BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014286
         (427 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score =  131 bits (330), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 17/270 (6%)

Query: 166 VTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 225
           V ESP WL  +G+  +AE    K++G +    ++ E+      D G       L++G   
Sbjct: 220 VPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH--SLDHGRKTGGRLLMFG--V 275

Query: 226 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVL 282
            V+ IG  L   QQ  GIN + Y++  VFK+ G S+ +A    + VG+ NL  +V+A++ 
Sbjct: 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMT 335

Query: 283 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP 342
           +DK GRK L       MA+ M     A  +  PG  +L      ML +V  FA+  GPV 
Sbjct: 336 VDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL----SMLFYVAAFAMSWGPVC 391

Query: 343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXX------XYSIFGTF 396
            +LL EIFP+ IR KA+A+ ++  W+ N+FV                      Y I+G  
Sbjct: 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451

Query: 397 CLMAVAFVKRNVVETKGKSLQEIEIALLPQ 426
            ++A  F+ + V ETKGK+L+E+E    P+
Sbjct: 452 GVLAALFMWKFVPETKGKTLEELEALWEPE 481



 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 24/152 (15%)

Query: 41  NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL------DLGFNGNTLAEGLVV 94
           NT  +    F   LVATL   LFGY   V++  +ES++       +L  +      G  V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61

Query: 95  SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---------TTRNLIGML 145
           +  L G  IG  L G+ ++  GRR + ++ A+   I    SA            N + + 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121

Query: 146 LG---------RFVVGTGMGLGPTVAALYVTE 168
           L          R + G G+GL   ++ +Y+ E
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153


>pdb|1NSA|A Chain A, Three-Dimensional Structure Of Porcine Procarboxypeptidase
           B: A Structural Basis Of Its Inactivity
          Length = 395

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 309 ASSSYIPGSASLYLSVGGM--------LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA 360
            S SY PGS ++Y + GG         + +  TF L        +LPE   S+I+A    
Sbjct: 323 TSYSYGPGSTTIYPAAGGSDDWAYNQGIKYSFTFELRDKGRFGFVLPE---SQIQATCQE 379

Query: 361 VCMSVHWVINF 371
             ++V +V N+
Sbjct: 380 TMLAVKYVTNY 390


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,650,703
Number of Sequences: 62578
Number of extensions: 398298
Number of successful extensions: 837
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 5
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)