Query 014286
Match_columns 427
No_of_seqs 548 out of 1550
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 08:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 4.1E-40 1.4E-44 312.2 29.4 374 45-426 6-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.5E-31 1.2E-35 248.1 16.4 343 47-407 24-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 7.4E-30 2.5E-34 238.1 25.1 329 51-401 26-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.9E-26 6.6E-31 218.2 17.3 322 81-414 49-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 5.9E-27 2E-31 213.8 3.7 322 54-393 3-362 (375)
6 2cfq_A Lactose permease; trans 99.9 1.6E-25 5.6E-30 206.9 5.9 333 68-415 24-407 (417)
7 2xut_A Proton/peptide symporte 99.9 4.6E-22 1.6E-26 189.7 10.6 95 72-168 33-136 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 2.8E-14 9.5E-19 133.2 14.0 159 243-411 44-210 (451)
9 3o7q_A L-fucose-proton symport 99.5 2.2E-13 7.4E-18 126.6 13.3 158 243-406 42-228 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.5 2.1E-13 7.3E-18 128.7 12.7 154 245-407 32-196 (491)
11 2gfp_A EMRD, multidrug resista 99.4 2.8E-13 9.7E-18 123.1 9.4 161 243-412 16-179 (375)
12 2xut_A Proton/peptide symporte 99.4 4.2E-12 1.5E-16 120.8 14.3 152 246-405 32-196 (524)
13 4gc0_A D-xylose-proton symport 99.0 4.5E-09 1.5E-13 99.0 13.2 119 263-382 59-187 (491)
14 2cfq_A Lactose permease; trans 98.8 1E-10 3.4E-15 107.8 -3.7 170 219-402 3-182 (417)
15 2g9p_A Antimicrobial peptide l 67.5 1.3 4.6E-05 20.4 0.3 14 107-120 2-15 (26)
16 4dve_A Biotin transporter BIOY 36.8 66 0.0023 25.3 5.5 24 95-118 100-123 (198)
17 2dw3_A Intrinsic membrane prot 23.2 1.5E+02 0.0052 18.9 5.3 30 384-413 30-59 (77)
18 1cmk_I CAMP-dependent protein 22.3 15 0.00052 17.8 -0.3 10 112-121 9-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.1e-40 Score=312.18 Aligned_cols=374 Identities=31% Similarity=0.515 Sum_probs=282.2
Q ss_pred CchhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCC------chhHHHHHHHHHHHHHHHHHHhHHhhhcccchh
Q 014286 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118 (427)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr 118 (427)
+.+..+.+.++++++.+++++|.++++..+|.+.++++.+. ++.+.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34455666777889999999999999999999998875421 234468999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHH------------------hhhhhHHHHHHHHHHhhhccccccceeeccc-------------
Q 014286 119 RAFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVT------------- 167 (427)
Q Consensus 119 ~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~------------- 167 (427)
++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....++.
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999999 4789999999999999999988777777665
Q ss_pred --------------------------------------------------------CCchhhhhcCChHHHHHHHHHHhC
Q 014286 168 --------------------------------------------------------ESPHWLYKKGRTAEAEAEFEKLLG 191 (427)
Q Consensus 168 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 191 (427)
|||+|+..+++.+++...+.....
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 677777777777776666555432
Q ss_pred CCchhhHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHH
Q 014286 192 GSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFV 268 (427)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 268 (427)
.....++..+.++..+.+ ++....... ...+...+......+.++...+...+|.+.+.+..+.+.. ......
T Consensus 246 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLDHG-RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV 321 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhh-hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHH
Confidence 221111111111110000 000111111 2233445555556666667788888899999888887765 455667
Q ss_pred HHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccC
Q 014286 269 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPE 348 (427)
Q Consensus 269 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (427)
++..+++.++++++.||+|||+.+..+.....++.+.+...... ....+..+....++..++..+..++.+.+.+|
T Consensus 322 ~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 322 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 78888999999999999999999999888888877766655432 22233445555666667777888888889999
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHh
Q 014286 349 IFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIA 422 (427)
Q Consensus 349 ~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (427)
++|++.|+++.|+.+.++++++++++.+.+.+.+ ..++...|++++++++++.++.+++.||||+|++||+|+.
T Consensus 398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 9999999999999999999999999988776543 3456678889999999999999899999999999999877
Q ss_pred hCCC
Q 014286 423 LLPQ 426 (427)
Q Consensus 423 ~~~~ 426 (427)
.+++
T Consensus 478 f~~~ 481 (491)
T 4gc0_A 478 WEPE 481 (491)
T ss_dssp TC--
T ss_pred hCCC
Confidence 6553
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=3.5e-31 Score=248.07 Aligned_cols=343 Identities=11% Similarity=0.080 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (427)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 126 (427)
+..+..+...+++.+..+++...+.+.+|.+.+++ .+.++. |++.+++.++..++++++|+++||+|||++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34456677788888888899899999999999999 877776 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----hhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH---------------
Q 014286 127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE--------------- 187 (427)
Q Consensus 127 ~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------- 187 (427)
+++++.+++++ ++|++.++++|+++|++.+...+...+++.|. ...++...+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW----WSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT----CTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH----CCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999888888862 11111111111100
Q ss_pred ---HHhC-CCch---hh---------HHHHHhhhhcC-------C------------CCCcch-----hHhhhcccchhH
Q 014286 188 ---KLLG-GSHV---KS---------SLAELSKLDRG-------D------------DGDIVK-----FEELLYGRHFRV 227 (427)
Q Consensus 188 ---~~~~-~~~~---~~---------~~~~~~~~~~~-------~------------~~~~~~-----~~~~~~~~~~~~ 227 (427)
...+ .... .. .....++.++. + ++++.+ .++.++++..+.
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWY 256 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHH
Confidence 0001 0000 00 00000000000 0 000111 344555555554
Q ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhccc--CccchhhhhhHHHH-
Q 014286 228 VFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMA- 300 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~- 300 (427)
..+..++... .......+.+.+.++ .|.+.. .......++.+++.++.+++.||+ +||+.+..+..+..
T Consensus 257 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 257 IAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4444433332 334444556666655 788776 566777788899999999999999 99888877666555
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHH
Q 014286 301 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLR 379 (427)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~ 379 (427)
++.+++... .+.+.+.......+.+.+.+ ...+....+..|.+|+++|+++.|+.+.+.++ |..++|.+.|.
T Consensus 333 ~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 333 IATIVYWMN------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHTTSC------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333221 11223333344444444333 23344456889999999999999999999999 99999999999
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHh
Q 014286 380 LLEQLGPQLLYSIFGTFCLMAVAFVKRN 407 (427)
Q Consensus 380 l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 407 (427)
+.+..|+...|++.+++.+++.++....
T Consensus 406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 406 TVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888887776665544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=7.4e-30 Score=238.14 Aligned_cols=329 Identities=13% Similarity=0.081 Sum_probs=229.9
Q ss_pred HHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHH
Q 014286 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (427)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 130 (427)
..+..+++..+..+++.....+.+|.+.+++|++.++. |++.+.+.+++.++++++|+++||+|||++++++.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 34556667777778888889999999999999877766 9999999999999999999999999999999999999999
Q ss_pred HHHHH---HhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH----------HH-----h-C
Q 014286 131 GASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE----------KL-----L-G 191 (427)
Q Consensus 131 ~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~-----~-~ 191 (427)
+.+++ ++++|++.++++|+++|++.+...+....++.|. ..+++...+..... .. . .
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL----GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999 8899999999999999999999998888888762 11112111111000 00 0 0
Q ss_pred CCc-------------------------hhhH-------------HH-H--Hhhhh------cCCCCCcchhHhhhcccc
Q 014286 192 GSH-------------------------VKSS-------------LA-E--LSKLD------RGDDGDIVKFEELLYGRH 224 (427)
Q Consensus 192 ~~~-------------------------~~~~-------------~~-~--~~~~~------~~~~~~~~~~~~~~~~~~ 224 (427)
... .+.. .. . .++.+ +++++.+.+++++++++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRH 259 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSH
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChH
Confidence 000 0000 00 0 00000 011112245677888887
Q ss_pred hhHHHHHHHHHHhhhccchhHHHHhHHHH-HHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHH
Q 014286 225 FRVVFIGSTLFALQQLSGINAIFYFSSSV-FKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 299 (427)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 299 (427)
.+...+..++.... ......+.+.+ .++ .|.+.. .......++.+++.++.+++.||++||+.+..+.++.
T Consensus 260 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 260 WRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 77766655554442 33333444544 544 487766 5666677888999999999999999999998888877
Q ss_pred HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014286 300 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR 379 (427)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 379 (427)
.++.+++..... ........+.+.+.+ ...+...++..|.+|++ ++.+.++.. ...+|+.++|.+.|.
T Consensus 336 ~~~~~~~~~~~~---------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 336 MALCLISAFAGG---------HVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHCCH---------HHHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---------cHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 777666554321 112233334444333 33466666878888866 888888877 677999999999999
Q ss_pred HHHHhc-cchhHHHHHHHHHHHH
Q 014286 380 LLEQLG-PQLLYSIFGTFCLMAV 401 (427)
Q Consensus 380 l~~~~g-~~~~~~~~~~~~~~~~ 401 (427)
+.|..| +...|.+.+++.++..
T Consensus 404 l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 404 VSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHH
Confidence 999999 9888887655544443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=1.9e-26 Score=218.22 Aligned_cols=322 Identities=14% Similarity=0.109 Sum_probs=195.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccc
Q 014286 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (427)
Q Consensus 81 ~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 159 (427)
+|.+.++. |++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 88765555 999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cceeecccCCchhhhhcCC--hHHHHHHHH------HHhC----------CCch--------------hhHHHHHhhhhc
Q 014286 160 TVAALYVTESPHWLYKKGR--TAEAEAEFE------KLLG----------GSHV--------------KSSLAELSKLDR 207 (427)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~--~~~~~~~~~------~~~~----------~~~~--------------~~~~~~~~~~~~ 207 (427)
+...+++.| ....++ ...+..... ...+ ..+. .......++..+
T Consensus 127 ~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 127 PNVSTLVGT----LYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHH----HSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHH----HcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 988888886 222222 111111100 0000 0000 000000000000
Q ss_pred ---CCCC---CcchhHh---------------------------------------------------------hhcccc
Q 014286 208 ---GDDG---DIVKFEE---------------------------------------------------------LLYGRH 224 (427)
Q Consensus 208 ---~~~~---~~~~~~~---------------------------------------------------------~~~~~~ 224 (427)
++.+ ++...++ ..+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 0000 0000000 001111
Q ss_pred --hhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCC---hhHHHHHHHHHHHHHHHhHhhhhcccCccchhh-----
Q 014286 225 --FRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ----- 293 (427)
Q Consensus 225 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~----- 293 (427)
.....+...+......... .+.+.+. +..+.+ .+.......+..+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGS----VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGG----THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 1112222222222222222 2233333 223433 446777788888889999999999999987655
Q ss_pred hhhHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHH
Q 014286 294 WSFFSMAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF 372 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 372 (427)
.+..+.+++..++........ ..+.+.+.......+.+.+.+. ..+....++.|.+|++.|+++.|+.+...++|..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655554432111 1122333444444455554443 34555669999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCC
Q 014286 373 VGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGK 414 (427)
Q Consensus 373 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (427)
+|.+.+.+.+ .++...|.+.+++++++.++.+...++.+++
T Consensus 438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887765 4677788888888877777766665554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=5.9e-27 Score=213.85 Aligned_cols=322 Identities=16% Similarity=0.130 Sum_probs=210.1
Q ss_pred HHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHH
Q 014286 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (427)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 133 (427)
..+++..+...++.....+.+|.+.+++|.+.++. |++.+.+.++..++++++|+++||+|||+++..+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 45566667777888888999999999999876665 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhC-------CCchhh---
Q 014286 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLG-------GSHVKS--- 197 (427)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~--- 197 (427)
++++++|++.++++|+++|++.+...+....++.| ...++++......... ..+ ......
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 156 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD----LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence 99999999999999999999999998888888876 2222221111111000 000 000000
Q ss_pred -----------------HHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCC
Q 014286 198 -----------------SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGL 259 (427)
Q Consensus 198 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 259 (427)
..++.++.++++++.+.++++.+++|..+...+..++.... ......+.|.+. +..|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~ 232 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAG----IAAFEACSGVLMGAVLGL 232 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC
Confidence 00000111111122334566777777666655554444332 222223333332 22454
Q ss_pred Chh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHH-HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q 014286 260 SSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA 335 (427)
Q Consensus 260 ~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (427)
+.. .......++.+++.++.+++.||.+++ +..+... ...+...+..... ...+.+.......+.+.+.+
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~ 306 (375)
T 2gfp_A 233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAG 306 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHH
Confidence 443 566667788889999999999998872 2222222 2222221111110 00112333344445555554
Q ss_pred hcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 014286 336 LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 393 (427)
Q Consensus 336 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 393 (427)
.. .+....+..|.+| ++||++.|+.+...++|..++|.+.|.+.+..++...+.+.
T Consensus 307 ~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 307 ML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred Hh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 43 4555558899988 89999999999999999999999999998887777666543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.6e-25 Score=206.93 Aligned_cols=333 Identities=14% Similarity=0.095 Sum_probs=185.9
Q ss_pred ccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHH---HHHhhhhh-H
Q 014286 68 GVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNL-I 142 (427)
Q Consensus 68 ~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~ 142 (427)
....+.+|. +++++|++..+. |++.+.+.++..++++++|+++||+|||++++++..+++++.. .+.+++.. .
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566776 456689887777 9999999999999999999999999999999988877765322 12233222 1
Q ss_pred HHHHHHHHHhhhccccccc----eeecccCCchhh------h-hcCChHHHHH-HH-HHHh--C--------C-C-----
Q 014286 143 GMLLGRFVVGTGMGLGPTV----AALYVTESPHWL------Y-KKGRTAEAEA-EF-EKLL--G--------G-S----- 193 (427)
Q Consensus 143 ~l~~~r~l~G~~~g~~~~~----~~~~i~~~~~~~------~-~~~~~~~~~~-~~-~~~~--~--------~-~----- 193 (427)
.++..+++.|++.+...+. ...+.++.++.. . .......... .+ ..+. + . .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 2345566666655443322 222222211100 0 0001000000 00 0000 0 0 0
Q ss_pred ----chhhHHHHHhh-hhc-CCCC---CcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh-cCCC---
Q 014286 194 ----HVKSSLAELSK-LDR-GDDG---DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS--- 260 (427)
Q Consensus 194 ----~~~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--- 260 (427)
..+++.++..+ .++ ++++ ...+++++++++..+...+..+..... +.....+.+.+..+ .+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 257 (417)
T 2cfq_A 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQFANFFTSFFATGEQG 257 (417)
T ss_dssp HHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCC
Confidence 00000000000 000 0011 112344566666655444332222221 11111223333222 2211
Q ss_pred h---hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhc
Q 014286 261 S---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG 337 (427)
Q Consensus 261 ~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (427)
. +....+..++.+++.++.++++||+|||+.+..+..+.+++...+... + ..+..++...+.+.+...
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~- 328 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------T-SALEVVILKTLHMFEVPF- 328 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------C-SHHHHHHHTTHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------c-cHHHHHHHHHHHHHHHHH-
Confidence 1 134445566778889999999999999998887777666654443221 1 112222222222322221
Q ss_pred ccchhhhhccCcCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014286 338 AGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 415 (427)
Q Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (427)
..+....++.|.+|++.||++.++. +...++|++++|.+.|.+.+..|+...|.+.+++++++.++.+...+|+++.+
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 2233355899999999999999994 88888999999999999999888888888888888887776666566555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.86 E-value=4.6e-22 Score=189.70 Aligned_cols=95 Identities=21% Similarity=0.325 Sum_probs=86.0
Q ss_pred chhh-hhhhccC------CCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-chhHHHHHhhHHHHHHHHHHHhhh-hhH
Q 014286 72 EPLE-SISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLI 142 (427)
Q Consensus 72 ~~~~-~i~~~~~------~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~ 142 (427)
+.++ .+.+++| ++..+. |++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 3444 5677888 877766 9999999999999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhccccccceeecccC
Q 014286 143 GMLLGRFVVGTGMGLGPTVAALYVTE 168 (427)
Q Consensus 143 ~l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (427)
.++++|+++|++.+...+...+++.|
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~ 136 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGD 136 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHH
Confidence 99999999999999998888888776
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=2.8e-14 Score=133.17 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=124.6
Q ss_pred hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHH----HhhcCCC
Q 014286 243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA----ASSSYIP 315 (427)
Q Consensus 243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 315 (427)
......+.+.+.++. .+.. +......++..++.++.|+++||+|||+.+..+.++.+++.+++.+ ..+.
T Consensus 44 ~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 119 (451)
T 1pw4_A 44 RKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI--- 119 (451)
T ss_dssp HTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS---
T ss_pred HHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH---
Confidence 334445566666666 5544 6777788889999999999999999999999999999998888776 4332
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHH
Q 014286 316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFG 394 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~ 394 (427)
+..++..++.+.+.+. ..+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..| |+..|++.+
T Consensus 120 -----~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~ 193 (451)
T 1pw4_A 120 -----AVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 193 (451)
T ss_dssp -----SHHHHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred -----HHHHHHHHHHHHHhhh-ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2444445555555443 345555699999999999999999999999999999999999999999 999999998
Q ss_pred HHHHHHHHHHHHhccCC
Q 014286 395 TFCLMAVAFVKRNVVET 411 (427)
Q Consensus 395 ~~~~~~~~~~~~~~~~~ 411 (427)
++.++..++.++..+|+
T Consensus 194 ~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 194 FCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHhhccCC
Confidence 88877776666666654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=2.2e-13 Score=126.59 Aligned_cols=158 Identities=14% Similarity=0.085 Sum_probs=118.9
Q ss_pred hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286 243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 319 (427)
Q Consensus 243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (427)
........|.+.++.|.+.. +......++..++.++.|+++||+|||+.+..+.++.+++.++...... ..+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~ 116 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----TTC
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-----ccc
Confidence 44555667788888998876 5667777888899999999999999999999999999988887733221 112
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------------
Q 014286 320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL-EQLG------------- 385 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g------------- 385 (427)
.+..++..++.+.+.+.. .+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 117 ~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE 195 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred HHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 234455555555555433 4455569999999999999999999999999999999999998 4443
Q ss_pred ------------cchhHHHHHHHHHHHHHHHHH
Q 014286 386 ------------PQLLYSIFGTFCLMAVAFVKR 406 (427)
Q Consensus 386 ------------~~~~~~~~~~~~~~~~~~~~~ 406 (427)
|++.|.+.+++.++..++..+
T Consensus 196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778887777666655544433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.48 E-value=2.1e-13 Score=128.67 Aligned_cols=154 Identities=9% Similarity=0.109 Sum_probs=116.2
Q ss_pred HHHHhHHHHHHh-----cCCChh---HHHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhhcCCC
Q 014286 245 AIFYFSSSVFKS-----AGLSSG---LANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIP 315 (427)
Q Consensus 245 ~~~~~~~~~~~~-----~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (427)
......+++.+. .|.+.. +......++..++.++.|+++|| +|||+.+..+.++.+++.+++....+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~---- 107 (491)
T 4aps_A 32 MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG---- 107 (491)
T ss_dssp HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS----
T ss_pred HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh----
Confidence 333444455454 788776 56677788889999999999999 89999999999888888777654322
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 014286 316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 393 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 393 (427)
.+...+..++.+.+.+. ..+...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+..||+..|.+.
T Consensus 108 ----~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 108 ----ASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp ----TTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 23444444555554443 34555669999999988 778888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHh
Q 014286 394 GTFCLMAVAFVKRN 407 (427)
Q Consensus 394 ~~~~~~~~~~~~~~ 407 (427)
++..+++.++....
T Consensus 183 ~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 183 AIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77776665555433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.43 E-value=2.8e-13 Score=123.10 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=123.8
Q ss_pred hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286 243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 319 (427)
Q Consensus 243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (427)
........+.+.++.|.+.. .......++..++.+..|+++||+|||+.+..+..+..++..+.....+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------- 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL------- 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-------
Confidence 34444456677788888776 56667778888999999999999999999999999998888877765432
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286 320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM 399 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 399 (427)
+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+.+++.++
T Consensus 89 -~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 89 -TVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp -HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2334444444444432 34555668999999999999999999999999999999999999888999999888877776
Q ss_pred HHHHHHHhccCCC
Q 014286 400 AVAFVKRNVVETK 412 (427)
Q Consensus 400 ~~~~~~~~~~~~~ 412 (427)
..+...+..||++
T Consensus 167 ~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 167 VTFSMARWMPETR 179 (375)
T ss_dssp HHCCCCCSSCCCS
T ss_pred HHHHHHHHCcccC
Confidence 6654555556543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.38 E-value=4.2e-12 Score=120.77 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=113.3
Q ss_pred HHHhHHHHHHhcC------CChh---HHHHHHHHHHHHHHHhHhhhhccc-CccchhhhhhHHHHHHHHHHHHHhhcCCC
Q 014286 246 IFYFSSSVFKSAG------LSSG---LANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIP 315 (427)
Q Consensus 246 ~~~~~~~~~~~~g------~~~~---~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (427)
..+..+++.++.| .+.. .......++..++.++.|+++||+ |||+.+..+.++.+++.+++.+..
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~----- 106 (524)
T 2xut_A 32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE----- 106 (524)
T ss_dssp HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3344445555667 6655 567777888889999999999999 999999999888888877766543
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 014286 316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSI 392 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 392 (427)
.+.+..++..++.+.+.+. ..+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..||+..|.+
T Consensus 107 --~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 107 --HSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp --SCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 0123444444444544443 345666699999999999877666 8889999999999999999998999999988
Q ss_pred HHHHHHHHHHHHH
Q 014286 393 FGTFCLMAVAFVK 405 (427)
Q Consensus 393 ~~~~~~~~~~~~~ 405 (427)
.+++.++..++..
T Consensus 184 ~~~~~~~~~~~~~ 196 (524)
T 2xut_A 184 PGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877666655543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.98 E-value=4.5e-09 Score=98.98 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCC----------CCchhHHHHHHHHHHHH
Q 014286 263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP----------GSASLYLSVGGMLMFVL 332 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 332 (427)
+......++.++|.++.|+++||+|||+.+.++.++..++.++.++....... -..+.+..++.-++.+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555678889999999999999999999999999998888877643211000 01223344444555555
Q ss_pred HHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286 333 TFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 382 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 382 (427)
+.+. ..+....+++|..|+++|+...++.+.....|..+++.+......
T Consensus 139 g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 139 GVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 4443 345556699999999999999999999988888888877666554
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.83 E-value=1e-10 Score=107.81 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=94.9
Q ss_pred hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhh
Q 014286 219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQW 294 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 294 (427)
.+|+++++......++.... +.....+.+.+. ++.|.+.. .......++..+++++.|+++||+|||+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~ 78 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFI----MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHH----HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred cccccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45666666555444333332 222223344433 44677655 67777788899999999999999999999887
Q ss_pred hhHHHHHHHHHH---HHHhhcCCCCCchhHHHHHHHHHHHHHHhh---cccchhhhhccCcCCccchhhHHHHHHHHHHH
Q 014286 295 SFFSMAVSMAIQ---VAASSSYIPGSASLYLSVGGMLMFVLTFAL---GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV 368 (427)
Q Consensus 295 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 368 (427)
+..+..++...+ ........ .......+.+...+. ...+....+..|. ++.++.+.|..+....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~ 149 (417)
T 2cfq_A 79 IITGMLVMFAPFFIFIFGPLLQY-------NILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCV 149 (417)
T ss_dssp HHHHTTSCHHHHHHHTHHHHHHT-------TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHH
Confidence 776554322111 11110000 000011111111111 1112222222221 14567778888888889
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 014286 369 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 402 (427)
Q Consensus 369 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 402 (427)
|..++|.+.+.+.+ .+|+..|++.++..++..+
T Consensus 150 g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 150 GWALGASIVGIMFT-INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp HHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence 99999999999887 5788887766555443333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=67.45 E-value=1.3 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.3
Q ss_pred hHHhhhcccchhHH
Q 014286 107 LSGWIADGVGRRRA 120 (427)
Q Consensus 107 ~~G~l~dr~Grr~~ 120 (427)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=36.80 E-value=66 Score=25.25 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHhhhcccchh
Q 014286 95 SMCLGGAFIGSTLSGWIADGVGRR 118 (427)
Q Consensus 95 s~~~l~~~~~~~~~G~l~dr~Grr 118 (427)
.-|.+|+.++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 457888889999999999987644
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=23.20 E-value=1.5e+02 Score=18.85 Aligned_cols=30 Identities=10% Similarity=-0.200 Sum_probs=15.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 014286 384 LGPQLLYSIFGTFCLMAVAFVKRNVVETKG 413 (427)
Q Consensus 384 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (427)
.||..++.+...+.+++.-..-..+||..+
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 445545544444444444444456676544
No 18
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=22.30 E-value=15 Score=17.77 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=7.6
Q ss_pred hcccchhHHH
Q 014286 112 ADGVGRRRAF 121 (427)
Q Consensus 112 ~dr~Grr~~l 121 (427)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 6888888754
Done!