BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014288
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 183/331 (55%), Gaps = 16/331 (4%)
Query: 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 135
++T+++GL+ Y M R E Q+Y + + GF HL +GQEA G + D +
Sbjct: 47 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 136 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 195
++ YR H ++G+ R +++EL G+ GC +G+GGSMHM++K N GG +G +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 196 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255
+ G A KY + D V L +GDG N GQ FE NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 256 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315
+ +G S RA + YK+G +PG VDGMD+L VRE + A R G+GP L+E
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 316 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 372
+TYR+ GHS++DP R+ ++ R + DPI LK ++ S+LAS ELK I+ ++
Sbjct: 276 LQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 373 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 402
PP +L +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 182/331 (54%), Gaps = 16/331 (4%)
Query: 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 135
++T+++GL+ Y M R E Q+Y + + GF HL +GQEA G + D +
Sbjct: 30 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 136 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 195
++ YR H ++G+ R +++EL G+ GC +G+GGSMHM++K N GG +G +P
Sbjct: 90 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 147
Query: 196 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255
+ G A KY + D V L +GDG N GQ FE NMAALWKLP +F+ ENN
Sbjct: 148 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 200
Query: 256 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315
+ +G S RA + YK+G +PG VDGMD+L VRE + A R G+GP L+E
Sbjct: 201 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 258
Query: 316 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 372
+TYR+ GH ++DP R+ ++ R + DPI LK ++ S+LAS ELK I+ ++
Sbjct: 259 LQTYRYHGHEMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 317
Query: 373 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 402
PP +L +++ +DP
Sbjct: 318 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 348
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 183/331 (55%), Gaps = 16/331 (4%)
Query: 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 135
++T+++GL+ Y M R E Q+Y + + GF HL +GQEA G + D +
Sbjct: 47 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 136 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 195
++ YR H ++G+ R +++EL G+ GC +G+GGSMHM++K N GG +G +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 196 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255
+ G A KY + D V L +GDG N GQ FE NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 256 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315
+ +G + RA + YK+G +PG VDGMD+L VRE + A R G+GP L+E
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 316 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 372
+TYR+ GHS++DP R+ ++ R + DPI LK ++ S+LAS ELK I+ ++
Sbjct: 276 LQTYRYHGHSMSDPGVAYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 373 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 402
PP +L +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 183/331 (55%), Gaps = 16/331 (4%)
Query: 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 135
++T+++GL+ Y M R E Q+Y + + GF HL +GQEA G + D +
Sbjct: 47 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 136 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 195
++ +R H ++G+ R +++EL G+ GC +G+GGSMHM++K N GG +G +P
Sbjct: 107 ITAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 196 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255
+ G A KY + D V L +GDG N GQ FE NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 256 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315
+ +G S RA + YK+G +PG VDGMD+L VRE + A R G+GP L+E
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 316 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 372
+TYR+ GHS++DP R+ ++ R + DPI LK ++ S+LAS ELK I+ ++
Sbjct: 276 LQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 373 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 402
PP +L +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 182/331 (54%), Gaps = 16/331 (4%)
Query: 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 135
++T+++GL+ Y M R E Q+Y + + GF HL +GQEA G + D +
Sbjct: 47 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 136 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 195
++ YR H ++G+ R +++EL G+ GC +G+GGSMHM++K N GG +G +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 196 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255
+ G A KY + D V L +GDG N GQ FE NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 256 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315
+ +G + RA + YK+G +PG VDGMD+L VRE + A R G+GP L+E
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 316 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 372
+TYR+ GH ++DP R+ ++ R + DPI LK ++ S+LAS ELK I+ ++
Sbjct: 276 LQTYRYHGHXMSDPGVAYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 373 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 402
PP +L +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 174/331 (52%), Gaps = 16/331 (4%)
Query: 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 135
++T+++GL+ Y R E Q+Y + + GF HL +GQEA G + D +
Sbjct: 30 VLTREDGLKYYRXXQTVRRXELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 136 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 195
++ YR H ++G+ R +++EL G+ GC +G+GGS H ++K N GG +G +P
Sbjct: 90 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAK--NFYGGNGIVGAQVP 147
Query: 196 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255
+ G A KY + D V L +GDG N GQ FE N AALWKLP +F+ ENN
Sbjct: 148 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENN 200
Query: 256 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315
+ G S RA + YK+G +PG VDG D+L VRE + A R G+GP L E
Sbjct: 201 RYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREATRFAAAYCRSGKGPILXE 258
Query: 316 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 372
+TYR+ GHS +DP R+ ++ R + DPI LK + S+LAS ELK I+ ++
Sbjct: 259 LQTYRYHGHSXSDPGVSYRTREEIQEVR-SKSDPIXLLKDRXVNSNLASVEELKEIDVEV 317
Query: 373 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 402
PP +L +++ +DP
Sbjct: 318 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 348
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 154/319 (48%), Gaps = 10/319 (3%)
Query: 85 LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHV 143
LY DM+ R ++ + GK F+ G EA ++ D V YRDH
Sbjct: 41 LYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 144 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 203
AL+ G+P + ++ ++ +G+ H SK N + I +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 204 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263
K R V + FGDG + G ++ +N AA+ P VF+ ENN +AI + +
Sbjct: 160 MKLLR-------TGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDY 212
Query: 264 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323
T P I K AFG+PG+ VDGMDVL V KEA+ERARRGEGP+LVE YR+
Sbjct: 213 RHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGP 272
Query: 324 HSLADPDELRDPAEK-ARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXX 382
HS AD D P E+ A + +DPI +++L L +E + + ++I
Sbjct: 273 HSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKE 332
Query: 383 XXXXXPPPRSQLLENVFAD 401
P P + E+VFA+
Sbjct: 333 AEEAGPVPPEWMFEDVFAE 351
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
Query: 84 ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 143
EL M+ R + + +G++ GF GQEA L+KED ++ YRD
Sbjct: 48 ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 106
Query: 144 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 203
+ G+P + + F + G G + + N+L IG A G A
Sbjct: 107 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 157
Query: 204 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263
K R + V + + GDG + G F+E +N A +K P +FVV+NN +AI
Sbjct: 158 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 264 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323
+ T + +K A G+PG VDGMD L V K A ERA GEGPTL+E +R+
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 324 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 364
H+++ DP R + +A +DP+ +K+L L SE E
Sbjct: 271 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 313
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
Query: 84 ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 143
EL M+ R + + +G++ GF GQEA L+KED ++ YRD
Sbjct: 49 ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 107
Query: 144 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 203
+ G+P + + F + G G + + N+L IG A G A
Sbjct: 108 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 158
Query: 204 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263
K R + V + + GDG + G F+E +N A +K P +FVV+NN +AI
Sbjct: 159 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 211
Query: 264 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323
+ T + +K A G+PG VDGMD L V K A ERA GEGPTL+E +R+
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 324 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 364
H+++ DP R + +A +DP+ +K+L L SE E
Sbjct: 272 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 314
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
Query: 84 ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 143
EL M+ R + + +G++ GF GQEA L+KED ++ YRD
Sbjct: 48 ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 106
Query: 144 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 203
+ G+P + + F + G G + + N+L IG A G A
Sbjct: 107 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 157
Query: 204 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263
K R + V + + GDG + G F++ +N A +K P +FVV+NN +AI
Sbjct: 158 LKMRGK-------KAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 264 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323
+ T + +K A G+PG VDGMD L V K A ERA GEGPTL+E +R+
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 324 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 364
H+++ DP R + +A +DP+ +K+L L SE E
Sbjct: 271 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 313
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 131/283 (46%), Gaps = 19/283 (6%)
Query: 84 ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 143
EL M+ R + + +G++ GF GQEA L+KED ++ YRD
Sbjct: 49 ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 107
Query: 144 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 203
+ G+P + + F + G G + + N+L IG A G A
Sbjct: 108 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 158
Query: 204 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263
K R + V + + GDG + G F+E +N A +K P +FVV+NN +A
Sbjct: 159 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTPV 211
Query: 264 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323
+ T + +K A G+PG VDGMD L V K A ERA GEGPTL+E +R+
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 324 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 364
H+++ DP R + +A +DP+ +K+L L SE E
Sbjct: 272 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 314
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR HS +D P ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR HS +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR HS +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR H+ +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR H +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR H +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR H +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR H +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 12/298 (4%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGH--SLADPDELRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 371
TYR GH + AD R E + +D PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRI-GHASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR S +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
R+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GAAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TYR HS +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRIGHHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 12/298 (4%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 371
TYR GH+ D R E + +D PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 12/298 (4%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GAYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 371
TYR GH+ D R E + +D PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 12/298 (4%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
+R+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQFREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 371
TYR GH+ D R E + +D PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 10/297 (3%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
YR+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 371
TY S +D ++ Y + PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYAIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 12/298 (4%)
Query: 77 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 136
+ K++ L+LY+ M L + + + + +G++ ++ Y G+E G L D V
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 137 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 196
R+ + + P M++ +G + +G+ +H KE + + + + IP
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 197 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256
A GAA+ +K A+ + V + +FG+G + G N AA + PI+F NN
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316
+AI I +GP +G+ VDG DV V KEA RA P L+E
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 317 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 371
TYR GH+ D R E + +D PI+ L+ YL+ E + KA K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 114/265 (43%), Gaps = 9/265 (3%)
Query: 105 RGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 164
R K F G+EA+ +G L + D TYR +++ V ++ +L
Sbjct: 99 RQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNER 158
Query: 165 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 224
+G+ + +E + A G A S + + + A+
Sbjct: 159 DPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDT-------KIASAWI 211
Query: 225 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPG 283
GDG F L A +++ P++ V NN WAI A + + +G G+
Sbjct: 212 GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIAS 271
Query: 284 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPAEKARYA 342
VDG D + V ++ A ERARRG GP+L+E TYR HS + DP + R + + +
Sbjct: 272 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP 331
Query: 343 ARDPITALKKYLIESSLASEAELKA 367
DPI LK++LI+ SE E +A
Sbjct: 332 LGDPIARLKQHLIKIGHWSEEEHQA 356
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 112/265 (42%), Gaps = 9/265 (3%)
Query: 105 RGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 164
R K F G+EA+ +G L + D TYR ++ V + +L
Sbjct: 98 RQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNER 157
Query: 165 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 224
+G+ + +E + A G A S + + + A+
Sbjct: 158 DPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDT-------KIASAWI 210
Query: 225 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPG 283
GDG F L A +++ P++ V NN WAI A + + +G G+
Sbjct: 211 GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIAS 270
Query: 284 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPAEKARYA 342
VDG D + V ++ A ERARRG GP+L+E TYR HS + DP + R + + +
Sbjct: 271 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP 330
Query: 343 ARDPITALKKYLIESSLASEAELKA 367
DPI LK++LI+ SE E +A
Sbjct: 331 LGDPIARLKQHLIKIGHWSEEEHQA 355
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 249
+G+G+ A G A+T KY + C GDG + G +E + A+++KL
Sbjct: 121 LGQGLGAACGMAYTGKYFDKASYRVYC------LLGDGELSEGSVWEAMAFASIYKL--- 171
Query: 250 FVVENNLWAIGMSHLRATSDP-------QIY-KKGPAFGMPGFHVDGMDVLKVREVAKEA 301
+NL AI + SDP IY K+ AFG VDG V ++ + +A
Sbjct: 172 ----DNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 227
Query: 302 IERARRGEGPTLVECETYRFRG 323
+ PT + +T++ RG
Sbjct: 228 KHQ------PTAIIAKTFKGRG 243
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 249
+G+G+ A G A+T KY + C GDG + G +E + A+++KL
Sbjct: 123 LGQGLGAACGMAYTGKYFDKASYRVYC------LLGDGELSEGSVWEAMAFASIYKL--- 173
Query: 250 FVVENNLWAIGMSHLRATSDP-------QIY-KKGPAFGMPGFHVDGMDVLKVREVAKEA 301
+NL AI + SDP IY K+ AFG VDG V ++ + +A
Sbjct: 174 ----DNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 229
Query: 302 IERARRGEGPTLVECETYRFRG 323
+ PT + +T++ RG
Sbjct: 230 KHQ------PTAIIAKTFKGRG 245
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 190 IGEGIPVATGAA-----FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
+G+GI A G A +KY R+ DH T A GDG G E ++AA
Sbjct: 142 LGQGIATAVGXAXAERHLAAKYNRDAYN--IVDHYTYAICGDGDLXEGVSAEASSLAAHL 199
Query: 245 KLP-IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAI 302
+L +V + ++N ++ R+ S+ + + A+G V DG D+ E +AI
Sbjct: 200 QLGRLVVLYDSNDISLDGDLNRSFSE-SVEDRYKAYGWQVIRVEDGNDI----EAIAKAI 254
Query: 303 ERARRGEG-PTLVECET 318
E A+ E PTL+E T
Sbjct: 255 EEAKADEKRPTLIEVRT 271
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEAD------CDHVTLAFFGDGTCNNGQFFECLNMAAL 243
+G+GI A G A R++ E + DH T DG G E ++A
Sbjct: 120 LGQGISTAVGLALAE---RKLAAEFNRPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGH 176
Query: 244 WKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEA 301
W L IVF +N + G + L T D + + A+G V+ ++ L E ++A
Sbjct: 177 WGLSKLIVFWDDNRISIDGPTDLAFTED--VLARYRAYGWQTLRVEDVNDL---EALRKA 231
Query: 302 IERARRGEGPTLVECETY 319
I+ A+ E PTL+ ++
Sbjct: 232 IKLAKLDERPTLIAVRSH 249
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-- 247
+G+G+ A G A +K + +L DH GDG G +E ++A L KL
Sbjct: 116 LGQGVANAVGFAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNF 175
Query: 248 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 307
I+ NN+ G L + + F GF V ++ E+ K A+E+A++
Sbjct: 176 ILIYDSNNISIEGDVGLAFNENVKX-----RFEAQGFEVLSINGHDYEEINK-ALEQAKK 229
Query: 308 GEGPTLVECETYRFRG 323
P L+ +T +G
Sbjct: 230 STKPCLIIAKTTIAKG 245
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-- 247
+G+G+ A G A +K + +L DH GDG G +E ++A L KL
Sbjct: 119 LGQGVANAVGFAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNF 178
Query: 248 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 307
I+ NN+ G L + + F GF V ++ E+ K A+E+A++
Sbjct: 179 ILIYDSNNISIEGDVGLAFNENVKX-----RFEAQGFEVLSINGHDYEEINK-ALEQAKK 232
Query: 308 GEGPTLVECETYRFRG 323
P L+ +T +G
Sbjct: 233 STKPCLIIAKTTIAKG 248
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKL 246
+G+G+ A G A K + D DH T F GDG G E ++A L
Sbjct: 118 LGQGVANAVGXALGEKLLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGL 177
Query: 247 P--IVFVVENNLWAIGMSH-LRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAI 302
+ F +NN+ G + + + P+ ++ A+G +VDG D + + + EA
Sbjct: 178 NKLVAFWDDNNISIDGDTKGWFSDNTPERFR---AYGWHVIENVDGHDFVAIEKAINEAH 234
Query: 303 ERARRGEGPTLVECET 318
+ ++ PTL+ C+T
Sbjct: 235 SQQQK---PTLICCKT 247
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKL 246
+G+GI A G A K DH T AF GDG G E ++A KL
Sbjct: 116 LGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKL 175
Query: 247 P--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV----DGMDVLKVREVAKE 300
I F +N + G T D + F G+HV DG D + K
Sbjct: 176 GKLIAFYDDNGISIDGHVEGWFTDDTAMR-----FEAYGWHVIRDIDGHDAASI----KR 226
Query: 301 AIERARR-GEGPTLVECET 318
A+E AR + P+L+ C+T
Sbjct: 227 AVEEARAVTDKPSLLMCKT 245
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKL 246
+G+GI A G A K DH T AF GDG G E ++A KL
Sbjct: 115 LGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKL 174
Query: 247 P--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV----DGMDVLKVREVAKE 300
I F +N + G T D + F G+HV DG D + K
Sbjct: 175 GKLIAFYDDNGISIDGHVEGWFTDDTAMR-----FEAYGWHVIRDIDGHDAASI----KR 225
Query: 301 AIERARR-GEGPTLVECET 318
A+E AR + P+L+ C+T
Sbjct: 226 AVEEARAVTDKPSLLMCKT 244
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGAARWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 400 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 443
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 444 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 501
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 502 L-KGSLQEALSAKGPVLIEVST 522
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 400 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 443
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 444 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 501
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 502 L-KGSLQEALSAKGPVLIEVST 522
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244
GG F +P A G R+ +A GDG+ N L AA +
Sbjct: 401 GGLGF---ALPAAIGVQLAEPERQ-----------VIAVIGDGSANYS--ISALWTAAQY 444
Query: 245 KLPIVFVVENN------LWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVDGMDVLKVRE 296
+P +FV+ NN W G+ L A + P + G F G+ V + + +
Sbjct: 445 NIPTIFVIMNNGTYGALRWFAGV--LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 297 VAKEAIERARRGEGPTLVECET 318
+ K +++ A +GP L+E T
Sbjct: 503 L-KGSLQEALSAKGPVLIEVST 523
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 219 VTLAFFGDGT-CNNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQIYK 274
V L GD G E LN+A L + +V NN + + S
Sbjct: 524 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTD 583
Query: 275 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRD 334
G P FHV+G D VA+ A++ + + +++ YR RGH+ D +
Sbjct: 584 VAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ 643
Query: 335 P 335
P
Sbjct: 644 P 644
>pdb|3V0U|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 338
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 210 VLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRA 266
V+KEA +T D NG E L AL +LP I + + IG S ++A
Sbjct: 40 VIKEAFNCGITFFDTSDIYGENGSNEELLG-KALKQLPREKIQVGTKFGIHEIGFSGVKA 98
Query: 267 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326
P + + VD +D+ + + GE LVE ++ G S
Sbjct: 99 KGTPDYVRSCCEASLKRLDVDYIDLFYIHRIDTTVPIEITMGELKKLVEEGKIKYVGLSE 158
Query: 327 ADPDELRDPAEKARYAARDPITALKKYLIESSLAS 361
A PD +R R A P+TAL+ IE SL +
Sbjct: 159 ASPDTIR------RAHAVHPVTALQ---IEYSLWT 184
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 210 VLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRA 266
V+KEA +T D NG E L AL +LP I + + IG S ++A
Sbjct: 40 VIKEAFNCGITFFDTSDIYGENGSNEELLG-KALKQLPREKIQVGTKFGIHEIGFSGVKA 98
Query: 267 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326
P + + VD +D+ + + GE LVE ++ G S
Sbjct: 99 KGTPDYVRSCCEASLKRLDVDYIDLFYIHRIDTTVPIEITMGELXKLVEEGKIKYVGLSE 158
Query: 327 ADPDELRDPAEKARYAARDPITALKKYLIESSLAS 361
A PD +R R A P+TAL+ IE SL +
Sbjct: 159 ASPDTIR------RAHAVHPVTALQ---IEYSLWT 184
>pdb|3V0T|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 210 VLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRA 266
V+KEA +T D NG E L AL +LP I + + IG S ++A
Sbjct: 39 VIKEAFNCGITFFDTSDIYGENGSNEELLG-KALKQLPREKIQVGTKFGIHEIGFSGVKA 97
Query: 267 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326
P + + VD +D+ + + GE LVE ++ G S
Sbjct: 98 KGTPDYVRSCCEASLKRLDVDYIDLFYIHRIDTTVPIEITMGELKKLVEEGKIKYVGLSE 157
Query: 327 ADPDELRDPAEKARYAARDPITALKKYLIESSLAS 361
A PD +R R A P+TAL+ IE SL +
Sbjct: 158 ASPDTIR------RAHAVHPVTALQ---IEYSLWT 183
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 219 VTLAFFGDGT-CNNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQIYK 274
V L GD G E LN+A L + +V NN + + S
Sbjct: 279 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTD 338
Query: 275 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRD 334
G P FHV+G D VA+ A++ + + +++ YR RGH+ D +
Sbjct: 339 VAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ 398
Query: 335 P 335
P
Sbjct: 399 P 399
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 16/138 (11%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKL 246
+G+GI A G A K+ + D DH T GDG G E ++A W L
Sbjct: 129 LGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGL 188
Query: 247 P--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD----GMDVLKVREVAKE 300
I F +N++ G + + T D + + A G V G D +R KE
Sbjct: 189 GKLIAFYDDNHISIDGDTEIAFTED--VSTRFEALGWHTIWVKNGNTGYD--DIRAAIKE 244
Query: 301 AIERARRGEGPTLVECET 318
A + PTL++ T
Sbjct: 245 AKAVTDK---PTLIKVTT 259
>pdb|3V0S|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 13/155 (8%)
Query: 210 VLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRA 266
V+KEA +T D NG E L AL +LP I + + IG S ++A
Sbjct: 39 VIKEAFNCGITFFDTSDIYGENGSNEELLG-KALKQLPREXIQVGTKFGIHEIGFSGVKA 97
Query: 267 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326
P + + VD +D+ + + GE LVE + G S
Sbjct: 98 XGTPDYVRSCCEASLKRLDVDYIDLFYIHRIDTTVPIEITMGELXXLVEEGKIXYVGLSE 157
Query: 327 ADPDELRDPAEKARYAARDPITALKKYLIESSLAS 361
A PD +R R A P+TAL+ IE SL +
Sbjct: 158 ASPDTIR------RAHAVHPVTALQ---IEYSLWT 183
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 190 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMA---AL 243
+G+GI A G A + DH T + GDG G E L++A AL
Sbjct: 118 LGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLAL 177
Query: 244 WKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHV-----DGMDVLKVREV 297
KL +++ ++N +I G + L T Q ++K A GFHV D +R+
Sbjct: 178 EKLIVIY--DSNYISIDGSTSLSFTE--QCHQKYVAM---GFHVIEVKNGDTDYEGLRKA 230
Query: 298 AKEAIERARRGEGPTLVECETYRF 321
EA +A +G+ +V+ T F
Sbjct: 231 LAEA--KATKGKPKMIVQTTTIGF 252
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 56/147 (38%), Gaps = 9/147 (6%)
Query: 195 PVATGAAFTSKYRREVLKEADCDHVT-LAFFGDGTCN-NGQFFECLNMAALWKLPI---V 249
PV G+ + R + L E + V + GD G E LNM+ + V
Sbjct: 328 PVVIGSV---RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTV 384
Query: 250 FVVENNLWAIGMSH-LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG 308
+V NN S+ L A S P G P FHV+ D V V + A++
Sbjct: 385 RIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTF 444
Query: 309 EGPTLVECETYRFRGHSLADPDELRDP 335
+ ++ YR GH+ AD P
Sbjct: 445 KRDVFIDLVCYRRHGHNEADEPSATQP 471
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 56/147 (38%), Gaps = 9/147 (6%)
Query: 195 PVATGAAFTSKYRREVLKEADCDHVT-LAFFGDGTCN-NGQFFECLNMAALWKLPI---V 249
PV G+ + R + L E + V + GD G E LNM+ + V
Sbjct: 328 PVVIGSV---RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTV 384
Query: 250 FVVENNLWAIGMSH-LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG 308
+V NN S+ L A S P G P FHV+ D V V + A++
Sbjct: 385 RIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTF 444
Query: 309 EGPTLVECETYRFRGHSLADPDELRDP 335
+ ++ YR GH+ AD P
Sbjct: 445 KRDVFIDLVCYRRHGHNEADEPSATQP 471
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 94 SFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALS 147
+ ED+ ++ G + L +G A+ST + L + DSVV+T R H LS
Sbjct: 83 TVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLS 136
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 190 IGEGIPVATGAAFTSKYRREVLK------EADCDHVTLAFFGDGTCNNGQFFECLNMAAL 243
+G+G+ A G A S+Y R + + DH DG G E ++AA+
Sbjct: 135 LGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAV 194
Query: 244 WKLP--IVFVVENNL 256
+L IVF N +
Sbjct: 195 QQLGNLIVFYDRNQI 209
>pdb|3HP7|A Chain A, Putative Hemolysin From Streptococcus Thermophilus
Length = 291
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 289 MDVLKVREVAKEAIERARRGEGPTLV----ECETYRFRGHSLADPDELRDPAEKARYAAR 344
+DVL ++ E E+A+RG LV E Y G + D EL+ EK RY +R
Sbjct: 9 VDVLAYKQGLFETREQAKRGVXAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVSR 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,332,112
Number of Sequences: 62578
Number of extensions: 490806
Number of successful extensions: 1089
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 79
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)