13.3 107 248-363 228-353 (495)
171 PRK12999 pyruvate carboxylase; 77.9 1.5E+02 0.0033 34.9 19.2 163 204-371 553-751 (1146)
172 PRK06806 fructose-bisphosphate 77.8 23 0.0005 34.6 10.6 56 302-358 72-132 (281)
173 cd04722 TIM_phosphate_binding 77.4 49 0.0011 29.0 12.9 112 212-333 77-198 (200)
174 TIGR01108 oadA oxaloacetate de 77.4 1.1E+02 0.0024 33.1 18.7 165 204-372 19-210 (582)
175 PRK06801 hypothetical protein; 77.3 56 0.0012 32.0 13.0 120 212-338 90-237 (286)
176 PRK12857 fructose-1,6-bisphosp 76.9 28 0.00061 34.1 10.8 118 212-336 90-234 (284)
177 cd00381 IMPDH IMPDH: The catal 76.9 83 0.0018 31.4 15.2 119 208-334 95-226 (325)
178 TIGR03128 RuMP_HxlA 3-hexulose 76.8 14 0.0003 33.9 8.4 96 257-360 8-108 (206)
179 cd00947 TBP_aldolase_IIB Tagat 76.7 27 0.00058 34.1 10.5 116 213-335 86-227 (276)
180 PRK12738 kbaY tagatose-bisphos 76.7 27 0.00059 34.2 10.6 120 211-337 89-235 (286)
181 TIGR03128 RuMP_HxlA 3-hexulose 76.6 42 0.00092 30.6 11.6 123 200-337 6-136 (206)
182 TIGR01496 DHPS dihydropteroate 76.6 74 0.0016 30.6 14.3 63 203-265 20-93 (257)
183 cd07939 DRE_TIM_NifV Streptomy 76.3 32 0.00069 32.9 11.0 70 239-308 117-186 (259)
184 PRK05096 guanosine 5'-monophos 76.2 90 0.002 31.4 16.0 129 203-363 79-222 (346)
185 PRK14041 oxaloacetate decarbox 76.0 51 0.0011 34.7 13.1 100 210-309 99-201 (467)
186 TIGR01302 IMP_dehydrog inosine 76.0 73 0.0016 33.3 14.3 129 207-339 224-361 (450)
187 TIGR02129 hisA_euk phosphoribo 75.8 40 0.00087 32.4 11.3 131 194-335 77-234 (253)
188 cd02812 PcrB_like PcrB_like pr 75.7 24 0.00052 33.2 9.6 80 251-335 125-205 (219)
189 PRK09140 2-dehydro-3-deoxy-6-p 75.6 42 0.0009 31.2 11.2 93 259-365 20-115 (206)
190 PRK09282 pyruvate carboxylase 75.6 48 0.001 36.0 13.2 100 210-309 100-202 (592)
191 PRK05718 keto-hydroxyglutarate 75.4 71 0.0015 29.8 14.5 142 200-363 21-164 (212)
192 PRK12330 oxaloacetate decarbox 75.3 54 0.0012 34.8 13.0 146 208-356 99-258 (499)
193 PRK05286 dihydroorotate dehydr 75.3 27 0.00058 35.1 10.5 136 194-335 138-319 (344)
194 PLN02858 fructose-bisphosphate 75.2 21 0.00045 42.7 11.1 96 256-358 1120-1227(1378)
195 cd00954 NAL N-Acetylneuraminic 75.1 85 0.0018 30.5 14.4 148 204-360 19-187 (288)
196 PF00682 HMGL-like: HMGL-like 74.9 26 0.00056 32.9 9.8 105 205-309 66-186 (237)
197 PRK07709 fructose-bisphosphate 74.6 41 0.00088 33.0 11.2 54 304-358 77-135 (285)
198 PF04131 NanE: Putative N-acet 74.1 55 0.0012 30.0 11.1 107 209-331 54-171 (192)
199 PRK07455 keto-hydroxyglutarate 74.0 70 0.0015 29.1 14.4 141 200-363 18-161 (187)
200 PRK07807 inosine 5-monophospha 73.9 25 0.00054 37.1 10.2 126 207-337 227-362 (479)
201 PRK05835 fructose-bisphosphate 73.9 28 0.00061 34.5 9.9 56 302-358 71-132 (307)
202 cd06557 KPHMT-like Ketopantoat 73.5 22 0.00047 34.3 8.9 95 203-308 87-197 (254)
203 TIGR00167 cbbA ketose-bisphosp 73.5 36 0.00078 33.4 10.6 119 212-336 93-238 (288)
204 PRK12857 fructose-1,6-bisphosp 73.5 29 0.00063 34.0 9.9 56 302-358 72-132 (284)
205 PRK08185 hypothetical protein; 73.3 30 0.00066 33.9 10.0 56 302-358 66-126 (283)
206 PTZ00314 inosine-5'-monophosph 73.1 1.3E+02 0.0029 31.9 16.8 121 209-339 243-378 (495)
207 cd07939 DRE_TIM_NifV Streptomy 73.0 75 0.0016 30.4 12.7 104 256-366 15-135 (259)
208 cd04729 NanE N-acetylmannosami 73.0 79 0.0017 29.3 14.2 111 210-335 83-207 (219)
209 PRK07315 fructose-bisphosphate 72.7 42 0.00091 33.0 10.9 54 304-358 77-134 (293)
210 TIGR00167 cbbA ketose-bisphosp 72.7 35 0.00076 33.5 10.3 56 302-358 73-135 (288)
211 PRK07565 dihydroorotate dehydr 72.6 1.1E+02 0.0023 30.6 14.3 133 194-336 102-270 (334)
212 PRK14042 pyruvate carboxylase 72.5 39 0.00085 36.7 11.5 146 205-355 94-254 (596)
213 COG0159 TrpA Tryptophan syntha 72.1 99 0.0021 30.0 14.0 161 197-363 22-236 (265)
214 TIGR01303 IMP_DH_rel_1 IMP deh 72.0 1.1E+02 0.0025 32.2 14.6 118 207-334 225-357 (475)
215 TIGR01521 FruBisAldo_II_B fruc 71.1 54 0.0012 33.0 11.3 56 302-358 70-138 (347)
216 cd07948 DRE_TIM_HCS Saccharomy 71.0 58 0.0012 31.4 11.3 49 259-307 139-187 (262)
217 PRK05927 hypothetical protein; 70.9 47 0.001 33.5 11.1 125 203-362 76-206 (350)
218 PF00977 His_biosynth: Histidi 70.8 5.3 0.00011 37.7 4.0 128 194-333 74-219 (229)
219 PRK11858 aksA trans-homoaconit 70.8 71 0.0015 32.6 12.5 100 257-363 22-138 (378)
220 PRK13399 fructose-1,6-bisphosp 70.3 44 0.00095 33.7 10.5 56 302-358 72-140 (347)
221 cd04739 DHOD_like Dihydroorota 70.3 1.2E+02 0.0026 30.2 17.5 155 194-356 100-294 (325)
222 PRK04128 1-(5-phosphoribosyl)- 70.2 98 0.0021 29.1 13.1 124 194-333 74-210 (228)
223 PRK08508 biotin synthase; Prov 70.2 1E+02 0.0023 29.8 13.1 150 203-353 40-216 (279)
224 PRK05567 inosine 5'-monophosph 70.1 70 0.0015 33.8 12.7 113 247-366 214-343 (486)
225 TIGR00007 phosphoribosylformim 70.0 71 0.0015 29.7 11.6 127 195-333 74-217 (230)
226 KOG2550 IMP dehydrogenase/GMP 69.9 66 0.0014 33.1 11.5 100 232-363 250-363 (503)
227 PRK09196 fructose-1,6-bisphosp 69.8 59 0.0013 32.8 11.3 56 302-358 72-140 (347)
228 cd00956 Transaldolase_FSA Tran 69.8 27 0.00059 32.5 8.5 127 196-335 54-186 (211)
229 cd04726 KGPDC_HPS 3-Keto-L-gul 69.7 28 0.0006 31.7 8.5 101 248-359 3-108 (202)
230 COG1167 ARO8 Transcriptional r 69.5 20 0.00042 37.6 8.3 96 260-361 164-267 (459)
231 TIGR01302 IMP_dehydrog inosine 69.4 85 0.0018 32.8 13.0 109 248-365 211-338 (450)
232 PRK07998 gatY putative fructos 69.4 36 0.00078 33.3 9.5 55 302-357 72-131 (283)
233 COG0042 tRNA-dihydrouridine sy 69.2 20 0.00044 35.7 8.0 76 193-270 136-220 (323)
234 PLN02274 inosine-5'-monophosph 69.2 88 0.0019 33.3 13.1 109 249-365 236-362 (505)
235 PF00248 Aldo_ket_red: Aldo/ke 69.1 60 0.0013 31.0 11.2 160 203-367 14-194 (283)
236 cd00739 DHPS DHPS subgroup of 69.0 1.1E+02 0.0024 29.4 14.5 62 203-268 21-94 (257)
237 TIGR02660 nifV_homocitr homoci 68.8 85 0.0019 31.8 12.6 101 257-364 19-136 (365)
238 PRK00694 4-hydroxy-3-methylbut 68.6 1.7E+02 0.0037 31.5 14.7 163 203-379 42-227 (606)
239 TIGR01859 fruc_bis_ald_ fructo 68.5 1.1E+02 0.0024 29.9 12.8 121 211-338 89-234 (282)
240 PRK04165 acetyl-CoA decarbonyl 68.2 1.3E+02 0.0028 31.6 13.8 126 204-343 103-241 (450)
241 cd07948 DRE_TIM_HCS Saccharomy 68.0 73 0.0016 30.7 11.3 99 256-361 17-132 (262)
242 PRK08610 fructose-bisphosphate 67.9 73 0.0016 31.3 11.3 54 304-358 77-135 (286)
243 TIGR01108 oadA oxaloacetate de 67.6 1E+02 0.0022 33.4 13.4 101 209-309 94-197 (582)
244 COG2513 PrpB PEP phosphonomuta 67.5 1.3E+02 0.0028 29.5 13.4 156 193-354 78-256 (289)
245 cd02809 alpha_hydroxyacid_oxid 67.2 1.3E+02 0.0028 29.4 14.2 102 259-368 127-241 (299)
246 PF00682 HMGL-like: HMGL-like 67.1 69 0.0015 29.9 10.9 174 204-385 12-210 (237)
247 PLN02495 oxidoreductase, actin 66.8 76 0.0017 32.5 11.6 73 235-309 101-187 (385)
248 PRK08185 hypothetical protein; 66.7 86 0.0019 30.7 11.5 120 212-337 84-231 (283)
249 PLN02274 inosine-5'-monophosph 66.7 1.3E+02 0.0028 32.1 13.7 132 194-339 237-385 (505)
250 PRK03620 5-dehydro-4-deoxygluc 66.6 1.4E+02 0.0029 29.4 16.9 148 204-360 26-189 (303)
251 TIGR01919 hisA-trpF 1-(5-phosp 66.6 87 0.0019 29.8 11.4 127 198-335 79-226 (243)
252 PRK13111 trpA tryptophan synth 66.5 1.3E+02 0.0028 29.0 14.8 158 196-363 16-209 (258)
253 PF05913 DUF871: Bacterial pro 66.5 36 0.00078 34.5 9.1 143 204-358 12-173 (357)
254 PF01116 F_bP_aldolase: Fructo 66.0 16 0.00034 35.9 6.3 56 302-358 71-131 (287)
255 TIGR01520 FruBisAldo_II_A fruc 66.0 53 0.0011 33.2 10.0 57 302-358 97-170 (357)
256 cd00452 KDPG_aldolase KDPG and 65.9 77 0.0017 28.7 10.6 91 259-363 14-106 (190)
257 PRK00311 panB 3-methyl-2-oxobu 65.5 47 0.001 32.2 9.4 94 204-308 91-200 (264)
258 PRK05835 fructose-bisphosphate 64.6 69 0.0015 31.8 10.5 95 212-312 90-212 (307)
259 TIGR00973 leuA_bact 2-isopropy 64.6 45 0.00098 35.3 9.9 121 253-379 11-155 (494)
260 PRK06843 inosine 5-monophospha 64.6 87 0.0019 32.3 11.6 136 193-335 141-286 (404)
261 PRK05692 hydroxymethylglutaryl 64.3 85 0.0019 30.7 11.1 93 257-358 22-137 (287)
262 cd00951 KDGDH 5-dehydro-4-deox 63.1 1.5E+02 0.0033 28.8 16.8 149 204-361 19-183 (289)
263 CHL00200 trpA tryptophan synth 62.5 1.5E+02 0.0033 28.6 13.8 100 196-297 19-165 (263)
264 TIGR01305 GMP_reduct_1 guanosi 62.3 1.8E+02 0.0039 29.3 15.6 129 203-363 78-221 (343)
265 PRK12581 oxaloacetate decarbox 62.2 1.6E+02 0.0035 31.0 13.1 31 242-272 173-203 (468)
266 PLN02321 2-isopropylmalate syn 62.1 69 0.0015 35.1 10.8 102 257-362 104-232 (632)
267 PRK07107 inosine 5-monophospha 61.6 1.3E+02 0.0028 32.0 12.6 97 259-363 239-361 (502)
268 PRK07084 fructose-bisphosphate 61.4 1.1E+02 0.0025 30.4 11.3 97 211-311 100-224 (321)
269 PRK02048 4-hydroxy-3-methylbut 61.1 2.5E+02 0.0054 30.5 14.4 163 203-379 38-223 (611)
270 PF00478 IMPDH: IMP dehydrogen 61.1 1E+02 0.0022 31.2 11.1 98 262-363 108-220 (352)
271 PRK00278 trpC indole-3-glycero 60.9 51 0.0011 31.7 8.8 77 280-361 91-167 (260)
272 PF04551 GcpE: GcpE protein; 60.7 34 0.00074 34.5 7.5 58 302-362 72-139 (359)
273 cd04741 DHOD_1A_like Dihydroor 60.7 1.7E+02 0.0037 28.6 14.0 141 194-338 92-276 (294)
274 PRK12999 pyruvate carboxylase; 60.5 68 0.0015 37.8 11.1 150 205-355 625-791 (1146)
275 PRK12928 lipoyl synthase; Prov 60.4 1.8E+02 0.0038 28.6 14.4 154 203-362 87-279 (290)
276 PRK07084 fructose-bisphosphate 60.4 63 0.0014 32.3 9.3 54 304-358 85-143 (321)
277 PRK13361 molybdenum cofactor b 60.2 1.6E+02 0.0035 29.2 12.5 134 204-359 46-188 (329)
278 PRK08318 dihydropyrimidine deh 60.1 1.7E+02 0.0037 30.1 13.1 153 195-355 101-309 (420)
279 PRK08508 biotin synthase; Prov 59.7 1.2E+02 0.0026 29.5 11.2 28 340-367 136-166 (279)
280 PF00290 Trp_syntA: Tryptophan 59.1 1.1E+02 0.0023 29.6 10.6 90 196-285 14-151 (259)
281 PRK15108 biotin synthase; Prov 58.8 1.3E+02 0.0028 30.3 11.6 101 259-362 77-192 (345)
282 COG1060 ThiH Thiamine biosynth 58.5 99 0.0021 31.5 10.7 127 203-362 90-220 (370)
283 PRK06806 fructose-bisphosphate 58.4 1.9E+02 0.0041 28.3 13.7 121 211-338 89-234 (281)
284 PRK07315 fructose-bisphosphate 58.1 1.9E+02 0.0042 28.4 13.1 123 211-338 91-236 (293)
285 PLN02746 hydroxymethylglutaryl 58.0 1.2E+02 0.0026 30.6 11.1 93 257-358 64-179 (347)
286 PF01136 Peptidase_U32: Peptid 58.0 83 0.0018 29.3 9.6 78 207-297 3-80 (233)
287 PRK13957 indole-3-glycerol-pho 58.0 1.1E+02 0.0025 29.2 10.4 92 265-361 65-158 (247)
288 PLN02591 tryptophan synthase 57.9 1.8E+02 0.0039 27.9 14.1 99 197-297 7-152 (250)
289 PLN02389 biotin synthase 57.5 1.4E+02 0.0031 30.5 11.7 40 340-379 212-254 (379)
290 PRK09197 fructose-bisphosphate 57.3 86 0.0019 31.7 9.8 57 302-358 90-163 (350)
291 TIGR03249 KdgD 5-dehydro-4-deo 57.1 2E+02 0.0043 28.1 16.6 148 204-360 24-187 (296)
292 PRK00915 2-isopropylmalate syn 56.9 1.1E+02 0.0025 32.5 11.3 121 253-379 14-158 (513)
293 cd00453 FTBP_aldolase_II Fruct 56.3 56 0.0012 32.8 8.2 57 302-358 83-156 (340)
294 TIGR01235 pyruv_carbox pyruvat 55.4 1.3E+02 0.0029 35.3 12.3 131 205-338 623-766 (1143)
295 PLN02925 4-hydroxy-3-methylbut 55.4 3.3E+02 0.0071 30.2 14.5 162 203-378 107-291 (733)
296 cd04726 KGPDC_HPS 3-Keto-L-gul 54.9 1.6E+02 0.0035 26.5 12.0 110 211-333 69-185 (202)
297 COG0191 Fba Fructose/tagatose 54.7 60 0.0013 31.8 7.9 56 302-358 73-133 (286)
298 PF01116 F_bP_aldolase: Fructo 54.0 1.2E+02 0.0025 29.8 10.0 119 211-334 88-235 (287)
299 PRK01033 imidazole glycerol ph 53.0 2.1E+02 0.0046 27.3 13.3 146 209-363 33-205 (258)
300 TIGR00222 panB 3-methyl-2-oxob 52.1 1.8E+02 0.004 28.1 10.8 93 203-308 89-199 (263)
301 TIGR00510 lipA lipoate synthas 52.1 1.8E+02 0.0038 28.8 11.0 160 204-363 92-283 (302)
302 PF00218 IGPS: Indole-3-glycer 52.0 73 0.0016 30.7 8.1 96 258-361 68-165 (254)
303 PRK05437 isopentenyl pyrophosp 51.9 2.7E+02 0.0058 28.1 14.2 99 235-334 108-217 (352)
304 TIGR00284 dihydropteroate synt 51.7 3.3E+02 0.0071 29.0 17.6 140 206-361 165-318 (499)
305 TIGR01521 FruBisAldo_II_B fruc 51.7 2E+02 0.0043 29.1 11.3 119 212-335 89-276 (347)
306 smart00052 EAL Putative diguan 51.1 96 0.0021 28.4 8.8 63 302-366 144-214 (241)
307 PRK15063 isocitrate lyase; Pro 51.0 3.1E+02 0.0067 28.6 14.5 103 194-299 147-300 (428)
308 cd00381 IMPDH IMPDH: The catal 50.8 2.7E+02 0.0058 27.8 14.6 60 305-366 136-209 (325)
309 PLN02746 hydroxymethylglutaryl 50.8 1.5E+02 0.0031 30.0 10.3 20 252-271 217-236 (347)
310 PRK13396 3-deoxy-7-phosphohept 50.7 2.6E+02 0.0056 28.4 12.0 146 200-360 109-277 (352)
311 COG2200 Rtn c-di-GMP phosphodi 50.7 1E+02 0.0022 29.5 8.9 63 302-366 147-217 (256)
312 TIGR01303 IMP_DH_rel_1 IMP deh 50.7 3.3E+02 0.0071 28.8 13.7 112 249-365 213-339 (475)
313 cd03332 LMO_FMN L-Lactate 2-mo 50.4 3E+02 0.0065 28.2 14.1 75 287-367 240-321 (383)
314 PRK07807 inosine 5-monophospha 49.8 3.4E+02 0.0074 28.7 13.7 58 304-363 268-339 (479)
315 PRK14040 oxaloacetate decarbox 49.6 2.3E+02 0.0049 30.9 12.2 29 244-272 167-195 (593)
316 PF00809 Pterin_bind: Pterin b 49.5 1.5E+02 0.0034 27.3 9.8 92 205-309 18-121 (210)
317 TIGR00696 wecB_tagA_cpsF bacte 49.4 2E+02 0.0044 26.0 10.6 79 205-286 34-112 (177)
318 PRK13210 putative L-xylulose 5 49.2 2.4E+02 0.0052 26.8 11.7 21 342-362 134-154 (284)
319 PRK13398 3-deoxy-7-phosphohept 48.8 2.1E+02 0.0045 27.7 10.8 112 232-355 41-162 (266)
320 cd00946 FBP_aldolase_IIA Class 48.8 1.7E+02 0.0036 29.6 10.3 123 211-336 115-277 (345)
321 cd07941 DRE_TIM_LeuA3 Desulfob 48.2 2.5E+02 0.0054 27.1 11.3 50 258-307 148-198 (273)
322 TIGR01163 rpe ribulose-phospha 48.2 2.1E+02 0.0046 25.8 10.4 115 208-333 68-192 (210)
323 PRK10060 RNase II stability mo 47.8 1.7E+02 0.0037 32.1 11.3 124 251-381 498-633 (663)
324 COG0656 ARA1 Aldo/keto reducta 47.6 2.8E+02 0.0061 27.1 13.0 148 206-364 28-193 (280)
325 PRK11858 aksA trans-homoaconit 47.3 3.2E+02 0.007 27.8 18.8 157 204-370 24-204 (378)
326 PRK07094 biotin synthase; Prov 47.0 2.5E+02 0.0054 27.6 11.4 21 340-360 164-184 (323)
327 PLN02389 biotin synthase 46.9 3.3E+02 0.0072 27.8 13.4 144 203-354 116-296 (379)
328 COG0269 SgbH 3-hexulose-6-phos 45.8 2.5E+02 0.0054 26.4 10.2 112 213-335 74-193 (217)
329 PLN02951 Molybderin biosynthes 45.6 3.4E+02 0.0074 27.6 12.3 137 203-358 90-232 (373)
330 TIGR00612 ispG_gcpE 1-hydroxy- 45.5 3.3E+02 0.0072 27.4 15.1 155 203-377 31-189 (346)
331 PRK09389 (R)-citramalate synth 45.4 3.2E+02 0.0069 29.0 12.4 123 253-379 12-152 (488)
332 PRK07455 keto-hydroxyglutarate 45.1 2E+02 0.0042 26.2 9.5 92 259-362 22-113 (187)
333 COG1453 Predicted oxidoreducta 45.0 3.6E+02 0.0077 27.6 13.5 158 204-363 32-205 (391)
334 TIGR01235 pyruv_carbox pyruvat 45.0 6E+02 0.013 30.1 19.4 162 205-371 552-749 (1143)
335 cd02811 IDI-2_FMN Isopentenyl- 44.1 3.4E+02 0.0073 27.0 15.7 93 236-333 101-208 (326)
336 cd00408 DHDPS-like Dihydrodipi 43.7 3E+02 0.0065 26.3 17.4 148 204-360 16-182 (281)
337 PRK05567 inosine 5'-monophosph 43.6 4.2E+02 0.0091 28.0 14.3 117 209-335 230-361 (486)
338 TIGR02660 nifV_homocitr homoci 43.4 3.6E+02 0.0079 27.2 17.6 160 204-371 21-202 (365)
339 PLN02925 4-hydroxy-3-methylbut 43.2 1.8E+02 0.0038 32.2 10.0 59 302-363 151-232 (733)
340 COG0821 gcpE 1-hydroxy-2-methy 42.2 3.7E+02 0.0081 27.0 15.4 155 204-378 34-192 (361)
341 TIGR01496 DHPS dihydropteroate 42.0 1.6E+02 0.0034 28.3 8.8 93 258-359 20-123 (257)
342 TIGR01520 FruBisAldo_II_A fruc 41.9 2.9E+02 0.0063 28.0 10.7 115 220-337 136-290 (357)
343 PRK06256 biotin synthase; Vali 41.8 2.4E+02 0.0052 27.9 10.4 23 340-362 186-208 (336)
344 cd04727 pdxS PdxS is a subunit 41.8 1.5E+02 0.0032 29.1 8.3 105 201-333 118-224 (283)
345 cd04728 ThiG Thiazole synthase 41.8 3.3E+02 0.007 26.2 16.3 120 199-333 69-203 (248)
346 COG3589 Uncharacterized conser 41.7 1.8E+02 0.0038 29.3 9.0 138 207-358 17-174 (360)
347 cd07940 DRE_TIM_IPMS 2-isoprop 41.6 3.2E+02 0.007 26.1 18.6 163 204-370 18-205 (268)
348 KOG3857 Alcohol dehydrogenase, 40.9 2.2E+02 0.0047 28.9 9.4 116 305-423 73-193 (465)
349 PTZ00413 lipoate synthase; Pro 40.4 4.3E+02 0.0093 27.2 13.4 159 202-363 176-371 (398)
350 cd00958 DhnA Class I fructose- 40.2 3.1E+02 0.0067 25.5 13.1 118 204-328 74-209 (235)
351 PRK04180 pyridoxal biosynthesi 40.2 1.2E+02 0.0027 29.7 7.6 41 288-333 191-233 (293)
352 PRK09240 thiH thiamine biosynt 40.2 1.3E+02 0.0028 30.6 8.2 58 203-263 104-166 (371)
353 PRK07360 FO synthase subunit 2 40.1 89 0.0019 31.7 7.1 71 203-276 91-175 (371)
354 PRK09196 fructose-1,6-bisphosp 40.1 4.1E+02 0.0089 26.9 11.5 117 212-336 91-279 (347)
355 TIGR01290 nifB nitrogenase cof 40.0 1.4E+02 0.0031 31.1 8.7 66 203-268 60-131 (442)
356 cd04736 MDH_FMN Mandelate dehy 39.8 1.2E+02 0.0026 30.8 7.8 72 288-367 224-302 (361)
357 cd04729 NanE N-acetylmannosami 39.8 2E+02 0.0043 26.5 9.0 92 259-361 25-130 (219)
358 PRK04452 acetyl-CoA decarbonyl 39.6 4E+02 0.0087 26.6 11.5 124 203-338 75-213 (319)
359 PRK00366 ispG 4-hydroxy-3-meth 39.4 4.2E+02 0.0092 26.8 15.6 151 204-377 40-198 (360)
360 PRK07028 bifunctional hexulose 39.0 4.6E+02 0.0099 27.1 14.8 154 200-363 10-171 (430)
361 cd00453 FTBP_aldolase_II Fruct 38.9 3.3E+02 0.0071 27.5 10.5 124 210-336 101-274 (340)
362 TIGR00977 LeuA_rel 2-isopropyl 38.9 1.8E+02 0.0039 31.2 9.4 99 257-361 19-142 (526)
363 TIGR01692 HIBADH 3-hydroxyisob 38.7 2.6E+02 0.0057 26.9 10.0 76 248-335 83-158 (288)
364 PRK06256 biotin synthase; Vali 38.7 4E+02 0.0086 26.3 11.7 62 212-275 155-230 (336)
365 PRK07695 transcriptional regul 38.4 3.1E+02 0.0066 24.9 12.3 115 204-333 39-176 (201)
366 cd07938 DRE_TIM_HMGL 3-hydroxy 38.1 3.8E+02 0.0082 25.9 10.9 53 257-309 145-198 (274)
367 cd06557 KPHMT-like Ketopantoat 38.1 3.7E+02 0.0081 25.8 10.6 72 231-309 57-132 (254)
368 TIGR03700 mena_SCO4494 putativ 37.8 94 0.002 31.2 6.8 65 204-268 80-157 (351)
369 TIGR00423 radical SAM domain p 37.6 1.2E+02 0.0025 29.9 7.4 49 203-251 36-88 (309)
370 TIGR03551 F420_cofH 7,8-dideme 37.5 1.6E+02 0.0034 29.5 8.4 50 203-252 70-123 (343)
371 PLN02979 glycolate oxidase 37.2 4.7E+02 0.01 26.7 15.8 76 286-367 209-291 (366)
372 COG0134 TrpC Indole-3-glycerol 37.1 1.3E+02 0.0028 29.0 7.2 94 258-360 66-162 (254)
373 cd01948 EAL EAL domain. This d 36.8 2.4E+02 0.0052 25.7 9.0 62 302-365 143-212 (240)
374 TIGR03849 arch_ComA phosphosul 36.8 43 0.00092 31.9 3.8 47 315-362 10-62 (237)
375 PRK12290 thiE thiamine-phospha 36.0 5.3E+02 0.011 27.0 13.0 135 210-365 221-376 (437)
376 PF11590 DNAPolymera_Pol: DNA 35.7 37 0.00079 22.9 2.2 35 211-245 3-37 (41)
377 PF00701 DHDPS: Dihydrodipicol 35.4 4.2E+02 0.009 25.5 14.3 148 204-360 20-186 (289)
378 KOG0053 Cystathionine beta-lya 35.3 73 0.0016 32.8 5.4 70 261-337 150-223 (409)
379 TIGR00736 nifR3_rel_arch TIM-b 35.0 2.7E+02 0.006 26.3 9.0 59 208-268 150-211 (231)
380 PRK08444 hypothetical protein; 34.9 1.9E+02 0.004 29.3 8.4 48 204-251 81-132 (353)
381 PRK05481 lipoyl synthase; Prov 34.9 4.4E+02 0.0095 25.7 15.1 158 203-363 80-272 (289)
382 PRK05443 polyphosphate kinase; 34.8 1E+02 0.0022 34.3 6.8 76 201-277 346-425 (691)
383 COG0502 BioB Biotin synthase a 34.7 4.9E+02 0.011 26.2 12.8 149 203-353 84-260 (335)
384 PF01408 GFO_IDH_MocA: Oxidore 34.5 1.8E+02 0.004 23.4 7.0 105 235-360 13-119 (120)
385 PRK03170 dihydrodipicolinate s 34.1 4.4E+02 0.0095 25.5 12.4 136 204-347 20-174 (292)
386 PF02310 B12-binding: B12 bind 34.0 1.9E+02 0.004 23.5 7.0 72 291-363 16-90 (121)
387 cd00423 Pterin_binding Pterin 34.0 2.9E+02 0.0063 26.4 9.2 68 290-363 62-129 (258)
388 cd00946 FBP_aldolase_IIA Class 33.7 1.4E+02 0.003 30.1 7.1 56 302-358 85-158 (345)
389 PF00478 IMPDH: IMP dehydrogen 33.7 5.2E+02 0.011 26.2 12.6 141 193-339 96-245 (352)
390 COG5016 Pyruvate/oxaloacetate 33.6 5.6E+02 0.012 26.6 13.6 69 209-277 101-172 (472)
391 TIGR02090 LEU1_arch isopropylm 33.4 5.2E+02 0.011 26.1 16.8 158 204-370 20-200 (363)
392 cd02940 DHPD_FMN Dihydropyrimi 33.2 4.7E+02 0.01 25.5 16.1 93 238-332 90-198 (299)
393 PTZ00170 D-ribulose-5-phosphat 33.2 4.1E+02 0.0089 24.9 13.6 130 199-339 12-153 (228)
394 PRK13399 fructose-1,6-bisphosp 33.2 5.3E+02 0.011 26.1 12.1 116 212-335 91-278 (347)
395 PLN02460 indole-3-glycerol-pho 33.1 2.2E+02 0.0047 28.7 8.3 95 258-360 139-236 (338)
396 TIGR02313 HpaI-NOT-DapA 2,4-di 32.7 4.7E+02 0.01 25.4 16.0 149 204-360 19-187 (294)
397 PRK00208 thiG thiazole synthas 32.6 4.6E+02 0.0099 25.2 15.9 121 199-334 69-204 (250)
398 PRK04147 N-acetylneuraminate l 32.6 4.7E+02 0.01 25.3 14.8 136 204-347 22-177 (293)
399 PRK02048 4-hydroxy-3-methylbut 32.4 2.6E+02 0.0056 30.4 9.1 59 302-363 82-163 (611)
400 PRK00694 4-hydroxy-3-methylbut 31.8 3.1E+02 0.0067 29.7 9.4 59 302-363 86-167 (606)
401 COG0119 LeuA Isopropylmalate/h 31.7 4E+02 0.0086 27.6 10.2 97 256-359 19-135 (409)
402 COG2108 Uncharacterized conser 31.4 4.9E+02 0.011 26.1 10.2 125 233-361 122-250 (353)
403 PRK13307 bifunctional formalde 31.3 3.2E+02 0.0069 28.1 9.4 105 246-359 173-281 (391)
404 cd00739 DHPS DHPS subgroup of 31.1 4.4E+02 0.0095 25.3 9.9 56 300-361 72-127 (257)
405 COG0855 Ppk Polyphosphate kina 31.0 1.1E+02 0.0025 33.2 6.2 76 201-277 350-429 (696)
406 PRK08318 dihydropyrimidine deh 31.0 6E+02 0.013 26.1 15.2 95 236-332 88-198 (420)
407 PLN02858 fructose-bisphosphate 30.8 3.5E+02 0.0076 32.7 10.9 118 212-335 1185-1332(1378)
408 PRK13586 1-(5-phosphoribosyl)- 30.8 4.6E+02 0.01 24.7 11.7 119 195-325 75-210 (232)
409 TIGR00433 bioB biotin syntheta 30.6 4.9E+02 0.011 24.9 11.2 22 340-361 157-178 (296)
410 cd07945 DRE_TIM_CMS Leptospira 30.5 4.5E+02 0.0098 25.5 10.0 38 235-272 150-187 (280)
411 PRK08444 hypothetical protein; 30.2 3.5E+02 0.0075 27.4 9.4 28 335-362 183-210 (353)
412 PRK11613 folP dihydropteroate 30.0 1.7E+02 0.0037 28.6 6.9 62 203-268 35-108 (282)
413 COG0667 Tas Predicted oxidored 30.0 1.3E+02 0.0028 29.9 6.2 82 279-366 127-211 (316)
414 PRK07428 nicotinate-nucleotide 29.9 2.2E+02 0.0048 28.0 7.7 47 312-361 202-250 (288)
415 cd04732 HisA HisA. Phosphorib 29.9 2.7E+02 0.0059 25.7 8.2 61 288-355 61-121 (234)
416 TIGR00381 cdhD CO dehydrogenas 29.7 6.3E+02 0.014 25.9 14.7 106 234-348 176-292 (389)
417 COG2896 MoaA Molybdenum cofact 29.5 3.5E+02 0.0076 27.0 9.0 34 248-281 154-187 (322)
418 PLN02493 probable peroxisomal 29.5 6.2E+02 0.013 25.8 14.6 75 287-367 211-292 (367)
419 COG0191 Fba Fructose/tagatose 29.2 5.2E+02 0.011 25.4 9.9 114 212-335 91-235 (286)
420 PF00563 EAL: EAL domain; Int 29.2 62 0.0013 29.6 3.6 72 303-380 146-224 (236)
421 TIGR03705 poly_P_kin polyphosp 28.7 1.3E+02 0.0028 33.2 6.4 76 201-277 337-416 (672)
422 PRK09261 phospho-2-dehydro-3-d 28.5 3.7E+02 0.0081 27.2 9.1 123 249-381 55-207 (349)
423 PRK10376 putative oxidoreducta 28.5 5.4E+02 0.012 24.8 13.5 70 289-364 147-216 (290)
424 PRK13802 bifunctional indole-3 28.4 3.8E+02 0.0082 29.8 9.9 78 279-361 90-167 (695)
425 TIGR02666 moaA molybdenum cofa 28.4 3.4E+02 0.0074 26.8 9.0 52 231-282 138-190 (334)
426 cd08183 Fe-ADH2 Iron-containin 28.3 3.2E+02 0.007 27.5 8.9 115 304-424 24-140 (374)
427 PRK09197 fructose-bisphosphate 28.2 5.5E+02 0.012 26.0 10.2 119 215-336 124-281 (350)
428 PF04551 GcpE: GcpE protein; 28.2 4.6E+02 0.01 26.6 9.6 71 200-274 25-99 (359)
429 PRK12755 phospho-2-dehydro-3-d 27.8 6.5E+02 0.014 25.5 10.6 118 252-380 59-207 (353)
430 PRK00311 panB 3-methyl-2-oxobu 27.8 3.6E+02 0.0078 26.1 8.6 72 231-309 60-135 (264)
431 KOG4141 DNA repair and recombi 27.6 91 0.002 29.0 4.2 44 61-112 82-129 (222)
432 cd07938 DRE_TIM_HMGL 3-hydroxy 27.6 5.3E+02 0.012 24.9 9.9 55 204-258 147-204 (274)
433 COG2870 RfaE ADP-heptose synth 27.6 2.4E+02 0.0052 29.2 7.5 33 327-360 143-177 (467)
434 cd00331 IGPS Indole-3-glycerol 27.5 4.8E+02 0.01 23.8 10.5 94 262-360 32-127 (217)
435 PRK05692 hydroxymethylglutaryl 27.1 4.9E+02 0.011 25.4 9.6 38 235-272 158-195 (287)
436 TIGR00433 bioB biotin syntheta 26.9 5.7E+02 0.012 24.5 11.7 68 203-275 62-134 (296)
437 cd01310 TatD_DNAse TatD like p 26.9 4.5E+02 0.0097 24.1 9.1 18 345-362 134-153 (251)
438 TIGR01305 GMP_reduct_1 guanosi 26.8 6.7E+02 0.015 25.3 14.4 122 209-334 109-241 (343)
439 KOG2368 Hydroxymethylglutaryl- 26.7 4.7E+02 0.01 24.9 8.7 37 340-376 133-175 (316)
440 KOG0780 Signal recognition par 26.4 3.1E+02 0.0067 28.3 8.0 74 193-266 156-236 (483)
441 PLN03228 methylthioalkylmalate 26.4 6.7E+02 0.015 26.7 11.0 124 254-379 99-248 (503)
442 PTZ00170 D-ribulose-5-phosphat 26.3 5.4E+02 0.012 24.0 11.3 60 203-267 75-134 (228)
443 TIGR03700 mena_SCO4494 putativ 26.2 4.8E+02 0.01 26.1 9.7 24 340-363 187-210 (351)
444 PRK08445 hypothetical protein; 26.0 2.4E+02 0.0052 28.4 7.4 69 204-275 74-155 (348)
445 cd02809 alpha_hydroxyacid_oxid 26.0 6.2E+02 0.013 24.6 14.7 120 204-333 127-255 (299)
446 KOG0259 Tyrosine aminotransfer 25.9 1E+02 0.0022 31.5 4.6 46 314-359 187-237 (447)
447 PRK00164 moaA molybdenum cofac 25.8 6.4E+02 0.014 24.7 11.9 69 203-275 49-119 (331)
448 PF10007 DUF2250: Uncharacteri 25.7 37 0.00081 27.4 1.2 44 232-275 7-50 (92)
449 PRK09427 bifunctional indole-3 25.6 2E+02 0.0043 30.2 6.8 79 278-361 88-166 (454)
450 PF13317 DUF4088: Protein of u 25.5 61 0.0013 29.7 2.6 40 255-300 185-224 (229)
451 TIGR03699 mena_SCO4550 menaqui 25.5 2.8E+02 0.0062 27.5 7.9 48 203-250 72-123 (340)
452 COG5016 Pyruvate/oxaloacetate 25.4 7.8E+02 0.017 25.6 12.9 163 204-371 26-216 (472)
453 PF02142 MGS: MGS-like domain 25.4 1.5E+02 0.0034 23.4 4.8 83 263-358 2-94 (95)
454 PF05690 ThiG: Thiazole biosyn 25.2 6.1E+02 0.013 24.3 11.7 127 198-335 68-205 (247)
455 KOG2964 Arginase family protei 25.1 2.9E+02 0.0062 27.4 7.2 62 235-297 265-344 (361)
456 PRK11197 lldD L-lactate dehydr 24.9 5.4E+02 0.012 26.3 9.7 72 288-367 233-313 (381)
457 TIGR03551 F420_cofH 7,8-dideme 24.9 5.3E+02 0.012 25.6 9.7 24 338-361 176-199 (343)
458 PRK12822 phospho-2-dehydro-3-d 24.8 7.4E+02 0.016 25.1 11.6 116 256-381 62-207 (356)
459 PRK13398 3-deoxy-7-phosphohept 24.7 6.4E+02 0.014 24.3 13.6 144 201-359 36-201 (266)
460 PRK12595 bifunctional 3-deoxy- 24.5 7.5E+02 0.016 25.0 13.0 143 203-360 129-293 (360)
461 PRK02714 O-succinylbenzoate sy 23.9 38 0.00083 33.6 1.2 36 34-69 2-37 (320)
462 PRK08005 epimerase; Validated 23.8 6E+02 0.013 23.7 12.7 159 199-376 6-181 (210)
463 PRK11596 cyclic-di-GMP phospho 23.8 5.7E+02 0.012 23.9 9.3 81 289-381 143-231 (255)
464 PRK13361 molybdenum cofactor b 23.7 4.5E+02 0.0098 25.9 8.9 74 211-285 106-193 (329)
465 TIGR02351 thiH thiazole biosyn 23.6 2.9E+02 0.0063 27.9 7.6 57 204-263 104-165 (366)
466 PF01070 FMN_dh: FMN-dependent 23.3 3.4E+02 0.0074 27.4 7.9 75 287-367 212-293 (356)
467 TIGR01761 thiaz-red thiazoliny 23.2 1.1E+02 0.0024 30.8 4.3 72 246-326 63-137 (343)
468 COG1619 LdcA Uncharacterized p 23.1 2.5E+02 0.0054 27.9 6.7 61 205-268 25-95 (313)
469 TIGR02134 transald_staph trans 22.7 4.1E+02 0.009 25.3 7.8 131 195-335 60-200 (236)
470 PF09872 DUF2099: Uncharacteri 22.6 4.3E+02 0.0093 25.4 7.7 58 211-270 154-212 (258)
471 cd07941 DRE_TIM_LeuA3 Desulfob 22.5 6.9E+02 0.015 24.0 17.6 163 204-370 18-211 (273)
472 TIGR02666 moaA molybdenum cofa 22.5 6.1E+02 0.013 25.0 9.6 68 203-275 43-113 (334)
473 PRK14863 bifunctional regulato 22.4 3.1E+02 0.0066 26.7 7.3 73 289-366 124-197 (292)
474 cd06533 Glyco_transf_WecG_TagA 22.2 5.5E+02 0.012 22.7 10.0 80 205-286 32-111 (171)
475 cd02808 GltS_FMN Glutamate syn 22.0 6.7E+02 0.014 25.6 9.9 68 300-367 209-298 (392)
476 cd08190 HOT Hydroxyacid-oxoaci 22.0 7.5E+02 0.016 25.4 10.3 58 304-361 25-87 (414)
477 PRK07360 FO synthase subunit 2 21.6 6.4E+02 0.014 25.5 9.6 29 335-363 195-223 (371)
478 KOG2550 IMP dehydrogenase/GMP 21.6 9.3E+02 0.02 25.1 12.2 131 192-327 238-377 (503)
479 TIGR01768 GGGP-family geranylg 21.5 5.9E+02 0.013 24.0 8.5 68 258-333 132-207 (223)
480 PRK12344 putative alpha-isopro 21.5 1E+03 0.022 25.5 16.6 162 204-371 25-218 (524)
481 TIGR03471 HpnJ hopanoid biosyn 21.5 5.7E+02 0.012 26.7 9.5 135 204-358 228-370 (472)
482 cd08194 Fe-ADH6 Iron-containin 21.5 6.5E+02 0.014 25.4 9.6 110 304-423 25-140 (375)
483 PRK15454 ethanol dehydrogenase 21.5 6.7E+02 0.014 25.6 9.8 111 305-424 52-167 (395)
484 PF00128 Alpha-amylase: Alpha 21.2 1.5E+02 0.0033 28.1 4.8 32 328-360 39-71 (316)
485 PRK05772 translation initiatio 20.9 8.9E+02 0.019 24.6 10.9 121 232-361 147-287 (363)
486 PRK09912 L-glyceraldehyde 3-ph 20.8 1.9E+02 0.0042 28.8 5.6 59 308-366 164-228 (346)
487 COG2403 Predicted GTPase [Gene 20.7 2.4E+02 0.0051 29.0 5.9 60 302-364 60-119 (449)
488 TIGR02638 lactal_redase lactal 20.6 5.2E+02 0.011 26.1 8.8 57 304-360 31-92 (379)
489 KOG0634 Aromatic amino acid am 20.5 2.2E+02 0.0048 29.6 5.8 90 266-361 140-244 (472)
490 PRK15029 arginine decarboxylas 20.4 7.6E+02 0.016 27.8 10.4 136 202-363 200-350 (755)
491 PRK08091 ribulose-phosphate 3- 20.3 7.4E+02 0.016 23.4 12.8 167 194-377 13-198 (228)
492 TIGR03699 mena_SCO4550 menaqui 20.3 4.5E+02 0.0098 26.0 8.1 25 339-363 179-203 (340)
493 PF02581 TMP-TENI: Thiamine mo 20.1 3.1E+02 0.0068 24.4 6.3 45 318-363 17-65 (180)
494 cd01229 PH_etc2 Epithelial cel 20.1 66 0.0014 27.2 1.6 46 14-71 30-75 (129)
495 cd00019 AP2Ec AP endonuclease 20.0 6.2E+02 0.013 24.0 8.8 22 341-362 123-144 (279)
No 1
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.3e-68 Score=540.09 Aligned_cols=353 Identities=24% Similarity=0.356 Sum_probs=318.4
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHH-HHHHHH-HHhhHhcCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTK-ALVKVR-EACQFLRQSPP 141 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~-~~~~~~-~~~~~l~g~~~ 141 (427)
+|++++++.+++|++.|+.++.++.+.++.++|||+|++|.+|||||.+.+ .++++..+ ....++ .+.|.+.|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 589999999999999999999999999999999999999999999998764 35443332 233444 47899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC-
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG- 219 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G- 219 (427)
.+++.+|+.|++...+. +++++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999999987754443 458999999999999999999999999997 78999999988778888888888889999
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|++||+|+|. ++++|+++++++|+. ++++.|++|||++|++++|++++++|+++++. |||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcc--eeeCCCCcccHHHHHHHHh
Confidence 9999999996 788999999999995 67999999999999999999999999999974 9999999999999999986
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+|++++++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++..+ .|+++++.+.++++..++.++||++.+|++||||+++|++.|
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 363 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKV 363 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHh
Confidence 99998666 577766666677777888999999999999999999999976
No 2
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=1.3e-68 Score=540.31 Aligned_cols=352 Identities=21% Similarity=0.336 Sum_probs=314.9
Q ss_pred EEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHH-HHHHH-HHhhHhcCCCCC
Q 014285 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVR-EACQFLRQSPPT 142 (427)
Q Consensus 67 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~-~~~~~l~g~~~~ 142 (427)
|++++++++++|++.|++++.++.+.++.++|||+|++|++||||+.+. |.++++..+. ...++ .++|.|.|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 6899999999999999999999999999999999999999999999875 4455533332 33344 589999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHh-hcCC
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC-KLGF 220 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~-~~Gf 220 (427)
+++.+|+.+.+.+.+. +.+++|||+||||+.||..|+|||+||||. ++++|+|++++..+++++.++++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999999887654333 357999999999999999999999999997 88999999888777776666666655 5899
Q ss_pred cEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 221 STLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 221 ~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
++||+|+|. ++++|+++++++|+ .++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 999999986 78999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++..+ .|+++++.+.++++.+++.++||++.+|++||||+++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~ 362 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKV 362 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHH
Confidence 9998766 467677666677888888999999999999999999999875
No 3
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.4e-65 Score=515.97 Aligned_cols=344 Identities=22% Similarity=0.371 Sum_probs=304.2
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCCCCCCHH
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSPPTTLN 145 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~~~~~~~ 145 (427)
++++.+++|+++|+.++.++.+.++.++|||+|++|++||||+.+. |.++++..+ ....+++ +.|.|+|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 4678999999999999999999999999999999999999999865 556554333 2333443 78999999999999
Q ss_pred HHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCH-HHHHHHHHHHhhcCCcEEE
Q 014285 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSP-AEASELASKYCKLGFSTLK 224 (427)
Q Consensus 146 ~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~-~~~~~~~~~~~~~Gf~~iK 224 (427)
.+|+.+.+ +.+. +++++||||||||++||.+|+|+|+||||.++++|+|++++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99999876 3443 568999999999999999999999999998899999999877765 8889999999999999999
Q ss_pred EeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 225 LNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 225 lKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
+|+|. +.|++++++||+..+++.|++|||++|++++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 99974 689999999999756999999999999999985 8999999987 49999999999999999986 789
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~ 383 (427)
+||++||++.+.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.++++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566655
Q ss_pred ee-ccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 384 YV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 384 ~~-e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+. +++.. ..+.++++.+++.++||++.+|++||||+++|++.|
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l 352 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREAL 352 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHh
Confidence 43 44432 235567777788999999999999999999999976
No 4
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.6e-65 Score=518.12 Aligned_cols=345 Identities=17% Similarity=0.219 Sum_probs=298.8
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC-CCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP-TTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~-~~~ 144 (427)
||++++++++++|+++|++++.++...++.++|||+||+|++||||+... .+ ....+..+++.++|.++ .+.
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~---~~~~~~~~~~~llg~~~~~~~ 73 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AE---ALEALLEAARSLVGGDVFGAY 73 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HH---HHHHHHHHhHHHhCCCcchhh
Confidence 69999999999999999999887777789999999999999999997531 11 22234567888888877 577
Q ss_pred HHHHHHHHHHCC----C---------ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec---------
Q 014285 145 NFALDEIARILP----G---------SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--------- 201 (427)
Q Consensus 145 ~~~~~~l~~~~~----g---------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--------- 201 (427)
+.+|+.|++... | ...+++++||||||||++||.+|+|||+||||. ++++|+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~~ 153 (395)
T cd03323 74 LAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKTD 153 (395)
T ss_pred HHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeecccccccc
Confidence 889999976531 1 134678999999999999999999999999996 88999998642
Q ss_pred ------------CCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 202 ------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 202 ------------~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
..+++++.++++++++ +||++||+|+|. ++++|+++++++|+..|++.||||||++|++++|++++
T Consensus 154 ~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~ 233 (395)
T cd03323 154 LPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLA 233 (395)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHH
Confidence 2478889889988875 699999999996 67899999999999778999999999999999999999
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHH
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~ 346 (427)
++|++ ++ .|||||++ |+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++++
T Consensus 234 ~~l~~-~l--~~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ki 304 (395)
T cd03323 234 KELEG-VL--AYLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRV 304 (395)
T ss_pred HhcCc-CC--CEEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHH
Confidence 99999 87 49999998 8999999986 78999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
+++|+++|+++++|++.|++|++++++|++++++|..+ .|...++...++++.+++.++||++.+|++||||+++|+++
T Consensus 305 a~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~~ 384 (395)
T cd03323 305 AQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRDK 384 (395)
T ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHHH
Confidence 99999999999999999999999999999999998765 23222322223445567889999999999999999999987
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
|
T Consensus 385 l 385 (395)
T cd03323 385 L 385 (395)
T ss_pred H
Confidence 5
No 5
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.3e-65 Score=511.20 Aligned_cols=338 Identities=22% Similarity=0.297 Sum_probs=294.2
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~~ 144 (427)
||++++++.+++|+++|+..+..++..+..++|+|+| +|++||||+. ++... ...+ +.+.|.|+|+++.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~--~~~i~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAA--AALVDGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHH--HHHHHHHHHHHhcCCCcccH
Confidence 6899999999999999997666666778899999998 7999999863 22111 1123 357899999999999
Q ss_pred HHHHHHHHHHC--C--CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--CCHHHHHHHHHHHhhc
Q 014285 145 NFALDEIARIL--P--GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKYCKL 218 (427)
Q Consensus 145 ~~~~~~l~~~~--~--g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~~~~ 218 (427)
+.+|+.|++.. . +....++++||||||||++||.+|+|||+||||.++++|+|++++. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 99999997742 1 1223468999999999999999999999999998899999988653 3678899999999999
Q ss_pred CCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 219 GFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 219 Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
||+++|+|+|.+.++|+++++++|+ .++++.|+||||++|++++|+++++.|+++++ .|+|||++++|+++|++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 9999999999888999999999999 57899999999999999999999999999997 49999999999999999986
Q ss_pred hhccc--cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHH
Q 014285 298 FARDT--YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (427)
Q Consensus 298 ~~r~~--~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (427)
+ +++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7799999999999999999999999999999999997 99999999999999999999974 357899
Q ss_pred HHhhcCCcceeccCCC-cccccCCCCCceeeeCcEEecCC-CCCcccccCC
Q 014285 375 LAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKW 423 (427)
Q Consensus 375 laaal~~~~~~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~-~pGlGve~d~ 423 (427)
++++++|..+.|+..+ ..+.++++.+++.++||++.+|+ +||||+++|+
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~ 351 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRA 351 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCC
Confidence 9999999877775432 23334566677888999999987 7999999997
No 6
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6.2e-65 Score=511.13 Aligned_cols=343 Identities=20% Similarity=0.250 Sum_probs=298.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~~ 143 (427)
|+|++++++++++|+++|+.++.++.+..+.++|||+|++|++||||+.. ++++..+ ....++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 68999999999999999999999999999999999999999999999643 2333322 22234568899999975 5
Q ss_pred HHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 144 LNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 144 ~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
.+.+++.+.+.. .+ .....+++||||||||++||.+|+|||+||||.++++|+|++++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 666776665432 12 22357899999999999999999999999999988999999988888899999999999999
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|++||+|+|. ++++|++++++||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 9999999986 68899999999999 47999999999999999999999999999987 49999999999999999986
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. + +++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~--~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ--E----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH--H----HHHHHH
Confidence 78999999999999999999999999999999999997 999999999999999999999842 2 468999
Q ss_pred hhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++..++|+. .+..+++.+++.++||++.+|++||||+++|+++|
T Consensus 305 aa~~~~~~~e~~---~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 351 (355)
T cd03321 305 AVTPTAHWLEYV---DWAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAV 351 (355)
T ss_pred HhCCCcceeecc---chHHHHhcCCcEEECCEEECCCCCcCCcccCHHHH
Confidence 999987776632 12234455678899999999999999999999876
No 7
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=1.5e-63 Score=508.45 Aligned_cols=338 Identities=15% Similarity=0.186 Sum_probs=289.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~ 143 (427)
|||++|+++.+ . ..++.++|||+|++|++||||+.+. ++.......+ +.++|.|+|+++.+
T Consensus 1 mkI~~v~~~~~-~-------------~~~~~vlVri~td~G~~G~GE~~~~----~~~~~~~~~~~~~l~p~l~G~d~~~ 62 (404)
T PRK15072 1 MKIVDAEVIVT-C-------------PGRNFVTLKITTDDGVTGLGDATLN----GRELAVASYLQDHVCPLLIGRDAHR 62 (404)
T ss_pred CeeEEEEEEEE-C-------------CCCcEEEEEEEeCCCCeEEEecccC----CchHHHHHHHHHHHHHHcCCCChhH
Confidence 79999999643 1 1134689999999999999998532 1112222233 45899999999999
Q ss_pred HHHHHHHHHHHC---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 144 LNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 144 ~~~~~~~l~~~~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
++.+|+.|.+.. .|...+.+++||||||||++||.+|+|||+||||. ++++|+|.+....+++++.+++++++++|
T Consensus 63 ~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~G 142 (404)
T PRK15072 63 IEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLELG 142 (404)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 999999997631 23234568999999999999999999999999996 78999997655567888888999999999
Q ss_pred CcEEEEeccCC-----------------------------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 220 FSTLKLNVGRN-----------------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 220 f~~iKlKiG~~-----------------------------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
|++||+|+|.+ ++.|+++|++||+ .+|++.|++|||++||+++|
T Consensus 143 f~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A 222 (404)
T PRK15072 143 YKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEA 222 (404)
T ss_pred CCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHHH
Confidence 99999999731 1345789999999 57999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~ 342 (427)
++++++|+++++ .|||||++++|+++|++|++ .+++||++||++.+..+++++++.+++|++|+|++++| +++
T Consensus 223 ~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~ 296 (404)
T PRK15072 223 ARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITH 296 (404)
T ss_pred HHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHH
Confidence 999999999997 49999999999999999986 78999999999999999999999999999999999997 999
Q ss_pred HHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCccccc
Q 014285 343 TLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~ 421 (427)
+++++++|+++|+++++|++. +|+++.++++|++++++|+.+.|++.+....++++..++.++||++.+|++||||+++
T Consensus 297 ~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~~ 376 (404)
T PRK15072 297 LRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVDF 376 (404)
T ss_pred HHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCeeE
Confidence 999999999999999999765 7999999999999999998777766543334566767888999999999999999999
Q ss_pred CCCcC
Q 014285 422 KWTIV 426 (427)
Q Consensus 422 d~~~v 426 (427)
|+++|
T Consensus 377 d~~~l 381 (404)
T PRK15072 377 DEKLA 381 (404)
T ss_pred CHHHH
Confidence 99875
No 8
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.5e-63 Score=503.37 Aligned_cols=342 Identities=17% Similarity=0.236 Sum_probs=295.2
Q ss_pred eEEEEEEEEEEeeccccccc----cceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSL----GLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~----a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~ 141 (427)
||++++++.+++|+++|+.+ +.++.+.++.++|||+|++|++||||+.+. . .......+.+.|.|+|+++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~----~~~~~~~~~l~p~liG~d~ 74 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V----TDPALVDRFLKKVLIGQDP 74 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h----hHHHHHHHHHHHhcCCCCh
Confidence 58999999999999998766 577888899999999999999999996431 1 1111123458899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC-------CCHHHHHHHHHH
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-------VSPAEASELASK 214 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-------~~~~~~~~~~~~ 214 (427)
.+++++|+.|.+...+. ..++++||||||||+.||.+|+|||+||||.++++|+|++++. .+++++.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~-~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~~ 153 (368)
T cd03329 75 LDRERLWQDLWRLQRGL-TDRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEE 153 (368)
T ss_pred hHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHHH
Confidence 99999999998765553 2358999999999999999999999999998899999987632 378999999999
Q ss_pred HhhcCCcEEEEeccCC--chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 215 YCKLGFSTLKLNVGRN--ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG~~--~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
++++||+.||+|+|.+ +++|++++++||+ .|+++.|+||||++|++++|++++++|+++++. |+|||++++|+++
T Consensus 154 ~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~ 231 (368)
T cd03329 154 CKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFF--WYEDPLREASISS 231 (368)
T ss_pred HHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCC--eEeCCCCchhHHH
Confidence 9999999999999753 6889999999999 589999999999999999999999999999874 9999999999999
Q ss_pred HHHHHHhhccccCCeEEecCCCCC-HHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 292 LHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~-~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
+++|++ ++++||++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .
T Consensus 232 ~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------~ 301 (368)
T cd03329 232 YRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------G 301 (368)
T ss_pred HHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------H
Confidence 999986 78999999999999 999999999999999999999997 99999999999999999999984 4
Q ss_pred HHHHHHHhhcCCcceec--cCCCcccccCC-----CCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVN--LNTPFLLSEDP-----FVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e--~~~p~~~~~~~-----~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|++++++|..+.| ++.|.....++ ..+++..+||++.+|++|||||++|+++|
T Consensus 302 ~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 365 (368)
T cd03329 302 AANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYI 365 (368)
T ss_pred HHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHH
Confidence 68899999999988776 33443221111 12344568999999999999999999876
No 9
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.3e-63 Score=497.12 Aligned_cols=330 Identities=17% Similarity=0.269 Sum_probs=282.3
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~ 145 (427)
||++|+++.+. ++.++|+|+|++|++||||+.+.. +.+ .....++.+.|.|.|+++.+++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~--~~~~~~~~l~p~l~G~d~~~~~ 60 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KAR--TVEAAVQELEDYLIGKDPMNIE 60 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cch--HHHHHHHHHHHHhCCCCHHHHH
Confidence 57888886541 235899999999999999997521 111 1223345689999999999999
Q ss_pred HHHHHHHHH--CCC-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCc
Q 014285 146 FALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFS 221 (427)
Q Consensus 146 ~~~~~l~~~--~~g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~ 221 (427)
.+|+.|... ..+ ...+++++||||||||++||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 140 (352)
T cd03325 61 HHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFT 140 (352)
T ss_pred HHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 999999653 222 224568999999999999999999999999996 7899999988778899898899999999999
Q ss_pred EEEEeccC---------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 222 TLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 222 ~iKlKiG~---------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
+||+|+|. ++++|+++++++|+ .+|++.||||||++||+++|+++++.|+++++. |||||++++|+++
T Consensus 141 ~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d~~~ 218 (352)
T cd03325 141 AVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLL--FIEEPVLPENVEA 218 (352)
T ss_pred EEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCc--EEECCCCccCHHH
Confidence 99999984 46789999999999 579999999999999999999999999999974 9999999999999
Q ss_pred HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHH
Q 014285 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (427)
|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+++++
T Consensus 219 ~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~~ 293 (352)
T cd03325 219 LAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIALA 293 (352)
T ss_pred HHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHHH
Confidence 999986 78999999999999999999999999999999999997 99999999999999999999996 8999999
Q ss_pred HHHHHHhhcCCcceec--cCCCccccc----CCCC-CceeeeCcEEecCCCCCcccccC
Q 014285 371 FALHLAAGLGCIKYVN--LNTPFLLSE----DPFV-GGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 371 a~~hlaaal~~~~~~e--~~~p~~~~~----~~~~-~~~~~~~G~i~~p~~pGlGve~d 422 (427)
+++|+++++++..+.| ++.++...+ +.+. .+++++||++.+|++||||+++|
T Consensus 294 a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 294 ASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999998865543 222222111 1233 57889999999999999999987
No 10
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=3.1e-63 Score=503.28 Aligned_cols=335 Identities=19% Similarity=0.245 Sum_probs=284.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++++++.+. + ..++|||+|++|++||||+...+ + .......++.+.|.|+|+++.++
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~--~~~~~~~~~~~~p~l~G~d~~~~ 60 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--R--ARTVEAAVHELADYLIGKDPRRI 60 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--c--hHHHHHHHHHHHHHhCCCCHHHH
Confidence 799999997652 1 13889999999999999986421 1 11222234568999999999999
Q ss_pred HHHHHHHHHH--CCC-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 145 NFALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 145 ~~~~~~l~~~--~~g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
+.+|+.|+.. ..+ ...+++++|||||||||+||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 61 ~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf 140 (382)
T PRK14017 61 EDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERGF 140 (382)
T ss_pred HHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999653 222 223568999999999999999999999999996 889999988777789999999999999999
Q ss_pred cEEEEeccC---------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChh
Q 014285 221 STLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (427)
Q Consensus 221 ~~iKlKiG~---------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~ 290 (427)
+.||+|+|. ++++|+++++++|+ .+|++.|+||||++|+.++|++++++|+++++. |||||++++|++
T Consensus 141 ~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~~~d~~ 218 (382)
T PRK14017 141 TAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPM--FIEEPVLPENAE 218 (382)
T ss_pred CEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCC--eEECCCCcCCHH
Confidence 999999963 35789999999999 579999999999999999999999999999974 999999999999
Q ss_pred hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 291 ~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
+|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|++
T Consensus 219 ~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~~ 293 (382)
T PRK14017 219 ALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIAL 293 (382)
T ss_pred HHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHHH
Confidence 9999986 78999999999999999999999999999999999997 9999999999999999999999865 8999
Q ss_pred HHHHHHHhhcCCcceecc--CCCccccc---CCCC--CceeeeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVNL--NTPFLLSE---DPFV--GGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e~--~~p~~~~~---~~~~--~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|+++++++..+.+. +..+...+ +.+. .++.++||++.+|++|||||++|+++|
T Consensus 294 aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l 357 (382)
T PRK14017 294 AACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKV 357 (382)
T ss_pred HHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHH
Confidence 999999999988655442 12111111 1122 467889999999999999999999876
No 11
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=1.1e-62 Score=495.60 Aligned_cols=340 Identities=22% Similarity=0.340 Sum_probs=302.0
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~~ 144 (427)
||++++++.+++|++.| .++.+.++.++|||+|++|++||||+.+.+. . ......+++ ++|.|.|+++.++
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~--~~~~~~l~~~~~p~l~G~~~~~~ 72 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--P--SAVAAAIEDLLAPLLIGRDPLDI 72 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--c--hHHHHHHHHHHHHHccCCChHHH
Confidence 58999999999999998 5667788999999999999999999987542 1 122333454 8999999999999
Q ss_pred HHHHHHHHHHCCCC----hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCC--CHHHHHHHHHHHhh
Q 014285 145 NFALDEIARILPGS----EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAV--SPAEASELASKYCK 217 (427)
Q Consensus 145 ~~~~~~l~~~~~g~----~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~--~~~~~~~~~~~~~~ 217 (427)
+.+|+.|.+...++ ..+++++|||+||||+.||..|+|||+||||. ++++|+|.+++.. +++++.+.++++++
T Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~ 152 (357)
T cd03316 73 ERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAVA 152 (357)
T ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999998754322 34678999999999999999999999999998 8999999987655 68889999999999
Q ss_pred cCCcEEEEeccCC------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChh
Q 014285 218 LGFSTLKLNVGRN------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (427)
Q Consensus 218 ~Gf~~iKlKiG~~------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~ 290 (427)
+||+.||+|+|.+ ++.|++++++||+ .++++.|++|+|++|++++|+++++.|+++++ .|||||+++++++
T Consensus 153 ~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~ 230 (357)
T cd03316 153 EGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDLE 230 (357)
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCHH
Confidence 9999999999974 6899999999999 57899999999999999999999999999987 4999999999999
Q ss_pred hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 291 ~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
++++|++ ++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|+.
T Consensus 231 ~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~~ 305 (357)
T cd03316 231 GLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIGL 305 (357)
T ss_pred HHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHHH
Confidence 9999986 68999999999999999999999999999999999997 9999999999999999999999866 9999
Q ss_pred HHHHHHHhhcCCcceeccCCCc-ccccCCCCCceeeeCcEEecCCCCCcccc
Q 014285 370 GFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e~~~p~-~~~~~~~~~~~~~~~G~i~~p~~pGlGve 420 (427)
++++|+++++++..+.|++.+. ....+++..++.++||++.+|++||||+|
T Consensus 306 aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 306 AASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 9999999999998888876553 23445667788999999999999999986
No 12
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=3.5e-62 Score=494.08 Aligned_cols=334 Identities=21% Similarity=0.290 Sum_probs=284.1
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcC---C--ceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCC-
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSN---G--CVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPT- 142 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~---G--~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~- 142 (427)
++++.+++|+++||.++.++++.++.++|+|+||+ | ++||||+.. +. .... ..+ +.+.|.|+|++|.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~~----~~~~-~~i~~~~~p~LiG~dp~~ 76 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-GR----YAQG-GLLRERFIPRLLAAAPDS 76 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-Cc----hhHH-HHHHHHHHHHhcCCChHH
Confidence 35678889999999999999999999999999998 9 999999862 11 1111 113 3478999999998
Q ss_pred ---------CHHHHHHHHHHHC--CCC-hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC------CCceeeeeeec---
Q 014285 143 ---------TLNFALDEIARIL--PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA------SNSLSTAITIP--- 201 (427)
Q Consensus 143 ---------~~~~~~~~l~~~~--~g~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~------~~~ip~~~~i~--- 201 (427)
+++.+|+.|.... .+. ....+++||||||||++||.+|+|||+||||. ++++|+|.+.+
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~~ 156 (385)
T cd03326 77 LLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYY 156 (385)
T ss_pred hhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCCC
Confidence 4499999997631 122 23468999999999999999999999999985 47899998754
Q ss_pred -CCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 202 -AVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 202 -~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
..+++++.+++++++++||+.||+|+|. ++++|+++++++|+ ++|++.|+||||++||+++|+++++.|+++++ .
T Consensus 157 ~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~ 234 (385)
T cd03326 157 PGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL--R 234 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC--C
Confidence 3467888899999999999999999986 67899999999999 58999999999999999999999999999997 4
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC----cEEEeCCCCcc-HHHHHHHHHHHHHc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA----SVVNIKLAKFG-VLGTLQIIKATRKS 353 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~----~~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (427)
|||||++++|++++++|++ ++++||++||++++..+++++++.+++ |++|+|++++| ++++++++++|+++
T Consensus 235 ~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~ 310 (385)
T cd03326 235 WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAH 310 (385)
T ss_pred EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHc
Confidence 9999999999999999986 789999999999999999999999887 99999999997 99999999999999
Q ss_pred CCc---EEEcccCchhHHHHHHHHHHhhcCCcceec----cCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 354 GLH---LMIDGMIETRLATGFALHLAAGLGCIKYVN----LNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 354 gi~---~~~~s~~es~ig~~a~~hlaaal~~~~~~e----~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|++ +++|+ +..+++|+++++++. +++ ++.+. +.+.+++.++||++.+|++||||+|+|+++|
T Consensus 311 gi~~~~~~pH~------~~~a~lhl~aa~~~~-~~e~~~~~~~~~----~~~~~~~~~~~G~i~~p~~PGlGield~~~~ 379 (385)
T cd03326 311 GWSRRRFFPHG------GHLMSLHIAAGLGLG-GNESYPDVFQPF----GGFADGCKVENGYVRLPDAPGIGFEGKAELA 379 (385)
T ss_pred CCCCceeecch------HHHHHHHHHhcCCCc-eeEEeccccchh----hhcCCCCceeCCEEECCCCCCCCcccCHHHH
Confidence 998 77775 346788999988752 222 22222 2234567789999999999999999999875
No 13
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=8e-62 Score=489.32 Aligned_cols=330 Identities=15% Similarity=0.179 Sum_probs=281.7
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~~~ 144 (427)
||++|+.+.. .| . ++.++|||+|++|++||||+.+. +........++ .+.|.|+|+++.++
T Consensus 1 kI~~ie~~~~-~~----~---------~~~vlV~v~td~G~~G~GE~~~~----~~~~~~~~~i~~~l~p~l~G~d~~~~ 62 (361)
T cd03322 1 KITAIEVIVT-CP----G---------RNFVTLKITTDQGVTGLGDATLN----GRELAVKAYLREHLKPLLIGRDANRI 62 (361)
T ss_pred CeEEEEEEEE-CC----C---------CCEEEEEEEeCCCCeEEEecccC----CCHHHHHHHHHHHHHHHcCCCChhHH
Confidence 6889998544 22 1 34689999999999999998632 11112222343 48899999999999
Q ss_pred HHHHHHHHHH--CC-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 145 NFALDEIARI--LP-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 145 ~~~~~~l~~~--~~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
+.+|+.|+.. +. +....++++||||||||++||.+|+|||+||||. ++++|+|.+.+..+++++.+++++++++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~Gf 142 (361)
T cd03322 63 EDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGY 142 (361)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999763 11 2223468999999999999999999999999996 789999987666678888899999999999
Q ss_pred cEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 221 STLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 221 ~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
+.||+|+ +++++++|+ .++++.|++|||++|++++|++++++|+++++. |+|||++++|+++|++|++
T Consensus 143 ~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~~-- 211 (361)
T cd03322 143 RAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLF--WMEDPTPAENQEAFRLIRQ-- 211 (361)
T ss_pred CeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCC--EEECCCCcccHHHHHHHHh--
Confidence 9999998 789999999 578999999999999999999999999999974 9999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAA 377 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaa 377 (427)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|++++++++|+++
T Consensus 212 --~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa 289 (361)
T cd03322 212 --HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDL 289 (361)
T ss_pred --cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHh
Confidence 78999999999999999999999999999999999997 999999999999999999999887 69999999999999
Q ss_pred hcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++..+.++........+++..++.++||++.+|++||||+++|++++
T Consensus 290 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l 338 (361)
T cd03322 290 WVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAA 338 (361)
T ss_pred hcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHH
Confidence 9888665554321112235666778899999999999999999999875
No 14
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.3e-61 Score=484.36 Aligned_cols=309 Identities=17% Similarity=0.263 Sum_probs=266.5
Q ss_pred EEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--C--CChhhhHHHHHHH
Q 014285 95 NVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARIL--P--GSEFASVRAGVEM 169 (427)
Q Consensus 95 ~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~--g~~~~~a~~aie~ 169 (427)
.++|||+||+|++||||+.+. . .....+ +.+.|.|+|+++.+++.+|+.|++.. . +....++++||||
T Consensus 11 ~v~V~i~td~Gi~G~GE~~~~----~---~~~~~i~~~l~p~liG~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~ 83 (341)
T cd03327 11 WLFVEIETDDGTVGYANTTGG----P---VACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDL 83 (341)
T ss_pred EEEEEEEECCCCeEEecCCCc----h---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHH
Confidence 589999999999999998531 1 112223 45889999999999999999997642 1 1223468999999
Q ss_pred HHHHHHHhhCCCChhhhhCCC-CCceeeeeee-cCCCHHHHHHHHHHHhhcCCcEEEEeccC-------CchhhHHHHHH
Q 014285 170 ALIDAVANSIDIPLWRLFGGA-SNSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQA 240 (427)
Q Consensus 170 Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-------~~~~d~~~l~~ 240 (427)
||||++||.+|+|||+||||. ++++|+|++. +..+++++.+++++++++||++||+|+|. ++++|++++++
T Consensus 84 AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~a 163 (341)
T cd03327 84 ALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRA 163 (341)
T ss_pred HHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999996 7899999874 35688889999999999999999999973 35789999999
Q ss_pred HHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHH
Q 014285 241 IHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (427)
Q Consensus 241 ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~ 319 (427)
||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+..++
T Consensus 164 vr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pIa~gE~~~~~~~~ 237 (341)
T cd03327 164 IREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGF 237 (341)
T ss_pred HHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCHHHHHHHHh----cCCCCeEeccCccCHHHH
Confidence 999 58999999999999999999999999999997 49999999999999999986 799999999999999999
Q ss_pred HHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCC--Ccc----
Q 014285 320 QKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PFL---- 392 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~--p~~---- 392 (427)
+++++.+++|++|+|++++| ++++++++++|+++|+++++|+. .++++|++++++|..+.|+.. +..
T Consensus 238 ~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~ 311 (341)
T cd03327 238 KRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------QIYNYHFIMSEPNSPFAEYLPNSPDEVGNP 311 (341)
T ss_pred HHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------HHHHHHHHHhCcCceeEEecccccccccch
Confidence 99999999999999999997 99999999999999999999972 458899999999977766432 111
Q ss_pred cccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 393 ~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
+..+++.+++.++||++.+|++||||+|+|
T Consensus 312 ~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 312 LFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred hHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 124555667788999999999999999987
No 15
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.1e-61 Score=489.99 Aligned_cols=343 Identities=18% Similarity=0.241 Sum_probs=278.2
Q ss_pred eeEEEEEEEEEEeeccccccccce--eEEeeeEEEEEEEEcC-CceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN-GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~--~~~~~~~vlV~v~t~~-G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~ 141 (427)
+||++++++.+++|+++|+..+.+ +....+.++|||+||+ |++||||+.+... +.+. ....++.+.|.|+|+++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~-~~~~--~~~~~~~lap~liG~d~ 77 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIGR-GNEI--VCAAIEALAHLVVGRDL 77 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCCC-chHH--HHHHHHHHHHHhCCCCH
Confidence 589999999999999999865433 3344578999999999 9999999864211 1111 11223568999999999
Q ss_pred CCHHHHHHHHHHHCC--------C---ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-C------------------
Q 014285 142 TTLNFALDEIARILP--------G---SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-S------------------ 191 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~--------g---~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~------------------ 191 (427)
.+++.+++.+.+.+. + .....+++||||||||++||.+|+|||+||||. +
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~~ 157 (415)
T cd03324 78 ESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTP 157 (415)
T ss_pred HHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccCH
Confidence 988554444433221 1 122468999999999999999999999999993 2
Q ss_pred -----------------------Cceeeeeee-c--CCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-h
Q 014285 192 -----------------------NSLSTAITI-P--AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-V 244 (427)
Q Consensus 192 -----------------------~~ip~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~ 244 (427)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.++++|+++++++|+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~v 237 (415)
T cd03324 158 EEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVI 237 (415)
T ss_pred HHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 578888642 2 247788999999999999999999999989999999999999 5
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc---CCeEEecCCCCCHHHHHH
Q 014285 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY---GISVVADESCRSLNDVQK 321 (427)
Q Consensus 245 ~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~---~iPIa~dE~~~~~~~~~~ 321 (427)
+|++.|+||||++|++++|++++++|+++++ .|||||++++|+++|++|++ ++ ++||++||++.+.+++++
T Consensus 238 G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~~ 311 (415)
T cd03324 238 GPDNKLMIDANQRWDVPEAIEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFKQ 311 (415)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhccCC--CEEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHHH
Confidence 8999999999999999999999999999997 49999999999999999986 45 699999999999999999
Q ss_pred HHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc--------ceeccCCCcc
Q 014285 322 VMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI--------KYVNLNTPFL 392 (427)
Q Consensus 322 ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~--------~~~e~~~p~~ 392 (427)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++.++++|.++.+... .+.|+.. .
T Consensus 312 ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~--~ 386 (415)
T cd03324 312 LLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGRVIEYVD--H 386 (415)
T ss_pred HHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccchhhhHH--H
Confidence 999999999999999997 9999999999999999999996 677777776644331110 1222211 1
Q ss_pred cccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 393 ~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
..+++.+++.++||++.+|++||||+|++
T Consensus 387 -~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 387 -LHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred -HHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 13345677889999999999999999974
No 16
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=2.7e-60 Score=486.54 Aligned_cols=346 Identities=16% Similarity=0.220 Sum_probs=285.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~ 143 (427)
..||++++.++... ..|+....|.+ +..+.++|+|+||+|++||||+.+ ++.. ...++.++|.|+|+++.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~--~~~l~~lap~LiG~dp~~ 75 (441)
T TIGR03247 4 PVVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKI--RATLEDARPLVVGKPLGE 75 (441)
T ss_pred CEEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHH--HHHHHHHHHHhcCCCHHH
Confidence 56788887776332 22333333322 367889999999999999999853 1111 122356899999999999
Q ss_pred HHHHHHHHHHHCC-------CCh------hhhHHHHHHHHHHHHHHhhCCCChhhhhC-CC-CCceeeeeee---c----
Q 014285 144 LNFALDEIARILP-------GSE------FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITI---P---- 201 (427)
Q Consensus 144 ~~~~~~~l~~~~~-------g~~------~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i---~---- 201 (427)
++.+|+.|.+... +.. ..++++||||||||++||.+|+|||+||| |. ++++|+|.+. +
T Consensus 76 ~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~~~ 155 (441)
T TIGR03247 76 YQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDRKR 155 (441)
T ss_pred HHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccccc
Confidence 9999999976431 211 24689999999999999999999999999 64 7899998541 1
Q ss_pred ----------------------CCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 014285 202 ----------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEG 257 (427)
Q Consensus 202 ----------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~ 257 (427)
..+++++.++++++++ +||++||+|+|. +.++|+++++++|+..+++.|+||||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN~~ 235 (441)
T TIGR03247 156 TSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPNGA 235 (441)
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 1367888888888776 599999999996 5689999999999976999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
|++++|++++++|+++ + .|||||++++| +++|++|++ ++++||++||++++..+++++++.+++|++|+
T Consensus 236 wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 236 WSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999999999999998 7 49999999998 899999986 79999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccc--cCCCCCceeeeCcEEec
Q 014285 334 KLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS--EDPFVGGCEVSGAIYNF 411 (427)
Q Consensus 334 k~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~--~~~~~~~~~~~~G~i~~ 411 (427)
|+.+.|++++++++++|+++|+++++|+..+++|+.++++|+++++++.. .+++.++... ++++.+++.++||++.+
T Consensus 309 d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i~v 387 (441)
T TIGR03247 309 DPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKIQV 387 (441)
T ss_pred cCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEEec
Confidence 99765799999999999999999999998889999999999999988632 2344443222 35566778899999999
Q ss_pred CCCCCcccccCCCcC
Q 014285 412 TNARGQGGFLKWTIV 426 (427)
Q Consensus 412 p~~pGlGve~d~~~v 426 (427)
|++|||||++|+++|
T Consensus 388 p~~PGLGve~d~~~l 402 (441)
T TIGR03247 388 PDKPGLGVEIDMDAV 402 (441)
T ss_pred CCCCCCCceeCHHHH
Confidence 999999999999875
No 17
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=2.2e-60 Score=481.23 Aligned_cols=349 Identities=23% Similarity=0.357 Sum_probs=297.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|+|.+|+.+++.+|+..|+.++.++.+.+..++|+++|++|++|||||.+...... ...... ..+.+.+.|.++.++
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~-~~~~~~--~~~~~~l~g~d~~~i 77 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY-GEEAEA--VLLAPLLIGRDPFDI 77 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccc-hhhhhH--HHHHHHhcCCCHHHH
Confidence 57888999999999999999999888899999999999999999999997532111 111111 257899999999999
Q ss_pred HHHHHHHHHHC---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecC-C-CHHHHHHHHHHHhhc
Q 014285 145 NFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA-V-SPAEASELASKYCKL 218 (427)
Q Consensus 145 ~~~~~~l~~~~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~-~-~~~~~~~~~~~~~~~ 218 (427)
+.+|+.+.... .|....++++|||+||||++||.+|+|||+||||. ++++++|.+... . +++...+.++.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~ 157 (372)
T COG4948 78 ERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVEL 157 (372)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 99999998642 23334579999999999999999999999999998 578999988765 2 444445666666669
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||+.+|+|+|. +.+.|+++++++|++ +++++|++|||++||+++|++++++|+++++ .|||||++++|.+++++|+
T Consensus 158 G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~ 235 (372)
T COG4948 158 GFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRELR 235 (372)
T ss_pred CCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHHHH
Confidence 99999999997 466999999999996 5699999999999999999999999999996 5999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ .+++|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. ++++++++++|+
T Consensus 236 ~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~hl 309 (372)
T COG4948 236 A----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAALHL 309 (372)
T ss_pred h----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHHHH
Confidence 6 56799999999999999999999999999999999997 9999999999997777777765 599999999999
Q ss_pred HhhcCCcceeccCCCcccccC-----CCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKYVNLNTPFLLSED-----PFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~~e~~~p~~~~~~-----~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++.++ +.+++.+..+..+ ++.+++..+||++.+|++||||+|+|++.+
T Consensus 310 a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~ 363 (372)
T COG4948 310 AAALPN--FGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDAL 363 (372)
T ss_pred hhccch--hhhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHH
Confidence 998744 3455555544333 566677889999999999999999998864
No 18
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=3.6e-59 Score=463.55 Aligned_cols=317 Identities=20% Similarity=0.290 Sum_probs=276.2
Q ss_pred EEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHH-HHHHHH-HhhHhcCCCCCCHHHHH
Q 014285 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQSPPTTLNFAL 148 (427)
Q Consensus 73 ~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-~~~~l~g~~~~~~~~~~ 148 (427)
|.+++|++.|+.++.+++++++.++|||+|++|++||||+.+. |.++++..+. ...+.+ +.|.+.| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 3578999999999999999999999999999999999999864 5555543332 333444 6789999 999999999
Q ss_pred HHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEecc
Q 014285 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (427)
Q Consensus 149 ~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG 228 (427)
+.+.. ..+. +.+++||||||||++||..|+|+|+|||+.++++|+|.+++..+++++.+++++++++||++||+|+|
T Consensus 80 ~~~~~-~~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRS-LKGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHH-ccCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 98865 3333 46899999999999999999999999999889999999988889999999999999999999999997
Q ss_pred CCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 229 RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 229 ~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
. +.|+++++++|+.+|++.|++|||++|++++| +.+++|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 4 67899999999977999999999999999986 57899999987 49999999999999999986 7899999
Q ss_pred ecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceecc
Q 014285 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL 387 (427)
Q Consensus 309 ~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~ 387 (427)
+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++..++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999887765432343
Q ss_pred C-CCcccccCCCCCce
Q 014285 388 N-TPFLLSEDPFVGGC 402 (427)
Q Consensus 388 ~-~p~~~~~~~~~~~~ 402 (427)
. +..++..|++.+++
T Consensus 308 ~~~~~~~~~d~~~~~~ 323 (324)
T TIGR01928 308 SPSGYYFDQDIVAPSI 323 (324)
T ss_pred CCccccccccccCCCC
Confidence 2 33445556655443
No 19
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=7e-58 Score=453.74 Aligned_cols=316 Identities=24% Similarity=0.336 Sum_probs=273.3
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhc-CCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~-g~~~~~~~~~ 147 (427)
+++++++++|+++||.++.++.+.++.++|+|+ ++|.+||||++|.+.|+.........+..+.|.|. +. +.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGL---TREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCCCCHHHHHHHHHHHHHHHhCCC---CHHHH
Confidence 789999999999999999999999999999998 68999999999988765322333344566788886 22 22222
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
+. .+ + .+++++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+++++++++||++||+|
T Consensus 79 -~~---~~-~--~~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 79 -QK---LL-P--AGAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred -Hh---hc-c--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 11 12 2 2578999999999999999999999999996 678999999988899999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 227 iG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+|. +.|+++++++|+..+++.||+|||++|++++|+++++.|+++++ .|||||++++|+++++++ .+++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 975 46899999999976899999999999999999999999999997 499999999999888765 36899
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
|++||++++..+++++. +++|++|+|++++| ++++++++++|+++|+++|+|||+||+++.++++|+ .++..+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999998884 68999999999998 999999999999999999999999999999999999 3566777
Q ss_pred ccCCCcccccCCCCCceeeeCcEEec
Q 014285 386 NLNTPFLLSEDPFVGGCEVSGAIYNF 411 (427)
Q Consensus 386 e~~~p~~~~~~~~~~~~~~~~G~i~~ 411 (427)
|+++++.+.+|+. +++.+++|++.+
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~~ 321 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELHL 321 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEeC
Confidence 9998888777864 568889998753
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.3e-57 Score=449.67 Aligned_cols=310 Identities=35% Similarity=0.563 Sum_probs=277.6
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcch-HHHHHHHHHHhhHhcCCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-TKALVKVREACQFLRQSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~-~~~~~~~~~~~~~l~g~~~~~~~~~ 147 (427)
+++++.+++|++.|+.++.++...++.++|||+|+ |++|||||.+++.++++. ......++.++|.|.|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 36788999999999999999999999999999999 999999999887655533 22333455679999999999 9999
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhh-CCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF-GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll-gg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
++.|.....+ .+++++||||||||++||..|+|+|+|| |+.++++|+|++++..+++++.+.+++++++||+.||+|
T Consensus 79 ~~~l~~~~~~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik 156 (316)
T cd03319 79 LEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIK 156 (316)
T ss_pred HHHHHHhccC--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999775443 3568999999999999999999999995 555789999988888889999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 227 iG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+|.+.+.|+++++++|+..++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++|
T Consensus 157 ~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ip 230 (316)
T cd03319 157 LGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLP 230 (316)
T ss_pred eCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCC
Confidence 9988899999999999953399999999999999999999999999987 49999999999999999986 78999
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
|++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++|++|++++++|+++++ ..+.
T Consensus 231 Ia~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~ 308 (316)
T cd03319 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFV 308 (316)
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEE
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999987 3444
Q ss_pred ccCCC
Q 014285 386 NLNTP 390 (427)
Q Consensus 386 e~~~p 390 (427)
|++.+
T Consensus 309 ~~~~~ 313 (316)
T cd03319 309 DLDGP 313 (316)
T ss_pred eccCc
Confidence 55443
No 21
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=2.6e-57 Score=459.19 Aligned_cols=343 Identities=15% Similarity=0.203 Sum_probs=272.4
Q ss_pred ccccccccC--CcceeeEEEEEEEEEEeeccc--ccccccee--EEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHH
Q 014285 52 TSLGFKNLT--ETFWVDVQRAEGRELNVALSA--PLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA 125 (427)
Q Consensus 52 ts~g~~~~~--~~~~~~I~~i~~~~~~~pl~~--p~~~a~~~--~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~ 125 (427)
.+.|.|+.. .+|.+. .+..|+.. .++.+..+ .+..+.++|||+|++|++||||+.+. +. ..
T Consensus 16 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~vlVrI~td~G~~G~Ge~~~~-----~~-~~ 82 (394)
T PRK15440 16 GGGADYHDQGANHWIDD-------HIATPMSKYPEYRQSRQSFGINVLGTLVVEVEAENGQVGFAVSTAG-----EM-GA 82 (394)
T ss_pred CCCcccccCCCCccccc-------cccCchhcccccccCCCcceeeccceEEEEEEECCCCEEEEeCCCc-----HH-HH
Confidence 456888765 477764 22344432 23333333 35678899999999999999996431 11 11
Q ss_pred HHHHHHHhhHhcCCCCCCHHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee
Q 014285 126 LVKVREACQFLRQSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI 200 (427)
Q Consensus 126 ~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i 200 (427)
....+.+.|.|+|+++.+++.+|+.|++.. .+ ....++++|||+|||||+||.+|+|||+||||. ++++|+|.+.
T Consensus 83 ~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~ 162 (394)
T PRK15440 83 FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATG 162 (394)
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecC
Confidence 112245889999999999999999997642 22 223468999999999999999999999999996 7899998753
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEecc--C-----CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVG--R-----NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG--~-----~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
. .++ + ..++||+++|+|+| + ++++|+++++++|+ ++|++.|+||||++|++++|++++++|++
T Consensus 163 ~--~~~-~------a~~~Gf~~~Kik~~~g~~~g~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~ 233 (394)
T PRK15440 163 A--RPD-L------AKEMGFIGGKMPLHHGPADGDAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAP 233 (394)
T ss_pred C--ChH-H------HHhCCCCEEEEcCCcCcccchHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 2 222 1 13689999999994 2 35889999999999 58999999999999999999999999999
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHH
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATR 351 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~ 351 (427)
+++. |+|||++++|+++|++|++.. .+++||+.||++.+..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 234 ~~l~--wiEEPl~~~d~~~~~~L~~~~--~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~ 309 (394)
T PRK15440 234 YGLK--WIEECLPPDDYWGYRELKRNA--PAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAK 309 (394)
T ss_pred cCCc--ceeCCCCcccHHHHHHHHHhC--CCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHH
Confidence 9974 999999999999999998621 24589999999999999999999999999999999997 999999999999
Q ss_pred HcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC--CCc-----ccccCCCCCceeeeCcEEecC--CCCCcccccC
Q 014285 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN--TPF-----LLSEDPFVGGCEVSGAIYNFT--NARGQGGFLK 422 (427)
Q Consensus 352 ~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~--~p~-----~~~~~~~~~~~~~~~G~i~~p--~~pGlGve~d 422 (427)
++|+++++|+. .++++|++++++|..+.|+. .|. ....+.+...+.++||++.+| ++||||+|+|
T Consensus 310 a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld 383 (394)
T PRK15440 310 ARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDADTVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELN 383 (394)
T ss_pred HcCCeecccCH------HHHHHHHHhhCcCceeEEecccCccccccccchhhhhcCCCeeeCCEEECCCCCCCccCcccC
Confidence 99999999962 35788999999998877752 111 111122223366789999999 9999999999
Q ss_pred CCcC
Q 014285 423 WTIV 426 (427)
Q Consensus 423 ~~~v 426 (427)
++++
T Consensus 384 ~~~~ 387 (394)
T PRK15440 384 RDCN 387 (394)
T ss_pred HHHH
Confidence 9864
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=2.7e-55 Score=424.53 Aligned_cols=257 Identities=31% Similarity=0.501 Sum_probs=244.1
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 149 (427)
|+++++++|+++||.++.++.+.++.++|+|+|++|.+||||++
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 46789999999999999999999999999999999999999985
Q ss_pred HHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC
Q 014285 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (427)
Q Consensus 150 ~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~ 229 (427)
++|||+||||+.||..|+|+++|+|+.++++|+|++++..+++++.+++++++++||++||+|+|.
T Consensus 45 --------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~ 110 (265)
T cd03315 45 --------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR 110 (265)
T ss_pred --------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 589999999999999999999999998899999999888889999999999999999999999998
Q ss_pred CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 230 NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 230 ~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
+.++|++++++||+. ++++.|++|+|++|++++|+++++.|+++++ .|||||++.+|++++++|++ .+++||+
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia 184 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPIM 184 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCEE
Confidence 888999999999995 6899999999999999999999999999987 49999999999999999986 7899999
Q ss_pred ecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc
Q 014285 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 309 ~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++++..
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~ 259 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRAV 259 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999998643
No 23
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=2.1e-52 Score=411.73 Aligned_cols=288 Identities=23% Similarity=0.299 Sum_probs=245.8
Q ss_pred EEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCCCHHHHHHHH
Q 014285 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTTLNFALDEI 151 (427)
Q Consensus 73 ~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~l 151 (427)
|.+++|++.||.++.++.+.++.++|+|+ ++|.+|||||.|+|.|++++.+ ....+..+.+.+.++++.++..
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 46789999999999999999999999999 5699999999999988886554 3345567888888776543321
Q ss_pred HHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-C
Q 014285 152 ARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-N 230 (427)
Q Consensus 152 ~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~ 230 (427)
..+++++||||||||+.||. +.|. ...+...++++.+++++.+++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12578999999999999987 2211 22233456667888888776665 7899999999996 6
Q ss_pred chhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 231 ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 231 ~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+++|++++++||+. ++++.||||||++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 88999999999995 6779999999999999999999999997 776 5999999865 89999976 68999
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+++++++....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999877666
Q ss_pred ccCCCcc
Q 014285 386 NLNTPFL 392 (427)
Q Consensus 386 e~~~p~~ 392 (427)
.++++..
T Consensus 289 ~~~~~~~ 295 (307)
T TIGR01927 289 VGFTTAL 295 (307)
T ss_pred CCccHHH
Confidence 6666543
No 24
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=9.8e-53 Score=406.08 Aligned_cols=250 Identities=28% Similarity=0.398 Sum_probs=231.2
Q ss_pred EEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 014285 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (427)
Q Consensus 71 ~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 150 (427)
+++++++|+++||.++.++++.++.++|+|+|++|.+||||+.|.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 4678999999999999999999999999999999999999998642
Q ss_pred HHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC
Q 014285 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (427)
Q Consensus 151 l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~ 229 (427)
+++||||||||+.||..| ||. ++++|+|.+++..++ ++.+.+++++++||++||+|+|.
T Consensus 48 ------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg~ 107 (263)
T cd03320 48 ------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVGA 107 (263)
T ss_pred ------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEECC
Confidence 479999999999999998 665 789999999888777 55567888889999999999996
Q ss_pred -CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeE
Q 014285 230 -NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (427)
Q Consensus 230 -~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPI 307 (427)
++++|++++++||+. ++++.|++|||++|++++|+++++.|+++++ .|||||++++|++++++|+ +++||
T Consensus 108 ~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~------~~~PI 179 (263)
T cd03320 108 TSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELRRLA------AGVPI 179 (263)
T ss_pred CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCC--ceEECCCChHHHHHHHHhh------cCCCe
Confidence 578999999999995 6799999999999999999999999999987 4999999999999999884 68999
Q ss_pred EecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc
Q 014285 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 308 a~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++++++.
T Consensus 180 a~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 180 ALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999998873
No 25
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=2e-50 Score=400.16 Aligned_cols=295 Identities=20% Similarity=0.209 Sum_probs=247.7
Q ss_pred EEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH-HHHHHHhhHhcCCCCCCHHH
Q 014285 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNF 146 (427)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~~~~~l~g~~~~~~~~ 146 (427)
++++++++++|++.||.++.++.+.++.++|+|+ ++|.+|||||+|.|.|++++.+.. ..+.+..+.+.+.+..+.
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~-- 78 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDE-- 78 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccccc--
Confidence 4789999999999999999999999999999997 789999999999999988655433 345553333444433321
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
...++++++++++|+||+.||..|.|++.. .+++..+++++.++++++ +||++||+|
T Consensus 79 ----------~~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 79 ----------LSQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred ----------cccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 123467899999999999999999988621 224456888888888876 899999999
Q ss_pred ccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 227 iG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
+|. ++++|++++++||+..+++.||+|||++|++++|++++++|++ +++ .|||||++. .+++++|++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 995 7889999999999966899999999999999999999999998 876 599999964 567888875 7
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCC
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~ 381 (427)
+++||++||++.+.. ....+ .++++++|+|++++| ++++++++++|+++|+++++||++||+|+.++++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 899999999999975 44444 567999999999998 999999999999999999999999999999999999999966
Q ss_pred cceeccCCCcccccCCC
Q 014285 382 IKYVNLNTPFLLSEDPF 398 (427)
Q Consensus 382 ~~~~e~~~p~~~~~~~~ 398 (427)
..+++++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 56777887777766643
No 26
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=5.2e-50 Score=396.98 Aligned_cols=282 Identities=21% Similarity=0.284 Sum_probs=234.3
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH-HHHHHHhhHhcCCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~~~~~l~g~~~~~~~~~ 147 (427)
+++++++++|++.||.++.++.+.++.++|+|+|++|++||||++|.|.|++++.+.. ..++.+.|.+.++ .+
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------QI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------HH
Confidence 5779999999999999999999999999999999999999999999998887654433 2233344444321 11
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEec
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKi 227 (427)
..+. ..++++++|+|+|+.|+.++..+. ....+|++.++ .+++++.+++++++++||++||+|+
T Consensus 78 -~~~~-----~~~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 78 -FSIP-----DALPACQFGFESALENESGSRSNV--------TLNPLSYSALL--PAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred -Hhhh-----hcCCHHHHHHHHHHHHHhcccccC--------CcCCCceeeec--CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 1111 123578999999933455554221 12345555444 4567888899999999999999999
Q ss_pred cC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 228 GR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 228 G~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
|. ++++|++++++||+. ++++.|++|||++|++++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 97 578899999999995 7899999999999999999999999998 676 59999999999999999986 7
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCC
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~ 381 (427)
+++||++||++.+..+++++++.+++|++|+|++++| ++++ .++|+++|+++++||++||+||++|++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999997 9854 46799999999999999999999999999999876
No 27
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=3.5e-49 Score=398.55 Aligned_cols=286 Identities=17% Similarity=0.224 Sum_probs=242.9
Q ss_pred eeeEEEEEEEEcCCceEEEEeecCCCCCcch-------HH-HHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCChhh
Q 014285 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-------TK-ALVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSEFA 161 (427)
Q Consensus 92 ~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~-------~~-~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~~~ 161 (427)
..+.++|+|+|++|.+|||||+|. .|+++. .+ ....++ .+.|.|+|+++.+++.+++.|.... .+...+
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~~ 126 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLHT 126 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcchh
Confidence 468899999999999999999974 566632 23 233444 4899999999999999999998753 121234
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhhC------CCCCceeeeeeecC---CCHHHHHHHHHHHhhcC-CcEEEEeccCCc
Q 014285 162 SVRAGVEMALIDAVANSIDIPLWRLFG------GASNSLSTAITIPA---VSPAEASELASKYCKLG-FSTLKLNVGRNI 231 (427)
Q Consensus 162 ~a~~aie~Al~Dl~gk~~g~Pl~~Llg------g~~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G-f~~iKlKiG~~~ 231 (427)
++++|||+||||++||..|+|+|+||| +.++++|+|++++. .++++|...+++++++| |+.+| |+|.+.
T Consensus 127 a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~ 205 (408)
T TIGR01502 127 AIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLDG 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCCH
Confidence 678999999999999999999999998 55789999999874 57899999999999998 99999 899865
Q ss_pred hhhH-------HHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHhhh----CCCCCceEeCCCCCCC----hh
Q 014285 232 TADF-------DVLQAIHAVHPHCSFILDANE------GYTSEEAVEVLGKLND----MGVIPVLFEQPVHRDD----WS 290 (427)
Q Consensus 232 ~~d~-------~~l~~ir~~~~~~~L~vDAN~------~~s~~~A~~~l~~L~~----~~l~~~~iEqP~~~~d----~~ 290 (427)
.+|. ++++++|+.+++..|+||+|+ +|++++|+++++.|++ +++ |||||++.+| ++
T Consensus 206 ~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~e 282 (408)
T TIGR01502 206 EKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQIE 282 (408)
T ss_pred HHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhHH
Confidence 4444 566666644568899999998 9999999999999986 553 9999999865 99
Q ss_pred hHHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhH
Q 014285 291 GLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRL 367 (427)
Q Consensus 291 ~~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~i 367 (427)
++++|++.++ +.+++||++||++.++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+|
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 9999986321 126999999999999999999999999999999999997 999999999999999999999986 9999
Q ss_pred HHHHHHHHHhhcCCc
Q 014285 368 ATGFALHLAAGLGCI 382 (427)
Q Consensus 368 g~~a~~hlaaal~~~ 382 (427)
+.++++|++++++..
T Consensus 363 ~~aa~~Hlaaa~~~~ 377 (408)
T TIGR01502 363 SAEVTTHVGMATGAR 377 (408)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987653
No 28
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.8e-49 Score=395.30 Aligned_cols=288 Identities=18% Similarity=0.238 Sum_probs=233.5
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCCC---Ccch-----HHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCCh-hh
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPLV---TGDQ-----TKALVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSE-FA 161 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~~---s~~~-----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~-~~ 161 (427)
.+.++|||+||+|++||||+.+. .+ +++. ......++ .+.|.|+|+|+.+++.+|+.|++.. .|+. ..
T Consensus 12 ~~~vlV~I~tddG~~G~GEa~~~-~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~ 90 (369)
T cd03314 12 GEAISVMLVLEDGQVAVGDCAAV-QYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHT 90 (369)
T ss_pred CcEEEEEEEECCCCEEEEecccc-cccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchh
Confidence 46899999999999999999753 22 2221 12222343 4889999999999999999997643 2332 24
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhhC-----CC-CCceeeeeeecCC---CHHHHHHHHHHHhhc---------CCcEE
Q 014285 162 SVRAGVEMALIDAVANSIDIPLWRLFG-----GA-SNSLSTAITIPAV---SPAEASELASKYCKL---------GFSTL 223 (427)
Q Consensus 162 ~a~~aie~Al~Dl~gk~~g~Pl~~Llg-----g~-~~~ip~~~~i~~~---~~~~~~~~~~~~~~~---------Gf~~i 223 (427)
++++|||+||||+.||.+|+|||+||| |. ++++|+|.+++.. ..+++.+++++++++ ||+.+
T Consensus 91 aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~ 170 (369)
T cd03314 91 AIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGE 170 (369)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHH
Confidence 578999999999999999999999999 43 6899999876542 356666666555533 55555
Q ss_pred EEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCC----C--CHHHHHHHHHHhhhC-C-CCCceEeCCCCCCC----hhh
Q 014285 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEG----Y--TSEEAVEVLGKLNDM-G-VIPVLFEQPVHRDD----WSG 291 (427)
Q Consensus 224 KlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~----~--s~~~A~~~l~~L~~~-~-l~~~~iEqP~~~~d----~~~ 291 (427)
|+|. +.++|.++++++|..++++.|+||+|++ | |+++|+++++.|+++ + + +.|||||++++| +++
T Consensus 171 K~~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~ 247 (369)
T cd03314 171 KLLE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIER 247 (369)
T ss_pred HHHH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHH
Confidence 5554 3567889999999668999999999986 6 999999999999976 2 2 359999999865 899
Q ss_pred HHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHH
Q 014285 292 LHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLA 368 (427)
Q Consensus 292 ~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig 368 (427)
|++|++..+ +.+++||++||++.++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+|+
T Consensus 248 ~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~ 327 (369)
T cd03314 248 MAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDIS 327 (369)
T ss_pred HHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHH
Confidence 999986210 115899999999999999999999999999999999998 999999999999999999999874 99999
Q ss_pred HHHHHHHHhhcCCcce
Q 014285 369 TGFALHLAAGLGCIKY 384 (427)
Q Consensus 369 ~~a~~hlaaal~~~~~ 384 (427)
.++++|+++++++...
T Consensus 328 ~aa~lHlaaa~~~~~~ 343 (369)
T cd03314 328 ARVTVHVALATRADQM 343 (369)
T ss_pred HHHHHHHHHhcCCcce
Confidence 9999999999887643
No 29
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=5.3e-49 Score=457.20 Aligned_cols=313 Identities=25% Similarity=0.315 Sum_probs=257.8
Q ss_pred cccccccccccCCcceeeEEEEEEEEEEeecccccccccee--EEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH
Q 014285 49 SERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126 (427)
Q Consensus 49 ~~~ts~g~~~~~~~~~~~I~~i~~~~~~~pl~~p~~~a~~~--~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~ 126 (427)
+..-+.|++. |||++++++++++|++.|+.++.++ ...++.++|+|+|++|.+|||||+|++.++.+..+..
T Consensus 921 ~~~~~~~~~~------~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~et~~~~~ 994 (1655)
T PLN02980 921 LHSIIDGVFL------CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHEEDLLDVE 994 (1655)
T ss_pred cccccccccc------ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCCccccccHH
Confidence 4444555544 9999999999999999999999875 3468999999999999999999999865432211111
Q ss_pred HHH------------HHHhhHhcCCCCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC---
Q 014285 127 VKV------------REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS--- 191 (427)
Q Consensus 127 ~~~------------~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~--- 191 (427)
..+ ..+.|.|.|.+. +.+|+.+.. ..+..++++++||||||||+.||..|+|+|+||||.+
T Consensus 995 ~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~ 1070 (1655)
T PLN02980 995 EQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDE 1070 (1655)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCc
Confidence 111 123577777733 333444421 1123468899999999999999999999999998743
Q ss_pred ------Cceeeeeee-cCCCHHHHHHHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHH
Q 014285 192 ------NSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHA-VHPHCSFILDANEGYTSE 261 (427)
Q Consensus 192 ------~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~ 261 (427)
.++|+|..+ +..+++++.+++++++++||+++|+|+|. ++++|++++++||+ .+++++||+|||++|+++
T Consensus 1071 ~~~~~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~ 1150 (1655)
T PLN02980 1071 NGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYE 1150 (1655)
T ss_pred ceeccccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHH
Confidence 346666655 45689999999999999999999999995 57899999999999 578999999999999999
Q ss_pred HHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHH-----HHHHHHcCCCcEEEeCCC
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND-----VQKVMQENLASVVNIKLA 336 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~-----~~~ll~~~a~~~i~lk~~ 336 (427)
+|++++++|+++++. |||||++ +++++++|++ ++++|||+||++.+..+ ++++++.+ ++++++|++
T Consensus 1151 ~A~~~~~~L~~~~i~--~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~-~~~i~iK~~ 1221 (1655)
T PLN02980 1151 EAIEFGSLVKSCNLK--YIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPG-IVAVVIKPS 1221 (1655)
T ss_pred HHHHHHHHHhhcCCC--EEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCC-CeEEEeChh
Confidence 999999999999874 9999997 5789999986 78999999999998754 66777665 557899999
Q ss_pred Ccc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcC
Q 014285 337 KFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~ 380 (427)
++| ++++++++++|+++|+++++||++||+||++|++|+++.++
T Consensus 1222 ~~GGit~~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~ 1266 (1655)
T PLN02980 1222 VVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLE 1266 (1655)
T ss_pred hhCCHHHHHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhch
Confidence 998 99999999999999999999999999999999999998873
No 30
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=2.2e-48 Score=368.36 Aligned_cols=225 Identities=27% Similarity=0.504 Sum_probs=211.5
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 149 (427)
++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678899999999999999999999999999999999999999
Q ss_pred HHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEecc
Q 014285 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (427)
Q Consensus 150 ~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG 228 (427)
++||||||||+.||.+|+|||+|+||. ++++|+|.+
T Consensus 44 --------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~----------------------------- 80 (229)
T cd00308 44 --------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS----------------------------- 80 (229)
T ss_pred --------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH-----------------------------
Confidence 689999999999999999999999996 788998765
Q ss_pred CCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeE
Q 014285 229 RNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (427)
Q Consensus 229 ~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPI 307 (427)
+++++++|+. ++++.|++|||++|++++|+++++.|+++++ .|||||++++|++++++|++ .+++||
T Consensus 81 ------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pI 148 (229)
T cd00308 81 ------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIPI 148 (229)
T ss_pred ------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCCE
Confidence 7889999995 6899999999999999999999999999987 59999999999999999986 689999
Q ss_pred EecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceec
Q 014285 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (427)
Q Consensus 308 a~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e 386 (427)
++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+++.++++|++++++|..+.|
T Consensus 149 a~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~e 228 (229)
T cd00308 149 AADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAIE 228 (229)
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhhc
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999876543
No 31
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=9.7e-43 Score=344.20 Aligned_cols=280 Identities=24% Similarity=0.326 Sum_probs=230.4
Q ss_pred EEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 014285 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (427)
Q Consensus 71 ~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 150 (427)
+...|++||+ .....++.|+.++++ |-.||||.+|++.|+.+ ++ ..+
T Consensus 13 ~~~~~~~p~~----~~~~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~--~~---~~~------------------- 59 (327)
T PRK02901 13 RAHVVALPMR----VRFRGITVREAVLIE-----GPAGWGEFSPFLEYDPA--EA---AAW------------------- 59 (327)
T ss_pred cCeEEecccc----cccCCcceeEEEEEe-----cCCceEEecCCCCCCHH--HH---HHH-------------------
Confidence 3456778887 344567889999988 88899999999887652 11 111
Q ss_pred HHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-
Q 014285 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR- 229 (427)
Q Consensus 151 l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~- 229 (427)
..+++|.|- .|-| ...+++||+|.+++..+++++.+.++++ .||+++|+|+|.
T Consensus 60 ------------~~~~~~~~~-------~~~~-----~~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~~ 113 (327)
T PRK02901 60 ------------LASAIEAAY-------GGPP-----PPVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAEP 113 (327)
T ss_pred ------------HHHHHHhhh-------ccCC-----cccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECCC
Confidence 123444431 0111 1336889999998888888877666554 699999999974
Q ss_pred --CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC
Q 014285 230 --NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (427)
Q Consensus 230 --~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i 305 (427)
++++|++++++||+ .||++.||||||++||+++|+++++.| +++++ .||||||+. +++|++|++ ++++
T Consensus 114 ~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~v 185 (327)
T PRK02901 114 GQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVGV 185 (327)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCCC
Confidence 68899999999999 579999999999999999999999999 77887 599999974 899999986 7899
Q ss_pred eEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcce
Q 014285 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY 384 (427)
Q Consensus 306 PIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~ 384 (427)
|||+||++.+..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||++||+||+++++|+++++++..+
T Consensus 186 PIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~~ 262 (327)
T PRK02901 186 PIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELDH 262 (327)
T ss_pred CEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999998 998887 579999999999999999999999999999998765
Q ss_pred -eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 385 -VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 385 -~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++..++..++ .+++.++||++.+|+ +++|++.+
T Consensus 263 ~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l 299 (327)
T PRK02901 263 ACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARL 299 (327)
T ss_pred ccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHH
Confidence 4666544455666 677889999999998 89998765
No 32
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=2.9e-38 Score=323.32 Aligned_cols=297 Identities=23% Similarity=0.292 Sum_probs=226.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALV 127 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~ 127 (427)
|+|++|..+.+- .+. .+++|.|+|+|++|.+|+|++.... .|.+ ....++.
T Consensus 2 ~~I~~v~~r~i~--------dsr----g~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSR----GNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCC----CCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 478988886642 122 2678999999999999999985321 1223 2233444
Q ss_pred HHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CC--ceeeeee
Q 014285 128 KVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SN--SLSTAIT 199 (427)
Q Consensus 128 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~--~ip~~~~ 199 (427)
.++ .+.|.|+|+++.+++.+|+.|.+.. .+....++++|||||+||+.||..|+|||+||||. ++ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 454 4899999999999999999997631 11122478999999999999999999999999996 33 4555443
Q ss_pred ecC----CC---HHH-H--------HHHHHHHhhcCCcEEEE---------ecc------CCchhhHHHHHHHHHh----
Q 014285 200 IPA----VS---PAE-A--------SELASKYCKLGFSTLKL---------NVG------RNITADFDVLQAIHAV---- 244 (427)
Q Consensus 200 i~~----~~---~~~-~--------~~~~~~~~~~Gf~~iKl---------KiG------~~~~~d~~~l~~ir~~---- 244 (427)
++. .. ..+ | .+++.++..+||+.+|. ++| ++++.|.++|+.||+.
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 11 111 1 13333444566888886 355 3567899999999984
Q ss_pred ----CCCcEEEEeCC-------CC-------CCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--
Q 014285 245 ----HPHCSFILDAN-------EG-------YTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-- 303 (427)
Q Consensus 245 ----~~~~~L~vDAN-------~~-------~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~-- 303 (427)
|+++.|+||+| +. |+++++.+++..+ ++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 68899999993 43 5778888776665 56886 59999999999999999986 55
Q ss_pred CCeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE-cccCchhHHHHHHHHHHhhc
Q 014285 304 GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 304 ~iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hlaaal 379 (427)
.+||++||. +.++.+++++++.+++|++++|++++| ++++++++++|+++|+.+++ |++.|++.+..+.+|++.+.
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~ 382 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNA 382 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCC
Confidence 699999997 467999999999999999999999998 99999999999999998766 88889999887777776654
No 33
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=1.6e-37 Score=316.38 Aligned_cols=281 Identities=25% Similarity=0.335 Sum_probs=219.9
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC----------------CCCcc-hHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTGD-QTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~~-~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.++|.|+|+|++|.+|+|++.... .|+++ ...++..++ .+.|.|+|+++.+++.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 578999999999999999986421 13442 233444454 488999999999999999999753
Q ss_pred C----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC-Cceeeee--eecC-----C--C-------H--HHHHHH
Q 014285 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTAI--TIPA-----V--S-------P--AEASEL 211 (427)
Q Consensus 155 ~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~-~~ip~~~--~i~~-----~--~-------~--~~~~~~ 211 (427)
. .+....++++|||||+||+.||..|+|||++|||.. .++|++. .++. + + | ..+.++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 1 122235789999999999999999999999999964 4555543 2221 0 1 1 122345
Q ss_pred HHHHhhcCCcEEE-----------Eecc------CCchhhHHHHHHHHH-h-------CCCcEEEEeC------------
Q 014285 212 ASKYCKLGFSTLK-----------LNVG------RNITADFDVLQAIHA-V-------HPHCSFILDA------------ 254 (427)
Q Consensus 212 ~~~~~~~Gf~~iK-----------lKiG------~~~~~d~~~l~~ir~-~-------~~~~~L~vDA------------ 254 (427)
+.++..+||+.+| +++| ++++.|.++|+.+|+ + |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 5666778898888 3333 356789999988887 4 5689999999
Q ss_pred -----CCCCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--CCeEEecCC-CCCHHHHHHHHHc
Q 014285 255 -----NEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQE 325 (427)
Q Consensus 255 -----N~~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~--~iPIa~dE~-~~~~~~~~~ll~~ 325 (427)
|+.||+++|+++++.| ++|++ .|||||++++|++++++|++ ++ ++||++||. +.++.+++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 4558889999999887 46886 59999999999999999986 44 899999995 5789999999999
Q ss_pred CCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE-cccCchhHHHHHHHHHHhhcCC
Q 014285 326 NLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 326 ~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hlaaal~~ 381 (427)
++++++++|++++| ++++++++++|+++|+++++ |++.|+..... +|++.++++
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~--adlava~~~ 382 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFI--ADLAVALGA 382 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHH--HHHHHHhCc
Confidence 99999999999998 99999999999999999987 77778877544 466655554
No 34
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=3.4e-37 Score=315.53 Aligned_cols=282 Identities=23% Similarity=0.301 Sum_probs=215.6
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.++|.|+|+|++|.+|++++..... |.+ ....++..++ .+.|.|+|+++.+++.+|+.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999854211 112 1223444454 478999999999999999999763
Q ss_pred --CCC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee----cC--C---CHHHHH---------HH
Q 014285 155 --LPG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI----PA--V---SPAEAS---------EL 211 (427)
Q Consensus 155 --~~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i----~~--~---~~~~~~---------~~ 211 (427)
.++ ....++++|||||+||+.||..|+|||+||||. ++++|++... +. . +.+++. ++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 111 122468999999999999999999999999996 5677776442 11 1 334321 22
Q ss_pred HHHHhhcCCcEEE--Ee-------cc------CCch---hhHHHH-HHHHH----hCCCcEEEEeCCCC-----------
Q 014285 212 ASKYCKLGFSTLK--LN-------VG------RNIT---ADFDVL-QAIHA----VHPHCSFILDANEG----------- 257 (427)
Q Consensus 212 ~~~~~~~Gf~~iK--lK-------iG------~~~~---~d~~~l-~~ir~----~~~~~~L~vDAN~~----------- 257 (427)
+.+...+||+.+| +| +| ++++ ++++++ +++++ .++++.|++|+|.+
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3333347899999 44 45 2222 334433 44444 35789999999732
Q ss_pred -------CCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--CCeEEecCCC-CCHHHHHHHHHcC
Q 014285 258 -------YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADESC-RSLNDVQKVMQEN 326 (427)
Q Consensus 258 -------~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~--~iPIa~dE~~-~~~~~~~~ll~~~ 326 (427)
||+++|+++++. +++|++ .|||||++++|++++++|++ ++ ++||++||++ .++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 467799999995 678886 59999999999999999986 56 7999999985 4699999999999
Q ss_pred CCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEE-EcccCchhHHHHHHHHHHhhcC
Q 014285 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM-IDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 327 a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~-~~s~~es~ig~~a~~hlaaal~ 380 (427)
++|++++|++++| ++++++++++|+++|++++ .|++.|++++..|.+|++.+.+
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~ 384 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAG 384 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcC
Confidence 9999999999998 9999999999999999955 5888899999988888877654
No 35
>PLN00191 enolase
Probab=100.00 E-value=4.2e-31 Score=270.39 Aligned_cols=297 Identities=20% Similarity=0.252 Sum_probs=225.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCc----------eEEEEeecCCC----CCc-chHHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL----VTG-DQTKALVKV 129 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~----------~G~GE~~~~~~----~s~-~~~~~~~~~ 129 (427)
++|++|+.+.+- .+. ..++|.|+|+|++|. +|++|+..++. |.+ ....++..+
T Consensus 26 ~~I~~v~~r~il--------dsr----G~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSR----GNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCC----CCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 579999887642 222 267899999999998 78888865422 333 344455555
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhh---CCC-CCceeeeee-
Q 014285 130 RE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA-SNSLSTAIT- 199 (427)
Q Consensus 130 ~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll---gg~-~~~ip~~~~- 199 (427)
++ +.|.|+|.++.+++.+++.|.+.. .+....++..|++||+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 44 899999999999999998887542 12234678999999999999999999999999 764 456776541
Q ss_pred ---ec----------------C--CCHHHHHHH-------HHHHhhc--CCcEEEEecc------CCchhhHHHHHHHHH
Q 014285 200 ---IP----------------A--VSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITADFDVLQAIHA 243 (427)
Q Consensus 200 ---i~----------------~--~~~~~~~~~-------~~~~~~~--Gf~~iKlKiG------~~~~~d~~~l~~ir~ 243 (427)
.+ . .+..+..+. ..+.++. |... ..+| ++++.+.+.|+.|++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 11 1 133332221 1121121 4321 1233 245666676766665
Q ss_pred ----hC--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHH
Q 014285 244 ----VH--PHCSFILDANEG--------Y---------------TSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLH 293 (427)
Q Consensus 244 ----~~--~~~~L~vDAN~~--------~---------------s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~ 293 (427)
++ +++.|.+|+..+ | |.++++++++.|.+ |++ .|||||++.+||++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 22 579999998433 4 88999999999755 876 5999999999999999
Q ss_pred HHHHhhccccCCeEEecCCC-CCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc-cCchhHHHH
Q 014285 294 DVSNFARDTYGISVVADESC-RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATG 370 (427)
Q Consensus 294 ~L~~~~r~~~~iPIa~dE~~-~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~ 370 (427)
+|++ ++.+||++||++ .++.+++++++.++++++++|++++| ++++++++++|+++|+++|+++ +.||+++..
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9986 688999999986 88999999999999999999999998 9999999999999999999965 889999999
Q ss_pred HHHHHHhhcCC
Q 014285 371 FALHLAAGLGC 381 (427)
Q Consensus 371 a~~hlaaal~~ 381 (427)
|.+|++++.+.
T Consensus 406 Adlava~~~~~ 416 (457)
T PLN00191 406 ADLAVGLATGQ 416 (457)
T ss_pred HHHHHHhCCCc
Confidence 99999987653
No 36
>PTZ00081 enolase; Provisional
Probab=99.97 E-value=1.3e-28 Score=251.34 Aligned_cols=296 Identities=22% Similarity=0.292 Sum_probs=215.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCc----------eEEEEeecCCC-----CCc-chHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL-----VTG-DQTKALVK 128 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~----------~G~GE~~~~~~-----~s~-~~~~~~~~ 128 (427)
|+|++|+.+.+- .+.| +++|.|+|+|++|. +|++|+..++. |.+ ....++..
T Consensus 2 ~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~ 69 (439)
T PTZ00081 2 STIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEN 69 (439)
T ss_pred cEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHH
Confidence 689999886642 2222 57899999999998 99999865432 333 34455555
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHCCC----------ChhhhHHHHHHHHHHHHHHhhCCCChhhhh---CCC---C
Q 014285 129 VRE-ACQFLRQSPPTTLNFALDEIARILPG----------SEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA---S 191 (427)
Q Consensus 129 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g----------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll---gg~---~ 191 (427)
+++ +.|.|+|+++.+++.+++.|.+.+.| ....++..|++||+|++.|+..|+|||++| |+. .
T Consensus 70 v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~ 149 (439)
T PTZ00081 70 VNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDK 149 (439)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCC
Confidence 544 79999999999999999988773222 223678999999999999999999999999 554 1
Q ss_pred Cce--eeeeeec------------------C--CCHHHHHHH-------HHHHhhc--CCcEEEEecc------CCchhh
Q 014285 192 NSL--STAITIP------------------A--VSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITAD 234 (427)
Q Consensus 192 ~~i--p~~~~i~------------------~--~~~~~~~~~-------~~~~~~~--Gf~~iKlKiG------~~~~~d 234 (427)
..+ |.+..+. . .+..+..+. .++.++. |... .-+| ++++.+
T Consensus 150 ~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~~ 227 (439)
T PTZ00081 150 FVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKDP 227 (439)
T ss_pred ccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCCH
Confidence 233 4443211 1 133332221 1122221 4321 1233 234445
Q ss_pred HHHHHHHHH----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHhhhCCCCCceEeCC
Q 014285 235 FDVLQAIHA----VH--PHCSFILDANE------------------------GYTSEEAVEVL-GKLNDMGVIPVLFEQP 283 (427)
Q Consensus 235 ~~~l~~ir~----~~--~~~~L~vDAN~------------------------~~s~~~A~~~l-~~L~~~~l~~~~iEqP 283 (427)
.+.++.+++ ++ +++.|.+|+.. .+|.+|.++++ +.+++|++ .|||||
T Consensus 228 eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IEDP 305 (439)
T PTZ00081 228 EEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIEDP 305 (439)
T ss_pred HHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEcC
Confidence 555555544 33 46888888732 35777777755 57789986 599999
Q ss_pred CCCCChhhHHHHHHhhcccc--CCeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE
Q 014285 284 VHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 284 ~~~~d~~~~~~L~~~~r~~~--~iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~ 359 (427)
++.+||+++++|++ ++ ++||++||. ++++.+++++++.++++++++|++++| ++++++++++|+++|+++++
T Consensus 306 l~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 306 FDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 56 899999997 577999999999999999999999998 99999999999999999999
Q ss_pred cccC-chhHHHHHHHHHHhhcCCc
Q 014285 360 DGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 360 ~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
++.. |+. ..+++|||.++++.
T Consensus 382 shrsgETe--d~~iadLAVa~~~~ 403 (439)
T PTZ00081 382 SHRSGETE--DTFIADLVVGLGTG 403 (439)
T ss_pred eCCCchhH--HHHHHHHHHHcCCC
Confidence 6655 664 56788999998775
No 37
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.96 E-value=4.2e-28 Score=219.42 Aligned_cols=275 Identities=20% Similarity=0.222 Sum_probs=211.7
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-H-HHHHHHHhhHhcCCCCCCHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-A-LVKVREACQFLRQSPPTTLNF 146 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~-~~~~~~~~~~l~g~~~~~~~~ 146 (427)
+..+|+|++|+...+..-...+..|++++|++.. ++..||||.+|+|++|.++.+ + ...+.++-..+.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~~-~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLRE-GEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEee-CCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 4578999999999888888888999999999985 678999999999999875432 1 122334455566654432
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
..+||+.||+.||+..+++-... .+....-| +..+||+++......+ .|-+.-|+|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~nY~~AP----LC~GDPDeL~~~L~~m--pGeKvAKvK 134 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AANYRVAP----LCTGDPDELYLKLADM--PGEKVAKVK 134 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcCccccc----CcCCCHHHHHHHHhcC--Ccceeeeee
Confidence 34689999999999988774421 11112222 3457899986655443 689999999
Q ss_pred ccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 227 iG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
+|. ..-.|=-.+..+.+.-||..||+|||.+||+..|..|++-... +.-+|.|+||||+.. ++-+++++ .++
T Consensus 135 VGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~--aeSr~Fa~----eTg 208 (321)
T COG1441 135 VGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTR--AESRAFAR----ETG 208 (321)
T ss_pred eeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCCh--HHHHHHHH----hcC
Confidence 995 3345555677777888999999999999999999999998763 333457999999853 34455664 799
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
|.||.||++... ||.-- ....+..|++||+.+| +..+.+.++.|+++|+..+++|.+||++|+...+.+|+-+
T Consensus 209 IAIAWDEs~rea-dF~~e-~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 209 IAIAWDESLREA-DFAFE-AEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred eeEeecchhccc-ccccc-cCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 999999999874 44221 2346889999999999 9999999999999999999999999999999999888764
No 38
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.88 E-value=1.2e-21 Score=166.21 Aligned_cols=115 Identities=26% Similarity=0.463 Sum_probs=98.8
Q ss_pred EEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCCHHH
Q 014285 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTLNF 146 (427)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~~~~ 146 (427)
.+++++.+++|++ ||++|.++.+.++.++|||+|++|++||||+.+.+. +. ......+.+ +.|.+.|+++.+++.
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~--~~~~~~~~~~l~~~l~g~~~~~~~~ 77 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TA--ETVASALEDYLAPLLIGQDPDDIED 77 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SH--HHHHHHHHHTHHHHHTTSBTTGHHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hh--HHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678889999999 999999999999999999999999999999998654 22 122223344 789999999999999
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg 188 (427)
+++.+++...+ .+.+++|||+||||+.||..|+|||+|||
T Consensus 78 ~~~~~~~~~~~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 78 IWQELYRLIKG--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHhccc--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999876554 46789999999999999999999999997
No 39
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.85 E-value=4.5e-21 Score=161.13 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=95.6
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN 388 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~ 388 (427)
||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++|++++++|++++++++.+.|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999888887
Q ss_pred CCcccccCCCC---CceeeeCcEEecCC-CCCcccc
Q 014285 389 TPFLLSEDPFV---GGCEVSGAIYNFTN-ARGQGGF 420 (427)
Q Consensus 389 ~p~~~~~~~~~---~~~~~~~G~i~~p~-~pGlGve 420 (427)
|++. .+++. +++. +||++.+|+ +||||||
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 4432 45555 3556 999999999 9999997
No 40
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=9e-18 Score=164.06 Aligned_cols=285 Identities=25% Similarity=0.301 Sum_probs=198.8
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC---------------CCc-chHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHHC
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL---------------VTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARIL 155 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~---------------~s~-~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~ 155 (427)
.++|-|+|.|++|..|++-+...-. |.+ ....++..+++ +.|.|+|.+..++..+.+.|...-
T Consensus 18 npTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~LiG~da~dQ~~ID~~lielD 97 (423)
T COG0148 18 NPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALIGLDATDQALIDSLLIELD 97 (423)
T ss_pred CceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 5789999999999988875432211 111 12234555554 789999999999988888776531
Q ss_pred ----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC-Cc--eeeeeeec------------------C--CCHHHH
Q 014285 156 ----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NS--LSTAITIP------------------A--VSPAEA 208 (427)
Q Consensus 156 ----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~-~~--ip~~~~i~------------------~--~~~~~~ 208 (427)
..+.-+++.-|+.||.--+.|..+|+|||+++||.+ .. +|+...+. . .+..+.
T Consensus 98 GT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~NvinGG~HA~n~~d~QEFmI~p~ga~sf~ea 177 (423)
T COG0148 98 GTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEA 177 (423)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeecccccCCCCccceeEEEeecChHHHHHH
Confidence 112346789999999999999999999999999974 33 44322221 1 122222
Q ss_pred HHH-------HHHH-hhcCCcEEEEecc---CCch---hhHHH-HHHHHHhC----CCcEEEEeCC-------C------
Q 014285 209 SEL-------ASKY-CKLGFSTLKLNVG---RNIT---ADFDV-LQAIHAVH----PHCSFILDAN-------E------ 256 (427)
Q Consensus 209 ~~~-------~~~~-~~~Gf~~iKlKiG---~~~~---~d~~~-l~~ir~~~----~~~~L~vDAN-------~------ 256 (427)
.+. ..++ .+.|..+-+=.-| ++++ +-++. ++++++++ .++.|.+|+- +
T Consensus 178 lr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~~Y~~~~ 257 (423)
T COG0148 178 LRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDGKYVLEG 257 (423)
T ss_pred HHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCCeeeecC
Confidence 111 1111 2334444311112 2333 33443 35677764 3589999983 2
Q ss_pred -CCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEe
Q 014285 257 -GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 257 -~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++.+|-++++..| ++|.+ .+||+|+.++||+++++|.+.+ ...+.|..|. -++++..+++-++.+..+.+.+
T Consensus 258 ~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~--g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLI 333 (423)
T COG0148 258 ESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRL--GDKVQIVGDDLFVTNPKRLKKGIEKGAANAILI 333 (423)
T ss_pred cccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhh--CCeEEEECCcceecCHHHHHHHHHhccCceEEE
Confidence 45777888887766 67875 5999999999999999999732 1237788887 5678888999999999999999
Q ss_pred CCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcc
Q 014285 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~ 383 (427)
||.++| +|++++.+++|+++|+..++++.. |+. -...+|+|.+++++.
T Consensus 334 K~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETe--D~tIAdLAVa~~agq 383 (423)
T COG0148 334 KPNQIGTLTETLEAINLAKDAGYTAVISHRSGETE--DTTIADLAVATNAGQ 383 (423)
T ss_pred echhcccHHHHHHHHHHHHHCCCeEEEecCCCCcc--cchHHHHHHHhCCCe
Confidence 999999 999999999999999999998754 432 235779998887653
No 41
>PRK08350 hypothetical protein; Provisional
Probab=99.80 E-value=8.9e-18 Score=162.74 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=190.6
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC---CCCcchHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHHCCC-----ChhhhH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP---LVTGDQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARILPG-----SEFASV 163 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~---~~s~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g-----~~~~~a 163 (427)
.++|-|+|+|++| .|.+-+..-. .|......++..+++ +.|.|+|.++.+...+.+.|.+. .| ...+++
T Consensus 18 nPTVEveV~~~~g-~gra~vPSD~d~~ry~~gV~~AV~nVn~~Iap~LiG~d~~dQ~~ID~~miel-DGT~nKs~lGaNA 95 (341)
T PRK08350 18 KYSVEVDVITDSG-FGRFAAPIDENPSLYIAEAHRAVSEVDEIIGPELIGFDASEQELIDSYLWEI-DGTEDFSHIGANT 95 (341)
T ss_pred CceEEEEEEECCc-EEEEEecCCCCcccccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCCccccccCchh
Confidence 5788999999998 7776665411 122223345566655 88999999999999888888652 22 233678
Q ss_pred HHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeee--eeecCCCHHHHH--HHHHHHhhcCCcEEEEeccCCchhhHHHH
Q 014285 164 RAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTA--ITIPAVSPAEAS--ELASKYCKLGFSTLKLNVGRNITADFDVL 238 (427)
Q Consensus 164 ~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~--~~i~~~~~~~~~--~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l 238 (427)
..|+.||..-+.|...|+|||++|||. ...+|+. .-+..++.+.|. .++-+. .+=|+.+|--+-.+.++-++.+
T Consensus 96 iLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~ea~~~-~ev~~~lk~il~~~~eeaL~ll 174 (341)
T PRK08350 96 ALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRDLMEI-TDVVDAVNKILENSKEVSLEGL 174 (341)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchHhhhh-HHHHHHHHHHHhhChHHHHHHH
Confidence 999999999999999999999999884 3345442 223222322221 000000 1112222211111445556654
Q ss_pred -HHHHHhC----CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCC
Q 014285 239 -QAIHAVH----PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC 313 (427)
Q Consensus 239 -~~ir~~~----~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~ 313 (427)
++|.++| .|+.+.+|+...+|.+|-+ +.+++|.+ .+|| |+..+ +++++|++. ...+.|..|.-.
T Consensus 175 ~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE-p~~E~--~gw~~lt~~---g~~iqiVGDDLf 243 (341)
T PRK08350 175 SKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK-PIGDE--ELFLELIAG---THGVFIDGEYLF 243 (341)
T ss_pred HHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-cCCcc--hHHHHHHhc---CCceEEEccccc
Confidence 6777764 2699999998668988866 77788986 5999 99965 999999972 346889998866
Q ss_pred CCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcce
Q 014285 314 RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKY 384 (427)
Q Consensus 314 ~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~ 384 (427)
.|-... +.++++.+.+||.++| +|++++.+++|+++|+.+++++.. |+ .-...+|||.+++++..
T Consensus 244 vTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGET--eD~~IAdLaVa~~agqI 310 (341)
T PRK08350 244 RTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYES--ADEALPHLAVGLRCPAM 310 (341)
T ss_pred ccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCC--cchhHHHHHHHhCCCcc
Confidence 554333 7889999999999999 999999999999999999998755 44 34568899999887643
No 42
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.67 E-value=2e-16 Score=120.64 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=61.0
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec
Q 014285 237 VLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 237 ~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d 310 (427)
||++||+. ||++.|++|+|++||+++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999995 99999999999999999999999999996 39999999999999999986 799999987
No 43
>PTZ00378 hypothetical protein; Provisional
Probab=99.67 E-value=6.8e-14 Score=142.84 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=195.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCce-----EEEEeecCCC------C-Cc-chHHHHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV-----GWGEVAVVPL------V-TG-DQTKALVKVRE 131 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~-----G~GE~~~~~~------~-s~-~~~~~~~~~~~ 131 (427)
+.|++|..+.+- .+. ..++|-|+|++++|.. -.||+.-++. | .+ ....++. +.
T Consensus 49 ~~I~~i~areIl--------DSr----GnPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~--~~ 114 (518)
T PTZ00378 49 DEIRALVHNEVL--------SPA----GETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ--NS 114 (518)
T ss_pred CeeeEEEEEEEE--------cCC----CCeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--hh
Confidence 457888765531 122 2567888899988843 0125543321 2 11 1222222 45
Q ss_pred HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC--------CCceeeeee
Q 014285 132 ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA--------SNSLSTAIT 199 (427)
Q Consensus 132 ~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~--------~~~ip~~~~ 199 (427)
+.|.|+|.++.+...+.+.|.+.. ......++..|+.||..-+.|+..++|||++|++. ...+|+...
T Consensus 115 i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~ 194 (518)
T PTZ00378 115 YFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCI 194 (518)
T ss_pred hHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccce
Confidence 899999999999888888876532 11234688999999999999999999999999873 123443210
Q ss_pred --------------------ecC----CCHHHHHHHH-HHH--hhcCCcEEEEecc-------C---CchhhHHHH-HHH
Q 014285 200 --------------------IPA----VSPAEASELA-SKY--CKLGFSTLKLNVG-------R---NITADFDVL-QAI 241 (427)
Q Consensus 200 --------------------i~~----~~~~~~~~~~-~~~--~~~Gf~~iKlKiG-------~---~~~~d~~~l-~~i 241 (427)
+|. .+..+..+.. +-+ +..|+. .-+| + +.++-++++ ++|
T Consensus 195 NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~eAi 271 (518)
T PTZ00378 195 TFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATEAL 271 (518)
T ss_pred EeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 122 2333332221 111 112322 1122 1 123344443 566
Q ss_pred HHhC--C--CcEEEEeCCC----------------------------------CCCHHHHHHHHHHh-hhCC--CCCceE
Q 014285 242 HAVH--P--HCSFILDANE----------------------------------GYTSEEAVEVLGKL-NDMG--VIPVLF 280 (427)
Q Consensus 242 r~~~--~--~~~L~vDAN~----------------------------------~~s~~~A~~~l~~L-~~~~--l~~~~i 280 (427)
++++ | ++.|.+|+-. .+|.+|.+++.+.| ++|. + .+|
T Consensus 272 ~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--vsI 349 (518)
T PTZ00378 272 RAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--VYV 349 (518)
T ss_pred HHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--EEE
Confidence 6654 3 5777777521 14577888877665 6775 4 589
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCC-C-CHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESC-R-SLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~-~-~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|+|+..+||+++++|++.+ ...+.|..|.-. + +...+++.++.+.++.+.+||+++| ++++++.+++|+++|..+
T Consensus 350 EDp~~E~D~~gw~~lt~~l--G~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~~~ 427 (518)
T PTZ00378 350 EDTHCDEDTFGLQRLQAAL--GDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEGRA 427 (518)
T ss_pred ecCCCchHHHHHHHHHHHh--CCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCCcE
Confidence 9999999999999999743 245788888744 4 4888999999999999999999999 999999999999999999
Q ss_pred E---EcccCchhHHHHHHHHHHhhcCCc
Q 014285 358 M---IDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 358 ~---~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
+ +++. || .-..++|||.+++..
T Consensus 428 v~v~vShR--SG-eD~~IAdLAVa~ga~ 452 (518)
T PTZ00378 428 VTVLVQTL--AG-NAATAAHLAVAMGAR 452 (518)
T ss_pred EccccCCC--cC-CccHHHHHHHHcCCC
Confidence 7 6654 33 456788999988764
No 44
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5e-13 Score=127.21 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=169.4
Q ss_pred HHHHHHH-HhhHhcCC--CCCCHHHHHHHHHHHCCC-----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC---CCC-
Q 014285 125 ALVKVRE-ACQFLRQS--PPTTLNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGG---ASN- 192 (427)
Q Consensus 125 ~~~~~~~-~~~~l~g~--~~~~~~~~~~~l~~~~~g-----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg---~~~- 192 (427)
++..+++ +.|.|++. ++.+...+.+.|... .| ...++++.|+.+|+--+-|-..|+|||+.+.. ...
T Consensus 65 aV~niN~~i~pali~~~~dv~~Q~~iD~~mi~L-DGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~ 143 (433)
T KOG2670|consen 65 AVGNINNTIAPALIKKNLDVTDQKAIDNFMIEL-DGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQP 143 (433)
T ss_pred HHHHHHHHHHHHHHccCCChhhHHHHHHHHHhc-cCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCc
Confidence 4444544 68999877 777777777777542 22 22357899999999999999999999997643 222
Q ss_pred -ceeeee--eec--------------------CCCHHHHHHH-------HHHHhhcCCcEEEEecc------CCc---hh
Q 014285 193 -SLSTAI--TIP--------------------AVSPAEASEL-------ASKYCKLGFSTLKLNVG------RNI---TA 233 (427)
Q Consensus 193 -~ip~~~--~i~--------------------~~~~~~~~~~-------~~~~~~~Gf~~iKlKiG------~~~---~~ 233 (427)
-+|+.+ .+. ..++++..+. .+..++.-|-.---.+| +++ ++
T Consensus 144 ~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E 223 (433)
T KOG2670|consen 144 YVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEE 223 (433)
T ss_pred eEecccceeeecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHH
Confidence 234322 111 1122222111 11111111111112222 122 34
Q ss_pred hHHHH-HHHHHhC--CCcEEEEeCCC----------------------CCCHHHHHHHHHH-hhhCCCCCceEeCCCCCC
Q 014285 234 DFDVL-QAIHAVH--PHCSFILDANE----------------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRD 287 (427)
Q Consensus 234 d~~~l-~~ir~~~--~~~~L~vDAN~----------------------~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~ 287 (427)
-++++ .+|++.+ .++.+.+|... .+|.++..++.+. +.+|.+ ..||+|+.++
T Consensus 224 ~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqd 301 (433)
T KOG2670|consen 224 ALDLIKEAINKAGYTGKVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQD 301 (433)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchh
Confidence 45554 5666664 47889888731 1366666555544 577875 6999999999
Q ss_pred ChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-c
Q 014285 288 DWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-E 364 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-e 364 (427)
||+.+..+.. .+++.|..|. .++++..++++++..+++.+.+|+.++| +|++.+.+.+|+++|.++|++... |
T Consensus 302 Dw~~w~~~~~----~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGE 377 (433)
T KOG2670|consen 302 DWEAWSKFFK----EVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGE 377 (433)
T ss_pred hHHHHHHHhh----ccceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCC
Confidence 9999999875 5889999887 7788999999999999999999999999 999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhcCCcc
Q 014285 365 TRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 365 s~ig~~a~~hlaaal~~~~ 383 (427)
+ .-..+++|..++.++.
T Consensus 378 T--eDtFIaDL~VGl~tgq 394 (433)
T KOG2670|consen 378 T--EDTFIADLVVGLGTGQ 394 (433)
T ss_pred c--ccchHHHhhhhhccce
Confidence 3 2235677887776653
No 45
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=99.21 E-value=1.6e-10 Score=112.61 Aligned_cols=166 Identities=21% Similarity=0.346 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHH-hhcCCcEEEEeccCCchhhHHHHHHHHHhC--CCcEEEEeCCC-------CCCHHHHHHHHHHh-
Q 014285 202 AVSPAEASELASKY-CKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE-------GYTSEEAVEVLGKL- 270 (427)
Q Consensus 202 ~~~~~~~~~~~~~~-~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~--~~~~L~vDAN~-------~~s~~~A~~~l~~L- 270 (427)
+.++++..+.+.+. .+.||.. ++++|.|+... +.+ .+-.-.++... ..|.+|-+++...|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 34666665554433 3467776 66666543210 112 11222333222 36889988877765
Q ss_pred hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHH
Q 014285 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (427)
Q Consensus 271 ~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~ 348 (427)
++|.+ .+||+|+.++||+++++|++.+ .-.+-|..|. .++++..+++.++.++++.+.+|++++| +|++++.++
T Consensus 147 ~~YPI--vsIEDpf~edD~e~w~~lt~~~--g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 147 KKYPI--VSIEDPFDEDDWEGWAKLTKRL--GDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp HHS-E--EEEESSS-TT-HHHHHHHHHHH--TTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred HhcCe--EEEEccccccchHHHHHHHHhh--hcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 77875 6999999999999999999743 1238899887 6677888999999999999999999999 999999999
Q ss_pred HHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 349 ATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 349 ~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
+|+++|..+++++.. |+ --...+|||.++++.
T Consensus 223 ~a~~~g~~~vvS~rsgEt--eD~~iadLaVg~~a~ 255 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSGET--EDTFIADLAVGLGAG 255 (295)
T ss_dssp HHHHTT-EEEEE--SS----S--HHHHHHHHTT-S
T ss_pred HHHHCCceeeccCCCCCc--CchhHHHHHhccCcC
Confidence 999999999998754 43 234688999998775
No 46
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.20 E-value=9.1e-10 Score=103.99 Aligned_cols=281 Identities=17% Similarity=0.226 Sum_probs=183.2
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCCCCc---chH-----HHHHHHH-HHhhHhcCCCCCCH---HHHHHHHHHHCCCCh-
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPLVTG---DQT-----KALVKVR-EACQFLRQSPPTTL---NFALDEIARILPGSE- 159 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~~s~---~~~-----~~~~~~~-~~~~~l~g~~~~~~---~~~~~~l~~~~~g~~- 159 (427)
.+.+-|.+..++|.+-||.|+... ||+ ..+ .....++ .+.|.|+|+|.... .+..+.+ ..++.
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQ-YSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l---~d~~~L 125 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQ-YSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKL---IDGNLL 125 (410)
T ss_pred cceeeEEEEEecCceeeccceeeE-ecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhh---ccCCcc
Confidence 345667777889999999998653 333 111 1111222 36799999876433 2223333 23332
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCChhh----hhCCC--CCceeeeeeecCC---CHHHHHHHHHHHhhcC-CcEEEEeccC
Q 014285 160 FASVRAGVEMALIDAVANSIDIPLWR----LFGGA--SNSLSTAITIPAV---SPAEASELASKYCKLG-FSTLKLNVGR 229 (427)
Q Consensus 160 ~~~a~~aie~Al~Dl~gk~~g~Pl~~----Llgg~--~~~ip~~~~i~~~---~~~~~~~~~~~~~~~G-f~~iKlKiG~ 229 (427)
-.+++.|+..||.|+.+...+.---+ -|+-. .+++|++...+-. ..+.|.-.....+-.| |+.+ =|+|.
T Consensus 126 htAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsv-e~~G~ 204 (410)
T COG3799 126 HTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSV-EELGF 204 (410)
T ss_pred hHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhH-HHhCC
Confidence 24679999999999998776644333 33333 3578877654321 2233321111111111 1111 12333
Q ss_pred CchhhHHHHH----HHHHh---CCCcEEEEeCCCC------CCHHHHHHHHHHhhh--CCCCCceEeCCCCCC----Chh
Q 014285 230 NITADFDVLQ----AIHAV---HPHCSFILDANEG------YTSEEAVEVLGKLND--MGVIPVLFEQPVHRD----DWS 290 (427)
Q Consensus 230 ~~~~d~~~l~----~ir~~---~~~~~L~vDAN~~------~s~~~A~~~l~~L~~--~~l~~~~iEqP~~~~----d~~ 290 (427)
|-+.=.+-++ .++.. +..-.|-+|..|. +++....+++..|++ -++ +.+||-|...+ +++
T Consensus 205 dG~~l~Eyv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~ 283 (410)
T COG3799 205 DGEKLREYVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIR 283 (410)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHH
Confidence 3222233332 23333 2346899999875 577777788888864 234 35999999754 567
Q ss_pred hHHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc-cCchhH
Q 014285 291 GLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRL 367 (427)
Q Consensus 291 ~~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~i 367 (427)
.|+++++.+. .-+++.|..||.+.+..|+....++.+++.+|+|..-+| |.+..+.+.+|..+.+...+++ ..|+.+
T Consensus 284 ~~a~i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdv 363 (410)
T COG3799 284 LLAAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDV 363 (410)
T ss_pred HHHHHHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccch
Confidence 7777765433 357899999999999999999999999999999999999 9999999999999999999876 449999
Q ss_pred HHHHHHHHHhhc
Q 014285 368 ATGFALHLAAGL 379 (427)
Q Consensus 368 g~~a~~hlaaal 379 (427)
+..+++|++.+.
T Consensus 364 SAr~cvHValAt 375 (410)
T COG3799 364 SARTCVHVALAT 375 (410)
T ss_pred hhhhhhhhhhhh
Confidence 999999988764
No 47
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.20 E-value=3.6e-10 Score=103.16 Aligned_cols=159 Identities=16% Similarity=0.299 Sum_probs=109.4
Q ss_pred CcEEEEeccCCchhhHHHHHHHH----HhC-C--CcEEEEeCCCCC------CHHHHHHHHHHhhh----CCCCCceEeC
Q 014285 220 FSTLKLNVGRNITADFDVLQAIH----AVH-P--HCSFILDANEGY------TSEEAVEVLGKLND----MGVIPVLFEQ 282 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir----~~~-~--~~~L~vDAN~~~------s~~~A~~~l~~L~~----~~l~~~~iEq 282 (427)
|..+. |+|.+-+.=.+-++-++ +++ + .-.|.+|..|.. +++...+|+.+|++ |.+ .||-
T Consensus 36 innve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~L---~iEg 111 (248)
T PF07476_consen 36 INNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFKL---RIEG 111 (248)
T ss_dssp ---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS-E---EEE-
T ss_pred hhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCee---eeeC
Confidence 78888 99986555444444443 333 2 468999998753 57777788888764 544 8999
Q ss_pred CCCCC----ChhhHHHHHHhhcc-ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCc
Q 014285 283 PVHRD----DWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356 (427)
Q Consensus 283 P~~~~----d~~~~~~L~~~~r~-~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~ 356 (427)
|+..+ |++.|++|++.+++ .+++.|.+||-+.+++|++...++++.|++|+|..-+| +..+.+.+-+|+++|++
T Consensus 112 P~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvg 191 (248)
T PF07476_consen 112 PMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGVG 191 (248)
T ss_dssp SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-E
T ss_pred CcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCCc
Confidence 99865 56778888876653 46889999999999999999999999999999999998 99999999999999999
Q ss_pred EEEcc-cCchhHHHHHHHHHHhhcCCc
Q 014285 357 LMIDG-MIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 357 ~~~~s-~~es~ig~~a~~hlaaal~~~ 382 (427)
.+.++ ..|+..+.-+++|+|.|.+..
T Consensus 192 aY~GGtCNETd~SArv~~hvalAt~p~ 218 (248)
T PF07476_consen 192 AYLGGTCNETDRSARVCVHVALATRPD 218 (248)
T ss_dssp EEE---TTS-HHHHHHHHHHHHHCT-S
T ss_pred eeecccccccchhHHHHHHHHHhcCHH
Confidence 99987 449999999999999886543
No 48
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.04 E-value=7e-09 Score=98.05 Aligned_cols=143 Identities=22% Similarity=0.336 Sum_probs=119.2
Q ss_pred hhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCc
Q 014285 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHC 248 (427)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~ 248 (427)
.+++......|+..++...+++++.+.++.+.+.||..|+++.|. +++...+.++++|+..+ +
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~ 124 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-I 124 (231)
T ss_pred HhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-C
Confidence 445555677888888888899999988888888899999999874 34556788899988544 7
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHhhhCCCCCceE-------eC-CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHH
Q 014285 249 SFILDANEGYTSE-EAVEVLGKLNDMGVIPVLF-------EQ-PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (427)
Q Consensus 249 ~L~vDAN~~~s~~-~A~~~l~~L~~~~l~~~~i-------Eq-P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~ 319 (427)
.+.++.|.+|+.+ ++.++++.|++.++. +| +| +..+.+++.++++++ ..++||.++..+.+..++
T Consensus 125 ~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 125 PVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHHH
Confidence 7899999999876 899999999999875 78 76 776778888888875 688999999999999999
Q ss_pred HHHHHcCCCcEEEeC
Q 014285 320 QKVMQENLASVVNIK 334 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk 334 (427)
.++++.+.+|.+++=
T Consensus 199 ~~~l~~~gad~V~ig 213 (231)
T cd02801 199 LRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999998778988764
No 49
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.99 E-value=7.2e-09 Score=103.79 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCCcEEEEeccC------------Cchhh-------------HHHHHHHHH-hCCCcEEEEeCC------
Q 014285 208 ASELASKYCKLGFSTLKLNVGR------------NITAD-------------FDVLQAIHA-VHPHCSFILDAN------ 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~------------~~~~d-------------~~~l~~ir~-~~~~~~L~vDAN------ 255 (427)
+.+.++.+++.||..|+++.|. +...| .+.+++||+ +++++.|.+|.|
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 4455777788999999999852 22233 789999998 578989999855
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-----------CCC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-----------QPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-----------qP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll 323 (427)
++|+.++++++++.|+++++ .||| .|+ +..+++.++++++ .+++||+.++.+.+..++++++
T Consensus 236 ~g~~~~e~~~ia~~Le~~gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~l 309 (336)
T cd02932 236 GGWDLEDSVELAKALKELGV--DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAIL 309 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHH
Confidence 89999999999999999987 4999 466 3345566677765 6789999999999999999999
Q ss_pred HcCCCcEEEe
Q 014285 324 QENLASVVNI 333 (427)
Q Consensus 324 ~~~a~~~i~l 333 (427)
+.+.+|+|.+
T Consensus 310 ~~g~aD~V~~ 319 (336)
T cd02932 310 ESGRADLVAL 319 (336)
T ss_pred HcCCCCeehh
Confidence 9998998765
No 50
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.66 E-value=5.3e-07 Score=90.42 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCCcEEEEeccC---------------------C----chhhHHHHHHHHH-hCCCcEEEEeCC------
Q 014285 208 ASELASKYCKLGFSTLKLNVGR---------------------N----ITADFDVLQAIHA-VHPHCSFILDAN------ 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~---------------------~----~~~d~~~l~~ir~-~~~~~~L~vDAN------ 255 (427)
..+.++..++.||..|-+..|. + .+-.++.|++||+ +++++.|.+|.|
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 3455667778999999998762 1 1224678999998 578999999998
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-------CCCCC---C---------ChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHR---D---------DWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~~---~---------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
++|+.++++++++.|++.++ .||| +|... . .++..++++ +.+++||+.++.+.++
T Consensus 231 ~g~~~eea~~ia~~Le~~Gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t~ 304 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGV--DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRTR 304 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCCH
Confidence 68999999999999999987 4999 66632 1 123334554 3689999999999999
Q ss_pred HHHHHHHHcCCCcEEEe
Q 014285 317 NDVQKVMQENLASVVNI 333 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~l 333 (427)
++++++++.+.+|+|.+
T Consensus 305 ~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 305 AAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHcCCCCeeee
Confidence 99999999999999876
No 51
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.58 E-value=1.1e-06 Score=87.64 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=93.1
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCCcEEEEeCC------C
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPHCSFILDAN------E 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~~~L~vDAN------~ 256 (427)
.+.++.+.+.||..|+++.+. +... ..+.+++||+ .++++.|.|+.| +
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~ 223 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPG 223 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCC
Confidence 445677788999999999862 1112 2678999998 478888888877 4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe-------CCCC---------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHH
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~---------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~ 320 (427)
+|+.++++++++.|+++++. ||+ +|.. ..+++..+++++ .+++||+..+.+.+..+++
T Consensus 224 g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~~~a~ 297 (327)
T cd02803 224 GLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK----AVKIPVIAVGGIRDPEVAE 297 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH----HCCCCEEEeCCCCCHHHHH
Confidence 58999999999999999974 884 6654 233455555654 6789999999999999999
Q ss_pred HHHHcCCCcEEEe
Q 014285 321 KVMQENLASVVNI 333 (427)
Q Consensus 321 ~ll~~~a~~~i~l 333 (427)
++++.+.+|.|.+
T Consensus 298 ~~l~~g~aD~V~i 310 (327)
T cd02803 298 EILAEGKADLVAL 310 (327)
T ss_pred HHHHCCCCCeeee
Confidence 9999988998775
No 52
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.49 E-value=2e-06 Score=86.73 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcCCcEEEEeccC------------C-------------chhhHHHHHHHHH-hCCCcEEE-----EeCC-
Q 014285 208 ASELASKYCKLGFSTLKLNVGR------------N-------------ITADFDVLQAIHA-VHPHCSFI-----LDAN- 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~------------~-------------~~~d~~~l~~ir~-~~~~~~L~-----vDAN- 255 (427)
+.+.|+.+++.||..|++..+. + .+..++.+++||+ +++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 3445666778999999998731 1 2345778999999 47776554 4654
Q ss_pred CCCCHHHHHHHHHHhhhCCCC-----CceEeCCCCCCC--------hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVI-----PVLFEQPVHRDD--------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP~~~~d--------~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
++|+.++++++++.|+++++. ..|.|+|++..+ .+.+++++ +.+++||+..+.+.++.+++++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 678999999999999998742 125688876431 22334554 3789999999999999999999
Q ss_pred HHcCCCcEEEe
Q 014285 323 MQENLASVVNI 333 (427)
Q Consensus 323 l~~~a~~~i~l 333 (427)
++.+.+|++.+
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999998765
No 53
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=98.27 E-value=2.8e-05 Score=67.13 Aligned_cols=95 Identities=26% Similarity=0.233 Sum_probs=66.5
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.+++-|+|.+++|..|.+-+..... |.+ ....++..+++ +.|.|+|.++.+...+.+.|.+.
T Consensus 16 ~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~l 95 (132)
T PF03952_consen 16 NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGLDPTDQEEIDQILIEL 95 (132)
T ss_dssp -EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHH
T ss_pred CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhcchhhHHHhCccceec
Confidence 5789999999999888887754311 111 12345555554 78999999999999888887654
Q ss_pred C----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhh
Q 014285 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187 (427)
Q Consensus 155 ~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll 187 (427)
- ......++..|+.+|++-+.|+..|+|||++|
T Consensus 96 DgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 96 DGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred cCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 1 11233578999999999999999999999975
No 54
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.29 E-value=0.0032 Score=54.85 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=60.4
Q ss_pred eeeEEEEEEEEcCCceEEEEeecCC--CCCcch-----HHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHCCCCh-hhh
Q 014285 92 NVENVAIRVELSNGCVGWGEVAVVP--LVTGDQ-----TKALVKV-REACQFLRQSPPTTLNFALDEIARILPGSE-FAS 162 (427)
Q Consensus 92 ~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~-----~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~ 162 (427)
..+.+.|.+..+||.+.||.|+..- +.++.. .+.+..+ ..+.|.|.|++.......-+.+.....|.. -.+
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtA 128 (159)
T PF05034_consen 49 AGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTA 128 (159)
T ss_dssp EEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhH
Confidence 3567889999999999999998752 222211 2233333 348899999999988888877776644432 256
Q ss_pred HHHHHHHHHHHHHHhhCCCChhh
Q 014285 163 VRAGVEMALIDAVANSIDIPLWR 185 (427)
Q Consensus 163 a~~aie~Al~Dl~gk~~g~Pl~~ 185 (427)
++.||.+||+|+.++..+.-..+
T Consensus 129 iRYGvsQALL~A~A~a~~~tmae 151 (159)
T PF05034_consen 129 IRYGVSQALLDAAAKAQRTTMAE 151 (159)
T ss_dssp HHHHHHHHHHHHHHHHCTS-HHH
T ss_pred HHHhHHHHHHHHHHHHcCCcHHH
Confidence 89999999999999998654443
No 55
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.17 E-value=0.011 Score=58.65 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=102.3
Q ss_pred CceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC-CCcEEEEeC
Q 014285 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-PHCSFILDA 254 (427)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~-~~~~L~vDA 254 (427)
...|+...+...+++++.+.++...+.||..|-+..|. +++.-.+.++++|+.. +++.+.|=-
T Consensus 61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 61 SGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 34577778888899999888888888999999998873 1233345677778753 344444444
Q ss_pred CCCCC-HHHHHHHHHHhhhCCCC-----CceEeCCCCC--CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 255 NEGYT-SEEAVEVLGKLNDMGVI-----PVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 255 N~~~s-~~~A~~~l~~L~~~~l~-----~~~iEqP~~~--~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
.-+|+ .+++.++++.+++.|+. ...-+|.... -+|+..+++.+ ..++||...=.+.+..++.++++..
T Consensus 141 R~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 141 RLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred ECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhcc
Confidence 34564 45678999999886643 2223443322 26877888875 6789999988999999999999888
Q ss_pred CCcEEEeCCCCcc
Q 014285 327 LASVVNIKLAKFG 339 (427)
Q Consensus 327 a~~~i~lk~~~~G 339 (427)
.+|.|.+==..+|
T Consensus 217 g~DgVmiGRg~l~ 229 (312)
T PRK10550 217 GCDAVMIGRGALN 229 (312)
T ss_pred CCCEEEEcHHhHh
Confidence 8999887554444
No 56
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.05 E-value=0.018 Score=57.38 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=98.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC----------------chhhHHHHHHHHHhCCCcEEEEeCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCSFILDANEG 257 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~----------------~~~d~~~l~~ir~~~~~~~L~vDAN~~ 257 (427)
.|+...+...+++++.+.++...+.||..|-+..|.. ++.-.+.++++|+.. ++.+.+=-+.+
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G 143 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTG 143 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEcc
Confidence 4555667778999998888777778999999998832 333455667777642 22233322345
Q ss_pred CCH--HHHHHHHHHhhhCCCCCceE-------eCCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 258 YTS--EEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 258 ~s~--~~A~~~l~~L~~~~l~~~~i-------EqP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
|+. .++.++++.+++.|+. +| +|... ..+|+..+++++ .+++||...=.+.+..+++++++...
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccC
Confidence 653 3678899999988864 55 33332 246777777765 68899999989999999999998777
Q ss_pred CcEEEeCCCCcc
Q 014285 328 ASVVNIKLAKFG 339 (427)
Q Consensus 328 ~~~i~lk~~~~G 339 (427)
+|.+++=-..+|
T Consensus 218 adgVmiGR~~l~ 229 (321)
T PRK10415 218 ADALMIGRAAQG 229 (321)
T ss_pred CCEEEEChHhhc
Confidence 999988554444
No 57
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.79 E-value=0.016 Score=57.54 Aligned_cols=143 Identities=23% Similarity=0.366 Sum_probs=94.6
Q ss_pred hhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCc
Q 014285 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHC 248 (427)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~ 248 (427)
.++......-|+...+...+++.+.+.++...+.||..|-+..|- +++.-.+.|+++++..+ +
T Consensus 45 ~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~ 123 (309)
T PF01207_consen 45 RLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-I 123 (309)
T ss_dssp HHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-S
T ss_pred ecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-c
Confidence 444444445677778888899999888887766799999999982 34445667788887543 4
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHhhhCCCCCceE-------eCCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHH
Q 014285 249 SFILDANEGYT--SEEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLND 318 (427)
Q Consensus 249 ~L~vDAN~~~s--~~~A~~~l~~L~~~~l~~~~i-------EqP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~ 318 (427)
.+.|-.--+|+ .++.+++++.|++.|+. +| +|--. +-||+.++++++ ..++||.+.=.+.+..|
T Consensus 124 pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d 197 (309)
T PF01207_consen 124 PVSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPED 197 (309)
T ss_dssp EEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHH
T ss_pred ceEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHH
Confidence 55555555555 78889999999998864 54 34433 568999999986 67899999999999999
Q ss_pred HHHHHHcCCCcEEEeC
Q 014285 319 VQKVMQENLASVVNIK 334 (427)
Q Consensus 319 ~~~ll~~~a~~~i~lk 334 (427)
+.++++.-.+|.+.+=
T Consensus 198 ~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 198 AERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHCCCH-SSEEEES
T ss_pred HHHHHHhcCCcEEEEc
Confidence 9999987678888763
No 58
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.70 E-value=0.049 Score=55.63 Aligned_cols=122 Identities=13% Similarity=0.187 Sum_probs=80.5
Q ss_pred HHHHHHhhcCCcEEEEec---cC-------------------Cchh----hHHHHHHHHH-hCCC--cEEEEeC------
Q 014285 210 ELASKYCKLGFSTLKLNV---GR-------------------NITA----DFDVLQAIHA-VHPH--CSFILDA------ 254 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKi---G~-------------------~~~~----d~~~l~~ir~-~~~~--~~L~vDA------ 254 (427)
+.|+...++||..|.+.. |- +++. -++.+++||+ ++++ +.+++.+
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 445666789999999997 41 1111 2567899998 4666 3444432
Q ss_pred ------------CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCC---CCCC-hh-hHHHHHHhhccccCCeEEec
Q 014285 255 ------------NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPV---HRDD-WS-GLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 255 ------------N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~---~~~d-~~-~~~~L~~~~r~~~~iPIa~d 310 (427)
+++++.++++++++.|++.++. |++ ++. +... -. .+..+++.+++..++||.+-
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~ 311 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMA 311 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEe
Confidence 4578999999999999987764 553 111 0000 00 01122222334678999988
Q ss_pred CCCCCHHHHHHHHHcCCCcEEEe
Q 014285 311 ESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 311 E~~~~~~~~~~ll~~~a~~~i~l 333 (427)
=.+.++.+..++++.+.+|.|.+
T Consensus 312 G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 312 GRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred CCCCCHHHHHHHHHcCCCCeeee
Confidence 88899999999999998998765
No 59
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.061 Score=53.65 Aligned_cols=141 Identities=21% Similarity=0.323 Sum_probs=105.9
Q ss_pred CceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCcEEEEeCC
Q 014285 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDAN 255 (427)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~~L~vDAN 255 (427)
...|+...+...+|+.+.+.++...+.||..|-+..|. +++.=.+.|+++++..+++.+.|=--
T Consensus 65 ~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiR 144 (323)
T COG0042 65 EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIR 144 (323)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 34566677888899888888888888999999999983 23445667888888654677777777
Q ss_pred CCCCHHH--HHHHHHHhhhCCCCCceE---------eCCCCCCChhhHHHHHHhhccccC-CeEEecCCCCCHHHHHHHH
Q 014285 256 EGYTSEE--AVEVLGKLNDMGVIPVLF---------EQPVHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 256 ~~~s~~~--A~~~l~~L~~~~l~~~~i---------EqP~~~~d~~~~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~ll 323 (427)
-+|+..+ +.++++.+++.+....++ ..| -||+..+++.+ ..+ +||...-.+.+.++.++.+
T Consensus 145 lG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l 217 (323)
T COG0042 145 LGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEML 217 (323)
T ss_pred cccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHH
Confidence 7886555 677888887765431121 223 47999999976 456 9999999999999999999
Q ss_pred HcCCCcEEEeCCCCcc
Q 014285 324 QENLASVVNIKLAKFG 339 (427)
Q Consensus 324 ~~~a~~~i~lk~~~~G 339 (427)
+...+|.+.+-=...|
T Consensus 218 ~~tg~DgVMigRga~~ 233 (323)
T COG0042 218 EYTGADGVMIGRGALG 233 (323)
T ss_pred HhhCCCEEEEcHHHcc
Confidence 9888999887554444
No 60
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.60 E-value=0.15 Score=51.16 Aligned_cols=143 Identities=16% Similarity=0.234 Sum_probs=99.0
Q ss_pred hhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHh--CC-
Q 014285 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HP- 246 (427)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~--~~- 246 (427)
++.-....-|+...+...+|+++.+.++...+.||..|-+..|. +++.-.+.++++|+. .|
T Consensus 57 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pV 136 (333)
T PRK11815 57 LLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPV 136 (333)
T ss_pred HhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCce
Confidence 44333445577788888899999888888878899999988773 223335677888874 23
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe--------CC--------CCCCChhhHHHHHHhhccc-cCCeEEe
Q 014285 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE--------QP--------VHRDDWSGLHDVSNFARDT-YGISVVA 309 (427)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE--------qP--------~~~~d~~~~~~L~~~~r~~-~~iPIa~ 309 (427)
.+++|+-..+.-+.+++.++++.+++.|+. +|. |- +++-+|+..+++++ . ..+||.+
T Consensus 137 svKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI~ 210 (333)
T PRK11815 137 TVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIEI 210 (333)
T ss_pred EEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEEE
Confidence 455555333333567788999999887764 342 11 13346777778864 4 4799998
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
.=.+.+..++.++++. +|.+++==.
T Consensus 211 nGgI~s~eda~~~l~~--aDgVmIGRa 235 (333)
T PRK11815 211 NGGIKTLEEAKEHLQH--VDGVMIGRA 235 (333)
T ss_pred ECCcCCHHHHHHHHhc--CCEEEEcHH
Confidence 8889999999999973 888776433
No 61
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.51 E-value=0.094 Score=52.79 Aligned_cols=120 Identities=16% Similarity=0.273 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHh-CCC--cEEEEeC----CC
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDA----NE 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~-~~~--~~L~vDA----N~ 256 (427)
.+.|+...+.||..|-+..+. +++. -++.+++||+. +++ +.+|+-+ .+
T Consensus 144 ~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~ 223 (343)
T cd04734 144 ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEG 223 (343)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCC
Confidence 344566678999999999831 1121 24678999984 666 4566655 35
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCceEe-------CC------CC-----CC-ChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 257 GYTSEEAVEVLGKLNDMG-VIPVLFE-------QP------VH-----RD-DWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~-l~~~~iE-------qP------~~-----~~-d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
+++.++++++++.|++.+ +. ||+ ++ .+ .. +++..+++. +..++||...=.+.++
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRDP 297 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCCH
Confidence 689999999999999876 43 554 11 11 11 233334443 3678999998888999
Q ss_pred HHHHHHHHcCCCcEEEeC
Q 014285 317 NDVQKVMQENLASVVNIK 334 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~lk 334 (427)
++..++++.+.+|.|.+=
T Consensus 298 ~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 298 AEAEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHHHcCCCCeeeec
Confidence 999999998889987653
No 62
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.35 E-value=0.065 Score=52.35 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=92.4
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-----------CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHH
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-----------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~ 261 (427)
..|+..++...+++++.+.++.+.+.|+..|-+.++. +++.-.+.++++|+.. ++.+.+-.+..++.+
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~ 176 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLE 176 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHH
Confidence 3566667766788888888888888899999998873 1122235677788744 667888888889999
Q ss_pred HHHHHHHHhhhCCCCCceEeCC---------------CCCC-------------ChhhHHHHHHhhcccc--CCeEEecC
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQP---------------VHRD-------------DWSGLHDVSNFARDTY--GISVVADE 311 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP---------------~~~~-------------d~~~~~~L~~~~r~~~--~iPIa~dE 311 (427)
+..+.++.+.+.+.. +|.=+ .... .++..+++++ .. ++||...=
T Consensus 177 ~~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~----~~~~~ipiia~G 250 (289)
T cd02810 177 DIVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAA----RLQLDIPIIGVG 250 (289)
T ss_pred HHHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHH----hcCCCCCEEEEC
Confidence 999999999988764 55421 1000 1222344443 45 68888877
Q ss_pred CCCCHHHHHHHHHcCCCcEEEe
Q 014285 312 SCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~l 333 (427)
-+.+..++.+++..+ +|.+++
T Consensus 251 GI~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 251 GIDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCCHHHHHHHHHcC-ccHheE
Confidence 888888888888866 666655
No 63
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.34 E-value=0.13 Score=51.06 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=93.6
Q ss_pred CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC----------------chhhHHHHHHHHHhCCCcEEEEeC
Q 014285 191 SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCSFILDA 254 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~----------------~~~d~~~l~~ir~~~~~~~L~vDA 254 (427)
....|+...+...+++++.+.++.+.+.||..|-+..|.. ++.-.+.+++||+..+ +.+.|-.
T Consensus 60 ~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKi 138 (319)
T TIGR00737 60 EDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKI 138 (319)
T ss_pred CccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEE
Confidence 3456777788888999999888888888999999988731 1223456677777421 2333333
Q ss_pred CCCCC--HHHHHHHHHHhhhCCCCCceEe-------CCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 255 NEGYT--SEEAVEVLGKLNDMGVIPVLFE-------QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 255 N~~~s--~~~A~~~l~~L~~~~l~~~~iE-------qP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
..+|+ ..+..++++.|++.++. +|- +-.. +.+|+..+++++ ..++||...=.+.+..++.++++
T Consensus 139 r~g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~~----~~~ipvi~nGgI~~~~da~~~l~ 212 (319)
T TIGR00737 139 RIGWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVKQ----AVRIPVIGNGDIFSPEDAKAMLE 212 (319)
T ss_pred EcccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHHH----cCCCcEEEeCCCCCHHHHHHHHH
Confidence 33443 23456788888887753 331 1111 235666667764 67899999999999999999997
Q ss_pred cCCCcEEEeCC
Q 014285 325 ENLASVVNIKL 335 (427)
Q Consensus 325 ~~a~~~i~lk~ 335 (427)
...+|.+++=-
T Consensus 213 ~~gad~VmigR 223 (319)
T TIGR00737 213 TTGCDGVMIGR 223 (319)
T ss_pred hhCCCEEEECh
Confidence 77799888743
No 64
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.21 E-value=0.24 Score=49.31 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=99.0
Q ss_pred hhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC--C-
Q 014285 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH--P- 246 (427)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~--~- 246 (427)
++.-.....|+...+...+++++.+.++...+.||..|-+..|. +++.-.+.++++++.. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44433445677778888899999888888777899999998873 2333456678888742 3
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--------eCCCC--------CCChhhHHHHHHhhcccc-CCeEEe
Q 014285 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--------EQPVH--------RDDWSGLHDVSNFARDTY-GISVVA 309 (427)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--------EqP~~--------~~d~~~~~~L~~~~r~~~-~iPIa~ 309 (427)
.+++|+-.+..=+.+++.++++.+++.++. +| .|-.. +-+|+..+++++ .. .+||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 456665221111457788999999887764 44 23322 126777777764 34 799998
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.=.+.+..|+.+++. .+|.+++==..+
T Consensus 201 NGdI~s~~da~~~l~--g~dgVMigRgal 227 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS--HVDGVMVGREAY 227 (318)
T ss_pred ECCcCCHHHHHHHHh--CCCEEEECHHHH
Confidence 889999999999885 588887744433
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.08 E-value=0.21 Score=49.21 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=89.9
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcC-CcEEEEecc--------C----CchhhHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLG-FSTLKLNVG--------R----NITADFDVLQAIHAVHPHCSFILDANEGYTS 260 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~G-f~~iKlKiG--------~----~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~ 260 (427)
.|+..++...++++..+.++.+.+.| |..|-+.++ . +.+.-.+.+++||+.. ++.+.|--+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 45667777778999988888888888 999998653 1 2344456678888754 5556665553 34
Q ss_pred HHHHHHHHHhhhCCCCCceEe---------------CCC-------------CCCChhhHHHHHHhhccccCCeEEecCC
Q 014285 261 EEAVEVLGKLNDMGVIPVLFE---------------QPV-------------HRDDWSGLHDVSNFARDTYGISVVADES 312 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iE---------------qP~-------------~~~d~~~~~~L~~~~r~~~~iPIa~dE~ 312 (427)
++..++++.+++.++. .|. +|. .+-.++..+++++ .+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~----~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQ----AVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHH----hCCCCEEEECC
Confidence 5777888888876653 221 111 1112344455543 57899999889
Q ss_pred CCCHHHHHHHHHcCCCcEEEeCC
Q 014285 313 CRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 313 ~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+.+.+++.+++..+ +|.+++=-
T Consensus 243 I~~~~da~~~l~aG-Ad~V~igr 264 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVGT 264 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEcH
Confidence 99999999999877 68887643
No 66
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.07 E-value=0.26 Score=46.76 Aligned_cols=131 Identities=12% Similarity=0.124 Sum_probs=92.0
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC-C-CcEEEEeC
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-P-HCSFILDA 254 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~-~-~~~L~vDA 254 (427)
++|+..+++..+++++.+.++.. +.++..|-+..|. +++.-.+.++++++.. | -+++|++
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~- 144 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN- 144 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-
Confidence 34666778888999988777665 6689999988763 3344455566666532 2 3445543
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC---ChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCcE
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD---DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASV 330 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~---d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~~ 330 (427)
|+..+.+++++.+++.+....-|.+=.+.. +|+.++++++ .. ++||.+.=.+.+.+|+.++++. .+|.
T Consensus 145 ---~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~-GAd~ 216 (231)
T TIGR00736 145 ---CIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKA-GADF 216 (231)
T ss_pred ---CCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHh-CCCe
Confidence 455667889999998876534566544332 5777888875 45 4999999999999999999986 4777
Q ss_pred EEe
Q 014285 331 VNI 333 (427)
Q Consensus 331 i~l 333 (427)
+++
T Consensus 217 Vmv 219 (231)
T TIGR00736 217 VSV 219 (231)
T ss_pred EEE
Confidence 775
No 67
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.06 E-value=0.13 Score=52.16 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCC-cEEEEe-------CC
Q 014285 210 ELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPH-CSFILD-------AN 255 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~-~~L~vD-------AN 255 (427)
+.|+..+++||..+-+..+. +-.. =++.+++||+ ++++ +-+|+- ..
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~ 242 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCC
Confidence 44666778999999999762 1111 2567899998 4655 444552 24
Q ss_pred CCCCHHH-HHHHHHHhhhCCCCCceEeCCCCC--CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 256 EGYTSEE-AVEVLGKLNDMGVIPVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 256 ~~~s~~~-A~~~l~~L~~~~l~~~~iEqP~~~--~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
++++.+| ++++++.|++.++. +|+=-... +...-...+++.+++.+++||...-. .++...+++++.+.+|.|-
T Consensus 243 ~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~V~ 319 (362)
T PRK10605 243 NGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDAVA 319 (362)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCEEE
Confidence 5689888 89999999987763 56522110 00000122333333467888887655 4888899999999888865
Q ss_pred e
Q 014285 333 I 333 (427)
Q Consensus 333 l 333 (427)
+
T Consensus 320 ~ 320 (362)
T PRK10605 320 F 320 (362)
T ss_pred E
Confidence 4
No 68
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.96 E-value=0.19 Score=50.88 Aligned_cols=119 Identities=21% Similarity=0.299 Sum_probs=76.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHH-hCCCc--EEEEeC------
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHC--SFILDA------ 254 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~-~~~~~--~L~vDA------ 254 (427)
.+.|+..++.||..|-+..+. +++ --++.+++||+ ++++. .+|+-+
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~ 226 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDY 226 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccccc
Confidence 344566678899999999753 111 12567899999 47774 344432
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCC-CCCChhhHHHHHHhhccccCCeEEecCCC-----------
Q 014285 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPV-HRDDWSGLHDVSNFARDTYGISVVADESC----------- 313 (427)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~----------- 313 (427)
.++.+++++.++++.|++.++. +|+ +|. ...++..-+++. +..++||..-=.+
T Consensus 227 ~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~k----~~~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 227 TARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWTK----KLTGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHHH----HHcCCCEEEECCcccccccccccc
Confidence 1257899999999999887753 443 232 111222222233 3578888775554
Q ss_pred -------CCHHHHHHHHHcCCCcEEEe
Q 014285 314 -------RSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 314 -------~~~~~~~~ll~~~a~~~i~l 333 (427)
.++.+.+++++.+.+|.|.+
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehh
Confidence 58888999999888888554
No 69
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.78 E-value=0.2 Score=50.34 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHhCC-CcEEEEe----CCCCCC
Q 014285 210 ELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAVHP-HCSFILD----ANEGYT 259 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~~~-~~~L~vD----AN~~~s 259 (427)
+.|+...++||..+-+..|. +++. -.+.+++||+.-+ -+.+++- .+++++
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~ 225 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLT 225 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCC
Confidence 44566678999999999872 1111 2456788888422 2334433 356889
Q ss_pred HHHHHHHHHHhhhCCCCCceEeC--------CCC--C-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQ--------PVH--R-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEq--------P~~--~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
+++++++++.|++.++. ||+= +.. + .+++..++++ +..++||..-=.+.+..+.+++|+.+.+
T Consensus 226 ~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik----~~~~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHIR----EHANIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred HHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHHH----hhcCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 99999999999987763 5531 111 1 1233333443 4678998877788899999999999888
Q ss_pred cEEEe
Q 014285 329 SVVNI 333 (427)
Q Consensus 329 ~~i~l 333 (427)
|.|.+
T Consensus 300 D~V~~ 304 (337)
T PRK13523 300 DLIFI 304 (337)
T ss_pred ChHHh
Confidence 87543
No 70
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.73 E-value=0.21 Score=55.79 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=81.8
Q ss_pred HHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCC--cEEEEeC----CCC
Q 014285 210 ELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH--CSFILDA----NEG 257 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~--~~L~vDA----N~~ 257 (427)
+.++..++.||..|-+..|. +++ --++.+++||+. +++ +.+++-+ +++
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g 634 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGG 634 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCC
Confidence 44566678999999999871 111 125678999995 666 3444443 468
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeC--CCCCC----Ch-hhH-HHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCc
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQ--PVHRD----DW-SGL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLAS 329 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq--P~~~~----d~-~~~-~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~ 329 (427)
|+.++++++++.|++.++. ||+= +.... .+ ..+ ..+++.+++..++||..-=.+.+..+.+++++.+.+|
T Consensus 635 ~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 635 NTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRAD 712 (765)
T ss_pred CCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcc
Confidence 9999999999999988764 5541 10000 00 011 1222333346789999888889999999999999999
Q ss_pred EEEe
Q 014285 330 VVNI 333 (427)
Q Consensus 330 ~i~l 333 (427)
.|.+
T Consensus 713 ~v~~ 716 (765)
T PRK08255 713 LCAL 716 (765)
T ss_pred eeeE
Confidence 8766
No 71
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.63 E-value=0.26 Score=47.38 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=104.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCCC--------------
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-------------- 257 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~-------------- 257 (427)
+|+-...++.+.+++.+ +.+.|... +=+|...-++.+.++.+.+.++ .+.+.+|+++.
T Consensus 75 ~pv~~~GGi~s~~d~~~----~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVDK----LLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHHHH----HHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 55556667778776543 44567554 4567655567888888888764 58899997533
Q ss_pred C---CHHHHHHHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 258 Y---TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 258 ~---s~~~A~~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
| +..+..++++.+.+.++.-.-+ ..+.. -|++.++++++ .+++||.+-=-+.+.+++.++++.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 2455678888888877641111 12222 25666677765 578999888888999999999998878
Q ss_pred cEEEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 329 ~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
+.+.+--... |-....++.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 8877755444 5223567778888888875
No 72
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=95.42 E-value=0.33 Score=49.17 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHH-hCCC--cEEEEeC----C-
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDA----N- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~-~~~~--~~L~vDA----N- 255 (427)
.+.++..+++||..+-|.-.. +++ --++.+++||+ ++++ +-+|+=+ +
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC
Confidence 344666778999999999742 111 13667899998 4766 4555533 2
Q ss_pred CCCCHHHHHHHHHHhhhCC-CCCc----eEeCCCCCCChh--h-HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 256 EGYTSEEAVEVLGKLNDMG-VIPV----LFEQPVHRDDWS--G-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~-l~~~----~iEqP~~~~d~~--~-~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
++|+.+++.++++.|++.+ +... |-..+-..-... + ...+++.++....+|+.+--...+++...++++.+.
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~ 311 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGR 311 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 3789999999999999988 3311 112221111111 1 112222223356799998888999999999999988
Q ss_pred CcEEEe
Q 014285 328 ASVVNI 333 (427)
Q Consensus 328 ~~~i~l 333 (427)
+|.|-+
T Consensus 312 aDlVa~ 317 (363)
T COG1902 312 ADLVAM 317 (363)
T ss_pred CCEEEe
Confidence 887654
No 73
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.41 E-value=0.58 Score=45.89 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=88.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC------------CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~ 261 (427)
.|+..++...+++++.+.++...+.|+..|-+.++- +++.-.+.++++|+.. ++.+.+--+. +.+
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~--~~~ 166 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTP--NVT 166 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCC--Cch
Confidence 455566666788888888888888899999997752 2333456778888753 3444444332 334
Q ss_pred HHHHHHHHhhhCCCCCceE-------------e--CCC-------------CCCChhhHHHHHHhhccccCCeEEecCCC
Q 014285 262 EAVEVLGKLNDMGVIPVLF-------------E--QPV-------------HRDDWSGLHDVSNFARDTYGISVVADESC 313 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~i-------------E--qP~-------------~~~d~~~~~~L~~~~r~~~~iPIa~dE~~ 313 (427)
+..++++.+.+.+.. .| + .|. .+-.++..+++++ .+++||...=.+
T Consensus 167 ~~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~----~~~ipii~~GGI 240 (296)
T cd04740 167 DIVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYK----AVEIPIIGVGGI 240 (296)
T ss_pred hHHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHH----hcCCCEEEECCC
Confidence 667777777776542 22 1 121 1112344445543 578999998899
Q ss_pred CCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 314 RSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 314 ~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+..++.++++.+ +|.+++=-..+
T Consensus 241 ~~~~da~~~l~~G-Ad~V~igra~l 264 (296)
T cd04740 241 ASGEDALEFLMAG-ASAVQVGTANF 264 (296)
T ss_pred CCHHHHHHHHHcC-CCEEEEchhhh
Confidence 9999999999987 69888755443
No 74
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.21 E-value=0.2 Score=47.91 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEe-------cc-------CCchhhHHHHHHHHHh--C-CCcE--EEEeCCCC--CC
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLN-------VG-------RNITADFDVLQAIHAV--H-PHCS--FILDANEG--YT 259 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlK-------iG-------~~~~~d~~~l~~ir~~--~-~~~~--L~vDAN~~--~s 259 (427)
+..+++.+.+.++++.+.|...+|+- .| .+.++-.++++++++. . +++. -|.|+-.. .+
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCC
Confidence 34577778888889999999999992 22 1566778889999884 3 3543 46777544 78
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d 310 (427)
.++|++.+++..+.|-...|+|-|. +.+.++++++ ..+.|+..-
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 9999999999999876667999887 5688888886 577888764
No 75
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.96 E-value=1.1 Score=42.50 Aligned_cols=130 Identities=11% Similarity=0.176 Sum_probs=85.5
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCcEEEEeCCCCC
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANEGY 258 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~ 258 (427)
|+..++...+++++.+.++...+ +...|-+..|. +++.-.+.++++|+. ++.+.|=-..+|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 55567777789998877776644 45888887772 233345667788874 344444444457
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCC--CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPV--HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~--~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+ ++..++++.+++.+....-+.+-. ..-||+..+++ ..++||.+.=.+.+.+++.++++.+ +|.+++--
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR 221 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVAR 221 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcC
Confidence 6 677888888988765411222211 12245444444 2579999999999999999999865 88888743
No 76
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.80 E-value=0.92 Score=45.56 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------C---------ch----hhHHHHHHHHH-hCCC-cEEEEeCC------
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------N---------IT----ADFDVLQAIHA-VHPH-CSFILDAN------ 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~---------~~----~d~~~l~~ir~-~~~~-~~L~vDAN------ 255 (427)
.+.++.+++.||..|-+..+. + ++ --++.+++||+ ++++ +.+++-+.
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~ 234 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDM 234 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCC
Confidence 344666778999999999763 1 11 12567899998 4653 55566443
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCCceEeC--CC-----CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 256 -EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-----HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~-----~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
.+.+.++++++++.|++.++. +|+= .. ...+++..++++ +.+++||..-=.+. ..+..++++.+.
T Consensus 235 ~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g~ 307 (338)
T cd02933 235 GDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADGK 307 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcCC
Confidence 245889999999999887653 4442 11 112333344444 36789998776665 888999999988
Q ss_pred CcEEEe
Q 014285 328 ASVVNI 333 (427)
Q Consensus 328 ~~~i~l 333 (427)
+|.|.+
T Consensus 308 ~D~V~~ 313 (338)
T cd02933 308 ADLVAF 313 (338)
T ss_pred CCEEEe
Confidence 998765
No 77
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.52 E-value=0.58 Score=47.27 Aligned_cols=117 Identities=15% Similarity=0.282 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hC----CCcE--EEEeC--
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VH----PHCS--FILDA-- 254 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~----~~~~--L~vDA-- 254 (427)
.+.|+..++.||..|-+..+. +++. -.+.+++||+ ++ +++. +|+.+
T Consensus 147 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 344666678999999998741 1221 2457889998 46 5644 44433
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCCC---CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~---~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
.++++.++++++++.|++.++. ||+ .+.. ...+...+.+.+.. ..++||..-=.+.++++..++
T Consensus 227 ~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~~ 302 (353)
T cd04735 227 PEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALEA 302 (353)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHHH
Confidence 4578999999999999998864 665 1111 11223334444311 136888877778888888888
Q ss_pred HHcCCCcE
Q 014285 323 MQENLASV 330 (427)
Q Consensus 323 l~~~a~~~ 330 (427)
++.+ +|.
T Consensus 303 l~~g-aD~ 309 (353)
T cd04735 303 LETG-ADL 309 (353)
T ss_pred HHcC-CCh
Confidence 8873 665
No 78
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.45 E-value=0.94 Score=44.51 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=96.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhc--CCcEEEEeccC------------CchhhHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKL--GFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~--Gf~~iKlKiG~------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s 259 (427)
.|+..++...+++++.+.++.+.+. ++..|-+.+|. +++.-.+.++++|+.. ++.+.|.-+. +
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~ 167 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--N 167 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--C
Confidence 4555667667889988878777654 38899998872 2333455678888753 3455555553 4
Q ss_pred HHHHHHHHHHhhhCCCCCceEe---------------CCCCCC---------C----hhhHHHHHHhhccccCCeEEecC
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFE---------------QPVHRD---------D----WSGLHDVSNFARDTYGISVVADE 311 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iE---------------qP~~~~---------d----~~~~~~L~~~~r~~~~iPIa~dE 311 (427)
.++..++++.+++.++. .|. +|.... . ++...+++ +..++||...=
T Consensus 168 ~~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~----~~~~ipvi~~G 241 (300)
T TIGR01037 168 VTDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVY----KMVDIPIIGVG 241 (300)
T ss_pred hhhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHH----hcCCCCEEEEC
Confidence 46778888888887764 442 111000 0 12233343 36789999988
Q ss_pred CCCCHHHHHHHHHcCCCcEEEeCCCCc--c--HHH-HHHHHHHHHHcCCc
Q 014285 312 SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLG-TLQIIKATRKSGLH 356 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~lk~~~~--G--i~~-~~~~~~~A~~~gi~ 356 (427)
.+.+.+++.+++..+ +|.+++=-..+ | +.. ..++.++.+++|..
T Consensus 242 GI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 242 GITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred CCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 999999999999876 88887644333 3 222 23445555666643
No 79
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=94.35 E-value=0.99 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCC--cEEEEeCC-----
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH--CSFILDAN----- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~--~~L~vDAN----- 255 (427)
.+.|+..++.||..|-+..+. +++ --++.+++||+. +++ +.+|+-+.
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGP 232 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCC
Confidence 345666778999999999863 011 125678999994 666 45555432
Q ss_pred -CCCCHHHHHHHHHHhhhCCCC-----CceEeCC-CC----CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 256 -EGYTSEEAVEVLGKLNDMGVI-----PVLFEQP-VH----RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP-~~----~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
++++.++++++++.|++. +. .-+.+.. .. ++.+ ...+++.+++.+++||..-=.+.++.+..++++
T Consensus 233 ~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~--~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~ 309 (370)
T cd02929 233 GGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGH--QEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVK 309 (370)
T ss_pred CCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccc--cHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHH
Confidence 237899999999999873 11 0011111 10 1111 112222233468899988778889999999999
Q ss_pred cCCCcEEEeC
Q 014285 325 ENLASVVNIK 334 (427)
Q Consensus 325 ~~a~~~i~lk 334 (427)
.+.+|.|.+=
T Consensus 310 ~g~~D~V~~g 319 (370)
T cd02929 310 SGILDLIGAA 319 (370)
T ss_pred cCCCCeeeec
Confidence 9989987653
No 80
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.06 E-value=1.2 Score=42.54 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=97.6
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC--CCcEEEEeCCC------------CCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE------------GYT 259 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~--~~~~L~vDAN~------------~~s 259 (427)
+|+....++.+.+++.+ +.+.|... +-+|...-.+.+.++.+.+.+ ..+.+.+|+.. +|.
T Consensus 75 ipv~~~GGi~s~~~~~~----~l~~Ga~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDARR----LLRAGADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHHHH----HHHcCCCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 56556667777776544 34557555 455654456677888888865 34778889753 121
Q ss_pred ---HHHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcE
Q 014285 260 ---SEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (427)
Q Consensus 260 ---~~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~ 330 (427)
.....++++.+.+.++. ..+=.++. --|++.++++++ .+++||...=-+.+..|+.++++...++.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 12345666777766653 22222222 235777788875 57899988778889999999987655777
Q ss_pred EEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 331 VNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 331 i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
+.+--... |-....++.+.+++.|+++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 66644443 5333456667778888875
No 81
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=93.74 E-value=1.1 Score=41.55 Aligned_cols=96 Identities=9% Similarity=0.148 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+++++++.++.|-+.+++ .+|=++...+. +.++++++. ...+.|-.+ ++.+.++++++++.+ .+++ +-|+.
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~---~~~~~vGAG-TVl~~~~a~~a~~aG-A~Fi-vsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE---VPDALIGAG-TVLNPEQLRQAVDAG-AQFI-VSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEEEE-eCCCHHHHHHHHHcC-CCEE-ECCCC
Confidence 789999999999999986 89999986554 446677652 224656555 788999999999987 5655 44433
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
..++++.|+++|++++++++.-|-+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi 114 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSEI 114 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHHH
Confidence 3588999999999999999875543
No 82
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.49 E-value=5.2 Score=37.21 Aligned_cols=144 Identities=14% Similarity=0.230 Sum_probs=95.6
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++.+.+..-. ....+.++.+++.+++ .+.|=|..-.+.+++...++.=.+ +
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a~~aGA~------f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRLADAGGR------L 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHHHHcCCC------E
Confidence 344578899999999999999999998643 2455688888887764 366777777888886555443333 4
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-ccHHHHHHHHHHHHHcCCcEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~ 358 (427)
+=-|.. | ....+.++ ..++++..+ +.+..++.++.+.+ +||+.+=|+. .|+....++..... .+++++
T Consensus 87 ivsp~~--~-~~v~~~~~----~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvv 155 (206)
T PRK09140 87 IVTPNT--D-PEVIRRAV----ALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIKALRAVLP-PDVPVF 155 (206)
T ss_pred EECCCC--C-HHHHHHHH----HCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHHHHHhhcC-CCCeEE
Confidence 444543 3 33444443 468888887 88999998888765 7999875533 46444444332221 258888
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
..+-+
T Consensus 156 aiGGI 160 (206)
T PRK09140 156 AVGGV 160 (206)
T ss_pred EECCC
Confidence 76533
No 83
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.37 E-value=0.48 Score=47.61 Aligned_cols=124 Identities=23% Similarity=0.395 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCC--cEEEEeCCC----C
Q 014285 210 ELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPH--CSFILDANE----G 257 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~--~~L~vDAN~----~ 257 (427)
+.|+..+++||..+-+..+. +... -++.+++||+ ++++ +-+|+-+.. +
T Consensus 153 ~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g 232 (341)
T PF00724_consen 153 QAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGG 232 (341)
T ss_dssp HHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTS
T ss_pred HHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCC
Confidence 44666778999999999863 1111 2667899998 5777 477887754 4
Q ss_pred CCHHHHHHHHHHhhhCCCCC--------ceEeCCCC--CCChh-h-HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 258 YTSEEAVEVLGKLNDMGVIP--------VLFEQPVH--RDDWS-G-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~--------~~iEqP~~--~~d~~-~-~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
++.++..++++.+++.++.. .-...|.. +.+.. + ...+++.+++.+.+||..--.+.+.....++++.
T Consensus 233 ~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~ 312 (341)
T PF00724_consen 233 ITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEE 312 (341)
T ss_dssp HHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhc
Confidence 56777766666665533210 01122322 11111 1 1122333334678999988888888878999999
Q ss_pred CCCcEEEe
Q 014285 326 NLASVVNI 333 (427)
Q Consensus 326 ~a~~~i~l 333 (427)
+.+|.|-+
T Consensus 313 g~~DlV~~ 320 (341)
T PF00724_consen 313 GKADLVAM 320 (341)
T ss_dssp TSTSEEEE
T ss_pred CCceEeec
Confidence 99998765
No 84
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.17 E-value=4.8 Score=37.67 Aligned_cols=143 Identities=13% Similarity=0.208 Sum_probs=102.0
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCC-cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH-CSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~-~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
+...+.++..+.++.+.+.|++++-+-.-. ..-++.++++++.+++ -++.|=|-.-.|++++.+.++. |-.
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA~-- 90 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GAQ-- 90 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CCC--
Confidence 345688999999999999999999998853 3457788899887654 2688889999999987666553 432
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHc-CCc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-GLH 356 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~-gi~ 356 (427)
|+=-|.-. .++.+.|+ +.++|+.-| +.|+.++.++++.+ +|++.+=|.-. |+.....+ .... +++
T Consensus 91 FivsP~~~---~~v~~~~~----~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik~l---~~~~p~ip 157 (213)
T PRK06552 91 FIVSPSFN---RETAKICN----LYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIKAI---KGPLPQVN 157 (213)
T ss_pred EEECCCCC---HHHHHHHH----HcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCHHHHHHH---hhhCCCCE
Confidence 66667653 44555554 578999885 66889998888765 89999976443 64443333 2233 488
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
+++.+-+
T Consensus 158 ~~atGGI 164 (213)
T PRK06552 158 VMVTGGV 164 (213)
T ss_pred EEEECCC
Confidence 8887644
No 85
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=92.62 E-value=2 Score=45.81 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=100.9
Q ss_pred eeeeeeecCCCHHH-------HHHHHHHHhhcCCcEEEEeccC--Cc--------hhhHHHHHHHHHhC-CC-cEEEEeC
Q 014285 194 LSTAITIPAVSPAE-------ASELASKYCKLGFSTLKLNVGR--NI--------TADFDVLQAIHAVH-PH-CSFILDA 254 (427)
Q Consensus 194 ip~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~iKlKiG~--~~--------~~d~~~l~~ir~~~-~~-~~L~vDA 254 (427)
+|+-...++.+.++ ..+.++++.+.|...+-+--.. ++ ..+-+.++.+-+.+ .+ +.+.||+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 55555555556543 3577888888887655443211 22 12457888888864 56 8999998
Q ss_pred CCCC-------------------------------------CHHHHHHHHHHhhhCCCCCceEeCCCCCC------Chhh
Q 014285 255 NEGY-------------------------------------TSEEAVEVLGKLNDMGVIPVLFEQPVHRD------DWSG 291 (427)
Q Consensus 255 N~~~-------------------------------------s~~~A~~~l~~L~~~~l~~~~iEqP~~~~------d~~~ 291 (427)
...+ +.-++.++++++++++.. +.+=-=+..| |++.
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 6432 233578899999988764 3444444433 5667
Q ss_pred HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
++++++ .+.+||.+-=-.-++.++.+++....++....--..+ +-....++-+..++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777775 6899998877888999999999865555544322222 3223344555666777765
No 86
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.13 E-value=18 Score=38.28 Aligned_cols=165 Identities=10% Similarity=0.117 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEeCCCC----CC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANEG----YT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vDAN~~----~s--~~~A-~~~l~ 268 (427)
+.+++...++.+-+.||..+-+--|..+ +.+.++|+++|+..++..|..=..|. |. +++. ..+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 6788888899998899999999756433 46899999999988877776444322 32 3333 45777
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC---eEEe-cCCCCCHHHH----HHHHHcCCCcEEEeCCCC-cc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI---SVVA-DESCRSLNDV----QKVMQENLASVVNIKLAK-FG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i---PIa~-dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~G 339 (427)
...+.++.+.-|=.|+. |.+.+....+.+++.-.. -|+- .-..++.+.+ +++.+.+ ++.|.++=+- +.
T Consensus 105 ~a~~~Gidi~RIfd~ln--dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDtaGll 181 (499)
T PRK12330 105 KSAENGMDVFRVFDALN--DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMAALL 181 (499)
T ss_pred HHHHcCCCEEEEEecCC--hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCccCC
Confidence 77777877667888886 455555444333322221 2211 1134566554 4455554 7888886554 23
Q ss_pred -HHHHHHHHHHHHHc---CCcEEEcccCchhHHHHH
Q 014285 340 -VLGTLQIIKATRKS---GLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 -i~~~~~~~~~A~~~---gi~~~~~s~~es~ig~~a 371 (427)
...+.+++...++. ++++.+|+-...|++.+.
T Consensus 182 ~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An 217 (499)
T PRK12330 182 KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS 217 (499)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH
Confidence 45566776666554 699999987666665554
No 87
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.05 E-value=3.1 Score=40.08 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCCC-----------C--
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-----------Y-- 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~-----------~-- 258 (427)
+|+....++.+.+++ +++.+.|+..+ -+|...-++.+.++.+.+.++ .+.+.+|+..+ |
T Consensus 75 ~pv~~gGGi~s~~d~----~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~ 148 (258)
T PRK01033 75 MPLCYGGGIKTLEQA----KKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK 148 (258)
T ss_pred CCEEECCCCCCHHHH----HHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence 344344455566553 34456687754 455434456677888877653 47888997543 2
Q ss_pred -CHHHHHHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 259 -TSEEAVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
+.....++++.++++++. ..+ ++...--|++.++++++ .+++||.+.=-+.+..|+.++++...++.+
T Consensus 149 ~~~~~~~e~~~~~~~~g~~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAG-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAA 223 (258)
T ss_pred cCCCCHHHHHHHHHHcCCC-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEE
Confidence 122345666777666543 222 34444447888888875 588999888889999999999954456665
Q ss_pred Ee
Q 014285 332 NI 333 (427)
Q Consensus 332 ~l 333 (427)
.+
T Consensus 224 iv 225 (258)
T PRK01033 224 AA 225 (258)
T ss_pred EE
Confidence 54
No 88
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.03 E-value=4.4 Score=38.41 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=92.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCC-----------CC--
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANE-----------GY-- 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~-----------~~-- 258 (427)
+|+....++.+.+++.+ +.+.|...+ -+|...-++.+.+..+.+.++ .+.+.+|+.. +|
T Consensus 72 ~pv~~~GGI~s~~d~~~----~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDARR----LLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHHHH----HHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 56666677778776644 344676654 456544556677777766543 4888999751 23
Q ss_pred -CHHHHHHHHHHhhhCCCCCce---EeC--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 259 -TSEEAVEVLGKLNDMGVIPVL---FEQ--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~---iEq--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
+..++.++++.+.+.++.-.- +.. ....-+++.++++++ .+++||.+.=.+.+..++.++++...++.+.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred ecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 345567888888877654111 111 122235777777765 5789998888888999999999876687777
Q ss_pred eCCCCc-c-HHHHHHHHHHHH
Q 014285 333 IKLAKF-G-VLGTLQIIKATR 351 (427)
Q Consensus 333 lk~~~~-G-i~~~~~~~~~A~ 351 (427)
+--... | ++ ..++.+.++
T Consensus 222 vg~al~~~~~~-~~~~~~~~~ 241 (243)
T cd04731 222 AASIFHFGEYT-IAELKEYLA 241 (243)
T ss_pred EeHHHHcCCCC-HHHHHHHHh
Confidence 644333 5 42 344444444
No 89
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.74 E-value=8 Score=38.03 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=79.5
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec-------c-------CCchhhHHHHHHHHHh--CCCcEE--EE
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi-------G-------~~~~~d~~~l~~ir~~--~~~~~L--~v 252 (427)
.+|+..-+ +.+++..+.+.++++.+.|-..+-|-= | .+.++-+++|+++++. .+++-| |-
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 45654432 445888888889999999988877732 2 1445667788888874 455444 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ ..+.|+..
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILA 207 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEE
Confidence 88766679999999999998876667998764 4777888886 45677744
No 90
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.68 E-value=11 Score=34.97 Aligned_cols=142 Identities=14% Similarity=0.192 Sum_probs=103.6
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++++-+-... ..-.+.++.+++.+|+ +.|=|-.-.|++++.+.++ .|-+ |
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~----aGA~--F 83 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVD----AGAQ--F 83 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHH----cCCC--E
Confidence 344688999999999999999999998853 4556788899988885 7788888899998776655 3432 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|=-|.- -.+..+.|+ +.++|..-| +.|+.++..+++.+ ++++-+=|.- .| ..-...+..-- -++++
T Consensus 84 ivsP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~ 151 (204)
T TIGR01182 84 IVSPGL---TPELAKHAQ----DHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRF 151 (204)
T ss_pred EECCCC---CHHHHHHHH----HcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcE
Confidence 756654 245555564 578888884 77999999999886 6888888865 45 44433333322 48999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-.
T Consensus 152 ~ptGGV 157 (204)
T TIGR01182 152 CPTGGI 157 (204)
T ss_pred EecCCC
Confidence 988744
No 91
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.37 E-value=11 Score=35.98 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc------hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI------TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~------~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (427)
+.++..+.++.+.+.|+..|-+-.+... +.+.+.++.+++.+++.++.+.+..+ .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6788888888888899988887777655 67888999999988777776666443 3344444444443
Q ss_pred ceEeCCCCCC--------------ChhhHHHHHHhhccccCCeEEecC-CCC----CHHH---HHHHHHcCCCcEEEeCC
Q 014285 278 VLFEQPVHRD--------------DWSGLHDVSNFARDTYGISVVADE-SCR----SLND---VQKVMQENLASVVNIKL 335 (427)
Q Consensus 278 ~~iEqP~~~~--------------d~~~~~~L~~~~r~~~~iPIa~dE-~~~----~~~~---~~~ll~~~a~~~i~lk~ 335 (427)
++-=+++.. +++...+..+.++ +.++++...= ... +... +.+.+....++.|.+..
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech
Confidence 333333322 2333322222222 3566665543 223 3333 33333334588888765
Q ss_pred CCcc---HHHHHHHHHHHHH-cC-CcEEEcccCchhHHHH
Q 014285 336 AKFG---VLGTLQIIKATRK-SG-LHLMIDGMIETRLATG 370 (427)
Q Consensus 336 ~~~G---i~~~~~~~~~A~~-~g-i~~~~~s~~es~ig~~ 370 (427)
+. | .....++++..++ .+ +++-+|+-...+++.+
T Consensus 168 t~-G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~a 206 (265)
T cd03174 168 TV-GLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVA 206 (265)
T ss_pred hc-CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHH
Confidence 53 5 3445666655444 34 7788887544444433
No 92
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.27 E-value=8.9 Score=37.57 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=78.8
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec-------c-------CCchhhHHHHHHHHHh--CCCcEE--EE
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi-------G-------~~~~~d~~~l~~ir~~--~~~~~L--~v 252 (427)
.+|+..-+ +.+++..+.+.++++.+.|-..+-|-= | .+.++=+++|+++++. .+++-| |-
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 45654432 445788888889999999988877732 2 1445667788888884 345433 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ ..+.|+.
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~---~~e~i~~~~~----~i~~Pl~ 201 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEALT---SLEEFRQFAK----AVKVPLL 201 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHH----hcCCCEE
Confidence 99877789999999999998876667998765 4667788886 4567774
No 93
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.23 E-value=2.2 Score=39.58 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+++++.+.++.|.+-+++ .||=++...+. +.+++|++. .-.+-|-.+ ++.+.++++++++.+ .+++ +-|..
T Consensus 14 ~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~---~~~~~vGAG-TVl~~e~a~~ai~aG-A~Fi-vSP~~ 85 (201)
T PRK06015 14 DVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAE---VEEAIVGAG-TILNAKQFEDAAKAG-SRFI-VSPGT 85 (201)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEeeE-eCcCHHHHHHHHHcC-CCEE-ECCCC
Confidence 789999999999999986 89999986554 446666642 223445444 888999999999987 5543 34443
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|+++|++++++.+.-|-+
T Consensus 86 ~-----~~vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 86 T-----QELLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred C-----HHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2 588999999999999999875544
No 94
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=90.96 E-value=12 Score=36.81 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=75.8
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEecc----------------CCchhhHHHHHHHHHh--CCCcEE--
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVG----------------RNITADFDVLQAIHAV--HPHCSF-- 250 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKiG----------------~~~~~d~~~l~~ir~~--~~~~~L-- 250 (427)
.+|+..-+ +.+++..+.+-++++.+.|-..+-|-=+ .+.++-.++|+++++. .+++-|
T Consensus 75 ~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~A 154 (290)
T TIGR02321 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIA 154 (290)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45654432 3345556777788898899887777322 1334446788888873 455444
Q ss_pred EEeCC-CCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 251 ILDAN-EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 251 ~vDAN-~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
|-|+- .....++|++.+++..+.|-...|+|-|.. +.++++++++.+ ..++|+..
T Consensus 155 RTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~--~~~ei~~~~~~~--~~p~pv~~ 210 (290)
T TIGR02321 155 RVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVL 210 (290)
T ss_pred EeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHhc--CCCCCeEE
Confidence 67886 456789999999999998866568977643 567888888632 23467754
No 95
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.92 E-value=9.7 Score=37.48 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=93.1
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec-------c----C---CchhhHHHHHHHHHh--CCCcE--EEE
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G----R---NITADFDVLQAIHAV--HPHCS--FIL 252 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi-------G----~---~~~~d~~~l~~ir~~--~~~~~--L~v 252 (427)
.+|+..-+ +.+++.++.+.++++.+.|...+-|-= | . +.++-.++|+++++. .+++- -|-
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 45654432 344555677778889889988877732 2 1 345557788888874 34543 478
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe--cC----CCCCHHHHHHHHHcC
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DE----SCRSLNDVQKVMQEN 326 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~--dE----~~~~~~~~~~ll~~~ 326 (427)
|+......++|++.+++..+.|-...|+|-|. +.++++++++ ..+.|+.. -+ ...+. +++-+.
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~---~~~ei~~~~~----~~~~P~~~nv~~~~~~p~~s~---~eL~~l- 225 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGADCIFLEAML---DVEEMKRVRD----EIDAPLLANMVEGGKTPWLTT---KELESI- 225 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEecCCC---CHHHHHHHHH----hcCCCeeEEEEecCCCCCCCH---HHHHHc-
Confidence 99877889999999999998876667998754 4677888886 45556522 11 12233 333333
Q ss_pred CCcEEEeCCCCcc--HHHHHHHHHHHHHcC
Q 014285 327 LASVVNIKLAKFG--VLGTLQIIKATRKSG 354 (427)
Q Consensus 327 a~~~i~lk~~~~G--i~~~~~~~~~A~~~g 354 (427)
.++.+..-++... .....+.++.-.+.|
T Consensus 226 G~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 226 GYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3666655554432 334444444444444
No 96
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=90.84 E-value=6.3 Score=37.49 Aligned_cols=141 Identities=15% Similarity=0.236 Sum_probs=93.5
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCC------CCCH---HHHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANE------GYTS---EEAV 264 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~------~~s~---~~A~ 264 (427)
|+-...++.|.+. ++++++.|...+-+ |.-.-+|-++++.+.+.+ ..+-+.+|++. +|.. -++.
T Consensus 77 ~vQvGGGIRs~~~----v~~ll~~G~~rVii--Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~ 150 (241)
T COG0106 77 PVQVGGGIRSLED----VEALLDAGVARVII--GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELE 150 (241)
T ss_pred CEEeeCCcCCHHH----HHHHHHCCCCEEEE--ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHH
Confidence 3333445566544 55677889877554 322246778888888865 56899999986 4632 2456
Q ss_pred HHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc-CCCcEEEeCCCC
Q 014285 265 EVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAK 337 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~-~a~~~i~lk~~~ 337 (427)
++++++++.++. .+| |==+.--|++.+++|++ .+.+|+-.-=-+.+.+|++.+-+. +...+|+=+.-.
T Consensus 151 ~l~~~~~~~g~~-~ii~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 151 ELAKRLEEVGLA-HILYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHHHhcCCC-eEEEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 677777777653 222 33444458889999997 679999887788999999988887 455555556555
Q ss_pred cc-H--HHHHHH
Q 014285 338 FG-V--LGTLQI 346 (427)
Q Consensus 338 ~G-i--~~~~~~ 346 (427)
.| + .++++.
T Consensus 226 ~g~~~l~ea~~~ 237 (241)
T COG0106 226 EGKFTLEEALAC 237 (241)
T ss_pred cCCCCHHHHHHH
Confidence 56 5 344443
No 97
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.45 E-value=14 Score=34.35 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=102.9
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++++-+-... ..-++.++.+++.+|+ +.|=|-.-.|.+++.+.++ .|-+ |
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai~----aGA~--F 79 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAAK----AGSR--F 79 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHHH----cCCC--E
Confidence 344688999999999999999999998853 3456778888887875 7788888899998766655 3443 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC-Ccc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA-KFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~-~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|=-|.-. .++.+.|+ +.++|..-| +.|+.++..+++.+ ++++-+=|. .+| ..-...+..-- -++++
T Consensus 80 ivSP~~~---~~vi~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l 147 (201)
T PRK06015 80 IVSPGTT---QELLAAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFF 147 (201)
T ss_pred EECCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcE
Confidence 7777653 34455554 578888876 67899999999986 688888885 454 44433332222 48999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 148 ~ptGGV 153 (201)
T PRK06015 148 CPTGGI 153 (201)
T ss_pred EecCCC
Confidence 998744
No 98
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=90.25 E-value=12 Score=35.89 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHH-HHHHHhC--CCcEEEEeC--C----CCCCHHHHHHHHH-HhhhC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVL-QAIHAVH--PHCSFILDA--N----EGYTSEEAVEVLG-KLNDM 273 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l-~~ir~~~--~~~~L~vDA--N----~~~s~~~A~~~l~-~L~~~ 273 (427)
+.++..+.++...+.|++.|-.--.-......+.+ +++++.. .++.|.-=. . ..++.+...+.++ .|+.+
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45667777888889999997543221111123333 4555543 233322111 1 1256666554443 24443
Q ss_pred C---CCCceEeCCCCC-----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc--CCCcEEEeCCCCccHHHH
Q 014285 274 G---VIPVLFEQPVHR-----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLAKFGVLGT 343 (427)
Q Consensus 274 ~---l~~~~iEqP~~~-----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~--~a~~~i~lk~~~~Gi~~~ 343 (427)
+ +.+.++-.|-.. +-|+.|.++.+ .+.==+.|=+.++...+.++++. ..++++|+..+.+--...
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVK-----EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHH-----cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchH
Confidence 3 223455566443 23455555543 23223445567778888888887 789999998877631112
Q ss_pred HHHHHHHHHcCCcEEEcccCchh
Q 014285 344 LQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
..+.+.|+++||+++..+.+..+
T Consensus 182 ~~~~~~~~~~gi~v~~~~~l~~g 204 (285)
T cd06660 182 EELLPYCREHGIGVIAYSPLAGG 204 (285)
T ss_pred HHHHHHHHHcCcEEEEeccccCc
Confidence 27899999999999988876544
No 99
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=90.10 E-value=2.6 Score=41.74 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
-+.+.++++ ++++|+.+|=+.. ..-+.+..+. +++-+.+.|..+| -....++++.|+++|+++-++-.+.
T Consensus 63 A~A~~~Ik~----~~~vPLVaDiHf~-~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 63 AEALKEIKQ----RLNVPLVADIHFD-YRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred HHHHHHHHH----hCCCCEEEEeecc-HHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 345566654 7899999997765 3333444444 4899999999999 6779999999999999998876543
No 100
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.78 E-value=3 Score=39.00 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+.++|++.++.|.+-|++ .+|=++...+ .+.+++|++.....-++-|..| .+.+.++++++++.+ .++++ -|+.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aG-A~Fiv-sP~~ 97 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAG-AQFIV-SPSF 97 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcC-CCEEE-CCCC
Confidence 789999999999999986 8999998655 3456777652100012445444 889999999999987 55544 4444
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|+++|++++++++..+-+
T Consensus 98 ~-----~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 98 N-----RETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred C-----HHHHHHHHHcCCCEECCcCCHHHH
Confidence 3 578889999999999999765543
No 101
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=89.59 E-value=12 Score=36.77 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEE------e----cc-------CCchhhHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 014285 203 VSPAEASELASKYCKLGFSTLKL------N----VG-------RNITADFDVLQAIHAV--HPHCSF--ILDAN-EGYTS 260 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKl------K----iG-------~~~~~d~~~l~~ir~~--~~~~~L--~vDAN-~~~s~ 260 (427)
.++..+.+.++++.+.|...+-+ | .| .+.++=.++|+++++. .+++.| |-|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 58888888899999999988888 1 11 1345557778888774 455444 67774 35679
Q ss_pred HHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccc-cCCeEEe
Q 014285 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVA 309 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~-~~iPIa~ 309 (427)
++|++.+++..+.|-...|+|-+. .+.++++++++.++.. -++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEE
Confidence 999999999999886666888432 2567777877633210 1457654
No 102
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.53 E-value=3.3 Score=38.57 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
++++|+...++|-+-|++ -||=|+...++ +..+++++. .-..-|.+| .+.+..+++++++.++ + +++-|+.
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~---~p~~lIGAG-TVL~~~q~~~a~~aGa-~-fiVsP~~ 94 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKE---FPEALIGAG-TVLNPEQARQAIAAGA-Q-FIVSPGL 94 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHh---CcccEEccc-cccCHHHHHHHHHcCC-C-EEECCCC
Confidence 689999999999999986 89999987664 456777752 223445444 7889999999999874 4 3444544
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
. .++++.|..+|++++++++.-|
T Consensus 95 ~-----~ev~~~a~~~~ip~~PG~~Tpt 117 (211)
T COG0800 95 N-----PEVAKAANRYGIPYIPGVATPT 117 (211)
T ss_pred C-----HHHHHHHHhCCCcccCCCCCHH
Confidence 2 5889999999999999997644
No 103
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=89.34 E-value=9 Score=35.88 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=80.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC-CcEEEEeCC------CCC---CHHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-HCSFILDAN------EGY---TSEEA 263 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~-~~~L~vDAN------~~~---s~~~A 263 (427)
+|+....++.+.+++. ++.+.|... +=+|...-++.+.++.+.+.++ .+.+.+|.. .+| +....
T Consensus 75 ~pv~~~GGI~~~ed~~----~~~~~Ga~~--vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~ 148 (233)
T PRK00748 75 IPVQVGGGIRSLETVE----ALLDAGVSR--VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTA 148 (233)
T ss_pred CCEEEcCCcCCHHHHH----HHHHcCCCE--EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCH
Confidence 4544555666766653 445567553 4466544445556666666544 478888973 233 11223
Q ss_pred HHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 264 VEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.++++.+++.+.. ..+ ++....-|++.++++++ .+++||...=-+.+..|++++++.+.++.+.+=
T Consensus 149 ~e~~~~~~~~g~~-~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVK-AIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCC-EEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 4556666665432 112 22333346888888875 578999888889999999999998767776653
No 104
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=88.99 E-value=8.8 Score=36.48 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=85.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCC------CCC--HHHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANE------GYT--SEEAV 264 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~------~~s--~~~A~ 264 (427)
+|+....++.+.+++ +++.+.|.. |+-+|...-+|.+.++.+-+.+ ..+.+.+|... +|. ..+..
T Consensus 76 ~pv~vgGGirs~edv----~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~ 149 (241)
T PRK14024 76 VKVELSGGIRDDESL----EAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLW 149 (241)
T ss_pred CCEEEcCCCCCHHHH----HHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHH
Confidence 344444566676654 455677876 4455654456777777776654 45667778732 453 33456
Q ss_pred HHHHHhhhCCCC-----CceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc--CCCcEEEeCCC
Q 014285 265 EVLGKLNDMGVI-----PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLA 336 (427)
Q Consensus 265 ~~l~~L~~~~l~-----~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~--~a~~~i~lk~~ 336 (427)
++++.+++.++. ..--++-...-||+.++++++ .+++||...=.+.+..|+.++.+. ..++.+.+--.
T Consensus 150 ~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 150 EVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 778888877653 111244444457888899886 578999888889999999888642 35776666433
No 105
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=88.83 E-value=9.8 Score=35.72 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC-C-cEEEEeCCCC------------C-
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-H-CSFILDANEG------------Y- 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~-~-~~L~vDAN~~------------~- 258 (427)
+|+....+..+.+++.+ +.+.|+..+ -+|...-++.+.++.+.+.++ + +.+.+|+... |
T Consensus 75 ~pv~~~ggi~~~~d~~~----~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~ 148 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKK----LLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGR 148 (232)
T ss_pred CCEEEECCCCCHHHHHH----HHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCc
Confidence 34444555666665543 445687754 445444456678888877643 3 6678886542 2
Q ss_pred --CHHHHHHHHHHhhhCCCCCceE-----eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 259 --TSEEAVEVLGKLNDMGVIPVLF-----EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 259 --s~~~A~~~l~~L~~~~l~~~~i-----EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
+..++.++++.+++.++.-.-+ +.-...-+++.++++++ .+++||.+.=-+.+..++.+.+....++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV 224 (232)
T TIGR03572 149 RATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAV 224 (232)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 2345677888888776541111 11122235777888875 578999888888899999985555567776
Q ss_pred Ee
Q 014285 332 NI 333 (427)
Q Consensus 332 ~l 333 (427)
.+
T Consensus 225 ~v 226 (232)
T TIGR03572 225 AA 226 (232)
T ss_pred EE
Confidence 54
No 106
>PLN02411 12-oxophytodienoate reductase
Probab=88.58 E-value=8.6 Score=39.45 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCC-cEEEEeC----C--
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPH-CSFILDA----N-- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~-~~L~vDA----N-- 255 (427)
.+.|+..+++||..|-|+.+. +-.. =++.|++||+ ++++ +-+|+-+ +
T Consensus 168 ~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~ 247 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDA 247 (391)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCC
Confidence 344666778999999999752 1111 2577899998 4665 4455543 1
Q ss_pred -CCCCHHHHHHHHHHhhhC------CCCCceEeC--C--------C--CCCChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 256 -EGYTSEEAVEVLGKLNDM------GVIPVLFEQ--P--------V--HRDDWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~------~l~~~~iEq--P--------~--~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
..-+.++++.+.+.|+.. ++ .+|+= + . .......+..+++.+++..++||..-=.+ +.
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~ 324 (391)
T PLN02411 248 TDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TR 324 (391)
T ss_pred CCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CH
Confidence 122356677777776642 12 13321 1 0 00000011123233334567888766665 56
Q ss_pred HHHHHHHHcCCCcEEEe
Q 014285 317 NDVQKVMQENLASVVNI 333 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~l 333 (427)
....++++.+.+|.|-+
T Consensus 325 ~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 325 ELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 77888998888887654
No 107
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=88.47 E-value=2.8 Score=38.69 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
-+.++|.+.+++|.+-+++ .+|=++...+. +.++++++. .-.+-|-.+ ++.+.++++++++.++ ++++ -|.
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aGA-~Fiv-SP~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAGA-QFIV-SPG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEE-ESS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcCC-CEEE-CCC
Confidence 3578999999999999986 89999986654 445556652 234556555 7899999999999874 4433 333
Q ss_pred CccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. ..++++.|+++|++++++.+.-|-+
T Consensus 89 ~-----~~~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 89 F-----DPEVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp -------HHHHHHHHHHTSEEEEEESSHHHH
T ss_pred C-----CHHHHHHHHHcCCcccCCcCCHHHH
Confidence 2 3588999999999999999875544
No 108
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.30 E-value=9.7 Score=35.62 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=82.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-C-CcEEEEeCCCC------C---CHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDANEG------Y---TSEE 262 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-~~~L~vDAN~~------~---s~~~ 262 (427)
+|+-...++.+++++ +++.+.|... +=+|...-.|.+.++.+.+.+ . .+.+.+|...+ | +..+
T Consensus 74 ~pv~~~GgI~~~e~~----~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~ 147 (234)
T cd04732 74 IPVQVGGGIRSLEDI----ERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVS 147 (234)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCC
Confidence 444444556676654 4455678554 446655456777888888764 3 57778886431 2 2234
Q ss_pred HHHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 263 AVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
..++++.+++.+.. .++ ++.....+++.++++++ .+++||...=-+.+.++++++++. .++.+.+-
T Consensus 148 ~~~~~~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~-Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKEL-GVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHC-CCCEEEEe
Confidence 45667777665543 222 22333346788888875 578999998899999999999886 46666653
No 109
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.26 E-value=6.1 Score=38.05 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeC--------------CCCCCChhhHHHHHHhhccccCCeEE--ecCCCCCHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVV--ADESCRSLND 318 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------P~~~~d~~~~~~L~~~~r~~~~iPIa--~dE~~~~~~~ 318 (427)
|..|+.++.+++++.|.+.|++ +||= |...++++.++++.+. ..+..++ ..-......+
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~ 90 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDD 90 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHH
Confidence 3457899999999999999985 8987 5556677777777542 1234443 2333456778
Q ss_pred HHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 319 VQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 319 ~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
++++++. .++.+.+-.+..=.....+.++.|+++|+.+.+.-
T Consensus 91 i~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 91 LKMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 8888876 48888774433225677889999999999886543
No 110
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.26 E-value=13 Score=35.18 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=82.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCCC------CC---HHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEG------YT---SEEA 263 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~~------~s---~~~A 263 (427)
+|+....++.+.+++ +++.+.|...+ =+|...-+|.+.++.+.+.+ .++-+.+|+... |. .-+.
T Consensus 77 ~pi~vGGGIrs~e~v----~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~ 150 (234)
T PRK13587 77 KDIEVGGGIRTKSQI----MDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNL 150 (234)
T ss_pred CeEEEcCCcCCHHHH----HHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCH
Confidence 444444566676654 45667776654 45654456788899998876 468899998433 42 1223
Q ss_pred HHHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++++.+.++++. ..|=-.+.. -|++-+.++++ .+++||-..=-+.+.+|+.++++.+ ++.+.+
T Consensus 151 ~~~~~~~~~~g~~-~ii~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIPLG-GIIYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred HHHHHHHHHcCCC-EEEEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 5666777666643 233333332 25677777775 5788998888889999999998764 555444
No 111
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.14 E-value=19 Score=32.23 Aligned_cols=130 Identities=8% Similarity=0.064 Sum_probs=81.1
Q ss_pred ceeeeeeecCCC----HHHHHHHHHHHhhcCCcEEEEeccC----C--chhhHHHHHHHHHhC-CCcEEEEeCCCCC--C
Q 014285 193 SLSTAITIPAVS----PAEASELASKYCKLGFSTLKLNVGR----N--ITADFDVLQAIHAVH-PHCSFILDANEGY--T 259 (427)
Q Consensus 193 ~ip~~~~i~~~~----~~~~~~~~~~~~~~Gf~~iKlKiG~----~--~~~d~~~l~~ir~~~-~~~~L~vDAN~~~--s 259 (427)
++|+...++..+ .++..+.++.+.+.|...+.+-.-. + .+.-.+.++++++.. .++.+++..+-.+ +
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~ 127 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKT 127 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCC
Confidence 456555555555 7788888999999999999986432 1 233355666777653 5688888776443 5
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCC----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
+++..+..+.+.+.++. .|-..... .+++.++++.+.. ..++||..--...+...+.+.+..+
T Consensus 128 ~~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 128 ADEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAV--GGRVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhc--ccCCcEEEECCCCCHHHHHHHHHhc
Confidence 77666666666666764 67655432 2677777776521 1144553332233566677777765
No 112
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=88.11 E-value=4.7 Score=40.12 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+..++-+++|++.|-. .+==-++. ++-+.+.++++ .+++|+.+|=+..-. -....++ ..+|-+.+.|..+
T Consensus 33 v~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~~----~~~iPlVADIHFd~~-lAl~a~~-~g~dkiRINPGNi 104 (346)
T TIGR00612 33 IDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIKE----GTNVPLVADIHFDYR-LAALAMA-KGVAKVRINPGNI 104 (346)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHh----CCCCCEEEeeCCCcH-HHHHHHH-hccCeEEECCCCC
Confidence 34445555556555543 22222221 12334455543 789999999665422 2233344 3589999999999
Q ss_pred c-HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 339 G-VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
| -....++++.|+++|+++-++-..
T Consensus 105 g~~e~v~~vv~~ak~~~ipIRIGVN~ 130 (346)
T TIGR00612 105 GFRERVRDVVEKARDHGKAMRIGVNH 130 (346)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 9 778999999999999999887543
No 113
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=88.03 E-value=21 Score=32.54 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=85.7
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
...+++++.+.++.+.+.|++.+-+..-. ....+.++.+++.+|++.+- +-.-.+.+++...+ .+ +.. ++
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~iG--ag~v~~~~~~~~a~-~~---Ga~--~i 80 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEALIG--AGTVLTPEQADAAI-AA---GAQ--FI 80 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCEEE--EEeCCCHHHHHHHH-Hc---CCC--EE
Confidence 34578888899999999999999998754 23666888888888764433 33334455533222 22 221 33
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHc-CCcEE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-GLHLM 358 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~-gi~~~ 358 (427)
==| ..+ ....+.++ ..++|+..| +.|..++.++++. .+|++.+.|... |..-...+ .... +++++
T Consensus 81 ~~p--~~~-~~~~~~~~----~~~~~~i~g--v~t~~e~~~A~~~-Gad~i~~~p~~~~g~~~~~~l---~~~~~~~p~~ 147 (190)
T cd00452 81 VSP--GLD-PEVVKAAN----RAGIPLLPG--VATPTEIMQALEL-GADIVKLFPAEAVGPAYIKAL---KGPFPQVRFM 147 (190)
T ss_pred EcC--CCC-HHHHHHHH----HcCCcEECC--cCCHHHHHHHHHC-CCCEEEEcCCcccCHHHHHHH---HhhCCCCeEE
Confidence 223 223 34444443 467888774 3488999888876 489999987543 43322222 2233 57887
Q ss_pred Eccc
Q 014285 359 IDGM 362 (427)
Q Consensus 359 ~~s~ 362 (427)
..+-
T Consensus 148 a~GG 151 (190)
T cd00452 148 PTGG 151 (190)
T ss_pred EeCC
Confidence 7653
No 114
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.74 E-value=5.9 Score=37.36 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
++++|.+.++.|-+-|++ .+|=++...+ .+.+++|++..+++. .+-|-.+ ++.+.++++.+++.+ .+++ +-|.
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aG-A~Fi-VsP~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLG-ANFI-VTPL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcC-CCEE-ECCC
Confidence 789999999999999986 8999997544 455666753221222 2444444 889999999999987 5544 3343
Q ss_pred CccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
.. .++++.|+++|++++++.+.-|-+
T Consensus 100 ~~-----~~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 100 FN-----PDIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred CC-----HHHHHHHHHcCCCEeCCCCCHHHH
Confidence 32 578899999999999999875544
No 115
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=87.67 E-value=5.7 Score=39.83 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+..++-+++|++.|-. .+==-++. ++-+.+.++++ ++++|+.+|=+. +..-....++. .+|-+.+.|..+
T Consensus 41 v~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~~----~~~iPlvADIHF-d~~lAl~a~~~-G~~~iRINPGNi 112 (360)
T PRK00366 41 VEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIKK----QLPVPLVADIHF-DYRLALAAAEA-GADALRINPGNI 112 (360)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHHH----cCCCCEEEecCC-CHHHHHHHHHh-CCCEEEECCCCC
Confidence 34445555555555543 23222321 12344555654 789999999553 33333445554 489999999999
Q ss_pred c-HH-HHHHHHHHHHHcCCcEEEcccC
Q 014285 339 G-VL-GTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 339 G-i~-~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
| +. ...++++.|+++|+++-++...
T Consensus 113 g~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 8 45 6889999999999999887543
No 116
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=87.54 E-value=41 Score=35.40 Aligned_cols=163 Identities=13% Similarity=0.201 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEeCCC----CCCH--HH-HHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANE----GYTS--EE-AVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vDAN~----~~s~--~~-A~~~l~ 268 (427)
+.++|...++.+-+.||..+-+--|..+ +.+.++++++|+..|+..|..=..| +|.. ++ ...+++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 5788888888888899999999866533 4789999999998776554322222 3442 34 445778
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe----E-EecCCCCCHHH----HHHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----V-VADESCRSLND----VQKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP----I-a~dE~~~~~~~----~~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.|+++..+=+.+. |.+.+....+.+++ .+.- | ..+...++.+- ++++.+. .++.|.++=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~-Gad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM-GADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc-CCCEEEECCCC-C
Confidence 88888888767777775 45555544443332 2221 2 12223334333 2455555 47888886654 5
Q ss_pred ---HHHHHHHHHHHHH-cCCcEEEcccCchhHHHHH
Q 014285 340 ---VLGTLQIIKATRK-SGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 ---i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a 371 (427)
...+.+++...++ -++++.+|+-...|++.+.
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An 223 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMT 223 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHH
Confidence 4456666655554 4688889886656555443
No 117
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.52 E-value=8.7 Score=36.25 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=79.2
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-C-CcEEEEeCC------CCCCHH---HH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDAN------EGYTSE---EA 263 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-~~~L~vDAN------~~~s~~---~A 263 (427)
|+....++.+.+++ +.+.+.|... +-+|.....+.+.++.+++.+ + .+-+.+|+. .+|..+ +.
T Consensus 78 ~l~v~GGi~~~~~~----~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~ 151 (241)
T PRK13585 78 PVQLGGGIRSAEDA----ASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTP 151 (241)
T ss_pred cEEEcCCcCCHHHH----HHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCH
Confidence 33344456676654 3445678764 466754445667888888864 3 466788875 344211 23
Q ss_pred HHHHHHhhhCCCCCce---E--eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 264 VEVLGKLNDMGVIPVL---F--EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~---i--EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.++++.+.+.++.... + +.....-+++.++++++ .+.+||...=.+.+..++.++.+.+ ++.+.+-
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEE
Confidence 4566666666543111 2 22223346788888876 5789998888889999999877664 5665553
No 118
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.36 E-value=8.8 Score=37.14 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC------------ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD------------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~------------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
|-.|+.++.+++++.|++.|++ +||==++.. +.+.++++.+..+.++.+-....-......+++.+
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 4468999999999999999986 999876533 14556666542111233333333333455666666
Q ss_pred HHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 323 l~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
.+. .++.+.+-....-+..+++.++.|+++|+.+.++-
T Consensus 92 ~~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 92 SGS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred hcC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 554 47876665433348889999999999999988763
No 119
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=87.00 E-value=8.5 Score=36.68 Aligned_cols=135 Identities=9% Similarity=0.043 Sum_probs=91.0
Q ss_pred ceeeeeee--cCCC-HHHHHHHHHHHhhcCCcEEEEecc---------CCchhhHHHHHHHHHh--CCCc--EEEEeCCC
Q 014285 193 SLSTAITI--PAVS-PAEASELASKYCKLGFSTLKLNVG---------RNITADFDVLQAIHAV--HPHC--SFILDANE 256 (427)
Q Consensus 193 ~ip~~~~i--~~~~-~~~~~~~~~~~~~~Gf~~iKlKiG---------~~~~~d~~~l~~ir~~--~~~~--~L~vDAN~ 256 (427)
.+|+..-+ ++++ +..+.+.++++.+.|...+-|-=. .+.++-.++|+++++. .+++ --|-|+-.
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~ 148 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFL 148 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHC
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccc
Confidence 35654433 3345 889989999999999988877533 1456678889999884 3454 44788854
Q ss_pred --CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 257 --GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 257 --~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
....++|++.+++..+.|-...|+|-+. +.++++++++ ..+.|+..-.. .+..+++++-+.+ +..+..-
T Consensus 149 ~~~~~~deaI~R~~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~~ 219 (238)
T PF13714_consen 149 RAEEGLDEAIERAKAYAEAGADMIFIPGLQ---SEEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEETTSS---SHHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEET
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEEc
Confidence 6678999999999999887666888884 3566888886 45788876553 3224556666554 6666655
Q ss_pred CC
Q 014285 335 LA 336 (427)
Q Consensus 335 ~~ 336 (427)
++
T Consensus 220 ~~ 221 (238)
T PF13714_consen 220 NS 221 (238)
T ss_dssp SH
T ss_pred HH
Confidence 43
No 120
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=86.89 E-value=10 Score=35.32 Aligned_cols=143 Identities=16% Similarity=0.241 Sum_probs=98.4
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+-..++++..+.++.+++.|++++-+-.-. ..-.+.++++++.+| +..+=|.--.+++|+.+..+.=.+ |
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl~s--p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~------f 88 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITLRT--PAALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQ------F 88 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEecCC--CCHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCC------E
Confidence 445789999999999999999999998864 234667888888888 778888888999987776554344 4
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-ccHHHHHHHHHHHHHcCCcEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~ 358 (427)
+=-|-- ..+..+.|. ..++|+.-| +.|+.++..+++.+ ++.+-+=|.. +|-...++...- =--+++++
T Consensus 89 iVsP~~---~~ev~~~a~----~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~g-P~~~v~~~ 157 (211)
T COG0800 89 IVSPGL---NPEVAKAAN----RYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAG-PFPQVRFC 157 (211)
T ss_pred EECCCC---CHHHHHHHH----hCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcC-CCCCCeEe
Confidence 545543 345666665 688999886 67888998899876 5665555544 352222222111 11247788
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
+++-.
T Consensus 158 pTGGV 162 (211)
T COG0800 158 PTGGV 162 (211)
T ss_pred ecCCC
Confidence 87644
No 121
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=86.86 E-value=8.5 Score=36.74 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCC-------CCC--------CHHHHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDAN-------EGY--------TSEEAVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN-------~~~--------s~~~A~~~l~ 268 (427)
++++..+.++++.+.|-..+|+--+. +-+++++++++.+=-+-=|.|+. ++| ..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 56788888999999999999998653 34567888887542233477872 111 3678899999
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
++++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999988666699966 4677788886 57889865
No 122
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=86.80 E-value=51 Score=35.80 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A-~~~l~ 268 (427)
+.+++.+.+..+.+.||..+-+--|.. -+++.++++.+|+..|+..+..=.++ +|+ +++. ..+++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 577888888888889999999864432 24678999999998888877765443 343 3443 35666
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec-----CCCCCHHHH----HHHHHcCCCcEEEeCCCCc-
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-----ESCRSLNDV----QKVMQENLASVVNIKLAKF- 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d-----E~~~~~~~~----~~ll~~~a~~~i~lk~~~~- 338 (427)
...+.++....|=.++. |...+....+.++ +.+.-+... ...++...+ +++.+. .+|.|.++=+-=
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~-Gad~I~i~Dt~G~ 179 (592)
T PRK09282 104 KAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEM-GCDSICIKDMAGL 179 (592)
T ss_pred HHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCCEEEECCcCCC
Confidence 66676776445666664 4555554443333 234434322 223444443 455555 478888876552
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
. ...+.++++..+ +.++++-+|+-..+|++.+.
T Consensus 180 ~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 214 (592)
T PRK09282 180 LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMT 214 (592)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHH
Confidence 2 455666666654 45888999887666665554
No 123
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=86.36 E-value=54 Score=35.63 Aligned_cols=163 Identities=14% Similarity=0.201 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHHH-HHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A~-~~l~ 268 (427)
+.++|...+..+-+.||..+-+--|.. -+.+.++++.+|+..|+..|..=..| +|. +++.+ .+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 467788888888889999999988752 25789999999998887776543321 232 34444 5788
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC-e---EEe-cCCCCCHHHH----HHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI-S---VVA-DESCRSLNDV----QKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i-P---Ia~-dE~~~~~~~~----~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.|+.+..|=+++. |.+.+..-.+.+++ .+. - |+. .-..++++.+ +++.+. .++.|.+|=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~-Gad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEM-GCDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEeCCcc-c
Confidence 88888877666666664 33434332222222 222 1 111 2345676654 444444 47888886554 5
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 340 ---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 ---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
...+.+++...+ +.++++.+|+-...|++.+.
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an 214 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASIC 214 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHH
Confidence 344556655544 45899999987666665544
No 124
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.08 E-value=56 Score=35.52 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A-~~~l~ 268 (427)
+.+++...++.+.+.||..+-+--|.. -+.+.++++.+|+..|+..|..=+.| +|+ ++++ ..+++
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 678888889899889999999855531 25789999999998888777543343 354 4555 35667
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe----EEe-cCCCCCHHHH----HHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----VVA-DESCRSLNDV----QKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP----Ia~-dE~~~~~~~~----~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.++...-|=.++. |.+.+....+.++ +.+.- |+. +...++...+ +.+.+. .+|.|.++=+. |
T Consensus 105 ~a~~~Gid~~rifd~ln--d~~~~~~ai~~ak-~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~-Gad~i~i~Dt~-G 179 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMN--DPRNLETALKAVR-KVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM-GVDSLCIKDMA-G 179 (593)
T ss_pred HHHhcCCCEEEEeeeCC--cHHHHHHHHHHHH-HcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc-CCCEEEECCCC-C
Confidence 77777766556667765 4454444333333 23432 332 2334454443 344444 57888887655 4
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 340 ---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 ---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
...+.++++..+ +.++++-+|+-..+|++.+.
T Consensus 180 ~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An 215 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215 (593)
T ss_pred CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHH
Confidence 445566655544 45899999987666666554
No 125
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=85.79 E-value=26 Score=34.37 Aligned_cols=132 Identities=15% Similarity=0.131 Sum_probs=82.1
Q ss_pred eeeeeeecCC-CHHHHHHHHHHHhhcCCcEEEEeccC-C--------------chhhHHHHHHHHHhC--C-CcEEEEeC
Q 014285 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-N--------------ITADFDVLQAIHAVH--P-HCSFILDA 254 (427)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKiG~-~--------------~~~d~~~l~~ir~~~--~-~~~L~vDA 254 (427)
.|+..++... +++++.+.+++..+.|+..|-+.+|. + ++.=.+.++++|+.. | -++|+.|
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~- 178 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN- 178 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC-
Confidence 3444555444 88888888877766799999998873 1 122234556666632 3 2444432
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceE----------------eCCCC-----------------CCChhhHHHHHHhhcc
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLF----------------EQPVH-----------------RDDWSGLHDVSNFARD 301 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~i----------------EqP~~-----------------~~d~~~~~~L~~~~r~ 301 (427)
.++..++++.+.+.+.. .| +.|.. +-.|+..+++++
T Consensus 179 -----~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~---- 247 (299)
T cd02940 179 -----ITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR---- 247 (299)
T ss_pred -----chhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH----
Confidence 23456677777766543 22 22321 111455556654
Q ss_pred cc--CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 302 TY--GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 302 ~~--~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.. .+||...=-+.+.+|+.+++..+ ++.+|+=-..+
T Consensus 248 ~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~ 285 (299)
T cd02940 248 APEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVM 285 (299)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeec
Confidence 56 79999999999999999999865 77888755433
No 126
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.71 E-value=20 Score=35.91 Aligned_cols=141 Identities=10% Similarity=0.006 Sum_probs=69.3
Q ss_pred HHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+=.-..+++++..+.++.+.+++....+|-+..-.-..+.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 173 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDD 173 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHH
Confidence 44455666665554443 12223344555555555443332222345666666777777666655446666665444455
Q ss_pred HHHHHHhhccccC--CeEEecCCC-CC--HHHHHHHHHcCCCcEEEeCCCCccH------HHHHHHHHHHHHcCCc
Q 014285 292 LHDVSNFARDTYG--ISVVADESC-RS--LNDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (427)
Q Consensus 292 ~~~L~~~~r~~~~--iPIa~dE~~-~~--~~~~~~ll~~~a~~~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (427)
+.++.+.+++..+ +||...=+- .+ ......+++.+ ++. +|.+..|+ ..+..++...+..|+.
T Consensus 174 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 174 VRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 5554444444443 566442110 11 11123445544 443 66666542 2345556666665544
No 127
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.63 E-value=36 Score=32.98 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDAN----EGYT--SEE-AVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN----~~~s--~~~-A~~~l~ 268 (427)
+.++..+.+..+.+.||..|-+-.+.. -+.|.+.++.+++..++.+|..=++ -+|. |.+ -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 567777788888899999988876531 3567899999999776655542222 1221 222 234566
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe-----cCCCCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-----DESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~-----dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
...+.++....|--|+. +++.+.+..+.++ ..+.-+.. +-+..+...+ +++.+. .++.|.+.=+. .
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak-~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~l~DT~G~ 174 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVK-KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM-GADSICIKDMAGL 174 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHH-HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCC
Confidence 66666655334555654 5665655544443 23443332 2244555544 334444 47777775443 3
Q ss_pred c-HHHHHHHHHHHHH-cCCcEEEcccCchhHHHH
Q 014285 339 G-VLGTLQIIKATRK-SGLHLMIDGMIETRLATG 370 (427)
Q Consensus 339 G-i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~ 370 (427)
+ .....++++..++ .++++-+|+-...|++.+
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~a 208 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVA 208 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHH
Confidence 3 4556666666554 478888887554444443
No 128
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=85.63 E-value=35 Score=34.73 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE-----eCCC--CCCChhhHHHHHHhhccccC
Q 014285 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-----EQPV--HRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 232 ~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i-----EqP~--~~~d~~~~~~L~~~~r~~~~ 304 (427)
+.-.++++++|+.+--+.+++ ++..+.++++.+.+.+.....+ +|=- ...+|..+.++.+ ..+
T Consensus 119 ~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~----~~~ 188 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG----ELD 188 (369)
T ss_pred HHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH----HCC
Confidence 444567777777542344444 3346677888887777652121 1100 1346778888875 578
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
+||..+. +.+..+.+++++. .+|.|+
T Consensus 189 IPVI~G~-V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 189 VPVIAGG-VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred CCEEEeC-CCCHHHHHHHHHc-CCCEEE
Confidence 9998743 8899999999986 488877
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.60 E-value=20 Score=34.07 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHhhcCCcEEEEeccCC---------------chhhHHHHHHHHHhCCCcEEEE-eCCC-CCCHHHHHHHHHHhhhC
Q 014285 211 LASKYCKLGFSTLKLNVGRN---------------ITADFDVLQAIHAVHPHCSFIL-DANE-GYTSEEAVEVLGKLNDM 273 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~~---------------~~~d~~~l~~ir~~~~~~~L~v-DAN~-~~s~~~A~~~l~~L~~~ 273 (427)
.++.+.+.|+..+-+-+..+ ++.-.+.++.+++.+-++.+.+ |+.. ..++++..++++.+.++
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 45555667777777666432 2223334455555565666666 5554 37888888888888888
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEe
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~ 309 (427)
+....++-+-.-.-..+.+.++-+.+++..+ +||..
T Consensus 159 g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 159 GADEISLKDTVGLATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred CCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 7653233332222223344444333333444 55543
No 130
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.47 E-value=14 Score=37.14 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=71.3
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeC--------------CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~ 320 (427)
|..|+.++.+++++.|.+.|+. +||= |....+++.++++.+.++ ++.+-..+.=...+..+++
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHH
Confidence 4457999999999999999985 8998 444567787877765322 2333323322234678888
Q ss_pred HHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 321 KVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 321 ~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
.+.+.+ ++.|.+-....=...+.+.++.|++.|..+...-
T Consensus 95 ~a~~~g-vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 95 AAYDAG-ARTVRVATHCTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHCC-CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEE
Confidence 888764 7887764332215567899999999999886543
No 131
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.39 E-value=7.7 Score=36.28 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.-++++|++.++.|.+.+++ .||=++...+. +.+++|++. ...+-|-.| .+.+.++++.+++.+ .+++.- |
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~---~p~~~IGAG-TVl~~~~a~~a~~aG-A~Fivs-P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE---VPEALIGAG-TVLNPEQLAQAIEAG-AQFIVS-P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH---CCCCEEEEe-eccCHHHHHHHHHcC-CCEEEC-C
Confidence 34789999999999999986 89999875543 345666542 234556555 778889999999987 565443 2
Q ss_pred CCccHHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 336 AKFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
|+.+ ++++.|++++++++++++.-+
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~Tpt 119 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPS 119 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHH
Confidence 2222 788889999999999987533
No 132
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.22 E-value=9.3 Score=36.44 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=82.0
Q ss_pred eeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCC------CCCH---HHHHHHHH
Q 014285 198 ITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE------GYTS---EEAVEVLG 268 (427)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~------~~s~---~~A~~~l~ 268 (427)
...++.+.+++ +++.+.|...+ =+|.-.-+|.+.++.+.+.+.++.+.+|+.. +|.. -+..++++
T Consensus 78 vGGGIrs~e~~----~~~l~~Ga~rv--vigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~ 151 (241)
T PRK14114 78 IGGGIRSLDYA----EKLRKLGYRRQ--IVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLK 151 (241)
T ss_pred EecCCCCHHHH----HHHHHCCCCEE--EECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHH
Confidence 34455666554 45667787643 4564333566778888544567899999843 3421 23466777
Q ss_pred HhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc-----CCCcEEEeCCCC
Q 014285 269 KLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-----NLASVVNIKLAK 337 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~-----~a~~~i~lk~~~ 337 (427)
.++++++. ..|=--+.. -|++.++++++ .+++||.+.=-+.+..|+.++.+. +.++.+.+=-+.
T Consensus 152 ~~~~~g~~-~ii~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 152 RLKEYGLE-EIVHTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred HHHhcCCC-EEEEEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 77777653 333333322 36777888875 578999888888999999988875 225655543333
Q ss_pred -cc
Q 014285 338 -FG 339 (427)
Q Consensus 338 -~G 339 (427)
-|
T Consensus 227 ~~g 229 (241)
T PRK14114 227 LEG 229 (241)
T ss_pred HCC
Confidence 36
No 133
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.73 E-value=32 Score=34.37 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhcCC--cEEEEeccC-CchhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHhhh---CCCCC--
Q 014285 207 EASELASKYCKLGF--STLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLND---MGVIP-- 277 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf--~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~---~~l~~-- 277 (427)
+..+++++++++|. ..+-+.+-. +.+.-.+.++.||+.+|++.+++ |.- |.++|....+.=.+ .+.+.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHHcCcCEEEECCCCCc
Confidence 34577888889966 898887753 34556677999999999988888 766 78887666553111 01000
Q ss_pred ceEeCCC---CCCChh--hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 278 VLFEQPV---HRDDWS--GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 278 ~~iEqP~---~~~d~~--~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
..+|++. ...+|. .++++++ ...+||.+|--+.+..|+.+++..+ ++.+.+--.
T Consensus 174 ~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG~~ 232 (326)
T PRK05458 174 VCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIGSL 232 (326)
T ss_pred ccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEechh
Confidence 1246544 233443 3566654 4579999999999999999999885 677766533
No 134
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=84.56 E-value=16 Score=36.35 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=77.2
Q ss_pred eeeeeeecCCC-------HHHHHHHHHHHhhcCCcEEEEeccC----------CchhhHHHHHHHHHhCC----CcEEEE
Q 014285 194 LSTAITIPAVS-------PAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (427)
Q Consensus 194 ip~~~~i~~~~-------~~~~~~~~~~~~~~Gf~~iKlKiG~----------~~~~d~~~l~~ir~~~~----~~~L~v 252 (427)
+|+..++...+ .++..+.+++. ..+...+-+.++. +.+.-.+.++++|+... ++.+.|
T Consensus 129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~-~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~v 207 (327)
T cd04738 129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKL-GPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLV 207 (327)
T ss_pred CeEEEEEeCCCCCcccccHHHHHHHHHHH-HhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEE
Confidence 45555554432 45555555554 2346677777752 22334466788887421 333443
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEe--C----------CCCCC-------------ChhhHHHHHHhhcccc--CC
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFE--Q----------PVHRD-------------DWSGLHDVSNFARDTY--GI 305 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iE--q----------P~~~~-------------d~~~~~~L~~~~r~~~--~i 305 (427)
=-.-.++.++..++++.+++.++. +|. - |.... .++..+++++ .. .+
T Consensus 208 Kl~~~~~~~~~~~ia~~l~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~----~~~~~i 281 (327)
T cd04738 208 KIAPDLSDEELEDIADVALEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYK----LTGGKI 281 (327)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHH----HhCCCC
Confidence 334446777888888999887764 443 1 11100 1233344443 34 68
Q ss_pred eEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 306 SVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 306 PIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
||..-=-+.+..|+.+++..+ +|.+++=
T Consensus 282 pIi~~GGI~t~~da~e~l~aG-Ad~V~vg 309 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAG-ASLVQLY 309 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcC-CCHHhcc
Confidence 888877888888988888755 7776654
No 135
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=84.47 E-value=11 Score=36.40 Aligned_cols=103 Identities=14% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeC--CC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC---Cc
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL---AS 329 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a---~~ 329 (427)
..|+.++.+++++.|.+.|+. .||= |. .+++++.++.+.+. ..+..+..= .-.+..+++.+++.+. ++
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l-~r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGL-ARAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEE-ccCCHhhHHHHHHhCCCCCCC
Confidence 357899999999999999986 8997 54 45667777777642 234554421 0135677888877653 66
Q ss_pred EEEeCCCC----------c---c-HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 330 VVNIKLAK----------F---G-VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 330 ~i~lk~~~----------~---G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
.|.+=.+. . - +....+.++.|++.|+.+.++++..
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 137 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDA 137 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecC
Confidence 66653221 1 1 4557789999999999999887643
No 136
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=84.29 E-value=57 Score=34.13 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEeC---C-CCCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDA---N-EGYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vDA---N-~~~s--~~~A-~~~l~ 268 (427)
+.+++.+.++.+.+.||..|-+--|..+ +.+.++++.+++..++..+..=+ | -+|+ ++++ .++++
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence 5788888899998999999999544322 34788999999987877765322 2 2442 3443 35666
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe----EE-ecCCCCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----VV-ADESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP----Ia-~dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
+..+.++...-|=.++. +...+.+..+.++ +.+.- |+ .+...++...+ +++.+.+ +|.|.++=+- +
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G~ 179 (448)
T PRK12331 104 KSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAGI 179 (448)
T ss_pred HHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCCC
Confidence 66666765344555553 3333443333332 23432 21 12234454433 4555554 7788776544 2
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
. ...+.+++...+ +.++++.+|+-...|++.+.
T Consensus 180 l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN 214 (448)
T PRK12331 180 LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMT 214 (448)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHH
Confidence 3 455666666554 45899999986666655543
No 137
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=83.71 E-value=21 Score=33.01 Aligned_cols=142 Identities=15% Similarity=0.257 Sum_probs=95.7
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++.+-+-.-. ..-.+.++.+++.+|+ +.|=|-.-.|.++|.+.++.=.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~aGA~------F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIAAGAQ------F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHHHT-S------E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHHcCCC------E
Confidence 445678888999999999999999988854 3446778888888887 55677777888887776664333 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-c-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-G-i~~~~~~~~~A~~~gi~~ 357 (427)
+=-|.- -+++.+.|+ +.++|..-| +.|+.++.++++.+ ++++-+=|... | ..-...+..- --++++
T Consensus 84 ivSP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p--~p~~~~ 151 (196)
T PF01081_consen 84 IVSPGF---DPEVIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP--FPDLPF 151 (196)
T ss_dssp EEESS-----HHHHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT--TTT-EE
T ss_pred EECCCC---CHHHHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc--CCCCeE
Confidence 666654 245566665 578888875 67999999999876 78988888664 7 4443333322 237899
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 152 ~ptGGV 157 (196)
T PF01081_consen 152 MPTGGV 157 (196)
T ss_dssp EEBSS-
T ss_pred EEcCCC
Confidence 988744
No 138
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.69 E-value=25 Score=35.79 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=47.5
Q ss_pred ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC---------Cc--cH---HHHHHHHHHHHHc
Q 014285 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA---------KF--GV---LGTLQIIKATRKS 353 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~---------~~--Gi---~~~~~~~~~A~~~ 353 (427)
++..+.++.+ +.++||..+. +.+.++.+++++. .+|+|.+-.. .. |+ +...++++.++++
T Consensus 175 ~~~~i~~~ik----~~~ipVIaG~-V~t~e~A~~l~~a-GAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 175 EPLNLKEFIY----ELDVPVIVGG-CVTYTTALHLMRT-GAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDY 248 (368)
T ss_pred CHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHc-CCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHh
Confidence 5667777765 4689988744 8899999999985 5888765411 11 21 1223333333433
Q ss_pred -------CCcEEEcccCchhHHHHH
Q 014285 354 -------GLHLMIDGMIETRLATGF 371 (427)
Q Consensus 354 -------gi~~~~~s~~es~ig~~a 371 (427)
+++++-.+-+.++-..+.
T Consensus 249 l~~~~~~~vpVIAdGGI~~~~diak 273 (368)
T PRK08649 249 LDETGGRYVHVIADGGIGTSGDIAK 273 (368)
T ss_pred hhhhcCCCCeEEEeCCCCCHHHHHH
Confidence 689988776655433333
No 139
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=83.51 E-value=13 Score=36.47 Aligned_cols=118 Identities=12% Similarity=0.222 Sum_probs=77.4
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E----e----CCCCC-CHHHHHHHHHHhhh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D----ANEGY-TSEEAVEVLGKLND-- 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v----D----AN~~~-s~~~A~~~l~~L~~-- 272 (427)
+.+.++.||+.+-+.... ++++.+++.+.+.+. += +.+|- | | ...-| +|++|.+|.++..-
T Consensus 93 i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~ 172 (285)
T PRK07709 93 CKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDC 172 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCE
Confidence 345678999999999775 788999988887762 21 22221 1 1 11126 59999999987531
Q ss_pred ----C-CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ----M-GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ----~-~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
. ..|=.|-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+...
T Consensus 173 LAvaiGt~HG~Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~G-i~KiNi~T~ 235 (285)
T PRK07709 173 LAPALGSVHGPYKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLG-TSKINVNTE 235 (285)
T ss_pred EEEeecccccCcCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeChH
Confidence 1 0121244445 457888888875 6789997754 667778899999876 444666654
No 140
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=83.38 E-value=14 Score=35.71 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHH----HHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC-CCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQ----AIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMG-VIP 277 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~----~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~-l~~ 277 (427)
.+++.+.+.+++.+++|-..+-+-.+...+++.+++. .+++. -++.|.||....=..+.|++. ..... +.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~-~~~plsIDT~~~~v~eaaL~~---~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEV-VDVPLCIDSPNPAAIEAGLKV---AKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHh-CCCCEEEeCCCHHHHHHHHHh---CCCCCEEEe
Confidence 4678888899999999999998888766566666543 33332 268899997554344444443 22211 111
Q ss_pred ceEeCCCCCCChhhHHHHHHhhccccCCeEE---ecCC-CC-CH----HHHH----HHHHcCCC--cEEEeCCCCc--c-
Q 014285 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVV---ADES-CR-SL----NDVQ----KVMQENLA--SVVNIKLAKF--G- 339 (427)
Q Consensus 278 ~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa---~dE~-~~-~~----~~~~----~ll~~~a~--~~i~lk~~~~--G- 339 (427)
.+-|+ +..+.+..+++ +.+.|+. .|+. .. +. ..++ .+.+.+ + +=+.+||... |
T Consensus 98 Is~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G-I~~~~IilDPgi~~~~~ 168 (261)
T PRK07535 98 VSAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG-IPPEDIYIDPLVLPLSA 168 (261)
T ss_pred CCCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC-CCHhHEEEeCCCCcccC
Confidence 13332 22456667665 4666665 3321 11 11 2222 233333 3 4588999664 3
Q ss_pred ----HHHHHHHHHHHHHc--CCcEEEcc
Q 014285 340 ----VLGTLQIIKATRKS--GLHLMIDG 361 (427)
Q Consensus 340 ----i~~~~~~~~~A~~~--gi~~~~~s 361 (427)
....++.++..++. |.++.++-
T Consensus 169 ~~~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 169 AQDAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666766665 89998764
No 141
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.33 E-value=39 Score=31.41 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCcEEEEeccC--Cc--hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC-----ceE
Q 014285 210 ELASKYCKLGFSTLKLNVGR--NI--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP-----VLF 280 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~--~~--~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~-----~~i 280 (427)
+++++..+.|-..+-+-... .+ ++..+.++.+++. +++.+.++.+ +.+++.+ +.+.+... ...
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~~----a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGLA----AQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHHH----HHHcCCCEEEcCCcee
Confidence 34566778898876665432 12 4455677888876 7888998876 6777643 33333320 012
Q ss_pred eCC---CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 281 EQP---VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 281 EqP---~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
+.. ....+++.++++++ ..++||...=-+.+..++.++++.+ +|.+.+=-..+
T Consensus 151 t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~iGsai~ 206 (221)
T PRK01130 151 TEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVVGGAIT 206 (221)
T ss_pred ecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHhc
Confidence 211 12234566666664 5689999888888999999999876 78877654333
No 142
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=82.92 E-value=10 Score=37.11 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=47.3
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+...+++.++.+ ++.|.+|-|..- +..+++++++|+++|+.+-
T Consensus 72 ~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 72 TYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 6789999874 556788889999885 899999999873 7789999999999999884
No 143
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.82 E-value=13 Score=36.46 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=76.9
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLN 271 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~ 271 (427)
.+++.++.||+.+-+.-.. ++++.++.-+.+.+. += +.+|- | +.+ ..| +|++|.+|+++..
T Consensus 89 ~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 89 DIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred HHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHC
Confidence 3555678999999999764 788888888777662 21 12221 1 111 225 5999999998632
Q ss_pred ----------hCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 272 ----------DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 272 ----------~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
-.|+ |-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+..
T Consensus 169 vD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~G-i~KiNi~T 233 (284)
T PRK09195 169 IDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLG-ICKVNVAT 233 (284)
T ss_pred cCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcC-CeEEEeCc
Confidence 1332 55555 568899999976 5789987754 667778889998876 44456654
No 144
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.60 E-value=32 Score=34.56 Aligned_cols=141 Identities=9% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+=--..+++++..+.++.+.+++....+|-+-.-.-..+.
T Consensus 95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred HHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 34445666665555443 12223344555555554444322222455666666666666666654445555554444444
Q ss_pred HHHHHHhhcccc--CCeEEecCCC-CC--HHHHHHHHHcCCCcEEEeCCCCccH------HHHHHHHHHHHHcCCc
Q 014285 292 LHDVSNFARDTY--GISVVADESC-RS--LNDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (427)
Q Consensus 292 ~~~L~~~~r~~~--~iPIa~dE~~-~~--~~~~~~ll~~~a~~~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (427)
..++-+.+++.. ++||...=+- .+ ......+++.+ ++ ++|.+..|+ ..+..++...+..|+.
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-AT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CC--EEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 444444444344 4566442110 11 11124445544 34 466666542 2245555566655544
No 145
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=82.21 E-value=29 Score=36.26 Aligned_cols=101 Identities=8% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCC--CCCCHHHHHHHHHHhhhCCCCCceEeCCCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDAN--EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN--~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~ 285 (427)
.+.+++..+.|.+.|.+-... +.+.=.+.++.+++.|..+...+-.- ..++++...++++.+.+.+.+...|=+..-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG 178 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 445566667777776666654 22222223455555554433333221 245667777777777777766556666665
Q ss_pred CCChhhHHHHHHhhccccCCeEEe
Q 014285 286 RDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 286 ~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
--......+|.+.+++..++||..
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEE
Confidence 555566666665555556677755
No 146
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.89 E-value=15 Score=36.00 Aligned_cols=119 Identities=15% Similarity=0.301 Sum_probs=77.4
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEE----------EEeCCCC-C-CHHHHHHHHHHhh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF----------ILDANEG-Y-TSEEAVEVLGKLN 271 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L----------~vDAN~~-~-s~~~A~~~l~~L~ 271 (427)
.+.+.++.||+.+-+.-.. ++++.++..+.+.+. += +.+| ..|.+.. | +|++|.+|.++..
T Consensus 89 ~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tg 168 (284)
T PRK12737 89 DIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTG 168 (284)
T ss_pred HHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhC
Confidence 3455678899999998764 788888887777662 21 2222 1122222 6 5999999998642
Q ss_pred h------CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 272 D------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 272 ~------~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
- .| .|=.|-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+.-.
T Consensus 169 vD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~G-i~KiNi~T~ 234 (284)
T PRK12737 169 IDSLAVAIGTAHGLYKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLG-ICKVNVATE 234 (284)
T ss_pred CCEEeeccCccccccCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcH
Confidence 1 11 121244555 458888999976 5789987754 667778899998876 444666543
No 147
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=81.81 E-value=21 Score=33.85 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=94.9
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CC-cEEEEeCCC-------CC------
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PH-CSFILDANE-------GY------ 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~-~~L~vDAN~-------~~------ 258 (427)
||.....++.+.+++. ++...|-. |+-|+..-=.|-++++.+.+.| .+ +.+.+|+-. .|
T Consensus 75 iPltVGGGI~s~eD~~----~ll~aGAD--KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~g 148 (256)
T COG0107 75 IPLTVGGGIRSVEDAR----KLLRAGAD--KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHG 148 (256)
T ss_pred eeeEecCCcCCHHHHH----HHHHcCCC--eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecC
Confidence 5655556677877764 44556644 5555433335667888888764 44 677888743 33
Q ss_pred ----CHHHHHHHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 259 ----TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 259 ----s~~~A~~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
+--++++|+++.++.+-- +-+=--+.. -|++..+.++. ...+|+.+.=-.-++.++.+++....+
T Consensus 149 Gr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~DGtk~GyDl~l~~~v~~----~v~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 149 GREDTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKAGYDLELTRAVRE----AVNIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CCcCCCcCHHHHHHHHHHcCCc-eEEEeeecccccccCcCHHHHHHHHH----hCCCCEEecCCCCcHHHHHHHHHhcCc
Confidence 235688999999987642 222222222 25566666664 789999988888899999888877766
Q ss_pred cEEEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 329 ~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
|...----.+ |.....++-++..++|+++
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 6533222222 4333455566677788775
No 148
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.78 E-value=22 Score=34.74 Aligned_cols=117 Identities=11% Similarity=0.114 Sum_probs=75.3
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E-eC-------CCCC-CHHHHHHHHHHhhh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L-DA-------NEGY-TSEEAVEVLGKLND-- 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v-DA-------N~~~-s~~~A~~~l~~L~~-- 272 (427)
+++.++.||+.+-+.-.. ++++.++..+.+.+. += +.+|. | .. ...| +|++|.+|++...-
T Consensus 90 i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~ 169 (283)
T PRK07998 90 VKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDM 169 (283)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCe
Confidence 334568899999997654 678888888877762 21 22321 1 11 1124 69999999986531
Q ss_pred ----CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ----MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ----~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
+| .|=.|-. +.-|++.++++++ .+++|+.+.= |-.+.++++++++.+ +.=||+.-.
T Consensus 170 LAvaiGt~HG~Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~Te 231 (283)
T PRK07998 170 LAVSIGNVHGLEDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYK-VAKVNIASD 231 (283)
T ss_pred eehhccccccCCCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcC-CcEEEECHH
Confidence 11 1211322 5568899999976 6799987754 667778899999877 444666544
No 149
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=81.69 E-value=40 Score=31.40 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=79.4
Q ss_pred HHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC
Q 014285 236 DVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR 314 (427)
Q Consensus 236 ~~l~~ir~~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~ 314 (427)
+.++.+++.. ..+.+-|+ +.+.++.++.++.|.+..-. .+||=|....-++.+++|.+ .++++... .++
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~~-~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T-~V~ 110 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGGN-VVVKIPVTEDGLKAIKKLSE-----EGIKTNVT-AIF 110 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCCC-EEEEEcCcHhHHHHHHHHHH-----cCCceeeE-Eec
Confidence 4567777743 34555565 46788888888888766212 48999998655556666653 47777654 478
Q ss_pred CHHHHHHHHHcCCCcEEEeCCCCc------cHHHHHHHHHHHHHcCCc
Q 014285 315 SLNDVQKVMQENLASVVNIKLAKF------GVLGTLQIIKATRKSGLH 356 (427)
Q Consensus 315 ~~~~~~~ll~~~a~~~i~lk~~~~------Gi~~~~~~~~~A~~~gi~ 356 (427)
+..+.....+.+ ++|+.|-.+++ |+.-..++.++++++|++
T Consensus 111 s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 111 SAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD 157 (211)
T ss_pred CHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 888888888876 78999988773 366678999999999987
No 150
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=81.54 E-value=13 Score=36.30 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=47.5
Q ss_pred cccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 301 ~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
++.++||++.= ...+.+.+.+.++.+ ++.|.+|-|..= +..+++++++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 36789999874 456778889999986 899999999873 7779999999999999873
No 151
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=81.51 E-value=59 Score=32.75 Aligned_cols=152 Identities=23% Similarity=0.264 Sum_probs=99.3
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHh-C-C-CcEEEEe
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV-H-P-HCSFILD 253 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~-~-~-~~~L~vD 253 (427)
.-|+-..++.+|++.+.+.++-....+ +.|-+..|- +++---+.++++++. . | .+++|+=
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF 151 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 345556778889999877665554445 667776662 122224456777763 2 3 3444442
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceE-------eCC---CCCCChhhHHHHHHhhccccC-CeEEecCCCCCHHHHHHH
Q 014285 254 ANEGYTSEEAVEVLGKLNDMGVIPVLF-------EQP---VHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKV 322 (427)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~i-------EqP---~~~~d~~~~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~l 322 (427)
-+.++..++++.+++.+.. |+ ||= ..+-||+.++.+.+ ..+ +||.+.=++.++.|..+.
T Consensus 152 ----~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~ 221 (358)
T KOG2335|consen 152 ----VDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERC 221 (358)
T ss_pred ----CcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHH
Confidence 3467778888888887754 33 222 45568999999976 455 999999999999999999
Q ss_pred HHcCCCcEEEe------CCCCc-----cH--H-HHHHHHHHHHHcCC
Q 014285 323 MQENLASVVNI------KLAKF-----GV--L-GTLQIIKATRKSGL 355 (427)
Q Consensus 323 l~~~a~~~i~l------k~~~~-----Gi--~-~~~~~~~~A~~~gi 355 (427)
++.-.+|.|.. .|... +. . -..++..+|++++-
T Consensus 222 ~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 222 LKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 98556776653 22221 21 1 24678889999883
No 152
>PRK06801 hypothetical protein; Provisional
Probab=81.49 E-value=14 Score=36.32 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred cccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcE
Q 014285 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 301 ~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~ 357 (427)
++.++||++.= ...+...++++++.+ ++.|++|-+..- +..++++.++|+.+|+.+
T Consensus 71 ~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 71 ARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 36788998864 455777789999875 899999998762 667899999999999987
No 153
>PRK09234 fbiC FO synthase; Reviewed
Probab=80.96 E-value=9.8 Score=42.98 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhh----HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITAD----FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d----~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+++++.+.+++..+.|.+.|-+--|.+++.+ .+.+++|++.+|++.+- +||+.|-... ....++.
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~-----afsp~Ei~~~---a~~~Gl~--- 626 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH-----AFSPMEIVNG---AARLGLS--- 626 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE-----ecChHHHHHH---HHHcCCC---
Confidence 7889999999999999999999877654333 34578888888877663 4666553322 2222321
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (427)
+ -+.+++|++. .-..+|-. .+++.+. +++ -++.|.++....++++++.|++.|+++.-
T Consensus 627 ~--------~e~l~~LkeA--GLds~pgt-~aeil~d-~vr----------~~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 627 I--------REWLTALREA--GLDTIPGT-AAEILDD-EVR----------WVLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred H--------HHHHHHHHHh--CcCccCCC-chhhCCH-HHH----------hhcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 1 1344555431 11234421 2222221 222 12445565555778999999999999865
Q ss_pred ccc
Q 014285 360 DGM 362 (427)
Q Consensus 360 ~s~ 362 (427)
+.+
T Consensus 685 tmm 687 (843)
T PRK09234 685 TMM 687 (843)
T ss_pred ceE
Confidence 543
No 154
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=80.71 E-value=30 Score=33.42 Aligned_cols=134 Identities=15% Similarity=0.012 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHHhC-C-CcEEEEeCC---C-------CCC---HHHHHHHHHHhhh
Q 014285 210 ELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVH-P-HCSFILDAN---E-------GYT---SEEAVEVLGKLND 272 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~~~-~-~~~L~vDAN---~-------~~s---~~~A~~~l~~L~~ 272 (427)
+.++++.+.|...+=+---. +.+-|.+.++.+-+.+ + .+.+.+|+. + +|. .-++.+++.++.+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~ 174 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA 174 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH
Confidence 45677889998766553211 2223478888888764 5 488899985 4 231 1233444444444
Q ss_pred CCCCCceEeCC------CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC--CCcEEEeCCC--Ccc---
Q 014285 273 MGVIPVLFEQP------VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNIKLA--KFG--- 339 (427)
Q Consensus 273 ~~l~~~~iEqP------~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~--a~~~i~lk~~--~~G--- 339 (427)
.++. ..|=.= +.--|++.++++++ .+.+||.+.=-+.+..|++++.+.+ ...++.=|.- .-|
T Consensus 175 ~g~~-eii~TdI~rDGtl~G~d~el~~~l~~----~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~ 249 (262)
T PLN02446 175 AYCD-EFLVHGVDVEGKRLGIDEELVALLGE----HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLP 249 (262)
T ss_pred hCCC-EEEEEEEcCCCcccCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCcc
Confidence 3332 222222 22336778888886 6889998887889999999888764 3444444544 346
Q ss_pred HHHHHHHHH
Q 014285 340 VLGTLQIIK 348 (427)
Q Consensus 340 i~~~~~~~~ 348 (427)
+.++++|-+
T Consensus 250 l~ea~~~~~ 258 (262)
T PLN02446 250 YDDVVAWHK 258 (262)
T ss_pred HHHHHHHHh
Confidence 445666643
No 155
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.46 E-value=52 Score=30.99 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=98.5
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH----hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA----VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~----~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
+...++++..+.++.+.+.|++++-+-.-. ..-.+.++.+++ .+| ++.|=|-.-.|++++.+.++ .|.
T Consensus 21 vr~~~~~~a~~~~~al~~gGi~~iEiT~~t--p~a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a~~a~~----aGA 92 (222)
T PRK07114 21 FYHADVEVAKKVIKACYDGGARVFEFTNRG--DFAHEVFAELVKYAAKELP--GMILGVGSIVDAATAALYIQ----LGA 92 (222)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CcHHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHHHHHHH----cCC
Confidence 334688999999999999999999998853 234455666653 345 47788888899998766544 454
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHcC
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~g 354 (427)
. ||=-|.-. .++.+.|+ +.++|+.-| +.|+.++.++++.+ ++++-+=|.-. |..-...+..-- -+
T Consensus 93 ~--FiVsP~~~---~~v~~~~~----~~~i~~iPG--~~TpsEi~~A~~~G-a~~vKlFPA~~~G~~~ikal~~p~--p~ 158 (222)
T PRK07114 93 N--FIVTPLFN---PDIAKVCN----RRKVPYSPG--CGSLSEIGYAEELG-CEIVKLFPGSVYGPGFVKAIKGPM--PW 158 (222)
T ss_pred C--EEECCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECcccccCHHHHHHHhccC--CC
Confidence 3 77777653 34455554 578888876 67999999999986 68888888655 544333322222 47
Q ss_pred CcEEEcccC
Q 014285 355 LHLMIDGMI 363 (427)
Q Consensus 355 i~~~~~s~~ 363 (427)
+++++++-+
T Consensus 159 i~~~ptGGV 167 (222)
T PRK07114 159 TKIMPTGGV 167 (222)
T ss_pred CeEEeCCCC
Confidence 889998744
No 156
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=80.14 E-value=31 Score=32.58 Aligned_cols=126 Identities=21% Similarity=0.176 Sum_probs=78.9
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCCC--------CCHHHHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG--------YTSEEAV 264 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~--------~s~~~A~ 264 (427)
|+-...++.+.++ ++++.+.|.. |+=+|...-.+ +.++.+-+.++ .+-+.+|+... .++.+.+
T Consensus 80 ~v~vgGGir~~ed----v~~~l~~Ga~--~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~ 152 (233)
T cd04723 80 GLWVDGGIRSLEN----AQEWLKRGAS--RVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELL 152 (233)
T ss_pred CEEEecCcCCHHH----HHHHHHcCCC--eEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHH
Confidence 3334445566554 4456677743 44456544456 77877777654 58899999665 4577766
Q ss_pred HHHHHhhhCCCCCceEeC--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 265 EVLGKLNDMGVIPVLFEQ--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEq--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+.++.. --.++..-+.. -....|++.++++++ .+.+||..+=-+.+..+++++++.+ ++.+.+
T Consensus 153 ~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 217 (233)
T cd04723 153 RRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLG-ASGALV 217 (233)
T ss_pred HHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 666655 22222112211 112335677788875 5789998888899999999999876 555554
No 157
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=80.07 E-value=84 Score=33.11 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEE--eC-C-CCC--CHHHHH-HHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFIL--DA-N-EGY--TSEEAV-EVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~v--DA-N-~~~--s~~~A~-~~l~ 268 (427)
+.+++.+.++.+.+.||..|-+--|..+ +.+.++++.+++..++..+.. =+ | -+| -+++.+ .+++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 5788888899998999999999544322 357889999999877777754 22 3 244 245533 4566
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCC-----CCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES-----CRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~-----~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
...+.++...-|=.|+. |.+.+....+.++ +.+.-+...++ .++...+ +++.+.+ +|.|.++=+- +
T Consensus 103 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~G~ 178 (467)
T PRK14041 103 KVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMAGL 178 (467)
T ss_pred HHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCccCC
Confidence 66666765445555554 4555544433332 34555543332 2333333 4455554 7888876554 2
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
. ...+.+++...+ +.++++.+|+-...|++.+.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN 213 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLA 213 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHH
Confidence 2 445666665554 45899999986666655543
No 158
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=79.98 E-value=28 Score=33.69 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=40.6
Q ss_pred hcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHH
Q 014285 217 KLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFI-LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294 (427)
Q Consensus 217 ~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~-vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~ 294 (427)
+.|...+.+-+.. +++.-.+.++.+|+.+-.+.+. .|+- +++++...++++.+.+++....+|-+.+-.-..+.+.+
T Consensus 93 ~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~ 171 (266)
T cd07944 93 GSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKR 171 (266)
T ss_pred cCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHH
Confidence 4455554444332 2233333344444444333332 2222 25555555555555555544335555554444444444
Q ss_pred HHHhhccccC--CeEEe
Q 014285 295 VSNFARDTYG--ISVVA 309 (427)
Q Consensus 295 L~~~~r~~~~--iPIa~ 309 (427)
+.+.+++..+ +||..
T Consensus 172 lv~~l~~~~~~~~~i~~ 188 (266)
T cd07944 172 IISLLRSNLDKDIKLGF 188 (266)
T ss_pred HHHHHHHhcCCCceEEE
Confidence 4443333333 55543
No 159
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.98 E-value=18 Score=35.25 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=47.1
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+...+.+.++.+ ++.|.+|.|..= +..+++++++|++.|+.+-
T Consensus 67 ~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 67 RASVPVALHLDHGSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5788998874 445788889999986 999999999872 7789999999999999874
No 160
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.94 E-value=24 Score=34.60 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=47.1
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+..+||++.= ...+.+..+++++.+ ++.|.+|.|..- +..+++++++|+++|+.+-
T Consensus 72 ~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 72 QYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 6789999874 555788889999986 899999999873 7779999999999998773
No 161
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=79.44 E-value=13 Score=34.54 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeC---CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQ---PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq---P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.+++++..++...+.++++..++|. .....+.+-++++++ .+.+|+..+=-+.+.++++++++.+ +|.+++
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 5789999999999988888779998 444456666777765 5789999999999999999998776 677654
No 162
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=79.30 E-value=27 Score=33.57 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=53.7
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
++...+.|...+.+-... +.+.-.+.++.+++.|..+.+.+ |+ ..++++...++++.+.+.+....+|=+-+-.-..
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P 169 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS-HMASPEELAEQAKLMESYGADCVYVTDSAGAMLP 169 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCH
Confidence 344456677776665543 22222334555555555444443 44 5577888788888887776654455555544444
Q ss_pred hhHHHHHHhhccccCC-eEEe
Q 014285 290 SGLHDVSNFARDTYGI-SVVA 309 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~i-PIa~ 309 (427)
+.++++.+.+++..+. ||..
T Consensus 170 ~~v~~lv~~l~~~~~~~~l~~ 190 (263)
T cd07943 170 DDVRERVRALREALDPTPVGF 190 (263)
T ss_pred HHHHHHHHHHHHhCCCceEEE
Confidence 5555555544444443 5543
No 163
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=79.29 E-value=22 Score=34.85 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=75.9
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E----e---C-CCCC-CHHHHHHHHHHhhh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D---A-NEGY-TSEEAVEVLGKLND-- 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v----D---A-N~~~-s~~~A~~~l~~L~~-- 272 (427)
+++.++.||+.+-+.... ++++.+++-+.+.+. +- +.+|- | | . +.-| +|++|.+|+++..-
T Consensus 93 i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~ 172 (286)
T PRK08610 93 CKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDA 172 (286)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCE
Confidence 345678899999999775 788888888777662 21 22221 1 1 1 1226 59999999986321
Q ss_pred ----CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ----MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ----~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
+| .|=.|-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+...
T Consensus 173 LAvaiGt~HG~Y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~G-I~KiNi~T~ 235 (286)
T PRK08610 173 LAPALGSVHGPYKGEP--KLGFKEMEEIGL----STGLPLVLHGGTGIPTKDIQKAIPFG-TAKINVNTE 235 (286)
T ss_pred EEeeccccccccCCCC--CCCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHCC-CeEEEeccH
Confidence 11 121243444 457888888875 5789997754 666778889998876 434566543
No 164
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=79.20 E-value=18 Score=36.73 Aligned_cols=99 Identities=16% Similarity=0.295 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeC--CCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
-.|+.++-+++++.|.+.|+. +||= |.. +++++.++++.+. .....|+.- .-.+..+++.+++.+ ++.+.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~v~~~-~r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQE---GLNAEICSL-ARALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHhc---CCCcEEEEE-cccCHHHHHHHHHcC-cCEEE
Confidence 357899999999999999986 8997 554 4556666766642 233444421 125678899888876 56666
Q ss_pred e--CC---------CC--cc-HHHHHHHHHHHHHcCCcEEEcc
Q 014285 333 I--KL---------AK--FG-VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 333 l--k~---------~~--~G-i~~~~~~~~~A~~~gi~~~~~s 361 (427)
+ .. .+ -. +..+.+.++.|+++|+.+.++-
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 132 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA 132 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 5 11 11 12 4567789999999999987764
No 165
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=79.09 E-value=23 Score=34.65 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=45.5
Q ss_pred ccC-CeEEec-CCCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYG-ISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~-iPIa~d-E~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.+ +||++. .+..+.+.+++.++.+ ++.|++|.+... +..+.++.++|+++|+.+.
T Consensus 71 ~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 71 RMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 566 899987 4555777788899875 899999999885 5568999999999998764
No 166
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=79.07 E-value=21 Score=34.99 Aligned_cols=115 Identities=15% Similarity=0.243 Sum_probs=77.0
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhh-
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLN- 271 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~- 271 (427)
+.+.++.||+.+-+.-.. ++++.++..+.+.+. += +.+|- | +.+ ..| +|++|.+|+++..
T Consensus 88 i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 167 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGV 167 (282)
T ss_pred HHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCc
Confidence 455678899999999775 788888888877662 21 22221 1 111 125 5999999998642
Q ss_pred ---------hCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 272 ---------DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 272 ---------~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
-.|+ |-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+...
T Consensus 168 D~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~----~~~iPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~ 232 (282)
T TIGR01858 168 DSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE----VVDVPLVLHGASDVPDEDVRRTIELG-ICKVNVATE 232 (282)
T ss_pred CEEecccCccccC---cCCCC--ccCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcC-CeEEEeCcH
Confidence 1332 55555 458999999976 6789987754 667778899998876 444666543
No 167
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.07 E-value=29 Score=34.85 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeC--------------CCCCCChhhHHHHHHhhccccCCeEE--ecCCCCCHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVV--ADESCRSLND 318 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------P~~~~d~~~~~~L~~~~r~~~~iPIa--~dE~~~~~~~ 318 (427)
+..|+.++.+++++.|.+.|+. .||= |....+++.++.++.. ..+..++ +.=...+..+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHH
Confidence 4567999999999999999985 8987 2223456777777542 2234443 3323446788
Q ss_pred HHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc
Q 014285 319 VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 319 ~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (427)
++.+.+.+ ++.+.+-. .+. ...+.+.++.|+++|..+...-
T Consensus 94 l~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 94 LKMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 88888764 78776543 234 5668999999999999987643
No 168
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.01 E-value=16 Score=35.78 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=47.1
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+.+.+.+.++.+ ++.|.+|.|..- +..+++++++|+++|+.+-
T Consensus 72 ~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 72 KYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 6789999874 455678889999985 889999999873 7779999999999999874
No 169
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=78.54 E-value=30 Score=33.55 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHhhhCCCCCceEeCCCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA--NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDA--N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~ 285 (427)
.+.++...+.|...+.+-... +++.-.+.++.+|+.|-.+...++. -..++++...++++.+.+++....+|=+.+-
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG 173 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 344555556777776665443 3333344455555556554444442 2456777777888887777765456666665
Q ss_pred CCChhhHHHHHHhhccccCCeEEe
Q 014285 286 RDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 286 ~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
.-..+.+.++-+.+++..++||..
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEE
Confidence 555555555555444455566654
No 170
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=78.19 E-value=42 Score=35.63 Aligned_cols=107 Identities=15% Similarity=0.289 Sum_probs=71.7
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC----ChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHH
Q 014285 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD----DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKV 322 (427)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~----d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~l 322 (427)
-+|+|-+--+-++++ ++.++.|-+.++. .||=....+ .++..++|++ .. ++||.++ .+.+.++.+.+
T Consensus 228 GrL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~ 299 (495)
T PTZ00314 228 GQLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNL 299 (495)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHH
Confidence 355554433334444 7888888888875 677444322 2345666654 33 6899887 78899999999
Q ss_pred HHcCCCcEEEeC--CC---------Ccc---HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 323 MQENLASVVNIK--LA---------KFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 323 l~~~a~~~i~lk--~~---------~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
++.+ +|+|.+- +. -+| ++...++++.|++.|++++..+-.
T Consensus 300 ~~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 300 IDAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred HHcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 9876 7887653 21 134 445578888999999999995544
No 171
>PRK12999 pyruvate carboxylase; Reviewed
Probab=77.90 E-value=1.5e+02 Score=34.92 Aligned_cols=163 Identities=13% Similarity=0.192 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHhhc--CCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHHH-HH
Q 014285 204 SPAEASELASKYCKL--GFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EV 266 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~--Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A~-~~ 266 (427)
+.+++...++.+-+. ||..+-+-.|.. -+.+.++++.+|+..|+..|..=..+ +|+ +++.. ++
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 467788888888888 999998887742 24679999999998887766544433 454 34444 45
Q ss_pred HHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC----CeEEec-------CCCCCHHHH----HHHHHcCCCcEE
Q 014285 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG----ISVVAD-------ESCRSLNDV----QKVMQENLASVV 331 (427)
Q Consensus 267 l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~----iPIa~d-------E~~~~~~~~----~~ll~~~a~~~i 331 (427)
++...+.++.+.-|=+++. |.+.|....+.+++. + +-|+.- +..+++..+ +++.+. .++.|
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~-Ga~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA-GAHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc-CCCEE
Confidence 8888887776555666665 456565554444332 3 223221 222455433 445555 47888
Q ss_pred EeCCCCcc---HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 332 NIKLAKFG---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 332 ~lk~~~~G---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
.+|=+- | ...+.+++...+ +.++++.+|+-..+|++.+.
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an 751 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLAT 751 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHH
Confidence 887655 5 344566665554 45899999987666665554
No 172
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=77.84 E-value=23 Score=34.59 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=45.7
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+.+.++++++.+ ++.||+|-+... +..++++.++|+++|+++-
T Consensus 72 ~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 72 QAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5778888763 456777888999875 899999998874 5668999999999999874
No 173
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=77.45 E-value=49 Score=29.02 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=67.7
Q ss_pred HHHHhhcCCcEEEEeccCC--chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC-----CceEeCCC
Q 014285 212 ASKYCKLGFSTLKLNVGRN--ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI-----PVLFEQPV 284 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~~--~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP~ 284 (427)
++...+.|+..+-+..+.. ++...+.++++++..+++.+.+..+.....+++. +.+.+.. ..+.++..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----HHHcCCCEEEEcCCcCCCCC
Confidence 4566778999998887642 2446778899998767777777666544433331 3333322 11222222
Q ss_pred CCCCh---hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 285 HRDDW---SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 285 ~~~d~---~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
...+. ...+.+. ...++||..+=-+.+..++.++++.+ +|.+.+
T Consensus 152 ~~~~~~~~~~~~~~~----~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~v 198 (200)
T cd04722 152 RDAVPIADLLLILAK----RGSKVPVIAGGGINDPEDAAEALALG-ADGVIV 198 (200)
T ss_pred ccCchhHHHHHHHHH----hcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEe
Confidence 11111 1222232 35789999888888878898888874 777654
No 174
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=77.42 E-value=1.1e+02 Score=33.12 Aligned_cols=165 Identities=15% Similarity=0.223 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEe---CCC-CC--CHHHHH-HHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILD---ANE-GY--TSEEAV-EVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vD---AN~-~~--s~~~A~-~~l~ 268 (427)
+.+++.+.++.+.+.||..|-+--|..+ +.+.++++.+|+..++..+..= .|. +| -++++. .+++
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 5788888899999999999998644322 4578899999997777766543 231 34 245543 4667
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec--CC---CCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ES---CRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d--E~---~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
...+.++...-|=.++. |.+.+....+.++ +.+.-+... .. .++...+ +++.+.+ +|.|.++=+- .
T Consensus 99 ~a~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G-ad~I~i~Dt~G~ 174 (582)
T TIGR01108 99 KAVENGMDVFRIFDALN--DPRNLQAAIQAAK-KHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG-VDSICIKDMAGI 174 (582)
T ss_pred HHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCC
Confidence 66666665334555554 3444444333332 234444332 11 1344433 4455554 7888876554 2
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGFA 372 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a~ 372 (427)
. ...+.++++..+ ..++++-+|+-..+|++.+.+
T Consensus 175 ~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~ 210 (582)
T TIGR01108 175 LTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMAL 210 (582)
T ss_pred cCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHH
Confidence 2 445666665554 458899999876676666543
No 175
>PRK06801 hypothetical protein; Provisional
Probab=77.29 E-value=56 Score=32.04 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=74.4
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CCCcEEEEeC--------------CCCC-CHHHHHHHHHHhh
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HPHCSFILDA--------------NEGY-TSEEAVEVLGKLN 271 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~~~~L~vDA--------------N~~~-s~~~A~~~l~~L~ 271 (427)
+++.++.||+.+.+.-.. ++++.++..+.+++. +=+++.-+.+ ...+ ++++|.++.++..
T Consensus 90 i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tg 169 (286)
T PRK06801 90 VVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTG 169 (286)
T ss_pred HHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHC
Confidence 445578999999997654 567888877777662 2122222211 1125 4799999997542
Q ss_pred h--C-----CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe-cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 272 D--M-----GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 272 ~--~-----~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~-dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
- + ..|-.| ..-+.-+++.++++++ .+++|+.+ |=|-++.++++++++.+ ++-|++.-...
T Consensus 170 vD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~----~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T~~~ 237 (286)
T PRK06801 170 IDALAVAIGNAHGKY--KGEPKLDFARLAAIHQ----QTGLPLVLHGGSGISDADFRRAIELG-IHKINFYTGMS 237 (286)
T ss_pred cCEEEeccCCCCCCC--CCCCCCCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehhHHH
Confidence 1 0 111112 2223457888888875 56788855 45667788899999876 55677765444
No 176
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.94 E-value=28 Score=34.08 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=76.7
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE----------EeCCC-CC-CHHHHHHHHHHhhh
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI----------LDANE-GY-TSEEAVEVLGKLND 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~----------vDAN~-~~-s~~~A~~~l~~L~~ 272 (427)
+.+.++.||+.+-+.-.. ++++.+++.+.+.+. += +.+|- .+.+. .| +|++|.+|+++..-
T Consensus 90 i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~Tgv 169 (284)
T PRK12857 90 VMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGV 169 (284)
T ss_pred HHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCC
Confidence 445668899999999764 788888888777662 21 12221 11121 25 59999999986431
Q ss_pred ------CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ------~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
.| .|=.|-.+| .-|++-++++++ .+++|+.+.= |=...++++++++.+ +.=||+...
T Consensus 170 D~LAvaiGt~HG~y~~~p--~Ld~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~ 234 (284)
T PRK12857 170 DALAIAIGTAHGPYKGEP--KLDFDRLAKIKE----LVNIPIVLHGSSGVPDEAIRKAISLG-VRKVNIDTN 234 (284)
T ss_pred CEEeeccCccccccCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeCcH
Confidence 11 121244444 458899999976 5788887754 667778899999876 444666554
No 177
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=76.90 E-value=83 Score=31.35 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=78.0
Q ss_pred HHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE------
Q 014285 208 ASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF------ 280 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i------ 280 (427)
..+.++.++++|.+.|-+.... +.+.-.+.++.+|+.+|++.+++ ...-++++|.+.++. +....-+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l~~a----GaD~I~vg~g~G~ 168 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDLIDA----GADGVKVGIGPGS 168 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHHHhc----CCCEEEECCCCCc
Confidence 3566778889999988887642 23445678999999888888887 333577777666553 2210011
Q ss_pred ------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 281 ------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 281 ------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.......++..+.++.+.+ ...++||..|--+.+..++.+++..+ ++.+++-
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~VmiG 226 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVMLG 226 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEec
Confidence 1112223555666665432 23579999999999999999999865 6677664
No 178
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=76.81 E-value=14 Score=33.91 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCC--CC-CCChhhHHHHHHhhccccCCeEEecCCCCCHH--HHHHHHHcCCCcEE
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQP--VH-RDDWSGLHDVSNFARDTYGISVVADESCRSLN--DVQKVMQENLASVV 331 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP--~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~--~~~~ll~~~a~~~i 331 (427)
..++++|++.++.| +-++. |||-. +. +.-.+.++.|++. ..+..|..|=.+.+.. +++++.+.+ +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~--~iev~~~l~~~~g~~~i~~l~~~---~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVD--IIEIGTPLIKNEGIEAVKEMKEA---FPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCee--EEEeCCHHHHHhCHHHHHHHHHH---CCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 46789999999999 66764 99995 42 2235556666641 2356777776555554 567777665 7888
Q ss_pred EeCCCCccHHHHHHHHHHHHHcCCcEEEc
Q 014285 332 NIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 332 ~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (427)
.+.... +.....++++.|+++|+++.+.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 766543 2223467888899999999975
No 179
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=76.71 E-value=27 Score=34.09 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=74.3
Q ss_pred HHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E-eCC-------CCC-CHHHHHHHHHHhhh---
Q 014285 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L-DAN-------EGY-TSEEAVEVLGKLND--- 272 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v-DAN-------~~~-s~~~A~~~l~~L~~--- 272 (427)
.+.++.||+.+-+.... ++++.+++.+.+.+. += +.+|- | ..+ ..| +|++|.+|+++..-
T Consensus 86 ~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~L 165 (276)
T cd00947 86 KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL 165 (276)
T ss_pred HHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEE
Confidence 34468899999999775 788888887777662 21 22221 1 011 125 49999999997531
Q ss_pred ---CC-CCCceEe-CCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 273 ---MG-VIPVLFE-QPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 273 ---~~-l~~~~iE-qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+| .|=.|-. +| .-|++-++++++ .+++|+++.= |-.+.++++++++.+ +.=||+..
T Consensus 166 AvsiGt~HG~Y~~~~p--~L~~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T 227 (276)
T cd00947 166 AVAIGTSHGAYKGGEP--KLDFDRLKEIAE----RVNVPLVLHGGSGIPDEQIRKAIKLG-VCKININT 227 (276)
T ss_pred EeccCccccccCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeCh
Confidence 11 2211333 44 347888999986 5789987754 667778899998876 43455544
No 180
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=76.69 E-value=27 Score=34.24 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=76.2
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLN 271 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~ 271 (427)
.+.+.++.||+.+-+.-.. ++++.+++.+.+.+. += +.+|- | +.+ .-| +|++|.+|.++..
T Consensus 89 ~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~Tg 168 (286)
T PRK12738 89 DIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTG 168 (286)
T ss_pred HHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhC
Confidence 3445568899999999764 788888888777662 21 22221 1 111 116 5999999998642
Q ss_pred h------CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 272 D------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 272 ~------~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
- +| .|=.|-..| .-|++.++++++ .+++|+.+.= |-...++++++++.+ +.=||+....
T Consensus 169 vD~LAvaiGt~HG~Y~~~p--~Ldfd~l~~I~~----~~~vPLVLHGgSG~~~e~~~kai~~G-I~KiNi~T~l 235 (286)
T PRK12738 169 VDSLAVAIGTAHGLYSKTP--KIDFQRLAEIRE----VVDVPLVLHGASDVPDEFVRRTIELG-VTKVNVATEL 235 (286)
T ss_pred CCEEEeccCcccCCCCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 1 11 111133333 457899999976 5789997754 666777889898876 4446665433
No 181
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=76.60 E-value=42 Score=30.63 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=74.7
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (427)
+...++++..+.++.+ +.|.+.+|+ |. ....-.+.++.+|+.+++..+.+|..=. ++.. .-++.+.+.|..
T Consensus 6 lD~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad- 78 (206)
T TIGR03128 6 LDLLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGAD- 78 (206)
T ss_pred ecCCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCC-
Confidence 3455788888888877 778887666 42 2234477899999987777777776322 2221 124445555543
Q ss_pred ceE----eCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCC-HHHHHHHHHcCCCcEEEeCCCC
Q 014285 278 VLF----EQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRS-LNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 278 ~~i----EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~-~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+| |-|- .+...+.+.++ +.++++..+= +..+ ..+++.+.+. .+|++.+.|..
T Consensus 79 -~i~vh~~~~~--~~~~~~i~~~~----~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~pg~ 136 (206)
T TIGR03128 79 -IVTVLGVADD--ATIKGAVKAAK----KHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHTGL 136 (206)
T ss_pred -EEEEeccCCH--HHHHHHHHHHH----HcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcCCc
Confidence 55 6442 22344444443 5788988752 3333 3566666655 68999888753
No 182
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=76.56 E-value=74 Score=30.58 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-----cC---CchhhHHHHHHHHH-h-C-CCcEEEEeCCCCCCHHHHHH
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNV-----GR---NITADFDVLQAIHA-V-H-PHCSFILDANEGYTSEEAVE 265 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKi-----G~---~~~~d~~~l~~ir~-~-~-~~~~L~vDAN~~~s~~~A~~ 265 (427)
.+++++.+.++++.++|-..|++-. |. +.+++.+++..+-+ + . -++.|.+|....-..+.|++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~ 93 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALE 93 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHH
Confidence 4788999999999999999999931 11 33445556543333 2 1 27889999766544444444
No 183
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=76.27 E-value=32 Score=32.94 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=31.7
Q ss_pred HHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 239 QAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 239 ~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
+.+|+.|..+.+..---..++++...++++++.+++....+|=+.+-.-..+.++++.+.+++..++||.
T Consensus 117 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~ 186 (259)
T cd07939 117 GRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLE 186 (259)
T ss_pred HHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3334344333333333334556666666666665554433444444333444444444433334444443
No 184
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.17 E-value=90 Score=31.37 Aligned_cols=129 Identities=18% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (427)
.++++-.+.+++.....+..+-+-+|.. ++|.++++++-+..+++ -|.||.-.+++.. .+++++.+++.-
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~-~i~~ik~ik~~~------- 149 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEH-FVQFVAKAREAW------- 149 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHH-HHHHHHHHHHhC-------
Confidence 3566666666665545455555667754 57899999999853332 4778999998844 366666555420
Q ss_pred CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC-----------CCCcc---HHHHHHHH
Q 014285 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK-----------LAKFG---VLGTLQII 347 (427)
Q Consensus 282 qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk-----------~~~~G---i~~~~~~~ 347 (427)
..++|.+| ++.+.+..+.|++.+ +|++.+- .+-+| ++...+.+
T Consensus 150 ---------------------P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 150 ---------------------PDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred ---------------------CCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 12455555 566777888888875 6765421 12234 67788899
Q ss_pred HHHHHcCCcEEEcccC
Q 014285 348 KATRKSGLHLMIDGMI 363 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~ 363 (427)
+.|++.|++++-.+-.
T Consensus 207 ~~a~~~gvpiIADGGi 222 (346)
T PRK05096 207 DAAHGLGGQIVSDGGC 222 (346)
T ss_pred HHHHHcCCCEEecCCc
Confidence 9999999999876533
No 185
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.03 E-value=51 Score=34.67 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCcEEEEeccCC-chhhHHHHHHHHHhCCCcEEEEeCC--CCCCHHHHHHHHHHhhhCCCCCceEeCCCCC
Q 014285 210 ELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHAVHPHCSFILDAN--EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~~-~~~d~~~l~~ir~~~~~~~L~vDAN--~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~ 286 (427)
..++...+.|...|.+-...+ .+.-...++.+++.|..+...++.. ..++++..+++++.+.+.|.+...|=+..--
T Consensus 99 ~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 335555667777766665542 2222223444455554444444322 2456677777777777777665566666655
Q ss_pred CChhhHHHHHHhhccccCCeEEe
Q 014285 287 DDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
-......+|.+.+++..++||..
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~~ 201 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVEV 201 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceEE
Confidence 55555555555555556677654
No 186
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.97 E-value=73 Score=33.30 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhC---CCCCceE--
Q 014285 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM---GVIPVLF-- 280 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~---~l~~~~i-- 280 (427)
+..++++.+++.|...|-+..-. +-..-.+.++.||+.+|++.+.+ -...|+++|...++.=.+. ++++-.+
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALIDAGADGLRVGIGPGSICT 301 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHHhCCCEEEECCCCCcCCc
Confidence 34466778889999999998742 22345667888888888888877 4456888887776641111 1100000
Q ss_pred -eC--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc
Q 014285 281 -EQ--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 281 -Eq--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G 339 (427)
.+ .+-..++....++++.+ +..++||..|--+.+..|+.+++..+ ++.+++--...|
T Consensus 302 t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~G-A~~V~~G~~~a~ 361 (450)
T TIGR01302 302 TRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAG-ADAVMLGSLLAG 361 (450)
T ss_pred cceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECchhhc
Confidence 10 11112344444444322 24789999999999999999999886 667776544434
No 187
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=75.78 E-value=40 Score=32.43 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=79.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHHhC-C-CcEEEEeCC----C-------CC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVH-P-HCSFILDAN----E-------GY 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~~~-~-~~~L~vDAN----~-------~~ 258 (427)
+|+-...++.+ +.++++.+.|...+=+--.. +..-+.+.++.+.+.+ + .+.+.+|+. + +|
T Consensus 77 ~~v~vGGGIr~-----e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW 151 (253)
T TIGR02129 77 GGLQVGGGIND-----TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKW 151 (253)
T ss_pred CCEEEeCCcCH-----HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCC
Confidence 45445555543 34567788897765542211 2222477888888865 4 588899984 3 24
Q ss_pred CH---HHHH-HHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc--C
Q 014285 259 TS---EEAV-EVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--N 326 (427)
Q Consensus 259 s~---~~A~-~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~--~ 326 (427)
.. -++. ++++.++++ +. ..|=.=+.. -|++.++++++ .+++||.+-=-+.+.+|++++-+. +
T Consensus 152 ~~~t~~~~~~e~~~~~~~~-~~-~il~TdI~rDGtl~G~dlel~~~l~~----~~~ipVIASGGv~s~eDi~~l~~~~~g 225 (253)
T TIGR02129 152 QTITDLELNAETLEELSKY-CD-EFLIHAADVEGLCKGIDEELVSKLGE----WSPIPITYAGGAKSIDDLDLVDELSKG 225 (253)
T ss_pred cccCCCChHHHHHHHHHhh-CC-EEEEeeecccCccccCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhcCC
Confidence 21 1233 555555544 32 233333332 27788888886 688999887788999999887433 4
Q ss_pred CCcEEEeCC
Q 014285 327 LASVVNIKL 335 (427)
Q Consensus 327 a~~~i~lk~ 335 (427)
..+++.-+.
T Consensus 226 ~~~aIvG~A 234 (253)
T TIGR02129 226 KVDLTIGSA 234 (253)
T ss_pred CCcEEeeeh
Confidence 556665554
No 188
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=75.66 E-value=24 Score=33.18 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=61.2
Q ss_pred EEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCc
Q 014285 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLAS 329 (427)
Q Consensus 251 ~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~ 329 (427)
.-+++...+++++..++..-+.+++|+.|+|-==...+.+-.+++++ .+ ++||..|=-+.+.++++++++.+ +|
T Consensus 125 v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-AD 199 (219)
T cd02812 125 VTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK----VLGDTPLIVGGGIRSGEQAKEMAEAG-AD 199 (219)
T ss_pred eeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH----hcCCCCEEEeCCCCCHHHHHHHHHcC-CC
Confidence 34555567899999999999999999889992112345566666664 56 89999999999999999999766 67
Q ss_pred EEEeCC
Q 014285 330 VVNIKL 335 (427)
Q Consensus 330 ~i~lk~ 335 (427)
.+++--
T Consensus 200 ~VVVGs 205 (219)
T cd02812 200 TIVVGN 205 (219)
T ss_pred EEEECc
Confidence 776643
No 189
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.64 E-value=42 Score=31.18 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccC--CeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYG--ISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~--iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+.+++.+.++++-+.|+. .+|=.+...+. +.+++|++ +.+ +.|..| .+.+.++++..++.+ .+++.. |
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaG-TV~~~~~~~~a~~aG-A~fivs-p 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAG-TVLSPEQVDRLADAG-GRLIVT-P 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEE-ecCCHHHHHHHHHcC-CCEEEC-C
Confidence 789999999999999986 89999876554 35677765 344 444444 788899999999887 566655 2
Q ss_pred CCccHHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 336 AKFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
.. -.++++.++..|+.+.+++...+
T Consensus 91 ~~-----~~~v~~~~~~~~~~~~~G~~t~~ 115 (206)
T PRK09140 91 NT-----DPEVIRRAVALGMVVMPGVATPT 115 (206)
T ss_pred CC-----CHHHHHHHHHCCCcEEcccCCHH
Confidence 22 14677788899999999986543
No 190
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=75.63 E-value=48 Score=35.99 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCC
Q 014285 210 ELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA--NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDA--N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~ 286 (427)
..++...+.|.+.|.+-... +.+.=...++.+++.|..+...+.. ...++++..+++++.+.+.+.+...|=+-.--
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~ 179 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGL 179 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC
Confidence 34444455566665555443 2222222334444444444333322 12345566666666666665554455555444
Q ss_pred CChhhHHHHHHhhccccCCeEEe
Q 014285 287 DDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
-......+|.+.+++..++||..
T Consensus 180 ~~P~~~~~lv~~lk~~~~~pi~~ 202 (592)
T PRK09282 180 LTPYAAYELVKALKEEVDLPVQL 202 (592)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEE
Confidence 34444444444444444555544
No 191
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.43 E-value=71 Score=29.83 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=96.8
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++++-+-.-. ..-.+.++.+|+.+|++.+ =|-.-.+.+++.+..+ .|-. |
T Consensus 21 ~r~~~~~~a~~i~~al~~~Gi~~iEitl~~--~~~~~~I~~l~~~~p~~~I--GAGTVl~~~~a~~a~~----aGA~--F 90 (212)
T PRK05718 21 IVINKLEDAVPLAKALVAGGLPVLEVTLRT--PAALEAIRLIAKEVPEALI--GAGTVLNPEQLAQAIE----AGAQ--F 90 (212)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEecCC--ccHHHHHHHHHHHCCCCEE--EEeeccCHHHHHHHHH----cCCC--E
Confidence 345688999999999999999999888543 3567788999988887544 4445566666555444 4543 7
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~ 357 (427)
+=-|.-.. +..+.|. +.++|..-| +.|+.++.++++.+ ++++-+-|.- .| +.-...+...- -++++
T Consensus 91 ivsP~~~~---~vi~~a~----~~~i~~iPG--~~TptEi~~a~~~G-a~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~ 158 (212)
T PRK05718 91 IVSPGLTP---PLLKAAQ----EGPIPLIPG--VSTPSELMLGMELG-LRTFKFFPAEASGGVKMLKALAGPF--PDVRF 158 (212)
T ss_pred EECCCCCH---HHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEEccchhccCHHHHHHHhccC--CCCeE
Confidence 77776532 4455554 578888854 56888888888876 6888887755 44 55444443332 36999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 159 ~ptGGV 164 (212)
T PRK05718 159 CPTGGI 164 (212)
T ss_pred EEeCCC
Confidence 988744
No 192
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=75.33 E-value=54 Score=34.80 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCc--EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC
Q 014285 208 ASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHC--SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~--~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~ 284 (427)
+...+++..+.|...|.+-... |++.=...++++++.+... .|..--....+++...++++.+.+.|.+...|-+-.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDta 178 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMA 178 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 3556777778899988777664 3433334467777766433 332222346789999999999999888767788877
Q ss_pred CCCChhhHHHHHHhhcccc--CCeEEecCCCC-C--HHHHHHHHHcCCCcEEEeCCCCccH------HHHHHHHHHHHHc
Q 014285 285 HRDDWSGLHDVSNFARDTY--GISVVADESCR-S--LNDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKS 353 (427)
Q Consensus 285 ~~~d~~~~~~L~~~~r~~~--~iPIa~dE~~~-~--~~~~~~ll~~~a~~~i~lk~~~~Gi------~~~~~~~~~A~~~ 353 (427)
---......+|.+.+++.. .+||...=+.. + ......+++.+ +++ +|.+..|+ ..+..++...+..
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG-ad~--vDtai~Glg~~aGn~atE~vv~~L~~~ 255 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG-VDV--VDTAISSMSLGPGHNPTESLVEMLEGT 255 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC-CCE--EEeecccccccccchhHHHHHHHHHhc
Confidence 6666666777766666566 58887642211 1 22224455554 565 45444432 2245555555555
Q ss_pred CCc
Q 014285 354 GLH 356 (427)
Q Consensus 354 gi~ 356 (427)
|..
T Consensus 256 g~~ 258 (499)
T PRK12330 256 GYT 258 (499)
T ss_pred CCC
Confidence 443
No 193
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=75.25 E-value=27 Score=35.15 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=79.9
Q ss_pred eeeeeeecCC-------CHHHHHHHHHHHhhcCCcEEEEeccC----------CchhhHHHHHHHHHhCC----CcEEEE
Q 014285 194 LSTAITIPAV-------SPAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (427)
Q Consensus 194 ip~~~~i~~~-------~~~~~~~~~~~~~~~Gf~~iKlKiG~----------~~~~d~~~l~~ir~~~~----~~~L~v 252 (427)
+|+-.++... +.++..+.+++. +.+...+-+.++. +.+.-.+.+++||+.-. ++.+.|
T Consensus 138 ~pvivsI~~~~~~~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~v 216 (344)
T PRK05286 138 IPLGINIGKNKDTPLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLV 216 (344)
T ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEE
Confidence 4555555432 456766666665 4467788887752 22334567888888432 345554
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC----------C-------------CCChhhHHHHHHhhcccc--CCeE
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV----------H-------------RDDWSGLHDVSNFARDTY--GISV 307 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~----------~-------------~~d~~~~~~L~~~~r~~~--~iPI 307 (427)
=-+-.++.++..++++.+++.++.-.-+=-.+ . +-.++..+++++ .. ++||
T Consensus 217 Klsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~----~~~~~ipI 292 (344)
T PRK05286 217 KIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYK----ELGGRLPI 292 (344)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHH----HhCCCCCE
Confidence 44445777788888888887654311111111 0 002223334443 44 6888
Q ss_pred EecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 308 VADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 308 a~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.+-=-+.+.+|+.+++..+ ++.||+--
T Consensus 293 ig~GGI~s~eda~e~l~aG-Ad~V~v~~ 319 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAG-ASLVQIYS 319 (344)
T ss_pred EEECCCCCHHHHHHHHHcC-CCHHHHHH
Confidence 8777888888888888754 77766543
No 194
>PLN02858 fructose-bisphosphate aldolase
Probab=75.20 E-value=21 Score=42.72 Aligned_cols=96 Identities=10% Similarity=0.073 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeCCCC----CCChh---hHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCC
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH----RDDWS---GLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENL 327 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~----~~d~~---~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a 327 (427)
.-|+.+.+...+++-++.+-. .-| |=-+ ....+ .+..++ ++..+||++.= +..+.+.+++.++.+
T Consensus 1120 n~~n~e~~~avi~aAe~~~sP-vIl-~~~~~~~~~~~~~~~~~~~~~a----~~~~vpV~lHLDHg~~~~~i~~ai~~G- 1192 (1378)
T PLN02858 1120 NVYNLEGIEAVVAAAEAEKSP-AIL-QVHPGALKQGGIPLVSCCIAAA----EQASVPITVHFDHGTSKHELLEALELG- 1192 (1378)
T ss_pred EeCCHHHHHHHHHHHHHhCCC-EEE-ECCccHHhhcCHHHHHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHhC-
Confidence 345677777777777665532 112 1111 01112 122333 35789999874 555788889999985
Q ss_pred CcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 328 ASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 328 ~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
++.|.+|-|..= +..+++++++|+++|+.+-
T Consensus 1193 f~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VE 1227 (1378)
T PLN02858 1193 FDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVE 1227 (1378)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 899999999873 7779999999999999884
No 195
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=75.12 E-value=85 Score=30.54 Aligned_cols=148 Identities=9% Similarity=0.130 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhhc-CCcEEEEeccC------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 204 SPAEASELASKYCKL-GFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~-Gf~~iKlKiG~------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
|.+.+.+.++.+.+. |.+.+=+--.. ..++=.+.++.+.+ ....+.+++=+. +.+.+++++.++..++.|.
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKESQELAKHAEELGY 97 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHHHHHHHHHHHHcCC
Confidence 567778888888898 98886654421 22333444565665 345677777443 3678999999999998775
Q ss_pred CCceEeCCCC--CC---ChhhHHHHHHhhcccc-CCeEEecC------CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH
Q 014285 276 IPVLFEQPVH--RD---DWSGLHDVSNFARDTY-GISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (427)
Q Consensus 276 ~~~~iEqP~~--~~---d~~~~~~L~~~~r~~~-~iPIa~dE------~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~ 342 (427)
.-..+=-|.. .. -++-++++++ .+ ++||.+=. ...+...+.++.+ .++++-+|-+- | +..
T Consensus 98 d~v~~~~P~y~~~~~~~i~~~~~~v~~----a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s~-~d~~~ 170 (288)
T cd00954 98 DAISAITPFYYKFSFEEIKDYYREIIA----AAASLPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFTA-TDLYD 170 (288)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHH----hcCCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHH
Confidence 4222233432 11 1233455654 57 78887632 1234555677764 57889999874 5 655
Q ss_pred HHHHHHHHHHcCCcEEEc
Q 014285 343 TLQIIKATRKSGLHLMID 360 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~ 360 (427)
..++++... .++.+..+
T Consensus 171 ~~~~~~~~~-~~~~v~~G 187 (288)
T cd00954 171 LERIRAASP-EDKLVLNG 187 (288)
T ss_pred HHHHHHhCC-CCcEEEEe
Confidence 555443221 24555544
No 196
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=74.90 E-value=26 Score=32.87 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccCC---------------chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGRN---------------ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~~---------------~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (427)
.+.+...++.+.+.|...+.+-+..+ ++.-.+.++.+|+.+.++.+...-...+++++..++.+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEA 145 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHH
Confidence 33333334445566777666665432 111222344445556666666666666777777777777
Q ss_pred hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEe
Q 014285 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (427)
Q Consensus 270 L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~ 309 (427)
+.+++.....|-+-.-.-....+.++.+.+++..+ +||..
T Consensus 146 ~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~ 186 (237)
T PF00682_consen 146 LAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGF 186 (237)
T ss_dssp HHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEE
Confidence 77766554455555544444555555444444444 55544
No 197
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=74.57 E-value=41 Score=32.99 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 304 GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 304 ~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
++||++.= ...+.+...++++.+ ++.+.+|-|..= +..+++++++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 48998874 555778889999986 899999999873 7789999999999999884
No 198
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=74.08 E-value=55 Score=30.05 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=71.4
Q ss_pred HHHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH--------hhhCCCCCc
Q 014285 209 SELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK--------LNDMGVIPV 278 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~--------L~~~~l~~~ 278 (427)
.+.++++.+.|-..+=+..-. .++.-.+.++.||+.+ .-+|.|.. |.+|++...+. |..|
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~~G~D~I~TTLsGY----- 123 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAELGFDIIGTTLSGY----- 123 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHHTT-SEEE-TTTTS-----
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHHcCCCEEEcccccC-----
Confidence 355667788999998888752 2355567889999988 89999984 67888776653 2322
Q ss_pred eEeCCC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 279 LFEQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 279 ~iEqP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
-++.- ...|++-+++|++ .++||...=...++++..++++.++..++
T Consensus 124 -T~~t~~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 124 -TPYTKGDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp -STTSTTSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred -CCCCCCCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 22222 2336788888874 48999887799999999999999866543
No 199
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.02 E-value=70 Score=29.10 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=88.6
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++++.+.|.+.+.+..-. ....+.++.+++..+. +.+.++.-++.+++ +.+..+.-- +
T Consensus 18 ~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~~~e~~~~~~~~~~~--~~~g~gtvl~~d~~-~~A~~~gAd-----g 87 (187)
T PRK07455 18 IRAPDLELGLQMAEAVAAGGMRLIEITWNS--DQPAELISQLREKLPE--CIIGTGTILTLEDL-EEAIAAGAQ-----F 87 (187)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCC--cEEeEEEEEcHHHH-HHHHHcCCC-----E
Confidence 344578888899999999999999998743 2345677777776653 33444455666553 333333322 3
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc--cHHHHHHHHHHHHHc-CCc
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF--GVLGTLQIIKATRKS-GLH 356 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~--Gi~~~~~~~~~A~~~-gi~ 356 (427)
+=-|-. + ....+.++ ..+++...| +.++.++.++.+. .+||+-+=|+.. |+....++. ... +++
T Consensus 88 v~~p~~--~-~~~~~~~~----~~~~~~i~G--~~t~~e~~~A~~~-Gadyv~~Fpt~~~~G~~~l~~~~---~~~~~ip 154 (187)
T PRK07455 88 CFTPHV--D-PELIEAAV----AQDIPIIPG--ALTPTEIVTAWQA-GASCVKVFPVQAVGGADYIKSLQ---GPLGHIP 154 (187)
T ss_pred EECCCC--C-HHHHHHHH----HcCCCEEcC--cCCHHHHHHHHHC-CCCEEEECcCCcccCHHHHHHHH---hhCCCCc
Confidence 323322 3 23344443 356677777 8899999888876 489998877753 455544443 334 589
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
++..+-+
T Consensus 155 vvaiGGI 161 (187)
T PRK07455 155 LIPTGGV 161 (187)
T ss_pred EEEeCCC
Confidence 8876533
No 200
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.91 E-value=25 Score=37.14 Aligned_cols=126 Identities=23% Similarity=0.285 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHhhh---CCCCC----
Q 014285 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLND---MGVIP---- 277 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~---~~l~~---- 277 (427)
+..+.++.++++|-+.+-+.... .-..-++.++.||+.+|++.++. |.- |.++|...+++=.+ .++-+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~---t~~~a~~l~~aGad~v~vgig~gsic 303 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV---TAEGTRDLVEAGADIVKVGVGPGAMC 303 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC---CHHHHHHHHHcCCCEEEECccCCccc
Confidence 34567788889999998887753 23445677899999999988887 543 56777666653111 00000
Q ss_pred -ceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 278 -VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 278 -~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
...=-.+...|+....++++.++ ..++||.+|--+.+..++.+++..+ ++.+++--..
T Consensus 304 tt~~~~~~~~p~~~av~~~~~~~~-~~~~~via~ggi~~~~~~~~al~~g-a~~v~~g~~~ 362 (479)
T PRK07807 304 TTRMMTGVGRPQFSAVLECAAAAR-ELGAHVWADGGVRHPRDVALALAAG-ASNVMIGSWF 362 (479)
T ss_pred ccccccCCchhHHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHcC-CCeeeccHhh
Confidence 00001112236777777776432 4689999999999999999999875 5666654333
No 201
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=73.87 E-value=28 Score=34.49 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=46.7
Q ss_pred ccC-CeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYG-ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~-iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.+ +||++.= ...+.+..++.++.+ ++.+.+|-|..= +..+++++++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 71 RYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 454 8999874 556788889999986 899999999863 7789999999999999874
No 202
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=73.54 E-value=22 Score=34.28 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHhh-cCCcEEEEeccCCchhhHHHHHHHHHhC-C-----CcEEEEeCC-CCC-----C---HHHHHHH
Q 014285 203 VSPAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIHAVH-P-----HCSFILDAN-EGY-----T---SEEAVEV 266 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~-~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-----~~~L~vDAN-~~~-----s---~~~A~~~ 266 (427)
+++++..+.+.+..+ .|-..+|+--| ++-.++++++++.+ | ++.=+-|.+ ++| + .+++++.
T Consensus 87 ~~~~~av~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 87 TSPEQALRNAARLMKEAGADAVKLEGG---AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 358888777666666 99999999876 35577888888754 2 111122221 222 2 4678888
Q ss_pred HHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 267 l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
++++++.|....++|-+ + . +..+++++ ++++|+.
T Consensus 164 a~a~~~AGA~~i~lE~v-~-~--~~~~~i~~----~v~iP~i 197 (254)
T cd06557 164 ALALEEAGAFALVLECV-P-A--ELAKEITE----ALSIPTI 197 (254)
T ss_pred HHHHHHCCCCEEEEcCC-C-H--HHHHHHHH----hCCCCEE
Confidence 88999988665577777 3 2 57788886 6778876
No 203
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=73.51 E-value=36 Score=33.42 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=76.3
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhhh
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLND 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~~ 272 (427)
+.+.++.||+.+-+.-.. ++++.+++-+.+.+. += +.+|- | +.+ ..| +|++|.+|+++..-
T Consensus 93 i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 172 (288)
T TIGR00167 93 CAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGV 172 (288)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCC
Confidence 445568899999999764 788999888887762 21 22221 1 111 226 59999999986321
Q ss_pred ------CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ------~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
.| .|=.|-..|-. -|++-++++++ .+++|+.+.= |=.+.++++++++.+ +.=||+...
T Consensus 173 D~LAvaiGt~HG~y~~~p~~-Ld~~~L~~I~~----~v~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~ 238 (288)
T TIGR00167 173 DSLAAAIGNVHGVYKGEPKG-LDFERLEEIQK----YVNLPLVLHGGSGIPDEEIKKAISLG-VVKVNIDTE 238 (288)
T ss_pred cEEeeccCccccccCCCCCc-cCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEcChH
Confidence 11 22124444531 47888898876 6789987754 666777899999876 333555543
No 204
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.46 E-value=29 Score=33.98 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=46.9
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+.+.+.+.++.+ ++.|.+|-|..= +..+++++++|+.+|+.+-
T Consensus 72 ~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 72 KASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788998874 556778889999985 899999999873 7779999999999999874
No 205
>PRK08185 hypothetical protein; Provisional
Probab=73.34 E-value=30 Score=33.85 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=46.6
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+.+.++++++.+ ++.|++|-+..- +..++++.++|+++|+.+.
T Consensus 66 ~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 66 RSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5788998874 455788889999875 889999998873 6779999999999999884
No 206
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=73.11 E-value=1.3e+02 Score=31.87 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=81.3
Q ss_pred HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe---CCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---QPV 284 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---qP~ 284 (427)
.+.++.++++|...+-+.... +-..-++.++.||+.+|++.+.+ ..-.|.++|...++. |.. +|= -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~~a----Gad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLIDA----GAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHHHc----CCC--EEEECCcCC
Confidence 677888999999999988742 22234678999999888888877 445678887766653 322 331 110
Q ss_pred -----------CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc
Q 014285 285 -----------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 285 -----------~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G 339 (427)
-..++..+.++++.+ ++.++||..|--+.+..|+.+++..+ ++.+++--...|
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~G-A~~Vm~G~~~a~ 378 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALG-ADCVMLGSLLAG 378 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcC-CCEEEECchhcc
Confidence 011344444444322 25789999999999999999999876 677777554444
No 207
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=73.04 E-value=75 Score=30.37 Aligned_cols=104 Identities=12% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeCCCCC---CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR---DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~---~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
..|+.++.+++++.|.+.|++ .||=-++. .+++.++++.+ ...+..+..- .-.+..+++.+++.+ ++.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 468999999999999999986 89985542 33456666654 1234444332 224677888888764 67666
Q ss_pred eCCCCc-------------c-HHHHHHHHHHHHHcCCcEEEcccCchh
Q 014285 333 IKLAKF-------------G-VLGTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 333 lk~~~~-------------G-i~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
+=.+.. - +....+.++.|+++|+.+.++.+..+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 135 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR 135 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC
Confidence 632211 1 345678999999999999888765443
No 208
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=73.00 E-value=79 Score=29.27 Aligned_cols=111 Identities=20% Similarity=0.308 Sum_probs=72.4
Q ss_pred HHHHHHhhcCCcEEEEeccC--Cc--hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--eC-
Q 014285 210 ELASKYCKLGFSTLKLNVGR--NI--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--EQ- 282 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~--~~--~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--Eq- 282 (427)
++++..++.|-..+=+.... .. +...+.++++++.+ ++.+.++.+ |++++... .+.+.. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea~~a----~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEALNA----AKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHHHHH----HHcCCC--EEEccCc
Confidence 35667778898877665432 12 24556778888888 888888654 67776443 334442 34 20
Q ss_pred ---C----CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 283 ---P----VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 283 ---P----~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+ ....+++.++++++ ..++||...=-+.+..+++++++.+ +|.+.+--
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~vGs 207 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVVGS 207 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEch
Confidence 0 11234566677764 4689999877888899999999876 78777643
No 209
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=72.72 E-value=42 Score=33.02 Aligned_cols=54 Identities=6% Similarity=0.123 Sum_probs=44.3
Q ss_pred CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 304 ~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
++||++.=...+.+.++++++.+ ++.||+|-+..- +..++++.++|+++|+.+.
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 67888775444777889999865 899999998874 6679999999999999883
No 210
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=72.67 E-value=35 Score=33.51 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=46.9
Q ss_pred cc--CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TY--GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~--~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+. ++||++.= ...+.+.+++.++.+ ++.+.+|-|..= +..+++++++|++.|+.+-
T Consensus 73 ~~~~~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 73 AYPYGVPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred hccCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45 78998874 556788889999885 999999999873 7779999999999999874
No 211
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=72.55 E-value=1.1e+02 Score=30.57 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=81.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------Cc-hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------~~-~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~ 262 (427)
+|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.+++|++.. ++.+.|=-+..+ ++
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 566677777788888888888878899999997652 11 11245667777642 344444433333 24
Q ss_pred HHHHHHHhhhCCCCCceEeC--CCCC--CCh---------------------hhHHHHHHhhccccCCeEEecCCCCCHH
Q 014285 263 AVEVLGKLNDMGVIPVLFEQ--PVHR--DDW---------------------SGLHDVSNFARDTYGISVVADESCRSLN 317 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEq--P~~~--~d~---------------------~~~~~L~~~~r~~~~iPIa~dE~~~~~~ 317 (427)
..++++.|++.++. .|-- -+.. -|+ +..++++ +..++||.+.=-+.+..
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~----~~~~ipIig~GGI~s~~ 252 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILS----GRVGADLAATTGVHDAE 252 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHH----hhcCCCEEEECCCCCHH
Confidence 45667777766543 2210 0000 011 1222333 35689999888899999
Q ss_pred HHHHHHHcCCCcEEEeCCC
Q 014285 318 DVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 318 ~~~~ll~~~a~~~i~lk~~ 336 (427)
|+.+.+..+ ++.+|+=-.
T Consensus 253 Da~e~l~aG-A~~V~v~t~ 270 (334)
T PRK07565 253 DVIKMLLAG-ADVVMIASA 270 (334)
T ss_pred HHHHHHHcC-CCceeeehH
Confidence 999999865 788887543
No 212
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=72.53 E-value=39 Score=36.66 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=88.9
Q ss_pred HHHH-HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCC----cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 205 PAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPH----CSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 205 ~~~~-~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~----~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
++++ ...++...+.|...|.+--.. |++.=...++++++.|-. +.++.+ -.+|++...++++.+.+.|.+..
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~s--p~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTS--PVHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCC--CCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444 456777788898887765543 344444457777877643 334443 37889999999999999888777
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC-C--HHHHHHHHHcCCCcEEEeCCCCccH------HHHHHHHHH
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR-S--LNDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKA 349 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~-~--~~~~~~ll~~~a~~~i~lk~~~~Gi------~~~~~~~~~ 349 (427)
.|-+..---......+|.+.+++..++||...=+.. + ......+++.+ +++ +|.+..|+ ..+..++..
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG-ad~--iD~ai~glGg~tGn~~tE~lv~~ 248 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG-CNH--IDTAISSFSGGASHPPTEALVAA 248 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC-CCE--EEeccccccCCCCcHhHHHHHHH
Confidence 888877666666666666666667788887643221 1 11224455554 665 44444332 234455555
Q ss_pred HHHcCC
Q 014285 350 TRKSGL 355 (427)
Q Consensus 350 A~~~gi 355 (427)
.+..|.
T Consensus 249 L~~~g~ 254 (596)
T PRK14042 249 LTDTPY 254 (596)
T ss_pred HHhcCC
Confidence 555443
No 213
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=72.11 E-value=99 Score=29.98 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=94.5
Q ss_pred eeeecCCCHHHHHHHHHHHhhcCCcEEEEecc----------------------CCchhhHHHHHHHHHhCCC--cEEEE
Q 014285 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG----------------------RNITADFDVLQAIHAVHPH--CSFIL 252 (427)
Q Consensus 197 ~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG----------------------~~~~~d~~~l~~ir~~~~~--~~L~v 252 (427)
|.+.+.-+++...+.++.+.+.|-..+-+-+- ...++-++.++.+|+.+++ +-||.
T Consensus 22 yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~ 101 (265)
T COG0159 22 YVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMT 101 (265)
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 55666557777777788888888888877662 1234567788888876665 56676
Q ss_pred eCCCCC------------------------CHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccc----cC
Q 014285 253 DANEGY------------------------TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT----YG 304 (427)
Q Consensus 253 DAN~~~------------------------s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~----~~ 304 (427)
=+|--| .++++-++.+..+++++.+.++=-|..++ +.+.++.+..+.- +.
T Consensus 102 Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~--~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 102 YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD--ERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred eccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHhCCCcEEEEec
Confidence 666332 45777788888888888766777787653 4455555421100 12
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc--HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
.++..-++-.. ..+.++++.. .-+.-.|-.+| ++...++.++++. -=+++++|.+
T Consensus 180 ~GvTG~~~~~~-~~~~~~v~~v--r~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 180 MGVTGARNPVS-ADVKELVKRV--RKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred ccccCCCcccc-hhHHHHHHHH--HHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 23333232212 2244454432 11223333345 6666666666665 6677777643
No 214
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=71.99 E-value=1.1e+02 Score=32.16 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe----
Q 014285 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---- 281 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---- 281 (427)
+..+.++.++++|-+.+-+..-. ..+.-++.++.||+.+|++.+++| ..-|.++|.+..+. |.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~~~----G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLLEA----GAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHHHh----CCC--EEEECCc
Confidence 34567788889999998888753 345667789999999999999992 24577777766653 221 221
Q ss_pred -------C---CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 282 -------Q---PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 282 -------q---P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
+ .+-..+.....++++.++ ..++||.+|--+.+..|+.+.|..+ ++.+.+-
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~G-A~~vm~g 357 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAG-ASNVMVG 357 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcC-CCEEeec
Confidence 1 111123344444433322 3589999999999999999999876 4555554
No 215
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=71.06 E-value=54 Score=33.04 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=46.0
Q ss_pred ccC-CeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCc---------c--HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYG-ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF---------G--VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~-iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~---------G--i~~~~~~~~~A~~~gi~~~ 358 (427)
+.+ +||++.= ...+....++.++.+ ++.|.+|-|.. - +..+++++++|+++|+.+-
T Consensus 70 ~~~~VPValHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 70 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 454 8998874 556788889999985 89999999964 2 7789999999999999873
No 216
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=70.97 E-value=58 Score=31.44 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeE
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPI 307 (427)
+++...++++.+.+.+..-..+=+-+-.-..+.+.++.+.+++..++||
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 139 DLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4566666666666655432344444443333444444333333344444
No 217
>PRK05927 hypothetical protein; Provisional
Probab=70.94 E-value=47 Score=33.50 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhh----HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITAD----FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d----~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
.+++++.+.+++..+.|.+.|=+--|.+++.+ .+.++.|++.+|++.+- +||+.|--... ...|+.
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~-----~~s~~ei~~~~---~~~G~~-- 145 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPH-----FFSAVEIAHAA---QVSGIS-- 145 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCccc-----CCCHHHHHHHH---HhcCCC--
Confidence 47899999999998999999888656544444 45667777777876654 78887733332 222432
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC--CHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR--SLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLH 356 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~--~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~ 356 (427)
.-+.+++|.+ .++ .++. +.+-+.+.+. +. +-|.+....+.+++++.|++.|++
T Consensus 146 ---------~~e~l~~Lk~-----aGl-----~~l~g~~~Et~~~~~~----~~--~~p~k~~~~~rl~~i~~A~~lGi~ 200 (350)
T PRK05927 146 ---------TEQALERLWD-----AGQ-----RTIPGGGAEILSERVR----KI--ISPKKMGPDGWIQFHKLAHRLGFR 200 (350)
T ss_pred ---------HHHHHHHHHH-----cCc-----ccCCCCCchhCCHHHh----hc--cCCCCCCHHHHHHHHHHHHHcCCC
Confidence 2355666753 333 1111 1222211111 11 223333356889999999999999
Q ss_pred EEEccc
Q 014285 357 LMIDGM 362 (427)
Q Consensus 357 ~~~~s~ 362 (427)
+.-+.+
T Consensus 201 ~~sg~l 206 (350)
T PRK05927 201 STATMM 206 (350)
T ss_pred cCceeE
Confidence 865543
No 218
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.79 E-value=5.3 Score=37.70 Aligned_cols=128 Identities=20% Similarity=0.321 Sum_probs=77.6
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh-CC-CcEEEEeCCCC-------CCH---H
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HP-HCSFILDANEG-------YTS---E 261 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~-~~-~~~L~vDAN~~-------~s~---~ 261 (427)
+|+....++.+.++ ++++.+.|.. |+=+|...-+|.+.++.+.+. ++ .+-+.+|+..+ |.. -
T Consensus 74 ~~i~vgGGIrs~ed----~~~ll~~Ga~--~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~ 147 (229)
T PF00977_consen 74 IPIQVGGGIRSIED----AERLLDAGAD--RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGI 147 (229)
T ss_dssp SEEEEESSE-SHHH----HHHHHHTT-S--EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEE
T ss_pred ccEEEeCccCcHHH----HHHHHHhCCC--EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCc
Confidence 34444445566655 4456788866 555664334566778888775 44 68999998765 421 2
Q ss_pred HHHHHHHHhhhCCCCCceEeCCCCCC------ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQPVHRD------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP~~~~------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+..++++++.++++. .+|=.-+..+ |++.++++++ ...+|+...=-+.+..|++++.+.+. +.+.+
T Consensus 148 ~~~~~~~~~~~~g~~-~ii~tdi~~dGt~~G~d~~~~~~l~~----~~~~~viasGGv~~~~Dl~~l~~~G~-~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELGAG-EIILTDIDRDGTMQGPDLELLKQLAE----AVNIPVIASGGVRSLEDLRELKKAGI-DGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT-S-EEEEEETTTTTTSSS--HHHHHHHHH----HHSSEEEEESS--SHHHHHHHHHTTE-CEEEE
T ss_pred CHHHHHHHHHhcCCc-EEEEeeccccCCcCCCCHHHHHHHHH----HcCCCEEEecCCCCHHHHHHHHHCCC-cEEEE
Confidence 345566666666654 3444444332 6677777775 57899988778889999999887664 55443
No 219
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=70.77 E-value=71 Score=32.57 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeC--CCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--P~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.|+.++-+++++.|.+.|++ .||= |-. +++++.++++.+. .....++.- .-....+++.+++.+ ++.+.+
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~g-~~~i~i 94 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAKL---GLNASILAL-NRAVKSDIDASIDCG-VDAVHI 94 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHhc---CCCeEEEEE-cccCHHHHHHHHhCC-cCEEEE
Confidence 58999999999999999986 8996 432 3345666666541 223333322 223577888888875 555554
Q ss_pred CC--CC-----------cc-HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 334 KL--AK-----------FG-VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 334 k~--~~-----------~G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
=. +- -. +....+.++.|++.|+.+.+++..
T Consensus 95 ~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 95 FIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 22 11 12 355677999999999999887643
No 220
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=70.33 E-value=44 Score=33.73 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=45.7
Q ss_pred cc-CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCc-----------cHHHHHHHHHHHHHcCCcEE
Q 014285 302 TY-GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF-----------GVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~-~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~-----------Gi~~~~~~~~~A~~~gi~~~ 358 (427)
+. .+||++.= ...+....++.++.+ ++.|.+|-|.. =+..+++++++|+++|+.+-
T Consensus 72 ~~~~VPVaLHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 72 MYPDIPICLHQDHGNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred hcCCCcEEEECCCCCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45 48999874 555777889999986 79999999954 27779999999999999874
No 221
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=70.27 E-value=1.2e+02 Score=30.18 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=89.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC---Cc--------hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR---NI--------TADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~---~~--------~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~ 262 (427)
.|+..++...+++++.+.++...+.|+..+-+.++. +. +.-.+.++++|+.- ++.+.|=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 466667766778888888888777899999999873 11 11145677887742 2333333222232 4
Q ss_pred HHHHHHHhhhCCCCCc-----eEeCCCCC------------------CChhhHHHHHHhhccccCCeEEecCCCCCHHHH
Q 014285 263 AVEVLGKLNDMGVIPV-----LFEQPVHR------------------DDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~-----~iEqP~~~------------------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~ 319 (427)
..+.++.+.+.+..-. ...-++.. --++..++++ +..++||.+.=-+.+..|+
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~----~~~~ipIig~GGI~s~~Da 252 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS----GRVKASLAASGGVHDAEDV 252 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH----cccCCCEEEECCCCCHHHH
Confidence 4555555555443200 11111100 0112223343 3568999988899999999
Q ss_pred HHHHHcCCCcEEEeCCCCc--c---HHH-HHHHHHHHHHcCCc
Q 014285 320 QKVMQENLASVVNIKLAKF--G---VLG-TLQIIKATRKSGLH 356 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk~~~~--G---i~~-~~~~~~~A~~~gi~ 356 (427)
.+.+.. .++.+|+=-..+ | +.. ..++.++.+++|+.
T Consensus 253 ~e~l~a-GA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 253 VKYLLA-GADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHHHHc-CCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 998885 478888865432 4 222 23455666677754
No 222
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.23 E-value=98 Score=29.15 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=74.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCC------------CCCHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE------------GYTSE 261 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~------------~~s~~ 261 (427)
+|+....++.+.+++. ++.+.|+..+ =+|.-.- |.+.++.+-+.++++.+.+|+.+ .+++.
T Consensus 74 ~pv~~gGGIrs~edv~----~l~~~G~~~v--ivGtaa~-~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~ 146 (228)
T PRK04128 74 LKVQVGGGLRTYESIK----DAYEIGVENV--IIGTKAF-DLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVE 146 (228)
T ss_pred CCEEEcCCCCCHHHHH----HHHHCCCCEE--EECchhc-CHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHH
Confidence 5555666777877654 4456687643 4564322 67788888887777999999843 23455
Q ss_pred HHHHHHHHhhhCCCCCceEeCCCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+++++++.+.. .+|=.-+.. +...++-+|.+. ..++||...=-+.+.+|+.++.+.+ ++.+.+
T Consensus 147 ~~~~~~~~~~~-----~ii~t~i~~dGt~~G~d~l~~~---~~~~pviasGGv~~~~Dl~~l~~~g-~~gviv 210 (228)
T PRK04128 147 DAYEMLKNYVN-----RFIYTSIERDGTLTGIEEIERF---WGDEEFIYAGGVSSAEDVKKLAEIG-FSGVII 210 (228)
T ss_pred HHHHHHHHHhC-----EEEEEeccchhcccCHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 65555555521 133333432 223343355431 2467887777788888888877754 444433
No 223
>PRK08508 biotin synthase; Provisional
Probab=70.17 E-value=1e+02 Score=29.83 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe-ccC-----CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLN-VGR-----NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGV 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK-iG~-----~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l 275 (427)
.+++++.+.+++..+.|.+.|=+- -|. .++.=.+.++.||+.+|++.+. -.+|..+.+++.++-++ +..+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~-~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLI-ACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEE-ecCCCCCHHHHHHHHHcCCCEEcc
Confidence 579999999998888999888773 232 2233355667888777776542 25666676654444343 444433
Q ss_pred CCceEe----CCCCCCChhhHHHHHHhhcc-----ccCCeEEecCCCCCHHHHHHHHHcCCCcEEE-----eCCCC----
Q 014285 276 IPVLFE----QPVHRDDWSGLHDVSNFARD-----TYGISVVADESCRSLNDVQKVMQENLASVVN-----IKLAK---- 337 (427)
Q Consensus 276 ~~~~iE----qP~~~~d~~~~~~L~~~~r~-----~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~-----lk~~~---- 337 (427)
.++--+ .=++..+|+..-+..+.+++ .+++-+-++|+.....+....+....++.+- +.+..
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~ 198 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA 198 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC
Confidence 211222 12233556653322111111 1233445566655555544444444455332 32211
Q ss_pred --ccHHHHHHHHHHHHHc
Q 014285 338 --FGVLGTLQIIKATRKS 353 (427)
Q Consensus 338 --~Gi~~~~~~~~~A~~~ 353 (427)
....+.++++++|+-.
T Consensus 199 ~~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 199 PTLSADEALEIVRLAKEA 216 (279)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 1145678888888755
No 224
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=70.08 E-value=70 Score=33.77 Aligned_cols=113 Identities=16% Similarity=0.287 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC--CCCChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHH
Q 014285 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV--HRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~--~~~d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll 323 (427)
+-+|+|+++-+-++ +..+.++.|.+.++...-++.+= ..+-++..++++ ++. ++||..+ .+.+.++.++++
T Consensus 214 ~g~l~V~aai~~~~-~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~----~~~p~~~vi~g-~v~t~e~a~~l~ 287 (486)
T PRK05567 214 QGRLRVGAAVGVGA-DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIK----AKYPDVQIIAG-NVATAEAARALI 287 (486)
T ss_pred CCCEEEEeecccCc-chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHH----hhCCCCCEEEe-ccCCHHHHHHHH
Confidence 34788888877655 34677777777776644455331 112233344444 355 7897765 578889999999
Q ss_pred HcCCCcEEEeC--C---------CCcc---HHHHHHHHHHHHHcCCcEEEcccCchh
Q 014285 324 QENLASVVNIK--L---------AKFG---VLGTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 324 ~~~a~~~i~lk--~---------~~~G---i~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
+.+ +|+|.+- + .-+| ++...++++.|++.+++++..+-+-++
T Consensus 288 ~aG-ad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~ 343 (486)
T PRK05567 288 EAG-ADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYS 343 (486)
T ss_pred HcC-CCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCH
Confidence 876 6777531 1 1223 334455666677789999987655443
No 225
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=69.96 E-value=71 Score=29.72 Aligned_cols=127 Identities=14% Similarity=0.225 Sum_probs=77.0
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh-C-CCcEEEEeCCC------CCCH---HHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-H-PHCSFILDANE------GYTS---EEA 263 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~-~-~~~~L~vDAN~------~~s~---~~A 263 (427)
|+....++.+.+++ +++.+.|...+ =+|...-.|.+.+..+.+. + ..+-+.+|... +|.. ...
T Consensus 74 pi~~ggGI~~~ed~----~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~ 147 (230)
T TIGR00007 74 PVQVGGGIRSLEDV----EKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSL 147 (230)
T ss_pred CEEEeCCcCCHHHH----HHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCH
Confidence 43344455666554 44556788765 3454344566777766664 4 34777788652 2321 223
Q ss_pred HHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 264 VEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++++.+.+.+.. ..+ +.....-|++.++++++ .+++||...=-+.+.+|++++.+.+ ++.+++
T Consensus 148 ~~~~~~~~~~g~~-~ii~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 148 EELAKRLEELGLE-GIIYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred HHHHHHHHhCCCC-EEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 4566666666543 223 22223346777888875 5789998888899999999988754 666655
No 226
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=69.88 E-value=66 Score=33.11 Aligned_cols=100 Identities=15% Similarity=0.271 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC
Q 014285 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE 311 (427)
Q Consensus 232 ~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE 311 (427)
++|-.+++.+-+.+-+ -+.+|..++.|.-+ +++++...+ -. ..+.|.++
T Consensus 250 e~dK~rl~ll~~aGvd-vviLDSSqGnS~~q-iemik~iK~----------~y------------------P~l~ViaG- 298 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVD-VVILDSSQGNSIYQ-LEMIKYIKE----------TY------------------PDLQIIAG- 298 (503)
T ss_pred cchhHHHHHhhhcCCc-EEEEecCCCcchhH-HHHHHHHHh----------hC------------------CCceeecc-
Confidence 4555566655555443 35567766666444 444443332 11 12445444
Q ss_pred CCCCHHHHHHHHHcCCCcEEEe-----------CCCCcc---HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 312 SCRSLNDVQKVMQENLASVVNI-----------KLAKFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~l-----------k~~~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
++.+.++.+.||+++ +|.+.+ +.+-|| .|...++++.|+.+|++++-.+-.
T Consensus 299 NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGi 363 (503)
T KOG2550|consen 299 NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGI 363 (503)
T ss_pred ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCc
Confidence 556778888999876 565543 555666 566889999999999999876643
No 227
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=69.83 E-value=59 Score=32.79 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=45.6
Q ss_pred ccC-CeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCc-------c----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYG-ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF-------G----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~-iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~-------G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.. +||++.= ...+.+...+.++.+ ++.|.+|-|.. - +..+++++++|+++|+.+-
T Consensus 72 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 72 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 454 8998874 456778889999985 89999999966 2 7779999999999999874
No 228
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=69.76 E-value=27 Score=32.53 Aligned_cols=127 Identities=13% Similarity=0.189 Sum_probs=71.1
Q ss_pred eeeeecCCCHHHHHHHHHHHhhc-CCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 196 TAITIPAVSPAEASELASKYCKL-GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
+...+...+.++|.++++.+.+. |-..||+-.-. .-++.++.+++.+ +.+=+-.-||++||...+++-.+|
T Consensus 54 v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~g----i~v~~T~V~s~~Qa~~Aa~AGA~y- 125 (211)
T cd00956 54 VSAQVVSTDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEG----IKTNVTAIFSAAQALLAAKAGATY- 125 (211)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcC----CceeeEEecCHHHHHHHHHcCCCE-
Confidence 33444457899999999998775 55566555432 3344555555442 445555579999999888876654
Q ss_pred CCCc--eEeCCCCCCChhhHHHHHHhhccccCCe---EEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 275 VIPV--LFEQPVHRDDWSGLHDVSNFARDTYGIS---VVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 275 l~~~--~iEqP~~~~d~~~~~~L~~~~r~~~~iP---Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+.++ .+++-- .+-++.++++.+.++ +.+++ ++. ++.++.++.+++..+ +|++-+-+
T Consensus 126 vsP~vgR~~~~g-~dg~~~i~~i~~~~~-~~~~~tkil~A--s~r~~~ei~~a~~~G-ad~vTv~~ 186 (211)
T cd00956 126 VSPFVGRIDDLG-GDGMELIREIRTIFD-NYGFDTKILAA--SIRNPQHVIEAALAG-ADAITLPP 186 (211)
T ss_pred EEEecChHhhcC-CCHHHHHHHHHHHHH-HcCCCceEEec--ccCCHHHHHHHHHcC-CCEEEeCH
Confidence 3210 111110 011222222222221 34555 444 677888887777654 77766554
No 229
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=69.69 E-value=28 Score=31.66 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=66.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeC--CCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHH--HHHHH
Q 014285 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLN--DVQKV 322 (427)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~--~~~~l 322 (427)
+.+.+| ..+++++.+.++.|.+. +. |+|= |+- ..-.+..+.+++ ...++||..+-.+.+.. .++.+
T Consensus 3 ~~~a~d---~~~~~~~~~~~~~l~~~-i~--~ieig~~~~~~~g~~~i~~i~~---~~~~~~i~~~~~v~~~~~~~~~~~ 73 (202)
T cd04726 3 LQVALD---LLDLEEALELAKKVPDG-VD--IIEAGTPLIKSEGMEAVRALRE---AFPDKIIVADLKTADAGALEAEMA 73 (202)
T ss_pred eEEEEc---CCCHHHHHHHHHHhhhc-CC--EEEcCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEEeccccHHHHHHH
Confidence 445554 35789999999999998 75 9998 552 122445555653 12578998885554442 34566
Q ss_pred HHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEE
Q 014285 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 323 l~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (427)
.+.+ +|++.+...- +.....++++.++++|+.+.+
T Consensus 74 ~~aG-ad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 74 FKAG-ADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred HhcC-CCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEE
Confidence 6655 7787765432 223356788889999999985
No 230
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=69.45 E-value=20 Score=37.62 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=66.6
Q ss_pred HHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 260 SEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 260 ~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
..+|+..+-+ +.+-|-. .++|+|.-..-...+..+. ..-+||-.||+-..++.+++.++...+..+-+=|+..
T Consensus 164 ~q~al~l~~~~l~~pGd~-v~vE~PtY~~~~~~~~~~g-----~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~q 237 (459)
T COG1167 164 AQQALDLLLRLLLDPGDT-VLVEDPTYPGALQALEALG-----ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQ 237 (459)
T ss_pred HHHHHHHHHHHhCCCCCE-EEEcCCCcHHHHHHHHHcC-----CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCC
Confidence 4677776644 4444433 5999999754333333221 2346778899999999999999886677777666553
Q ss_pred ---c--H--HHHHHHHHHHHHcCCcEEEcc
Q 014285 339 ---G--V--LGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 339 ---G--i--~~~~~~~~~A~~~gi~~~~~s 361 (427)
| + ..-.+++++|+++++.++=-.
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 6 3 356789999999999987544
No 231
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=69.38 E-value=85 Score=32.82 Aligned_cols=109 Identities=15% Similarity=0.255 Sum_probs=65.6
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccc-cCCeEEecCCCCCHHHHHHH
Q 014285 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDT-YGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~-~~iPIa~dE~~~~~~~~~~l 322 (427)
-+++|++.=+-+.+ ..+.++.|-+.++. .|+=-...++ ++..+++++ + .++||.++ .+.+.++.+.+
T Consensus 211 g~l~V~aav~~~~~-~~~r~~~L~~aG~d--~I~vd~a~g~~~~~~~~i~~i~~----~~~~~~vi~G-~v~t~~~a~~l 282 (450)
T TIGR01302 211 GRLIVGAAVGTREF-DKERAEALVKAGVD--VIVIDSSHGHSIYVIDSIKEIKK----TYPDLDIIAG-NVATAEQAKAL 282 (450)
T ss_pred CCEEEEEEecCchh-HHHHHHHHHHhCCC--EEEEECCCCcHhHHHHHHHHHHH----hCCCCCEEEE-eCCCHHHHHHH
Confidence 35666666554433 34555566665653 4553332222 223344433 4 46888775 57888999999
Q ss_pred HHcCCCcEEEeCC--C---------Ccc---HHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 323 MQENLASVVNIKL--A---------KFG---VLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 323 l~~~a~~~i~lk~--~---------~~G---i~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
++.+ +|+|.+-. . -+| ++...++++.|++.+++++..+-+-+
T Consensus 283 ~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~ 338 (450)
T TIGR01302 283 IDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRY 338 (450)
T ss_pred HHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCC
Confidence 9876 78875331 1 134 34557788888899999998654433
No 232
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=69.37 E-value=36 Score=33.33 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=45.8
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~ 357 (427)
+.++||++.= +..+.+.++++++.+ ++.+.+|-|..= +..++++.++|+++|+.+
T Consensus 72 ~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 72 KMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 6788988764 445777889999885 789999999873 677999999999999987
No 233
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=69.24 E-value=20 Score=35.72 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=50.2
Q ss_pred ceeeeeee--cCCCHH-HHHHHHHHHhhcCCcEEEEeccC-----CchhhHHHHHHHHHhCCCcEEEEeCCCC-CCHHHH
Q 014285 193 SLSTAITI--PAVSPA-EASELASKYCKLGFSTLKLNVGR-----NITADFDVLQAIHAVHPHCSFILDANEG-YTSEEA 263 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~-~~~~~~~~~~~~Gf~~iKlKiG~-----~~~~d~~~l~~ir~~~~~~~L~vDAN~~-~s~~~A 263 (427)
++|+..-+ +.++.+ ...+.++...+.|-..+-+..-. ....|.+.|+.+++..++ +-|-+||. +|+++|
T Consensus 136 ~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a 213 (323)
T COG0042 136 DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDA 213 (323)
T ss_pred CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHH
Confidence 35554433 333333 12344444556678887777531 223688899999987666 88999998 799999
Q ss_pred HHHHHHh
Q 014285 264 VEVLGKL 270 (427)
Q Consensus 264 ~~~l~~L 270 (427)
.+.++.-
T Consensus 214 ~~~l~~t 220 (323)
T COG0042 214 KEMLEYT 220 (323)
T ss_pred HHHHHhh
Confidence 9998873
No 234
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=69.22 E-value=88 Score=33.28 Aligned_cols=109 Identities=18% Similarity=0.330 Sum_probs=63.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC---ChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHH
Q 014285 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD---DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~---d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~ 324 (427)
+|+|=|--+-+ .++.+.++.|-+.+..+..+--+ +-+ .|+..+++++ .. +++|..+ .+.+.++.+++++
T Consensus 236 ~l~vgaavg~~-~~~~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~----~~p~~~vi~g-~v~t~e~a~~a~~ 308 (505)
T PLN02274 236 KLLVGAAIGTR-ESDKERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKK----TYPELDVIGG-NVVTMYQAQNLIQ 308 (505)
T ss_pred CEEEEEEEcCC-ccHHHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHH----hCCCCcEEEe-cCCCHHHHHHHHH
Confidence 45554433322 34466666666655543333332 111 2345556653 34 4777654 4678899999998
Q ss_pred cCCCcEEEeC--C---------CCcc---HHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 325 ENLASVVNIK--L---------AKFG---VLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 325 ~~a~~~i~lk--~---------~~~G---i~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
.+ +|+|.+- + +.+| ++....+.+++++.+++++..+-+-+
T Consensus 309 aG-aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~ 362 (505)
T PLN02274 309 AG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISN 362 (505)
T ss_pred cC-cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCC
Confidence 75 8887552 1 1122 34556678888889999988765544
No 235
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=69.13 E-value=60 Score=30.99 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHH-HHHHH-h--CCCcEEEEeC------CCCCCHHHHHHHHHH-hh
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVL-QAIHA-V--HPHCSFILDA------NEGYTSEEAVEVLGK-LN 271 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l-~~ir~-~--~~~~~L~vDA------N~~~s~~~A~~~l~~-L~ 271 (427)
.+.+++.+.++...+.|++.|-.--.-....-.+.+ +++++ . -+++.|.-=. ...++++...+-+++ |+
T Consensus 14 ~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 14 VSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLE 93 (283)
T ss_dssp STHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 367777888888899999988765421111222223 45566 1 2344443222 233465555443332 33
Q ss_pred hCC---CCCceEeCCCCCCC-----hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH--HHcCCCcEEEeCCCCccHH
Q 014285 272 DMG---VIPVLFEQPVHRDD-----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKV--MQENLASVVNIKLAKFGVL 341 (427)
Q Consensus 272 ~~~---l~~~~iEqP~~~~d-----~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l--l~~~a~~~i~lk~~~~Gi~ 341 (427)
.++ +.+.++-.|-.... |+.+.+|.+ .+.==..|=+-++...++.+ .....++++|+..+..--.
T Consensus 94 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~ 168 (283)
T PF00248_consen 94 RLGTDYIDLLLLHWPDPSEDALEEVWEALEELKK-----EGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRR 168 (283)
T ss_dssp HHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHH-----TTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHB
T ss_pred cccccchhccccccccccccccchhhhhhhhccc-----ccccccccccccccccccccccccccccccccccccccccc
Confidence 322 22346666665444 444555543 34433444456777777777 3344577888777665112
Q ss_pred HHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 342 GTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
.-..+++.|+++|++++..+.+.+|+
T Consensus 169 ~~~~l~~~~~~~gi~v~a~~~l~~G~ 194 (283)
T PF00248_consen 169 EEEGLLEFCREHGIGVIAYSPLAGGL 194 (283)
T ss_dssp GGHHHHHHHHHTT-EEEEESTTGGGC
T ss_pred ccccccccccccccccccccccccCc
Confidence 33467778999999999988776543
No 236
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=69.03 E-value=1.1e+02 Score=29.36 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe-----ccC---CchhhHHHH----HHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 203 VSPAEASELASKYCKLGFSTLKLN-----VGR---NITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK-----iG~---~~~~d~~~l----~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
.+.+++.++++++.+.|-..|-+- .|. +.+++++++ +.+++.. ++.|.||... ++.+.+.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~---~~v~e~al~ 94 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFR---AEVARAALE 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCC---HHHHHHHHH
Confidence 367888999999999999998884 232 456677775 4444433 6789999654 444444444
No 237
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=68.83 E-value=85 Score=31.77 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCCCC---CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHR---DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~---~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.|+.++-+++++.|.+.|++ .||=-++. .+++.++++.+. ..+..++.= .-.+..+++.+++.+ ++.+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~g-~~~i~i 91 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVAL---GLPARLMAW-CRARDADIEAAARCG-VDAVHI 91 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHc---CCCcEEEEE-cCCCHHHHHHHHcCC-cCEEEE
Confidence 47999999999999999986 89994442 335666777541 122333321 124677888888765 455444
Q ss_pred CCCC--------cc------HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 334 KLAK--------FG------VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 334 k~~~--------~G------i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
=.+. .| +....+.+++|+++|+.+.++....
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~ 136 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA 136 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 2221 11 3445689999999999998876543
No 238
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=68.60 E-value=1.7e+02 Score=31.55 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV----HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~----~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
.|.+...+|+.++.++|-..+.+-+-. .+|.+.++.|++. |-.+.|..|-+- ++.-|+..++..+...+.+=
T Consensus 42 ~D~~atv~Qi~~L~~aGceiVRvtvp~--~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~A~~a~~~vdkiRINPG 117 (606)
T PRK00694 42 TDVDGTVRQICALQEWGCDIVRVTVQG--LKEAQACEHIKERLIQQGISIPLVADIHF--FPQAAMHVADFVDKVRINPG 117 (606)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhccCCCCCEEeecCC--ChHHHHHHHHhcCceEECCc
Confidence 356667889999999999998887743 5677777777763 567889988874 55556666666554333210
Q ss_pred e-------EeCCCCCC-C--------hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HH
Q 014285 279 L-------FEQPVHRD-D--------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (427)
Q Consensus 279 ~-------iEqP~~~~-d--------~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~ 341 (427)
= ++.-.-.| + .+.+..+.+.++ ..++||=.|=+.-++. +++++... .+--| +.
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ak-e~~~~IRIGvN~GSL~--~~i~~~yG-------~tpegmVe 187 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCK-RLGKAMRIGVNHGSLS--ERVMQRYG-------DTIEGMVY 187 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC-------CCHHHHHH
Confidence 0 11111000 0 122233332222 4678888887766665 45554322 13348 77
Q ss_pred HHHHHHHHHHHcCCcEEEcccCchh--HHHHHHHHHHhhc
Q 014285 342 GTLQIIKATRKSGLHLMIDGMIETR--LATGFALHLAAGL 379 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es~--ig~~a~~hlaaal 379 (427)
.+++.+++|++.|..=.+=|+=.|+ +...|.-.|+...
T Consensus 188 SAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~ 227 (606)
T PRK00694 188 SALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDL 227 (606)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHh
Confidence 8999999999998875444433333 3444444455443
No 239
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=68.48 E-value=1.1e+02 Score=29.87 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=76.9
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CCCcEEEEeCC-----------CCC-CHHHHHHHHHHhh-h
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HPHCSFILDAN-----------EGY-TSEEAVEVLGKLN-D 272 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~~~~L~vDAN-----------~~~-s~~~A~~~l~~L~-~ 272 (427)
.+++.++.||+.+-+.--. ++++.+++.+.+++. +-.++.-+.+- .++ +++||.++.++.. +
T Consensus 89 ~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD 168 (282)
T TIGR01859 89 SCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVD 168 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcC
Confidence 4455578899999888754 567778888777762 22333333221 224 6999999997431 1
Q ss_pred -----CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe-cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 273 -----MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 273 -----~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~-dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
+| +|-.+ .. .+.-+++.++++++ .+++|+.+ |=|=++..+++++++.+ ++-+++.....
T Consensus 169 ~Lavs~Gt~hg~~-~~-~~~l~~e~L~~i~~----~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~l~ 234 (282)
T TIGR01859 169 YLAAAIGTSHGKY-KG-EPGLDFERLKEIKE----LTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTDCR 234 (282)
T ss_pred EEeeccCcccccc-CC-CCccCHHHHHHHHH----HhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcHHH
Confidence 11 11011 11 23446888888876 57788854 45677888999999885 67788876543
No 240
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=68.23 E-value=1.3e+02 Score=31.55 Aligned_cols=126 Identities=10% Similarity=0.163 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHH-----hhcC----CcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 014285 204 SPAEASELASKY-----CKLG----FSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (427)
Q Consensus 204 ~~~~~~~~~~~~-----~~~G----f~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (427)
+.++..+.++.+ ...| -..|-++... +.+.=.+.++++++.. ++.|.||. ++++.+.+-++...+.
T Consensus 103 ~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~-dvPLSIDT---~dpevleaAleagad~ 178 (450)
T PRK04165 103 DDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT-DLPLILCS---EDPAVLKAALEVVADR 178 (450)
T ss_pred ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc-CCCEEEeC---CCHHHHHHHHHhcCCC
Confidence 456666666665 3334 3444444322 3333344566666542 78899996 8888888888877653
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH---HHcCCCcEEEeCCCCccHHHH
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV---MQENLASVVNIKLAKFGVLGT 343 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l---l~~~a~~~i~lk~~~~Gi~~~ 343 (427)
.--+.. +..++++.|.+++. ..+.|+.+.-. +...++++ +....+.=+++||..-|+..+
T Consensus 179 ~plI~S----at~dN~~~m~~la~----~yg~pvVv~~~--dl~~L~~lv~~~~~~GI~dIILDPg~ggf~ks 241 (450)
T PRK04165 179 KPLLYA----ATKENYEEMAELAK----EYNCPLVVKAP--NLEELKELVEKLQAAGIKDLVLDPGTENIKET 241 (450)
T ss_pred CceEEe----cCcchHHHHHHHHH----HcCCcEEEEch--hHHHHHHHHHHHHHcCCCcEEECCCCchhhhh
Confidence 211223 33578999988876 56777766322 13433332 223334668999977544443
No 241
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=67.96 E-value=73 Score=30.73 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeC--CCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
-.|+.++.+++++.|.+.|++ .||= |-.. .+.+..+.+++. .....+ .++ ...+..+++++++.+ ++.|.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~--~IEvG~P~~~~~~~~~~~~l~~~-~~~~~v-~~~--~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVD--YIELTSPAASPQSRADCEAIAKL-GLKAKI-LTH--IRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHhC-CCCCcE-EEE--ecCCHHHHHHHHHcC-cCEEE
Confidence 358999999999999999986 8998 4432 223334444321 111222 222 356788999999874 66666
Q ss_pred eCCC--------Ccc------HHHHHHHHHHHHHcCCcEEEcc
Q 014285 333 IKLA--------KFG------VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 333 lk~~--------~~G------i~~~~~~~~~A~~~gi~~~~~s 361 (427)
+=.+ +.| +..+.++++.|+++|+.+..+.
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5221 112 3446778899999999988764
No 242
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=67.85 E-value=73 Score=31.25 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=45.2
Q ss_pred CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 304 GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 304 ~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
++||++.= ...+.+..++.++.+ ++.+.+|-|..= +..+++++++|++.|+.+-
T Consensus 77 ~vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 37888864 556788889999986 899999999873 7779999999999999874
No 243
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=67.62 E-value=1e+02 Score=33.44 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEe--CCCCCCHHHHHHHHHHhhhCCCCCceEeCCCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILD--ANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vD--AN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~ 285 (427)
...++...+.|...|.+-... +.+.=...++.+++.|..+...+. .+-.++++...++++.+.+.+.+...|=+-.-
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G 173 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAG 173 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 344555566677766665543 222222234455555544443322 22235667777777777776665445555554
Q ss_pred CCChhhHHHHHHhhccccCCeEEe
Q 014285 286 RDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 286 ~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
--......+|.+.+++..++||..
T Consensus 174 ~~~P~~v~~lv~~lk~~~~~pi~~ 197 (582)
T TIGR01108 174 ILTPKAAYELVSALKKRFGLPVHL 197 (582)
T ss_pred CcCHHHHHHHHHHHHHhCCCceEE
Confidence 444444555554444455666654
No 244
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.54 E-value=1.3e+02 Score=29.51 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=92.4
Q ss_pred ceeeeee--ecCCCHHHHHHHHHHHhhcCCcEEEEe--c-----c-------CCchhhHHHHHHHHHhC--CCcEE--EE
Q 014285 193 SLSTAIT--IPAVSPAEASELASKYCKLGFSTLKLN--V-----G-------RNITADFDVLQAIHAVH--PHCSF--IL 252 (427)
Q Consensus 193 ~ip~~~~--i~~~~~~~~~~~~~~~~~~Gf~~iKlK--i-----G-------~~~~~d~~~l~~ir~~~--~~~~L--~v 252 (427)
.+|+..- .+.+++....+-++++.+.|-..+-+. + | .++++-+++|+++++.- ++..| |-
T Consensus 78 ~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ART 157 (289)
T COG2513 78 DLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIART 157 (289)
T ss_pred CCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeeh
Confidence 3554433 244567777888888888998777663 2 2 14677788999999853 45444 56
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCH-HHHHHHHHcCCCcEE
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL-NDVQKVMQENLASVV 331 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~-~~~~~ll~~~a~~~i 331 (427)
|+-..=..++|++.+++..+.|-...|.|-.- +.+.++++++.. +.++|+-.=|.-.++ .+..++-+ -.+..|
T Consensus 158 da~~~~~ld~AI~Ra~AY~eAGAD~if~~al~---~~e~i~~f~~av--~~pl~~N~t~~g~tp~~~~~~L~~-~Gv~~V 231 (289)
T COG2513 158 DALLVEGLDDAIERAQAYVEAGADAIFPEALT---DLEEIRAFAEAV--PVPLPANITEFGKTPLLTVAELAE-LGVKRV 231 (289)
T ss_pred HHHHhccHHHHHHHHHHHHHcCCcEEccccCC---CHHHHHHHHHhc--CCCeeeEeeccCCCCCcCHHHHHh-cCceEE
Confidence 66443348999999999998886544666544 367788888732 234555544433221 12233333 347776
Q ss_pred EeCCCCc-c-HHHHHHHHHHHHHcC
Q 014285 332 NIKLAKF-G-VLGTLQIIKATRKSG 354 (427)
Q Consensus 332 ~lk~~~~-G-i~~~~~~~~~A~~~g 354 (427)
..-++.. - +..+....+.....|
T Consensus 232 ~~~~~~~raa~~a~~~~~~~i~~~g 256 (289)
T COG2513 232 SYGLTAFRAALKAAEQAAREIRREG 256 (289)
T ss_pred EECcHHHHHHHHHHHHHHHHHHhcC
Confidence 6655433 1 333334444444443
No 245
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=67.17 E-value=1.3e+02 Score=29.43 Aligned_cols=102 Identities=12% Similarity=0.144 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
++++..+.++.+++.+.. .|+=-+. ...++.++++++ .+++||..-+ +.+.++.+.+.+.+ +|+|.
T Consensus 127 ~~~~~~~~i~~~~~~g~~--~i~l~~~~p~~~~~~~~~~i~~l~~----~~~~pvivK~-v~s~~~a~~a~~~G-~d~I~ 198 (299)
T cd02809 127 DREITEDLLRRAEAAGYK--ALVLTVDTPVLGRRLTWDDLAWLRS----QWKGPLILKG-ILTPEDALRAVDAG-ADGIV 198 (299)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCCHHHHHHHHH----hcCCCEEEee-cCCHHHHHHHHHCC-CCEEE
Confidence 445555555555554432 3332111 123566777764 6789998875 47788888887765 78877
Q ss_pred eCCC--C---ccHHHHHHHHHHHHHc--CCcEEEcccCchhHH
Q 014285 333 IKLA--K---FGVLGTLQIIKATRKS--GLHLMIDGMIETRLA 368 (427)
Q Consensus 333 lk~~--~---~Gi~~~~~~~~~A~~~--gi~~~~~s~~es~ig 368 (427)
+-.. . .|......+.++++.. +++++..+-+.++..
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 241 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTD 241 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHH
Confidence 7431 1 1333344445555555 499888776655443
No 246
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.11 E-value=69 Score=29.94 Aligned_cols=174 Identities=15% Similarity=0.184 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (427)
+.++..+.++.+.+.|+..|-+-....-+.+.+.++.+++..+..++..-.. ...++....++.+.+.++. ++.=.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~g~~--~i~i~ 87 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCR--ANEEDIERAVEAAKEAGID--IIRIF 87 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEE--SCHHHHHHHHHHHHHTTSS--EEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeee--ehHHHHHHHHHhhHhccCC--EEEec
Confidence 5677777888888899999777644444678888988888654444433222 3444444446666667764 55555
Q ss_pred CCCCC--------------hhhHHHHHHhhccccCCeEEe---cCCCCCHHHH----HHHHHcCCCcEEEeCCCC-cc-H
Q 014285 284 VHRDD--------------WSGLHDVSNFARDTYGISVVA---DESCRSLNDV----QKVMQENLASVVNIKLAK-FG-V 340 (427)
Q Consensus 284 ~~~~d--------------~~~~~~L~~~~r~~~~iPIa~---dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~G-i 340 (427)
++..+ ++...+..+.++ ..+..+.. |.+-++...+ +.+.+. .++.|.+.=+. .. .
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~Dt~G~~~P 165 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAK-ELGYEVAFGCEDASRTDPEELLELAEALAEA-GADIIYLADTVGIMTP 165 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHH-HTTSEEEEEETTTGGSSHHHHHHHHHHHHHH-T-SEEEEEETTS-S-H
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHH-hcCCceEeCccccccccHHHHHHHHHHHHHc-CCeEEEeeCccCCcCH
Confidence 55445 445544444433 24544443 3345566555 333344 46777665433 23 4
Q ss_pred HHHHHHHHHHH-HcC-CcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 341 LGTLQIIKATR-KSG-LHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 341 ~~~~~~~~~A~-~~g-i~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
....++++..+ ..+ +++-+|+-...+++ .+..+++..-...++
T Consensus 166 ~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla--~An~laA~~aGa~~i 210 (237)
T PF00682_consen 166 EDVAELVRALREALPDIPLGFHAHNDLGLA--VANALAALEAGADRI 210 (237)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEBBTTS-H--HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCccch--hHHHHHHHHcCCCEE
Confidence 45666655554 445 67777765444444 333444433233444
No 247
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=66.82 E-value=76 Score=32.52 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC--------CC------CChhhHHHHHHhhc
Q 014285 235 FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV--------HR------DDWSGLHDVSNFAR 300 (427)
Q Consensus 235 ~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~--------~~------~d~~~~~~L~~~~r 300 (427)
++.++.+++.+|++.+.+---+.++.++-.++++.+++.+.. .||==+ +. .+.+..+++++.++
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD--~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk 178 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVD--ALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWIN 178 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHH
Confidence 333444545556667777766667777777777777776643 677322 11 24455666665555
Q ss_pred cccCCeEEe
Q 014285 301 DTYGISVVA 309 (427)
Q Consensus 301 ~~~~iPIa~ 309 (427)
+.+.+||..
T Consensus 179 ~~~~iPv~v 187 (385)
T PLN02495 179 AKATVPVWA 187 (385)
T ss_pred HhhcCceEE
Confidence 555667654
No 248
>PRK08185 hypothetical protein; Provisional
Probab=66.73 E-value=86 Score=30.71 Aligned_cols=120 Identities=12% Similarity=0.192 Sum_probs=74.8
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEEE----------eCCCC-C-CHHHHHHHHHHh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFIL----------DANEG-Y-TSEEAVEVLGKL-- 270 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~v----------DAN~~-~-s~~~A~~~l~~L-- 270 (427)
+++.++.||+.+-+.-.. ++++.++..+.+.+. +- +.+|-. +.+.. + +++||.++.+..
T Consensus 84 i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~Tgv 163 (283)
T PRK08185 84 VMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGV 163 (283)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCC
Confidence 445568899999998764 677888887777752 21 122211 11111 4 699999999874
Q ss_pred hhCCC-----CCceEeCCC-CCCChhhHHHHHHhhccccCCeEEec-CCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 271 NDMGV-----IPVLFEQPV-HRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 271 ~~~~l-----~~~~iEqP~-~~~d~~~~~~L~~~~r~~~~iPIa~d-E~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+-+.+ |- -++..+ +.-+++.++++++ .+++|+.+- =+-...++++++++.+ +.=||+....
T Consensus 164 D~LAvaiGt~HG-~y~~~~kp~L~~e~l~~I~~----~~~iPLVlHGgsg~~~e~~~~ai~~G-I~KiNi~T~l 231 (283)
T PRK08185 164 DTLAVAIGTAHG-IYPKDKKPELQMDLLKEINE----RVDIPLVLHGGSANPDAEIAESVQLG-VGKINISSDM 231 (283)
T ss_pred CEEEeccCcccC-CcCCCCCCCcCHHHHHHHHH----hhCCCEEEECCCCCCHHHHHHHHHCC-CeEEEeChHH
Confidence 22222 31 123332 3446888898876 578988654 4667788899999876 4446665433
No 249
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=66.67 E-value=1.3e+02 Score=32.11 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=82.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC-chhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHhh
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-~~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~ 271 (427)
+.+.+.++.. .+..++++.++++|-..+-+..... -..-++.++.||+.+|+..+++ |. -|.++|...++.
T Consensus 237 l~vgaavg~~--~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~~a-- 309 (505)
T PLN02274 237 LLVGAAIGTR--ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---VTMYQAQNLIQA-- 309 (505)
T ss_pred EEEEEEEcCC--ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---CCHHHHHHHHHc--
Confidence 3444444432 2335678888899999888887542 2344577888888888877764 54 366777666653
Q ss_pred hCCCCCceE--------eCCC------C-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 272 DMGVIPVLF--------EQPV------H-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 272 ~~~l~~~~i--------EqP~------~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
+.....+ .-+. + ...+..++++++ ..++||.+|--+.+..++.++|..+ ++.+++--.
T Consensus 310 --GaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~----~~~vpVIadGGI~~~~di~kAla~G-A~~V~vGs~ 382 (505)
T PLN02274 310 --GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA----QHGVPVIADGGISNSGHIVKALTLG-ASTVMMGSF 382 (505)
T ss_pred --CcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEchh
Confidence 2210011 0111 0 113444566654 5789999999999999999999986 556665433
Q ss_pred Ccc
Q 014285 337 KFG 339 (427)
Q Consensus 337 ~~G 339 (427)
..|
T Consensus 383 ~~~ 385 (505)
T PLN02274 383 LAG 385 (505)
T ss_pred hcc
Confidence 333
No 250
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=66.61 E-value=1.4e+02 Score=29.40 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+++ +.+++.+.+=.. . +.+++++.++..++.|..
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 67788888999999999887654321 23333455666666 456788887664 5 889999999999998865
Q ss_pred CceEeCCCCC-CC----hhhHHHHHHhhccccCCeEEecC---CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 277 PVLFEQPVHR-DD----WSGLHDVSNFARDTYGISVVADE---SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 277 ~~~iEqP~~~-~d----~~~~~~L~~~~r~~~~iPIa~dE---~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
-..+=-|... .+ .+-++++++ .+++||.+=. ...+.+.+.++.+. .+.++-+|-+ .| +....+++
T Consensus 104 av~~~pP~y~~~~~~~i~~~f~~va~----~~~lpi~lYn~~g~~l~~~~l~~L~~~-~pni~giK~s-~~d~~~~~~~~ 177 (303)
T PRK03620 104 GILLLPPYLTEAPQEGLAAHVEAVCK----STDLGVIVYNRDNAVLTADTLARLAER-CPNLVGFKDG-VGDIELMQRIV 177 (303)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEeC-CCCHHHHHHHH
Confidence 3344444321 11 223455654 6789987643 22345556667633 3688899987 46 77666665
Q ss_pred HHHHHcCCcEEEc
Q 014285 348 KATRKSGLHLMID 360 (427)
Q Consensus 348 ~~A~~~gi~~~~~ 360 (427)
+.. .-++.+..+
T Consensus 178 ~~~-~~~f~vl~G 189 (303)
T PRK03620 178 RAL-GDRLLYLGG 189 (303)
T ss_pred HHc-CCCeEEEeC
Confidence 432 235555555
No 251
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=66.57 E-value=87 Score=29.84 Aligned_cols=127 Identities=15% Similarity=0.025 Sum_probs=79.0
Q ss_pred eeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCC--C--------CCC--HHHHH
Q 014285 198 ITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDAN--E--------GYT--SEEAV 264 (427)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN--~--------~~s--~~~A~ 264 (427)
...++.+.+++ +.+.+.|... +=+|--.-++.+.++.+.+.+ .++-+.+|+. + +|+ .....
T Consensus 79 vgGGIrs~e~~----~~~l~~Ga~~--vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~ 152 (243)
T TIGR01919 79 LSGGRRDDSSL----RAALTGGRAR--VNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLE 152 (243)
T ss_pred EcCCCCCHHHH----HHHHHcCCCE--EEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHH
Confidence 44456676654 4456777664 455643234667777777765 4678899984 2 242 22345
Q ss_pred HHHHHhhhCCCCCceEeCCCCCC------ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH--cCCCcEEEeCC
Q 014285 265 EVLGKLNDMGVIPVLFEQPVHRD------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ--ENLASVVNIKL 335 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqP~~~~------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~--~~a~~~i~lk~ 335 (427)
++++.++++++. .+|=.-+..+ |++.++++++ .+.+||...=-+.+..|++++-+ ...++.+.+--
T Consensus 153 ~~~~~~~~~g~~-~ii~tdI~~dGt~~G~d~~l~~~l~~----~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 153 VLERLLDSGGCS-RVVVTDSKKDGLSGGPNELLLEVVAA----RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred HHHHHHHhCCCC-EEEEEecCCcccCCCcCHHHHHHHHh----hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 677777777653 3444444332 6677777775 57889988778889999987632 33566655533
No 252
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.50 E-value=1.3e+02 Score=29.04 Aligned_cols=158 Identities=13% Similarity=0.189 Sum_probs=81.7
Q ss_pred eeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------------CchhhHHHHHHHHHhCCC--cEEE
Q 014285 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVHPH--CSFI 251 (427)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------------~~~~d~~~l~~ir~~~~~--~~L~ 251 (427)
.|.+.+.-+.+...+.+..+.+.|-..+-+-+-- .+++-++.++++|+..++ +-+|
T Consensus 16 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm 95 (258)
T PRK13111 16 PYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM 95 (258)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3566666677777777777878888887776521 123446677777754444 3466
Q ss_pred EeCCCCC--CHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC-eEEecCCCCCHHHHHHHHHcCCC
Q 014285 252 LDANEGY--TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI-SVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 252 vDAN~~~--s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i-PIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
--.|--| ..+ ++++.+++.++.- .|==-++.++.+.+.+.++ +.++ +|.+==.-.+...++.+. ..+.
T Consensus 96 ~Y~N~i~~~G~e---~f~~~~~~aGvdG-viipDLp~ee~~~~~~~~~----~~gl~~I~lvap~t~~eri~~i~-~~s~ 166 (258)
T PRK13111 96 TYYNPIFQYGVE---RFAADAAEAGVDG-LIIPDLPPEEAEELRAAAK----KHGLDLIFLVAPTTTDERLKKIA-SHAS 166 (258)
T ss_pred ecccHHhhcCHH---HHHHHHHHcCCcE-EEECCCCHHHHHHHHHHHH----HcCCcEEEEeCCCCCHHHHHHHH-HhCC
Confidence 6667543 344 4666666655431 1212344445555555554 3343 222111112233344333 3345
Q ss_pred cEEEeCCCCccHH--------HHHHHHHHHHHc-CCcEEEcccC
Q 014285 329 SVVNIKLAKFGVL--------GTLQIIKATRKS-GLHLMIDGMI 363 (427)
Q Consensus 329 ~~i~lk~~~~Gi~--------~~~~~~~~A~~~-gi~~~~~s~~ 363 (427)
++|-. ++..|.| ...+.++..+++ +++++++.-+
T Consensus 167 gfIY~-vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI 209 (258)
T PRK13111 167 GFVYY-VSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGI 209 (258)
T ss_pred CcEEE-EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEccc
Confidence 54432 2223322 234455555554 8888887644
No 253
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=66.50 E-value=36 Score=34.51 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC---CchhhHHHHHHHHHh--CCCcEEEEeCCCC------CCHHHHHHHHHHhhh
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR---NITADFDVLQAIHAV--HPHCSFILDANEG------YTSEEAVEVLGKLND 272 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~---~~~~d~~~l~~ir~~--~~~~~L~vDAN~~------~s~~~A~~~l~~L~~ 272 (427)
+.++..+.++++.+.||+.+=.-+.. +.+.-.++++.+-+. --++++++|.|.. ++.++ ++.++.+.=
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~d-l~~~~~lGi 90 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDD-LSFFKELGI 90 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTB-THHHHHHT-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHH-HHHHHHcCC
Confidence 56777888888889999877666653 223334555555442 3579999999976 34333 223333332
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC-----CcEEEeCCCC-cc--HHHHH
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL-----ASVVNIKLAK-FG--VLGTL 344 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a-----~~~i~lk~~~-~G--i~~~~ 344 (427)
-++ =+-+-+. .+..++|++ + ++.|.+.=|..+..++..+++.++ .-.-|.-|-. .| ..-..
T Consensus 91 ~~l---RlD~Gf~---~~~ia~ls~----n-g~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~ 159 (357)
T PF05913_consen 91 DGL---RLDYGFS---GEEIAKLSK----N-GIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFI 159 (357)
T ss_dssp SEE---EESSS-S---CHHHHHHTT----T--SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHH
T ss_pred CEE---EECCCCC---HHHHHHHHh----C-CCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHH
Confidence 222 2444443 467788874 4 899999999888888888877653 1112233322 37 45578
Q ss_pred HHHHHHHHcCCcEE
Q 014285 345 QIIKATRKSGLHLM 358 (427)
Q Consensus 345 ~~~~~A~~~gi~~~ 358 (427)
+.-++-+++|++++
T Consensus 160 ~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 160 EKNQLLKEYGIKTA 173 (357)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred HHHHHHHHCCCcEE
Confidence 88888999999975
No 254
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=66.04 E-value=16 Score=35.92 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=44.7
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+.+.+++.++.+ ++.|.+|.|..- +..++++.++|+++|+.+-
T Consensus 71 ~~~vPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 71 EASVPVALHLDHGKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HSTSEEEEEEEEE-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HcCCCEEeecccCCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 5789998863 566788889999985 899999999873 7789999999999998874
No 255
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=65.96 E-value=53 Score=33.23 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=45.1
Q ss_pred ccCCeEEecC-CCCCH--HHHHHHHHcC----------CCcEEEeCCCCc--c--HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSL--NDVQKVMQEN----------LASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~--~~~~~ll~~~----------a~~~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+. +.++++++.+ .++.+++|-|.. - +..+++++++|++.|+.+-
T Consensus 97 ~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVE 170 (357)
T TIGR01520 97 HYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLE 170 (357)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 6789999874 33454 4468888876 389999999987 3 7779999999999999874
No 256
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=65.92 E-value=77 Score=28.72 Aligned_cols=91 Identities=13% Similarity=0.238 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccC-CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
+++++.+.++.+.+.|+. ++|=.++..++ +.++.+++ ..+ +.|..+ .+.+..++..+++.+ .+++..-
T Consensus 14 ~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~----~~~~~~iGag-~v~~~~~~~~a~~~G-a~~i~~p-- 83 (190)
T cd00452 14 DAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRK----EFPEALIGAG-TVLTPEQADAAIAAG-AQFIVSP-- 83 (190)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcC-CCEEEcC--
Confidence 689999999999999986 99999875543 34566664 343 555554 567788898888876 5666421
Q ss_pred CccHHHHHHHHHHHHHcCCcEEEcccC
Q 014285 337 KFGVLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
|. ..++.+.++.+|++++++.+.
T Consensus 84 --~~--~~~~~~~~~~~~~~~i~gv~t 106 (190)
T cd00452 84 --GL--DPEVVKAANRAGIPLLPGVAT 106 (190)
T ss_pred --CC--CHHHHHHHHHcCCcEECCcCC
Confidence 21 146777888999999998763
No 257
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=65.52 E-value=47 Score=32.17 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhh-cCCcEEEEeccCCchhhHHHHHHHHHhC-C-----CcEEEEe-CCCCC-----C---HHHHHHHH
Q 014285 204 SPAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIHAVH-P-----HCSFILD-ANEGY-----T---SEEAVEVL 267 (427)
Q Consensus 204 ~~~~~~~~~~~~~~-~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-----~~~L~vD-AN~~~-----s---~~~A~~~l 267 (427)
++++..+.+.+..+ .|-..+|+--| ++-.++++++++.+ | ++.=+-| ..++| + .+++++.+
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra 167 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDA 167 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHH
Confidence 56776666655556 89999999876 34467788888754 2 0111111 11222 3 45778888
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
+++++.|....++|-+ +. +..+++++ +.++|+.
T Consensus 168 ~a~~eAGA~~i~lE~v-~~---~~~~~i~~----~l~iP~i 200 (264)
T PRK00311 168 KALEEAGAFALVLECV-PA---ELAKEITE----ALSIPTI 200 (264)
T ss_pred HHHHHCCCCEEEEcCC-CH---HHHHHHHH----hCCCCEE
Confidence 8999988665577777 32 56777876 5778874
No 258
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=64.64 E-value=69 Score=31.77 Aligned_cols=95 Identities=15% Similarity=0.293 Sum_probs=60.2
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEE----------EEeCCC-CC-CHHHHHHHHHHhhh
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF----------ILDANE-GY-TSEEAVEVLGKLND 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L----------~vDAN~-~~-s~~~A~~~l~~L~~ 272 (427)
+++.++.||+.+-+.... ++++.++.-+.+.+. += +.+| ..+.+. -| +|++|.+|.++..-
T Consensus 90 i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~Tgv 169 (307)
T PRK05835 90 CEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQV 169 (307)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCC
Confidence 445678999999999775 788888888877662 20 1222 111121 15 49999999986421
Q ss_pred ------CC-CCCceE--eCCCCCCChhhHHHHHHhhccccCCeEEecCC
Q 014285 273 ------MG-VIPVLF--EQPVHRDDWSGLHDVSNFARDTYGISVVADES 312 (427)
Q Consensus 273 ------~~-l~~~~i--EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~ 312 (427)
+| .|=.|- .+| .-|++-++++++ .+++|+.+.=.
T Consensus 170 D~LAvaiGt~HG~Yk~~~~p--~L~f~~L~~I~~----~~~iPLVLHGg 212 (307)
T PRK05835 170 DYLAPAIGTSHGAFKFKGEP--KLDFERLQEVKR----LTNIPLVLHGA 212 (307)
T ss_pred CEEEEccCccccccCCCCCC--ccCHHHHHHHHH----HhCCCEEEeCC
Confidence 11 111132 444 458899999976 67899987653
No 259
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=64.59 E-value=45 Score=35.34 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHhhhCCCCCceEe--CCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 253 DANEG----YTSEEAVEVLGKLNDMGVIPVLFE--QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 253 DAN~~----~s~~~A~~~l~~L~~~~l~~~~iE--qP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
|.+|+ |+.++-+++++.|.++|+. +|| =|.. +.|++..+++++ ...-+-...=.-....++++.++.
T Consensus 11 DG~Q~~g~~~s~e~K~~ia~~L~~~GV~--~IEvG~p~~s~~d~e~v~~i~~----~~~~~~i~al~r~~~~did~a~~a 84 (494)
T TIGR00973 11 DGEQSPGASLTVEEKLQIALALERLGVD--IIEAGFPVSSPGDFEAVQRIAR----TVKNPRVCGLARCVEKDIDAAAEA 84 (494)
T ss_pred ccCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHH----hCCCCEEEEEcCCCHHhHHHHHHh
Q ss_pred CC------CcEE----------EeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 326 NL------ASVV----------NIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 326 ~a------~~~i----------~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
.. ++++ +++.++-. +..+.+.+++|+++|..+..+....+..-......++...
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~ 155 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAA 155 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHH
No 260
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.57 E-value=87 Score=32.30 Aligned_cols=136 Identities=20% Similarity=0.233 Sum_probs=83.7
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHh
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L 270 (427)
++.+.+.++.. ++ ..+.++.++++|-..|-+.... +-+.-.+.++.+|+.+|+..+++ |. -|.++|...++.=
T Consensus 141 ~l~v~aavg~~-~~-~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V---~T~e~a~~l~~aG 215 (404)
T PRK06843 141 KLRVGAAVSID-ID-TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI---VTKEAALDLISVG 215 (404)
T ss_pred CeEEEEEEeCC-HH-HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec---CCHHHHHHHHHcC
Confidence 34444555432 33 4567888889999999988864 33455678999999899877654 43 3677777666531
Q ss_pred hh---CCCCCce-----EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 271 ND---MGVIPVL-----FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 271 ~~---~~l~~~~-----iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.+ .++.+.. .-.-+...++..+..+++.+ +..++||.+|--+.+..|+.+++..+ ++.+++--
T Consensus 216 aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~-~~~~vpVIAdGGI~~~~Di~KALalG-A~aVmvGs 286 (404)
T PRK06843 216 ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC-KNTNICIIADGGIRFSGDVVKAIAAG-ADSVMIGN 286 (404)
T ss_pred CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEcc
Confidence 11 1110000 00111112455554444322 25789999999999999999999876 56666543
No 261
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=64.30 E-value=85 Score=30.69 Aligned_cols=93 Identities=13% Similarity=0.243 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeC---------CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ---------PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq---------P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
.|+.++-+++++.|.+.|+. .||= |-..+.++.+++|.+ ..+..+.. -+.+..+++++++.+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~--~IEvgsf~~p~~~p~~~d~~e~~~~l~~----~~~~~~~~--l~~~~~~ie~A~~~g- 92 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLS--YIEVASFVSPKWVPQMADAAEVMAGIQR----RPGVTYAA--LTPNLKGLEAALAAG- 92 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCC--EEEeCCCcCcccccccccHHHHHHhhhc----cCCCeEEE--EecCHHHHHHHHHcC-
Confidence 57899999999999999985 8995 333444555666643 22344432 235888999988875
Q ss_pred CcEEEeCCC--------Ccc------HHHHHHHHHHHHHcCCcEE
Q 014285 328 ASVVNIKLA--------KFG------VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 328 ~~~i~lk~~--------~~G------i~~~~~~~~~A~~~gi~~~ 358 (427)
++.+.+=.+ +.| +....+.++.|+++|+.+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 555544322 222 2236689999999999874
No 262
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=63.05 E-value=1.5e+02 Score=28.78 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC------CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+++.|.+.+=+--.. ..++=.+.++.+.+. .+++.+.+=.. . +.+++++.++..++.|..
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 67778888999999999887665431 233334456666663 45677777664 4 889999999999998765
Q ss_pred CceEeCCCCC-CChh----hHHHHHHhhccccCCeEEecC---CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 277 PVLFEQPVHR-DDWS----GLHDVSNFARDTYGISVVADE---SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 277 ~~~iEqP~~~-~d~~----~~~~L~~~~r~~~~iPIa~dE---~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
-..+=-|... -+.+ -++++++ .+++||.+=. ...+++.+.++.+. .+.++-+|-+ .| +....+++
T Consensus 97 ~v~~~pP~y~~~~~~~i~~~f~~v~~----~~~~pi~lYn~~g~~l~~~~l~~L~~~-~pnivgiKds-~~d~~~~~~~~ 170 (289)
T cd00951 97 GILLLPPYLTEAPQEGLYAHVEAVCK----STDLGVIVYNRANAVLTADSLARLAER-CPNLVGFKDG-VGDIELMRRIV 170 (289)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEEEEEeC-CCCHHHHHHHH
Confidence 3344444321 1223 3455554 5789987753 23456666777641 3688888876 46 77666654
Q ss_pred HHHHHcCCcEEEcc
Q 014285 348 KATRKSGLHLMIDG 361 (427)
Q Consensus 348 ~~A~~~gi~~~~~s 361 (427)
+.. ..++.+..+.
T Consensus 171 ~~~-~~~~~v~~G~ 183 (289)
T cd00951 171 AKL-GDRLLYLGGL 183 (289)
T ss_pred Hhc-CCCeEEEeCC
Confidence 332 2356665553
No 263
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=62.46 E-value=1.5e+02 Score=28.58 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=65.2
Q ss_pred eeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------------CchhhHHHHHHHHHhC-CCcEEEE
Q 014285 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVH-PHCSFIL 252 (427)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------------~~~~d~~~l~~ir~~~-~~~~L~v 252 (427)
.|.+.+.-+.+...+.++.+.+.|-..+-+-+-. .+++-++.++.+|+.. --+-||.
T Consensus 19 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~ 98 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFT 98 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3556666677777777888888888887776621 1233456667777531 1234787
Q ss_pred eCCCC------------------------CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 253 DANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 253 DAN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
=.|-- ..++++.++.+.+.++++...++=-|-.+ .+.++++++
T Consensus 99 Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~--~eri~~i~~ 165 (263)
T CHL00200 99 YYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS--KSRIQKIAR 165 (263)
T ss_pred cccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHH
Confidence 77732 24578888999999999876677777753 345566654
No 264
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=62.29 E-value=1.8e+02 Score=29.29 Aligned_cols=129 Identities=17% Similarity=0.262 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (427)
.++++-.+.+++....-...+-+-+|.. ++|.++++++.+.++.+ -|.||...+++... ++.++.+.+. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~-i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEHF-VEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHhh-----C--
Confidence 3566655555553333234445566653 57899999999986544 46789999988443 5555555441 1
Q ss_pred CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC--C-----CC----cc---HHHHHHHH
Q 014285 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK--L-----AK----FG---VLGTLQII 347 (427)
Q Consensus 282 qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk--~-----~~----~G---i~~~~~~~ 347 (427)
.+.+|..| ++.+.++.+++++.+ +|.+.+- | ++ +| ++...+++
T Consensus 149 ---------------------p~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 ---------------------PEHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred ---------------------CCCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 12445444 567888999999875 7776533 1 11 12 55567778
Q ss_pred HHHHHcCCcEEEcccC
Q 014285 348 KATRKSGLHLMIDGMI 363 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~ 363 (427)
+.|+.++++++..+-+
T Consensus 206 ~aa~~~~v~VIaDGGI 221 (343)
T TIGR01305 206 DAAHGLKGHIISDGGC 221 (343)
T ss_pred HHhccCCCeEEEcCCc
Confidence 8888889999887644
No 265
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=62.21 E-value=1.6e+02 Score=31.05 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=16.0
Q ss_pred HHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 242 r~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
.+.|.+.--..|..|..+|.++.++++++.+
T Consensus 173 ~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 173 VEMGADSICIKDMAGILTPKAAKELVSGIKA 203 (468)
T ss_pred HHcCCCEEEECCCCCCcCHHHHHHHHHHHHh
Confidence 3334444444555555555555555555544
No 266
>PLN02321 2-isopropylmalate synthase
Probab=62.10 E-value=69 Score=35.09 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe--CCC-CCCChhhHHHHHHhhccccCC------eEEecCCCCCHHHHHHHHHcC-
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFE--QPV-HRDDWSGLHDVSNFARDTYGI------SVVADESCRSLNDVQKVMQEN- 326 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE--qP~-~~~d~~~~~~L~~~~r~~~~i------PIa~dE~~~~~~~~~~ll~~~- 326 (427)
.++.+|-+++++.|.+.|+. .|| =|. .++|++.++++.+.+. -.+ |....=.-.+..++++.++..
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd--~IEvGfP~~Sp~D~e~vr~i~~~~~--~~v~~~~~v~~i~a~~ra~~~dId~A~~al~ 179 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVD--IIEAGFPIASPDDLEAVKTIAKEVG--NEVDEDGYVPVICGLSRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCcCCCccHHHHHHHHHHhcc--cCCCccccceeeeeehhccHHhHHHHHHHhc
Confidence 37899999999999999986 999 464 4678888888865211 111 221111223667777777652
Q ss_pred -C----CcEEE----------eCCCCcc-HHHHHHHHHHHHHcCC-cEEEccc
Q 014285 327 -L----ASVVN----------IKLAKFG-VLGTLQIIKATRKSGL-HLMIDGM 362 (427)
Q Consensus 327 -a----~~~i~----------lk~~~~G-i~~~~~~~~~A~~~gi-~~~~~s~ 362 (427)
+ ++++. ++.++-- +..+.+.+++|+++|. .+..++.
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E 232 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE 232 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc
Confidence 1 22222 1111112 4446788999999988 4777664
No 267
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.63 E-value=1.3e+02 Score=32.03 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccccC--CeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYG--ISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~~~--iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
+++++.+.++.|-+.++. .||=+..++. .+..+++++ ..+ ++|.+| ++.+.++.+.+++.+ +|+|.
T Consensus 239 ~~~~~~~ra~~Lv~aGvd--~i~vd~a~g~~~~~~~~i~~ir~----~~~~~~~V~aG-nV~t~e~a~~li~aG-Ad~I~ 310 (502)
T PRK07107 239 NTRDYAERVPALVEAGAD--VLCIDSSEGYSEWQKRTLDWIRE----KYGDSVKVGAG-NVVDREGFRYLAEAG-ADFVK 310 (502)
T ss_pred ChhhHHHHHHHHHHhCCC--eEeecCcccccHHHHHHHHHHHH----hCCCCceEEec-cccCHHHHHHHHHcC-CCEEE
Confidence 445788899999988875 7887776665 555666654 343 777776 677889999999986 57765
Q ss_pred e--CCC-----C----cc---HHHHHHHHHHHH----HcC--CcEEEcccC
Q 014285 333 I--KLA-----K----FG---VLGTLQIIKATR----KSG--LHLMIDGMI 363 (427)
Q Consensus 333 l--k~~-----~----~G---i~~~~~~~~~A~----~~g--i~~~~~s~~ 363 (427)
+ -+. + +| ++...++++.++ ++| ++++..+-+
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGi 361 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGI 361 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCC
Confidence 4 112 2 34 344444444433 347 888877654
No 268
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=61.38 E-value=1.1e+02 Score=30.44 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=60.1
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEEE-----e----CCCCC-CHHHHHHHHHHh---
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFIL-----D----ANEGY-TSEEAVEVLGKL--- 270 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~v-----D----AN~~~-s~~~A~~~l~~L--- 270 (427)
.+.+.++.||+.+-+.... ++++.++..+.+.+. += +.+|-- | .+..| +|++|.+|+++.
T Consensus 100 ~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD 179 (321)
T PRK07084 100 LCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVD 179 (321)
T ss_pred HHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCC
Confidence 3456678999999999774 788888888777662 11 222221 1 11225 599999999863
Q ss_pred --hh-CC-CCCceEeCC---CCCCChhhHHHHHHhhcccc-CCeEEecC
Q 014285 271 --ND-MG-VIPVLFEQP---VHRDDWSGLHDVSNFARDTY-GISVVADE 311 (427)
Q Consensus 271 --~~-~~-l~~~~iEqP---~~~~d~~~~~~L~~~~r~~~-~iPIa~dE 311 (427)
+- .| .|=.|-..| -+.-|++-++++++ .+ ++|+.+.=
T Consensus 180 ~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~----~~~~vPLVLHG 224 (321)
T PRK07084 180 SLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEK----RIPGFPIVLHG 224 (321)
T ss_pred EEeeccccccccccCCCCCCCCccCHHHHHHHHH----hcCCCCEEEeC
Confidence 21 11 221244422 13457888998876 56 69998754
No 269
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=61.10 E-value=2.5e+02 Score=30.53 Aligned_cols=163 Identities=11% Similarity=0.095 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV----HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~----~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
.|.+...+++.++.++|-..+.+-+-. .+|.+.++.|++. |-++.|..|-+-.+. -|+..++..+...+.+=
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~--~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~--~A~~a~~~v~kiRINPG 113 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQG--VREAENLMNINIGLRSQGYMVPLVADVHFNPK--VADVAAQYAEKVRINPG 113 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcH--HHHHHHHhhCCEEECCC
Confidence 356677889999999999998887743 5677777777763 567999999875554 35666665554333211
Q ss_pred eEeCC---C-----CCCCh--------hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HH
Q 014285 279 LFEQP---V-----HRDDW--------SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (427)
Q Consensus 279 ~iEqP---~-----~~~d~--------~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~ 341 (427)
=|=.+ + ..+++ +.+..+.+.++ ..++||=.|-+.-++. +++++... .+--| +.
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak-~~~~~iRIGvN~GSL~--~~i~~~yg-------~tpe~mVe 183 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICK-ENHTAIRIGVNHGSLS--DRIMSRYG-------DTPEGMVE 183 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC-------CChHHHHH
Confidence 11111 0 00010 12222333222 4678888887766665 44554321 13347 67
Q ss_pred HHHHHHHHHHHcCCcEEEcccCc--hhHHHHHHHHHHhhc
Q 014285 342 GTLQIIKATRKSGLHLMIDGMIE--TRLATGFALHLAAGL 379 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~e--s~ig~~a~~hlaaal 379 (427)
.+++.+++|++.|..=++=|+=. ......+.-.++..+
T Consensus 184 SAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 184 SCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 78888999998887644333222 233444444455544
No 270
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=61.08 E-value=1e+02 Score=31.19 Aligned_cols=98 Identities=16% Similarity=0.310 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC---C
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA---K 337 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~---~ 337 (427)
+..+.++.|-+.+.....|- ...++-+...+..+.+|+..+ +||..| ++.+.+.+++|++.+ +|++.+-.. -
T Consensus 108 ~~~er~~~L~~agvD~ivID--~a~g~s~~~~~~ik~ik~~~~~~~viaG-NV~T~e~a~~L~~aG-ad~vkVGiGpGsi 183 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVID--SAHGHSEHVIDMIKKIKKKFPDVPVIAG-NVVTYEGAKDLIDAG-ADAVKVGIGPGSI 183 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE---SSTTSHHHHHHHHHHHHHSTTSEEEEE-EE-SHHHHHHHHHTT--SEEEESSSSSTT
T ss_pred HHHHHHHHHHHcCCCEEEcc--ccCccHHHHHHHHHHHHHhCCCceEEec-ccCCHHHHHHHHHcC-CCEEEEeccCCcc
Confidence 34556666655554322232 112222222222222233455 899888 488899999999987 888776532 1
Q ss_pred c--------c---HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 338 F--------G---VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 338 ~--------G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
| | +|...++++.|++++++++-.+-+
T Consensus 184 CtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi 220 (352)
T PF00478_consen 184 CTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGI 220 (352)
T ss_dssp BHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-
T ss_pred cccccccccCCcHHHHHHHHHHHhhhccCceeecCCc
Confidence 2 3 667789999999999999987644
No 271
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=60.94 E-value=51 Score=31.71 Aligned_cols=77 Identities=8% Similarity=0.127 Sum_probs=60.0
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (427)
-|+-.-.++++.++++++ .+.+||..-.-+....++..+...+ +|++.+..+........++++.|+..|+.+++
T Consensus 91 te~~~f~g~~~~l~~v~~----~v~iPvl~kdfi~~~~qi~~a~~~G-AD~VlLi~~~l~~~~l~~li~~a~~lGl~~lv 165 (260)
T PRK00278 91 TDERFFQGSLEYLRAARA----AVSLPVLRKDFIIDPYQIYEARAAG-ADAILLIVAALDDEQLKELLDYAHSLGLDVLV 165 (260)
T ss_pred cccccCCCCHHHHHHHHH----hcCCCEEeeeecCCHHHHHHHHHcC-CCEEEEEeccCCHHHHHHHHHHHHHcCCeEEE
Confidence 355555677888888875 5789999877777777887777765 89999988776666788899999999999875
Q ss_pred cc
Q 014285 360 DG 361 (427)
Q Consensus 360 ~s 361 (427)
-.
T Consensus 166 ev 167 (260)
T PRK00278 166 EV 167 (260)
T ss_pred Ee
Confidence 43
No 272
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=60.73 E-value=34 Score=34.46 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=39.4
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc--------c-HH-HHHHHHHHHHHcCCcEEEccc
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF--------G-VL-GTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~--------G-i~-~~~~~~~~A~~~gi~~~~~s~ 362 (427)
.+++|+.+|=+..- .-....++. +|-+.+.|..+ | +. ...++++.|+++|+++-++-.
T Consensus 72 g~~iPlVADIHFd~-~lAl~a~~~--v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN 139 (359)
T PF04551_consen 72 GSPIPLVADIHFDY-RLALEAIEA--VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVN 139 (359)
T ss_dssp T-SS-EEEEESTTC-HHHHHHHHC---SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CCCCCeeeecCCCH-HHHHHHHHH--hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecc
Confidence 38899999966542 333445554 99999999998 7 44 578999999999999987653
No 273
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.68 E-value=1.7e+02 Score=28.57 Aligned_cols=141 Identities=14% Similarity=0.046 Sum_probs=80.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhc---CCcEEEEeccC-----------CchhhHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKL---GFSTLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~---Gf~~iKlKiG~-----------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s 259 (427)
.|+-.++... ++++.+.+++..+. |...|-+.++. +++.=.+.++++|+.- ++.+.|=-.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 4666666655 78887777776554 68899998872 2333344567777632 1222222222346
Q ss_pred HHHHHHHHHHhhhC--CCC-Cc-----------eE--eCCCC-CC-----------ChhhHHHHHHhhcccc--CCeEEe
Q 014285 260 SEEAVEVLGKLNDM--GVI-PV-----------LF--EQPVH-RD-----------DWSGLHDVSNFARDTY--GISVVA 309 (427)
Q Consensus 260 ~~~A~~~l~~L~~~--~l~-~~-----------~i--EqP~~-~~-----------d~~~~~~L~~~~r~~~--~iPIa~ 309 (427)
.++..+.++.+.+. ++. +. -+ +.|.- .. .+..++.+.+ +++.. .+||..
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 56656666766555 211 00 01 22211 11 1222322221 12345 499998
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
-=-+.+.+|+.+.+.+ .++.+|+=-..+
T Consensus 249 ~GGI~s~~da~e~l~a-GA~~Vqv~ta~~ 276 (294)
T cd04741 249 VGGVLDGRGAFRMRLA-GASAVQVGTALG 276 (294)
T ss_pred eCCCCCHHHHHHHHHc-CCCceeEchhhh
Confidence 8889999999999986 478888866544
No 274
>PRK12999 pyruvate carboxylase; Reviewed
Probab=60.49 E-value=68 Score=37.76 Aligned_cols=150 Identities=9% Similarity=0.125 Sum_probs=91.5
Q ss_pred HHHHHH-HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCC--cEE--E---EeCCCC-CCHHHHHHHHHHhhhCC
Q 014285 205 PAEASE-LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPH--CSF--I---LDANEG-YTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 205 ~~~~~~-~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~--~~L--~---vDAN~~-~s~~~A~~~l~~L~~~~ 274 (427)
|+...+ .++...+.|...|.+-... +++.=...++.+++.+.. +.+ . .|+... ++++...++++.+.+.|
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444433 4777778898888776654 333323345677776532 222 2 266554 89999999999999999
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC-C--HHHHHHHHHcCCCcEEEeCCCCcc-HHH---HHHHH
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR-S--LNDVQKVMQENLASVVNIKLAKFG-VLG---TLQII 347 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~-~--~~~~~~ll~~~a~~~i~lk~~~~G-i~~---~~~~~ 347 (427)
.+...|=+-.---......+|.+.+|+..++||...=+.. + ......+++.+ +|++..-.+-+| .++ +..++
T Consensus 705 a~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aG-ad~vD~av~glg~~tgn~~le~vv 783 (1146)
T PRK12999 705 AHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAG-VDIVDVAVASMSGLTSQPSLNSIV 783 (1146)
T ss_pred CCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhC-CCEEEecchhhcCCcCCHHHHHHH
Confidence 8877888887666666667776666667889997643221 1 12224455554 676544444333 332 44555
Q ss_pred HHHHHcCC
Q 014285 348 KATRKSGL 355 (427)
Q Consensus 348 ~~A~~~gi 355 (427)
...+..|.
T Consensus 784 ~~L~~~~~ 791 (1146)
T PRK12999 784 AALEGTER 791 (1146)
T ss_pred HHHHhcCC
Confidence 55554444
No 275
>PRK12928 lipoyl synthase; Provisional
Probab=60.35 E-value=1.8e+02 Score=28.58 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccC--C-c----hhhHHHHHHHHHhCCCcEEEE-eC--CCCCCHHHHHHHHHHh--
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGR--N-I----TADFDVLQAIHAVHPHCSFIL-DA--NEGYTSEEAVEVLGKL-- 270 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~--~-~----~~d~~~l~~ir~~~~~~~L~v-DA--N~~~s~~~A~~~l~~L-- 270 (427)
.+++++.+.++.+.+.|.+-+-+--|. | + +.=.+.+++|++..|++.+.+ ++ .+. ..++++.+..-
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~--~~e~L~~l~~Ag~ 164 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGG--QRERLATVLAAKP 164 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccC--CHHHHHHHHHcCc
Confidence 378888889998888999887775542 2 1 123567888888888877664 22 221 23333333321
Q ss_pred hhCCCCCceEeCCC--------CCCChhhHHHHHHhhcc-------ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe--
Q 014285 271 NDMGVIPVLFEQPV--------HRDDWSGLHDVSNFARD-------TYGISVVADESCRSLNDVQKVMQENLASVVNI-- 333 (427)
Q Consensus 271 ~~~~l~~~~iEqP~--------~~~d~~~~~~L~~~~r~-------~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l-- 333 (427)
+-++. .+| +. +..+++...++.+.+++ .+++=+..+|+.-...+..+.+....++++.+
T Consensus 165 ~i~~h---nlE-t~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 165 DVFNH---NLE-TVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred hhhcc---cCc-CcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 11221 233 22 11233333332222221 23444445566555555555666666766664
Q ss_pred --CCCC----c-c---HHHHHHHHHHHHHcCCcEEEccc
Q 014285 334 --KLAK----F-G---VLGTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 334 --k~~~----~-G---i~~~~~~~~~A~~~gi~~~~~s~ 362 (427)
.|++ + . ..+..++.+.|.+.|...+.++.
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGP 279 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecC
Confidence 2222 1 2 23456777888888887776654
No 276
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=60.35 E-value=63 Score=32.26 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=45.3
Q ss_pred CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 304 GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 304 ~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
.+||++.= ...+.+.+++.++.+ ++.|.+|.|..= +..+++++++|+++|+.+-
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 68988764 556788889999986 899999999873 7789999999999999874
No 277
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=60.16 E-value=1.6e+02 Score=29.22 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC-chhh-HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN-ITAD-FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~-~~~d-~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (427)
+.+++...++++.+.|.+.|.+--|-+ +..| .+.++.+++.+.-..+.+..||..-. +.++.|.+.++. ++-
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~----~~~~~L~~aGl~--~v~ 119 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA----RFAAELADAGLK--RLN 119 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHH----HHHHHHHHcCCC--eEE
Confidence 677777777777788988887765632 2333 34566666643212688999987643 345666666553 333
Q ss_pred CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHH----HHHHHcCCCcEEEeCCCCc-c--HHHHHHHHHHHHHcC
Q 014285 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV----QKVMQENLASVVNIKLAKF-G--VLGTLQIIKATRKSG 354 (427)
Q Consensus 282 qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~----~~ll~~~a~~~i~lk~~~~-G--i~~~~~~~~~A~~~g 354 (427)
=-+..-+-+.+.+++. .+ +.+.+ +.+.+.+ ..-+.+....+ | ..+..+++++|++.|
T Consensus 120 ISlDs~~~e~~~~i~~-----~g----------~~~~vl~~i~~~~~~G-i~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 120 ISLDTLRPELFAALTR-----NG----------RLERVIAGIDAAKAAG-FERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred EEeccCCHHHhhhhcC-----CC----------CHHHHHHHHHHHHHcC-CCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 3333333344555431 11 12222 3333332 21122221111 4 567788889999999
Q ss_pred CcEEE
Q 014285 355 LHLMI 359 (427)
Q Consensus 355 i~~~~ 359 (427)
+.+..
T Consensus 184 i~~~~ 188 (329)
T PRK13361 184 LDIAF 188 (329)
T ss_pred CeEEE
Confidence 87753
No 278
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=60.12 E-value=1.7e+02 Score=30.15 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=82.7
Q ss_pred eeeeeecCC-CHHHHHHHHHHHhhcCCcEEEEeccC-C----------chhh----HHHHHHHHHhCCCcEEEEeCCCCC
Q 014285 195 STAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-N----------ITAD----FDVLQAIHAVHPHCSFILDANEGY 258 (427)
Q Consensus 195 p~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKiG~-~----------~~~d----~~~l~~ir~~~~~~~L~vDAN~~~ 258 (427)
|+..++... +++++.+.++.+.+.|+..|-+.++- . +.+| .+.++++++.. ++.+.|=-.-
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-- 177 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-- 177 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC--
Confidence 444555554 67777777777777788888887762 1 1123 33455555532 2233322222
Q ss_pred CHHHHHHHHHHhhhCCCCCc------------eEe----CC-CCC--------------CChhhHHHHHHhhcccc---C
Q 014285 259 TSEEAVEVLGKLNDMGVIPV------------LFE----QP-VHR--------------DDWSGLHDVSNFARDTY---G 304 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~------------~iE----qP-~~~--------------~d~~~~~~L~~~~r~~~---~ 304 (427)
+.++..++++.+++.+..-. .+| .| ++. -.|+..+++.+ .. +
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~----~~~~~~ 253 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIAR----DPETRG 253 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHh----ccccCC
Confidence 22234456666665543200 122 13 111 12444455543 34 7
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc--cH---HH-HHHHHHHHHHcCC
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKF--GV---LG-TLQIIKATRKSGL 355 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~--Gi---~~-~~~~~~~A~~~gi 355 (427)
+||..-=-+.+..|+.+.+.++ ++.||+=-..+ |. .. ..++.++.+++|+
T Consensus 254 ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999888899999999999865 67777654432 42 22 2233355566664
No 279
>PRK08508 biotin synthase; Provisional
Probab=59.69 E-value=1.2e+02 Score=29.47 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEcc---cCchhH
Q 014285 340 VLGTLQIIKATRKSGLHLMIDG---MIETRL 367 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s---~~es~i 367 (427)
..+.++.++.|++.|+++.-+. ..|+.-
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~e 166 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCSGGIFGLGESWE 166 (279)
T ss_pred HHHHHHHHHHHHHcCCeecceeEEecCCCHH
Confidence 6777888888999999884333 345543
No 280
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=59.12 E-value=1.1e+02 Score=29.60 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=52.1
Q ss_pred eeeeecCCCHHHHHHHHHHHhhcCCcEEEEecc----------------------CCchhhHHHHHHHHHhCCC--cEEE
Q 014285 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVG----------------------RNITADFDVLQAIHAVHPH--CSFI 251 (427)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG----------------------~~~~~d~~~l~~ir~~~~~--~~L~ 251 (427)
.|.+.+.-+.+...+.++.+.+.|-..+-+-+- .++++-++.++.+|+..++ +-||
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 355555556677777777777777777776652 1233446677788854444 4455
Q ss_pred EeCCCC------------------------CCHHHHHHHHHHhhhCCCCCceEeCCCC
Q 014285 252 LDANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (427)
Q Consensus 252 vDAN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqP~~ 285 (427)
--.|-- +..+++.++.+.++++++.+.++=.|..
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t 151 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTT 151 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 555521 1346666677777777776666667743
No 281
>PRK15108 biotin synthase; Provisional
Probab=58.82 E-value=1.3e+02 Score=30.26 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhhhCCCCCceE----eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLF----EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~i----EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
+++|..+.++...+.|++-..+ +.|.. .+++.+.++.+.++ +.++.+..-=...+...++++-+.+ +|.++++
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~-~~~e~i~~~i~~ik-~~~i~v~~s~G~ls~e~l~~LkeAG-ld~~n~~ 153 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVK-AMGLETCMTLGTLSESQAQRLANAG-LDYYNHN 153 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCc-chHHHHHHHHHHHH-hCCCEEEEeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 5566566555555443321111 23321 12444444443333 2344443322234455555555543 5544431
Q ss_pred ----------CCCcc-HHHHHHHHHHHHHcCCcEEEccc
Q 014285 335 ----------LAKFG-VLGTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 335 ----------~~~~G-i~~~~~~~~~A~~~gi~~~~~s~ 362 (427)
....+ +...++.++.|++.|+.+..|..
T Consensus 154 leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i 192 (345)
T PRK15108 154 LDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGI 192 (345)
T ss_pred cccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEE
Confidence 11123 77899999999999998876643
No 282
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=58.50 E-value=99 Score=31.52 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCc----hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~----~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
.++++..+++++..+.|.+-+=+--|.++ +-..+.++.|++.+|++.+. +||+.+ +.++.......
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~-----a~s~~e-i~~~~~~~~~s---- 159 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIH-----ALSAGE-ILFLAREGGLS---- 159 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhc-----ccCHHH-hHHHHhccCCC----
Confidence 37899999999999999999999999643 34466788899888876443 466554 23333222211
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEE
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~ 358 (427)
--+.|++|... .--.+|...-|-+. +..++.+ . |.+.-....+++.+.|.+.||+..
T Consensus 160 ---------~~E~l~~Lk~a--Gldsmpg~~aeil~--e~vr~~~---------~-p~K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 160 ---------YEEVLKRLKEA--GLDSMPGGGAEILS--EEVRKIH---------C-PPKKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred ---------HHHHHHHHHHc--CCCcCcCcceeech--HHHHHhh---------C-CCCCCHHHHHHHHHHHHHcCCCcc
Confidence 12336777531 11235555444322 2333332 2 445557789999999999999976
Q ss_pred Eccc
Q 014285 359 IDGM 362 (427)
Q Consensus 359 ~~s~ 362 (427)
-+-+
T Consensus 217 atml 220 (370)
T COG1060 217 ATML 220 (370)
T ss_pred ceeE
Confidence 5443
No 283
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=58.38 E-value=1.9e+02 Score=28.28 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=75.6
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh--CCCcEEEEeC------------CC--CCCHHHHHHHHHHh-hh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV--HPHCSFILDA------------NE--GYTSEEAVEVLGKL-ND 272 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~--~~~~~L~vDA------------N~--~~s~~~A~~~l~~L-~~ 272 (427)
.+++.++.||+.+.+.--. +.++.++..+.+++. .-++.+-.|. .+ .-+++||.++.+.. .+
T Consensus 89 ~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~D 168 (281)
T PRK06806 89 KIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVD 168 (281)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCC
Confidence 4555678999999999753 667777777777763 1222222221 12 23799999998652 11
Q ss_pred C-----C-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe-cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 273 M-----G-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 273 ~-----~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~-dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
| | +|..+ . .-+.-+++.++++++ .+++|+.+ |=|=++.++++++++.+ ++-+++--...
T Consensus 169 yLAvaiG~~hg~~-~-~~~~l~~~~L~~i~~----~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~T~i~ 234 (281)
T PRK06806 169 ALAVAIGNAHGMY-N-GDPNLRFDRLQEIND----VVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVATATF 234 (281)
T ss_pred EEEEccCCCCCCC-C-CCCccCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEhHHHH
Confidence 1 1 22112 1 113347888999986 57888854 55777889999999887 55666655444
No 284
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=58.06 E-value=1.9e+02 Score=28.36 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=77.2
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh--CCC--cEEEEeCC----------CCC-CHHHHHHHHHHhhhC-
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV--HPH--CSFILDAN----------EGY-TSEEAVEVLGKLNDM- 273 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~--~~~--~~L~vDAN----------~~~-s~~~A~~~l~~L~~~- 273 (427)
.+++.++.||+.+-+.-.. ++++.++..+.+++. ..+ ++.-+..- ..| +++||.++.+.=.++
T Consensus 91 ~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~L 170 (293)
T PRK07315 91 DALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFL 170 (293)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEE
Confidence 4456678999999999764 678888888888772 112 12111111 124 699999998542221
Q ss_pred CCC--Cc--eEeCCCCCCChhhHHHHHHhhcccc-CCeEEe-cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 274 GVI--PV--LFEQPVHRDDWSGLHDVSNFARDTY-GISVVA-DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 274 ~l~--~~--~iEqP~~~~d~~~~~~L~~~~r~~~-~iPIa~-dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+. .. .+-.+.+.-+++.++++++ .+ ++|+.+ |=|=++.++++++++.+ +.-|++.-...
T Consensus 171 Av~iG~vHG~y~t~~k~l~~e~L~~i~~----~~~~iPlVlhGGSGi~~e~~~~~i~~G-i~KiNv~T~i~ 236 (293)
T PRK07315 171 AAGIGNIHGPYPENWEGLDLDHLEKLTE----AVPGFPIVLHGGSGIPDDQIQEAIKLG-VAKVNVNTECQ 236 (293)
T ss_pred eeccccccccCCCCCCcCCHHHHHHHHH----hccCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEccHHH
Confidence 110 11 0233334567888999886 45 488754 45777888999999887 66677765443
No 285
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.02 E-value=1.2e+02 Score=30.59 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeC--CCCC-------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PVHR-------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--P~~~-------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
.|+.++=+++++.|.+.|++ .||- |..+ ++-+.++.+.+. ....++.. +.+..+++++++.+
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~--~IEvGs~vspk~vPqmad~~ev~~~i~~~--~~~~~~~l----~~n~~die~A~~~g- 134 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLP--VVEATSFVSPKWVPQLADAKDVMAAVRNL--EGARFPVL----TPNLKGFEAAIAAG- 134 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEECCCcCcccccccccHHHHHHHHHhc--cCCceeEE----cCCHHHHHHHHHcC-
Confidence 57889989999999999986 8995 3332 222334444321 12222322 35889999999886
Q ss_pred CcEEEeCCC-----------C--cc-HHHHHHHHHHHHHcCCcEE
Q 014285 328 ASVVNIKLA-----------K--FG-VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 328 ~~~i~lk~~-----------~--~G-i~~~~~~~~~A~~~gi~~~ 358 (427)
++.+.+=++ + -- +....+++++|+++|+.+.
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 555444311 1 11 3445679999999999884
No 286
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=57.98 E-value=83 Score=29.27 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCC
Q 014285 207 EASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~ 286 (427)
++.+.++++.+.|++.|-+. |...++.+|+.+|++++.+|.+-.-.-.+++++++.+ |+.-.++-.=+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~-------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~---G~~~i~ls~EL-- 70 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVS-------NPGLLELLKELGPDLKIIADYSLNVFNSESARFLKEL---GASRITLSPEL-- 70 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEc-------CHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHc---CCCEEEECccC--
Confidence 44556677777888875543 6788999999999999999999765555556666655 22211222222
Q ss_pred CChhhHHHHHH
Q 014285 287 DDWSGLHDVSN 297 (427)
Q Consensus 287 ~d~~~~~~L~~ 297 (427)
+.+.++++++
T Consensus 71 -~~~ei~~i~~ 80 (233)
T PF01136_consen 71 -SLEEIKEIAE 80 (233)
T ss_pred -CHHHHHHHHH
Confidence 4566677765
No 287
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=57.97 E-value=1.1e+02 Score=29.23 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=69.0
Q ss_pred HHHHHhhhCCCC--CceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHH
Q 014285 265 EVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLG 342 (427)
Q Consensus 265 ~~l~~L~~~~l~--~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~ 342 (427)
++++..++.|.. +..-|+-.-.++++.++++++ .+.+||-.-.-+.+..++.+.... .+|.+.+=....+-..
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~----~v~~PvL~KDFIid~~QI~ea~~~-GADavLLI~~~L~~~~ 139 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSS----ELKIPVLRKDFILDEIQIREARAF-GASAILLIVRILTPSQ 139 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHH----hcCCCEEeccccCCHHHHHHHHHc-CCCEEEeEHhhCCHHH
Confidence 344555554421 234566667888999988875 578999999999999999887774 5788877766666567
Q ss_pred HHHHHHHHHHcCCcEEEcc
Q 014285 343 TLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s 361 (427)
..+..+.|+..|+.+.+-.
T Consensus 140 l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 140 IKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHcCCceEEEE
Confidence 8899999999999987543
No 288
>PLN02591 tryptophan synthase
Probab=57.95 E-value=1.8e+02 Score=27.91 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=57.8
Q ss_pred eeeecCCCHHHHHHHHHHHhhcCCcEEEEecc----------------------CCchhhHHHHHHHHHhCC-CcEEEEe
Q 014285 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG----------------------RNITADFDVLQAIHAVHP-HCSFILD 253 (427)
Q Consensus 197 ~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG----------------------~~~~~d~~~l~~ir~~~~-~~~L~vD 253 (427)
|.+.+.-+.+...+.++.+.+.|-..+-+-+- ..+++-++.++.+|+... -+-||-=
T Consensus 7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y 86 (250)
T PLN02591 7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY 86 (250)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 44444445666666666666777777666552 122344566666664311 2346777
Q ss_pred CCCC------------------------CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 254 ANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 254 AN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
.|-- +.++|+.++.+.++++++.+.++=.|-.++ +.++++++
T Consensus 87 ~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~--~ri~~ia~ 152 (250)
T PLN02591 87 YNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT--ERMKAIAE 152 (250)
T ss_pred ccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHH
Confidence 6621 356888888888888888765666666532 33444443
No 289
>PLN02389 biotin synthase
Probab=57.47 E-value=1.4e+02 Score=30.47 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEcccC---chhHHHHHHHHHHhhc
Q 014285 340 VLGTLQIIKATRKSGLHLMIDGMI---ETRLATGFALHLAAGL 379 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s~~---es~ig~~a~~hlaaal 379 (427)
..+.++.++.|++.|+++..|..+ |+.--....++...-+
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L 254 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATL 254 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhc
Confidence 778899999999999998776433 5543333444444333
No 290
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=57.25 E-value=86 Score=31.66 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=43.9
Q ss_pred ccCCeEEecC-CCCC--HHHHHHHHHcC----------CCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRS--LNDVQKVMQEN----------LASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~--~~~~~~ll~~~----------a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+ ...++++++.+ .++.|.+|-|..= +.-+++++++|+++|+.+-
T Consensus 90 ~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 90 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 6789998874 3345 45566677654 3888999999873 6779999999999999884
No 291
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=57.08 E-value=2e+02 Score=28.11 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecc--C----CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVG--R----NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG--~----~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+++.|.+.+=+--. - +.++=.+.++.+.+ ...++.+.+=.. + +.++|++.++..++.|..
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-cHHHHHHHHHHHHHhCCC
Confidence 6777888999999999998775432 1 23333445566666 455677777665 3 689999999999988865
Q ss_pred CceEeCCCC--CCC---hhhHHHHHHhhccccCCeEEecCC---CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADES---CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 277 ~~~iEqP~~--~~d---~~~~~~L~~~~r~~~~iPIa~dE~---~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
-..+=-|.- ..+ .+-++++++ .+++||.+=.. -.+++.+.++.+. .+.++-+|-+ .| +....+++
T Consensus 102 av~~~pP~y~~~s~~~i~~~f~~v~~----a~~~pvilYn~~g~~l~~~~~~~La~~-~~nvvgiKds-~~d~~~~~~~~ 175 (296)
T TIGR03249 102 GYLLLPPYLINGEQEGLYAHVEAVCE----STDLGVIVYQRDNAVLNADTLERLADR-CPNLVGFKDG-IGDMEQMIEIT 175 (296)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHhh-CCCEEEEEeC-CCCHHHHHHHH
Confidence 335555543 111 223455554 57889875431 2355566777642 3688889986 36 77777665
Q ss_pred HHHHHcCCcEEEc
Q 014285 348 KATRKSGLHLMID 360 (427)
Q Consensus 348 ~~A~~~gi~~~~~ 360 (427)
+... .++.+..+
T Consensus 176 ~~~~-~~~~v~~G 187 (296)
T TIGR03249 176 QRLG-DRLGYLGG 187 (296)
T ss_pred HHcC-CCeEEEeC
Confidence 4332 24555444
No 292
>PRK00915 2-isopropylmalate synthase; Validated
Probab=56.89 E-value=1.1e+02 Score=32.49 Aligned_cols=121 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHhhhCCCCCceEeC--CC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHH--
Q 014285 253 DANEG----YTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM-- 323 (427)
Q Consensus 253 DAN~~----~s~~~A~~~l~~L~~~~l~~~~iEq--P~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll-- 323 (427)
|.+|+ |+.++-+++++.|.+.|++ .||= |. .+.|++.++++.+ ...+..|+.==. ....+++..+
T Consensus 14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~s~~d~~~v~~i~~---~~~~~~i~a~~r-~~~~did~a~~a 87 (513)
T PRK00915 14 DGEQSPGASLTVEEKLQIAKQLERLGVD--VIEAGFPASSPGDFEAVKRIAR---TVKNSTVCGLAR-AVKKDIDAAAEA 87 (513)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCCCChHHHHHHHHHHh---hCCCCEEEEEcc-CCHHHHHHHHHH
Q ss_pred --HcCCCcEEEeCCC------------Ccc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 324 --QENLASVVNIKLA------------KFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 324 --~~~a~~~i~lk~~------------~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
+.+...+-..-+. +-. +..+.+.+++|+++|..+..+..-.+-.-......++..+
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 88 LKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred hhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
No 293
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=56.33 E-value=56 Score=32.80 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=47.1
Q ss_pred ccCCeEEecC-CCC--CHHHHHHHHHcCC----------CcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCR--SLNDVQKVMQENL----------ASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~--~~~~~~~ll~~~a----------~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ... +...++++++.+. ++.+.+|.|..= +.-++++.++|++.|+.+-
T Consensus 83 ~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 83 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred HCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5789999875 444 6788899999874 889999999873 6779999999999999874
No 294
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=55.43 E-value=1.3e+02 Score=35.34 Aligned_cols=131 Identities=8% Similarity=0.050 Sum_probs=85.0
Q ss_pred HHHH-HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCC----cEEE---EeCCC-CCCHHHHHHHHHHhhhCC
Q 014285 205 PAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPH----CSFI---LDANE-GYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 205 ~~~~-~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~----~~L~---vDAN~-~~s~~~A~~~l~~L~~~~ 274 (427)
|+++ ...+++..+.|...|.+--.- |++.=...++++++.|.. +... +|++. .|+.+...++++.|.+.|
T Consensus 623 pd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 623 PDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 4555 556777788999998885543 343334456777776642 2333 45554 578999999999999999
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC---CHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR---SLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~---~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+...|-+-.---......+|.+.+++..++||...=+.. .......+++++ +|+ +|.+..
T Consensus 703 ad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaG-ad~--vD~ai~ 766 (1143)
T TIGR01235 703 AHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAG-VDV--VDVAVD 766 (1143)
T ss_pred CCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhC-CCE--EEecch
Confidence 8877888887666666777777766667789997643222 122234455554 666 444443
No 295
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=55.40 E-value=3.3e+02 Score=30.20 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV----HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~----~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
.|.+...+++.++.++|-..+.+-+-. .+|.+.++.|++. +-.+.|..|-+ |++.-|+..++.++...+.+=
T Consensus 107 ~D~eatv~Qi~~l~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~vdkiRINPG 182 (733)
T PLN02925 107 KDVEATVDQVMRIADKGADIVRITVQG--KKEADACFEIKNTLVQKGYNIPLVADIH--FAPSVALRVAECFDKIRVNPG 182 (733)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecC--CCHHHHHHHHHhcCCeEECCc
Confidence 356667889999999999998887743 5677778777773 55788999986 455555666665554332210
Q ss_pred eEeCC-------C-CCCCh-hhHH-------HHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HH
Q 014285 279 LFEQP-------V-HRDDW-SGLH-------DVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (427)
Q Consensus 279 ~iEqP-------~-~~~d~-~~~~-------~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~ 341 (427)
=|=.+ . ..+++ +++. .+.+.++ ..++||=.|-+.-++. .++++... + +--| +.
T Consensus 183 N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak-~~~~~iRIGvN~GSLs--~ri~~~yG------d-tp~gmVe 252 (733)
T PLN02925 183 NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCK-KYGRAMRIGTNHGSLS--DRIMSYYG------D-SPRGMVE 252 (733)
T ss_pred ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC------C-ChHHHHH
Confidence 01111 0 01111 1111 1222221 4678887777666665 34443321 1 2236 56
Q ss_pred HHHHHHHHHHHcCCcEEEcccCch--hHHHHHHHHHHhh
Q 014285 342 GTLQIIKATRKSGLHLMIDGMIET--RLATGFALHLAAG 378 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es--~ig~~a~~hlaaa 378 (427)
.+++.+++|+++|..=.+=|+=.| .+.+.+.-.|+..
T Consensus 253 SAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~ 291 (733)
T PLN02925 253 SAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAE 291 (733)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHH
Confidence 677777777777765333332222 3344444444444
No 296
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=54.86 E-value=1.6e+02 Score=26.48 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=64.8
Q ss_pred HHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC------
Q 014285 211 LASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV------ 284 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~------ 284 (427)
.++++.+.|...+-+..-...+...+.++.+++. ++.+.+|.-+..|++++++.+..-.++ ..=.|.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~-----v~~~~~~~~~~~ 141 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDI-----VILHRGIDAQAA 141 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCE-----EEEcCccccccc
Confidence 3456678898888887654333334566667764 589999988889999987644422221 111232
Q ss_pred -CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 285 -HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 285 -~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.....+.++++++ ...+||..+=-+ +.+.+.++++.+ +|++.+
T Consensus 142 ~~~~~~~~i~~~~~----~~~~~i~~~GGI-~~~~i~~~~~~G-ad~vvv 185 (202)
T cd04726 142 GGWWPEDDLKKVKK----LLGVKVAVAGGI-TPDTLPEFKKAG-ADIVIV 185 (202)
T ss_pred CCCCCHHHHHHHHh----hcCCCEEEECCc-CHHHHHHHHhcC-CCEEEE
Confidence 1223344555542 246777766554 466777777664 555544
No 297
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=54.75 E-value=60 Score=31.77 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=47.5
Q ss_pred ccCCeEEecCCC-CCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADESC-RSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE~~-~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
..++||++.-.. .+..++.+.++.+ ...+.+|.|..- +.-++++.++|++.|+.+-
T Consensus 73 ~~~vPV~lHlDHg~~~~~~~~ai~~G-FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVE 133 (286)
T COG0191 73 KYGVPVALHLDHGASFEDCKQAIRAG-FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVE 133 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHhcC-CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 577999998644 4888899999875 889999999885 6679999999999999984
No 298
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=54.03 E-value=1.2e+02 Score=29.84 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEE--------EEeC----CCCC-CHHHHHHHHHHh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF--------ILDA----NEGY-TSEEAVEVLGKL 270 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L--------~vDA----N~~~-s~~~A~~~l~~L 270 (427)
.+.+.++.||+.+-+.... ++++.++.-+.+.+. += +.+| .++. ...| +|++|.+|.++.
T Consensus 88 ~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~T 167 (287)
T PF01116_consen 88 DIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEET 167 (287)
T ss_dssp HHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHh
Confidence 3445567799999998875 688888877776652 21 1122 1111 2335 599999999765
Q ss_pred hh------CC-CCCceEeCCCCCCChhhHHHHHHhhcccc-CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeC
Q 014285 271 ND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADE-SCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 271 ~~------~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~-~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.- .| .|=.|=.---+.-|++-++++++ .+ ++|+++.= |-...++++++++.+ +.=||+.
T Consensus 168 gvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~----~~~~iPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~ 235 (287)
T PF01116_consen 168 GVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIRE----AVPDIPLVLHGGSGLPDEQIRKAIKNG-ISKINIG 235 (287)
T ss_dssp TTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHH----HHHTSEEEESSCTTS-HHHHHHHHHTT-EEEEEES
T ss_pred CCCEEEEecCccccccCCCCCcccCHHHHHHHHH----hcCCCCEEEECCCCCCHHHHHHHHHcC-ceEEEEe
Confidence 31 11 11012230023347889999986 57 99998864 666777899999875 3334443
No 299
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.02 E-value=2.1e+02 Score=27.30 Aligned_cols=146 Identities=9% Similarity=0.121 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCcEEEE-eccC---CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEeCC
Q 014285 209 SELASKYCKLGFSTLKL-NVGR---NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQP 283 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKl-KiG~---~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iEqP 283 (427)
.+.++++.++|++.+=+ .+.. .-..+.+.++.+.+. .++.+.++. |--+.+++.+++.. .+...+...-+|+|
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~ 110 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDP 110 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence 44566777889875544 2332 234567888888875 356677766 55578887777643 22221222234554
Q ss_pred CCCCChhhHHHHHHhhccccCCeEEec------------------CCCCCHHHHHHHH-HcCCCcEEEeCCCCcc-HHH-
Q 014285 284 VHRDDWSGLHDVSNFARDTYGISVVAD------------------ESCRSLNDVQKVM-QENLASVVNIKLAKFG-VLG- 342 (427)
Q Consensus 284 ~~~~d~~~~~~L~~~~r~~~~iPIa~d------------------E~~~~~~~~~~ll-~~~a~~~i~lk~~~~G-i~~- 342 (427)
+-+.++.+... ...+++++| .+-..+.++.+.+ +.+.-.++..+..+.| .++
T Consensus 111 ------~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~ 183 (258)
T PRK01033 111 ------DLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY 183 (258)
T ss_pred ------HHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC
Confidence 34455554221 123666666 1233455665545 4444445556777666 332
Q ss_pred -HHHHHHHHHHcCCcEEEcccC
Q 014285 343 -TLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 343 -~~~~~~~A~~~gi~~~~~s~~ 363 (427)
...+.++++..++++..++-.
T Consensus 184 d~~~i~~~~~~~~ipvIasGGv 205 (258)
T PRK01033 184 DLELLKSFRNALKIPLIALGGA 205 (258)
T ss_pred CHHHHHHHHhhCCCCEEEeCCC
Confidence 334456677789999887754
No 300
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=52.06 E-value=1.8e+02 Score=28.11 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHhh-cCCcEEEEeccCCchhhHHHHHHHHHhCCCcE---------EEEeCCCCC-----C---HHHHH
Q 014285 203 VSPAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIHAVHPHCS---------FILDANEGY-----T---SEEAV 264 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~-~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~---------L~vDAN~~~-----s---~~~A~ 264 (427)
.++++..+.+.++++ .|-..+|+--| .+-.++++++.+.+=.+. .+.| ++| + .++++
T Consensus 89 ~~~e~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~--ggy~~qgrt~~~a~~~i 163 (263)
T TIGR00222 89 ATPEQALKNAARVMQETGANAVKLEGG---EWLVETVQMLTERGVPVVGHLGLTPQSVNIL--GGYKVQGKDEEAAKKLL 163 (263)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCCCCEEEecCCCceeEeec--CCeeecCCCHHHHHHHH
Confidence 357777777777666 89999999976 334567777777542121 3333 434 3 34667
Q ss_pred HHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
+.++++++.|....++|-.- -+..+++++ +.++|+.
T Consensus 164 ~~A~a~e~AGA~~ivlE~vp----~~~a~~It~----~l~iP~i 199 (263)
T TIGR00222 164 EDALALEEAGAQLLVLECVP----VELAAKITE----ALAIPVI 199 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCc----HHHHHHHHH----hCCCCEE
Confidence 77788888886533555443 255677776 6788875
No 301
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=52.05 E-value=1.8e+02 Score=28.78 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC--Cc-----hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR--NI-----TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMG 274 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~--~~-----~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~ 274 (427)
++++..+.++.+.+.|++.+-+--+. |. +.=.+.+++|++..|++.+.+=...-....++++.+... +-++
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~ 171 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYN 171 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhc
Confidence 67888888999989999988665431 22 122567788888778877776432111123344444332 1122
Q ss_pred CCCceEeCC----CCCCChhhHHHHHHhhcc-------ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe----CCCCcc
Q 014285 275 VIPVLFEQP----VHRDDWSGLHDVSNFARD-------TYGISVVADESCRSLNDVQKVMQENLASVVNI----KLAKFG 339 (427)
Q Consensus 275 l~~~~iEqP----~~~~d~~~~~~L~~~~r~-------~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l----k~~~~G 339 (427)
..++-.+.- -+..+++..-++.+.+++ .+++=+.+||+.....+..+.+....++++.+ -|++-.
T Consensus 172 hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~ 251 (302)
T TIGR00510 172 HNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRH 251 (302)
T ss_pred ccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCC
Confidence 110111111 123344433232222222 35666677887776666666666666665542 332221
Q ss_pred --------HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 340 --------VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 340 --------i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
..+...+.++|.+.|...+.++.+
T Consensus 252 ~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 252 LPVKRYVSPEEFDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred CccccCCCHHHHHHHHHHHHHcCChheEeccc
Confidence 234667888899999988777644
No 302
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=51.97 E-value=73 Score=30.68 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHhhhCCCC--CceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 258 YTSEEAVEVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~--~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+++.+ +++..++.|.. +..-|+..-.+.++.+..+++ .+++||---.-+.+..++.+.-..+ +|.|.+=.
T Consensus 68 ~d~~~---~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~----~~~~PvL~KDFIid~~QI~eA~~~G-ADaVLLI~ 139 (254)
T PF00218_consen 68 FDPAE---IAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRK----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIA 139 (254)
T ss_dssp -SHHH---HHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHH----HSSS-EEEES---SHHHHHHHHHTT--SEEEEEG
T ss_pred CCHHH---HHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHH----HhCCCcccccCCCCHHHHHHHHHcC-CCEeehhH
Confidence 45544 45555554421 235677777888888888875 6889999999999999998877665 78888877
Q ss_pred CCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 336 AKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
...+-....++++.|+..|+.+.+--
T Consensus 140 ~~L~~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 140 AILSDDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp GGSGHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HhCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 77776667899999999999987543
No 303
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=51.88 E-value=2.7e+02 Score=28.10 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCcEEEEeC----CCCCCHHHHHHHHHHhhhCC--CCCceE-e--CCCCCCChhhHHHHHHhhccccCC
Q 014285 235 FDVLQAIHAVHPHCSFILDA----NEGYTSEEAVEVLGKLNDMG--VIPVLF-E--QPVHRDDWSGLHDVSNFARDTYGI 305 (427)
Q Consensus 235 ~~~l~~ir~~~~~~~L~vDA----N~~~s~~~A~~~l~~L~~~~--l~~~~i-E--qP~~~~d~~~~~~L~~~~r~~~~i 305 (427)
.+.++.+|+..|+..+.+-- -..|+++++.+.++.+.... +|+-.. | +|-...+++.+-+.-+.+++.+++
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~v 187 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPV 187 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCC
Confidence 34677788877766554432 23788999888888776432 221011 2 343344564332222223346789
Q ss_pred eEEecCC--CCCHHHHHHHHHcCCCcEEEeC
Q 014285 306 SVVADES--CRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 306 PIa~dE~--~~~~~~~~~ll~~~a~~~i~lk 334 (427)
||..=|. -.+.++.+.+.+. .+|+|.+.
T Consensus 188 PVivK~~g~g~s~~~a~~l~~~-Gvd~I~Vs 217 (352)
T PRK05437 188 PVIVKEVGFGISKETAKRLADA-GVKAIDVA 217 (352)
T ss_pred CEEEEeCCCCCcHHHHHHHHHc-CCCEEEEC
Confidence 9997654 2456667766665 58888873
No 304
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=51.71 E-value=3.3e+02 Score=29.04 Aligned_cols=140 Identities=15% Similarity=0.104 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccCC-ch--hhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeC
Q 014285 206 AEASELASKYCKLGFSTLKLNVGRN-IT--ADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~~-~~--~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (427)
++..++++++.++|-..|-+-.+.. .+ .=...++.+++.. ++.+.||. ++++.+.+-++. |.. +|=.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~pISIDT---~~~~v~eaAL~a----GAd--iINs 234 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSPVIADT---PTLDELYEALKA----GAS--GVIM 234 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCcEEEeC---CCHHHHHHHHHc----CCC--EEEE
Confidence 6678889999999999988776632 22 1223345555443 68899995 556665555554 221 1221
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEe-c-CCCCCHHHH----HHHHHcCCCcEEEeCCCCc----cHHHHHHHHHHH-H
Q 014285 283 PVHRDDWSGLHDVSNFARDTYGISVVA-D-ESCRSLNDV----QKVMQENLASVVNIKLAKF----GVLGTLQIIKAT-R 351 (427)
Q Consensus 283 P~~~~d~~~~~~L~~~~r~~~~iPIa~-d-E~~~~~~~~----~~ll~~~a~~~i~lk~~~~----Gi~~~~~~~~~A-~ 351 (427)
+..++.+.+..+++ ..+.|+.+ - +.......+ ..+.+.+ ++=|.+||..- |+...++-.+.. +
T Consensus 235 -Vs~~~~d~~~~l~a----~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~G-i~~IIlDPglg~~~~~l~~sL~~l~~~r~ 308 (499)
T TIGR00284 235 -PDVENAVELASEKK----LPEDAFVVVPGNQPTNYEELAKAVKKLRTSG-YSKVAADPSLSPPLLGLLESIIRFRRASR 308 (499)
T ss_pred -CCccchhHHHHHHH----HcCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CCcEEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 12245566766665 45555543 1 111111222 3344433 44588999762 133333333332 3
Q ss_pred HcCCcEEEcc
Q 014285 352 KSGLHLMIDG 361 (427)
Q Consensus 352 ~~gi~~~~~s 361 (427)
.+|.++.++-
T Consensus 309 ~~~~Pil~Gv 318 (499)
T TIGR00284 309 LLNVPLVFGA 318 (499)
T ss_pred hcCCcEEEee
Confidence 5788887664
No 305
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=51.66 E-value=2e+02 Score=29.06 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=71.5
Q ss_pred HHHHhhcCCcEEEEeccC--------CchhhHHHHHHHHHh----CC--CcEEEE------------eC---------CC
Q 014285 212 ASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HP--HCSFIL------------DA---------NE 256 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~~ir~~----~~--~~~L~v------------DA---------N~ 256 (427)
+.+.++.||+.+-+.-.. ++++.+++-+.+.+. += +.+|-. |- ..
T Consensus 89 i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~ 168 (347)
T TIGR01521 89 CQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQ 168 (347)
T ss_pred HHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhh
Confidence 445578999999998774 678888888777662 21 223321 21 12
Q ss_pred CC-CHHHHHHHHHHhh-----h-CC-CCCceEe--CCC-CCCChhhHHHHHHhhcccc-CCeEEecC-CCCC--------
Q 014285 257 GY-TSEEAVEVLGKLN-----D-MG-VIPVLFE--QPV-HRDDWSGLHDVSNFARDTY-GISVVADE-SCRS-------- 315 (427)
Q Consensus 257 ~~-s~~~A~~~l~~L~-----~-~~-l~~~~iE--qP~-~~~d~~~~~~L~~~~r~~~-~iPIa~dE-~~~~-------- 315 (427)
.| +|++|.+|+++.. - .| .|=.|-. +|- +.-|++-++++.+ .+ ++|+.+.= |-..
T Consensus 169 ~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~----~v~~vPLVLHGgSG~p~~~~~~~~ 244 (347)
T TIGR01521 169 LLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHA----RLPDTHLVMHGSSSVPQEWLDIIN 244 (347)
T ss_pred cCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHc----cCCCCCEEEeCCCCCchHhhHHHH
Confidence 26 5999999998632 1 11 1212443 352 1246888888875 56 69998764 3222
Q ss_pred -------------HHHHHHHHHcCCCcEEEeCC
Q 014285 316 -------------LNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 316 -------------~~~~~~ll~~~a~~~i~lk~ 335 (427)
.++++++++.+ +.=||+..
T Consensus 245 ~~~~~~~~~~g~p~e~i~~ai~~G-I~KVNi~T 276 (347)
T TIGR01521 245 EYGGEIKETYGVPVEEIVEGIKYG-VRKVNIDT 276 (347)
T ss_pred hhcccccccCCCCHHHHHHHHHCC-CeeEEeCh
Confidence 45677777765 33455554
No 306
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=51.08 E-value=96 Score=28.40 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=44.3
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-H-------HHHHHHHHHHHHcCCcEEEcccCchh
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V-------LGTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i-------~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
+.|+.|++|.--.+...+..+.. ..+|+|-+|.+.+- + .-...++.+|+..|+.++..+ +|+.
T Consensus 144 ~~G~~ialddfg~~~~~~~~l~~-l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g-Ve~~ 214 (241)
T smart00052 144 ELGVRIALDDFGTGYSSLSYLKR-LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG-VETP 214 (241)
T ss_pred HCCCEEEEeCCCCcHHHHHHHHh-CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec-CCCH
Confidence 36778888875555555554443 46999999987653 3 235567899999999999876 4664
No 307
>PRK15063 isocitrate lyase; Provisional
Probab=50.99 E-value=3.1e+02 Score=28.55 Aligned_cols=103 Identities=13% Similarity=-0.019 Sum_probs=70.1
Q ss_pred eeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEe--------cc-------CCchhhHHHHHHHHHh----CCCcE--E
Q 014285 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLN--------VG-------RNITADFDVLQAIHAV----HPHCS--F 250 (427)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlK--------iG-------~~~~~d~~~l~~ir~~----~~~~~--L 250 (427)
+|+.+-+ +.+.+..+.+.++.+.+.|-..|-|- .| .+.++-+++|+++|.. +.+.- -
T Consensus 147 ~PIiADaDtGfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiA 226 (428)
T PRK15063 147 APIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIA 226 (428)
T ss_pred CCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5554432 33455567777888889998877763 23 1456678889988863 33332 3
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 251 ILDANEG----------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 251 ~vDAN~~----------------------------~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
|-|+..+ -..++|++.+.+..+ +-...|+|-..+ +.+.++++++.+
T Consensus 227 RTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~--d~ee~~~fa~~v 300 (428)
T PRK15063 227 RTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTP--DLEEARRFAEAI 300 (428)
T ss_pred ECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCC--CHHHHHHHHHhh
Confidence 6699654 257899999999988 545579997554 678888888743
No 308
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=50.85 E-value=2.7e+02 Score=27.76 Aligned_cols=60 Identities=20% Similarity=0.369 Sum_probs=39.7
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeC--C-----CC----cc---HHHHHHHHHHHHHcCCcEEEcccCchh
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIK--L-----AK----FG---VLGTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk--~-----~~----~G---i~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
+||..+ .+.+..+.+.+++.+ +|+|.+- + ++ .| ++...++.+.+++.+++++..+-+.++
T Consensus 136 v~Vi~G-~v~t~~~A~~l~~aG-aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~ 209 (325)
T cd00381 136 VDVIAG-NVVTAEAARDLIDAG-ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTS 209 (325)
T ss_pred ceEEEC-CCCCHHHHHHHHhcC-CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCH
Confidence 788764 457888888888765 7887752 1 11 12 344566777778889999886655443
No 309
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=50.76 E-value=1.5e+02 Score=30.04 Aligned_cols=20 Identities=20% Similarity=-0.014 Sum_probs=9.9
Q ss_pred EeCCCCCCHHHHHHHHHHhh
Q 014285 252 LDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~ 271 (427)
.|..|..+|.+..++++.+.
T Consensus 217 ~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 217 GDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred cCCcCCcCHHHHHHHHHHHH
Confidence 45555555555544444443
No 310
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.71 E-value=2.6e+02 Score=28.36 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=71.3
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEE---ec--cC----Cc-hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKL---NV--GR----NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKl---Ki--G~----~~-~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (427)
+.+.+.+.+.+.|+.+.+.|.+.++- |- .+ .+ ++-++.++++++.. ++.+.-+....-+.+. +..
T Consensus 109 CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~-Gl~~~tev~d~~~v~~----~~~ 183 (352)
T PRK13396 109 CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT-GLGIITEVMDAADLEK----IAE 183 (352)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc-CCcEEEeeCCHHHHHH----HHh
Confidence 44578888999999998888776551 10 00 11 33444555544421 2444444433322222 222
Q ss_pred hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC-CHHHHHH----HHHcCCCcEEEeCCCC---c-c-
Q 014285 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR-SLNDVQK----VMQENLASVVNIKLAK---F-G- 339 (427)
Q Consensus 270 L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~-~~~~~~~----ll~~~a~~~i~lk~~~---~-G- 339 (427)
+.+ + .+|=--. -.|++-+.+++ +++.||.+---.. +.+++.. +.+.+..+++...-.. . +
T Consensus 184 ~~d--~--lqIga~~-~~n~~LL~~va-----~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y 253 (352)
T PRK13396 184 VAD--V--IQVGARN-MQNFSLLKKVG-----AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQY 253 (352)
T ss_pred hCC--e--EEECccc-ccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCC
Confidence 211 1 1211100 12344445554 5788888877666 7777643 3344555666665411 1 2
Q ss_pred --H-HHHHHHHHHHHHcCCcEEEc
Q 014285 340 --V-LGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 340 --i-~~~~~~~~~A~~~gi~~~~~ 360 (427)
. .....+..+-+..++++++.
T Consensus 254 ~~~~~dl~ai~~lk~~~~lPVi~D 277 (352)
T PRK13396 254 TRNTLDLSVIPVLRSLTHLPIMID 277 (352)
T ss_pred CCCCcCHHHHHHHHHhhCCCEEEC
Confidence 1 12333344444458888653
No 311
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=50.69 E-value=1e+02 Score=29.49 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=50.3
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH-------HHHHHHHHHHcCCcEEEcccCchh
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG-------TLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~-------~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
..|+.||+|.-=.+...+..+-+ -.+|++-+|.+.+. +.. ...++++|++.|+.++.-+ +|+.
T Consensus 147 ~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG-VEt~ 217 (256)
T COG2200 147 ELGVRIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG-VETE 217 (256)
T ss_pred HCCCeEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee-cCCH
Confidence 57899999998888888766554 57999999998875 432 5678999999999999876 4664
No 312
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=50.67 E-value=3.3e+02 Score=28.78 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=62.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccc-cCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~-~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
+++|++--+.. ++..+.++.|-+.++.. -+=+.-+ ..-....++-+.+++. .++||..| .+.+.+..+++++.+
T Consensus 213 rl~Vgaav~~~-~~~~~ra~~Lv~aGVd~-i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g-~~~t~~~~~~l~~~G- 287 (475)
T TIGR01303 213 RLRIGAAVGIN-GDVGGKAKALLDAGVDV-LVIDTAH-GHQVKMISAIKAVRALDLGVPIVAG-NVVSAEGVRDLLEAG- 287 (475)
T ss_pred CceehheeeeC-ccHHHHHHHHHHhCCCE-EEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEe-ccCCHHHHHHHHHhC-
Confidence 44454444333 23345666665555432 1112222 2223333332333323 36898886 567888899999876
Q ss_pred CcEEEe-----------CCCCcc---HHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 328 ASVVNI-----------KLAKFG---VLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 328 ~~~i~l-----------k~~~~G---i~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
+|+|.+ ..+-+| ++..++.++.|+++|++++-.+-+-+
T Consensus 288 ~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~ 339 (475)
T TIGR01303 288 ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRH 339 (475)
T ss_pred CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCC
Confidence 677651 122234 45667888888999999988775543
No 313
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=50.43 E-value=3e+02 Score=28.23 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=49.8
Q ss_pred CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC---Cc--cHHHHHHHHHHHHHc--CCcEEE
Q 014285 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA---KF--GVLGTLQIIKATRKS--GLHLMI 359 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~---~~--Gi~~~~~~~~~A~~~--gi~~~~ 359 (427)
-+|+.+++|++ .+++||..-+- .+.++.+.+++.+ +|+|.+.-. .. |+....-+.+++++. .++++.
T Consensus 240 ~tW~~i~~lr~----~~~~pvivKgV-~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 240 LTWEDLAFLRE----WTDLPIVLKGI-LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred CCHHHHHHHHH----hcCCCEEEecC-CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 36888998876 67899999855 7889999999875 888776532 01 122233334444433 488988
Q ss_pred cccCchhH
Q 014285 360 DGMIETRL 367 (427)
Q Consensus 360 ~s~~es~i 367 (427)
.+-+-++.
T Consensus 314 dGGIr~G~ 321 (383)
T cd03332 314 DSGVRTGA 321 (383)
T ss_pred eCCcCcHH
Confidence 87665543
No 314
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.75 E-value=3.4e+02 Score=28.69 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCeEEecCCCCCHHHHHHHHHcCCCcEEEeC--C---------CCcc---HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 304 GISVVADESCRSLNDVQKVMQENLASVVNIK--L---------AKFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 304 ~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk--~---------~~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
+++|.+| .+.+.+..+.+++.+ +|+|-+- + +-+| ++...++++.|+++|++++-.+-+
T Consensus 268 ~~~v~ag-nv~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi 339 (479)
T PRK07807 268 GVPIVAG-NVVTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV 339 (479)
T ss_pred CCeEEee-ccCCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC
Confidence 4777776 466888889999876 7876511 2 2223 556677788888999999876654
No 315
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=49.62 E-value=2.3e+02 Score=30.92 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=14.8
Q ss_pred hCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 244 VHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 244 ~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
.|.+.--..|.+|..+|.++.+++++|.+
T Consensus 167 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 167 MGVDSLCIKDMAGLLKPYAAYELVSRIKK 195 (593)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 34444444455555555555555555543
No 316
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=49.55 E-value=1.5e+02 Score=27.31 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccC--------CchhhHHHHH----HHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQ----AIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~----~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
.++..+.+++++++|-..|-+-.+. +.+++++++. .+++..+++.|.||. |+++.+...++.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT---~~~~v~~~aL~~--- 91 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT---FNPEVAEAALKA--- 91 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC---CCHHHHHHHHHc---
Confidence 4556777999999999998887653 3355666553 334335799999995 556665555544
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
+.. +|=.-..-.+.+.+..|++ +.+.|+.+
T Consensus 92 -g~~--~ind~~~~~~~~~~~~l~a----~~~~~vV~ 121 (210)
T PF00809_consen 92 -GAD--IINDISGFEDDPEMLPLAA----EYGAPVVL 121 (210)
T ss_dssp -TSS--EEEETTTTSSSTTHHHHHH----HHTSEEEE
T ss_pred -Ccc--eEEecccccccchhhhhhh----cCCCEEEE
Confidence 332 5655555333566777765 45556543
No 317
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=49.40 E-value=2e+02 Score=25.95 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~ 284 (427)
++-+....+...+.|.+.+=+ |...+.-.+..+.+++.+|++.+.-= ++-|++++..+.++.+.+.+-.+.|+==-.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfll--G~~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLY--GGKPDVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 344445555555567655444 55444445567778888999887654 899998877778888887776656776666
Q ss_pred CC
Q 014285 285 HR 286 (427)
Q Consensus 285 ~~ 286 (427)
|.
T Consensus 111 Pk 112 (177)
T TIGR00696 111 PK 112 (177)
T ss_pred cH
Confidence 64
No 318
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.21 E-value=2.4e+02 Score=26.78 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCcEEEccc
Q 014285 342 GTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~ 362 (427)
...+++++|+++|+.+.+...
T Consensus 134 ~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 134 GLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHhCCEEEEEec
Confidence 456788999999999998764
No 319
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.84 E-value=2.1e+02 Score=27.74 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHhCCCcEEEEeC--C----CCCC--HHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 232 TADFDVLQAIHAVHPHCSFILDA--N----EGYT--SEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 232 ~~d~~~l~~ir~~~~~~~L~vDA--N----~~~s--~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
+.-++..+.+++.+-. -+|.-+ | .+|. .++.++.++. .+++|+. ++=+|+...+.+.+.+++.
T Consensus 41 ~~~~~~A~~lk~~g~~-~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~--~~te~~d~~~~~~l~~~vd----- 112 (266)
T PRK13398 41 EQMVKVAEKLKELGVH-MLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP--VVTEVMDTRDVEEVADYAD----- 112 (266)
T ss_pred HHHHHHHHHHHHcCCC-EEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC--EEEeeCChhhHHHHHHhCC-----
Confidence 3334445566665433 333331 1 2444 4555555554 4677874 8889998888777776642
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCC
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGL 355 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi 355 (427)
-+-|+..+ +.+..-++.+-..+. -|++|-...| +.+++..++..+..|-
T Consensus 113 -~~kIga~~-~~n~~LL~~~a~~gk--PV~lk~G~~~s~~e~~~A~e~i~~~Gn 162 (266)
T PRK13398 113 -MLQIGSRN-MQNFELLKEVGKTKK--PILLKRGMSATLEEWLYAAEYIMSEGN 162 (266)
T ss_pred -EEEECccc-ccCHHHHHHHhcCCC--cEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 24455443 233333344433333 3778888877 8888888888877665
No 320
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=48.82 E-value=1.7e+02 Score=29.61 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=75.6
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE--------EeC----C-CCC-CHHHHHHHHHH
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI--------LDA----N-EGY-TSEEAVEVLGK 269 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~--------vDA----N-~~~-s~~~A~~~l~~ 269 (427)
.+++..+.||+.+-+.... ++++.+++.+.+-+. += +.+|- ++. + .-| +|++|.+|.++
T Consensus 115 ~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~ 194 (345)
T cd00946 115 YFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEA 194 (345)
T ss_pred HHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHH
Confidence 3445567899999888765 788899888887652 10 12221 111 1 226 59999999997
Q ss_pred h------hh----CC-CCCceE-eCCCCCCChhhHHHHHHhhcccc------CCeEEec-CCCCCHHHHHHHHHcCCCcE
Q 014285 270 L------ND----MG-VIPVLF-EQPVHRDDWSGLHDVSNFARDTY------GISVVAD-ESCRSLNDVQKVMQENLASV 330 (427)
Q Consensus 270 L------~~----~~-l~~~~i-EqP~~~~d~~~~~~L~~~~r~~~------~iPIa~d-E~~~~~~~~~~ll~~~a~~~ 330 (427)
+ .- +| .|=.|- .+| .-|++-++++.+.+++.+ ++|+.+. =|=.+.++++++++.+ +.=
T Consensus 195 t~~~tgvD~LAvaiGt~HG~Y~~~~p--~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~G-I~K 271 (345)
T cd00946 195 LSKISPNFSIAAAFGNVHGVYKPGNV--KLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYG-VVK 271 (345)
T ss_pred hccCCCceeeeeeccccccCCCCCCC--ccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcC-Cee
Confidence 6 11 10 121133 333 457888888854333344 6787665 4767788899998876 444
Q ss_pred EEeCCC
Q 014285 331 VNIKLA 336 (427)
Q Consensus 331 i~lk~~ 336 (427)
||+...
T Consensus 272 iNi~T~ 277 (345)
T cd00946 272 MNIDTD 277 (345)
T ss_pred EEeCcH
Confidence 566543
No 321
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=48.22 E-value=2.5e+02 Score=27.10 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC-CeE
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISV 307 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPI 307 (427)
.+++...++++.+.+.+....+|=+.+-.-..+.++++.+.+++..+ +||
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l 198 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPL 198 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 45666667776666665543344444433334444444433333333 444
No 322
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=48.18 E-value=2.1e+02 Score=25.84 Aligned_cols=115 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe-----C
Q 014285 208 ASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE-----Q 282 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE-----q 282 (427)
..+.++.+.+.|...+-+..+.. +...+.++.+++.+.+..+.++.+ ++.+.++.+....++ +-..-++ |
T Consensus 68 ~~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~~~~~---t~~e~~~~~~~~~d~-i~~~~~~~g~tg~ 142 (210)
T TIGR01163 68 PDRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIVLNPA---TPLEFLEYVLPDVDL-VLLMSVNPGFGGQ 142 (210)
T ss_pred HHHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEEECCC---CCHHHHHHHHhhCCE-EEEEEEcCCCCcc
Q ss_pred CCCCCChhhHHHHHHhhccccC-----CeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 283 PVHRDDWSGLHDVSNFARDTYG-----ISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 283 P~~~~d~~~~~~L~~~~r~~~~-----iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.+.+..++.++++++ ..+ +||..+=-+ +.+.++++++.+ +|++.+
T Consensus 143 ~~~~~~~~~i~~i~~----~~~~~~~~~~i~v~GGI-~~env~~l~~~g-ad~iiv 192 (210)
T TIGR01163 143 KFIPDTLEKIREVRK----MIDENGLSILIEVDGGV-NDDNARELAEAG-ADILVA 192 (210)
T ss_pred cccHHHHHHHHHHHH----HHHhcCCCceEEEECCc-CHHHHHHHHHcC-CCEEEE
No 323
>PRK10060 RNase II stability modulator; Provisional
Probab=47.80 E-value=1.7e+02 Score=32.08 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=73.5
Q ss_pred EEeCCCCCCHHHHHHHHHHhhhCCCCCc--eEe--CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 251 ILDANEGYTSEEAVEVLGKLNDMGVIPV--LFE--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 251 ~vDAN~~~s~~~A~~~l~~L~~~~l~~~--~iE--qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
-+.+.+-.+++-.-.+.+.|+++++.+. .+| |....++.+...++.+.++ +.|+.|++|.--.+...+..+.. .
T Consensus 498 Nls~~~l~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~-~~G~~ialDdfGtg~ssl~~L~~-l 575 (663)
T PRK10060 498 NVSARQLADQTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFS-QLGAQVHLDDFGTGYSSLSQLAR-F 575 (663)
T ss_pred EcCHHHhCCCcHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHH-HCCCEEEEECCCCchhhHHHHHh-C
Confidence 3333333344433445555666554322 233 3322344544443333332 58999999988777777765544 5
Q ss_pred CCcEEEeCCCCcc-HH-------HHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCC
Q 014285 327 LASVVNIKLAKFG-VL-------GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 327 a~~~i~lk~~~~G-i~-------~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~ 381 (427)
.+|++-+|-+.+- +. -...++.+|++.|+.++..+ +|+. ....+...+|+
T Consensus 576 ~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG-VEt~----~q~~~l~~~G~ 633 (663)
T PRK10060 576 PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG-VETA----KEDAFLTKNGV 633 (663)
T ss_pred CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec-CCCH----HHHHHHHHcCC
Confidence 6999999976652 32 24568999999999999876 4653 34444444544
No 324
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=47.60 E-value=2.8e+02 Score=27.12 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeC---CCCCCHHHHHH----HHHHhhh--CCC
Q 014285 206 AEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDA---NEGYTSEEAVE----VLGKLND--MGV 275 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDA---N~~~s~~~A~~----~l~~L~~--~~l 275 (427)
+...+.+...++.||+.|.--.--. .+...=++|++.+ +--+|.|.. |.....+++++ -+++|.- .+
T Consensus 28 ~~~~~av~~Al~~Gyr~IDTA~~Yg--nE~~VG~aI~~s~v~ReelFittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvD- 104 (280)
T COG0656 28 EWAVRAVRAALELGYRLIDTAEIYG--NEEEVGEAIKESGVPREELFITTKVWPSDLGYDETLKALEASLKRLGLDYVD- 104 (280)
T ss_pred hhHHHHHHHHHHhCcceEecHhHhc--CHHHHHHHHHhcCCCHHHeEEEeecCCccCCcchHHHHHHHHHHHhCCCcee-
Confidence 3366777778899999987543211 1222235666632 322333332 12222333333 3344432 23
Q ss_pred CCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC--CcEEEeCCCCccHHHHHHHH
Q 014285 276 IPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL--ASVVNIKLAKFGVLGTLQII 347 (427)
Q Consensus 276 ~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a--~~~i~lk~~~~Gi~~~~~~~ 347 (427)
.+.|=.|.+. +-|..|.++.+ .|.==+.|=|-.+.+.++++++... +.+-|+...- ...-.+++
T Consensus 105 -LyLiHwP~~~~~~~~~etw~alE~l~~-----~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp--~~~q~el~ 176 (280)
T COG0656 105 -LYLIHWPVPNKYVVIEETWKALEELVD-----EGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHP--YLRQPELL 176 (280)
T ss_pred -EEEECCCCCccCccHHHHHHHHHHHHh-----cCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEecc--CCCcHHHH
Confidence 2567788763 55677777753 3443455678899999999997643 5556665533 22334499
Q ss_pred HHHHHcCCcEEEcccCc
Q 014285 348 KATRKSGLHLMIDGMIE 364 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~e 364 (427)
..|+++||.+.-.|.++
T Consensus 177 ~~~~~~gI~v~AysPL~ 193 (280)
T COG0656 177 PFCQRHGIAVEAYSPLA 193 (280)
T ss_pred HHHHHcCCEEEEECCcc
Confidence 99999999999888775
No 325
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=47.35 E-value=3.2e+02 Score=27.75 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (427)
+.++..+.++.+.+.|+..|-+-+-..-+.|.+.++.+++.+....+.+-+ ....++ ++.+.+.++. +|-=-
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~d----i~~a~~~g~~--~i~i~ 95 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALN--RAVKSD----IDASIDCGVD--AVHIF 95 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEc--ccCHHH----HHHHHhCCcC--EEEEE
Confidence 567777888888888998887643223356677888888765555554442 222333 2222233433 22222
Q ss_pred CCCCCh--------------hhHHHHHHhhccccCCeEEe---cCCCCCHHHHH----HHHHcCCCcEEEe-CCCCcc-H
Q 014285 284 VHRDDW--------------SGLHDVSNFARDTYGISVVA---DESCRSLNDVQ----KVMQENLASVVNI-KLAKFG-V 340 (427)
Q Consensus 284 ~~~~d~--------------~~~~~L~~~~r~~~~iPIa~---dE~~~~~~~~~----~ll~~~a~~~i~l-k~~~~G-i 340 (427)
++..+. +.+.+..+.++ ..+..+.. |.+-.+...+. .+.+.+ ++.|.+ |..-.. .
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~-~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT~G~~~P 173 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAK-DHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDTVGILDP 173 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCH
Confidence 222222 33333333332 24554543 33445555443 333444 556555 443222 4
Q ss_pred HHHHHHHHHHH-HcCCcEEEcccCchhHHHH
Q 014285 341 LGTLQIIKATR-KSGLHLMIDGMIETRLATG 370 (427)
Q Consensus 341 ~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~ 370 (427)
.+..++++..+ ..++++-+|+-...|++.+
T Consensus 174 ~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~A 204 (378)
T PRK11858 174 FTMYELVKELVEAVDIPIEVHCHNDFGMATA 204 (378)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCcCHHHH
Confidence 45666665544 4488888888665555544
No 326
>PRK07094 biotin synthase; Provisional
Probab=46.96 E-value=2.5e+02 Score=27.59 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEc
Q 014285 340 VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~ 360 (427)
....++.++.++++|+.+..+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred HHHHHHHHHHHHHcCCeecce
Confidence 667788888888888876543
No 327
>PLN02389 biotin synthase
Probab=46.90 E-value=3.3e+02 Score=27.77 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec----cCC----chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH--hhh
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNV----GRN----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK--LND 272 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKi----G~~----~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~--L~~ 272 (427)
.+++++.+.+++..+.|++.|=+-. +.+ ++.=.+.++.+++.+. . +-++-+...++.++.|+. +..
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l--~--i~~s~G~l~~E~l~~LkeAGld~ 191 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM--E--VCCTLGMLEKEQAAQLKEAGLTA 191 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc--E--EEECCCCCCHHHHHHHHHcCCCE
Confidence 4789999999988899999876532 112 2333445566654432 3 345555544444444432 343
Q ss_pred CCCCCceEe-------CCCCCCChhhHHHHHHhhccccCCeEE------ecCCCCCHHHHHHHHHcC--CCcEEE-----
Q 014285 273 MGVIPVLFE-------QPVHRDDWSGLHDVSNFARDTYGISVV------ADESCRSLNDVQKVMQEN--LASVVN----- 332 (427)
Q Consensus 273 ~~l~~~~iE-------qP~~~~d~~~~~~L~~~~r~~~~iPIa------~dE~~~~~~~~~~ll~~~--a~~~i~----- 332 (427)
+++ -+| +=++..+|+..-+..+.++ +.++++. ++|+.....+....+..- .++.+.
T Consensus 192 ~~~---~LeTs~~~y~~i~~~~s~e~rl~ti~~a~-~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~ 267 (379)
T PLN02389 192 YNH---NLDTSREYYPNVITTRSYDDRLETLEAVR-EAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALV 267 (379)
T ss_pred EEe---eecCChHHhCCcCCCCCHHHHHHHHHHHH-HcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccce
Confidence 332 244 3334456654333222221 3555553 456544443433344332 244333
Q ss_pred eCC-CCc-----c-HHHHHHHHHHHHHcC
Q 014285 333 IKL-AKF-----G-VLGTLQIIKATRKSG 354 (427)
Q Consensus 333 lk~-~~~-----G-i~~~~~~~~~A~~~g 354 (427)
+-+ +.+ . ..+.++++++++-.-
T Consensus 268 P~~GTpL~~~~~~s~~e~lr~iAi~Rl~l 296 (379)
T PLN02389 268 AVKGTPLEDQKPVEIWEMVRMIATARIVM 296 (379)
T ss_pred ecCCCcCCCCCCCCHHHHHHHHHHHHHHC
Confidence 211 111 2 556788888887653
No 328
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=45.82 E-value=2.5e+02 Score=26.39 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=61.7
Q ss_pred HHHhhcCCcEEEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEeCCCCC---
Q 014285 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHR--- 286 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqP~~~--- 286 (427)
+...++|-..+-+---.+.. -...++++. --+..+++|--+.|+++++.+.++.+.. ..+| .-+-+...-
T Consensus 74 ~ma~~aGAd~~tV~g~A~~~---TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H-~g~D~q~~G~~~ 149 (217)
T COG0269 74 RMAFEAGADWVTVLGAADDA---TIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH-RGRDAQAAGKSW 149 (217)
T ss_pred HHHHHcCCCEEEEEecCCHH---HHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE-ecccHhhcCCCc
Confidence 33446676655543322222 222333332 2358999999999999999888885432 1122 122222211
Q ss_pred --CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 287 --DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 287 --~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
++++.++++.. ....+-|+.| .++.++..+...+ +++++.--
T Consensus 150 ~~~~l~~ik~~~~---~g~~vAVaGG---I~~~~i~~~~~~~-~~ivIvGr 193 (217)
T COG0269 150 GEDDLEKIKKLSD---LGAKVAVAGG---ITPEDIPLFKGIG-ADIVIVGR 193 (217)
T ss_pred cHHHHHHHHHhhc---cCceEEEecC---CCHHHHHHHhcCC-CCEEEECc
Confidence 23445555542 1245667776 5677777666654 77777643
No 329
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=45.63 E-value=3.4e+02 Score=27.55 Aligned_cols=137 Identities=15% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCC-chhhH-HHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRN-ITADF-DVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-~~~d~-~~l~~ir~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
.+.+++.+.++...+.|.+.|.+--|-. +..|+ +.++.+++. +++ .+.+..||..-.+.+ +.|.+.++. +
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~-~gi~~i~itTNG~lL~~~~----~~L~~aGld--~ 162 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSL-KGLKTLAMTTNGITLSRKL----PRLKEAGLT--S 162 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhc-CCCceEEEeeCcchHHHHH----HHHHhCCCC--e
Confidence 3667887777777788988888766632 34443 455666665 344 588999997755443 344444432 2
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-c--HHHHHHHHHHHHHcCCc
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G--VLGTLQIIKATRKSGLH 356 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-G--i~~~~~~~~~A~~~gi~ 356 (427)
|-==+..-+.+.+.++++ .-+ .++ -...++.+.+.+. .-+.+....+ | ..+..++++++++.|+.
T Consensus 163 VnISLDsl~~e~~~~itr----~~~----~~~---vl~~I~~a~~~G~-~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~ 230 (373)
T PLN02951 163 LNISLDTLVPAKFEFLTR----RKG----HDR---VLESIDTAIELGY-NPVKVNCVVMRGFNDDEICDFVELTRDKPIN 230 (373)
T ss_pred EEEeeccCCHHHHHHHhc----CCC----HHH---HHHHHHHHHHcCC-CcEEEEEEecCCCCHHHHHHHHHHHHhCCCe
Confidence 221122223355666642 111 011 1223344555442 1122222222 5 56788888899998877
Q ss_pred EE
Q 014285 357 LM 358 (427)
Q Consensus 357 ~~ 358 (427)
+.
T Consensus 231 vr 232 (373)
T PLN02951 231 VR 232 (373)
T ss_pred EE
Confidence 64
No 330
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=45.55 E-value=3.3e+02 Score=27.37 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEe
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFE 281 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iE 281 (427)
.|.+...+|+.++.++|-..+.+-+-. .++.+.+..|++.. .+.|..|-+--| ..|+..++. ++.+.+.
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~--~~~A~al~~I~~~~-~iPlVADIHFd~--~lAl~a~~~g~dkiRIN----- 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPD--RESAAAFEAIKEGT-NVPLVADIHFDY--RLAALAMAKGVAKVRIN----- 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHhCC-CCCEEEeeCCCc--HHHHHHHHhccCeEEEC-----
Confidence 356667889999999999988887742 56777888888843 488999987544 444444443 4444332
Q ss_pred CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEc
Q 014285 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 282 qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (427)
|=.-++.+..+++.+.++ ..++||=.|=+.-++. +++++... +++--+ +..+++.++++++.|..=.+=
T Consensus 101 -PGNig~~e~v~~vv~~ak-~~~ipIRIGVN~GSL~--~~~~~kyg------~~t~eamveSAl~~v~~le~~~F~divi 170 (346)
T TIGR00612 101 -PGNIGFRERVRDVVEKAR-DHGKAMRIGVNHGSLE--RRLLEKYG------DATAEAMVQSALEEAAILEKLGFRNVVL 170 (346)
T ss_pred -CCCCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCc--HHHHHHcC------CCCHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 221122333444433332 5688888887776665 46665432 134447 677899999999998774443
Q ss_pred ccCchh--HHHHHHHHHHh
Q 014285 361 GMIETR--LATGFALHLAA 377 (427)
Q Consensus 361 s~~es~--ig~~a~~hlaa 377 (427)
|+=.|+ ....|.-.++.
T Consensus 171 S~KsSdv~~~i~ayr~la~ 189 (346)
T TIGR00612 171 SMKASDVAETVAAYRLLAE 189 (346)
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 322333 33444444443
No 331
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.36 E-value=3.2e+02 Score=28.96 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 253 DANEG----YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 253 DAN~~----~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
|.+|+ |+.++-+++++.|.+.|++ .||=-.+.-.-.++..+.+.........|+.-=... ..+++.+++.+ .
T Consensus 12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~-~~di~~a~~~g-~ 87 (488)
T PRK09389 12 DGEQTPGVSLTPEEKLEIARKLDELGVD--VIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAV-KVDIDAALECD-V 87 (488)
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHcCCC--EEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccC-HHHHHHHHhCC-c
Q ss_pred cEEEeCCCCccH--------------HHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 329 SVVNIKLAKFGV--------------LGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 329 ~~i~lk~~~~Gi--------------~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
+.+.+=.+..-+ ..+.+.+++|+++|+.+.++..-.+-.-......++.+.
T Consensus 88 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 88 DSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAG 152 (488)
T ss_pred CEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHH
No 332
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.11 E-value=2e+02 Score=26.16 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
++++|.+.++.+-+.|+. |+|=..+..+..+.-+..+.+ ...+-+. .-.+...++++.+++.+ .|++..-- .
T Consensus 22 ~~~~~~~~~~~~~~~Gv~--~vqlr~k~~~~~e~~~~~~~~--~~~~~~g-~gtvl~~d~~~~A~~~g-Adgv~~p~--~ 93 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMR--LIEITWNSDQPAELISQLREK--LPECIIG-TGTILTLEDLEEAIAAG-AQFCFTPH--V 93 (187)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHh--CCCcEEe-EEEEEcHHHHHHHHHcC-CCEEECCC--C
Confidence 789999999999999986 999998876655544444321 1112122 23566678888888775 56653211 1
Q ss_pred cHHHHHHHHHHHHHcCCcEEEccc
Q 014285 339 GVLGTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 339 Gi~~~~~~~~~A~~~gi~~~~~s~ 362 (427)
| .+....++.+++..++++.
T Consensus 94 ~----~~~~~~~~~~~~~~i~G~~ 113 (187)
T PRK07455 94 D----PELIEAAVAQDIPIIPGAL 113 (187)
T ss_pred C----HHHHHHHHHcCCCEEcCcC
Confidence 1 4567788899999999854
No 333
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=45.04 E-value=3.6e+02 Score=27.57 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHH-HHHHHhCCCcEEEEeC-CCCCC---HHHHHHHH-HHhhhCCCC-
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVL-QAIHAVHPHCSFILDA-NEGYT---SEEAVEVL-GKLNDMGVI- 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l-~~ir~~~~~~~L~vDA-N~~~s---~~~A~~~l-~~L~~~~l~- 276 (427)
+.+.+.+.++..++.|++.|---.+-....-..-+ +++.+.. .-++-+-. --+|. .++-.+++ +.|+.++..
T Consensus 32 d~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~-Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy 110 (391)
T COG1453 32 DEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGY-REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDY 110 (391)
T ss_pred cHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcc-cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCch
Confidence 45566777888888999888776653222222233 3333332 22222222 22342 44444444 235544321
Q ss_pred -CceEeCCCCCCChhhHHHH-----HHhhccccCCeEEecCCCC-CHHHHHHHHHcCCCcEEEeCCCCcc--HHHHHHHH
Q 014285 277 -PVLFEQPVHRDDWSGLHDV-----SNFARDTYGISVVADESCR-SLNDVQKVMQENLASVVNIKLAKFG--VLGTLQII 347 (427)
Q Consensus 277 -~~~iEqP~~~~d~~~~~~L-----~~~~r~~~~iPIa~dE~~~-~~~~~~~ll~~~a~~~i~lk~~~~G--i~~~~~~~ 347 (427)
-+|+=.-+..+.|+.+.++ .+.+++.-.|.- +|=|.+ +...+.+++.+...|++|+--..+- -....+.+
T Consensus 111 ~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~-~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l 189 (391)
T COG1453 111 IDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRN-AGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGL 189 (391)
T ss_pred hhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEE-eeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHH
Confidence 0122222223334333322 222222334444 444554 4556799999999999999887764 22225778
Q ss_pred HHHHHcCCcEEEcccC
Q 014285 348 KATRKSGLHLMIDGMI 363 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~ 363 (427)
+.|.++|+++.+=+.+
T Consensus 190 ~~A~~~~~gI~IMeP~ 205 (391)
T COG1453 190 KYAASKGLGIFIMEPL 205 (391)
T ss_pred HHHHhCCCcEEEEeeC
Confidence 8999999999886655
No 334
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=45.00 E-value=6e+02 Score=30.15 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhh--cCCcEEEEeccCCch--------hhHHHHHHHHHhCCCcEEEEeCCCC----CC--HHHH-HHHH
Q 014285 205 PAEASELASKYCK--LGFSTLKLNVGRNIT--------ADFDVLQAIHAVHPHCSFILDANEG----YT--SEEA-VEVL 267 (427)
Q Consensus 205 ~~~~~~~~~~~~~--~Gf~~iKlKiG~~~~--------~d~~~l~~ir~~~~~~~L~vDAN~~----~s--~~~A-~~~l 267 (427)
.++|...+..+.+ .||..+-+--|.-|+ .=.+||+.+|+..|++.|..=..|. |+ +++. ..+.
T Consensus 552 t~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~ 631 (1143)
T TIGR01235 552 THDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFV 631 (1143)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHH
Confidence 4567666766654 499999998886432 3478999999988887665433332 43 4554 4577
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC----eEEe-----c--CCCCCHHH---H-HHHHHcCCCcEEE
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI----SVVA-----D--ESCRSLND---V-QKVMQENLASVVN 332 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i----PIa~-----d--E~~~~~~~---~-~~ll~~~a~~~i~ 332 (427)
+...+.|+.+..|=+++. |.+.|..-.+.+++ .+. -|+- | ...+++.. + +++.+. .+|.|.
T Consensus 632 ~~~~~~GidifrifD~lN--~~~n~~~~~~~~~~-~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~-Gad~I~ 707 (1143)
T TIGR01235 632 KQAAQGGIDIFRVFDSLN--WVENMRVGMDAVAE-AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA-GAHILG 707 (1143)
T ss_pred HHHHHcCCCEEEECccCc--CHHHHHHHHHHHHH-cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc-CCCEEE
Confidence 777888887777767765 45555554443332 222 2221 1 22445542 2 445554 478888
Q ss_pred eCCCCcc---HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 333 IKLAKFG---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 333 lk~~~~G---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
+|=+- | ...+.+++...+ +.++++.+|+-..+|++.+.
T Consensus 708 ikDt~-Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an 749 (1143)
T TIGR01235 708 IKDMA-GLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVAS 749 (1143)
T ss_pred ECCCc-CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHH
Confidence 87654 5 445666655544 45899999987666666554
No 335
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=44.09 E-value=3.4e+02 Score=27.00 Aligned_cols=93 Identities=15% Similarity=0.293 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCcEEEEeCCC----CCCHHHHHHHHHHhhhCCC--CCceE-e--CCCCCCChh----hHHHHHHhhccc
Q 014285 236 DVLQAIHAVHPHCSFILDANE----GYTSEEAVEVLGKLNDMGV--IPVLF-E--QPVHRDDWS----GLHDVSNFARDT 302 (427)
Q Consensus 236 ~~l~~ir~~~~~~~L~vDAN~----~~s~~~A~~~l~~L~~~~l--~~~~i-E--qP~~~~d~~----~~~~L~~~~r~~ 302 (427)
+-++.+|+..++..+.+--|. .++++++.+.++.++...+ |+... | +|-...+++ .+++++ +.
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~----~~ 176 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELV----KA 176 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHH----Hh
Confidence 566777887776655544433 5688888888777754322 21000 2 333444564 344444 36
Q ss_pred cCCeEEecCC--CCCHHHHHHHHHcCCCcEEEe
Q 014285 303 YGISVVADES--CRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 303 ~~iPIa~dE~--~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++||..=|. -.+.++.+.+.+. .+|+|.+
T Consensus 177 ~~vPVivK~~g~g~s~~~a~~l~~~-Gvd~I~v 208 (326)
T cd02811 177 LSVPVIVKEVGFGISRETAKRLADA-GVKAIDV 208 (326)
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHc-CCCEEEE
Confidence 7899998663 2456677766665 4888875
No 336
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=43.69 E-value=3e+02 Score=26.33 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC------CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+++. .+++.+.+=+.. -+.+++++.++..++.|..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHHHHHHHHHcCCC
Confidence 67778888999999998887543321 233445566777774 556777766654 4677899999999988765
Q ss_pred CceEeCCCC--CCC---hhhHHHHHHhhccccCCeEEecC------CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHH
Q 014285 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTL 344 (427)
Q Consensus 277 ~~~iEqP~~--~~d---~~~~~~L~~~~r~~~~iPIa~dE------~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~ 344 (427)
-..+=-|.. ..+ ++-++++++ .+++||.+=. ...+.+.+.++.+ .+.++-+|-+- | +....
T Consensus 95 ~v~v~pP~y~~~~~~~~~~~~~~ia~----~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~giK~s~-~d~~~~~ 167 (281)
T cd00408 95 GVLVVPPYYNKPSQEGIVAHFKAVAD----ASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGIKDSS-GDLDRLT 167 (281)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHh----cCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHHH
Confidence 335555542 111 223455554 5789987531 2345666777774 47888899876 5 66666
Q ss_pred HHHHHHHHcCCcEEEc
Q 014285 345 QIIKATRKSGLHLMID 360 (427)
Q Consensus 345 ~~~~~A~~~gi~~~~~ 360 (427)
++++.. ..++.+..+
T Consensus 168 ~~~~~~-~~~~~v~~G 182 (281)
T cd00408 168 RLIALL-GPDFAVLSG 182 (281)
T ss_pred HHHHhc-CCCeEEEEc
Confidence 665433 235555544
No 337
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=43.56 E-value=4.2e+02 Score=27.95 Aligned_cols=117 Identities=25% Similarity=0.328 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCcEEEEecc-CCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe---CC-
Q 014285 209 SELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---QP- 283 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG-~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---qP- 283 (427)
.+.++.+++.|.+.+-+..- .....-++.++.+|+.+|++.+.+ ....|.++|....+. +.. +|- =|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~~a----Gad--~i~vg~g~g 301 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALIEA----GAD--AVKVGIGPG 301 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHHHc----CCC--EEEECCCCC
Confidence 56777888899998877753 223455677888888888888777 445688888777653 321 331 01
Q ss_pred -------C---CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 284 -------V---HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 284 -------~---~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+ ...+++.+.++++.+ ++.++||..|--+.+..|+.+++..+ ++.+.+--
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~-~~~~~~viadGGi~~~~di~kAla~G-A~~v~~G~ 361 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAA-KKYGIPVIADGGIRYSGDIAKALAAG-ASAVMLGS 361 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCCCCHHHHHHHHHhC-CCEEEECc
Confidence 0 011455555554432 24689999999999999999999876 56666543
No 338
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=43.38 E-value=3.6e+02 Score=27.20 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (427)
+.++..+.++.+.+.|++.|-+-+-..-+.|.+.++.+++..++.++..=+ +.+.++ + +...+.++....+=-|
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~d-i---~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWC--RARDAD-I---EAAARCGVDAVHISIP 94 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEc--CCCHHH-H---HHHHcCCcCEEEEEEc
Confidence 577777888888889999887754333356678888888876655554322 223333 2 2222333321223334
Q ss_pred CCC------------CChhhHHHHHHhhccccCCeEEec---CCCCCHHHH----HHHHHcCCCcEEEeCCCC-cc-HHH
Q 014285 284 VHR------------DDWSGLHDVSNFARDTYGISVVAD---ESCRSLNDV----QKVMQENLASVVNIKLAK-FG-VLG 342 (427)
Q Consensus 284 ~~~------------~d~~~~~~L~~~~r~~~~iPIa~d---E~~~~~~~~----~~ll~~~a~~~i~lk~~~-~G-i~~ 342 (427)
+.. +.++.+.+..+.++ ..+..+..+ .+-.+...+ +.+.+.+ ++.|.+.=+. .. ...
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak-~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~i~l~DT~G~~~P~~ 172 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFAR-DRGLFVSVGGEDASRADPDFLVELAEVAAEAG-ADRFRFADTVGILDPFS 172 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHH-hCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC-cCEEEEcccCCCCCHHH
Confidence 431 01222222222222 234444333 233344443 3333443 6666664333 22 445
Q ss_pred HHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 343 TLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 343 ~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
..++++..+ ..++++-+|+-...|++.+.
T Consensus 173 v~~lv~~l~~~~~v~l~~H~HNd~GlA~AN 202 (365)
T TIGR02660 173 TYELVRALRQAVDLPLEMHAHNDLGMATAN 202 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCChHHHH
Confidence 666665544 44788888886666655543
No 339
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=43.23 E-value=1.8e+02 Score=32.20 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=43.0
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-H----------------------HHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V----------------------LGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i----------------------~~~~~~~~~A~~~gi~~~ 358 (427)
.+.+|+.+|=+.. ..-...+++ .++-|.+.|..+| - .....+++.|+++|+++-
T Consensus 151 g~~iPLVADIHF~-~~~Al~a~~--~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iR 227 (733)
T PLN02925 151 GYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMR 227 (733)
T ss_pred CCCCCEEEecCCC-HHHHHHHHH--hcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEE
Confidence 5789999986543 333334444 3899999999887 4 234569999999999998
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
++...
T Consensus 228 IGvN~ 232 (733)
T PLN02925 228 IGTNH 232 (733)
T ss_pred EecCC
Confidence 87543
No 340
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=42.19 E-value=3.7e+02 Score=27.01 Aligned_cols=155 Identities=13% Similarity=0.112 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEeC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQ 282 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iEq 282 (427)
|.+...+++.++.+.|-..+.+-+-. .++.+.+..|++.- ++.|..|-+-- +.-|++..+. ++.+.+.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~--~e~A~A~~~Ik~~~-~vPLVaDiHf~--~rla~~~~~~g~~k~RIN------ 102 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPD--MEAAEALKEIKQRL-NVPLVADIHFD--YRLALEAAECGVDKVRIN------ 102 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhC-CCCEEEEeecc--HHHHHHhhhcCcceEEEC------
Confidence 55667888889989999998888753 57888899998854 78899998754 5555666655 6655443
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc
Q 014285 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 283 P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (427)
|=.-+.-+..+.+.+.++ ..++||-.|=+.-+++ +++++... .|+.=+ +..+++.++++++.|.+=..=|
T Consensus 103 PGNig~~~~v~~vVe~Ak-~~g~piRIGVN~GSLe--k~~~~ky~------~pt~ealveSAl~~a~~~e~l~f~~i~iS 173 (361)
T COG0821 103 PGNIGFKDRVREVVEAAK-DKGIPIRIGVNAGSLE--KRLLEKYG------GPTPEALVESALEHAELLEELGFDDIKVS 173 (361)
T ss_pred CcccCcHHHHHHHHHHHH-HcCCCEEEecccCchh--HHHHHHhc------CCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 222222233444444332 5789998887777765 34444322 445557 6778899999999887744333
Q ss_pred cCchh--HHHHHHHHHHhh
Q 014285 362 MIETR--LATGFALHLAAG 378 (427)
Q Consensus 362 ~~es~--ig~~a~~hlaaa 378 (427)
+=-|+ ...++.-.||..
T Consensus 174 ~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 174 VKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEcCCHHHHHHHHHHHHHh
Confidence 22232 334445555543
No 341
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=42.02 E-value=1.6e+02 Score=28.34 Aligned_cols=93 Identities=15% Similarity=0.289 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeC------C----CCCC-ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQ------P----VHRD-DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq------P----~~~~-d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
.+++++++.++.+.+.|-+ +|.= | +.++ +++.+..+-+.+++.+++||+.|= .+..-++..++.+
T Consensus 20 ~~~~~~~~~a~~~~~~GA~--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT--~~~~vi~~al~~G 95 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGAD--IIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT--YRAEVARAALEAG 95 (257)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCHHHHHHHHHcC
Confidence 4567777777666655543 4432 1 1111 222233333444445689999973 4666778888874
Q ss_pred CCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEE
Q 014285 327 LASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 327 a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (427)
+++|+= .+ |.. .-+++.+++++|.++++
T Consensus 96 -~~iINs-is--~~~-~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 96 -ADIIND-VS--GGQ-DPAMLEVAAEYGVPLVL 123 (257)
T ss_pred -CCEEEE-CC--CCC-CchhHHHHHHcCCcEEE
Confidence 666542 21 222 34677788899999876
No 342
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=41.92 E-value=2.9e+02 Score=28.04 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=71.6
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEE--------EEeC-----CCCC-CHHHHHHHHHHh------hh
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF--------ILDA-----NEGY-TSEEAVEVLGKL------ND 272 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L--------~vDA-----N~~~-s~~~A~~~l~~L------~~ 272 (427)
|+.+-+.-.. ++++.++..+.+.+. += +.+| .++. +.-| +|++|.+|.++. .-
T Consensus 136 ftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~ 215 (357)
T TIGR01520 136 FSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFS 215 (357)
T ss_pred CceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcce
Confidence 9999999764 789999988887662 20 1111 1111 1236 599999999865 11
Q ss_pred ----CC-CCCceE-eCCCCCCChhhHHHHHHhhccccCCe-------EEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 273 ----MG-VIPVLF-EQPVHRDDWSGLHDVSNFARDTYGIS-------VVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 273 ----~~-l~~~~i-EqP~~~~d~~~~~~L~~~~r~~~~iP-------Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+| .|=.|- +.| .-|++-++++.+.+++.+++| +.-|=|=...++++++++.+ +.=||+..-.
T Consensus 216 LAvAiGT~HG~Yk~~~p--~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~G-I~KINi~Tdl 290 (357)
T TIGR01520 216 IAAAFGNVHGVYKPGNV--KLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYG-VVKMNIDTDT 290 (357)
T ss_pred eeeeeccccCCcCCCCC--ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcHH
Confidence 10 121242 443 457888888853322356888 45556778888999999876 4446666543
No 343
>PRK06256 biotin synthase; Validated
Probab=41.79 E-value=2.4e+02 Score=27.92 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEccc
Q 014285 340 VLGTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s~ 362 (427)
....++.++.|++.|+.+..+..
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I 208 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGI 208 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeE
Confidence 66778888889999998765543
No 344
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=41.77 E-value=1.5e+02 Score=29.09 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=57.4
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
+..+.++.. ...+.||..|--+.-.....-.+.++++|.+..++. .-.+||.++...+.+.
T Consensus 118 D~stleEal----~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~----~~~gyt~~t~~~~~~~----------- 178 (283)
T cd04727 118 GARNLGEAL----RRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIR----KLQSMSEEELYAVAKE----------- 178 (283)
T ss_pred cCCCHHHHH----HHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHH----HHhCCCHHHHHhhhcc-----------
Confidence 344555543 345789999988873322222344444444321111 1124444431111100
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEE-ecC-CCCCHHHHHHHHHcCCCcEEEe
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVV-ADE-SCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa-~dE-~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+ .-+++.++++++ ..++||. .-| .+.++.++.++++.+ ++.+.+
T Consensus 179 ~----~~d~elLk~l~~----~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaV 224 (283)
T cd04727 179 I----QAPYELVKETAK----LGRLPVVNFAAGGVATPADAALMMQLG-ADGVFV 224 (283)
T ss_pred c----CCCHHHHHHHHH----hcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 1 226788888876 5679996 244 456999999999976 555544
No 345
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=41.77 E-value=3.3e+02 Score=26.18 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=75.7
Q ss_pred eecCCCHHHHHHHHHHHhhc-CCcEEEEeccCC----chhhHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHhh
Q 014285 199 TIPAVSPAEASELASKYCKL-GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFI-LDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKiG~~----~~~d~~~l~~ir~~-~~~~~L~-vDAN~~~s~~~A~~~l~~L~ 271 (427)
+-+..+.+|....++-.++. |-+-||+.|=.| +.+-.+.+++.+++ -+++... +=+ =++ ...++|+
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~---dd~----~~ar~l~ 141 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCT---DDP----VLAKRLE 141 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeC---CCH----HHHHHHH
Confidence 34556788877666666664 678999998543 33456677777774 3444433 211 133 3455566
Q ss_pred hCCCCCceEeCC----CCC----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 272 DMGVIPVLFEQP----VHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 272 ~~~l~~~~iEqP----~~~----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+++.. .+ -| +-. -+.+.++.+++ ..++||..|=-+.+..|+.++++.+ +|.+.+
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelG-AdgVlV 203 (248)
T cd04728 142 DAGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLL 203 (248)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 66653 44 33 221 14556666664 5789999999999999999999987 555544
No 346
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=41.71 E-value=1.8e+02 Score=29.27 Aligned_cols=138 Identities=10% Similarity=0.105 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCcEEEEeccCCchh---hHHHHHHHHH-h-CCCcEEEEeCCCC------CCHHHHHHHHHHhhhCCC
Q 014285 207 EASELASKYCKLGFSTLKLNVGRNITA---DFDVLQAIHA-V-HPHCSFILDANEG------YTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~~~~~---d~~~l~~ir~-~-~~~~~L~vDAN~~------~s~~~A~~~l~~L~~~~l 275 (427)
+-.+-++.+.+.||+.+=+-++..-++ ..++++.+-+ + .-+++++||+|.+ ||+.. +.+.+.+.-.++
T Consensus 17 ~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~-l~~f~e~G~~gl 95 (360)
T COG3589 17 KDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDN-LSRFQELGVDGL 95 (360)
T ss_pred hHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHH-HHHHHHhhhhhe
Confidence 335567777889999998888753223 3455555544 2 3589999999976 45543 445555544444
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC------CCC-ccH--HHHHHH
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK------LAK-FGV--LGTLQI 346 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk------~~~-~Gi--~~~~~~ 346 (427)
+ +..-++ -++.++++ +.++-|.+.=|..+. .+..+++.+ ++.=++. |-. .|+ .-.++.
T Consensus 96 R---lD~gfS---~eei~~ms-----~~~lkieLN~S~it~-~l~~l~~~~-an~~nl~~cHNyYPr~yTGLS~e~f~~k 162 (360)
T COG3589 96 R---LDYGFS---GEEIAEMS-----KNPLKIELNASTITE-LLDSLLAYK-ANLENLEGCHNYYPRPYTGLSREHFKRK 162 (360)
T ss_pred e---ecccCC---HHHHHHHh-----cCCeEEEEchhhhHH-HHHHHHHhc-cchhhhhhcccccCCcccCccHHHHHHH
Confidence 3 333333 24455565 345888887776665 555555432 3333332 222 363 235677
Q ss_pred HHHHHHcCCcEE
Q 014285 347 IKATRKSGLHLM 358 (427)
Q Consensus 347 ~~~A~~~gi~~~ 358 (427)
-+.-+.+|++.+
T Consensus 163 n~~fk~~~i~t~ 174 (360)
T COG3589 163 NEIFKEYNIKTA 174 (360)
T ss_pred HHHHHhcCCceE
Confidence 777888888875
No 347
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=41.63 E-value=3.2e+02 Score=26.11 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (427)
+.++..+.++.+.+.|++.|-+-....-+.|.+.++.+++..++.++..=+... .++....++.....++....+=-|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~--~~~v~~a~~~~~~~~~~~i~i~~~ 95 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAV--KKDIDAAAEALKPAKVDRIHTFIA 95 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCC--HhhHHHHHHhCCCCCCCEEEEEec
Confidence 577778888899999999988754332246788999998866666665433211 222222233332211221123334
Q ss_pred CCC------------CChhhHHHHHHhhccccCCeEEec---CCCCCHHHH----HHHHHcCCCcEEEeCCCC-cc-HHH
Q 014285 284 VHR------------DDWSGLHDVSNFARDTYGISVVAD---ESCRSLNDV----QKVMQENLASVVNIKLAK-FG-VLG 342 (427)
Q Consensus 284 ~~~------------~d~~~~~~L~~~~r~~~~iPIa~d---E~~~~~~~~----~~ll~~~a~~~i~lk~~~-~G-i~~ 342 (427)
+.. ++++...+..+.++ ..+..|..+ ..-.+...+ +++.+.+ ++.|.++=+. .. ...
T Consensus 96 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~ 173 (268)
T cd07940 96 TSDIHLKYKLKKTREEVLERAVEAVEYAK-SHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEE 173 (268)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHH
Confidence 421 12333333333332 235555433 333555554 3444444 6666664443 33 556
Q ss_pred HHHHHHHHHHc-C---CcEEEcccCchhHHHH
Q 014285 343 TLQIIKATRKS-G---LHLMIDGMIETRLATG 370 (427)
Q Consensus 343 ~~~~~~~A~~~-g---i~~~~~s~~es~ig~~ 370 (427)
..++++..+++ + +++.+|+-...+++++
T Consensus 174 v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 174 FGELIKKLKENVPNIKVPISVHCHNDLGLAVA 205 (268)
T ss_pred HHHHHHHHHHhCCCCceeEEEEecCCcchHHH
Confidence 77777766654 4 7888887655554443
No 348
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=40.94 E-value=2.2e+02 Score=28.89 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=65.1
Q ss_pred CeEEecCCCCCH---HHHHHHHHcCCCcEEEeCCCCcc--HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 305 ISVVADESCRSL---NDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 305 iPIa~dE~~~~~---~~~~~ll~~~a~~~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
+-|..|-.+... .-.++.|+.+...+-+-|-.+.- +....+.++.|++.+...++.---+|..-.+-++.|-+.-
T Consensus 73 ~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn 152 (465)
T KOG3857|consen 73 TLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASN 152 (465)
T ss_pred eEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhcC
Confidence 345555544433 33466777777666555554442 3334455566777777766543224444444455666777
Q ss_pred CCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCC
Q 014285 380 GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423 (427)
Q Consensus 380 ~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~ 423 (427)
|++.+.|+.+|-.-......-+ ----|.+|+..|.|-|...
T Consensus 153 ~~~eflDyvg~pigk~~~~s~p---~lPLiAipTTaGTgSEtT~ 193 (465)
T KOG3857|consen 153 GEGEFLDYVGPPIGKVKQSSKP---LLPLIAIPTTAGTGSETTR 193 (465)
T ss_pred CCccchhccCCccccccccccc---ccceEecccCCCcccccee
Confidence 7788888776433222222211 1123778899999887643
No 349
>PTZ00413 lipoate synthase; Provisional
Probab=40.43 E-value=4.3e+02 Score=27.19 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecc-C-Cc-----hhhHHHHHHHHHhCCCcEEEE---eCCCCCCHHHHHHHHHH--
Q 014285 202 AVSPAEASELASKYCKLGFSTLKLNVG-R-NI-----TADFDVLQAIHAVHPHCSFIL---DANEGYTSEEAVEVLGK-- 269 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKiG-~-~~-----~~d~~~l~~ir~~~~~~~L~v---DAN~~~s~~~A~~~l~~-- 269 (427)
..|+++..+.|+...+.|-+.+-+--| + |+ +.=.+.+++||+.-|++.+-+ |..+ +.+ +++.+..
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g--~~e-~l~~L~eAG 252 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHG--DLK-SVEKLANSP 252 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCcccc--CHH-HHHHHHhcC
Confidence 348899988888888889876655444 2 22 222445677777556544332 4433 333 3444333
Q ss_pred hhhCCCCCceEeCC---CC--CCChhhHHHHHHhhcc--------ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe---
Q 014285 270 LNDMGVIPVLFEQP---VH--RDDWSGLHDVSNFARD--------TYGISVVADESCRSLNDVQKVMQENLASVVNI--- 333 (427)
Q Consensus 270 L~~~~l~~~~iEqP---~~--~~d~~~~~~L~~~~r~--------~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l--- 333 (427)
++-|+..++-.|.= +. ..+|+..-++-+.+++ .+++=|-+||+...+.++..-|....+|++.+
T Consensus 253 ~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQY 332 (398)
T PTZ00413 253 LSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQY 332 (398)
T ss_pred CCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccc
Confidence 23333221222222 12 2356543333222221 23566678888777777655555566777766
Q ss_pred -CCCCc--c------HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 334 -KLAKF--G------VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 334 -k~~~~--G------i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
-|++- - ..+..++.+.|.+.|...+.++.+
T Consensus 333 L~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPl 371 (398)
T PTZ00413 333 LQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPL 371 (398)
T ss_pred cCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCc
Confidence 44432 1 345678888999999988877644
No 350
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=40.22 E-value=3.1e+02 Score=25.48 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEec--cC-CchhhHHHHHHHHHh--CCCcEEEEeCCCC-------CCHHHHHHHHHHhh
Q 014285 204 SPAEASELASKYCKLGFSTLKLNV--GR-NITADFDVLQAIHAV--HPHCSFILDANEG-------YTSEEAVEVLGKLN 271 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKi--G~-~~~~d~~~l~~ir~~--~~~~~L~vDAN~~-------~s~~~A~~~l~~L~ 271 (427)
+.+....++++..+.|-..+.+-+ |. +.++-++.++++++. .-++.+.+|..-. .+.++-.+.++...
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 445555667788889998885544 43 222334455666652 3467788865321 23433222245555
Q ss_pred hCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe--cCCCCCHHH----HHHHHHcCCC
Q 014285 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DESCRSLND----VQKVMQENLA 328 (427)
Q Consensus 272 ~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~--dE~~~~~~~----~~~ll~~~a~ 328 (427)
+.+.. ||=-+.. .+.+.++++++ ..++||.. +....+..+ ++++++.++-
T Consensus 154 ~~GaD--~Ik~~~~-~~~~~~~~i~~----~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 154 ELGAD--IVKTKYT-GDAESFKEVVE----GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HHCCC--EEEecCC-CCHHHHHHHHh----cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 55653 5555543 36888888886 46677754 334456554 5666776543
No 351
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=40.22 E-value=1.2e+02 Score=29.70 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.3
Q ss_pred ChhhHHHHHHhhccccCCeEE-ecC-CCCCHHHHHHHHHcCCCcEEEe
Q 014285 288 DWSGLHDVSNFARDTYGISVV-ADE-SCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa-~dE-~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+++.++++++ ...+||. .-| -+.++.++..+++.+ ++.+.+
T Consensus 191 ~~elL~ei~~----~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaV 233 (293)
T PRK04180 191 PYELVKEVAE----LGRLPVVNFAAGGIATPADAALMMQLG-ADGVFV 233 (293)
T ss_pred CHHHHHHHHH----hCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEE
Confidence 5788888876 4678985 223 466999999999976 455443
No 352
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=40.16 E-value=1.3e+02 Score=30.59 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCC-----chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRN-----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-----~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A 263 (427)
.+++++.+.++...+.|.+.|.+--|.+ ++.=.+.++.|++.+|++.+- + +..+.++.
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~--~-g~lt~e~l 166 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIE--V-QPLSEEEY 166 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceec--c-CCCCHHHH
Confidence 4789999999888899999998876743 333355667777777776553 3 34676664
No 353
>PRK07360 FO synthase subunit 2; Reviewed
Probab=40.13 E-value=89 Score=31.70 Aligned_cols=71 Identities=27% Similarity=0.345 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCch-----hhHHHHHHHHHhCCCcEEEE-eC--------CCCCCHHHHHHHHH
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNIT-----ADFDVLQAIHAVHPHCSFIL-DA--------NEGYTSEEAVEVLG 268 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~-----~d~~~l~~ir~~~~~~~L~v-DA--------N~~~s~~~A~~~l~ 268 (427)
.+++++.+.+++..+.|.+.|-+--|.++. .=.+.++.|++.+|++.+-. -+ +.+.+.++ .++
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e---~l~ 167 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE---VLK 167 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH---HHH
Confidence 378899999999999999999999764332 23456777777677655532 11 44555555 444
Q ss_pred HhhhCCCC
Q 014285 269 KLNDMGVI 276 (427)
Q Consensus 269 ~L~~~~l~ 276 (427)
+|.+.|+.
T Consensus 168 ~LkeAGld 175 (371)
T PRK07360 168 ALKDAGLD 175 (371)
T ss_pred HHHHcCCC
Confidence 55556654
No 354
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.10 E-value=4.1e+02 Score=26.86 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=72.3
Q ss_pred HHHHhhcCCcEEEEeccC--------CchhhHHHHHHHHHh----CC--CcEEEE------------eC---------CC
Q 014285 212 ASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HP--HCSFIL------------DA---------NE 256 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~~ir~~----~~--~~~L~v------------DA---------N~ 256 (427)
+.+.++.||+.+-+.... ++++.++..+.+.+. += +.+|-. |- ..
T Consensus 91 i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~ 170 (347)
T PRK09196 91 CQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQ 170 (347)
T ss_pred HHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhh
Confidence 445678999999998762 578888888777662 21 233311 11 12
Q ss_pred CC-CHHHHHHHHHHhh----------hCCCCCceEe--CCC-CCCChhhHHHHHHhhcccc-CCeEEecC-CCC------
Q 014285 257 GY-TSEEAVEVLGKLN----------DMGVIPVLFE--QPV-HRDDWSGLHDVSNFARDTY-GISVVADE-SCR------ 314 (427)
Q Consensus 257 ~~-s~~~A~~~l~~L~----------~~~l~~~~iE--qP~-~~~d~~~~~~L~~~~r~~~-~iPIa~dE-~~~------ 314 (427)
.| +|++|.+|+++.. -.|. |-. .|- +.-|++.++++.+ .+ ++|+.+.= |-.
T Consensus 171 ~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~---Yk~~~~p~~~~LdfdrL~eI~~----~v~~vPLVLHGgSG~~~~~~~ 243 (347)
T PRK09196 171 LLTDPEEAADFVKKTQVDALAIAIGTSHGA---YKFTRKPTGDVLAIDRIKEIHA----RLPNTHLVMHGSSSVPQELLD 243 (347)
T ss_pred cCCCHHHHHHHHHHhCcCeEhhhhccccCC---CCCCCCCChhhccHHHHHHHHh----cCCCCCEEEeCCCCCCHHHHH
Confidence 26 4999999998753 1332 332 342 1247888888875 56 69988754 433
Q ss_pred ---------------CHHHHHHHHHcCCCcEEEeCCC
Q 014285 315 ---------------SLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 315 ---------------~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
..++++++++.+ +.=||+...
T Consensus 244 ~~~~~g~~~~~~~G~~~e~i~~ai~~G-I~KINi~Td 279 (347)
T PRK09196 244 IINEYGGDMPETYGVPVEEIQEGIKHG-VRKVNIDTD 279 (347)
T ss_pred HHHHhcCCccccCCCCHHHHHHHHHCC-CceEEeChH
Confidence 446677777765 434555543
No 355
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=40.04 E-value=1.4e+02 Score=31.08 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHhhc--CCcEEEEec-cC---CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 203 VSPAEASELASKYCKL--GFSTLKLNV-GR---NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~--Gf~~iKlKi-G~---~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
.+++++.+.+++..+. +.+.+-+-- |- +++.+++.++.+++.+|++.+.|+.||...++.+.++++
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~ 131 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVD 131 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHH
Confidence 4788888877776543 445555543 32 345678999999998889999999999877655444333
No 356
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=39.81 E-value=1.2e+02 Score=30.80 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=50.8
Q ss_pred ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc---H----HHHHHHHHHHHHcCCcEEEc
Q 014285 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG---V----LGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G---i----~~~~~~~~~A~~~gi~~~~~ 360 (427)
.|+.+++|++ .++.||..-+ +.+.++.+++++.+ +|.|.+ +.+| + .....+.++++..+++++..
T Consensus 224 ~w~~i~~ir~----~~~~pviiKg-V~~~eda~~a~~~G-~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~~~~vi~d 295 (361)
T cd04736 224 NWQDLRWLRD----LWPHKLLVKG-IVTAEDAKRCIELG-ADGVIL--SNHGGRQLDDAIAPIEALAEIVAATYKPVLID 295 (361)
T ss_pred CHHHHHHHHH----hCCCCEEEec-CCCHHHHHHHHHCC-cCEEEE--CCCCcCCCcCCccHHHHHHHHHHHhCCeEEEe
Confidence 5778888875 6888998886 68999999999875 777544 3343 2 22445556666678999888
Q ss_pred ccCchhH
Q 014285 361 GMIETRL 367 (427)
Q Consensus 361 s~~es~i 367 (427)
+-+.++.
T Consensus 296 GGIr~g~ 302 (361)
T cd04736 296 SGIRRGS 302 (361)
T ss_pred CCCCCHH
Confidence 7665543
No 357
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=39.80 E-value=2e+02 Score=26.54 Aligned_cols=92 Identities=11% Similarity=0.157 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe----c--C-C-CCC--HHHHHHHHHcCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA----D--E-S-CRS--LNDVQKVMQENLA 328 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~----d--E-~-~~~--~~~~~~ll~~~a~ 328 (427)
+..+..+.++++.+.|.. .+| + +..+.++.+++ .+.+||.. | + . .++ ..+++.+.+.+ +
T Consensus 25 ~~~~i~~~a~~~~~~G~~--~~~--~--~~~~~~~~i~~----~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG-a 93 (219)
T cd04729 25 SPEIMAAMALAAVQGGAV--GIR--A--NGVEDIRAIRA----RVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG-A 93 (219)
T ss_pred cHHHHHHHHHHHHHCCCe--EEE--c--CCHHHHHHHHH----hCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC-C
Confidence 356677888888888874 455 2 44566666653 46788853 2 1 1 222 33667777765 6
Q ss_pred cEEEeCCCCcc-H--HHHHHHHHHHHHcC-CcEEEcc
Q 014285 329 SVVNIKLAKFG-V--LGTLQIIKATRKSG-LHLMIDG 361 (427)
Q Consensus 329 ~~i~lk~~~~G-i--~~~~~~~~~A~~~g-i~~~~~s 361 (427)
+++.++..... - ....++++.+++++ +.+.+..
T Consensus 94 d~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v 130 (219)
T cd04729 94 DIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI 130 (219)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC
Confidence 78888765432 1 14567787788887 8877654
No 358
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=39.64 E-value=4e+02 Score=26.60 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe-ccCCch---hh----HHHHHHHHHhCCCcEEEEeCCC--CCCHHHHHHHHHHhhh
Q 014285 203 VSPAEASELASKYCKLGFSTLKLN-VGRNIT---AD----FDVLQAIHAVHPHCSFILDANE--GYTSEEAVEVLGKLND 272 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK-iG~~~~---~d----~~~l~~ir~~~~~~~L~vDAN~--~~s~~~A~~~l~~L~~ 272 (427)
+||.+.... +..+.|-..+-++ .|.+.+ .. .+.++.|.+ .-++.|+||.-+ +=+++-...-++.++.
T Consensus 75 ~~p~~~Ak~--q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~e-avd~PL~Id~s~n~~kD~evleaale~~~g 151 (319)
T PRK04452 75 NDPAAWAKK--CVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQ-AVDVPLIIGGSGNPEKDAEVLEKVAEAAEG 151 (319)
T ss_pred cCHHHHHHH--HHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHH-hCCCCEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 455555432 2225687878887 444332 11 223444433 247889999543 5566555556666665
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHH---HHHHHcCCC--cEEEeCCCCc
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV---QKVMQENLA--SVVNIKLAKF 338 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~---~~ll~~~a~--~~i~lk~~~~ 338 (427)
.+. +=-+...++++.+..|+. +.+.|+..- +..+++.+ -..+....+ +=|.+||.-.
T Consensus 152 ~~p----LInSat~en~~~i~~lA~----~y~~~Vva~-s~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~ 213 (319)
T PRK04452 152 ERC----LLGSAEEDNYKKIAAAAM----AYGHAVIAW-SPLDINLAKQLNILLTELGVPRERIVMDPTTG 213 (319)
T ss_pred CCC----EEEECCHHHHHHHHHHHH----HhCCeEEEE-cHHHHHHHHHHHHHHHHcCCCHHHEEEeCCcc
Confidence 431 112233457888888886 577777541 11223322 233333334 5578888766
No 359
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.37 E-value=4.2e+02 Score=26.83 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEeC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQ 282 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iEq 282 (427)
|.+...+|+.++.++|-..+.+-+-. .++.+.++.|++.- .+.|..|-+ |++.-|++.++. .+...+.
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~~--~~~a~al~~I~~~~-~iPlvADIH--Fd~~lAl~a~~~G~~~iRIN------ 108 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVPD--MEAAAALPEIKKQL-PVPLVADIH--FDYRLALAAAEAGADALRIN------ 108 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccCC--HHHHHhHHHHHHcC-CCCEEEecC--CCHHHHHHHHHhCCCEEEEC------
Confidence 55666889999999999998887743 57788888888855 388888876 556666666665 4443332
Q ss_pred CCCCCCh----hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcE
Q 014285 283 PVHRDDW----SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 283 P~~~~d~----~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|+|+ +..+++.+.++ ..++||=.|=+.-++. +++++.. + +|+--+ +..+++-++++++.|..=
T Consensus 109 ---PGNig~~~~~v~~vv~~ak-~~~ipIRIGvN~GSL~--~~~~~~y--g----~~t~eamveSAl~~~~~le~~~f~~ 176 (360)
T PRK00366 109 ---PGNIGKRDERVREVVEAAK-DYGIPIRIGVNAGSLE--KDLLEKY--G----EPTPEALVESALRHAKILEELGFDD 176 (360)
T ss_pred ---CCCCCchHHHHHHHHHHHH-HCCCCEEEecCCccCh--HHHHHHc--C----CCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 3333 23444443332 5688888887766665 4555432 2 244457 777899999999998764
Q ss_pred EEcccCchh--HHHHHHHHHHh
Q 014285 358 MIDGMIETR--LATGFALHLAA 377 (427)
Q Consensus 358 ~~~s~~es~--ig~~a~~hlaa 377 (427)
.+=|+=.|+ ....|.-.++.
T Consensus 177 iviS~KsS~v~~~i~ayrlla~ 198 (360)
T PRK00366 177 IKISVKASDVQDLIAAYRLLAK 198 (360)
T ss_pred EEEEEEcCCHHHHHHHHHHHHh
Confidence 433322233 33444444543
No 360
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=38.99 E-value=4.6e+02 Score=27.07 Aligned_cols=154 Identities=13% Similarity=0.155 Sum_probs=81.7
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCc--hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNI--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (427)
+...+.++..+.++++.+.|.+.+++ |.+. ....+.++++++.++...+..|..-.=.+..-.+.+..+....+++
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie~--g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v 87 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIEA--GTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCI 87 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEEe--CCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEE
Confidence 34457888888899988999999964 5321 3456778888887776677777443322333233333332222321
Q ss_pred ceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCC-HHHHHHHHHcCCCcEEEeCCCCc----cHHHHHHHHHHHH
Q 014285 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRS-LNDVQKVMQENLASVVNIKLAKF----GVLGTLQIIKATR 351 (427)
Q Consensus 278 ~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~-~~~~~~ll~~~a~~~i~lk~~~~----Gi~~~~~~~~~A~ 351 (427)
.-|.+ ..+.....+.++ +.++++..+- +..+ ...++.+.+. .+|++.+.|... +......+-++.+
T Consensus 88 -~g~~~--~~~~~~~i~~a~----~~G~~~~~g~~s~~t~~e~~~~a~~~-GaD~I~~~pg~~~~~~~~~~~~~l~~l~~ 159 (430)
T PRK07028 88 -LGLAD--DSTIEDAVRAAR----KYGVRLMADLINVPDPVKRAVELEEL-GVDYINVHVGIDQQMLGKDPLELLKEVSE 159 (430)
T ss_pred -ecCCC--hHHHHHHHHHHH----HcCCEEEEEecCCCCHHHHHHHHHhc-CCCEEEEEeccchhhcCCChHHHHHHHHh
Confidence 11211 001222333332 4677776652 3333 3334555544 589998776532 1111123333344
Q ss_pred HcCCcEEEcccC
Q 014285 352 KSGLHLMIDGMI 363 (427)
Q Consensus 352 ~~gi~~~~~s~~ 363 (427)
..++++++++-+
T Consensus 160 ~~~iPI~a~GGI 171 (430)
T PRK07028 160 EVSIPIAVAGGL 171 (430)
T ss_pred hCCCcEEEECCC
Confidence 567888877633
No 361
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=38.94 E-value=3.3e+02 Score=27.47 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=76.4
Q ss_pred HHHHHHhhcC-----------CcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E------------eCCCCC
Q 014285 210 ELASKYCKLG-----------FSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L------------DANEGY 258 (427)
Q Consensus 210 ~~~~~~~~~G-----------f~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v------------DAN~~~ 258 (427)
+.+++.++.| |+.+-+.... ++++.+++.+.+.+. += +.+|- | |.+..|
T Consensus 101 e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~y 180 (340)
T cd00453 101 PWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALY 180 (340)
T ss_pred HHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccC
Confidence 4456678999 9998888764 788888888877652 10 12221 1 122336
Q ss_pred -CHHHHHHHHHHhhh----------CC-CCCceEe-CCCCCCChhhHHHHHHhhccc-----cCCeEEec-CCCCCHHHH
Q 014285 259 -TSEEAVEVLGKLND----------MG-VIPVLFE-QPVHRDDWSGLHDVSNFARDT-----YGISVVAD-ESCRSLNDV 319 (427)
Q Consensus 259 -s~~~A~~~l~~L~~----------~~-l~~~~iE-qP~~~~d~~~~~~L~~~~r~~-----~~iPIa~d-E~~~~~~~~ 319 (427)
+|++|.+|.++... +| .|=.|-. +| .-|++-++++.+.+..+ .++|+.+. =|-...+++
T Consensus 181 T~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p--~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~ 258 (340)
T cd00453 181 TQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNV--VLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEI 258 (340)
T ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCC--ccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHH
Confidence 49999999998771 10 1111333 33 34788888887632111 16787665 466677788
Q ss_pred HHHHHcCCCcEEEeCCC
Q 014285 320 QKVMQENLASVVNIKLA 336 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk~~ 336 (427)
+++++.+ +.=+|++..
T Consensus 259 ~~ai~~G-i~KiNi~Te 274 (340)
T cd00453 259 KDSVSYG-VVKMNIDTD 274 (340)
T ss_pred HHHHHcC-CeEEEcccH
Confidence 8888776 444666654
No 362
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=38.89 E-value=1.8e+02 Score=31.16 Aligned_cols=99 Identities=16% Similarity=0.294 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeC--CC-CCCChhhHHHHHHhhcccc-CCeEEe-c----CCC--CCHHHHHHHHHc
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTY-GISVVA-D----ESC--RSLNDVQKVMQE 325 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--P~-~~~d~~~~~~L~~~~r~~~-~iPIa~-d----E~~--~~~~~~~~ll~~ 325 (427)
.|+.++-+++++.|.++|++ +||= |. .+.|.+.++++++. .. ...|+. . +.+ .....++.+++.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd--~IE~G~p~~s~~d~~~v~~i~~~---~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~ 93 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIH--YIEGGWPGANPKDVQFFWQLKEM---NFKNAKIVAFCSTRRPHKKVEEDKMLQALIKA 93 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHHh---CCCCcEEEEEeeecCCCCCCchHHHHHHHhcC
Confidence 57999999999999999986 9998 55 35667777777641 11 233432 1 111 122345666665
Q ss_pred CCCcEEEe-----------CCCC--cc-HHHHHHHHHHHHHcCCcEEEcc
Q 014285 326 NLASVVNI-----------KLAK--FG-VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 326 ~a~~~i~l-----------k~~~--~G-i~~~~~~~~~A~~~gi~~~~~s 361 (427)
+. +.+.+ +..+ -- +....+.+++|+++|..+....
T Consensus 94 ~~-~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~ 142 (526)
T TIGR00977 94 ET-PVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDA 142 (526)
T ss_pred CC-CEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 43 33433 1111 12 4445677999999999986544
No 363
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=38.74 E-value=2.6e+02 Score=26.93 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=48.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
-.+.||.. ..+++.+.+..+.+.+.+++ |++-|+.-... + ++ ..+-..++.++. .....++.+++...
T Consensus 83 g~~vid~s-t~~p~~~~~~~~~~~~~g~~--~vdaPv~Gg~~-~-a~------~g~l~~~~gg~~-~~~~~~~~~l~~~g 150 (288)
T TIGR01692 83 GSLLIDCS-TIDPDSARKLAELAAAHGAV--FMDAPVSGGVG-G-AR------AGTLTFMVGGVA-EEFAAAEPVLGPMG 150 (288)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHHHcCCc--EEECCCCCCHH-H-Hh------hCcEEEEECCCH-HHHHHHHHHHHHhc
Confidence 36889998 77899999999999988875 99999975431 1 11 122223344432 23445577777655
Q ss_pred CcEEEeCC
Q 014285 328 ASVVNIKL 335 (427)
Q Consensus 328 ~~~i~lk~ 335 (427)
-.++.+.+
T Consensus 151 ~~~~~~g~ 158 (288)
T TIGR01692 151 RNIVHCGD 158 (288)
T ss_pred CCeEeeCC
Confidence 55666655
No 364
>PRK06256 biotin synthase; Validated
Probab=38.71 E-value=4e+02 Score=26.31 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHhhcCCcEEEEec------------cCCchhhHHHHHHHHHhCC--CcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 212 ASKYCKLGFSTLKLNV------------GRNITADFDVLQAIHAVHP--HCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKi------------G~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
++.+.+.|.+.+-+.+ +.++++-++.++.+++.|- ...+++-. +-+.++..+.+..+.+++.
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl--gEt~ed~~~~~~~l~~l~~ 230 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM--GESLEDRVEHAFFLKELDA 230 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC--CCCHHHHHHHHHHHHhCCC
Confidence 3445566776654422 1233444556666666541 22344433 3466666666666665543
No 365
>PRK07695 transcriptional regulator TenI; Provisional
Probab=38.42 E-value=3.1e+02 Score=24.90 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC-------------CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~-------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
+.+++.+.++++.+.|....++=+.. .+..+...++.+|+.+|+..+.+.++ +.+++.+..
T Consensus 39 ~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~~~~~~~~~~r~~~~~~~ig~s~~---s~e~a~~a~--- 112 (201)
T PRK07695 39 SAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLGYRSFSVRSVREKFPYLHVGYSVH---SLEEAIQAE--- 112 (201)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeCcccCCHHHHHHhCCCCEEEEeCC---CHHHHHHHH---
Confidence 45555566666666554433333321 11111123566777667777888654 667654433
Q ss_pred hhCCCCCceE------eCC----CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 271 NDMGVIPVLF------EQP----VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 271 ~~~~l~~~~i------EqP----~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+.+.. |+ +.. .+...++.++++++ .+++||..-=-+ +..++.++++.+ ++.+.+
T Consensus 113 -~~Gad--yi~~g~v~~t~~k~~~~~~g~~~l~~~~~----~~~ipvia~GGI-~~~~~~~~~~~G-a~gvav 176 (201)
T PRK07695 113 -KNGAD--YVVYGHVFPTDCKKGVPARGLEELSDIAR----ALSIPVIAIGGI-TPENTRDVLAAG-VSGIAV 176 (201)
T ss_pred -HcCCC--EEEECCCCCCCCCCCCCCCCHHHHHHHHH----hCCCCEEEEcCC-CHHHHHHHHHcC-CCEEEE
Confidence 33332 22 111 12224555666654 456777543333 677777777765 555543
No 366
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.13 E-value=3.8e+02 Score=25.91 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEe
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~ 309 (427)
.++++...++++.+.+.+.+...+-+-+-.-....+.++.+.++++.+ +||..
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~ 198 (274)
T cd07938 145 EVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLAL 198 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEE
Confidence 567888888888888877664566666655455555555554444442 55544
No 367
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=38.09 E-value=3.7e+02 Score=25.83 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=44.1
Q ss_pred chhhHHHHHHHHHhCCCcEEEEeCC-CCC--CHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 231 ITADFDVLQAIHAVHPHCSFILDAN-EGY--TSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 231 ~~~d~~~l~~ir~~~~~~~L~vDAN-~~~--s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+++=+..+++|++.-+..-+.+|.. ++| +++++.+...++-+ .+..-..||.-- +..+-.+.++ +.++|
T Consensus 57 l~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~--~~~~~I~al~-----~agip 129 (254)
T cd06557 57 LDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGA--EVAETIRALV-----DAGIP 129 (254)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcH--HHHHHHHHHH-----HcCCC
Confidence 4455666677776544444789997 777 48998887665543 665444788841 1223334443 46889
Q ss_pred EEe
Q 014285 307 VVA 309 (427)
Q Consensus 307 Ia~ 309 (427)
++.
T Consensus 130 V~g 132 (254)
T cd06557 130 VMG 132 (254)
T ss_pred eec
Confidence 883
No 368
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=37.85 E-value=94 Score=31.24 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCch----hhHHHHHHHHHhCCCcEEEE---------eCCCCCCHHHHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNIT----ADFDVLQAIHAVHPHCSFIL---------DANEGYTSEEAVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~----~d~~~l~~ir~~~~~~~L~v---------DAN~~~s~~~A~~~l~ 268 (427)
+++++.+.+++..+.|.+.+=+--|.+++ .=.+.++.|++.+|++.+-. ....+.+.++.++.++
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78999999988888999988888665443 33567788888888776642 1234555555444444
No 369
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=37.64 E-value=1.2e+02 Score=29.87 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCc----hhhHHHHHHHHHhCCCcEEE
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFI 251 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~----~~d~~~l~~ir~~~~~~~L~ 251 (427)
.+++++.+.++...+.|++.|-+--|.++ +.=.+.++.|++.++++.+.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 47889988888888899999988755433 22256778888877776654
No 370
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=37.49 E-value=1.6e+02 Score=29.45 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCc----hhhHHHHHHHHHhCCCcEEEE
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFIL 252 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~----~~d~~~l~~ir~~~~~~~L~v 252 (427)
.+++++.+.++...+.|.+.|-+--|.++ +.=.+.++.|++.+|++.+..
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~ 123 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHA 123 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEe
Confidence 37899999999998999999999866432 223566788888888776543
No 371
>PLN02979 glycolate oxidase
Probab=37.23 E-value=4.7e+02 Score=26.68 Aligned_cols=76 Identities=8% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC---c-c-HHHHHHHHHHHHH--cCCcEE
Q 014285 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK---F-G-VLGTLQIIKATRK--SGLHLM 358 (427)
Q Consensus 286 ~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~---~-G-i~~~~~~~~~A~~--~gi~~~ 358 (427)
.-+|+.++.|++ .+++||..-|- .+.++.+++++.+ +|.|++.-.- . + .+...-+.+++++ ..++++
T Consensus 209 ~ltW~dl~wlr~----~~~~PvivKgV-~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 209 TLSWKDVQWLQT----ITKLPILVKGV-LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred CCCHHHHHHHHh----ccCCCEEeecC-CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 346888998875 78999999886 5788999998876 8887665431 1 1 2222233334444 348888
Q ss_pred EcccCchhH
Q 014285 359 IDGMIETRL 367 (427)
Q Consensus 359 ~~s~~es~i 367 (427)
..+-+.++.
T Consensus 283 ~dGGIr~G~ 291 (366)
T PLN02979 283 LDGGVRRGT 291 (366)
T ss_pred EeCCcCcHH
Confidence 888665544
No 372
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=37.13 E-value=1.3e+02 Score=28.97 Aligned_cols=94 Identities=12% Similarity=0.240 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHhhhCC---CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 258 YTSEEAVEVLGKLNDMG---VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~---l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
+++.+ +++..+++| + +..-|++.-.+.++.++.+++ .+.+||-.-+-+++..++...-..+ .|.|.+=
T Consensus 66 ~dp~~---ia~~Ye~~GAa~i-SVLTd~~~F~Gs~e~L~~v~~----~v~~PvL~KDFiiD~yQI~~Ar~~G-ADavLLI 136 (254)
T COG0134 66 FDPVE---IAKAYEEGGAAAI-SVLTDPKYFQGSFEDLRAVRA----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLI 136 (254)
T ss_pred CCHHH---HHHHHHHhCCeEE-EEecCccccCCCHHHHHHHHH----hcCCCeeeccCCCCHHHHHHHHHcC-cccHHHH
Confidence 45555 444444443 3 235577777889999988865 7899999999999999987766554 6776665
Q ss_pred CCCccHHHHHHHHHHHHHcCCcEEEc
Q 014285 335 LAKFGVLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (427)
...++=....++.+.|+..|+.+.+-
T Consensus 137 ~~~L~~~~l~el~~~A~~LGm~~LVE 162 (254)
T COG0134 137 VAALDDEQLEELVDRAHELGMEVLVE 162 (254)
T ss_pred HHhcCHHHHHHHHHHHHHcCCeeEEE
Confidence 55555556789999999999998654
No 373
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=36.80 E-value=2.4e+02 Score=25.66 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=43.4
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-H-------HHHHHHHHHHHHcCCcEEEcccCch
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V-------LGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i-------~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
+.|+.|++|.--.+..++..+.. -.+++|-+|.+.+- + .-...+..+|+..|+.++..+ +|+
T Consensus 143 ~~G~~l~ld~~g~~~~~~~~l~~-~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g-Ve~ 212 (240)
T cd01948 143 ALGVRIALDDFGTGYSSLSYLKR-LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG-VET 212 (240)
T ss_pred HCCCeEEEeCCCCcHhhHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe-cCC
Confidence 35677888876666666655444 45899988876542 2 234568899999999999887 355
No 374
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.77 E-value=43 Score=31.91 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=34.6
Q ss_pred CHHHHHHHHHcCCCcEEEeCCCCcc---HHH---HHHHHHHHHHcCCcEEEccc
Q 014285 315 SLNDVQKVMQENLASVVNIKLAKFG---VLG---TLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 315 ~~~~~~~ll~~~a~~~i~lk~~~~G---i~~---~~~~~~~A~~~gi~~~~~s~ 362 (427)
++..++++++.-+.-+=.+|.++ | +.+ .++.+++|++|||.+.+++.
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~-Gt~~l~~~~~l~eki~la~~~~V~v~~GGt 62 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGW-GTSALIDRDIVKEKIEMYKDYGIKVYPGGT 62 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecC-ceEeeccHHHHHHHHHHHHHcCCeEeCCcc
Confidence 67778888876444333456655 3 444 78999999999999999973
No 375
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=36.01 E-value=5.3e+02 Score=26.96 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=77.3
Q ss_pred HHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCC
Q 014285 210 ELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVH--PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~--~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~ 286 (427)
+.+++..+.|-+.|.++.-. +.++-.+.++.+++.. .++.|.|+-+ .+.+.++.-+|+| +.+
T Consensus 221 ~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~--------~dlAl~~gAdGVH-------LGQ 285 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDY--------WQLAIKHQAYGVH-------LGQ 285 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECH--------HHHHHHcCCCEEE-------cCh
Confidence 35777889999999998743 2222233445555532 3677877642 3444556666777 222
Q ss_pred CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC----------CC-ccHHHHHHHHHHHHH---
Q 014285 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL----------AK-FGVLGTLQIIKATRK--- 352 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~----------~~-~Gi~~~~~~~~~A~~--- 352 (427)
+|+.. ..+++ ..+--..+|=|+++.+++.++.+. .+||+.+-| .. .|+....++.+++..
T Consensus 286 eDL~~-~~aR~----ilg~~~iIGvStHs~eEl~~A~~~-gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~ 359 (437)
T PRK12290 286 EDLEE-ANLAQ----LTDAGIRLGLSTHGYYELLRIVQI-QPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPY 359 (437)
T ss_pred HHcch-hhhhh----hcCCCCEEEEecCCHHHHHHHhhc-CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccc
Confidence 33221 22221 122223456689999998877765 589998632 12 366666666666543
Q ss_pred ---cCCcEE-EcccCch
Q 014285 353 ---SGLHLM-IDGMIET 365 (427)
Q Consensus 353 ---~gi~~~-~~s~~es 365 (427)
.++|++ +|+....
T Consensus 360 ~~~~~iPVVAIGGI~~~ 376 (437)
T PRK12290 360 QGQTGFPTVAIGGIDQS 376 (437)
T ss_pred cccCCCCEEEECCcCHH
Confidence 478865 5554333
No 376
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=35.68 E-value=37 Score=22.87 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=20.3
Q ss_pred HHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC
Q 014285 211 LASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH 245 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~ 245 (427)
.++.+..+||..++.-.|.....+.+..+.+|..|
T Consensus 3 ~a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~AF 37 (41)
T PF11590_consen 3 TAERLRSAGFATIGSGAGLPSSEEEETRQKLRRAF 37 (41)
T ss_dssp HHHHHHHTT-EEECTTS------HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccCccccchhhHHHHHHHHHHH
Confidence 35566789999998888876666677777777543
No 377
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=35.36 E-value=4.2e+02 Score=25.55 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+.+ +.+++.+.+= =++.+.++++++++..++.+..
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~g-v~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAG-VGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE-EESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEec-CcchhHHHHHHHHHHHhhcCce
Confidence 56777888999999998887665421 22333445666666 4567777763 3445899999999999998876
Q ss_pred CceEeCCCCC-CCh----hhHHHHHHhhccccCCeEEecCC------CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHH
Q 014285 277 PVLFEQPVHR-DDW----SGLHDVSNFARDTYGISVVADES------CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTL 344 (427)
Q Consensus 277 ~~~iEqP~~~-~d~----~~~~~L~~~~r~~~~iPIa~dE~------~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~ 344 (427)
-..+--|... -+- +-++++++ .+++||..--. ..+.+.+.++.+ .++++-+|-+- | +....
T Consensus 99 ~v~v~~P~~~~~s~~~l~~y~~~ia~----~~~~pi~iYn~P~~tg~~ls~~~l~~L~~--~~nv~giK~s~-~~~~~~~ 171 (289)
T PF00701_consen 99 AVLVIPPYYFKPSQEELIDYFRAIAD----ATDLPIIIYNNPARTGNDLSPETLARLAK--IPNVVGIKDSS-GDLERLI 171 (289)
T ss_dssp EEEEEESTSSSCCHHHHHHHHHHHHH----HSSSEEEEEEBHHHHSSTSHHHHHHHHHT--STTEEEEEESS-SBHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHh----hcCCCEEEEECCCccccCCCHHHHHHHhc--CCcEEEEEcCc-hhHHHHH
Confidence 4456777631 122 23445553 68899986432 234555677776 57899999755 5 65555
Q ss_pred HHHHHHHHcCCcEEEc
Q 014285 345 QIIKATRKSGLHLMID 360 (427)
Q Consensus 345 ~~~~~A~~~gi~~~~~ 360 (427)
++.+.. ..++.++.+
T Consensus 172 ~~~~~~-~~~~~v~~G 186 (289)
T PF00701_consen 172 QLLRAV-GPDFSVFCG 186 (289)
T ss_dssp HHHHHS-STTSEEEES
T ss_pred HHhhhc-ccCeeeecc
Confidence 544322 245666655
No 378
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.35 E-value=73 Score=32.84 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhCCCCCceEeCCCCC----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 261 EEAVEVLGKLNDMGVIPVLFEQPVHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqP~~~----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
++-..+++..++ +....|+|-|..| -|++.++++++ +-++.|..|+...++ -+.+.+..+ +|++.--.+
T Consensus 150 ~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~----~~g~~vvVDnTf~~p-~~~~pL~lG-ADIV~hSaT 222 (409)
T KOG0053|consen 150 DDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAH----KYGFLVVVDNTFGSP-YNQDPLPLG-ADIVVHSAT 222 (409)
T ss_pred hhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHh----hCCCEEEEeCCcCcc-cccChhhcC-CCEEEEeee
Confidence 333445555555 3334699999864 57888888886 689999999999887 345566554 787776555
Q ss_pred C
Q 014285 337 K 337 (427)
Q Consensus 337 ~ 337 (427)
|
T Consensus 223 K 223 (409)
T KOG0053|consen 223 K 223 (409)
T ss_pred e
Confidence 5
No 379
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=35.03 E-value=2.7e+02 Score=26.32 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCcEEEEeccCC--chhhHHHHHHHHHhCCCcEEEEeCCCC-CCHHHHHHHHH
Q 014285 208 ASELASKYCKLGFSTLKLNVGRN--ITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAVEVLG 268 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~~--~~~d~~~l~~ir~~~~~~~L~vDAN~~-~s~~~A~~~l~ 268 (427)
..+.++.+.+.|...+.++.+.. ...|++.++.+++..+++. |=+||+ +|.++|.++++
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ip--IIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKI--IIGNNSIDDIESAKEMLK 211 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCc--EEEECCcCCHHHHHHHHH
Confidence 34444555556666665553321 1135556666665432222 223443 45666666654
No 380
>PRK08444 hypothetical protein; Provisional
Probab=34.95 E-value=1.9e+02 Score=29.28 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc----hhhHHHHHHHHHhCCCcEEE
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFI 251 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~----~~d~~~l~~ir~~~~~~~L~ 251 (427)
+++++.+.+++..+.|.+.|=+--|.++ +.=.+.++.|++.+|++.+-
T Consensus 81 s~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~ 132 (353)
T PRK08444 81 SHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVK 132 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEe
Confidence 7899999999999999999999887433 33356778888878875553
No 381
>PRK05481 lipoyl synthase; Provisional
Probab=34.88 E-value=4.4e+02 Score=25.68 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccC--Cc-----hhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHhhhCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGR--NI-----TADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~--~~-----~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~~~ 274 (427)
.+++++.+.++++.+.|++-+-+=-|. |. +.=.++++.|++..|++.+++ +++..-..++.+++.++-.+.
T Consensus 80 ~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i- 158 (289)
T PRK05481 80 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDV- 158 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcce-
Confidence 478999999999999999988887653 11 122345677777677776653 332222234444443332111
Q ss_pred CCCceEeCCC--------CCCChhhHHHHHHhhccc-------cCCeEEecCCCCCHHHHHHHHHcCCCcEEEe----CC
Q 014285 275 VIPVLFEQPV--------HRDDWSGLHDVSNFARDT-------YGISVVADESCRSLNDVQKVMQENLASVVNI----KL 335 (427)
Q Consensus 275 l~~~~iEqP~--------~~~d~~~~~~L~~~~r~~-------~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l----k~ 335 (427)
+. +.=+|. +...++.+.++.+.+++. +++=+..+|+.-...+....++...++.+.+ .|
T Consensus 159 ~~--~~~ets~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~p 236 (289)
T PRK05481 159 FN--HNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQP 236 (289)
T ss_pred ee--ccccChHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCC
Confidence 11 111232 123444444443333322 2333444565555555556666666776665 11
Q ss_pred C----Cc-c---HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 336 A----KF-G---VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 336 ~----~~-G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
+ .+ . -....++..++.+.|+..+.++.+
T Consensus 237 a~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~ 272 (289)
T PRK05481 237 SRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPL 272 (289)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCc
Confidence 1 22 2 345678888999999987776644
No 382
>PRK05443 polyphosphate kinase; Provisional
Probab=34.80 E-value=1e+02 Score=34.26 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=53.0
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH---hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA---VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~---~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|..|.+.+.+.+++. +.--.++.+|+.. -+..|-..++++.+ .|-++++.|+....|+.+..+.+.+.|++.|++
T Consensus 346 PY~SF~~~~~~i~~A-a~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~ 424 (691)
T PRK05443 346 PYESFDPVVEFLRQA-AADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVH 424 (691)
T ss_pred CccCchHHHHHHHHh-ccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCE
Confidence 556676666665554 2333444455432 13345666666665 488999999999999998889999999999987
Q ss_pred C
Q 014285 277 P 277 (427)
Q Consensus 277 ~ 277 (427)
+
T Consensus 425 V 425 (691)
T PRK05443 425 V 425 (691)
T ss_pred E
Confidence 4
No 383
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=34.71 E-value=4.9e+02 Score=26.18 Aligned_cols=149 Identities=14% Similarity=0.074 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHhhcC-CcEEEEeccCC----chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCC-
Q 014285 203 VSPAEASELASKYCKLG-FSTLKLNVGRN----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGV- 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~G-f~~iKlKiG~~----~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l- 275 (427)
.+++++.+.|++..+.| ++..-+--|.+ +++=.+.++.|++..+ +++.+=. |-++.+++.++.++ +..|+.
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~-le~c~sl-G~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG-LEVCASL-GMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC-cHHhhcc-CCCCHHHHHHHHHcChhheecc
Confidence 47888999999999999 55555555553 3333444555554221 3333222 46788887766554 444442
Q ss_pred ---CCceEeCCCCCCChhhHHHHHHhhcc-----ccCCeEEecCCCCCHHHHHHHH-HcCCCcEEE-----eCC-CC---
Q 014285 276 ---IPVLFEQPVHRDDWSGLHDVSNFARD-----TYGISVVADESCRSLNDVQKVM-QENLASVVN-----IKL-AK--- 337 (427)
Q Consensus 276 ---~~~~iEqP~~~~d~~~~~~L~~~~r~-----~~~iPIa~dE~~~~~~~~~~ll-~~~a~~~i~-----lk~-~~--- 337 (427)
...+++.=++...|++--.-.+.+++ -++.=+-++|+....-++...| +...++.|- +-+ +.
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335)
T ss_pred cccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCcccc
Confidence 12456666666666643322222221 2456678899888755543333 333255433 222 11
Q ss_pred --cc-HHHHHHHHHHHHHc
Q 014285 338 --FG-VLGTLQIIKATRKS 353 (427)
Q Consensus 338 --~G-i~~~~~~~~~A~~~ 353 (427)
-. ..+.++++++++-.
T Consensus 242 ~~~~~~~e~lk~IA~~Ri~ 260 (335)
T COG0502 242 AKPLDPFEFLKTIAVARII 260 (335)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 12 66789999999865
No 384
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=34.45 E-value=1.8e+02 Score=23.43 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCcEE--EEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCC
Q 014285 235 FDVLQAIHAVHPHCSF--ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312 (427)
Q Consensus 235 ~~~l~~ir~~~~~~~L--~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~ 312 (427)
-..++.+++..++.++ .+|-+ ++.+.++ .+.+++. .+ .+++++-+- ....+=+.....
T Consensus 13 ~~~~~~~~~~~~~~~v~~v~d~~----~~~~~~~---~~~~~~~--~~------~~~~~ll~~-----~~~D~V~I~tp~ 72 (120)
T PF01408_consen 13 RRHLRALLRSSPDFEVVAVCDPD----PERAEAF---AEKYGIP--VY------TDLEELLAD-----EDVDAVIIATPP 72 (120)
T ss_dssp HHHHHHHHHTTTTEEEEEEECSS----HHHHHHH---HHHTTSE--EE------SSHHHHHHH-----TTESEEEEESSG
T ss_pred HHHHHHHHhcCCCcEEEEEEeCC----HHHHHHH---HHHhccc--ch------hHHHHHHHh-----hcCCEEEEecCC
Confidence 3446666766566554 34554 3444433 3344432 11 234433321 124443333333
Q ss_pred CCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEc
Q 014285 313 CRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 313 ~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (427)
-.....+..+++.+. +++.=||.-.-..++.++.++|+++|..++++
T Consensus 73 ~~h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 73 SSHAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp GGHHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred cchHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 344455688888764 88888998777999999999999999999875
No 385
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.15 E-value=4.4e+02 Score=25.46 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC------CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+++.|.+.+=+--.. ..++=.+.++.+++. .+++.+.+=+.. -+.+++++.++..++.|..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHHHHHHHcCCC
Confidence 56777888999999999887764321 233444556767764 455777654443 4789999999999998865
Q ss_pred CceEeCCCC--CCC---hhhHHHHHHhhccccCCeEEecCC------CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHH
Q 014285 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADES------CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTL 344 (427)
Q Consensus 277 ~~~iEqP~~--~~d---~~~~~~L~~~~r~~~~iPIa~dE~------~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~ 344 (427)
-..+=-|.- ..+ ++-++++++ .+++||.+=.. ..+.+.++++. ..++++-+|-+- | +....
T Consensus 99 ~v~~~pP~~~~~~~~~i~~~~~~ia~----~~~~pv~lYn~P~~~g~~l~~~~~~~L~--~~p~v~giK~s~-~d~~~~~ 171 (292)
T PRK03170 99 GALVVTPYYNKPTQEGLYQHFKAIAE----ATDLPIILYNVPGRTGVDILPETVARLA--EHPNIVGIKEAT-GDLERVS 171 (292)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHh----cCCCCEEEEECccccCCCCCHHHHHHHH--cCCCEEEEEECC-CCHHHHH
Confidence 345555542 111 223455554 57888876531 23455667774 347888888654 4 55555
Q ss_pred HHH
Q 014285 345 QII 347 (427)
Q Consensus 345 ~~~ 347 (427)
++.
T Consensus 172 ~~~ 174 (292)
T PRK03170 172 ELI 174 (292)
T ss_pred HHH
Confidence 543
No 386
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.03 E-value=1.9e+02 Score=23.51 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=48.8
Q ss_pred hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHc--CCcEEEcccC
Q 014285 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS--GLHLMIDGMI 363 (427)
Q Consensus 291 ~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~--gi~~~~~s~~ 363 (427)
++.-++..+++ .+.-+..=.......++.+.+....+|++-+-..... ...+.++++.+++. ++.+++++..
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 34444444432 3555532222334577877777789999999875555 88899999998887 8889998864
No 387
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=33.98 E-value=2.9e+02 Score=26.35 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=41.4
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcccC
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
+.+..+-+.+++.+++||+.|= .+..-++..++.+ .++|+ +.+..... .+++.++.++|.++++-.+-
T Consensus 62 ~rl~~~v~~l~~~~~~piSIDT--~~~~v~~aaL~~g-~~iIN-dis~~~~~--~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 62 ERVIPVLRALAGEPDVPISVDT--FNAEVAEAALKAG-ADIIN-DVSGGRGD--PEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHHHHHHhcCCCeEEEeC--CcHHHHHHHHHhC-CCEEE-eCCCCCCC--hHHHHHHHHcCCCEEEECcC
Confidence 3344433333345689999873 3555678888876 55543 33221111 56788899999998875543
No 388
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=33.74 E-value=1.4e+02 Score=30.12 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=39.8
Q ss_pred ccCCeEEecC-CCCC-----HHH--------HHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRS-----LND--------VQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~-----~~~--------~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+ .+. +++.++. .++.+.+|-|..= +..+++++++|+++|+.+-
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~-GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVE 158 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEP-LFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLE 158 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccC-CCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 6789999864 3334 222 2222233 4888999999873 7779999999999999884
No 389
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=33.71 E-value=5.2e+02 Score=26.18 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=85.1
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (427)
++.+...++..+ +..+.++++++.|-..+-+.+-. +-+.-++.++.||+.+|++.+++ ..--|.+.|.++++.=.
T Consensus 96 ~l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~via--GNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 96 RLLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIA--GNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp CBCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEE--EEE-SHHHHHHHHHTT-
T ss_pred cceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEe--cccCCHHHHHHHHHcCC
Confidence 444455555433 23556777888999999888754 44666788999999999888873 33557787777666422
Q ss_pred h---CCCCC--ceEeCCC---CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc
Q 014285 272 D---MGVIP--VLFEQPV---HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 272 ~---~~l~~--~~iEqP~---~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G 339 (427)
+ .++-+ ...=+.+ -..++....+.++.+ ++.++||.+|=-+.+..|+-++|..+ .|.+.+--..-|
T Consensus 172 d~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a-~~~~v~iIADGGi~~sGDi~KAla~G-Ad~VMlG~llAg 245 (352)
T PF00478_consen 172 DAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAA-RDYGVPIIADGGIRTSGDIVKALAAG-ADAVMLGSLLAG 245 (352)
T ss_dssp SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHH-HCTTSEEEEESS-SSHHHHHHHHHTT--SEEEESTTTTT
T ss_pred CEEEEeccCCcccccccccccCCcHHHHHHHHHHHh-hhccCceeecCCcCcccceeeeeeec-ccceeechhhcc
Confidence 2 11100 0000000 011444444444432 35799999999999999999999876 788887655544
No 390
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=33.63 E-value=5.6e+02 Score=26.58 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCC--CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHP--HCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~--~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (427)
...+++..+.|...|.+-=.- |+..=...++++++.|. +..+.-+-.-.-|.+.-.++++.|.+.++++
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DS 172 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDS 172 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCE
Confidence 445566666676666553221 21111123444444443 3344455555556666666666666666553
No 391
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.42 E-value=5.2e+02 Score=26.09 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (427)
+.++..+.++.+.+.|+..|-+-.-...++|.+.++.+.+..+..++..=+ ....++ ++++.+.++....+--|
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~--r~~~~d----i~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLA--RALKKD----IDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEc--ccCHHH----HHHHHHcCcCEEEEEEc
Confidence 567777888888888998887633223467788888888866555554222 122333 23333334331123334
Q ss_pred CCCC------------ChhhHHHHHHhhccccCCeEEec-C--CCCCHHHH----HHHHHcCCCcEEEeCCCCcc---HH
Q 014285 284 VHRD------------DWSGLHDVSNFARDTYGISVVAD-E--SCRSLNDV----QKVMQENLASVVNIKLAKFG---VL 341 (427)
Q Consensus 284 ~~~~------------d~~~~~~L~~~~r~~~~iPIa~d-E--~~~~~~~~----~~ll~~~a~~~i~lk~~~~G---i~ 341 (427)
+..- .++.+.+..+.++ +.+..+... | +-.+...+ +.+.+.+ ++.|.+.=+. | ..
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g-~~~i~l~DT~-G~~~P~ 170 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAK-EHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG-ADRINIADTV-GVLTPQ 170 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC-CCEEEEeCCC-CccCHH
Confidence 3211 1222222222222 345444443 3 22333333 3334444 5666554333 5 34
Q ss_pred HHHHHHHHHHH-cCCcEEEcccCchhHHHH
Q 014285 342 GTLQIIKATRK-SGLHLMIDGMIETRLATG 370 (427)
Q Consensus 342 ~~~~~~~~A~~-~gi~~~~~s~~es~ig~~ 370 (427)
+..++++..++ .++++.+|+-...+++.+
T Consensus 171 ~v~~li~~l~~~~~~~l~~H~Hnd~GlA~A 200 (363)
T TIGR02090 171 KMEELIKKLKENVKLPISVHCHNDFGLATA 200 (363)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCChHHH
Confidence 55666655543 467788887655555554
No 392
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=33.24 E-value=4.7e+02 Score=25.50 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=49.7
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeC----CCC---C-------CChhhHHHHHHhhcccc
Q 014285 238 LQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ----PVH---R-------DDWSGLHDVSNFARDTY 303 (427)
Q Consensus 238 l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq----P~~---~-------~d~~~~~~L~~~~r~~~ 303 (427)
++.+++..++..+.+--++.+++++..+.++.+++.+.. +||= |-. . .|.+.+.++.+.+++.+
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad--~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGAD--ALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV 167 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc
Confidence 333333333556666666667777777777777665532 5662 322 0 23455666666555556
Q ss_pred CCeEEecCC--CCCHHHHHHHHHcCCCcEEE
Q 014285 304 GISVVADES--CRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 304 ~iPIa~dE~--~~~~~~~~~ll~~~a~~~i~ 332 (427)
.+||..==+ ..+..++.+.+....+|.|.
T Consensus 168 ~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 168 KIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred CCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 677654322 12333454444444567665
No 393
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=33.24 E-value=4.1e+02 Score=24.86 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=73.2
Q ss_pred eecCCCHHHHHHHHHHHhhcCCcEEEEec--c---CCchhhHHHHHHHHHhCCCcEEEEeCCCC-CCHHHHHHHHHHhhh
Q 014285 199 TIPAVSPAEASELASKYCKLGFSTLKLNV--G---RNITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAVEVLGKLND 272 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKi--G---~~~~~d~~~l~~ir~~~~~~~L~vDAN~~-~s~~~A~~~l~~L~~ 272 (427)
++...++..+.++++++.+.|...+-+.+ | +++....+.++++|+.+|++.+ |++=- -+++. +++.+.+
T Consensus 12 Si~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm~~~p~~---~i~~~~~ 86 (228)
T PTZ00170 12 SILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFL--DCHLMVSNPEK---WVDDFAK 86 (228)
T ss_pred hHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCE--EEEECCCCHHH---HHHHHHH
Confidence 34345677788889999888998888887 3 2556678899999997765443 44432 34554 4455655
Q ss_pred CCCCCceEeCCCCC-CC-hh-hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE---EeCCCCcc
Q 014285 273 MGVIPVLFEQPVHR-DD-WS-GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV---NIKLAKFG 339 (427)
Q Consensus 273 ~~l~~~~iEqP~~~-~d-~~-~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i---~lk~~~~G 339 (427)
.+.. ++==.... .+ +. .++.+.+ ....+-|++. -.+...+++.+++...+|+| ...|+.-|
T Consensus 87 ~Gad--~itvH~ea~~~~~~~~l~~ik~---~G~~~gval~-p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~g 153 (228)
T PTZ00170 87 AGAS--QFTFHIEATEDDPKAVARKIRE---AGMKVGVAIK-PKTPVEVLFPLIDTDLVDMVLVMTVEPGFGG 153 (228)
T ss_pred cCCC--EEEEeccCCchHHHHHHHHHHH---CCCeEEEEEC-CCCCHHHHHHHHccchhhhHHhhhcccCCCC
Confidence 5543 22111111 11 22 2222221 1122334444 22467777777744456655 56676666
No 394
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=33.21 E-value=5.3e+02 Score=26.09 Aligned_cols=116 Identities=14% Similarity=0.228 Sum_probs=71.2
Q ss_pred HHHHhhcCCcEEEEeccC--------CchhhHHHHHHHHHh----CC--CcEEE-E-----------eC---------CC
Q 014285 212 ASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HP--HCSFI-L-----------DA---------NE 256 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~~ir~~----~~--~~~L~-v-----------DA---------N~ 256 (427)
+.+.++.||+.+-+.-.. ++++.+++-+.+-+. += +.+|- | |- ..
T Consensus 91 i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~ 170 (347)
T PRK13399 91 CQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQ 170 (347)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccc
Confidence 455678999999998763 278888888877662 21 23331 1 21 12
Q ss_pred CC-CHHHHHHHHHHhh----------hCCCCCceEe--CCC-CCCChhhHHHHHHhhcccc-CCeEEecC-CCCC-----
Q 014285 257 GY-TSEEAVEVLGKLN----------DMGVIPVLFE--QPV-HRDDWSGLHDVSNFARDTY-GISVVADE-SCRS----- 315 (427)
Q Consensus 257 ~~-s~~~A~~~l~~L~----------~~~l~~~~iE--qP~-~~~d~~~~~~L~~~~r~~~-~iPIa~dE-~~~~----- 315 (427)
.| +|++|.+|.++.. -.|+ |-. +|- +.-+++-++++++ .+ ++|+.+.= |-..
T Consensus 171 ~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~L~~drl~eI~~----~v~~vPLVLHGgSGvp~~~~~ 243 (347)
T PRK13399 171 MLTDPDQAVDFVQRTGVDALAIAIGTSHGA---YKFTRKPDGDILAIDRIEEIHA----RLPNTHLVMHGSSSVPQELQE 243 (347)
T ss_pred cCCCHHHHHHHHHHHCcCEEhhhhccccCC---cCCCCCCChhhccHHHHHHHHh----hcCCCCEEEeCCCCCCHHHHH
Confidence 26 4999999998642 1232 433 342 2246888888875 56 69998764 3333
Q ss_pred ----------------HHHHHHHHHcCCCcEEEeCC
Q 014285 316 ----------------LNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 316 ----------------~~~~~~ll~~~a~~~i~lk~ 335 (427)
.++++++++.+ +.=||+..
T Consensus 244 ~~~~~g~~~~~~~g~~~e~~~kai~~G-I~KINi~T 278 (347)
T PRK13399 244 IINAYGGKMKETYGVPVEEIQRGIKHG-VRKVNIDT 278 (347)
T ss_pred HHHHhcCCccccCCCCHHHHHHHHHCC-CeEEEeCh
Confidence 45677777655 33455554
No 395
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=33.06 E-value=2.2e+02 Score=28.68 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHhhhCCCC--CceEeCCCCCCChhhHHHHHHhhccc-cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 258 YTSEEAVEVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~--~~~iEqP~~~~d~~~~~~L~~~~r~~-~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
|++.+ .++..++.|-. +..=|+..-.+.++.++++++ . +.+||---+-+++..++.+.-..+ .|.|.+=
T Consensus 139 ~dp~~---iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~----~~v~lPvLrKDFIID~yQI~eAr~~G-ADAVLLI 210 (338)
T PLN02460 139 FDPVE---IAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRN----AGVKCPLLCKEFIVDAWQIYYARSKG-ADAILLI 210 (338)
T ss_pred CCHHH---HHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHH----cCCCCCEeeccccCCHHHHHHHHHcC-CCcHHHH
Confidence 45544 44444444321 235678888899999998875 4 789999999999999987766554 7877776
Q ss_pred CCCccHHHHHHHHHHHHHcCCcEEEc
Q 014285 335 LAKFGVLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (427)
...++-....++.++|+..|+.+.+-
T Consensus 211 aaiL~~~~L~~l~~~A~~LGme~LVE 236 (338)
T PLN02460 211 AAVLPDLDIKYMLKICKSLGMAALIE 236 (338)
T ss_pred HHhCCHHHHHHHHHHHHHcCCeEEEE
Confidence 65555456889999999999998754
No 396
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.75 E-value=4.7e+02 Score=25.43 Aligned_cols=149 Identities=8% Similarity=0.121 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+++ ....+.+.+=. ++-+.+++++.++..++.|..
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv-~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT-GALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC-CcchHHHHHHHHHHHHHcCCC
Confidence 67778888999999998876654321 23333445666665 34556676433 336789999999999988765
Q ss_pred CceEeCCCC--CCC---hhhHHHHHHhhcccc-CCeEEecC------CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHH
Q 014285 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTY-GISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGT 343 (427)
Q Consensus 277 ~~~iEqP~~--~~d---~~~~~~L~~~~r~~~-~iPIa~dE------~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~ 343 (427)
-..+--|.- +.+ .+-++.+++ .+ ++||.+=. ...+...+.++.+. .++++-+|-+- | +...
T Consensus 98 ~v~v~pP~y~~~~~~~l~~~f~~ia~----a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~-~pnv~giK~ss-~d~~~~ 171 (294)
T TIGR02313 98 AAMVIVPYYNKPNQEALYDHFAEVAD----AVPDFPIIIYNIPGRAAQEIAPKTMARLRKD-CPNIVGAKESN-KDFEHL 171 (294)
T ss_pred EEEEcCccCCCCCHHHHHHHHHHHHH----hccCCCEEEEeCchhcCcCCCHHHHHHHHhh-CCCEEEEEeCC-CCHHHH
Confidence 345666642 222 223455664 57 78987653 22345556777643 37888898864 6 6655
Q ss_pred HHHHHHHHHcCCcEEEc
Q 014285 344 LQIIKATRKSGLHLMID 360 (427)
Q Consensus 344 ~~~~~~A~~~gi~~~~~ 360 (427)
.++++.. ..++.+..+
T Consensus 172 ~~~~~~~-~~~~~v~~G 187 (294)
T TIGR02313 172 NHLFLEA-GRDFLLFCG 187 (294)
T ss_pred HHHHHhc-CCCeEEEEc
Confidence 5554332 124444443
No 397
>PRK00208 thiG thiazole synthase; Reviewed
Probab=32.63 E-value=4.6e+02 Score=25.22 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=75.0
Q ss_pred eecCCCHHHHHHHHHHHhhc-CCcEEEEeccCC----chhhHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHhh
Q 014285 199 TIPAVSPAEASELASKYCKL-GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFI-LDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKiG~~----~~~d~~~l~~ir~~-~~~~~L~-vDAN~~~s~~~A~~~l~~L~ 271 (427)
+-+..+.+|....++-.++. |-+-||+.|=.| ..+-.+.+++.+++ -+++... +=++ ++ ...++|+
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~---d~----~~ak~l~ 141 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD---DP----VLAKRLE 141 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC---CH----HHHHHHH
Confidence 34556788877666666553 678899988443 33456667777774 3344433 2111 33 3455556
Q ss_pred hCCCCCceEeCC----CCC----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 272 DMGVIPVLFEQP----VHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 272 ~~~l~~~~iEqP----~~~----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
+++.. .+ -| +-. -+.+.++.+++ ..++||..|=-+.+..|+.++++.+ +|.+.+-
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~gi~~~~~i~~i~e----~~~vpVIveaGI~tpeda~~AmelG-AdgVlV~ 204 (250)
T PRK00208 142 EAGCA--AV-MPLGAPIGSGLGLLNPYNLRIIIE----QADVPVIVDAGIGTPSDAAQAMELG-ADAVLLN 204 (250)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 66653 45 33 211 14555666654 4689999999999999999999986 5555543
No 398
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.56 E-value=4.7e+02 Score=25.34 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHhh-cCCcEEEEeccC------CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 204 SPAEASELASKYCK-LGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 204 ~~~~~~~~~~~~~~-~Gf~~iKlKiG~------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
|.+.+.+.++.+++ .|.+.+=+--.. ..++=.+.++.+++. ...+.+.+=+ ++.+.+++++.++..++.|.
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagv-g~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQV-GSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecC-CCCCHHHHHHHHHHHHHcCC
Confidence 57778888999999 998887665421 233334456666664 4456666633 45688999999999998876
Q ss_pred CCceEeCCCC--CCC---hhhHHHHHHhhccccCCeEEecC------CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHH
Q 014285 276 IPVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGT 343 (427)
Q Consensus 276 ~~~~iEqP~~--~~d---~~~~~~L~~~~r~~~~iPIa~dE------~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~ 343 (427)
.-..+=-|.- +.+ ++-++++++ .+++||..=. .-.+.+.+.++.+ .+.++-+|-+- | +...
T Consensus 101 d~v~v~~P~y~~~~~~~l~~~f~~va~----a~~lPv~iYn~P~~tg~~l~~~~l~~L~~--~pnvvgiK~s~-~d~~~~ 173 (293)
T PRK04147 101 DAISAVTPFYYPFSFEEICDYYREIID----SADNPMIVYNIPALTGVNLSLDQFNELFT--LPKVIGVKQTA-GDLYQL 173 (293)
T ss_pred CEEEEeCCcCCCCCHHHHHHHHHHHHH----hCCCCEEEEeCchhhccCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHH
Confidence 4234444542 111 223455654 5788887653 2234555677763 47888898864 5 6665
Q ss_pred HHHH
Q 014285 344 LQII 347 (427)
Q Consensus 344 ~~~~ 347 (427)
.++.
T Consensus 174 ~~~~ 177 (293)
T PRK04147 174 ERIR 177 (293)
T ss_pred HHHH
Confidence 5554
No 399
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=32.40 E-value=2.6e+02 Score=30.42 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=43.2
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-H----------------------HHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V----------------------LGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i----------------------~~~~~~~~~A~~~gi~~~ 358 (427)
.+++|+.+|=+..- .-...+++ .++-+.+.|..+| - .....+++.|+++|+++-
T Consensus 82 G~~iPLVADIHF~~-~~A~~a~~--~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iR 158 (611)
T PRK02048 82 GYMVPLVADVHFNP-KVADVAAQ--YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIR 158 (611)
T ss_pred CCCCCEEEecCCCc-HHHHHHHH--hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 36899999966433 33344444 3899999998886 3 356779999999999998
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
++...
T Consensus 159 IGvN~ 163 (611)
T PRK02048 159 IGVNH 163 (611)
T ss_pred EecCC
Confidence 87543
No 400
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=31.78 E-value=3.1e+02 Score=29.68 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=43.7
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccH-----------------------HHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGV-----------------------LGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi-----------------------~~~~~~~~~A~~~gi~~~ 358 (427)
.+++|+.+|=+. +..-...+++. ++-+.+.|..+|- .....+++.|+++|+++-
T Consensus 86 g~~iPLVADIHF-~~~~A~~a~~~--vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IR 162 (606)
T PRK00694 86 GISIPLVADIHF-FPQAAMHVADF--VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMR 162 (606)
T ss_pred CCCCCEEeecCC-ChHHHHHHHHh--cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 478999999664 33333444443 8899999988862 357789999999999998
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
++...
T Consensus 163 IGvN~ 167 (606)
T PRK00694 163 IGVNH 167 (606)
T ss_pred EecCC
Confidence 87543
No 401
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=31.72 E-value=4e+02 Score=27.59 Aligned_cols=97 Identities=14% Similarity=0.276 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeCCCC---CCChhhHHHHHHhhccccCC----eEEecCCCCCHHHHHHHHHcCCC
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH---RDDWSGLHDVSNFARDTYGI----SVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~---~~d~~~~~~L~~~~r~~~~i----PIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
-.++.++=+++++.|+++|+. +||==.+ +++.+..+.++. ..++ .++.- ......+++.+++.+..
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~--~IE~g~p~~s~~~~~~~~~i~~----~~~~~~~~~~~~~-~~~~~~~~ea~~~a~~~ 91 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVD--YIEAGFPVASPGDFEFVRAIAE----KAGLFICALIAAL-ARAIKRDIEALLEAGVD 91 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEeCCcCChhhHHHHHHHHH----hcCcccchhhhhh-HHhHHhhHHHHHhCCCC
Confidence 358999999999999999986 9997766 345555555542 1222 11111 11122356777777654
Q ss_pred cEEEeCCC------------Ccc-HHHHHHHHHHHHHcCCcEEE
Q 014285 329 SVVNIKLA------------KFG-VLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 329 ~~i~lk~~------------~~G-i~~~~~~~~~A~~~gi~~~~ 359 (427)
.+-....+ +.- +.-+.+.+++|+.+|+.+..
T Consensus 92 ~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~ 135 (409)
T COG0119 92 RIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF 135 (409)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 44333322 223 44567889999999999884
No 402
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=31.41 E-value=4.9e+02 Score=26.11 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEec
Q 014285 233 ADFDVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVAD 310 (427)
Q Consensus 233 ~d~~~l~~ir~~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~d 310 (427)
-+-+.++++-++| +++++-.+--++-..+..++.++--.+++.. .=+|=|.-++..+...++.+.+. ..+ -=+-..
T Consensus 122 ~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~d-vG~EiPaipg~e~~i~e~~~~~~-~~~~~FlNiN 199 (353)
T COG2108 122 ATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMD-VGVEIPAIPGEEEAILEFAKALD-ENGLDFLNIN 199 (353)
T ss_pred CCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCcc-ceeecCCCcchHHHHHHHHHHHH-hcccceeeee
Confidence 3456777777765 6666666622333345555555544466654 36899998876666666655332 222 223445
Q ss_pred CCCCCHHHHHHHHHcCCCcEEEeCCCCc-c-HHHHHHHHHHHHHcCCcEEEcc
Q 014285 311 ESCRSLNDVQKVMQENLASVVNIKLAKF-G-VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 311 E~~~~~~~~~~ll~~~a~~~i~lk~~~~-G-i~~~~~~~~~A~~~gi~~~~~s 361 (427)
|-..+-..+.++.+.+ ....--..+-+ | ...++++.+.|+.. ..+.+|-
T Consensus 200 ELE~sE~N~~~l~~~g-y~~~~~~~~av~GS~E~~Lk~l~~~~~~-~~l~vH~ 250 (353)
T COG2108 200 ELEFSENNYENLLERG-YKISDDGSSAVAGSLEAALKVLKWAEEN-WDLTVHY 250 (353)
T ss_pred eeeeccchHHHHHhcC-ceeccCCcccccchHHHHHHHHHHHhcc-cCceEEE
Confidence 6555666667777653 33333333333 8 88899999999876 5555653
No 403
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=31.34 E-value=3.2e+02 Score=28.13 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCC---CCChhhHHHHHHhhccccCCeEEecCCCCCHHHH-HH
Q 014285 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDV-QK 321 (427)
Q Consensus 246 ~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~---~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~-~~ 321 (427)
|.+.+.+|. .+.++|+++++.|.+++. .|+|==.+ ..-.+..++|++ .....+|-+|=.+.+.... -+
T Consensus 173 p~L~vALD~---~~~~~A~~i~~~l~~~~~--~~iKvG~~L~~~~G~~iVk~Lr~---~~~~~~I~~DLK~~Di~~~vv~ 244 (391)
T PRK13307 173 PYLQVALDL---PDLEEVERVLSQLPKSDH--IIIEAGTPLIKKFGLEVISKIRE---VRPDAFIVADLKTLDTGNLEAR 244 (391)
T ss_pred ceEEEecCC---CCHHHHHHHHHhcccccc--eEEEECHHHHHHhCHHHHHHHHH---hCCCCeEEEEecccChhhHHHH
Confidence 566777774 578999999999998754 28886543 222344555653 1256899999988887765 43
Q ss_pred HHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEE
Q 014285 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 322 ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (427)
.+....+|++.+-..- |.....+.++.++++|+.+.+
T Consensus 245 ~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 245 MAADATADAVVISGLA-PISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEE
Confidence 4444568998887632 444567788899999999988
No 404
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=31.05 E-value=4.4e+02 Score=25.26 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=36.7
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
++..++||+.|= .+..-++..++.+ +++|| +.+ |...-.+++.+++++|.+++.-.
T Consensus 72 ~~~~~~plSIDT--~~~~v~e~al~~G-~~iIN-dis--g~~~~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 72 RGELDVLISVDT--FRAEVARAALEAG-ADIIN-DVS--GGSDDPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred HhcCCCcEEEeC--CCHHHHHHHHHhC-CCEEE-eCC--CCCCChHHHHHHHHcCCCEEEEC
Confidence 345689999984 3556678888875 77665 222 32111567888999999987643
No 405
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=31.02 E-value=1.1e+02 Score=33.22 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=54.6
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH---hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA---VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~---~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|+.|++.+.+.+++. +..-..+-+|.-. ....|-..++++-+ .|.++...|.--.+|+-+.=+.|+++|++.|.|
T Consensus 350 PYeSF~~Vv~fl~qA-A~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvh 428 (696)
T COG0855 350 PYESFEPVVEFLRQA-AADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVH 428 (696)
T ss_pred chhhhHHHHHHHHHh-hcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcE
Confidence 344666666666665 4455555555432 13456667777765 378999999999999988889999999999987
Q ss_pred C
Q 014285 277 P 277 (427)
Q Consensus 277 ~ 277 (427)
.
T Consensus 429 V 429 (696)
T COG0855 429 V 429 (696)
T ss_pred E
Confidence 4
No 406
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=31.02 E-value=6e+02 Score=26.07 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeC----CCC----------CCChhhHHHHHHhhcc
Q 014285 236 DVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ----PVH----------RDDWSGLHDVSNFARD 301 (427)
Q Consensus 236 ~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq----P~~----------~~d~~~~~~L~~~~r~ 301 (427)
+.++.+++..++..+.+--|+.-++++..++++.+++.+.. +||= |-. ..+.+.+.++.+.+++
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d--~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~ 165 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGAD--GIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKR 165 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCC--EEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHh
Confidence 33334443334445556656655666667777777766542 6663 220 0345566666666555
Q ss_pred ccCCeEEecC--CCCCHHHHHHHHHcCCCcEEE
Q 014285 302 TYGISVVADE--SCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 302 ~~~iPIa~dE--~~~~~~~~~~ll~~~a~~~i~ 332 (427)
.+.+||..== ...+..++.+.++...+|.+.
T Consensus 166 ~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 166 GSRLPVIVKLTPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred ccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEE
Confidence 5667765432 223345555555555677766
No 407
>PLN02858 fructose-bisphosphate aldolase
Probab=30.85 E-value=3.5e+02 Score=32.73 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=74.0
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh-CC-----CcEEE-E---------eCC-CCC-CHHHHHHHHHHhh-
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV-HP-----HCSFI-L---------DAN-EGY-TSEEAVEVLGKLN- 271 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~-----~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~- 271 (427)
+.+.++.||+.+-+.-.. ++++.+++.+.+.+. .+ +.+|- | +.+ ..| ++++|.+|+++-.
T Consensus 1185 i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~Tgv 1264 (1378)
T PLN02858 1185 LLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGI 1264 (1378)
T ss_pred HHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCC
Confidence 445567899999999765 789999988888762 11 12221 1 111 125 5999999998631
Q ss_pred -h----C-CCCCceEeCCCCCCChhhHHHHHHhhcccc---CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 272 -D----M-GVIPVLFEQPVHRDDWSGLHDVSNFARDTY---GISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 272 -~----~-~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~---~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
- + ..|=.|-.. -+.-|++-++++++ .+ ++|+.+.= |=...++++++++.+ +.=||+.-
T Consensus 1265 D~LAvaiGt~HG~Y~~~-~p~l~~~~l~~i~~----~~~~~~vpLVlHGgSG~~~~~~~~ai~~G-i~KiNi~T 1332 (1378)
T PLN02858 1265 DALAVCIGNVHGKYPAS-GPNLRLDLLKELRA----LSSKKGVLLVLHGASGLPESLIKECIENG-VRKFNVNT 1332 (1378)
T ss_pred cEEeeecccccccCCCC-CCccCHHHHHHHHH----HhcCCCCcEEEeCCCCCCHHHHHHHHHcC-CeEEEeCH
Confidence 1 1 122113321 24558888999986 45 78987754 667778889888765 33355543
No 408
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.79 E-value=4.6e+02 Score=24.68 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=65.4
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-C-CcEEEEeC-CC------CCCH--HHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDA-NE------GYTS--EEA 263 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-~~~L~vDA-N~------~~s~--~~A 263 (427)
|+-...++.+.+++ +++.+.|...+ =+|...-+|.+.++.+.+.+ + .+.+.+|+ .+ +|.. -..
T Consensus 75 ~v~vGGGIrs~e~~----~~~l~~Ga~kv--vigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~ 148 (232)
T PRK13586 75 WIQVGGGIRDIEKA----KRLLSLDVNAL--VFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEV 148 (232)
T ss_pred CEEEeCCcCCHHHH----HHHHHCCCCEE--EECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCH
Confidence 33344456676554 45667776654 45644446778888888764 4 57889999 22 3421 123
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCC------ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRD------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
.+++++++++++. .+|=.-+..+ |++.++++++ . ..|+...=-+.+..|++++.+.
T Consensus 149 ~e~~~~l~~~g~~-~ii~tdI~~dGt~~G~d~el~~~~~~----~-~~~viasGGv~s~~Dl~~l~~~ 210 (232)
T PRK13586 149 IDGIKKVNELELL-GIIFTYISNEGTTKGIDYNVKDYARL----I-RGLKEYAGGVSSDADLEYLKNV 210 (232)
T ss_pred HHHHHHHHhcCCC-EEEEecccccccCcCcCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHC
Confidence 4566666666543 2333333322 4555555543 2 2223333356667777666654
No 409
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=30.65 E-value=4.9e+02 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEcc
Q 014285 340 VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s 361 (427)
+...++.++.++++|+++..|-
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeE
Confidence 6677888899999999986553
No 410
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.47 E-value=4.5e+02 Score=25.51 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 235 FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 235 ~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
.+.++.+.+.|.+.--..|..|..+|.+..++++.+.+
T Consensus 150 ~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 150 FQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 44455555667665556799999999999999988865
No 411
>PRK08444 hypothetical protein; Provisional
Probab=30.22 E-value=3.5e+02 Score=27.35 Aligned_cols=28 Identities=21% Similarity=0.004 Sum_probs=20.2
Q ss_pred CCCccHHHHHHHHHHHHHcCCcEEEccc
Q 014285 335 LAKFGVLGTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~s~ 362 (427)
|.+.--.+++++.+.|++.|+++.-+.+
T Consensus 183 p~k~~~~~~~~i~~~a~~~Gi~~~sg~l 210 (353)
T PRK08444 183 KGKVSSERWLEIHKYWHKKGKMSNATML 210 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeE
Confidence 3343356788888999999999865543
No 412
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=30.01 E-value=1.7e+02 Score=28.65 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe-----ccC---CchhhHHHH----HHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 203 VSPAEASELASKYCKLGFSTLKLN-----VGR---NITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK-----iG~---~~~~d~~~l----~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
.+++.+.+++++++++|-..|-+- .|. +.+++++|+ +++++.. ++.|.||... ++.|.+.++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~~---~~va~~AL~ 108 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTSK---PEVIRESAK 108 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECCC---HHHHHHHHH
Confidence 378889999999999998887765 332 345666664 3334322 6889999654 454444444
No 413
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=29.97 E-value=1.3e+02 Score=29.86 Aligned_cols=82 Identities=9% Similarity=0.095 Sum_probs=54.4
Q ss_pred eEeCCCCCCC-hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc-CCCcEEEeCCCCccHHHH-HHHHHHHHHcCC
Q 014285 279 LFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAKFGVLGT-LQIIKATRKSGL 355 (427)
Q Consensus 279 ~iEqP~~~~d-~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~-~a~~~i~lk~~~~Gi~~~-~~~~~~A~~~gi 355 (427)
|.+..++.++ +..+.+|.+ .+.==+.|-|..+.+.+.++.+. ..++.+|..-+.+- ... .+++.+|+++|+
T Consensus 127 ~~d~~~p~~e~~~aL~~l~~-----~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~-R~~e~~l~~~~~~~gi 200 (316)
T COG0667 127 RPDPETPIEETLEALDELVR-----EGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLE-RDAEKELLPLCREEGI 200 (316)
T ss_pred CCCCCCCHHHHHHHHHHHHH-----cCCeeEEEecCCCHHHHHHHHHhcCCceeecccCcccc-ccchhHHHHHHHHcCC
Confidence 5554444322 445555543 45545677788899999888877 36677777766664 122 238999999999
Q ss_pred cEEEcccCchh
Q 014285 356 HLMIDGMIETR 366 (427)
Q Consensus 356 ~~~~~s~~es~ 366 (427)
.+.+-+.+.+|
T Consensus 201 ~~~~~spla~G 211 (316)
T COG0667 201 GLLAYSPLASG 211 (316)
T ss_pred eEEEecCcccc
Confidence 99988766544
No 414
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.89 E-value=2.2e+02 Score=27.95 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHH--cCCcEEEcc
Q 014285 312 SCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRK--SGLHLMIDG 361 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~--~gi~~~~~s 361 (427)
++.+.+++.++++.+ +|+|++|. .|+....+++++.++ .++++...+
T Consensus 202 Ev~tleea~eA~~~G-aD~I~LDn--~~~e~l~~av~~~~~~~~~i~leAsG 250 (288)
T PRK07428 202 ETETLEQVQEALEYG-ADIIMLDN--MPVDLMQQAVQLIRQQNPRVKIEASG 250 (288)
T ss_pred ECCCHHHHHHHHHcC-CCEEEECC--CCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 678899999998765 89999995 445555555555553 345554443
No 415
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=29.88 E-value=2.7e+02 Score=25.70 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=42.5
Q ss_pred ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCC
Q 014285 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGL 355 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi 355 (427)
+++-.+++++ ..++|+..+=.+.+.++++++++.+ +|.+.+.-... .....+.+++++.+.
T Consensus 61 ~~~~i~~i~~----~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~l--~dp~~~~~i~~~~g~ 121 (234)
T cd04732 61 NLELIEEIVK----AVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAAV--KNPELVKELLKEYGG 121 (234)
T ss_pred CHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchHH--hChHHHHHHHHHcCC
Confidence 5667777765 5679999988899999999999876 77776544333 333334555666665
No 416
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=29.71 E-value=6.3e+02 Score=25.93 Aligned_cols=106 Identities=8% Similarity=0.119 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhCCCcEEEEe--CCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC-ChhhHHHHHHhhccccCCeEEec
Q 014285 234 DFDVLQAIHAVHPHCSFILD--ANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD-DWSGLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 234 d~~~l~~ir~~~~~~~L~vD--AN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~-d~~~~~~L~~~~r~~~~iPIa~d 310 (427)
-.+.++.|.+ .-++.|+|| .|-..+++-...-++.+...+. +=-....+ +|+.+.+++. +.+.|+..-
T Consensus 176 ~a~~vk~V~~-av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kp----LL~SAt~e~Ny~~ia~lAk----~yg~~Vvv~ 246 (389)
T TIGR00381 176 AAKVLEDVLQ-AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERC----LLASANLDLDYEKIANAAK----KYGHVVLSW 246 (389)
T ss_pred HHHHHHHHHH-hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCc----EEEecCchhhHHHHHHHHH----HhCCeEEEE
Confidence 3444444433 246889999 5777888776777777776432 11122233 8889999886 577776542
Q ss_pred --CCCCCHHHHHHHHHcCCCc--EEEeCCCC----ccHHHHHHHHH
Q 014285 311 --ESCRSLNDVQKVMQENLAS--VVNIKLAK----FGVLGTLQIIK 348 (427)
Q Consensus 311 --E~~~~~~~~~~ll~~~a~~--~i~lk~~~----~Gi~~~~~~~~ 348 (427)
-++-...++.+.+....+. =|++||+- -|+..+...+.
T Consensus 247 s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~e 292 (389)
T TIGR00381 247 TIMDINMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNME 292 (389)
T ss_pred cCCcHHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHH
Confidence 1222333444444433343 58899987 34554444333
No 417
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=29.49 E-value=3.5e+02 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=20.5
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 014285 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (427)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (427)
++|-...-.+.+.+|..++++-..+.++.+.+||
T Consensus 154 VKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE 187 (322)
T COG2896 154 VKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIE 187 (322)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEE
Confidence 5666666666666666666666666555445555
No 418
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=29.47 E-value=6.2e+02 Score=25.78 Aligned_cols=75 Identities=8% Similarity=0.135 Sum_probs=49.3
Q ss_pred CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC---c-c-HHHHHHHHHHHHH--cCCcEEE
Q 014285 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK---F-G-VLGTLQIIKATRK--SGLHLMI 359 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~---~-G-i~~~~~~~~~A~~--~gi~~~~ 359 (427)
-+|+.++.|++ .+++||..-|- .+.++.+++++.+ +|.|.+.-.- . + .+...-+.+++++ ..++++.
T Consensus 211 ~tW~di~wlr~----~~~~PiivKgV-~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 211 LSWKDVQWLQT----ITKLPILVKGV-LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 284 (367)
T ss_pred CCHHHHHHHHh----ccCCCEEeecC-CCHHHHHHHHHcC-CCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 37888998875 78999999987 5789999999876 7776654321 1 1 2222223333343 3488888
Q ss_pred cccCchhH
Q 014285 360 DGMIETRL 367 (427)
Q Consensus 360 ~s~~es~i 367 (427)
.+-+-++.
T Consensus 285 dGGIr~G~ 292 (367)
T PLN02493 285 DGGVRRGT 292 (367)
T ss_pred eCCcCcHH
Confidence 87665543
No 419
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=29.23 E-value=5.2e+02 Score=25.37 Aligned_cols=114 Identities=16% Similarity=0.306 Sum_probs=74.0
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEE----------EEeCC--CCCCHHHHHHHHHHh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF----------ILDAN--EGYTSEEAVEVLGKL-- 270 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L----------~vDAN--~~~s~~~A~~~l~~L-- 270 (427)
+.+.++.||+.+-+.... ++++.++.-+.+-+. += +.+| .++.. .-.++++|+++.+.-
T Consensus 91 ~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgi 170 (286)
T COG0191 91 CKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGI 170 (286)
T ss_pred HHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCc
Confidence 445568999999998875 788888887777652 21 1222 12222 234699999999872
Q ss_pred hh--------CCCCCceE-eCCCCCCChhhHHHHHHhhccccCCeEEec-CCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 271 ND--------MGVIPVLF-EQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 271 ~~--------~~l~~~~i-EqP~~~~d~~~~~~L~~~~r~~~~iPIa~d-E~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.. .|+ |= +.| .-|++.++++.+ .+++|+.+. =|=...+++++.++.+ +.=+|++.
T Consensus 171 D~LA~aiGn~HG~---Yk~~~p--~L~~~~L~~i~~----~~~~PlVlHGgSGip~~eI~~aI~~G-V~KvNi~T 235 (286)
T COG0191 171 DALAAAIGNVHGV---YKPGNP--KLDFDRLKEIQE----AVSLPLVLHGGSGIPDEEIREAIKLG-VAKVNIDT 235 (286)
T ss_pred ceeeeeccccccC---CCCCCC--CCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHhC-ceEEeeCc
Confidence 21 222 21 344 246788888875 567888664 4778888999999876 44467765
No 420
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=29.23 E-value=62 Score=29.60 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=43.7
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-------HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-------VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-------i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
.++.|++|.--.+..++..+.. ..+++|.++...+. -.-...++++|+.+|+.++..+ +|+. ...++
T Consensus 146 ~G~~i~ld~~g~~~~~~~~l~~-l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g-Ve~~----~~~~~ 219 (236)
T PF00563_consen 146 LGFRIALDDFGSGSSSLEYLAS-LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEG-VESE----EQLEL 219 (236)
T ss_dssp CT-EEEEEEETSTCGCHHHHHH-HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEEC-E-SH----HHHHH
T ss_pred cCceeEeeeccCCcchhhhhhh-cccccceeecccccccchhhHHHHHHHHHHHhhccccccceee-cCCH----HHHHH
Confidence 4566666654444444444433 35899999887662 2234568889999999999876 3443 44555
Q ss_pred HhhcC
Q 014285 376 AAGLG 380 (427)
Q Consensus 376 aaal~ 380 (427)
+..+|
T Consensus 220 l~~~G 224 (236)
T PF00563_consen 220 LKELG 224 (236)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55554
No 421
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=28.67 E-value=1.3e+02 Score=33.22 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=52.4
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH---hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA---VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~---~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
|..|.+.+.+.+++. +.--.++.+|+.. -+..|-..++++.+ .|.++.+.||-..+|+.+.-+.+.++|++.|++
T Consensus 337 PY~Sf~~v~~~i~~A-a~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~ 415 (672)
T TIGR03705 337 PYESFDPVVEFLRQA-AEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVH 415 (672)
T ss_pred CccCHHHHHHHHHHH-hcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCE
Confidence 556777776666554 2333444444432 13345566666665 488999999999999988889999999998876
Q ss_pred C
Q 014285 277 P 277 (427)
Q Consensus 277 ~ 277 (427)
+
T Consensus 416 v 416 (672)
T TIGR03705 416 V 416 (672)
T ss_pred E
Confidence 3
No 422
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=28.55 E-value=3.7e+02 Score=27.15 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=70.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCC----------CCceEeCCCCCCChhh----------------HHHHHHhh--c
Q 014285 249 SFILDANEGYTSEEAVEVLGKLNDMGV----------IPVLFEQPVHRDDWSG----------------LHDVSNFA--R 300 (427)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l----------~~~~iEqP~~~~d~~~----------------~~~L~~~~--r 300 (427)
-+.+=.-.--++++|++++++|.+.+- + .++|-|=....|.| ++.+++.+ .
T Consensus 55 lvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR-~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~ 133 (349)
T PRK09261 55 LVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMR-VYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDI 133 (349)
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEE-eccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHH
Confidence 334444444577888888877765431 1 25677655433433 33333221 1
Q ss_pred cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc--HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 301 ~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
..+++|++.. +.+....+-+.+ -+++. .+| -++.....++|...++++.+-....+++..+..+-.+++
T Consensus 134 ~e~GlpvatE--~ld~~~~~y~~d--lvs~~-----~IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~ 204 (349)
T PRK09261 134 NELGLPAATE--FLDPITPQYIAD--LISWG-----AIGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAAS 204 (349)
T ss_pred HHhCCCeEEE--ecccccHHHHHh--hccee-----eeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHh
Confidence 3578999863 223223222221 13443 346 556677788888899999888777777777666655555
Q ss_pred cCC
Q 014285 379 LGC 381 (427)
Q Consensus 379 l~~ 381 (427)
.+.
T Consensus 205 ~~H 207 (349)
T PRK09261 205 APH 207 (349)
T ss_pred CCc
Confidence 443
No 423
>PRK10376 putative oxidoreductase; Provisional
Probab=28.50 E-value=5.4e+02 Score=24.77 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=47.6
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
++.+.+|.+ .+.==+.|=|.++..+++++.+...++.+|+..+..= ....++++.|+++||.++..+.+.
T Consensus 147 ~~~l~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~gi~v~a~~pL~ 216 (290)
T PRK10376 147 LTVLAELQR-----QGLVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAH-RADDALIDALARDGIAYVPFFPLG 216 (290)
T ss_pred HHHHHHHHH-----CCceeEEEecCCCHHHHHHHHhhCCeEEEecccCCCc-CChHHHHHHHHHcCCEEEEeecCC
Confidence 455555543 3332244556678888888887777888888777652 113568899999999998877653
No 424
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=28.44 E-value=3.8e+02 Score=29.85 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=63.7
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEE
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~ 358 (427)
.-|+..-.++++.++++++ .+.+||---+-+++..++.+.-..+ .|.|.+=...++-....++.+.|+..|+.+.
T Consensus 90 lTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFIid~~QI~ea~~~G-ADavLLI~~~L~~~~l~~l~~~a~~lGme~L 164 (695)
T PRK13802 90 LTEGRRFLGSLDDFDKVRA----AVHIPVLRKDFIVTDYQIWEARAHG-ADLVLLIVAALDDAQLKHLLDLAHELGMTVL 164 (695)
T ss_pred ecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcC-CCEeehhHhhcCHHHHHHHHHHHHHcCCeEE
Confidence 4577777889999998875 6899999999999999998777654 7888887766665578899999999999987
Q ss_pred Ecc
Q 014285 359 IDG 361 (427)
Q Consensus 359 ~~s 361 (427)
+-.
T Consensus 165 vEv 167 (695)
T PRK13802 165 VET 167 (695)
T ss_pred EEe
Confidence 543
No 425
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=28.38 E-value=3.4e+02 Score=26.76 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHhCCC-cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeC
Q 014285 231 ITADFDVLQAIHAVHPH-CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (427)
Q Consensus 231 ~~~d~~~l~~ir~~~~~-~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (427)
+++-++.++.+++.+-. +.+.+-.-.+.+.++..++++.+.+.++++.++|-
T Consensus 138 ~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~ 190 (334)
T TIGR02666 138 LEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRFIEL 190 (334)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 34445555555555433 55544333456667767777777777765556653
No 426
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=28.28 E-value=3.2e+02 Score=27.55 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=61.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc
Q 014285 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 304 ~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
.+=|..|+.+.....+...++....++...+...- -.....+.++.+++.+..++++- ++|-.+.++--++..+.+.
T Consensus 24 r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIai--GGGS~~D~aK~ia~~~~~~ 101 (374)
T cd08183 24 RVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAI--GGGSVIDAGKAIAALLPNP 101 (374)
T ss_pred cEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEe--cCchHHHHHHHHHHHHcCC
Confidence 45677888666444566777766677666553221 16678889999999999998863 3332233222222222221
Q ss_pred -ceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCC
Q 014285 383 -KYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWT 424 (427)
Q Consensus 383 -~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~ 424 (427)
...++..... ....+.. ..-..|.+|+.+|.|-|++.-
T Consensus 102 ~~~~~~~~~~~-~~~~~~~---~~~p~i~VPTtagTGSE~t~~ 140 (374)
T cd08183 102 GSVLDYLEGVG-RGLPLDG---PPLPFIAIPTTAGTGSEVTKN 140 (374)
T ss_pred CCHHHHHhccC-ccccCCC---CCCCEEEecCCCchhHHhCCe
Confidence 1111110000 0000110 012368899999999887653
No 427
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=28.20 E-value=5.5e+02 Score=25.99 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=72.0
Q ss_pred HhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E----eC-------C-CCC-CHHHHHHHHHHhh--
Q 014285 215 YCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----DA-------N-EGY-TSEEAVEVLGKLN-- 271 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v----DA-------N-~~~-s~~~A~~~l~~L~-- 271 (427)
.++.||+.+-+.-.. ++++.++.-+.+.+. += +.+|- | |. + ..| +|++|.+|.++..
T Consensus 124 a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~ 203 (350)
T PRK09197 124 GGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKI 203 (350)
T ss_pred cCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCC
Confidence 344569999888764 788889888887652 20 12221 1 11 1 225 5999999998754
Q ss_pred ---h-----CC-CCCceE-eCCCCCCChhhHHHHHHhhccc-----cCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 272 ---D-----MG-VIPVLF-EQPVHRDDWSGLHDVSNFARDT-----YGISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 272 ---~-----~~-l~~~~i-EqP~~~~d~~~~~~L~~~~r~~-----~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+ .| .|=.|- .+| .-|++-++++++.+.++ .++|+.+.= |=...++++++++.+ +.=||+..
T Consensus 204 ~~~D~LAvaiGt~HG~Yk~~~p--~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~G-I~KINi~T 280 (350)
T PRK09197 204 SGRFTIAASFGNVHGVYKPGNV--KLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYG-VVKMNIDT 280 (350)
T ss_pred CcceEEeeecccccCCcCCCCC--ccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC-CeeEEeCc
Confidence 1 11 121243 344 45788888887632101 169998754 667778899999876 44466654
Q ss_pred C
Q 014285 336 A 336 (427)
Q Consensus 336 ~ 336 (427)
-
T Consensus 281 ~ 281 (350)
T PRK09197 281 D 281 (350)
T ss_pred H
Confidence 3
No 428
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=28.17 E-value=4.6e+02 Score=26.58 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=45.9
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV----HPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~----~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
.+..|.+...+++.++.+.|-..+.+-+-. .++.+.++.|++. +-.+.|..|-+--|. -|++.++.++...
T Consensus 25 t~t~Dv~atv~QI~~L~~aGceivRvavp~--~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~--lAl~a~~~v~kiR 99 (359)
T PF04551_consen 25 TDTRDVEATVAQIKRLEEAGCEIVRVAVPD--MEAAEALKEIKKRLRALGSPIPLVADIHFDYR--LALEAIEAVDKIR 99 (359)
T ss_dssp S-TT-HHHHHHHHHHHHHCT-SEEEEEE-S--HHHHHHHHHHHHHHHCTT-SS-EEEEESTTCH--HHHHHHHC-SEEE
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHHHHHHHHhhccCCCCCCeeeecCCCHH--HHHHHHHHhCeEE
Confidence 344577778899999999999998887743 4666777777663 567999999976554 4566666655443
No 429
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=27.84 E-value=6.5e+02 Score=25.49 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=64.9
Q ss_pred EeCCCCCCHHHHHHHHHHhhhCC----------CCCceEeCCCCCCChhhH----------------HHHHHhh--cccc
Q 014285 252 LDANEGYTSEEAVEVLGKLNDMG----------VIPVLFEQPVHRDDWSGL----------------HDVSNFA--RDTY 303 (427)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~~~~----------l~~~~iEqP~~~~d~~~~----------------~~L~~~~--r~~~ 303 (427)
+=.-.--++++|++++++|.+.+ ++ .|+|-|=....|.++ ..+++.+ ....
T Consensus 59 ~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR-~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~ 137 (353)
T PRK12755 59 VGPCSIHDPEAALEYARRLKALADELSDRLLIVMR-VYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVEL 137 (353)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEE-eccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHh
Confidence 33334446777777777776542 11 256666554344443 2211110 1357
Q ss_pred CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc--HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcC
Q 014285 304 GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 304 ~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~ 380 (427)
++|++..= .-.++.-+.+++ ++ ..+| -++.....++|...++++.+-....+++..+..+-.|+..+
T Consensus 138 Glp~atE~ld~~~~~y~~Dlv-----s~-----~aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~ 207 (353)
T PRK12755 138 GLPLATEALDPISPQYLGDLI-----SW-----GAIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQP 207 (353)
T ss_pred CCCEEEEecCcccHHHHHhhh-----hh-----eeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCC
Confidence 88988632 112222222222 22 2346 55667778888888888888777777776666665555543
No 430
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=27.81 E-value=3.6e+02 Score=26.10 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=42.8
Q ss_pred chhhHHHHHHHHHhCCCcEEEEeCC-CCC--CHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 231 ITADFDVLQAIHAVHPHCSFILDAN-EGY--TSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 231 ~~~d~~~l~~ir~~~~~~~L~vDAN-~~~--s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+++=+..+++|++.-+..-+.+|.. ++| +++++.+...+ +++.+..-.-||.- .+..+-++.++ ..+||
T Consensus 60 l~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg--~~~~~~I~al~-----~agIp 132 (264)
T PRK00311 60 LDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG--EEVAETIKRLV-----ERGIP 132 (264)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHH-----HCCCC
Confidence 4455566677766544445779996 777 67887666544 44355433468883 11223344444 46899
Q ss_pred EEe
Q 014285 307 VVA 309 (427)
Q Consensus 307 Ia~ 309 (427)
++.
T Consensus 133 V~g 135 (264)
T PRK00311 133 VMG 135 (264)
T ss_pred Eee
Confidence 973
No 431
>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]
Probab=27.64 E-value=91 Score=28.98 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=32.3
Q ss_pred CcceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCc----eEEEEe
Q 014285 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----VGWGEV 112 (427)
Q Consensus 61 ~~~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~----~G~GE~ 112 (427)
..|.+-|+++++..+.. ..+.+.-.-.++|||+..||. +|||+.
T Consensus 82 NGWs~sI~~~~vd~~d~--------~~~k~~vg~~a~VrVtLkDGtyhEDiGyG~~ 129 (222)
T KOG4141|consen 82 NGWSSSITSVNVDFVDE--------EEGKFSVGVSAIVRVTLKDGTYHEDIGYGSA 129 (222)
T ss_pred Ccccccceeeecceecc--------ccCeEEEeEEEEEEEEEecCccccccccccc
Confidence 48999999999876654 334455556789999999884 577733
No 432
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.56 E-value=5.3e+02 Score=24.87 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEec--cC-CchhhHHHHHHHHHhCCCcEEEEeCCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNV--GR-NITADFDVLQAIHAVHPHCSFILDANEGY 258 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKi--G~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~ 258 (427)
+++.+.+.++++.+.|-..|-++= |. .+.+-.++++.+++..|++.|-+=++.-+
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 344444444444445555544442 22 23333444455555444444444444433
No 433
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.56 E-value=2.4e+02 Score=29.16 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=27.8
Q ss_pred CCcEEEe-CCCCcc-HHHHHHHHHHHHHcCCcEEEc
Q 014285 327 LASVVNI-KLAKFG-VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 327 a~~~i~l-k~~~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (427)
.++++++ |-.| | ++.+.+++++|+++|+++.+.
T Consensus 143 ~~~~vVLSDY~K-G~L~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 143 SFDALVLSDYAK-GVLTNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred cCCEEEEecccc-ccchhHHHHHHHHHHcCCcEEEC
Confidence 4677777 6666 7 999999999999999999874
No 434
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=27.49 E-value=4.8e+02 Score=23.84 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhCCCC-CceEeCCC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc
Q 014285 262 EAVEVLGKLNDMGVI-PVLFEQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~-~~~iEqP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G 339 (427)
+..++++..++.|.. +..+=++. ..+..+.++.+++ ...+||...--..+..+++.+.+.+ +|.+.+......
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~----~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~~~~ 106 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVRE----AVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALD 106 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHH----hcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeeccCC
Confidence 345566666665532 00222222 2345666666664 4689999876666776778788776 778876555445
Q ss_pred HHHHHHHHHHHHHcCCcEEEc
Q 014285 340 VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~ 360 (427)
.....++.+.+...|+.+++.
T Consensus 107 ~~~~~~~~~~~~~~g~~~~v~ 127 (217)
T cd00331 107 DEQLKELYELARELGMEVLVE 127 (217)
T ss_pred HHHHHHHHHHHHHcCCeEEEE
Confidence 556778888889999997644
No 435
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=27.10 E-value=4.9e+02 Score=25.36 Aligned_cols=38 Identities=18% Similarity=-0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 235 FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 235 ~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
++.++.+.+.|.+.--..|..|..+|.+..++++.+.+
T Consensus 158 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 158 ADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLA 195 (287)
T ss_pred HHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHH
Confidence 34445555566665555688888888888888887764
No 436
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.90 E-value=5.7e+02 Score=24.49 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-cCC--chhhHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNV-GRN--ITADFDVLQAIHAVH--PHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKi-G~~--~~~d~~~l~~ir~~~--~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
.+++++.+.++++.+.|++.+-+-. |.+ .+.-.+.++.+++.. .++.+.+-. +..+.+ .++.|.+.|+
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~-g~~~~e----~l~~Lk~aG~ 134 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATL-GLLDPE----QAKRLKDAGL 134 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecC-CCCCHH----HHHHHHHcCC
Confidence 4678888888888888998765543 332 222255666665521 244444322 344543 3444555444
No 437
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=26.86 E-value=4.5e+02 Score=24.13 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHcC--CcEEEccc
Q 014285 345 QIIKATRKSG--LHLMIDGM 362 (427)
Q Consensus 345 ~~~~~A~~~g--i~~~~~s~ 362 (427)
++.+++++++ ..++.|+.
T Consensus 134 ~~~~l~~~~~~~~~~i~H~~ 153 (251)
T cd01310 134 DVLEILKEYGPPKRGVFHCF 153 (251)
T ss_pred HHHHHHHhcCCCCCEEEEcc
Confidence 4455555553 44555543
No 438
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=26.75 E-value=6.7e+02 Score=25.28 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=80.7
Q ss_pred HHHHHHHhhcC--CcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CC-----CCC
Q 014285 209 SELASKYCKLG--FSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MG-----VIP 277 (427)
Q Consensus 209 ~~~~~~~~~~G--f~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~-----l~~ 277 (427)
.+++++++++| ...+-+.+-. .-+.-++.++.||+.+|+..+. +-.--|+++|.+.++.=.+ .+ ++.
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi--aGNV~T~e~a~~Li~aGAD~ikVgiGpGSict 186 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIM--AGNVVTGEMVEELILSGADIVKVGIGPGSVCT 186 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE--EecccCHHHHHHHHHcCCCEEEEcccCCCccc
Confidence 45677777774 8888888854 3355677899999988885544 2335688888877764222 01 111
Q ss_pred ceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 278 ~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
-=.-..+..-++..+.+.++.++ ..++||..|--+.+..|+.++|..+ ++.+.+-
T Consensus 187 tR~~~Gvg~pqltAv~~~a~aa~-~~~v~VIaDGGIr~~gDI~KALA~G-Ad~VMlG 241 (343)
T TIGR01305 187 TRTKTGVGYPQLSAVIECADAAH-GLKGHIISDGGCTCPGDVAKAFGAG-ADFVMLG 241 (343)
T ss_pred CceeCCCCcCHHHHHHHHHHHhc-cCCCeEEEcCCcCchhHHHHHHHcC-CCEEEEC
Confidence 11222333236677777666442 4589999999999999999999876 6777776
No 439
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=26.67 E-value=4.7e+02 Score=24.90 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCcE------EEcccCchhHHHHHHHHHH
Q 014285 340 VLGTLQIIKATRKSGLHL------MIDGMIETRLATGFALHLA 376 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~------~~~s~~es~ig~~a~~hla 376 (427)
+...+++...|+++||++ .++|..|+.+.-...+.++
T Consensus 133 ~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~ 175 (316)
T KOG2368|consen 133 LKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVV 175 (316)
T ss_pred HHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHH
Confidence 556778999999999985 6888889888777666555
No 440
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.38 E-value=3.1e+02 Score=28.35 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=48.4
Q ss_pred ceeeeeeecCCCHHHH-HHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH----hCC-CcEEEEeCCCCCCH-HHHHH
Q 014285 193 SLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA----VHP-HCSFILDANEGYTS-EEAVE 265 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~-~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~----~~~-~~~L~vDAN~~~s~-~~A~~ 265 (427)
+||+|.+..-.+|... .+-+++..+++|..|=+.-.....+|..+.+.+++ +.| ++-+.+||+-+-.. ++|..
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHH
Confidence 4576665444456555 44577788899999998876545666666666655 246 47778999977653 33444
Q ss_pred H
Q 014285 266 V 266 (427)
Q Consensus 266 ~ 266 (427)
|
T Consensus 236 F 236 (483)
T KOG0780|consen 236 F 236 (483)
T ss_pred H
Confidence 3
No 441
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=26.38 E-value=6.7e+02 Score=26.72 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC--------CeEEecCCCCCHHHHHHHHHc
Q 014285 254 ANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG--------ISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~--------iPIa~dE~~~~~~~~~~ll~~ 325 (427)
.+-.|+.++-+++++.|.+.|+. .||==+|.-.-++...+.+..+.... .|....=.-....|++..++.
T Consensus 99 ~gv~fs~eeKi~Ia~~L~~~GVd--~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 99 PGGSLTPPQKLEIARQLAKLRVD--IMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Q ss_pred ------CCCcEE----------EeCCCCcc-HHHHHHHHHHHHHcCCc-EEEcccCchhHHHHHHHHHHhhc
Q 014285 326 ------NLASVV----------NIKLAKFG-VLGTLQIIKATRKSGLH-LMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 326 ------~a~~~i----------~lk~~~~G-i~~~~~~~~~A~~~gi~-~~~~s~~es~ig~~a~~hlaaal 379 (427)
..+.++ +++.++-. +..+.+.+++|+++|.. +.+++...+-.-......++...
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a 248 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEA 248 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHH
No 442
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=26.30 E-value=5.4e+02 Score=24.04 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
.+|+.. ++.+.+.|-..+-+..-.....=.+.++.+++.+ ..+.|..|-.++.++..+++
T Consensus 75 ~~p~~~---i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~t~~e~l~~~l 134 (228)
T PTZ00170 75 SNPEKW---VDDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPKTPVEVLFPLI 134 (228)
T ss_pred CCHHHH---HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCCCCHHHHHHHH
Confidence 455554 3556677888888876532111134556667655 67788889999888877665
No 443
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.22 E-value=4.8e+02 Score=26.09 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 340 VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
..+.++.++.|++.|+++..+-++
T Consensus 187 ~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 187 AERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEe
Confidence 567789999999999998766554
No 444
>PRK08445 hypothetical protein; Provisional
Probab=26.01 E-value=2.4e+02 Score=28.40 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCch----hhHHHHHHHHHhCCCcEEEE------e---CCCCCCHHHHHHHHHHh
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNIT----ADFDVLQAIHAVHPHCSFIL------D---ANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~----~d~~~l~~ir~~~~~~~L~v------D---AN~~~s~~~A~~~l~~L 270 (427)
+++++.+.+++..+.|.+.|-+--|.++. .=.+.++.|++.+|++.+.. | .-+..+.+| .+++|
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e---~L~~L 150 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKE---VLERL 150 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHH---HHHHH
Confidence 78899898988889998888664454333 33556788888899887642 2 124555555 44455
Q ss_pred hhCCC
Q 014285 271 NDMGV 275 (427)
Q Consensus 271 ~~~~l 275 (427)
.+.|+
T Consensus 151 keAGl 155 (348)
T PRK08445 151 QAKGL 155 (348)
T ss_pred HHcCC
Confidence 55444
No 445
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=26.00 E-value=6.2e+02 Score=24.62 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc---hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI---TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~---~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
+++.+.+.++...+.|+..+-+.++... ..+.+.++.+++..+ +.+.+= +..++++|.. +.+.|.....+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvivK--~v~s~~~a~~----a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLILK--GILTPEDALR----AVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEEEe--ecCCHHHHHH----HHHCCCCEEEE
Confidence 6777777777777889999999988532 134567888888533 222221 1256666544 33444431122
Q ss_pred -----eCC-CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 281 -----EQP-VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 281 -----EqP-~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
-+. .....++.+.++++.+ ...+||..+--+.+..|+.+++..+ ++.+++
T Consensus 200 ~~~gG~~~~~g~~~~~~l~~i~~~~--~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~i 255 (299)
T cd02809 200 SNHGGRQLDGAPATIDALPEIVAAV--GGRIEVLLDGGIRRGTDVLKALALG-ADAVLI 255 (299)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 111 1122456666665421 1259999999999999999999865 677665
No 446
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.91 E-value=1e+02 Score=31.49 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHcCCCcEEEeCCCC-cc--HHH--HHHHHHHHHHcCCcEEE
Q 014285 314 RSLNDVQKVMQENLASVVNIKLAK-FG--VLG--TLQIIKATRKSGLHLMI 359 (427)
Q Consensus 314 ~~~~~~~~ll~~~a~~~i~lk~~~-~G--i~~--~~~~~~~A~~~gi~~~~ 359 (427)
+++..++.+++.+.+-++++.|+. +| ++. .+++++.|+++|+.+.-
T Consensus 187 IDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 187 IDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred echHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 567788999999999999999987 58 553 89999999999999864
No 447
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.84 E-value=6.4e+02 Score=24.72 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCC-chhh-HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRN-ITAD-FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-~~~d-~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
.+++++.+.++...+.|.+.|.+--|-. ...| .+.++.+++..+...+.+-.||..-. + .++.|.+.++
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~-~---~~~~L~~agl 119 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLA-R---RAAALKDAGL 119 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHH-H---HHHHHHHcCC
Confidence 3678887777777788988888865532 2223 34566666654456789999986532 2 3455555444
No 448
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=25.71 E-value=37 Score=27.36 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 232 ~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
+.++..+..+.+.+||..-.+=-+-..+.+++.+.++.|++.|+
T Consensus 7 ~l~~~IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GL 50 (92)
T PF10007_consen 7 PLDLKILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGL 50 (92)
T ss_pred hhHHHHHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 35677888888888775444434457789999999999999996
No 449
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.57 E-value=2e+02 Score=30.24 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=62.7
Q ss_pred ceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcE
Q 014285 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 278 ~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~ 357 (427)
..-|+..-.++++.++++++ .+.+||---+-+.+..++.+.-..+ .|.|.+=...++-....++++.|+..|+.+
T Consensus 88 VlTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFiid~~QI~ea~~~G-ADavLLI~~~L~~~~l~~l~~~a~~lGl~~ 162 (454)
T PRK09427 88 VLTDEKYFQGSFDFLPIVRA----IVTQPILCKDFIIDPYQIYLARYYG-ADAILLMLSVLDDEQYRQLAAVAHSLNMGV 162 (454)
T ss_pred EecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcC-CCchhHHHHhCCHHHHHHHHHHHHHcCCcE
Confidence 35677777889999998875 6789999999999999987776654 677777665555456788999999999998
Q ss_pred EEcc
Q 014285 358 MIDG 361 (427)
Q Consensus 358 ~~~s 361 (427)
.+-.
T Consensus 163 lvEv 166 (454)
T PRK09427 163 LTEV 166 (454)
T ss_pred EEEE
Confidence 7543
No 450
>PF13317 DUF4088: Protein of unknown function (DUF4088)
Probab=25.55 E-value=61 Score=29.72 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhc
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r 300 (427)
.|+++.++|.+.++.++....+ .|.|+|- +-+++++.++|
T Consensus 185 yGs~q~~eaq~vmE~l~~~~P~-lF~E~P~-----d~f~r~AAWlR 224 (229)
T PF13317_consen 185 YGSVQKQEAQRVMEQLRRLKPE-LFREEPD-----DVFARLAAWLR 224 (229)
T ss_pred hCCcCHHHHHHHHHHHHHhCcH-HhhcCch-----hHHHHHHHHHH
Confidence 5789999999999998887766 4899994 44667766554
No 451
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=25.53 E-value=2.8e+02 Score=27.47 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchh----hHHHHHHHHHhCCCcEE
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITA----DFDVLQAIHAVHPHCSF 250 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~----d~~~l~~ir~~~~~~~L 250 (427)
.+++++.+.++.+.+.|++.|-+--|.++.. =.+.++.|++.++++.+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 4788998888888889999888844433322 23567788877766543
No 452
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=25.43 E-value=7.8e+02 Score=25.59 Aligned_cols=163 Identities=13% Similarity=0.208 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCch--------hhHHHHHHHHHhCCCcEEEEeC---C----CCCCHHHHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNIT--------ADFDVLQAIHAVHPHCSFILDA---N----EGYTSEEAVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~--------~d~~~l~~ir~~~~~~~L~vDA---N----~~~s~~~A~~~l~ 268 (427)
..++|...++++-+.||..+.+--|.-|+ +-.+|++++|++-|.-.|..=. | ..|+-+-.-.|.+
T Consensus 26 rt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ 105 (472)
T COG5016 26 RTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVE 105 (472)
T ss_pred hHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHH
Confidence 35778888888888999999998887443 3478999999965533221111 1 2344444456777
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC----eEEecC-CCCCHHHH----HHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI----SVVADE-SCRSLNDV----QKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i----PIa~dE-~~~~~~~~----~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.|+.+.=|=+-+. |...|+.-.+.++ +.+- -|+-.- -+++.+-+ +++++. .+|.|.+|-+- |
T Consensus 106 ka~~nGidvfRiFDAlN--D~RNl~~ai~a~k-k~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~-g~DSIciKDma-G 180 (472)
T COG5016 106 KAAENGIDVFRIFDALN--DVRNLKTAIKAAK-KHGAHVQGTISYTTSPVHTLEYYVELAKELLEM-GVDSICIKDMA-G 180 (472)
T ss_pred HHHhcCCcEEEechhcc--chhHHHHHHHHHH-hcCceeEEEEEeccCCcccHHHHHHHHHHHHHc-CCCEEEeeccc-c
Confidence 77777775332323322 3333332222111 1221 122221 13444432 555555 47999998654 6
Q ss_pred -HH--HHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 340 -VL--GTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 -i~--~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
++ .+-+++...+ ..++++-+|+---+|++.++
T Consensus 181 lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ 216 (472)
T COG5016 181 LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMT 216 (472)
T ss_pred cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHH
Confidence 44 4666666554 56999999987667666554
No 453
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.35 E-value=1.5e+02 Score=23.38 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-------CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-------SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-------~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
++++++.|.++++++ + -.++-++.=+ ..++++.--. ...+..++.++++.+.+|.|+--+
T Consensus 2 ~~~~a~~l~~lG~~i-~--------AT~gTa~~L~----~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI-Y--------ATEGTAKFLK----EHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHHHHHHTTSEE-E--------EEHHHHHHHH----HTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHCCCEE-E--------EChHHHHHHH----HcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 567888888888653 1 1344443322 4677722211 112122488899999999888777
Q ss_pred CCcc--HH-HHHHHHHHHHHcCCcEE
Q 014285 336 AKFG--VL-GTLQIIKATRKSGLHLM 358 (427)
Q Consensus 336 ~~~G--i~-~~~~~~~~A~~~gi~~~ 358 (427)
...- .. ....+.+.|..++|++.
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred CCCcccccCCcHHHHHHHHHcCCCCc
Confidence 6653 33 78899999999999874
No 454
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=25.19 E-value=6.1e+02 Score=24.27 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=73.4
Q ss_pred eeecCCCHHHHHHHHHHHhhc-CCcEEEEeccCC----chhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 014285 198 ITIPAVSPAEASELASKYCKL-GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKiG~~----~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (427)
.+-+..+.+|....++-.++. |-+-||+.|=.| +-+-++.+++-+.. -++..+.- |..++ .-.+++|+
T Consensus 68 NTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v~akrL~ 141 (247)
T PF05690_consen 68 NTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-----YCTDD-PVLAKRLE 141 (247)
T ss_dssp E-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-----EE-S--HHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-----cCCCC-HHHHHHHH
Confidence 444567888887777766664 688999998543 23456777777763 33433332 22222 45778888
Q ss_pred hCCCC-CceEeCCCCCC----ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 272 DMGVI-PVLFEQPVHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 272 ~~~l~-~~~iEqP~~~~----d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+.|.. +.=+=-|+-.+ +...++.+++ +.++||..|=-+-++.|....++.+ +|.+.+.-
T Consensus 142 d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvNT 205 (247)
T PF05690_consen 142 DAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLVNT 205 (247)
T ss_dssp HTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGSSSBEEES---SHHHHHHHHHTT--SEEEESH
T ss_pred HCCCCEEEecccccccCcCCCCHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHcC-Cceeehhh
Confidence 87753 11234555432 4556676765 6799999999999999999999986 77776653
No 455
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=25.11 E-value=2.9e+02 Score=27.40 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHHHH-hCCC-cEEE--EeC-------------CCCCCHHHHHHHHHHhhhCCCC-CceEeCCCCCCChhhHHHHH
Q 014285 235 FDVLQAIHA-VHPH-CSFI--LDA-------------NEGYTSEEAVEVLGKLNDMGVI-PVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 235 ~~~l~~ir~-~~~~-~~L~--vDA-------------N~~~s~~~A~~~l~~L~~~~l~-~~~iEqP~~~~d~~~~~~L~ 296 (427)
...++.||+ .|.. +-|. ||+ -++||..|++..++.|..+++- -..+|=- |+.|.+++..|+
T Consensus 265 ~~i~e~ir~~~G~k~vYiSiDID~LDPafAPgtgtpE~gGlt~re~l~ILrglqGl~lVGaDvVEvs-P~yD~ae~Tal~ 343 (361)
T KOG2964|consen 265 DPIVERIRQRVGDKLVYISIDIDVLDPAFAPGTGTPETGGLTTREMLNILRGLQGLNLVGADVVEVS-PPYDVAEMTALA 343 (361)
T ss_pred HHHHHHHHHhcCCceEEEEEeecccCcccCCCCCCCCCCCcCHHHHHHHHhhCccccccccceEEec-CccchhhhHHHH
Confidence 457888898 4543 4444 444 3889999999999999875421 1234432 344577776665
Q ss_pred H
Q 014285 297 N 297 (427)
Q Consensus 297 ~ 297 (427)
+
T Consensus 344 A 344 (361)
T KOG2964|consen 344 A 344 (361)
T ss_pred H
Confidence 3
No 456
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=24.95 E-value=5.4e+02 Score=26.34 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=48.3
Q ss_pred ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc---H---HHHHHH-HHHHHH--cCCcEE
Q 014285 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG---V---LGTLQI-IKATRK--SGLHLM 358 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G---i---~~~~~~-~~~A~~--~gi~~~ 358 (427)
+|+.+++|++ .++.||..-+- .+..+.+.+++.+ +|+|.+- -+| + ..+... .+++++ .+++++
T Consensus 233 tW~di~~lr~----~~~~pvivKgV-~s~~dA~~a~~~G-vd~I~Vs--~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRD----FWDGPMVIKGI-LDPEDARDAVRFG-ADGIVVS--NHGGRQLDGVLSSARALPAIADAVKGDITIL 304 (381)
T ss_pred CHHHHHHHHH----hCCCCEEEEec-CCHHHHHHHHhCC-CCEEEEC--CCCCCCCCCcccHHHHHHHHHHHhcCCCeEE
Confidence 6888898876 68999999876 7888999999875 7776653 232 2 122232 223333 368998
Q ss_pred EcccCchhH
Q 014285 359 IDGMIETRL 367 (427)
Q Consensus 359 ~~s~~es~i 367 (427)
..+-+-++.
T Consensus 305 ~dGGIr~g~ 313 (381)
T PRK11197 305 ADSGIRNGL 313 (381)
T ss_pred eeCCcCcHH
Confidence 887665543
No 457
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.87 E-value=5.3e+02 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
+.....++.++.|++.|+++..+.
T Consensus 176 ~~~~~~~~~i~~a~~~Gi~v~s~~ 199 (343)
T TIGR03551 176 LSTAEWIEIIKTAHKLGIPTTATI 199 (343)
T ss_pred CCHHHHHHHHHHHHHcCCcccceE
Confidence 345677899999999999986543
No 458
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.84 E-value=7.4e+02 Score=25.11 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCC---------ceEeCCCCCCChhhH----------------HHHHHhh--ccccCCeEE
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIP---------VLFEQPVHRDDWSGL----------------HDVSNFA--RDTYGISVV 308 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~---------~~iEqP~~~~d~~~~----------------~~L~~~~--r~~~~iPIa 308 (427)
.--++++|++++++|.+.+-+. .|+|-|=..-.|.++ ..+++.+ ..+.++|++
T Consensus 62 SIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~GlPva 141 (356)
T PRK12822 62 SIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTLGLATA 141 (356)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3346788888888777643220 267777653334443 3222210 136899999
Q ss_pred ecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc--HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCC
Q 014285 309 ADE-SCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 309 ~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~ 381 (427)
.+= .-.++.-+.+++.- ..+| -++.....++|...++++.+-.....++..+..+-.+++.+.
T Consensus 142 tE~ld~~~~qy~~Dlisw----------~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH 207 (356)
T PRK12822 142 TEFLDTTSFPYIADLICW----------GAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPH 207 (356)
T ss_pred EeecccccHHHHHHHHHh----------hhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCC
Confidence 732 22333333444422 2336 456666777899999999988877788888877777776554
No 459
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.69 E-value=6.4e+02 Score=24.33 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=78.9
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEecc-----C-C----chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVG-----R-N----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG-----~-~----~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
.+.|.+.+.+.|+++++.|++.+..-.- + + .++.++.++.+.+. -++.+..+.....+.+.+.+++
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~-~Gl~~~te~~d~~~~~~l~~~v--- 111 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDK-YNLPVVTEVMDTRDVEEVADYA--- 111 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHH-cCCCEEEeeCChhhHHHHHHhC---
Confidence 3467888889999999999986554421 1 1 23444445444432 3567777776666655443332
Q ss_pred hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC-CHHHHHHH----HHcCCCcEEEeCCC---Ccc-HH
Q 014285 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR-SLNDVQKV----MQENLASVVNIKLA---KFG-VL 341 (427)
Q Consensus 271 ~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~-~~~~~~~l----l~~~a~~~i~lk~~---~~G-i~ 341 (427)
+. .+|=--. -.|.+-+++++ +++.||.+--... +.+++..+ ...+..+++.+.-+ ..+ -.
T Consensus 112 -d~----~kIga~~-~~n~~LL~~~a-----~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~ 180 (266)
T PRK13398 112 -DM----LQIGSRN-MQNFELLKEVG-----KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTR 180 (266)
T ss_pred -CE----EEECccc-ccCHHHHHHHh-----cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCH
Confidence 21 1111111 12344455554 5889998877655 77776433 34455676665531 223 11
Q ss_pred ---HHHHHHHHHHHcCCcEEE
Q 014285 342 ---GTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 342 ---~~~~~~~~A~~~gi~~~~ 359 (427)
....+..+-+..++++.+
T Consensus 181 ~~vdl~~i~~lk~~~~~pV~~ 201 (266)
T PRK13398 181 NTLDLAAVAVIKELSHLPIIV 201 (266)
T ss_pred HHHHHHHHHHHHhccCCCEEE
Confidence 233333333445899988
No 460
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.48 E-value=7.5e+02 Score=25.05 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecc-----C----Cc-hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVG-----R----NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG-----~----~~-~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
.+.+.+.+.|+.+.+.|.+.++--.- + .+ .+.++.++.+.+. -++.+..+.....+.+.+.+++..
T Consensus 129 E~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~-~Gl~~~t~v~d~~~~~~l~~~vd~--- 204 (360)
T PRK12595 129 ESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADE-YGLAVISEIVNPADVEVALDYVDV--- 204 (360)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHH-cCCCEEEeeCCHHHHHHHHHhCCe---
Confidence 46777888888988889876662110 0 11 2334444444332 246667766555554443333111
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCC-CCHHHHHHHH----HcCCCcEEEeCCCCc-----c--H
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC-RSLNDVQKVM----QENLASVVNIKLAKF-----G--V 340 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~-~~~~~~~~ll----~~~a~~~i~lk~~~~-----G--i 340 (427)
.+|=--. -.|++-+.+++ +++.||.+---. .+++++..++ +.+..+++.+.-+.. | -
T Consensus 205 -----lkI~s~~-~~n~~LL~~~a-----~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ 273 (360)
T PRK12595 205 -----IQIGARN-MQNFELLKAAG-----RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNT 273 (360)
T ss_pred -----EEECccc-ccCHHHHHHHH-----ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCC
Confidence 1221111 12455555555 578899887765 5888774433 455567777762221 2 1
Q ss_pred HHHHHHHHHHHHcCCcEEEc
Q 014285 341 LGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 341 ~~~~~~~~~A~~~gi~~~~~ 360 (427)
.....+..+-+..++++...
T Consensus 274 ldl~~i~~lk~~~~~PV~~d 293 (360)
T PRK12595 274 LDISAVPILKQETHLPVMVD 293 (360)
T ss_pred cCHHHHHHHHHHhCCCEEEe
Confidence 23444455555689998883
No 461
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=23.87 E-value=38 Score=33.60 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=32.0
Q ss_pred heeccccccceeeeccccccccccccCCcceeeEEE
Q 014285 34 FCVSNVMAETTTVRTSERTSLGFKNLTETFWVDVQR 69 (427)
Q Consensus 34 ~~~~~~~~~~~~f~~~~~ts~g~~~~~~~~~~~I~~ 69 (427)
.|+.++.++.+.|++|=.||+|.++.++++.++++.
T Consensus 2 ~~~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~ 37 (320)
T PRK02714 2 NYRFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTD 37 (320)
T ss_pred ceEEEEEEEEEecCCceEeccceEEEeEEEEEEEEe
Confidence 467788999999999999999999999999888873
No 462
>PRK08005 epimerase; Validated
Probab=23.82 E-value=6e+02 Score=23.66 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=86.7
Q ss_pred eecCCCHHHHHHHHHHHhhcCCcEEEEec--c---CCchhhHHHHHHHHHhC--C-CcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 199 TIPAVSPAEASELASKYCKLGFSTLKLNV--G---RNITADFDVLQAIHAVH--P-HCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKi--G---~~~~~d~~~l~~ir~~~--~-~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
++-..++..+.++++++.+.|...+-+.+ | +++.-..+.++++|+.. | |+-|||. +|+. +++.+
T Consensus 6 Sil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~-----~P~~---~i~~~ 77 (210)
T PRK08005 6 SLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVS-----SPQR---WLPWL 77 (210)
T ss_pred ehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccC-----CHHH---HHHHH
Confidence 34345677888889999888988888887 3 24444567788888742 2 5666665 4766 55555
Q ss_pred hhCCCC--CceEeCCCCCCChh-hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc-CCCcEEEeCCCCcc---HHHH
Q 014285 271 NDMGVI--PVLFEQPVHRDDWS-GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAKFG---VLGT 343 (427)
Q Consensus 271 ~~~~l~--~~~iEqP~~~~d~~-~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~-~a~~~i~lk~~~~G---i~~~ 343 (427)
.+.+.. ..-+|-. .+.. .++.+++ .....-||+.=. +....++.++.. ..+-+....|..-| +..+
T Consensus 78 ~~~gad~It~H~Ea~---~~~~~~l~~Ik~---~G~k~GlAlnP~-Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~ 150 (210)
T PRK08005 78 AAIRPGWIFIHAESV---QNPSEILADIRA---IGAKAGLALNPA-TPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAM 150 (210)
T ss_pred HHhCCCEEEEcccCc---cCHHHHHHHHHH---cCCcEEEEECCC-CCHHHHHHHHHhcCEEEEEEecCCCccceecHHH
Confidence 544321 0124532 2232 3333432 123344555433 455666666642 33445566898887 3445
Q ss_pred HHHHHHHHHcC--CcEEEcccCchhHHHHHHHHHH
Q 014285 344 LQIIKATRKSG--LHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 344 ~~~~~~A~~~g--i~~~~~s~~es~ig~~a~~hla 376 (427)
++=++.+++.. ..+++ ++||......+++
T Consensus 151 ~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~ 181 (210)
T PRK08005 151 CEKVSQSREHFPAAECWA----DGGITLRAARLLA 181 (210)
T ss_pred HHHHHHHHHhcccCCEEE----ECCCCHHHHHHHH
Confidence 44444444332 23444 4455544444544
No 463
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=23.81 E-value=5.7e+02 Score=23.93 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=53.1
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HH-------HHHHHHHHHHHcCCcEEEc
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL-------GTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~-------~~~~~~~~A~~~gi~~~~~ 360 (427)
.+.++.|.+ .+ .+++|.--.+...+..+.. ..+|+|-+|.+.+- +. -...++.+|+..|+.++..
T Consensus 143 ~~~~~~l~~-----~~-~laLDDfG~g~s~l~~L~~-l~~d~IKiD~~~i~~i~~~~~~~~~~~~lv~~a~~~~~~viAe 215 (255)
T PRK11596 143 DSPFASMCE-----FG-PLWLDDFGTGMANFSALSE-VRYDYIKVARELFIMLRQSEEGRNLFSQLLHLMNRYCRGVIVE 215 (255)
T ss_pred HHHHHHHHH-----cC-CEEEecCCCCHHHHHHHHh-CCCCEEEECHHHHHhhhcChhhHHHHHHHHHHHHHcCCeEEEE
Confidence 345666653 33 7999987777777665554 46999999875442 22 2456689999999998887
Q ss_pred ccCchhHHHHHHHHHHhhcCC
Q 014285 361 GMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 361 s~~es~ig~~a~~hlaaal~~ 381 (427)
+ +|+. .-..++..+|.
T Consensus 216 G-VEt~----eq~~~l~~lG~ 231 (255)
T PRK11596 216 G-VETP----EEWRDVQRSPA 231 (255)
T ss_pred e-CCCH----HHHHHHHHCCC
Confidence 5 5663 33444444443
No 464
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.75 E-value=4.5e+02 Score=25.95 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHHhhcCCcEEEEeccC-------------CchhhHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 211 LASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHAVHP-HCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-------------~~~~d~~~l~~ir~~~~-~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
.++++.+.|.+.+-+-+.. ++++-++.++.+++.+- .+.+..=...+.+.++..++++.+.++++.
T Consensus 106 ~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~ 185 (329)
T PRK13361 106 FAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD 185 (329)
T ss_pred HHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe
Confidence 4556667777777666531 23444555566666543 455543334556778888888888888876
Q ss_pred CceEeCCCC
Q 014285 277 PVLFEQPVH 285 (427)
Q Consensus 277 ~~~iEqP~~ 285 (427)
+.++| .+|
T Consensus 186 ~~~ie-~mP 193 (329)
T PRK13361 186 IAFIE-EMP 193 (329)
T ss_pred EEEEe-ccc
Confidence 55555 444
No 465
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=23.59 E-value=2.9e+02 Score=27.91 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC-----chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN-----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~-----~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A 263 (427)
+++++.+.++...+.|.+.|-+=-|.+ ++.=.+.++.+++.+|++.+- .+ ..+.+++
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Ie--i~-~lt~e~~ 165 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIE--VQ-PLNEEEY 165 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccc--cc-cCCHHHH
Confidence 788898999988899999888876642 233355677777777766543 33 4676664
No 466
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=23.29 E-value=3.4e+02 Score=27.44 Aligned_cols=75 Identities=12% Similarity=0.253 Sum_probs=47.1
Q ss_pred CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC--C--C-ccHHHHHHHHHHHH--HcCCcEEE
Q 014285 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL--A--K-FGVLGTLQIIKATR--KSGLHLMI 359 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~--~--~-~Gi~~~~~~~~~A~--~~gi~~~~ 359 (427)
..|+.++++++ .+++||..=|- .+.+|.+++.+.+ +++|.+-- . . .|+.....+.++.+ ...++++.
T Consensus 212 ~~w~~i~~~~~----~~~~pvivKgv-~~~~da~~~~~~G-~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~ 285 (356)
T PF01070_consen 212 LTWDDIEWIRK----QWKLPVIVKGV-LSPEDAKRAVDAG-VDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIA 285 (356)
T ss_dssp -SHHHHHHHHH----HCSSEEEEEEE--SHHHHHHHHHTT--SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHhc----ccCCceEEEec-ccHHHHHHHHhcC-CCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEE
Confidence 36888888886 78999999877 8899999999876 77755431 0 1 13333333334443 34699999
Q ss_pred cccCchhH
Q 014285 360 DGMIETRL 367 (427)
Q Consensus 360 ~s~~es~i 367 (427)
.+-+-++.
T Consensus 286 dgGir~g~ 293 (356)
T PF01070_consen 286 DGGIRRGL 293 (356)
T ss_dssp ESS--SHH
T ss_pred eCCCCCHH
Confidence 88776653
No 467
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=23.18 E-value=1.1e+02 Score=30.82 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=45.8
Q ss_pred CCcEEEEeCC---CCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 246 PHCSFILDAN---EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 246 ~~~~L~vDAN---~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
+|+...+=++ ...-.+-|++.+ +.|.| .++|.|+..++.+.+.++++ +.++.++..........++++
T Consensus 63 ~Di~~V~ipt~~P~~~H~e~a~~aL----~aGkH-VL~EKPla~~Ea~el~~~A~----~~g~~l~v~~f~p~~~~vr~~ 133 (343)
T TIGR01761 63 IDIACVVVRSAIVGGQGSALARALL----ARGIH-VLQEHPLHPRDIQDLLRLAE----RQGRRYLVNTFYPHLPAVRRF 133 (343)
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHH----hCCCe-EEEcCCCCHHHHHHHHHHHH----HcCCEEEEEecCHHHHHHHHH
Confidence 4554444332 234445444443 35777 59999998666666666665 568888887655556667888
Q ss_pred HHcC
Q 014285 323 MQEN 326 (427)
Q Consensus 323 l~~~ 326 (427)
++.+
T Consensus 134 i~~~ 137 (343)
T TIGR01761 134 IEYA 137 (343)
T ss_pred HHcc
Confidence 8765
No 468
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=23.06 E-value=2.5e+02 Score=27.94 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccC--------CchhhHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHH
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAVH--PHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~~ir~~~--~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
.+...+..+.+...||+ +..|. .-..+.+|++.+.+++ +++++++.+-|+|...+-+.++.
T Consensus 25 ~~~~~~a~~~L~~~G~~---v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld 95 (313)
T COG1619 25 TDALKRAIQRLENLGFE---VVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLD 95 (313)
T ss_pred HHHHHHHHHHHHHcCCE---EEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcc
Confidence 44445556667778964 44442 1245788999999965 78999999999999877666665
No 469
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=22.71 E-value=4.1e+02 Score=25.26 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=68.4
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCch---hhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNIT---ADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~---~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (427)
|++.-+...+.++|.++++++.+.|- -+=+||-...+ .-++.++.+++.| +++-+-.-||+.||...++++.
T Consensus 60 ~vs~EV~~~d~~~m~~eA~~l~~~~~-nv~VKIP~T~~~G~~~l~ai~~L~~~G----I~vn~T~vfs~~Qa~~aa~A~~ 134 (236)
T TIGR02134 60 PISFEVFADDLDEMEKEARYIASWGN-NVNVKIPVTNTKGESTGPLIQKLSADG----ITLNVTALTTIEQVEKVCQSFT 134 (236)
T ss_pred cEEEEEecCCHHHHHHHHHHHHhcCC-CeEEEECCcCcccchHHHHHHHHHHCC----CcEEeehcCCHHHHHHHHHHHh
Confidence 34444556789999999999877763 35566643211 2255555555543 4444555899999887666543
Q ss_pred hCCCCCceEeCCCC-------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 272 DMGVIPVLFEQPVH-------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 272 ~~~l~~~~iEqP~~-------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.- .. .|+ -|+- .|-..-++++++.++...+..|.+ =|+.+..++.++...+ +|++-+-+
T Consensus 135 aG-~a-~yi-spfvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILa-AS~R~~~~v~~a~~~G-ad~vTvp~ 200 (236)
T TIGR02134 135 DG-VP-GIV-SVFAGRIADTGVDPEPHMREALEIVAQKPGVELLW-ASPRELFNIIQADRIG-CDIITCAH 200 (236)
T ss_pred CC-CC-eEE-EEecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEE-EccCCHHHHHHHHHcC-CCEEECCH
Confidence 31 00 011 1110 111222333332222223333322 1677777777776654 66655544
No 470
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.65 E-value=4.3e+02 Score=25.38 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=41.0
Q ss_pred HHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 211 LASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
-+++..+.||+.+=+-+-. .+|.+.++.+.+ .++++-+..=-+.+.+.++|..+++..
T Consensus 154 Gv~kAie~Gyk~IaVTV~~--~~~A~~iRele~~~~~~~~if~VHtTGis~eeA~~l~~~~ 212 (258)
T PF09872_consen 154 GVKKAIEMGYKRIAVTVAD--AEDAKKIRELEKEEGVNIYIFGVHTTGISEEEAERLFEYA 212 (258)
T ss_pred HHHHHHHcCCceEEEEecC--HHHHHHHHHhhccCCCceEEEEEEccCCCHHHHHHHHHHh
Confidence 3566778999988887753 346666666655 466766666667889999998776643
No 471
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.52 E-value=6.9e+02 Score=23.96 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEE--eCC-CCCC-HHHHHHHHHHhhhCCCCCc
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFIL--DAN-EGYT-SEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~v--DAN-~~~s-~~~A~~~l~~L~~~~l~~~ 278 (427)
+.++..+.++.+.+.|++.|-+-.+..-..|.+.++.+++.. ++.++.+ .++ ..+. +.+ +.++.+.+.++...
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~a~~~g~~~i 95 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEED--PNLQALLEAGTPVV 95 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccch--HHHHHHHhCCCCEE
Confidence 577778888899999999988844332356777788888753 3444433 222 1111 111 23344444454322
Q ss_pred eEeCCCCC------------CChhhHHHHHHhhccccCCeEEe------cCCCCCHHHH----HHHHHcCCCcEEEe-CC
Q 014285 279 LFEQPVHR------------DDWSGLHDVSNFARDTYGISVVA------DESCRSLNDV----QKVMQENLASVVNI-KL 335 (427)
Q Consensus 279 ~iEqP~~~------------~d~~~~~~L~~~~r~~~~iPIa~------dE~~~~~~~~----~~ll~~~a~~~i~l-k~ 335 (427)
.+--|... +.++.+.++.+.++ ..+..+.. |-.-.+...+ +++.+.+ ++.|.+ |.
T Consensus 96 ~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g-~~~i~l~DT 173 (273)
T cd07941 96 TIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLK-SHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWLVLCDT 173 (273)
T ss_pred EEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC-CCEEEEecC
Confidence 34444321 12233334333332 34666644 2123344444 3334444 555555 44
Q ss_pred CCcc-HHHHHHHHHHHHH-cC-CcEEEcccCchhHHHH
Q 014285 336 AKFG-VLGTLQIIKATRK-SG-LHLMIDGMIETRLATG 370 (427)
Q Consensus 336 ~~~G-i~~~~~~~~~A~~-~g-i~~~~~s~~es~ig~~ 370 (427)
.-.. .....++++..++ .+ +++.+|+-...+++++
T Consensus 174 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~A 211 (273)
T cd07941 174 NGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVA 211 (273)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHH
Confidence 3232 4455666655543 45 7788887544444433
No 472
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=22.51 E-value=6.1e+02 Score=24.95 Aligned_cols=68 Identities=19% Similarity=0.355 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCC-chhh-HHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRN-ITAD-FDVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-~~~d-~~~l~~ir~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
.+.+++.+.++...+.|.+.|.+--|-. +..| .+.++.+++. +++ .+.+-.||.+..+ .++.|.+.++
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~-~gi~~v~itTNG~ll~~----~~~~L~~~gl 113 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAAL-PGIEDIALTTNGLLLAR----HAKDLKEAGL 113 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhc-CCCCeEEEEeCchhHHH----HHHHHHHcCC
Confidence 3678887778888788988887766632 2223 3455556553 345 7899999976543 4455555544
No 473
>PRK14863 bifunctional regulator KidO; Provisional
Probab=22.45 E-value=3.1e+02 Score=26.70 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=46.1
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHH-HHHHHHHHHHHcCCcEEEcccCchh
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~-~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
++.|.+|.+ .+.==..|=|.++..++..+.....++++|+..+.+--. +..++..+|+++|+.++..+.+.+|
T Consensus 124 ~~~l~~l~~-----~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G 197 (292)
T PRK14863 124 WERLQALKD-----QGLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNG 197 (292)
T ss_pred HHHHHHHHH-----cCCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCc
Confidence 455666653 232223344556777777777777788999887665211 1125788999999999877665443
No 474
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.18 E-value=5.5e+02 Score=22.70 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCC
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~ 284 (427)
.+-+....+...+.|.+.+=+ |...+.-.+..+.+++.+|++.+.--.++-+..++..+.++.+.+.+-.+.|+==..
T Consensus 32 ~dl~~~ll~~~~~~~~~v~ll--G~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLL--GAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 333444445544556655544 544333334456788889999998888888887776677888877765556777666
Q ss_pred CC
Q 014285 285 HR 286 (427)
Q Consensus 285 ~~ 286 (427)
|.
T Consensus 110 Pk 111 (171)
T cd06533 110 PK 111 (171)
T ss_pred CH
Confidence 64
No 475
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=21.96 E-value=6.7e+02 Score=25.64 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=42.8
Q ss_pred ccccC-CeEEecCCCC-CHHHHHHHHHcCCCcEEEeCCCC-------------cc---HHHHHHHHHHHHHc----CCcE
Q 014285 300 RDTYG-ISVVADESCR-SLNDVQKVMQENLASVVNIKLAK-------------FG---VLGTLQIIKATRKS----GLHL 357 (427)
Q Consensus 300 r~~~~-iPIa~dE~~~-~~~~~~~ll~~~a~~~i~lk~~~-------------~G---i~~~~~~~~~A~~~----gi~~ 357 (427)
|+.++ .||..-+... +..++.++++...+|+|.++-.- +| +....++.+.+.+. .+++
T Consensus 209 r~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~v 288 (392)
T cd02808 209 REATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSL 288 (392)
T ss_pred HHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeE
Confidence 33455 7887766554 77788888888779999988753 23 11223344444443 5788
Q ss_pred EEcccCchhH
Q 014285 358 MIDGMIETRL 367 (427)
Q Consensus 358 ~~~s~~es~i 367 (427)
+..+-+-++-
T Consensus 289 iasGGI~~g~ 298 (392)
T cd02808 289 IASGGLRTGA 298 (392)
T ss_pred EEECCCCCHH
Confidence 8877665543
No 476
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=21.96 E-value=7.5e+02 Score=25.37 Aligned_cols=58 Identities=9% Similarity=-0.017 Sum_probs=39.5
Q ss_pred CCeEEecCCCCC---HHHHHHHHHcCCCcEEEeCC-CCc-cHHHHHHHHHHHHHcCCcEEEcc
Q 014285 304 GISVVADESCRS---LNDVQKVMQENLASVVNIKL-AKF-GVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 304 ~iPIa~dE~~~~---~~~~~~ll~~~a~~~i~lk~-~~~-Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
.+-|..|+++.. ...+.+.++....++...+- ... .+....+.++.+++.+..++++-
T Consensus 25 ~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (414)
T cd08190 25 RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAV 87 (414)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 456777887654 35566677665566665532 222 36778899999999999998753
No 477
>PRK07360 FO synthase subunit 2; Reviewed
Probab=21.63 E-value=6.4e+02 Score=25.47 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=21.2
Q ss_pred CCCccHHHHHHHHHHHHHcCCcEEEcccC
Q 014285 335 LAKFGVLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
|.++-....++.++.|++.|+++..+..+
T Consensus 195 p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 195 PEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 33443556799999999999998765443
No 478
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=21.57 E-value=9.3e+02 Score=25.09 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=82.3
Q ss_pred CceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
.++-+++.++..+.+. ...+.+.+.|-..+-+.... +-.-.++.++.|++.+|+.+++ +..-.|.++|..++.+=
T Consensus 238 kqll~gAaiGTre~dK--~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~Vi--aGNVVT~~qa~nLI~aG 313 (503)
T KOG2550|consen 238 KQLLCGAAIGTRDDDK--ERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQII--AGNVVTKEQAANLIAAG 313 (503)
T ss_pred cceeeeeccccccchh--HHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceee--ccceeeHHHHHHHHHcc
Confidence 3444445555444443 33445667899998888754 3345789999999999986654 45566888888777654
Q ss_pred hh-----CCCCCceEeCCCC---CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 271 ND-----MGVIPVLFEQPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 271 ~~-----~~l~~~~iEqP~~---~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
.+ .+--+..+-|-+- ..+-...-+.++.+ .+.++||.+|--+.+.....+++..++
T Consensus 314 aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A-~q~gvpviADGGiq~~Ghi~KAl~lGA 377 (503)
T KOG2550|consen 314 ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFA-NQFGVPCIADGGIQNVGHVVKALGLGA 377 (503)
T ss_pred CceeEeccccCceeeeceeeeccCCcccchhhHHHHH-HhcCCceeecCCcCccchhHhhhhcCc
Confidence 33 1111235555321 11222222233222 268999999999999999888887765
No 479
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.52 E-value=5.9e+02 Score=24.01 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHhhh-CCCCCceEe------CCCCCCChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCc
Q 014285 258 YTSEEAVEVLGKLND-MGVIPVLFE------QPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLAS 329 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~-~~l~~~~iE------qP~~~~d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~ 329 (427)
++.++...+...-++ +++++.|+| +|++ .+-.+++++ .+ .+||..|=-+.+.++++++++.+ +|
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~---~e~i~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-AD 203 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP---PELVAEVKK----VLDKARLFVGGGIRSVEKAREMAEAG-AD 203 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC---HHHHHHHHH----HcCCCCEEEecCCCCHHHHHHHHHcC-CC
Confidence 455665555444444 466667999 4444 455566654 34 79999898999999999999765 67
Q ss_pred EEEe
Q 014285 330 VVNI 333 (427)
Q Consensus 330 ~i~l 333 (427)
.+++
T Consensus 204 ~VVV 207 (223)
T TIGR01768 204 TIVT 207 (223)
T ss_pred EEEE
Confidence 7665
No 480
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=21.50 E-value=1e+03 Score=25.47 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEe--CC-CCCC--HHHHHHHHHHhhhCCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILD--AN-EGYT--SEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vD--AN-~~~s--~~~A~~~l~~L~~~~l~~ 277 (427)
+.++..+.++.+.+.|+..|-+-....-..|.+.++.|++.. .+.++..- +. ..+. .+..++. +.+.+...
T Consensus 25 s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~---~~~~g~~~ 101 (524)
T PRK12344 25 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA---LLDAGTPV 101 (524)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH---HHhCCCCE
Confidence 678888888899899999988855332345777788887743 34444332 21 1221 1223333 23323211
Q ss_pred ceEeCCCC---------C---CChhhHHHHHHhhccccCCeEEe------cCCCCCHHHH----HHHHHcCCCcEEEeCC
Q 014285 278 VLFEQPVH---------R---DDWSGLHDVSNFARDTYGISVVA------DESCRSLNDV----QKVMQENLASVVNIKL 335 (427)
Q Consensus 278 ~~iEqP~~---------~---~d~~~~~~L~~~~r~~~~iPIa~------dE~~~~~~~~----~~ll~~~a~~~i~lk~ 335 (427)
.-+--|.. . +.++...+..+.++ +.+..+.. |.+-.++..+ +.+.+.+ ++.+.+.=
T Consensus 102 i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak-~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G-ad~i~l~D 179 (524)
T PRK12344 102 VTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLK-AHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWVVLCD 179 (524)
T ss_pred EEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEccccccccccCCHHHHHHHHHHHHhCC-CCeEEEcc
Confidence 11221221 1 11222222222222 34555544 3233344433 3334444 55555543
Q ss_pred CCcc---HHHHHHHHHHHHH-cCCcEEEcccCchhHHHHH
Q 014285 336 AKFG---VLGTLQIIKATRK-SGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 336 ~~~G---i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a 371 (427)
+. | .....++++..++ .++++.+|+-...|++.+.
T Consensus 180 Tv-G~~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~AN 218 (524)
T PRK12344 180 TN-GGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVAN 218 (524)
T ss_pred CC-CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 32 5 4455666665444 4889999987666655543
No 481
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.48 E-value=5.7e+02 Score=26.67 Aligned_cols=135 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhc--CCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 014285 204 SPAEASELASKYCKL--GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~--Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (427)
+++.+.++++.+.+. |.+.|-+ .+..+-.+.+++..+-+...+..+...++...+.++ +.++.|++.|.. .+.
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f-~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~--e~l~~l~~aG~~--~v~ 302 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFF-DDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDY--ETLKVMKENGLR--LLL 302 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEE-eCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCH--HHHHHHHHcCCC--EEE
Q ss_pred CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-c-----HHHHHHHHHHHHHcCC
Q 014285 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G-----VLGTLQIIKATRKSGL 355 (427)
Q Consensus 282 qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-G-----i~~~~~~~~~A~~~gi 355 (427)
=.+-..+-+.++.+.+ -.+..+..+.++.-.-..+.+....+ | .....+.++.+.+.++
T Consensus 303 iGiES~s~~~L~~~~K---------------~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~ 367 (472)
T TIGR03471 303 VGYESGDQQILKNIKK---------------GLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNP 367 (472)
T ss_pred EcCCCCCHHHHHHhcC---------------CCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q ss_pred cEE
Q 014285 356 HLM 358 (427)
Q Consensus 356 ~~~ 358 (427)
...
T Consensus 368 ~~~ 370 (472)
T TIGR03471 368 HTI 370 (472)
T ss_pred Cce
No 482
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.46 E-value=6.5e+02 Score=25.36 Aligned_cols=110 Identities=8% Similarity=-0.028 Sum_probs=59.3
Q ss_pred CCeEEecCCCCC---HHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 304 GISVVADESCRS---LNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 304 ~iPIa~dE~~~~---~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
.+-|..|+++.. ...+...|+...+++.+.+-.. .= .....+.++.+++++..++++- ++|-.+.++=-++..
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai--GGGS~~D~AKaia~~ 102 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIAL--GGGSPIDTAKAIAVL 102 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe--CCchHHHHHHHHHHH
Confidence 455777887653 2446677766566666654322 11 6668889999999999998853 232222222112221
Q ss_pred cCCc-ceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCC
Q 014285 379 LGCI-KYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423 (427)
Q Consensus 379 l~~~-~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~ 423 (427)
+.+. ...++.. ...... ..=-.+.+|+.+|.|-|++.
T Consensus 103 ~~~~~~~~~~~~-----~~~~~~---~~~P~i~IPTtagtGsE~t~ 140 (375)
T cd08194 103 ATNGGSIRDYKG-----PRIVDK---PGLPLIAIPTTAGTGSEVTR 140 (375)
T ss_pred HhCCCCHHHHhC-----cccccC---CCCCEEEECCCCccccccCC
Confidence 1111 1111111 011100 01136889999999999764
No 483
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.45 E-value=6.7e+02 Score=25.61 Aligned_cols=111 Identities=11% Similarity=0.008 Sum_probs=60.3
Q ss_pred CeEEecCCCCC---HHHHHHHHHcCCCcEEEeCCCC-c-cHHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 305 ISVVADESCRS---LNDVQKVMQENLASVVNIKLAK-F-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 305 iPIa~dE~~~~---~~~~~~ll~~~a~~~i~lk~~~-~-Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
+=|..|.++.. ..++.+.|+...+.+...+-.. - -+....+.++.+++.+..++++---.|.+-.+=++.+...-
T Consensus 52 ~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~ 131 (395)
T PRK15454 52 LFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTN 131 (395)
T ss_pred EEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhC
Confidence 34566776543 3567777877667776654222 1 25668899999999999999864323333222111121111
Q ss_pred CCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCC
Q 014285 380 GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWT 424 (427)
Q Consensus 380 ~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~ 424 (427)
+...+-++... ....+ .=-.+.+|+.+|-|-|++.-
T Consensus 132 ~~~~~~~~~~~------~~~~~---~~P~iaIPTtaGTGSE~t~~ 167 (395)
T PRK15454 132 PDSTLAEMSET------SVLQP---RLPLIAIPTTAGTGSETTNV 167 (395)
T ss_pred CCccHHHHhcc------cccCC---CCCEEEECCCCcchhhhCCe
Confidence 11111111111 11111 01368899999999998753
No 484
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=21.16 E-value=1.5e+02 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=28.0
Q ss_pred CcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEc
Q 014285 328 ASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 328 ~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (427)
.|+..+++.. | ..+.+++++.|+++||++++-
T Consensus 39 ~d~~~vd~~~-Gt~~d~~~Lv~~~h~~gi~VilD 71 (316)
T PF00128_consen 39 SDYYAVDPRF-GTMEDFKELVDAAHKRGIKVILD 71 (316)
T ss_dssp SEEEEESTTT-BHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eeeecccccc-chhhhhhhhhhccccccceEEEe
Confidence 5788899855 8 999999999999999999864
No 485
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.93 E-value=8.9e+02 Score=24.62 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhC-----CCcEEEEeCCCCCC-----HHHHHHHHHHhhhC--CCCCceEe-CCCCCCChhhHHHHHHh
Q 014285 232 TADFDVLQAIHAVH-----PHCSFILDANEGYT-----SEEAVEVLGKLNDM--GVIPVLFE-QPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 232 ~~d~~~l~~ir~~~-----~~~~L~vDAN~~~s-----~~~A~~~l~~L~~~--~l~~~~iE-qP~~~~d~~~~~~L~~~ 298 (427)
++|++.-++|.+.+ ++..+.-=+|.++= ...|+..++.+.+. .++..-.| .|..++.--.-.+|.
T Consensus 147 ~ed~~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~-- 224 (363)
T PRK05772 147 EEEYDAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELM-- 224 (363)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHH--
Confidence 45666555565532 45567878887641 23455555554433 34432334 444332101113454
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc---c-H---HHHHHHHHHHHHcCCcEEEcc
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF---G-V---LGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~---G-i---~~~~~~~~~A~~~gi~~~~~s 361 (427)
+.+||+.+ +.-...-.++..+.+|.+.+-.-.+ | + .++..++-+|+.+|+|+++-+
T Consensus 225 ---~~GIpvtl----I~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~a 287 (363)
T PRK05772 225 ---EEGIKVTL----ITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALA 287 (363)
T ss_pred ---HCCCCEEE----EehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEc
Confidence 46888864 4444555666666788888855433 5 3 468889999999999998754
No 486
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=20.82 E-value=1.9e+02 Score=28.83 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=36.3
Q ss_pred EecCCCCCHHHHHHHHH---cC--CCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchh
Q 014285 308 VADESCRSLNDVQKVMQ---EN--LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 308 a~dE~~~~~~~~~~ll~---~~--a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
+.|=|-.+...++.+.+ .. .+.++|+.-+.+- -.+...++..|+++||.++..+.+..|
T Consensus 164 ~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G 228 (346)
T PRK09912 164 YVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQG 228 (346)
T ss_pred EEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCc
Confidence 44545666666654332 21 3456777666543 222345889999999999988766543
No 487
>COG2403 Predicted GTPase [General function prediction only]
Probab=20.74 E-value=2.4e+02 Score=28.98 Aligned_cols=60 Identities=15% Similarity=0.310 Sum_probs=49.6
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
-.++||-.+++ ..++.++++...+|.++++.|-+-...-.+++...-+.|..+|..+..+
T Consensus 60 p~Gvpi~~~k~---~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~e 119 (449)
T COG2403 60 PLGVPILPEKD---YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKE 119 (449)
T ss_pred cCCcccccccc---HHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCccH
Confidence 46899998877 6788999999999999999888767777888888889999988765443
No 488
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.63 E-value=5.2e+02 Score=26.10 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCeEEecCCCCC---HHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCcEEEc
Q 014285 304 GISVVADESCRS---LNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 304 ~iPIa~dE~~~~---~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~~~~ 360 (427)
.+-|..|+++.. ...+...++...+.+.+.+-.. .= +....+.++.+++++..++++
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 92 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIA 92 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 456777887653 3456777776666666664222 22 677889999999999999885
No 489
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=20.51 E-value=2.2e+02 Score=29.62 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCc----------EEEeCC
Q 014285 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLAS----------VVNIKL 335 (427)
Q Consensus 266 ~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~----------~i~lk~ 335 (427)
.++.+-..+=+ ..||++.-+..++.|+.+- -.-|||..|+.-+.++.+++.++.-.+. |-++--
T Consensus 140 ~l~~~~N~gd~-vlie~~ty~~AL~s~~a~g-----v~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTg 213 (472)
T KOG0634|consen 140 VLRTLINRGDH-VLIEEYTYPSALQSMEALG-----VKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTG 213 (472)
T ss_pred HHHHhhcCCCc-eEEecccchHHHHhccccC-----ceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCC
Confidence 44555555544 4899998766666666553 2458999999999999999999876555 111111
Q ss_pred -CCcc----HHHHHHHHHHHHHcCCcEEEcc
Q 014285 336 -AKFG----VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 336 -~~~G----i~~~~~~~~~A~~~gi~~~~~s 361 (427)
.-.| ....+++.++|+++++-++-.-
T Consensus 214 qNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 214 QNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 1125 3357899999999999887543
No 490
>PRK15029 arginine decarboxylase; Provisional
Probab=20.38 E-value=7.6e+02 Score=27.83 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHhhcCCcE---EEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 014285 202 AVSPAEASELASKYCKLGFST---LKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~---iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (427)
+.+|+...++++++.++=|.+ +=+=-|. -......+.. ..++-.+.||=|.-=|.-.|+.+ .+..+
T Consensus 200 L~~p~G~I~eAq~~aA~~fgA~~t~FlvNGS----T~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L------~ga~P 269 (755)
T PRK15029 200 LLDHTGAFGESEKYAARVFGADRSWSVVVGT----SGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLIL------TGAKP 269 (755)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCcEEEEeCCh----hHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH------cCCeE
Confidence 345666666666655543322 2121221 1222233444 34666888999988665444433 34455
Q ss_pred ceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC-C---------cEEEeCCCCcc-HHHHHHH
Q 014285 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL-A---------SVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 278 ~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a-~---------~~i~lk~~~~G-i~~~~~~ 346 (427)
.|+ .|-. . ..+++-....+..+.+++++.++... . -++..-|+.-| .....++
T Consensus 270 vyl-~P~~-~--------------~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I 333 (755)
T PRK15029 270 VYM-VPSR-N--------------RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEA 333 (755)
T ss_pred EEe-cccc-c--------------ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHH
Confidence 687 4432 1 24555444555567788877775431 1 25666899999 8899999
Q ss_pred HHHHHHcCCcEEEcccC
Q 014285 347 IKATRKSGLHLMIDGMI 363 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~ 363 (427)
++.|+++|+++.+-.++
T Consensus 334 ~~~~h~~~~~llvDEAh 350 (755)
T PRK15029 334 QDLLEKTSDRLHFDEAW 350 (755)
T ss_pred HHHHHhcCCeEEEECcc
Confidence 99999999999876543
No 491
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.28 E-value=7.4e+02 Score=23.40 Aligned_cols=167 Identities=12% Similarity=0.086 Sum_probs=91.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEec--c---CCchhhHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNV--G---RNITADFDVLQAIHAVHP-HCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKi--G---~~~~~d~~~l~~ir~~~~-~~~L~vDAN~~~s~~~A~~~l 267 (427)
.++..++-..++..+.++++++.+.|-..+-+.+ | +++.-....++++|+..| |+-|||. +|++ ++
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~~~DvHLMv~-----~P~~---~i 84 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHCFKDVHLMVR-----DQFE---VA 84 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCCCCCEEEEeccC-----CHHH---HH
Confidence 3444555556778888899999888988888877 4 244445667788876333 6777776 4665 55
Q ss_pred HHhhhCCCC--CceEeCCCCCCCh-hhHHHHHHhhcccc--CCeEEecCCCCCHHHHHHHHHc-CCCcEEEeCCCCcc--
Q 014285 268 GKLNDMGVI--PVLFEQPVHRDDW-SGLHDVSNFARDTY--GISVVADESCRSLNDVQKVMQE-NLASVVNIKLAKFG-- 339 (427)
Q Consensus 268 ~~L~~~~l~--~~~iEqP~~~~d~-~~~~~L~~~~r~~~--~iPIa~dE~~~~~~~~~~ll~~-~a~~~i~lk~~~~G-- 339 (427)
+.+.+.+.. ..-+|.. .+. +.+.++++. .. ..-||+.=. +.+..++.++.. ..+-+...+|..-|
T Consensus 85 ~~~~~aGad~It~H~Ea~---~~~~~~l~~Ik~~---g~~~kaGlalnP~-Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~ 157 (228)
T PRK08091 85 KACVAAGADIVTLQVEQT---HDLALTIEWLAKQ---KTTVLIGLCLCPE-TPISLLEPYLDQIDLIQILTLDPRTGTKA 157 (228)
T ss_pred HHHHHhCCCEEEEcccCc---ccHHHHHHHHHHC---CCCceEEEEECCC-CCHHHHHHHHhhcCEEEEEEECCCCCCcc
Confidence 555554422 1125643 123 233444431 12 234455432 466677777753 23444556888877
Q ss_pred HH-HHH----HHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 340 VL-GTL----QIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 340 i~-~~~----~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
+. .++ ++.++-+++|..+.+. .++||.......++.
T Consensus 158 f~~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI~~~ti~~l~~ 198 (228)
T PRK08091 158 PSDLILDRVIQVENRLGNRRVEKLIS--IDGSMTLELASYLKQ 198 (228)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEE--EECCCCHHHHHHHHH
Confidence 43 333 3333444556553332 244555444445443
No 492
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.27 E-value=4.5e+02 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHcCCcEEEcccC
Q 014285 339 GVLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 339 Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
.....++.++.|++.|+++..+.++
T Consensus 179 s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 179 SSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred CHHHHHHHHHHHHHcCCCccceeEe
Confidence 3667789999999999998765443
No 493
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=20.12 E-value=3.1e+02 Score=24.39 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 318 DVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 318 ~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
.+.++++.+ ++.+|+...... ...+.++.++|+++++++++++..
T Consensus 17 ~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~ 65 (180)
T PF02581_consen 17 QLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRV 65 (180)
T ss_dssp HHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H
T ss_pred HHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCH
Confidence 356777776 999999765542 445788999999999999999843
No 494
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.09 E-value=66 Score=27.18 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=31.5
Q ss_pred ccccccccccccccccchhhheeccccccceeeeccccccccccccCCcceeeEEEEE
Q 014285 14 NFFFSPCVSRSLHRSQNVIKFCVSNVMAETTTVRTSERTSLGFKNLTETFWVDVQRAE 71 (427)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ts~g~~~~~~~~~~~I~~i~ 71 (427)
-|.||-|..-+-+|+. + .-+||.|++.++.-...|+.-+|-+..|+
T Consensus 30 lFLfsD~lEi~kkR~k-v-----------~~~~KSP~~~~~~~~~~KHi~lmpLs~Ik 75 (129)
T cd01229 30 LFLFNDCLEIARKRHK-V-----------IGTFKSPHGSTRPPASLKHIHLMPLSQIK 75 (129)
T ss_pred EEEecchHHHhhhccc-c-----------cCCcCCCCCCCCCCcccceEEEeEhHHeE
Confidence 4788888777667752 2 23488899988876777777666655443
No 495
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.03 E-value=6.2e+02 Score=23.99 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCcEEEccc
Q 014285 341 LGTLQIIKATRKSGLHLMIDGM 362 (427)
Q Consensus 341 ~~~~~~~~~A~~~gi~~~~~s~ 362 (427)
....+++++|+++|+.+.+...
T Consensus 123 ~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 123 EALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHhccCCCCEEEEeCC
Confidence 4467788888889999887653
Done!