Query 014288
Match_columns 427
No_of_seqs 294 out of 2544
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02374 pyruvate dehydrogenas 100.0 1.4E-94 3E-99 743.1 43.0 425 1-427 1-433 (433)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 3.5E-85 7.6E-90 651.6 35.9 324 76-405 23-348 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 4E-81 8.7E-86 631.8 37.3 334 75-418 25-362 (362)
4 KOG0225 Pyruvate dehydrogenase 100.0 2.6E-81 5.7E-86 604.4 29.9 338 76-425 55-394 (394)
5 CHL00149 odpA pyruvate dehydro 100.0 2.3E-79 5E-84 616.4 37.0 329 73-401 13-341 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 3.4E-77 7.3E-82 595.7 34.7 315 79-400 1-315 (315)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.9E-72 4.1E-77 567.0 35.7 329 58-405 1-333 (341)
8 PF00676 E1_dh: Dehydrogenase 100.0 3.1E-69 6.7E-74 534.9 30.3 297 88-392 2-300 (300)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.3E-68 2.8E-73 529.4 33.5 292 85-383 1-293 (293)
10 KOG1182 Branched chain alpha-k 100.0 7.1E-69 1.5E-73 513.8 24.2 355 42-405 47-406 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 3E-57 6.6E-62 498.5 33.8 312 76-400 185-527 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 4.9E-51 1.1E-55 447.7 32.7 311 75-391 184-522 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 1E-48 2.2E-53 378.5 19.9 237 95-337 1-264 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.9E-35 6.2E-40 316.3 30.4 307 74-385 487-820 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 4.7E-33 1E-37 298.4 21.0 227 72-325 10-249 (581)
16 KOG0450 2-oxoglutarate dehydro 100.0 6.2E-31 1.3E-35 272.9 22.9 316 76-398 245-587 (1017)
17 KOG0451 Predicted 2-oxoglutara 100.0 3.2E-29 6.9E-34 255.2 21.1 310 76-390 153-497 (913)
18 COG0567 SucA 2-oxoglutarate de 100.0 2.4E-28 5.3E-33 263.5 25.6 305 74-385 169-498 (906)
19 PRK12754 transketolase; Review 99.9 4.4E-25 9.5E-30 238.9 24.4 143 181-327 107-254 (663)
20 TIGR00232 tktlase_bact transke 99.9 2.1E-24 4.6E-29 234.5 23.1 143 181-328 103-251 (653)
21 COG0021 TktA Transketolase [Ca 99.9 1E-23 2.2E-28 220.8 23.0 298 115-427 32-381 (663)
22 PRK12753 transketolase; Review 99.9 1.2E-23 2.6E-28 228.7 23.7 144 181-328 107-255 (663)
23 PTZ00089 transketolase; Provis 99.9 3.1E-23 6.6E-28 225.7 26.0 222 110-342 27-276 (661)
24 PLN02790 transketolase 99.9 2.8E-23 6.1E-28 225.7 21.9 207 110-327 15-246 (654)
25 cd02012 TPP_TK Thiamine pyroph 99.9 3.6E-22 7.8E-27 194.1 21.8 137 182-328 99-236 (255)
26 cd02007 TPP_DXS Thiamine pyrop 99.9 1.7E-22 3.7E-27 188.9 18.7 124 183-323 70-194 (195)
27 TIGR03186 AKGDH_not_PDH alpha- 99.9 1.4E-21 3.1E-26 214.7 27.1 261 59-327 51-396 (889)
28 TIGR00759 aceE pyruvate dehydr 99.9 3.7E-21 8E-26 209.3 26.7 257 62-325 54-394 (885)
29 PRK05899 transketolase; Review 99.9 1.8E-21 3.9E-26 211.2 23.0 147 182-333 112-263 (624)
30 cd02017 TPP_E1_EcPDC_like Thia 99.9 5.8E-21 1.2E-25 193.0 24.8 210 108-325 29-323 (386)
31 COG3959 Transketolase, N-termi 99.9 4.8E-21 1E-25 178.2 21.6 193 110-320 31-242 (243)
32 PF00456 Transketolase_N: Tran 99.9 2.2E-21 4.7E-26 194.8 20.7 144 181-329 104-253 (332)
33 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 3.5E-21 7.5E-26 208.2 21.3 227 73-327 9-282 (617)
34 PRK05444 1-deoxy-D-xylulose-5- 99.9 3.9E-21 8.4E-26 206.9 21.0 236 65-327 7-250 (580)
35 cd02011 TPP_PK Thiamine pyroph 99.9 9.5E-22 2.1E-26 186.4 13.2 189 116-328 2-213 (227)
36 PRK13012 2-oxoacid dehydrogena 99.9 1.9E-20 4.2E-25 206.5 24.8 259 59-325 65-408 (896)
37 PRK11864 2-ketoisovalerate fer 99.9 1.4E-20 3.1E-25 185.6 18.5 233 138-384 14-297 (300)
38 PLN02234 1-deoxy-D-xylulose-5- 99.8 1.1E-19 2.3E-24 195.6 23.0 279 22-329 25-331 (641)
39 PRK09405 aceE pyruvate dehydro 99.8 2.1E-19 4.6E-24 197.7 24.9 259 61-327 59-403 (891)
40 PRK12571 1-deoxy-D-xylulose-5- 99.8 1.8E-19 4E-24 195.5 21.7 236 65-328 9-292 (641)
41 PLN02582 1-deoxy-D-xylulose-5- 99.8 2.4E-19 5.2E-24 194.3 22.3 236 64-328 33-329 (677)
42 cd02013 TPP_Xsc_like Thiamine 99.8 2.7E-20 5.8E-25 174.1 11.5 122 184-322 49-182 (196)
43 cd02006 TPP_Gcl Thiamine pyrop 99.8 4.4E-20 9.6E-25 173.4 11.8 122 184-321 53-196 (202)
44 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 1.3E-19 2.7E-24 165.8 12.3 116 184-318 44-171 (172)
45 cd02015 TPP_AHAS Thiamine pyro 99.8 2E-19 4.3E-24 166.7 11.0 117 184-320 46-175 (186)
46 cd02002 TPP_BFDC Thiamine pyro 99.8 8.9E-19 1.9E-23 160.8 12.2 114 185-318 47-178 (178)
47 cd00568 TPP_enzymes Thiamine p 99.8 9.4E-19 2E-23 158.1 10.4 118 182-318 40-168 (168)
48 PRK05261 putative phosphoketol 99.8 4.9E-18 1.1E-22 185.0 16.9 206 106-325 46-289 (785)
49 cd02003 TPP_IolD Thiamine pyro 99.8 3.6E-18 7.9E-23 160.8 12.3 119 184-321 44-186 (205)
50 cd02010 TPP_ALS Thiamine pyrop 99.8 1.9E-18 4.2E-23 159.2 9.5 118 184-320 44-171 (177)
51 PF13292 DXP_synthase_N: 1-deo 99.8 1.1E-17 2.4E-22 160.6 14.5 219 72-318 8-270 (270)
52 cd02008 TPP_IOR_alpha Thiamine 99.8 1E-17 2.2E-22 154.3 13.8 118 184-318 47-176 (178)
53 cd02014 TPP_POX Thiamine pyrop 99.7 7.3E-18 1.6E-22 155.2 11.9 118 184-320 47-174 (178)
54 COG1154 Dxs Deoxyxylulose-5-ph 99.7 4.6E-17 1E-21 170.2 18.5 235 64-327 4-287 (627)
55 cd03372 TPP_ComE Thiamine pyro 99.7 4.8E-17 1E-21 150.2 15.0 116 187-323 41-159 (179)
56 PRK06163 hypothetical protein; 99.7 2.8E-17 6.1E-22 154.6 12.8 131 187-340 56-190 (202)
57 PF02775 TPP_enzyme_C: Thiamin 99.7 5.3E-18 1.1E-22 152.1 6.5 115 184-316 24-153 (153)
58 TIGR01504 glyox_carbo_lig glyo 99.7 1.8E-17 3.9E-22 178.9 11.5 121 184-320 414-556 (588)
59 cd02005 TPP_PDC_IPDC Thiamine 99.7 3.2E-17 6.9E-22 151.8 11.6 119 184-320 46-175 (183)
60 COG0028 IlvB Thiamine pyrophos 99.7 3E-17 6.6E-22 175.3 11.3 120 182-321 402-533 (550)
61 cd02009 TPP_SHCHC_synthase Thi 99.7 1.8E-17 3.8E-22 152.4 7.9 114 184-318 47-174 (175)
62 cd03371 TPP_PpyrDC Thiamine py 99.7 6.8E-17 1.5E-21 150.4 11.2 118 187-323 47-167 (188)
63 PRK12474 hypothetical protein; 99.7 7E-17 1.5E-21 171.9 12.8 114 185-318 386-518 (518)
64 PRK07586 hypothetical protein; 99.7 4.5E-17 9.8E-22 173.0 11.4 114 185-318 382-514 (514)
65 cd02001 TPP_ComE_PpyrDC Thiami 99.7 5.4E-17 1.2E-21 146.8 10.0 113 187-319 41-155 (157)
66 PLN02225 1-deoxy-D-xylulose-5- 99.7 4.2E-16 9E-21 168.5 17.9 233 63-323 77-368 (701)
67 cd03375 TPP_OGFOR Thiamine pyr 99.7 1.9E-16 4.1E-21 147.9 13.1 120 184-321 47-186 (193)
68 PRK07524 hypothetical protein; 99.7 6.1E-17 1.3E-21 172.9 11.1 121 184-323 403-533 (535)
69 PRK07525 sulfoacetaldehyde ace 99.7 6.4E-17 1.4E-21 174.7 10.9 123 184-322 431-565 (588)
70 KOG0523 Transketolase [Carbohy 99.7 5.7E-16 1.2E-20 161.2 17.0 135 182-326 112-248 (632)
71 PRK11269 glyoxylate carboligas 99.7 8.9E-17 1.9E-21 173.6 11.6 122 184-320 415-557 (591)
72 PRK06154 hypothetical protein; 99.7 1.3E-16 2.7E-21 171.6 12.5 120 184-320 427-556 (565)
73 PRK06725 acetolactate synthase 99.7 1E-16 2.2E-21 172.5 11.5 151 150-320 373-546 (570)
74 PRK07418 acetolactate synthase 99.7 8.9E-17 1.9E-21 174.5 11.0 151 150-320 387-560 (616)
75 PRK07092 benzoylformate decarb 99.7 1.9E-16 4.1E-21 169.0 13.3 150 150-318 359-529 (530)
76 TIGR03457 sulphoacet_xsc sulfo 99.7 1.3E-16 2.8E-21 172.0 11.8 156 150-322 381-560 (579)
77 TIGR03846 sulfopy_beta sulfopy 99.7 1.4E-16 2.9E-21 147.5 10.1 113 187-320 41-157 (181)
78 PRK05858 hypothetical protein; 99.7 1.6E-16 3.5E-21 169.9 12.0 117 184-320 403-531 (542)
79 PRK09107 acetolactate synthase 99.7 1.1E-16 2.3E-21 173.1 10.7 117 184-320 426-555 (595)
80 PRK08979 acetolactate synthase 99.7 1.2E-16 2.6E-21 172.0 11.0 152 150-320 372-547 (572)
81 cd03376 TPP_PFOR_porB_like Thi 99.7 2.1E-16 4.6E-21 152.0 11.4 123 184-324 58-205 (235)
82 TIGR02418 acolac_catab acetola 99.7 1.8E-16 3.9E-21 169.5 11.9 118 184-321 404-532 (539)
83 PRK07979 acetolactate synthase 99.7 1.5E-16 3.4E-21 171.2 11.3 154 150-320 372-549 (574)
84 PRK08327 acetolactate synthase 99.7 2.9E-16 6.3E-21 169.0 12.2 122 184-318 426-566 (569)
85 PRK08527 acetolactate synthase 99.7 2.6E-16 5.7E-21 169.1 11.8 118 184-321 410-540 (563)
86 PRK06546 pyruvate dehydrogenas 99.7 2.9E-16 6.2E-21 169.3 11.8 116 185-320 405-531 (578)
87 PRK06965 acetolactate synthase 99.7 2.5E-16 5.5E-21 170.0 11.3 118 184-320 433-563 (587)
88 PRK06466 acetolactate synthase 99.7 3E-16 6.6E-21 169.0 11.8 151 150-320 374-549 (574)
89 TIGR03393 indolpyr_decarb indo 99.7 2.3E-16 4.9E-21 168.7 10.6 150 150-319 356-527 (539)
90 PRK07710 acetolactate synthase 99.7 2.3E-16 5.1E-21 169.7 10.7 117 184-320 420-549 (571)
91 PRK09124 pyruvate dehydrogenas 99.7 3.7E-16 8E-21 168.3 11.9 118 184-320 404-531 (574)
92 PRK08273 thiamine pyrophosphat 99.7 3.2E-16 7E-21 169.5 11.1 152 150-320 366-547 (597)
93 PRK08266 hypothetical protein; 99.7 3.2E-16 7E-21 167.5 10.9 122 184-324 398-530 (542)
94 PRK06048 acetolactate synthase 99.7 4E-16 8.7E-21 167.6 11.6 117 184-320 410-539 (561)
95 CHL00099 ilvB acetohydroxyacid 99.7 3.6E-16 7.8E-21 168.8 11.2 116 184-319 426-555 (585)
96 PRK06112 acetolactate synthase 99.7 5E-16 1.1E-20 167.4 12.1 116 185-320 434-561 (578)
97 PRK08617 acetolactate synthase 99.7 3.3E-16 7.2E-21 167.9 10.6 117 184-320 410-537 (552)
98 PRK06456 acetolactate synthase 99.6 4E-16 8.7E-21 167.9 11.0 117 184-320 417-546 (572)
99 TIGR02720 pyruv_oxi_spxB pyruv 99.6 4.8E-16 1E-20 167.5 11.2 120 184-320 404-533 (575)
100 PRK06882 acetolactate synthase 99.6 5.3E-16 1.2E-20 167.0 11.5 118 184-320 417-547 (574)
101 PLN02470 acetolactate synthase 99.6 4.2E-16 9E-21 168.3 10.7 117 184-320 422-558 (585)
102 PRK08155 acetolactate synthase 99.6 6.4E-16 1.4E-20 166.1 11.8 118 184-320 415-544 (564)
103 PRK08611 pyruvate oxidase; Pro 99.6 5.1E-16 1.1E-20 167.3 10.9 117 184-320 404-531 (576)
104 PRK08199 thiamine pyrophosphat 99.6 6.1E-16 1.3E-20 166.0 11.3 117 185-320 412-539 (557)
105 PRK06457 pyruvate dehydrogenas 99.6 5.1E-16 1.1E-20 166.4 10.6 117 184-320 392-520 (549)
106 PRK08322 acetolactate synthase 99.6 8.2E-16 1.8E-20 164.6 11.7 117 184-320 402-529 (547)
107 PRK07064 hypothetical protein; 99.6 7E-16 1.5E-20 165.0 11.1 117 183-319 400-528 (544)
108 PRK08978 acetolactate synthase 99.6 6.9E-16 1.5E-20 165.2 11.1 117 184-320 397-526 (548)
109 PRK05778 2-oxoglutarate ferred 99.6 2.2E-15 4.8E-20 149.5 13.5 134 187-341 69-223 (301)
110 PLN02573 pyruvate decarboxylas 99.6 9.8E-16 2.1E-20 165.2 10.9 117 184-318 424-551 (578)
111 TIGR00118 acolac_lg acetolacta 99.6 9.2E-16 2E-20 164.6 10.4 117 184-320 408-537 (558)
112 PRK09628 oorB 2-oxoglutarate-a 99.6 3.8E-15 8.2E-20 146.3 13.7 118 187-321 67-203 (277)
113 PRK07282 acetolactate synthase 99.6 8.6E-16 1.9E-20 165.2 9.7 116 184-320 414-542 (566)
114 PRK07789 acetolactate synthase 99.6 2.2E-15 4.9E-20 163.4 10.6 118 184-320 443-577 (612)
115 PRK06276 acetolactate synthase 99.6 2.4E-15 5.2E-20 162.4 10.4 116 185-320 416-544 (586)
116 TIGR03394 indol_phenyl_DC indo 99.6 2.6E-15 5.6E-20 160.5 9.6 149 150-318 356-520 (535)
117 TIGR03254 oxalate_oxc oxalyl-C 99.6 7E-15 1.5E-19 157.8 12.0 116 184-320 413-539 (554)
118 PRK09259 putative oxalyl-CoA d 99.6 1.1E-14 2.4E-19 156.8 12.1 116 184-320 420-547 (569)
119 PRK11867 2-oxoglutarate ferred 99.6 2.1E-14 4.5E-19 141.8 12.9 118 186-320 67-203 (286)
120 PRK11866 2-oxoacid ferredoxin 99.6 1.5E-14 3.3E-19 142.1 11.6 119 185-320 56-193 (279)
121 PRK11869 2-oxoacid ferredoxin 99.6 2.1E-14 4.5E-19 141.1 12.2 119 186-321 58-195 (280)
122 cd02018 TPP_PFOR Thiamine pyro 99.6 1E-14 2.2E-19 140.6 9.6 121 186-319 62-203 (237)
123 TIGR03297 Ppyr-DeCO2ase phosph 99.5 3.2E-14 7E-19 144.7 12.4 131 187-339 220-354 (361)
124 COG2609 AceE Pyruvate dehydrog 99.5 1.9E-12 4.1E-17 136.7 24.7 258 60-325 55-397 (887)
125 PRK11865 pyruvate ferredoxin o 99.5 4.6E-13 1E-17 132.5 18.1 186 180-379 61-295 (299)
126 TIGR02177 PorB_KorB 2-oxoacid: 99.5 1.3E-13 2.8E-18 135.9 13.2 118 185-320 50-187 (287)
127 PRK07449 2-succinyl-5-enolpyru 99.5 2.6E-14 5.7E-19 153.7 8.0 114 185-318 422-548 (568)
128 TIGR03336 IOR_alpha indolepyru 99.5 2.5E-13 5.5E-18 147.0 12.6 161 141-318 353-529 (595)
129 KOG4166 Thiamine pyrophosphate 99.4 7.5E-13 1.6E-17 133.2 8.2 151 150-321 472-649 (675)
130 COG3961 Pyruvate decarboxylase 99.4 3E-12 6.5E-17 132.2 12.1 162 116-320 363-536 (557)
131 KOG1185 Thiamine pyrophosphate 99.3 1.6E-11 3.5E-16 125.5 12.9 118 184-319 426-560 (571)
132 PLN02980 2-oxoglutarate decarb 99.3 3.9E-12 8.5E-17 151.2 8.4 118 184-321 755-891 (1655)
133 PF09364 XFP_N: XFP N-terminal 99.2 5.7E-12 1.2E-16 125.6 5.0 203 107-326 45-288 (379)
134 COG3962 Acetolactate synthase 99.1 3.6E-10 7.8E-15 115.3 12.0 158 116-319 395-575 (617)
135 COG3960 Glyoxylate carboligase 99.0 4.3E-10 9.3E-15 110.7 7.3 157 155-327 378-564 (592)
136 COG1013 PorB Pyruvate:ferredox 98.9 2.2E-08 4.7E-13 99.4 15.6 121 183-320 65-205 (294)
137 KOG1184 Thiamine pyrophosphate 98.9 5.9E-09 1.3E-13 107.8 8.6 118 186-318 413-538 (561)
138 cd03377 TPP_PFOR_PNO Thiamine 98.6 1.2E-06 2.7E-11 88.7 17.3 98 218-321 152-269 (365)
139 COG3957 Phosphoketolase [Carbo 98.5 2.7E-07 5.8E-12 98.7 6.8 177 107-298 58-257 (793)
140 COG4231 Indolepyruvate ferredo 97.8 0.00012 2.6E-09 78.3 10.6 120 180-317 420-552 (640)
141 TIGR02176 pyruv_ox_red pyruvat 97.7 0.00021 4.6E-09 83.1 11.6 98 218-321 952-1069(1165)
142 COG1165 MenD 2-succinyl-6-hydr 97.5 0.00018 3.9E-09 76.0 6.6 109 193-321 427-548 (566)
143 PRK13030 2-oxoacid ferredoxin 97.3 0.00088 1.9E-08 77.4 9.7 120 183-316 463-600 (1159)
144 PRK09193 indolepyruvate ferred 97.2 0.0018 4E-08 74.7 10.5 119 185-316 478-614 (1165)
145 PRK13029 2-oxoacid ferredoxin 96.9 0.0031 6.6E-08 72.9 9.3 120 184-316 491-628 (1186)
146 cd06586 TPP_enzyme_PYR Pyrimid 96.5 0.023 5E-07 50.1 10.0 105 193-316 47-152 (154)
147 cd07039 TPP_PYR_POX Pyrimidine 96.4 0.033 7.2E-07 50.7 10.5 92 218-316 65-156 (164)
148 cd07035 TPP_PYR_POX_like Pyrim 96.2 0.051 1.1E-06 48.3 10.3 85 225-316 68-153 (155)
149 PF02776 TPP_enzyme_N: Thiamin 96.0 0.049 1.1E-06 49.7 9.7 92 220-317 68-160 (172)
150 TIGR03845 sulfopyru_alph sulfo 95.9 0.1 2.2E-06 47.3 11.1 107 191-316 44-152 (157)
151 cd07038 TPP_PYR_PDC_IPDC_like 95.7 0.079 1.7E-06 48.1 9.6 93 219-316 60-160 (162)
152 cd07034 TPP_PYR_PFOR_IOR-alpha 95.4 0.12 2.6E-06 46.3 9.7 91 219-316 67-158 (160)
153 PRK08659 2-oxoglutarate ferred 94.6 0.23 5E-06 51.3 10.2 114 193-326 60-177 (376)
154 PRK07119 2-ketoisovalerate fer 94.4 0.26 5.5E-06 50.5 9.9 114 193-325 60-176 (352)
155 cd07037 TPP_PYR_MenD Pyrimidin 94.4 0.3 6.4E-06 44.5 9.3 93 218-317 62-161 (162)
156 PRK08611 pyruvate oxidase; Pro 93.3 0.8 1.7E-05 49.9 11.7 93 218-317 70-162 (576)
157 TIGR03254 oxalate_oxc oxalyl-C 92.9 0.76 1.6E-05 49.7 10.9 95 218-317 67-162 (554)
158 PRK06457 pyruvate dehydrogenas 92.8 0.9 1.9E-05 49.1 11.2 93 218-317 66-158 (549)
159 PRK07064 hypothetical protein; 92.8 0.75 1.6E-05 49.5 10.6 95 218-317 68-164 (544)
160 PRK09627 oorA 2-oxoglutarate-a 92.7 0.65 1.4E-05 48.0 9.5 115 193-326 59-176 (375)
161 TIGR03457 sulphoacet_xsc sulfo 92.5 1 2.2E-05 49.0 11.2 93 217-317 65-158 (579)
162 PRK06112 acetolactate synthase 92.4 0.95 2.1E-05 49.2 10.8 94 217-317 75-169 (578)
163 PRK07979 acetolactate synthase 92.4 0.98 2.1E-05 49.1 10.9 95 217-318 68-163 (574)
164 PRK09259 putative oxalyl-CoA d 92.2 1.2 2.6E-05 48.4 11.4 94 218-317 74-169 (569)
165 PRK06466 acetolactate synthase 92.2 1.1 2.4E-05 48.7 11.0 94 218-318 69-163 (574)
166 PRK06725 acetolactate synthase 92.2 1.1 2.3E-05 48.9 10.8 94 218-318 79-173 (570)
167 PRK07418 acetolactate synthase 92.1 1.1 2.4E-05 49.1 11.1 92 218-317 87-180 (616)
168 TIGR03710 OAFO_sf 2-oxoacid:ac 92.1 0.73 1.6E-05 50.2 9.5 110 193-320 249-362 (562)
169 PRK08155 acetolactate synthase 92.1 1.1 2.3E-05 48.7 10.8 92 219-317 79-171 (564)
170 TIGR03297 Ppyr-DeCO2ase phosph 92.1 0.67 1.4E-05 47.7 8.6 114 189-316 34-150 (361)
171 PRK07524 hypothetical protein; 91.9 1.3 2.9E-05 47.6 11.2 95 218-317 66-162 (535)
172 PRK07789 acetolactate synthase 91.9 1.3 2.8E-05 48.6 11.1 94 217-318 95-190 (612)
173 PRK06456 acetolactate synthase 91.8 1.4 3.1E-05 47.8 11.4 92 219-317 71-163 (572)
174 PRK07525 sulfoacetaldehyde ace 91.8 1.3 2.8E-05 48.4 11.0 92 218-317 70-162 (588)
175 PRK08978 acetolactate synthase 91.8 1.5 3.2E-05 47.4 11.3 93 217-317 64-158 (548)
176 PRK07586 hypothetical protein; 91.8 1.3 2.8E-05 47.4 10.8 94 218-318 66-160 (514)
177 TIGR01504 glyox_carbo_lig glyo 91.7 1.2 2.5E-05 48.7 10.5 93 219-318 70-163 (588)
178 PRK11269 glyoxylate carboligas 91.5 1.3 2.9E-05 48.3 10.7 93 219-318 71-164 (591)
179 PLN02470 acetolactate synthase 91.5 1.3 2.8E-05 48.3 10.6 94 218-318 78-172 (585)
180 COG0028 IlvB Thiamine pyrophos 91.4 1.4 2.9E-05 48.0 10.6 95 215-317 63-159 (550)
181 TIGR00118 acolac_lg acetolacta 91.4 1.8 3.8E-05 46.9 11.5 92 218-317 66-159 (558)
182 PRK09107 acetolactate synthase 91.3 1.3 2.8E-05 48.5 10.3 93 218-317 76-169 (595)
183 PRK08266 hypothetical protein; 91.1 1.8 3.8E-05 46.7 11.1 96 218-318 70-167 (542)
184 PRK06276 acetolactate synthase 91.1 1.6 3.5E-05 47.6 10.8 93 218-317 65-158 (586)
185 PRK07710 acetolactate synthase 91.1 1.7 3.8E-05 47.1 11.1 94 218-318 80-174 (571)
186 PRK07282 acetolactate synthase 91.1 1.8 4E-05 47.0 11.2 93 218-318 75-169 (566)
187 PF01855 POR_N: Pyruvate flavo 90.8 0.85 1.8E-05 44.0 7.5 111 193-325 48-160 (230)
188 PRK08199 thiamine pyrophosphat 90.5 1.9 4.1E-05 46.7 10.7 93 218-317 73-166 (557)
189 PRK08366 vorA 2-ketoisovalerat 90.5 2 4.4E-05 44.6 10.4 111 193-323 61-171 (390)
190 PRK06882 acetolactate synthase 90.4 2.1 4.6E-05 46.4 11.0 94 218-318 69-163 (574)
191 PRK12474 hypothetical protein; 90.4 1.9 4.2E-05 46.2 10.6 94 218-318 70-164 (518)
192 PRK08322 acetolactate synthase 90.4 2 4.4E-05 46.2 10.7 94 218-318 65-159 (547)
193 PRK09124 pyruvate dehydrogenas 90.2 2.5 5.5E-05 45.9 11.3 94 217-317 65-160 (574)
194 PRK08979 acetolactate synthase 90.0 2.1 4.6E-05 46.5 10.6 93 218-317 69-162 (572)
195 cd07033 TPP_PYR_DXS_TK_like Py 89.9 1.7 3.8E-05 38.9 8.3 100 193-316 51-154 (156)
196 PRK06048 acetolactate synthase 89.8 2.8 6.1E-05 45.4 11.3 93 218-317 72-165 (561)
197 TIGR03394 indol_phenyl_DC indo 89.7 1.9 4E-05 46.6 9.7 97 217-318 64-164 (535)
198 PRK08527 acetolactate synthase 89.7 2.6 5.5E-05 45.8 10.8 95 217-318 67-162 (563)
199 PRK08273 thiamine pyrophosphat 89.6 2 4.2E-05 47.1 9.9 93 218-318 69-163 (597)
200 PRK05858 hypothetical protein; 89.4 2.8 6.1E-05 45.2 10.9 92 218-317 69-162 (542)
201 PRK06965 acetolactate synthase 89.4 3.3 7.1E-05 45.2 11.4 93 218-318 86-180 (587)
202 TIGR02720 pyruv_oxi_spxB pyruv 89.3 3.2 6.9E-05 45.2 11.3 94 217-318 64-158 (575)
203 TIGR02418 acolac_catab acetola 89.2 3 6.5E-05 44.9 10.9 94 218-318 63-157 (539)
204 PRK08617 acetolactate synthase 89.1 2.7 5.9E-05 45.4 10.5 93 218-318 69-163 (552)
205 CHL00099 ilvB acetohydroxyacid 89.0 3 6.6E-05 45.5 10.9 92 218-317 78-171 (585)
206 PRK07092 benzoylformate decarb 88.5 3.2 6.9E-05 44.7 10.5 95 217-317 74-169 (530)
207 PRK08327 acetolactate synthase 88.3 2.2 4.7E-05 46.4 9.1 95 218-317 77-179 (569)
208 PRK06546 pyruvate dehydrogenas 87.9 4.6 9.9E-05 44.0 11.3 91 219-317 69-160 (578)
209 COG0674 PorA Pyruvate:ferredox 87.6 4 8.6E-05 42.1 10.1 111 192-321 58-168 (365)
210 PRK09622 porA pyruvate flavodo 87.0 3.8 8.1E-05 42.9 9.6 107 193-320 68-177 (407)
211 PRK08367 porA pyruvate ferredo 86.2 5.8 0.00013 41.3 10.5 111 193-325 62-175 (394)
212 PLN02573 pyruvate decarboxylas 86.0 5.3 0.00012 43.6 10.6 97 217-318 79-181 (578)
213 PRK06154 hypothetical protein; 85.4 4.6 0.0001 43.9 9.7 90 220-318 85-175 (565)
214 TIGR00173 menD 2-succinyl-5-en 84.8 2.8 6.1E-05 43.9 7.4 95 218-318 65-165 (432)
215 KOG4166 Thiamine pyrophosphate 82.7 8.4 0.00018 40.4 9.5 93 215-316 153-248 (675)
216 cd01460 vWA_midasin VWA_Midasi 82.5 20 0.00043 35.4 11.8 85 219-304 166-258 (266)
217 cd07036 TPP_PYR_E1-PDHc-beta_l 81.6 6.3 0.00014 36.0 7.5 99 193-315 56-164 (167)
218 TIGR03336 IOR_alpha indolepyru 78.5 12 0.00026 41.0 9.8 109 193-325 58-168 (595)
219 TIGR00232 tktlase_bact transke 78.2 12 0.00025 41.7 9.6 80 228-316 430-512 (653)
220 PLN02980 2-oxoglutarate decarb 78.1 6 0.00013 48.6 7.9 106 194-317 352-465 (1655)
221 TIGR00204 dxs 1-deoxy-D-xylulo 77.9 13 0.00028 41.0 9.8 102 193-316 364-467 (617)
222 PF02779 Transket_pyr: Transke 77.9 13 0.00029 33.9 8.5 107 193-316 60-170 (178)
223 COG4032 Predicted thiamine-pyr 76.3 5 0.00011 35.9 4.8 109 192-316 53-161 (172)
224 PTZ00089 transketolase; Provis 74.8 16 0.00036 40.6 9.6 90 218-316 429-519 (661)
225 TIGR03393 indolpyr_decarb indo 70.0 24 0.00052 38.0 9.4 94 218-318 65-165 (539)
226 PLN02683 pyruvate dehydrogenas 68.9 33 0.00071 35.3 9.6 100 193-316 86-195 (356)
227 PLN02790 transketolase 68.7 28 0.00062 38.7 9.7 77 234-316 432-509 (654)
228 PRK11892 pyruvate dehydrogenas 67.4 25 0.00055 37.5 8.6 99 193-315 201-309 (464)
229 PRK12571 1-deoxy-D-xylulose-5- 67.1 29 0.00063 38.6 9.3 101 193-316 373-476 (641)
230 PRK12315 1-deoxy-D-xylulose-5- 66.4 22 0.00048 38.9 8.2 102 193-316 332-434 (581)
231 PLN02234 1-deoxy-D-xylulose-5- 66.1 32 0.00069 38.3 9.3 106 193-322 411-518 (641)
232 PRK05444 1-deoxy-D-xylulose-5- 65.9 35 0.00075 37.4 9.6 102 193-316 333-436 (580)
233 PLN02582 1-deoxy-D-xylulose-5- 65.5 25 0.00053 39.4 8.4 102 193-316 410-513 (677)
234 smart00861 Transket_pyr Transk 64.7 28 0.00061 31.2 7.4 101 193-316 61-164 (168)
235 TIGR02176 pyruv_ox_red pyruvat 63.7 46 0.001 39.7 10.6 113 193-325 63-175 (1165)
236 PLN02225 1-deoxy-D-xylulose-5- 62.5 32 0.00068 38.6 8.5 102 193-316 435-538 (701)
237 PRK12753 transketolase; Review 60.1 55 0.0012 36.6 9.9 90 218-316 428-518 (663)
238 PRK05899 transketolase; Review 58.9 45 0.00098 36.8 9.0 75 233-316 405-483 (624)
239 PRK13010 purU formyltetrahydro 56.9 43 0.00092 33.4 7.6 54 216-288 93-149 (289)
240 PRK07449 2-succinyl-5-enolpyru 55.8 32 0.0007 37.2 7.2 34 218-254 74-107 (568)
241 PTZ00182 3-methyl-2-oxobutanat 54.6 51 0.0011 33.8 8.0 99 193-315 94-202 (355)
242 PRK12754 transketolase; Review 53.8 79 0.0017 35.4 9.8 82 228-316 436-518 (663)
243 PF04273 DUF442: Putative phos 52.7 37 0.00079 28.9 5.5 76 235-318 17-95 (110)
244 TIGR00655 PurU formyltetrahydr 51.5 63 0.0014 32.1 7.8 56 215-289 83-141 (280)
245 PRK09212 pyruvate dehydrogenas 51.3 63 0.0014 32.7 8.0 63 245-317 110-173 (327)
246 COG0299 PurN Folate-dependent 50.1 84 0.0018 29.7 7.9 84 218-319 2-88 (200)
247 PLN02331 phosphoribosylglycina 49.7 74 0.0016 30.1 7.7 54 219-289 2-58 (207)
248 PRK11032 hypothetical protein; 48.8 63 0.0014 29.5 6.7 40 347-386 30-69 (160)
249 COG3453 Uncharacterized protei 47.7 45 0.00097 29.1 5.2 45 270-318 48-96 (130)
250 COG0021 TktA Transketolase [Ca 47.5 72 0.0016 35.3 7.9 78 234-316 441-518 (663)
251 COG3958 Transketolase, C-termi 46.0 64 0.0014 32.4 6.7 103 193-316 61-165 (312)
252 PRK06027 purU formyltetrahydro 45.0 88 0.0019 31.1 7.7 55 215-288 88-145 (286)
253 TIGR00239 2oxo_dh_E1 2-oxoglut 44.2 3E+02 0.0066 32.1 12.7 113 193-322 659-780 (929)
254 cd01451 vWA_Magnesium_chelatas 44.1 2.3E+02 0.005 25.4 9.9 70 218-296 99-174 (178)
255 COG1240 ChlD Mg-chelatase subu 43.4 1.7E+02 0.0036 28.9 9.1 75 217-298 177-256 (261)
256 PF13519 VWA_2: von Willebrand 42.9 84 0.0018 27.0 6.6 71 217-298 99-169 (172)
257 PF08640 U3_assoc_6: U3 small 41.8 58 0.0013 26.3 4.8 41 353-398 10-50 (83)
258 COG2205 KdpD Osmosensitive K+ 41.0 55 0.0012 37.3 6.0 97 217-320 249-345 (890)
259 PRK13683 hypothetical protein; 39.4 49 0.0011 27.0 3.9 41 279-323 13-53 (87)
260 COG0777 AccD Acetyl-CoA carbox 39.2 91 0.002 31.0 6.5 65 186-255 130-205 (294)
261 PF09851 SHOCT: Short C-termin 38.8 48 0.001 21.5 3.2 26 346-372 4-29 (31)
262 PRK13406 bchD magnesium chelat 38.7 2.1E+02 0.0045 31.6 10.0 98 191-301 473-582 (584)
263 PF06707 DUF1194: Protein of u 38.4 3.1E+02 0.0066 26.1 9.8 79 216-302 115-198 (205)
264 PRK09404 sucA 2-oxoglutarate d 35.1 3.5E+02 0.0075 31.7 11.4 108 193-316 657-770 (924)
265 COG0769 MurE UDP-N-acetylmuram 35.1 2.3E+02 0.0051 30.3 9.5 147 146-325 302-450 (475)
266 COG1107 Archaea-specific RecJ- 33.4 55 0.0012 35.8 4.3 52 234-294 404-457 (715)
267 COG3962 Acetolactate synthase 33.4 53 0.0011 35.1 4.1 32 219-253 86-117 (617)
268 CHL00144 odpB pyruvate dehydro 32.3 1.9E+02 0.0042 29.2 8.0 32 280-315 139-171 (327)
269 COG1303 Uncharacterized protei 32.3 86 0.0019 28.7 4.8 47 269-318 20-66 (179)
270 cd00640 Trp-synth-beta_II Tryp 32.2 1.8E+02 0.004 27.4 7.6 62 238-315 66-127 (244)
271 PF04431 Pec_lyase_N: Pectate 31.6 56 0.0012 24.5 2.9 31 367-397 4-34 (56)
272 PF01380 SIS: SIS domain SIS d 31.5 1.9E+02 0.0041 23.9 6.8 39 215-255 52-90 (131)
273 COG1154 Dxs Deoxyxylulose-5-ph 31.3 2.6E+02 0.0056 30.9 9.0 94 217-323 382-478 (627)
274 KOG1184 Thiamine pyrophosphate 30.7 1.1E+02 0.0024 33.1 6.0 96 218-318 68-169 (561)
275 PRK05647 purN phosphoribosylgl 30.7 2.4E+02 0.0053 26.3 7.9 55 218-289 3-60 (200)
276 cd01453 vWA_transcription_fact 29.9 4E+02 0.0086 24.3 9.1 69 217-299 107-176 (183)
277 TIGR02442 Cob-chelat-sub cobal 29.3 2.1E+02 0.0046 31.7 8.3 86 192-286 539-632 (633)
278 PLN02828 formyltetrahydrofolat 28.1 3.1E+02 0.0067 27.1 8.4 59 216-288 70-131 (268)
279 PF10667 DUF2486: Protein of u 27.8 74 0.0016 30.8 3.8 70 289-385 172-241 (246)
280 COG4231 Indolepyruvate ferredo 27.1 4.9E+02 0.011 29.0 10.2 165 115-327 16-182 (640)
281 PRK06381 threonine synthase; V 26.0 3.7E+02 0.0081 26.6 8.8 39 239-289 80-118 (319)
282 PRK06702 O-acetylhomoserine am 25.9 1.1E+02 0.0025 32.2 5.2 45 91-138 62-106 (432)
283 PF02979 NHase_alpha: Nitrile 25.7 1.3E+02 0.0028 28.1 4.9 39 347-385 9-52 (188)
284 TIGR03590 PseG pseudaminic aci 24.8 2.8E+02 0.006 27.1 7.5 35 221-255 2-41 (279)
285 PF02110 HK: Hydroxyethylthiaz 23.8 1.6E+02 0.0034 28.8 5.3 75 242-317 4-87 (246)
286 COG3960 Glyoxylate carboligase 23.4 1.3E+02 0.0029 30.8 4.8 94 216-318 66-164 (592)
287 TIGR00173 menD 2-succinyl-5-en 23.1 38 0.00082 35.5 1.0 53 150-202 367-431 (432)
288 TIGR00639 PurN phosphoribosylg 22.6 2.4E+02 0.0052 26.2 6.2 54 218-287 2-57 (190)
289 COG2515 Acd 1-aminocyclopropan 22.5 3E+02 0.0064 28.0 7.0 108 220-343 66-176 (323)
290 PRK13011 formyltetrahydrofolat 22.4 3.8E+02 0.0082 26.7 7.9 52 217-287 90-144 (286)
291 COG3707 AmiR Response regulato 22.2 4.7E+02 0.01 24.7 7.9 105 232-372 63-173 (194)
292 KOG0369 Pyruvate carboxylase [ 22.2 2.2E+02 0.0047 32.1 6.4 74 219-318 160-235 (1176)
293 TIGR03186 AKGDH_not_PDH alpha- 21.9 4.7E+02 0.01 30.5 9.3 87 227-316 598-688 (889)
294 PRK10490 sensor protein KdpD; 21.7 2.9E+02 0.0064 32.0 7.9 94 217-318 251-345 (895)
295 PF00140 Sigma70_r1_2: Sigma-7 21.6 1.4E+02 0.003 20.1 3.2 33 345-377 2-34 (37)
296 cd08325 CARD_CASP1-like Caspas 21.6 2.1E+02 0.0045 22.9 4.8 39 343-381 14-52 (83)
297 cd05710 SIS_1 A subgroup of th 21.3 1.7E+02 0.0038 24.5 4.6 40 215-256 46-85 (120)
298 PLN03013 cysteine synthase 21.0 2.6E+02 0.0056 29.6 6.7 11 243-253 196-206 (429)
299 KOG3107 Predicted haloacid deh 21.0 1.2E+02 0.0027 31.5 4.1 28 217-251 423-450 (468)
300 PRK13034 serine hydroxymethylt 20.9 1.4E+02 0.003 31.1 4.7 56 92-149 72-131 (416)
301 PRK11658 UDP-4-amino-4-deoxy-L 20.8 3.8E+02 0.0083 27.2 7.9 44 92-138 35-79 (379)
302 COG2873 MET17 O-acetylhomoseri 20.6 1.4E+02 0.003 31.2 4.4 45 91-138 63-107 (426)
303 PF10925 DUF2680: Protein of u 20.5 3.8E+02 0.0082 20.2 5.8 30 350-379 23-52 (59)
304 PRK06988 putative formyltransf 20.4 3E+02 0.0065 27.6 6.8 58 221-287 5-62 (312)
No 1
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1.4e-94 Score=743.14 Aligned_cols=425 Identities=84% Similarity=1.301 Sum_probs=394.6
Q ss_pred CcccccccccccccccCCcCCCCCCCCCCCCCCCCCCCccCCccceeeeccCCCCCCcccccccccchhhh--hc-----
Q 014288 1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVV--KE----- 73 (427)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 73 (427)
|+++|+.+++..++|.+++. .+....+++.+.+++++|+|+++++.-.+. ....++++|.....+.... .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (433)
T PLN02374 1 MAAAFAATSLLVPVPARSSR-DDAPSSPLRGALKRSSAFTGSTSKLSSLRG-LNAANGRRRSTVVAVSAVVKEKNSKASA 78 (433)
T ss_pred CccccccccccccccccccC-CCCCCCccccccccchhhhccccccccccC-ccccccchhcchhcccccccccCCCCCC
Confidence 78899999999999999986 677788999999999999999988633222 2222566666554444432 11
Q ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCH
Q 014288 74 -KKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA 152 (427)
Q Consensus 74 -~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~ 152 (427)
++.+++|+++++|++|+++|.||+++.++|++|+++|++|++.||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 2578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCc
Q 014288 153 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 232 (427)
Q Consensus 153 ~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G 232 (427)
+++|+|++|+.+++++|++|+||++++++++.+.+++||+++|+|+|+|+|.|++++.++...++++||||+|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999999999999999999999999999999999986544444568899999999999999
Q ss_pred cHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 014288 233 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 312 (427)
Q Consensus 233 ~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~ 312 (427)
.|||+||+|+.|+|||||||+||+|+|+++...++..+++++++++||+++++|||+|+++|++++++|++++|++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999988887788999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 014288 313 LVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 392 (427)
Q Consensus 313 lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 392 (427)
|||+.|||+.||+++|++.||+++|+++|.++|||.+|+++|+++|++|++++++++++++++|++++++|+++|.|+++
T Consensus 319 LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~ 398 (433)
T PLN02374 319 LVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRS 398 (433)
T ss_pred EEEEEEEecCCcCCCCccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCCCCCCCCcccccCCCcccccCCC
Q 014288 393 QLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 427 (427)
Q Consensus 393 ~~~~~vya~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (427)
++|++||+++++++|+|||+|+||+|+||+|||+|
T Consensus 399 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (433)
T PLN02374 399 QLLENVFADPKGFGIGPDGRYRCEDPKFTAGTAQV 433 (433)
T ss_pred HHHhccccCCcCCccCCCcceeccCCCcccccccC
Confidence 99999999999999999999999999999999997
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.5e-85 Score=651.60 Aligned_cols=324 Identities=50% Similarity=0.820 Sum_probs=313.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCC-CEEEcCCcchHHHHhcCCCHHH
Q 014288 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPARA 154 (427)
Q Consensus 76 ~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~-D~v~~~yR~~~~~La~g~~~~~ 154 (427)
.+++++++++|++|+++|.||+++..++++||+.||+|++.||||+++|++.+|+++ ||++|+||+|++.|++|+++.+
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~ 102 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKE 102 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHH
Confidence 689999999999999999999999999999999999999999999999999999965 9999999999999999999999
Q ss_pred HHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccH
Q 014288 155 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 234 (427)
Q Consensus 155 ~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~ 234 (427)
+|++++|+.+|+|+|++|++|+++++.++.+.++++|.|+|+|+|+|+|.|+++ ..+.+++|++|||++++|+|
T Consensus 103 ~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~------~~~~Va~~~~GDGat~qG~F 176 (358)
T COG1071 103 IMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRG------TKDGVAVAFFGDGATNQGDF 176 (358)
T ss_pred HHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhC------CCCcEEEEEecCCccccchH
Confidence 999999999999999999999999999999999999999999999999999984 24459999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 014288 235 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 314 (427)
Q Consensus 235 ~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lI 314 (427)
||+||+|+.|+|||||||+||+|+||++...|.....+..++.+||+|+++|||+|+.+|++++++|+++||+++||+||
T Consensus 177 hEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLI 256 (358)
T COG1071 177 HEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLI 256 (358)
T ss_pred HHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999999999999999999999999888878777778889999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCC-CCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 014288 315 ECETYRFRGHSLADP-DELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQ 393 (427)
Q Consensus 315 e~~t~R~~gHs~~D~-~~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~~ 393 (427)
|++|||..|||++|+ ..||+++|+++|+.+|||.+++++|++.|++|++++++|+++++++|++|+++|+++|.|++++
T Consensus 257 E~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~ 336 (358)
T COG1071 257 EAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSE 336 (358)
T ss_pred EEEEeecCCCCCCCCccccCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Confidence 999999999999988 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCC
Q 014288 394 LLENVFADPKGF 405 (427)
Q Consensus 394 ~~~~vya~~~~~ 405 (427)
+|++||++.+..
T Consensus 337 ~~~~Vy~~~~~~ 348 (358)
T COG1071 337 LFEDVYAEGPPH 348 (358)
T ss_pred hhhcccccCChh
Confidence 999999998775
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=4e-81 Score=631.78 Aligned_cols=334 Identities=43% Similarity=0.750 Sum_probs=320.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHH
Q 014288 75 KLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA 154 (427)
Q Consensus 75 ~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~ 154 (427)
+.+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++||+|++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccH
Q 014288 155 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 234 (427)
Q Consensus 155 ~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~ 234 (427)
+|+|++|+.+|+++|++|+||+++++.++.+.++++|.++|+|+|+|+|.|++ +.+.+++|++|||++++|.|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~-------~~~~v~v~~~GDGa~~eG~~ 177 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYN-------KEENVAFALYGDGAANQGQL 177 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHh-------CCCCeEEEEECCCCcccCHH
Confidence 99999999999999999999999999999999999999999999999999988 46889999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 014288 235 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 314 (427)
Q Consensus 235 ~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lI 314 (427)
||+||+|+.|+||+||||+||+|+++++...+...+.+++++ +++|+++|||+|+++|+++++.|++++|+ +||+||
T Consensus 178 ~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lI 254 (362)
T PLN02269 178 FEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVL 254 (362)
T ss_pred HHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEE
Confidence 999999999999999999999999999988887777777654 67999999999999999999999999999 999999
Q ss_pred EEEEecCCCCCCCCCC-CCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 014288 315 ECETYRFRGHSLADPD-ELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 392 (427)
Q Consensus 315 e~~t~R~~gHs~~D~~-~yR~~~e~~~~~-~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 392 (427)
|++|||+.|||++|++ .||+++|++.|. .+|||.+|+++|+++|++|++++++++++++++|++++++|+++|.|+++
T Consensus 255 e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~ 334 (362)
T PLN02269 255 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPS 334 (362)
T ss_pred EEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999986 899999999997 59999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCC-CCCCCCCcccccC-C
Q 014288 393 QLLENVFADPKG-FGIGPDGRYRCED-P 418 (427)
Q Consensus 393 ~~~~~vya~~~~-~~~~~~~~~~~~~-~ 418 (427)
++|+|||+++.+ ..|++|++|+||+ |
T Consensus 335 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~ 362 (362)
T PLN02269 335 ELFTNVYVKGLGVESYGADRKEVRVVLP 362 (362)
T ss_pred HHHhhcccCCCCCceecCCcceecCcCC
Confidence 999999998867 5899999999998 5
No 4
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.6e-81 Score=604.36 Aligned_cols=338 Identities=47% Similarity=0.802 Sum_probs=327.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHH
Q 014288 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAV 155 (427)
Q Consensus 76 ~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~ 155 (427)
.+++|+.+++|++|+++|+||..+.++|++++|+||+|+|.||||++||+..+|++.|.|+++||+|++.+.+|+++.++
T Consensus 55 ~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v 134 (394)
T KOG0225|consen 55 ELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREV 134 (394)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHH
Q 014288 156 MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFF 235 (427)
Q Consensus 156 ~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~ 235 (427)
|+||+|+.+|+++|.|||||++.+. |.+++|++|.|+|++.|+|+|.||++ .+.+++++.|||+.|||+++
T Consensus 135 ~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~-------~~~v~~alYGDGAaNQGQ~f 205 (394)
T KOG0225|consen 135 LAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNR-------EDAVCFALYGDGAANQGQVF 205 (394)
T ss_pred HHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhcc-------CCceEEEEeccccccchhHH
Confidence 9999999999999999999999874 99999999999999999999999984 67899999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 236 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 236 EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
|++|||..|+||+||||+||.|+++|+..+....+++.+++ .| +|+++|||.|+.+|++|.+.|.+++++++||.++|
T Consensus 206 Ea~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE 283 (394)
T KOG0225|consen 206 EAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILME 283 (394)
T ss_pred HHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999999999999999999999988899999998 45 99999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCC-CCCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 014288 316 CETYRFRGHSLADP-DELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQ 393 (427)
Q Consensus 316 ~~t~R~~gHs~~D~-~~yR~~~e~~~~~-~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~~ 393 (427)
+.|||..|||++|| ..||+.+|+++.+ +||||..++++|++.++.|++|+++|+++++++|++++++|+++|.|++++
T Consensus 284 ~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~e 363 (394)
T KOG0225|consen 284 MDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSE 363 (394)
T ss_pred EeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 99999999999999 5799999999987 889999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCCCcccccCCCcccccC
Q 014288 394 LLENVFADPKGFGIGPDGRYRCEDPKFTEGTA 425 (427)
Q Consensus 394 ~~~~vya~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (427)
||.|||.+..++.+.+ |+|+|+.+.|..|++
T Consensus 364 L~~dvy~~~~~~~~~g-~~~~~~~~~~~k~~~ 394 (394)
T KOG0225|consen 364 LFTDVYVKGTGFEIRG-GRIDEEKWQFFKGVA 394 (394)
T ss_pred HHHHhhccCCCccccC-cccccccccccccCC
Confidence 9999999999998888 999999999999875
No 5
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2.3e-79 Score=616.45 Aligned_cols=329 Identities=69% Similarity=1.104 Sum_probs=316.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCH
Q 014288 73 EKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA 152 (427)
Q Consensus 73 ~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~ 152 (427)
+.+.+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCc
Q 014288 153 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 232 (427)
Q Consensus 153 ~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G 232 (427)
.++|+|++|+.+|+++|++|++|+++++.++.+.+++||+++|+|+|+|+|.|++++.++...++++|||++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999886443333478999999999999999
Q ss_pred cHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 014288 233 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 312 (427)
Q Consensus 233 ~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~ 312 (427)
.|||+||+|++|+||+||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+
T Consensus 173 ~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~ 252 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPT 252 (341)
T ss_pred HHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999987777788999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 014288 313 LVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 392 (427)
Q Consensus 313 lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 392 (427)
|||+.|||+.||+++|++.||+++|++.|+++|||.+|+++|+++|++|++++++++++++++|++++++|+++|.|+++
T Consensus 253 lIev~tyR~~gHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~ 332 (341)
T CHL00149 253 LIEALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNIS 332 (341)
T ss_pred EEEEEEecCCCcCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccC
Q 014288 393 QLLENVFAD 401 (427)
Q Consensus 393 ~~~~~vya~ 401 (427)
++|+|||++
T Consensus 333 ~~~~~vy~~ 341 (341)
T CHL00149 333 DLKKYLFAD 341 (341)
T ss_pred HHHhhcccC
Confidence 999999975
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=3.4e-77 Score=595.74 Aligned_cols=315 Identities=57% Similarity=0.973 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHHHHH
Q 014288 79 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSE 158 (427)
Q Consensus 79 ~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~~~e 158 (427)
+|+++++|++|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHH
Q 014288 159 LFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL 238 (427)
Q Consensus 159 l~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaL 238 (427)
++|+.+|.++|++|++|+.+++.++.+.+++||+++|+|+|+|+|.|++ +++++|||++|||++++|.|+|+|
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~-------~~~~~vv~~~GDGa~~~g~~~eal 153 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYR-------GNDNVTACFFGDGAANQGQFYESF 153 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHh-------CCCCEEEEEeCCCcccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 578999999999999999999999
Q ss_pred HHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 239 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 239 n~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
|+|..|++|+||||+||+|+++++...+...+++++++++||+++++|||+|+++|++++++|+++++++++|+|||+.|
T Consensus 154 n~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t 233 (315)
T TIGR03182 154 NMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT 233 (315)
T ss_pred HHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeC
Confidence 99999999999999999999999887777788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcc
Q 014288 319 YRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENV 398 (427)
Q Consensus 319 ~R~~gHs~~D~~~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~v 398 (427)
||+.||+++|++.||+++|++.|+++|||.+|+++|+++|+++++++++++++++++|++++++|++.|.|+++++|+||
T Consensus 234 ~R~~gHs~~D~~~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~v 313 (315)
T TIGR03182 234 YRFRGHSMSDPAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDV 313 (315)
T ss_pred CcCCCCCCCCccccCCHHHHHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 014288 399 FA 400 (427)
Q Consensus 399 ya 400 (427)
|+
T Consensus 314 y~ 315 (315)
T TIGR03182 314 YA 315 (315)
T ss_pred cC
Confidence 96
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.9e-72 Score=567.00 Aligned_cols=329 Identities=36% Similarity=0.578 Sum_probs=306.5
Q ss_pred cccccccccchhhhhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCE
Q 014288 58 VRRRLPVVAVSEVVKE---KKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDS 134 (427)
Q Consensus 58 ~~~~~~~~~~~~~~~~---~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~ 134 (427)
|.||+ ++..+.... .+.+++++++++|++|+++|.||+++.+++++|++ ||+|+++||||+++|++.+|+++||
T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~ 77 (341)
T TIGR03181 1 ELVQV--LDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDW 77 (341)
T ss_pred CceEE--ECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCE
Confidence 46777 555553332 24689999999999999999999999999999999 8999999999999999999999999
Q ss_pred EEcCCcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhc
Q 014288 135 VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA 214 (427)
Q Consensus 135 v~~~yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~ 214 (427)
++++||+|+++|++|+++.++|++++|+.+|.+ .+++.++.+.+++||.++|.|+|+|+|.|+.
T Consensus 78 ~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~------- 141 (341)
T TIGR03181 78 VFPSYRDHAAMLARGVPLVEILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLR------- 141 (341)
T ss_pred EEcchhhHHHHHHcCCCHHHHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhh-------
Confidence 999999999999999999999999999876531 2467899999999999999999999999887
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHH
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 294 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av 294 (427)
+++++|||++|||++++|.++|+||+|++|+|||||||+||+|+++++...+...+++++++++||+++++|||+|+.+|
T Consensus 142 ~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av 221 (341)
T TIGR03181 142 GEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAV 221 (341)
T ss_pred CCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHH
Confidence 58899999999999999999999999999999999999999999998876666778999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCC-CCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014288 295 REVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKID 373 (427)
Q Consensus 295 ~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~-~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~ 373 (427)
++++++|+++++++++|+|||++|||..||+++|++ .||+++|++.|+++|||.+|+++|++.|++|++++++++++++
T Consensus 222 ~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~ 301 (341)
T TIGR03181 222 YAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAE 301 (341)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCChhhhhhccccCCCCC
Q 014288 374 EVVEDAVEFADESAPPPRSQLLENVFADPKGF 405 (427)
Q Consensus 374 ~~v~~a~~~A~~~p~p~~~~~~~~vya~~~~~ 405 (427)
++|++++++|+++|.|+++++|+|||++.++.
T Consensus 302 ~~v~~a~~~a~~~p~P~~~~~~~~vy~~~~~~ 333 (341)
T TIGR03181 302 AEVAEAVAEALALPPPPVDDIFDHVYAELPPE 333 (341)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHhhcccCCCHH
Confidence 99999999999999999999999999987654
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=3.1e-69 Score=534.88 Aligned_cols=297 Identities=45% Similarity=0.741 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhcccCCCc
Q 014288 88 DMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC 167 (427)
Q Consensus 88 ~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~~~el~g~~~g~~ 167 (427)
+|+++|+||+.+...+.++++.|++|++.||||++++++.+|+++||++++||+|++.|++|+++.++|+|++|+..+..
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 45666667776667777777889999999999999999999999999999999999999999999999999999995554
Q ss_pred cCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC
Q 014288 168 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP 247 (427)
Q Consensus 168 ~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP 247 (427)
.|+. +.|+..+..++.+.++++|.++|+|+|+|+|.|++ +.+.+++|++|||++++|.|||+||+|+.|+||
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP 153 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYR-------GKDGVVVCFFGDGATSQGDFHEALNLAALWKLP 153 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHT-------TSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhc-------CCceeEEEEecCcccccCccHHHHHHHhhccCC
Confidence 4444 45566777789999999999999999999999977 578999999999999999999999999999999
Q ss_pred eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 248 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 248 vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
|||||+||+|+|||+...+++..+++++|++||+|+++|||+|+++|++++++|++++|+++||+|||++|||+.||+++
T Consensus 154 vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~ 233 (300)
T PF00676_consen 154 VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSES 233 (300)
T ss_dssp EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTT
T ss_pred eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 014288 328 DP-DELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 392 (427)
Q Consensus 328 D~-~~yR~~~e~~~~~-~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 392 (427)
|+ ..||+++|++.|. .+|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|++|
T Consensus 234 Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 234 DDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 95 5699899988765 45999999999999999999999999999999999999999999999986
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.3e-68 Score=529.35 Aligned_cols=292 Identities=51% Similarity=0.857 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhcccC
Q 014288 85 LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 164 (427)
Q Consensus 85 ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~~~el~g~~~ 164 (427)
+|++|+++|.||+++.+++++|++.|++|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHc
Q 014288 165 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 244 (427)
Q Consensus 165 g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~ 244 (427)
++++|++|++|+.+++.++.+.+++||+++|+|+|+|+|.|+. +++++|||++|||++++|.|+|+|++|+++
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~ 153 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALW 153 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887 578999999999999999999999999999
Q ss_pred CCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 014288 245 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 324 (427)
Q Consensus 245 ~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gH 324 (427)
+||+||||+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|+++++++++|+|||+.|||..||
T Consensus 154 ~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gH 233 (293)
T cd02000 154 KLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH 233 (293)
T ss_pred CCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCC
Confidence 99999999999999999887777778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 014288 325 SLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFA 383 (427)
Q Consensus 325 s~~D-~~~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A 383 (427)
|++| +..||+++|++.|..+|||.+|+++|++.|++|++++++++++++++|++++++|
T Consensus 234 s~~dd~~~Yr~~~e~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 234 STSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred CCCCCcccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9765 5589999999999999999999999999999999999999999999999998875
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=7.1e-69 Score=513.81 Aligned_cols=355 Identities=27% Similarity=0.424 Sum_probs=337.5
Q ss_pred CccceeeeccCCCCCCcccccccccchh-hhhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh
Q 014288 42 STRKLRVNSVHSNQGNVRRRLPVVAVSE-VVKEK--KLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ 118 (427)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~Gq 118 (427)
.+++|.|++++..+.+|+||| +|..+ ++.++ +.++++..++||+.|++...+|..+.+-++||+| .||.++.|+
T Consensus 47 ft~kl~fI~~~d~~~iPiYRV--~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GE 123 (432)
T KOG1182|consen 47 FTSKLEFIQPSDTPRIPIYRV--MDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGE 123 (432)
T ss_pred cccceeecCcccCCCCceEEE--ecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccch
Confidence 457999999999999999999 55544 66654 6889999999999999999999999999999999 699999999
Q ss_pred HHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHH
Q 014288 119 EAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 198 (427)
Q Consensus 119 Ea~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~Av 198 (427)
|++.+|.+++|.+.|.||++||.-|..|.+|.+++++|.+++|..++..+|+++++|+++.++++...+++|..++|.|+
T Consensus 124 Ea~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAv 203 (432)
T KOG1182|consen 124 EAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAV 203 (432)
T ss_pred hhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhccccc
Q 014288 199 GAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPA 278 (427)
Q Consensus 199 GaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a 278 (427)
|+|+|.|+++ +.+..+||++|||++++|++|.++|+|+.+..||||+|-||+|+|||++++|.....++-++.+
T Consensus 204 GaaYa~k~~~------~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~a 277 (432)
T KOG1182|consen 204 GAAYALKMRK------KNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPA 277 (432)
T ss_pred hhhhhhhhcc------cCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccc
Confidence 9999999875 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCC-CCCCHHHHHHHh-cCChHHHHHHHHHH
Q 014288 279 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-ELRDPAEKARYA-ARDPITALKKYLIE 356 (427)
Q Consensus 279 ~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~-~yR~~~e~~~~~-~~DPi~~~~~~L~~ 356 (427)
||+..++|||+|+.+||.|+++|.+.+....+|+|||+.|||...||++|+. .||+.+|++.|. .+.||.+|++|+..
T Consensus 278 YGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~ 357 (432)
T KOG1182|consen 278 YGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIES 357 (432)
T ss_pred cceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999875 799999999996 45799999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhccccCCCCC
Q 014288 357 SSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGF 405 (427)
Q Consensus 357 ~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vya~~~~~ 405 (427)
+|.|+++...++++++++.|-++++.|++-++|...++|++||.+++..
T Consensus 358 ~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~ 406 (432)
T KOG1182|consen 358 NGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKN 406 (432)
T ss_pred cCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHh
Confidence 9999999999999999999999999999999999999999999988764
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=3e-57 Score=498.55 Aligned_cols=312 Identities=20% Similarity=0.270 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHh------cCCCCEEEc-CCcchHHHHh-
Q 014288 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKL------LKKEDSVVS-TYRDHVHALS- 147 (427)
Q Consensus 76 ~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~------L~~~D~v~~-~yR~~~~~La- 147 (427)
.+++++++++|+.|+++|.||+++.++|.++|++| +.|||++++|+..+ ++++|+|++ +||+|+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~----~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~ 260 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFS----LEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVN 260 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHH
Confidence 78999999999999999999999999999999985 59999999999994 458999999 7999999999
Q ss_pred -cCCCHHHHHHHHhccc-------CCCcc----------CCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhh
Q 014288 148 -KGVPARAVMSELFGKA-------TGCCR----------GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRRE 209 (427)
Q Consensus 148 -~g~~~~~~~~el~g~~-------~g~~~----------G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~ 209 (427)
+|++++++|+|++|+. +|+++ |++|++|+... ...+++|.+.|+|+|+|+|.|+++.
T Consensus 261 v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~-----~npShleav~Pva~G~A~A~q~~~~ 335 (924)
T PRK09404 261 VLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLA-----FNPSHLEIVNPVVEGSVRARQDRRG 335 (924)
T ss_pred hcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeecc-----CCccccccccCeehhHHHHHHHhcC
Confidence 5999999999999997 33333 44455555432 2458999999999999999998741
Q ss_pred hhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCC---eEEEEEcCCccccccccccccCchhhcccccCCCcEEE
Q 014288 210 VLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFH 285 (427)
Q Consensus 210 ~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~ 285 (427)
-. ......++||++|||++ ++|.|+|+||+|..|++| +||||+||+|+++|+...+++..+++++|++||+|+++
T Consensus 336 ~~-~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~ 414 (924)
T PRK09404 336 DG-QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFH 414 (924)
T ss_pred Cc-ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEE
Confidence 00 01122789999999998 799999999999999998 99999999999999988888888899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHH
Q 014288 286 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDPITALKKYLIESSLASEAE 364 (427)
Q Consensus 286 Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DPi~~~~~~L~~~g~~t~ee 364 (427)
|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|++.||++.|++.|++ +||+.+|+++|++.|++|+++
T Consensus 415 VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e 494 (924)
T PRK09404 415 VNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEE 494 (924)
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999985 699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccc
Q 014288 365 LKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFA 400 (427)
Q Consensus 365 ~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vya 400 (427)
+++++++++++|++++++|++. .+.+.++.+|.
T Consensus 495 ~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~ 527 (924)
T PRK09404 495 ADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS 527 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---Ccccccccccc
Confidence 9999999999999999999875 35566666765
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=4.9e-51 Score=447.70 Aligned_cols=311 Identities=19% Similarity=0.241 Sum_probs=278.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC------CCCEEEcC-CcchHHHHh
Q 014288 75 KLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KEDSVVST-YRDHVHALS 147 (427)
Q Consensus 75 ~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~------~~D~v~~~-yR~~~~~La 147 (427)
..+++++.+++++.|+.+..||+++...|...|+||. .|.|++.+++..+++ -+|+|++. ||||++.|+
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSL----EGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeec----ccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 5789999999999999999999999999999999986 999999999988886 37999996 999999999
Q ss_pred --cCCCHHHHHHHHhcccCCC-ccCCCCC-Ccccc-----------ccCcccCCccCCCcchHHHHHHHHHHHHHhhhhh
Q 014288 148 --KGVPARAVMSELFGKATGC-CRGQGGS-MHMFS-----------KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLK 212 (427)
Q Consensus 148 --~g~~~~~~~~el~g~~~g~-~~G~ggs-~H~~~-----------~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~ 212 (427)
+|++++++|+|+.|+..+. +.|+|+. +|++. ....+.++.++|+.+.|+|+|+|+|.|+++...
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~- 338 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDS- 338 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCc-
Confidence 9999999999999987653 3466665 88884 335567889999999999999999999874200
Q ss_pred hcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCe---EEEEEcCCccccccccccccCchhhcccccCCCcEEEEeC
Q 014288 213 EADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 288 (427)
Q Consensus 213 ~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPv---i~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 288 (427)
..+.+.++||++|||++ ++|.|+|+||+|..|++|+ ||||+||+|+++|+...+++..+++++|++||+|+++|||
T Consensus 339 ~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG 418 (929)
T TIGR00239 339 PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNA 418 (929)
T ss_pred ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECC
Confidence 11236789999999996 8999999999999999997 9999999999999887787788899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCC-CCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHH
Q 014288 289 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE-LRDPAEKARYAA-RDPITALKKYLIESSLASEAELK 366 (427)
Q Consensus 289 ~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~-yR~~~e~~~~~~-~DPi~~~~~~L~~~g~~t~ee~~ 366 (427)
+|+++|+++++.|++++|+++||+|||++|||.+||+++|++. ||+ .|++.|++ +||+.+|+++|++.|++|+++++
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~ 497 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVT 497 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999987 665 78888874 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCh
Q 014288 367 AIEKKIDEVVEDAVEFADESAPPPR 391 (427)
Q Consensus 367 ~i~~e~~~~v~~a~~~A~~~p~p~~ 391 (427)
+++++++++|+++++.+...+.|..
T Consensus 498 ~i~~~~~~~v~~a~~~~~~~~~~~~ 522 (929)
T TIGR00239 498 EMVNLYRDALEAADCVVPSWREMNT 522 (929)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccc
Confidence 9999999999999999987654443
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=1e-48 Score=378.46 Aligned_cols=237 Identities=22% Similarity=0.309 Sum_probs=214.9
Q ss_pred HHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEcC-CcchHHHHh--cCCCHHHHHHHHhcccC-
Q 014288 95 FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVST-YRDHVHALS--KGVPARAVMSELFGKAT- 164 (427)
Q Consensus 95 ~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~------~D~v~~~-yR~~~~~La--~g~~~~~~~~el~g~~~- 164 (427)
||+++.+.|...|+++ +.|+|++++++..+|++ +|++++. ||+|++.|+ +|++++++|.|++|+.+
T Consensus 1 ~e~f~~~~f~~~krfs----~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRFG----LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEEE----ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 6889999999999875 59999999999999998 7999997 999999999 99999999999999877
Q ss_pred --CCccCCCCCCcccccc-----------CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-c
Q 014288 165 --GCCRGQGGSMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-N 230 (427)
Q Consensus 165 --g~~~G~ggs~H~~~~~-----------~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~ 230 (427)
+...++..++|++... ..+.++.+++|.++|+|+|+|+|.|+++.. ....+.++||++|||++ +
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~--~~~~~~v~v~~~GDgA~~~ 154 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGD--GERDKVLPILIHGDAAFAG 154 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCC--ccCCCeEEEEEecCccccC
Confidence 4345666789997654 456788999999999999999999988410 01246899999999995 7
Q ss_pred CccHHHHHHHHHHcCCC---eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc
Q 014288 231 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 307 (427)
Q Consensus 231 ~G~~~EaLn~A~~~~LP---vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~ 307 (427)
||.|+|+||+|..|++| +||||+||+|+++|+...+++..+++++|++||+|+++|||+|+++|++++++|++++|+
T Consensus 155 qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~ 234 (265)
T cd02016 155 QGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQK 234 (265)
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999998888889999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEEecCCCCCCCCCCCCCCHHH
Q 014288 308 GEGPTLVECETYRFRGHSLADPDELRDPAE 337 (427)
Q Consensus 308 ~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e 337 (427)
++||+|||++|||++||+++|++.|++|..
T Consensus 235 g~gp~lIe~~tYR~~GHse~D~p~~t~p~m 264 (265)
T cd02016 235 FKKDVVIDLVCYRRHGHNELDEPSFTQPLM 264 (265)
T ss_pred cCCCEEEEEEEecCCCCCCcCCccccCCCc
Confidence 999999999999999999999999998754
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.9e-35 Score=316.35 Aligned_cols=307 Identities=20% Similarity=0.256 Sum_probs=266.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEc-CCcchHHHH
Q 014288 74 KKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVS-TYRDHVHAL 146 (427)
Q Consensus 74 ~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~------~D~v~~-~yR~~~~~L 146 (427)
..++++++.+.+++++.-+..||.++...|...|+|+. .|-|.+.+.+..+|.. +.++++ .||++.+.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFsl----EG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSL----EGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeee----cchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 46889999999999999999999999999999999876 9999999988888863 456666 899999999
Q ss_pred h--cCCCHHHHHHHHhcccCCCcc-CCCC-CCcccccc-----------CcccCCccCCCcchHHHHHHHHHHHHHhhhh
Q 014288 147 S--KGVPARAVMSELFGKATGCCR-GQGG-SMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVL 211 (427)
Q Consensus 147 a--~g~~~~~~~~el~g~~~g~~~-G~gg-s~H~~~~~-----------~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~ 211 (427)
+ .|.+..++|.|+-|+...... |.|. .+|++... ..+..+.++|...-|+.-|+..|.+..-..
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~- 641 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDK- 641 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhcc-
Confidence 8 699999999999998754432 3322 47776431 223567899999999999999997754321
Q ss_pred hhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCC---eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe
Q 014288 212 KEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 287 (427)
Q Consensus 212 ~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd 287 (427)
...+-....|+++||++| +||++.|.||+|..|++| +||||.||+|+++|.....+++.+..++++++++|+++||
T Consensus 642 g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVN 721 (1228)
T PRK12270 642 GEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVN 721 (1228)
T ss_pred cccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeEC
Confidence 111234568999999995 799999999999999999 9999999999999999888888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCCh-HHHHHHHHHHcCCCCHHHHH
Q 014288 288 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP-ITALKKYLIESSLASEAELK 366 (427)
Q Consensus 288 g~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~DP-i~~~~~~L~~~g~~t~ee~~ 366 (427)
|+||++|+++++.|+++++++++|++||++|||.+||++.|++.+++|..++.+..+.. -+.|.+.|+.+|.+|+||.+
T Consensus 722 GdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e 801 (1228)
T PRK12270 722 GDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAE 801 (1228)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999888876665 45899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 014288 367 AIEKKIDEVVEDAVEFADE 385 (427)
Q Consensus 367 ~i~~e~~~~v~~a~~~A~~ 385 (427)
++.++++.++++++...++
T Consensus 802 ~~l~dy~~~Le~~f~e~re 820 (1228)
T PRK12270 802 QALRDYQGQLERVFNEVRE 820 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887764
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.7e-33 Score=298.41 Aligned_cols=227 Identities=22% Similarity=0.225 Sum_probs=187.0
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEE--cCCcchHHHHhc
Q 014288 72 KEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVV--STYRDHVHALSK 148 (427)
Q Consensus 72 ~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~--~~yR~~~~~La~ 148 (427)
.+.+.++.++|.++-.. +|.+ .++..++..|++|++.|+-.+.+++...++ |.|+++ +.||+|+|.|++
T Consensus 10 ~d~~~l~~~~l~~l~~~---ir~~-----~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 10 ADLKKLSLDELEQLASE---IRTA-----LLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred HHHhhCCHHHHHHHHHH---HHHH-----HHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 34456787777776655 5544 445567888999999999554444444333 799999 899999999999
Q ss_pred CCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc
Q 014288 149 GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 228 (427)
Q Consensus 149 g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa 228 (427)
|.++..++.+++|+.+|++++.+ +.|.+ ...|+.|.++++|+|+|+|.|++ +.+.+|||++|||+
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~-------~~~~~vv~~iGDG~ 146 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLK-------GEKGNIIAVIGDGS 146 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhc-------CCCCeEEEEECchh
Confidence 99999999999999999988776 33432 24578889999999999999887 46789999999999
Q ss_pred ccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccc---------cccCchhhcccccCCCcEEEE-eCCCHHHHHHHH
Q 014288 229 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR---------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVA 298 (427)
Q Consensus 229 ~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~---------~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~ 298 (427)
+++|.+||+||+|+.|++|+|+||+||+|+++++... +....++..++++|||+++.| ||+|+.++++++
T Consensus 147 ~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~ 226 (581)
T PRK12315 147 LSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAF 226 (581)
T ss_pred hhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHH
Confidence 9999999999999999999999999999999977642 222345667899999999998 999999999877
Q ss_pred HHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 299 KEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 299 ~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
++| ++++||++|+++|+|++|..
T Consensus 227 ~~a----~~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 227 KEV----KDIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHH----HhCCCCEEEEEEeecCCCCC
Confidence 654 56789999999999999965
No 16
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.2e-31 Score=272.88 Aligned_cols=316 Identities=21% Similarity=0.290 Sum_probs=270.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEc-CCcchHHHHhc
Q 014288 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVS-TYRDHVHALSK 148 (427)
Q Consensus 76 ~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~------~D~v~~-~yR~~~~~La~ 148 (427)
.++.|+.+-+|.++.++-.||+++...+..-|+||. .|+|.+..|+..+++. +++|++ .|||+.+.|+.
T Consensus 245 q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFGL----EGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~N 320 (1017)
T KOG0450|consen 245 QYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGL----EGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLAN 320 (1017)
T ss_pred ccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccccc----cchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHH
Confidence 679999999999999999999999999999999997 9999999999999875 677877 89999999983
Q ss_pred --CCCHHHHHHHHhcccCCCccCCCC-CCccccc---c---------CcccCCccCCCcchHHHHHHHHHHHHHhhhhhh
Q 014288 149 --GVPARAVMSELFGKATGCCRGQGG-SMHMFSK---E---------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE 213 (427)
Q Consensus 149 --g~~~~~~~~el~g~~~g~~~G~gg-s~H~~~~---~---------~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~ 213 (427)
-.+++++|.|+.|..+.+. |.|. .+|++-. . +.+..+.++|...-|+.+|...|.++... ..
T Consensus 321 VvRKpl~qIfseF~g~~~~De-GSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~--D~ 397 (1017)
T KOG0450|consen 321 VVRKPLEQIFSEFSGLEAADE-GSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTG--DE 397 (1017)
T ss_pred HHhhHHHHHHHhccCCCCCcC-CCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcc--cc
Confidence 4699999999999554332 3222 4666521 1 12346789999999999999999987641 11
Q ss_pred cCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCC---eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCC
Q 014288 214 ADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 289 (427)
Q Consensus 214 ~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 289 (427)
.+.+...|.++||++| .||+++|.+.+...-+.- .|+||.||+++++|.+...+++++..++|++.+.|.++|+++
T Consensus 398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaD 477 (1017)
T KOG0450|consen 398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNAD 477 (1017)
T ss_pred ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCC
Confidence 2445678999999996 699999999987655554 899999999999999988889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCCh-HHHHHHHHHHcCCCCHHHHHHH
Q 014288 290 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP-ITALKKYLIESSLASEAELKAI 368 (427)
Q Consensus 290 D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~DP-i~~~~~~L~~~g~~t~ee~~~i 368 (427)
||++|.-+++-|.++...+++.++|+++|||..||++.|.+.+++|.+++.++++.| +..|.+.|+++|.++.+++++.
T Consensus 478 D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~ 557 (1017)
T KOG0450|consen 478 DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEE 557 (1017)
T ss_pred ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhhhhhcc
Q 014288 369 EKKIDEVVEDAVEFADESAPPPRSQLLENV 398 (427)
Q Consensus 369 ~~e~~~~v~~a~~~A~~~p~p~~~~~~~~v 398 (427)
.+.+...+++|++.++....--..+.++.-
T Consensus 558 ~~k~~~I~eeafe~sKd~~~~~~rdWL~sp 587 (1017)
T KOG0450|consen 558 IKKYDNILEEAFERSKDYKPLHIRDWLDSP 587 (1017)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhhhcCC
Confidence 999999999999999875332324555443
No 17
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.2e-29 Score=255.19 Aligned_cols=310 Identities=21% Similarity=0.298 Sum_probs=259.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEc-CCcchHHHHh-
Q 014288 76 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVS-TYRDHVHALS- 147 (427)
Q Consensus 76 ~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~------~D~v~~-~yR~~~~~La- 147 (427)
.+.++++.++-+.|+.+..||.++...|.+-|+.| +.|.|.+.+=+..+|+- +|+|++ .||++.+.|.
T Consensus 153 ~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 153 QLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 67899999999999999999999999999999887 49999997766777752 788877 8999999886
Q ss_pred -cCCCHHHHHHHHhcccCCCc----cCCCCCCccccc--------c--CcccCCccCCCcchHHHHHHHHHHHHHhhhhh
Q 014288 148 -KGVPARAVMSELFGKATGCC----RGQGGSMHMFSK--------E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLK 212 (427)
Q Consensus 148 -~g~~~~~~~~el~g~~~g~~----~G~ggs~H~~~~--------~--~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~ 212 (427)
..++|..||+.+.|...-+. .|+.- .|+.+. . ..+.++.+++....|+|+|.+.+.+.......
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVl-SHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gd 307 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVL-SHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGD 307 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHH-HHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCC
Confidence 78999999999999865432 23322 232211 1 12457789999999999999999776542211
Q ss_pred --h---cCC-C-ceEEEEeCCCcc-cCccHHHHHHHHHHcCCC---eEEEEEcCCccccccccccccCchhhcccccCCC
Q 014288 213 --E---ADC-D-HVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGM 281 (427)
Q Consensus 213 --~---~~~-~-~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~ 281 (427)
. ... | -..|.+.|||++ .+|+++|+++++-.-..- .|++|.||+.+++++....+++....++++++++
T Consensus 308 yspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~ 387 (913)
T KOG0451|consen 308 YSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQA 387 (913)
T ss_pred CCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCC
Confidence 0 011 2 235677899996 699999999998644433 6999999999999999988888999999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHH-HHHHHHHHcCCC
Q 014288 282 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPIT-ALKKYLIESSLA 360 (427)
Q Consensus 282 ~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPi~-~~~~~L~~~g~~ 360 (427)
++++|+|+||++|.++.+-|+++.|++++.++|++.|||.+||++.|++.|++|.+++...+|..++ .|.+.|++.|++
T Consensus 388 pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~ 467 (913)
T KOG0451|consen 388 PVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVL 467 (913)
T ss_pred CEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998776 679999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 014288 361 SEAELKAIEKKIDEVVEDAVEFADESAPPP 390 (427)
Q Consensus 361 t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~ 390 (427)
|+++++++..+..+.+.+.++.+...-+|+
T Consensus 468 tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 468 TEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 999999999999999999999888764444
No 18
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.96 E-value=2.4e-28 Score=263.49 Aligned_cols=305 Identities=20% Similarity=0.238 Sum_probs=264.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEc-CCcchHHHH
Q 014288 74 KKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVS-TYRDHVHAL 146 (427)
Q Consensus 74 ~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~------~D~v~~-~yR~~~~~L 146 (427)
.+.+++|+.+.+|+++..+..||+++...|...|+||. .|.|++.+++..+++. +++|++ .|||+.+.|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSL----EGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccc----cchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 45789999999999999999999999999999999987 9999999999888863 688887 899999999
Q ss_pred h--cCCCHHHHHHHHhcccCCCc-cCCCCCCccccc----------cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhh
Q 014288 147 S--KGVPARAVMSELFGKATGCC-RGQGGSMHMFSK----------EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE 213 (427)
Q Consensus 147 a--~g~~~~~~~~el~g~~~g~~-~G~ggs~H~~~~----------~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~ 213 (427)
. .|.+++.+|.|+.|+..... .|+. .+|++.. .+.+..+.++|....|+..|.+.|.+.... ..
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDV-KYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~--d~ 321 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDV-KYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLG--DT 321 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCccccc-ccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhc--cC
Confidence 8 79999999999999653322 3332 4666532 122356789999999999999999775531 01
Q ss_pred cCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCC---eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCC
Q 014288 214 ADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 289 (427)
Q Consensus 214 ~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 289 (427)
.......+.++||.++ ++|.+.|.||+....+.. .++||.||+++++|.+...++.++..++|+.+++|+++|+|.
T Consensus 322 ~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~D 401 (906)
T COG0567 322 ERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNAD 401 (906)
T ss_pred ccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccC
Confidence 1123456899999996 699999999999888776 899999999999999888888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCC-hHHHHHHHHHHcCCCCHHHHHHH
Q 014288 290 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARD-PITALKKYLIESSLASEAELKAI 368 (427)
Q Consensus 290 D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~D-Pi~~~~~~L~~~g~~t~ee~~~i 368 (427)
||+++..+.+.|++++..++++++|++.|||.+||++.|.+.++++..++.++++. +...|.+.|+++|++++++.+.+
T Consensus 402 DPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~ 481 (906)
T COG0567 402 DPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADEL 481 (906)
T ss_pred CchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998775 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 014288 369 EKKIDEVVEDAVEFADE 385 (427)
Q Consensus 369 ~~e~~~~v~~a~~~A~~ 385 (427)
.++++..++........
T Consensus 482 ~~~~r~~L~~~~~~~~~ 498 (906)
T COG0567 482 VNDYRDALDQGFEVVKE 498 (906)
T ss_pred HHHHHHHhhhhhhHHhH
Confidence 99999999887766554
No 19
>PRK12754 transketolase; Reviewed
Probab=99.94 E-value=4.4e-25 Score=238.93 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=125.9
Q ss_pred CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcC---CCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCC
Q 014288 181 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 256 (427)
Q Consensus 181 ~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~---~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~ 256 (427)
.++...+|++|+|++.|+|+|+|.|+++.+++..+ .+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus 107 pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~ 186 (663)
T PRK12754 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (663)
T ss_pred CCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 46777899999999999999999999876665444 37899999999999999999999999999999 789999999
Q ss_pred ccccccccccccCchhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 257 y~is~~~~~~~~~~d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
|++++++.... ..++.+++++|||++++ |||+|++++.+|+++|.+ ..++|++|+++|++++|.+..
T Consensus 187 ~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred CccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcccc
Confidence 99999987765 57899999999999999 899999999886665532 257899999999999998854
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.93 E-value=2.1e-24 Score=234.47 Aligned_cols=143 Identities=25% Similarity=0.335 Sum_probs=124.3
Q ss_pred CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhc---CCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCC
Q 014288 181 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 256 (427)
Q Consensus 181 ~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~---~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~ 256 (427)
.++...+|++|++++.|+|+|+|.|+++..++.. ..+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4667789999999999999999999886544422 247889999999999999999999999999999 888999999
Q ss_pred ccccccccccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEecCCCCCCCC
Q 014288 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD 328 (427)
Q Consensus 257 y~is~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~R~~gHs~~D 328 (427)
|+++++...+. ..++.+++++|||+++.| ||+|+.++.+++++ +++. ++|++|+++|+|++|.+..+
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~----a~~~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEE----AKASKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHH----HHhCCCCCEEEEEEeeecccCcccC
Confidence 99999987765 578999999999999999 99999998875554 4555 48999999999999987544
No 21
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1e-23 Score=220.76 Aligned_cols=298 Identities=19% Similarity=0.228 Sum_probs=194.4
Q ss_pred CCChH-HHHHHHHHhcC--C-------CCE-EEcCCcchHHHHh--------cCCCHHHH--HHHHhcccCCCccCCCCC
Q 014288 115 YNGQE-AVSTGFIKLLK--K-------EDS-VVSTYRDHVHALS--------KGVPARAV--MSELFGKATGCCRGQGGS 173 (427)
Q Consensus 115 ~~GqE-a~~vg~~~~L~--~-------~D~-v~~~yR~~~~~La--------~g~~~~~~--~~el~g~~~g~~~G~ggs 173 (427)
..|.- .+.+.....|+ | .|. |++. +|+.+|. ..++++++ |+|+-++++|+.-
T Consensus 32 pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSa--GHgSmllYsllhl~Gy~ls~edLk~FRQ~~SkTpGHPE----- 104 (663)
T COG0021 32 PMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSA--GHGSMLLYSLLHLTGYDLSLEDLKNFRQLGSKTPGHPE----- 104 (663)
T ss_pred CccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecC--CchhHHHHHHHHHccCCCCHHHHHhhccCCCCCCCCCC-----
Confidence 45542 33344455564 2 464 4454 5665543 23677777 5677777766431
Q ss_pred CccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcC---CCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eE
Q 014288 174 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IV 249 (427)
Q Consensus 174 ~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~---~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi 249 (427)
+....++...+|+||+|++.|+|+|+|.++....+++++ -|+.++|++|||++++|+.+|+..+|+.++|. +|
T Consensus 105 ---~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLI 181 (663)
T COG0021 105 ---YGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLI 181 (663)
T ss_pred ---cCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEE
Confidence 122346677889999999999999999999998887543 36789999999999999999999999999999 88
Q ss_pred EEEEcCCccccccccccccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCC-
Q 014288 250 FVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL- 326 (427)
Q Consensus 250 ~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t~R~~gHs~- 326 (427)
++.++|.++|...+.... +.|..+++++|||.++ .+||+|++++..|+++| ++ .++|++|+|+|..++|-+.
T Consensus 182 vlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~A----k~~~dkPtlI~~kTiIG~Gsp~k 256 (663)
T COG0021 182 VLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEA----KASTDKPTLIIVKTIIGKGSPNK 256 (663)
T ss_pred EEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH----HhcCCCCeEEEEEeeeecCCCCc
Confidence 888999999988766554 6799999999999999 78999999988866655 44 6799999999999999776
Q ss_pred CCCCCC----CCHHHHHHHhc---C--Ch----HHHHHH--HHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHhhhCCC
Q 014288 327 ADPDEL----RDPAEKARYAA---R--DP----ITALKK--YLIESSLASEAELKAIEKKIDEV---VEDAVEFADESAP 388 (427)
Q Consensus 327 ~D~~~y----R~~~e~~~~~~---~--DP----i~~~~~--~L~~~g~~t~ee~~~i~~e~~~~---v~~a~~~A~~~p~ 388 (427)
.+...+ =..+|++..++ . +| -..+.. ...++|.-.+++|++.-+.+++. ..+.++.......
T Consensus 257 egt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~ 336 (663)
T COG0021 257 EGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGEL 336 (663)
T ss_pred CCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccC
Confidence 333222 23445543221 1 22 222222 22223322344444333333321 2222233333333
Q ss_pred CChhhhhhccccC-CC-CCCCCCCCc----ccccCCCcccccCCC
Q 014288 389 PPRSQLLENVFAD-PK-GFGIGPDGR----YRCEDPKFTEGTAHV 427 (427)
Q Consensus 389 p~~~~~~~~vya~-~~-~~~~~~~~~----~~~~~~~~~~~~~~~ 427 (427)
|.--+.+-..|.. +. -.++..+|. +....|.+++|+|||
T Consensus 337 p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADL 381 (663)
T COG0021 337 PANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADL 381 (663)
T ss_pred chhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCccc
Confidence 3211111112222 12 235555665 899999999999996
No 22
>PRK12753 transketolase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=228.68 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=124.7
Q ss_pred CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcC---CCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCC
Q 014288 181 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 256 (427)
Q Consensus 181 ~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~---~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~ 256 (427)
.++...+|++|++++.|+|+|+|.|+++..++..+ .+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus 107 pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~ 186 (663)
T PRK12753 107 PGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNG 186 (663)
T ss_pred CCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 46677899999999999999999998864433211 26899999999999999999999999999998 899999999
Q ss_pred ccccccccccccCchhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCC
Q 014288 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 328 (427)
Q Consensus 257 y~is~~~~~~~~~~d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 328 (427)
|+++++..... ..++.+++++|||+++. |||+|+.++++++++|.+ ..++|++|+++|++++|++..+
T Consensus 187 ~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e 255 (663)
T PRK12753 187 ISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKA 255 (663)
T ss_pred CcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCccc
Confidence 99999887654 57899999999999995 999999999998877653 3578999999999999998653
No 23
>PTZ00089 transketolase; Provisional
Probab=99.92 E-value=3.1e-23 Score=225.70 Aligned_cols=222 Identities=19% Similarity=0.168 Sum_probs=160.5
Q ss_pred ccccCCCChHHHHHHHH-HhcC--C-------CCEE-Ec-CCcc---hHHHHhcCC--CHHHHHHHHhcccCCCccCCCC
Q 014288 110 GFVHLYNGQEAVSTGFI-KLLK--K-------EDSV-VS-TYRD---HVHALSKGV--PARAVMSELFGKATGCCRGQGG 172 (427)
Q Consensus 110 G~~~~~~GqEa~~vg~~-~~L~--~-------~D~v-~~-~yR~---~~~~La~g~--~~~~~~~el~g~~~g~~~G~gg 172 (427)
|+...+.|.--+.+++- .+|+ + .|.+ ++ .|.. +++....|. +.+++ ..+. +..+..
T Consensus 27 GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l-~~fr-~~~s~~----- 99 (661)
T PTZ00089 27 GHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDLSMEDL-KNFR-QLGSRT----- 99 (661)
T ss_pred CCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCHHHH-HhcC-CCCCCC-----
Confidence 66666777766666665 3654 3 4764 44 4555 333444664 44443 3322 221111
Q ss_pred CCcccc-ccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhc---CCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-
Q 014288 173 SMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP- 247 (427)
Q Consensus 173 s~H~~~-~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~---~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP- 247 (427)
+.|.-. ...++...+|++|++++.|+|+|+|.|+++.+++.. ..+.+|||++|||++++|.+||++|+|+.++||
T Consensus 100 ~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~n 179 (661)
T PTZ00089 100 PGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEK 179 (661)
T ss_pred CCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCC
Confidence 122211 123455678999999999999999999886544322 126789999999999999999999999999998
Q ss_pred eEEEEEcCCccccccccccccCchhhcccccCCCcEEEE-eCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 248 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 248 vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
+|+||+||+|+|+.+...+ ...++.+++++|||+++.| ||+ |+.++++++++|.+. .++|++|+++|+|++||.
T Consensus 180 Li~i~d~N~~~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~ 255 (661)
T PTZ00089 180 LIVLYDDNKITIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSS 255 (661)
T ss_pred EEEEEECCCcccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCC
Confidence 8999999999999988654 3578899999999999999 999 999999988766432 268999999999999986
Q ss_pred CCCCCC----CCCHHHHHHHh
Q 014288 326 LADPDE----LRDPAEKARYA 342 (427)
Q Consensus 326 ~~D~~~----yR~~~e~~~~~ 342 (427)
+.++.. +.+.+|++.+.
T Consensus 256 ~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 256 KAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred cCCCCCccCCCCCHHHHHHHH
Confidence 665532 45677776654
No 24
>PLN02790 transketolase
Probab=99.91 E-value=2.8e-23 Score=225.73 Aligned_cols=207 Identities=21% Similarity=0.216 Sum_probs=148.8
Q ss_pred ccccCCCChHHHHHHHH-HhcC---------CCCEEEc--CCcc---hHHHHhcCC---CHHHHHHHHhcccCCCccCCC
Q 014288 110 GFVHLYNGQEAVSTGFI-KLLK---------KEDSVVS--TYRD---HVHALSKGV---PARAVMSELFGKATGCCRGQG 171 (427)
Q Consensus 110 G~~~~~~GqEa~~vg~~-~~L~---------~~D~v~~--~yR~---~~~~La~g~---~~~~~~~el~g~~~g~~~G~g 171 (427)
|+...+.|.--+.+++- ..|+ +.|.++- .|.. .++....|. +.+++ ..+. +..+..
T Consensus 15 GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l-~~~r-~~~s~~---- 88 (654)
T PLN02790 15 GHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDL-KQFR-QWGSRT---- 88 (654)
T ss_pred CcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHH-HHhc-cCCCCC----
Confidence 66656666655545553 4443 3576554 3554 333444665 55543 3322 111111
Q ss_pred CCCcccc-ccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcC---CCceEEEEeCCCcccCccHHHHHHHHHHcCCC
Q 014288 172 GSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP 247 (427)
Q Consensus 172 gs~H~~~-~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~---~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP 247 (427)
+.|.-. ...++...+|++|++++.|+|+|+|.|+++..++..+ .+.+|+|++|||++++|.+||++|+|+.|+||
T Consensus 89 -~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~ 167 (654)
T PLN02790 89 -PGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLG 167 (654)
T ss_pred -CCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCC
Confidence 122211 1236677899999999999999999997653322111 26889999999999999999999999999998
Q ss_pred -eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 014288 248 -IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG--MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 324 (427)
Q Consensus 248 -vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg--~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gH 324 (427)
+|+||+||+|+|+++...+. ..++.+++++|||+++.||| +|+.+++++++.|.+ ..++|++|+++|++++|.
T Consensus 168 nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~---~~~~P~lI~~~T~kG~G~ 243 (654)
T PLN02790 168 KLIVLYDDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKA---VTDKPTLIKVTTTIGYGS 243 (654)
T ss_pred CEEEEEecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCeEEEEEEEeecCCC
Confidence 89999999999999887544 56788999999999999988 899998886665532 167999999999999998
Q ss_pred CCC
Q 014288 325 SLA 327 (427)
Q Consensus 325 s~~ 327 (427)
+..
T Consensus 244 ~~~ 246 (654)
T PLN02790 244 PNK 246 (654)
T ss_pred ccc
Confidence 754
No 25
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.90 E-value=3.6e-22 Score=194.12 Aligned_cols=137 Identities=26% Similarity=0.360 Sum_probs=121.1
Q ss_pred cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccc
Q 014288 182 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 260 (427)
Q Consensus 182 ~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is 260 (427)
++...+|+||+++|.|+|+|+|.++. ++++.|||++|||++++|.++|+|++|++++|| +++|++||+|+++
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~-------~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~ 171 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID 171 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHh-------CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence 55567799999999999999998876 578999999999999999999999999999998 8889999999998
Q ss_pred ccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCC
Q 014288 261 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 328 (427)
Q Consensus 261 ~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 328 (427)
..........++.+++++|||+++.|||+|+.++.+++++|.+. .++|++|+++|.++.|++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCccC
Confidence 77655556788999999999999999999999998877766531 278999999999999998654
No 26
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.90 E-value=1.7e-22 Score=188.94 Aligned_cols=124 Identities=24% Similarity=0.289 Sum_probs=108.7
Q ss_pred ccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccc
Q 014288 183 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 262 (427)
Q Consensus 183 ~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~ 262 (427)
+...+|++|+++|+|+|+|+|.|++ +.+++|||++|||++++|.+||+|++|+.+++|+++||+||+|+++++
T Consensus 70 ~~~~~G~lG~gl~~A~G~Ala~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~ 142 (195)
T cd02007 70 DAFGTGHSSTSISAALGMAVARDLK-------GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN 142 (195)
T ss_pred ceECCCchhhhHHHHHHHHHHHHHh-------CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC
Confidence 3457899999999999999999877 467899999999999999999999999999999999999999998876
Q ss_pred ccccccCchhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 014288 263 HLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323 (427)
Q Consensus 263 ~~~~~~~~d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 323 (427)
.. +..++++++||.... |||+|++++.+++++| ++.++|++|+++|++++|
T Consensus 143 ~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a----~~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 143 VG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEV----KDLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHH----HhCCCCEEEEEEEecccC
Confidence 54 466778889999885 9999999998866554 556899999999999876
No 27
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.89 E-value=1.4e-21 Score=214.69 Aligned_cols=261 Identities=18% Similarity=0.146 Sum_probs=193.0
Q ss_pred ccccccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------
Q 014288 59 RRRLPVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------ 131 (427)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~Gq-Ea~~vg~~~~L~~------ 131 (427)
...|+|+|++++-.+++.+...++.+-....++...++.........+++.|+..++.+. +...+.....|+.
T Consensus 51 ~~~t~y~nti~~~~~~~~pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~ 130 (889)
T TIGR03186 51 AGATPYVNTIAVDQEPPYPGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASG 130 (889)
T ss_pred CCCCCCccCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCC
Confidence 455899999999999888888888888888888887776655544456777877666444 4445666677874
Q ss_pred CCEEEcCCcchHHHH------hcCC-CHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHH
Q 014288 132 EDSVVSTYRDHVHAL------SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTS 204 (427)
Q Consensus 132 ~D~v~~~yR~~~~~L------a~g~-~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~ 204 (427)
.|+|++. +|+..+ ..|. +.++ +..+.....+ .|-.+..|....+-.+...+|+||.|++.|+|+|++.
T Consensus 131 rD~Vlsk--GHasp~lYA~l~l~G~l~~e~-L~~fRq~~~~--~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~ 205 (889)
T TIGR03186 131 GDLVYFQ--PHSAPGVYARAFLEGFLSDAQ-LAHYRQEIAG--PGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFM 205 (889)
T ss_pred CCEEEEC--CchHHHHHHHHHHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHH
Confidence 6887775 455432 2564 5444 4444332111 1223333433322235557899999999999999999
Q ss_pred HHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccccccccccc-CchhhcccccCCCc
Q 014288 205 KYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMP 282 (427)
Q Consensus 205 k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~G~~ 282 (427)
||...++.....+..|+|++|||.+++|.+||++.+|++++|+ +|+||++|...+..+...... ..++.+++++|||.
T Consensus 206 kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~ 285 (889)
T TIGR03186 206 RYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWN 285 (889)
T ss_pred HHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCE
Confidence 9876432222456889999999999999999999999999998 999999999899888765322 46899999999999
Q ss_pred EEEE---------------------------------------------------------------------eCCCHHH
Q 014288 283 GFHV---------------------------------------------------------------------DGMDVLK 293 (427)
Q Consensus 283 ~~~V---------------------------------------------------------------------dg~D~~a 293 (427)
++.| +|+|+.+
T Consensus 286 vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~ 365 (889)
T TIGR03186 286 VIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARK 365 (889)
T ss_pred EEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHH
Confidence 9999 5999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 294 VREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 294 v~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
|++|++.|.+ ..++|++|.++|.+++|-+..
T Consensus 366 i~~A~~~A~~---~~~~PTvIla~TvkG~G~~~~ 396 (889)
T TIGR03186 366 LYAAYDRAVR---HEGRPTVILAKTMKGFGMGAI 396 (889)
T ss_pred HHHHHHHHHh---CCCCCEEEEEEeeecCCCCcc
Confidence 9998877753 235899999999999997543
No 28
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.89 E-value=3.7e-21 Score=209.34 Aligned_cols=257 Identities=18% Similarity=0.097 Sum_probs=190.4
Q ss_pred cccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCE
Q 014288 62 LPVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDS 134 (427)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~Gq-Ea~~vg~~~~L~~------~D~ 134 (427)
|+|+|++++-+|++.+...++.+..+..++...+++.........++.|+..++.+. +...+.....|+. .|.
T Consensus 54 t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD~ 133 (885)
T TIGR00759 54 TDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGDL 133 (885)
T ss_pred CCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCE
Confidence 899999999999988888888888888888777776544433344667776666444 4445556677874 688
Q ss_pred EEcCCcchHHHH------hcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHh
Q 014288 135 VVSTYRDHVHAL------SKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 208 (427)
Q Consensus 135 v~~~yR~~~~~L------a~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~ 208 (427)
|++ .+|+... ..|.-.++-+..+..... ..|-++..|....+-.+...+|+||.|++.|+|+|++.|+..
T Consensus 134 VlS--KGHasp~lYA~L~l~G~ls~e~L~~FRq~~~--g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~ 209 (885)
T TIGR00759 134 VFF--QGHAAPGIYARAFLEGRLTEEQLDNFRQEVQ--GDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLE 209 (885)
T ss_pred EEE--CCcHHHHHHHHHHHcCCCCHHHHHHhcCCCC--CCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHH
Confidence 776 4666432 256433444454433211 122233334332222355578999999999999999999866
Q ss_pred hhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccccccccccc-CchhhcccccCCCcEEEE
Q 014288 209 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV 286 (427)
Q Consensus 209 ~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~G~~~~~V 286 (427)
.++.....+..|+|++|||.+++|.+||++.+|++++|+ +|+||++|...+..+...... ..++.++++++||.+++|
T Consensus 210 ~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V 289 (885)
T TIGR00759 210 NRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKV 289 (885)
T ss_pred hhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEE
Confidence 544333567899999999999999999999999999998 999999999899887764333 467899999999999999
Q ss_pred ---------------------------------------------------------------------eCCCHHHHHHH
Q 014288 287 ---------------------------------------------------------------------DGMDVLKVREV 297 (427)
Q Consensus 287 ---------------------------------------------------------------------dg~D~~av~~a 297 (427)
+|+|+.+|++|
T Consensus 290 ~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A 369 (885)
T TIGR00759 290 LWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAA 369 (885)
T ss_pred ecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHH
Confidence 59999999997
Q ss_pred HHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 298 AKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 298 ~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
+..|.+ ..++|++|.++|.+++|.+
T Consensus 370 ~~~A~~---~~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 370 YAAAQE---HKGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHHHHh---CCCCCEEEEEeeeecCCCC
Confidence 766643 2347999999999999987
No 29
>PRK05899 transketolase; Reviewed
Probab=99.88 E-value=1.8e-21 Score=211.17 Aligned_cols=147 Identities=24% Similarity=0.312 Sum_probs=122.6
Q ss_pred cccCCccCCCcchHHHHHHHHHHHHHhhhhhhc---CCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCc
Q 014288 182 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 257 (427)
Q Consensus 182 ~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~---~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y 257 (427)
++...+|+||+++|.|+|+|+|.+++++.++.. ..+++|||++|||++++|.+||+|++|+.++|| +++|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 455568999999999999999998775322211 127899999999999999999999999999999 8888999999
Q ss_pred cccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCC-CCC
Q 014288 258 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-ELR 333 (427)
Q Consensus 258 ~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~-~yR 333 (427)
+++.+... ...+++.+++++|||+++.|||+|+.++.+++++|. +.++|++|++.|+|++||+..++. .|+
T Consensus 192 ~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~----~~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 192 SIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----ASTKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred cccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHH----hcCCCEEEEEEeEeccCCccccCCCccc
Confidence 99876653 335789999999999999999999999988776654 446899999999999999866543 454
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.88 E-value=5.8e-21 Score=192.99 Aligned_cols=210 Identities=20% Similarity=0.171 Sum_probs=152.1
Q ss_pred ecccccCCCChHHHHHHH-HHhcCC------CCEEEcCCcchHHH------HhcCC-CHHHHHHHHhcccCCCccCCCCC
Q 014288 108 MFGFVHLYNGQEAVSTGF-IKLLKK------EDSVVSTYRDHVHA------LSKGV-PARAVMSELFGKATGCCRGQGGS 173 (427)
Q Consensus 108 ~~G~~~~~~GqEa~~vg~-~~~L~~------~D~v~~~yR~~~~~------La~g~-~~~~~~~el~g~~~g~~~G~ggs 173 (427)
+.|+...+.+.--+.+++ ..+|+. .|.|++ .+|+.. ...|. +.++ +..+.... +. .+-.+.
T Consensus 29 ~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDRvlS--kGHas~~lYA~L~l~G~~~~ed-L~~fr~~g-s~-p~l~g~ 103 (386)
T cd02017 29 IGGHIATFASAATLYEVGFNHFFRARGEGGGGDLVYF--QGHASPGIYARAFLEGRLTEEQ-LDNFRQEV-GG-GGLSSY 103 (386)
T ss_pred cCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCEEEe--CCcccHHHHHHHHHcCCCCHHH-HHhhccCC-CC-CCCCCC
Confidence 346666666665555555 567875 788665 455542 23564 4444 44433211 10 011111
Q ss_pred CccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEE
Q 014288 174 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVV 252 (427)
Q Consensus 174 ~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV 252 (427)
.+......++...+|++|+|++.|+|+|+|.|+...+++..+.+..|+|++|||++++|.+||++++|+.++|. +|+||
T Consensus 104 p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIv 183 (386)
T cd02017 104 PHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVV 183 (386)
T ss_pred CCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111122366678999999999999999999866554433467889999999999999999999999999996 99999
Q ss_pred EcCCcccccccccc-ccCchhhcccccCCCcEEEEe--------------------------------------------
Q 014288 253 ENNLWAIGMSHLRA-TSDPQIYKKGPAFGMPGFHVD-------------------------------------------- 287 (427)
Q Consensus 253 ~NN~y~is~~~~~~-~~~~d~~~~a~a~G~~~~~Vd-------------------------------------------- 287 (427)
++|++++..++... ....++.+++++|||.++.||
T Consensus 184 D~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l 263 (386)
T cd02017 184 NCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHF 263 (386)
T ss_pred ECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHh
Confidence 99999998887664 345789999999999999998
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 288 -------------------------GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 288 -------------------------g~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
|+|+.++.+|+.++.+ ..++|++|.++|.+++|.+
T Consensus 264 ~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 264 FGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred ccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence 9999999886665432 2468999999999999987
No 31
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.88 E-value=4.8e-21 Score=178.21 Aligned_cols=193 Identities=22% Similarity=0.313 Sum_probs=143.4
Q ss_pred ccccCCCChHHHHH-HHHHhcC--C-------CCEEEcCCcchH---HH--Hh-cCCCHHHHHHHHhcccCCCccCCCCC
Q 014288 110 GFVHLYNGQEAVST-GFIKLLK--K-------EDSVVSTYRDHV---HA--LS-KGVPARAVMSELFGKATGCCRGQGGS 173 (427)
Q Consensus 110 G~~~~~~GqEa~~v-g~~~~L~--~-------~D~v~~~yR~~~---~~--La-~g~~~~~~~~el~g~~~g~~~G~ggs 173 (427)
|+++.+...--+.+ .....|+ | .|+++.+ .+|+ .+ |+ +|+-+++-+..+ ++.... .+
T Consensus 31 GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~Lae~G~~p~eeL~~~-~~~~sr-----L~ 103 (243)
T COG3959 31 GHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLAEKGYFPEEELETF-RRIGSR-----LP 103 (243)
T ss_pred CCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHHHcCCCCHHHHHHh-ccCCCc-----CC
Confidence 57666766644444 3445443 3 4666654 3343 22 22 676666555533 222211 12
Q ss_pred Ccccc-ccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEE
Q 014288 174 MHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFV 251 (427)
Q Consensus 174 ~H~~~-~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~V 251 (427)
.|... ...++...+|+||+++++|+|+|++.|++ +.+..|+++.|||.+++|.+|||+.+|++++|. +|.|
T Consensus 104 ~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~-------~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiai 176 (243)
T COG3959 104 GHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLK-------GSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAI 176 (243)
T ss_pred CCCccCCCCceeecCCcccccchHHHHHHHHHhhc-------CCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEE
Confidence 33322 23466677899999999999999999988 467889999999999999999999999999999 8888
Q ss_pred EEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEec
Q 014288 252 VENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETYR 320 (427)
Q Consensus 252 V~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~R 320 (427)
|+-|..+++..+.+..+..++.++++||||.+++|||+|++++++++ +.++..+ +|.+|.+.|.+
T Consensus 177 vD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~----~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 177 VDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEAL----EKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred EecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHH----HhhhccCCCCeEEEEeccc
Confidence 88787789888887778889999999999999999999999988855 4555533 99999999865
No 32
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.88 E-value=2.2e-21 Score=194.76 Aligned_cols=144 Identities=24% Similarity=0.360 Sum_probs=115.4
Q ss_pred CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhc---CCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCC
Q 014288 181 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 256 (427)
Q Consensus 181 ~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~---~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~ 256 (427)
.++...+|+||+|++.|+|+|+|.|+++..++.+ .-+..|+|++|||++++|.+|||+.+|+.++|+ +|+||++|+
T Consensus 104 ~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~ 183 (332)
T PF00456_consen 104 PGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNG 183 (332)
T ss_dssp TT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEES
T ss_pred ceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCC
Confidence 4566678999999999999999999887665532 246789999999999999999999999999999 999999999
Q ss_pred ccccccccccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEecCCCCCCCCC
Q 014288 257 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLADP 329 (427)
Q Consensus 257 y~is~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~R~~gHs~~D~ 329 (427)
.++...+.... ..++.++.++|||.++.| ||+|++++++|+.+| +.. ++|++|.++|.+++|.+..+.
T Consensus 184 ~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a----~~~~~kP~~Ii~~TvkG~G~~~~e~ 253 (332)
T PF00456_consen 184 IQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEA----KASKGKPTVIIARTVKGKGVPFMEG 253 (332)
T ss_dssp EETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHH----HHSTSS-EEEEEEE-TTTTSTTTTT
T ss_pred cccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHH----HhcCCCCceeecceEEecCchhhcc
Confidence 88888765433 467899999999999998 999999998876655 343 799999999999999976543
No 33
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.87 E-value=3.5e-21 Score=208.19 Aligned_cols=227 Identities=21% Similarity=0.234 Sum_probs=161.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCcchHHHHhcC
Q 014288 73 EKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDHVHALSKG 149 (427)
Q Consensus 73 ~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR~~~~~La~g 149 (427)
+.+.++.++|.++-.. +|.+.++.. .. -.|++..+.|.--+.+++...++ +.|.++- .|...++.+..|
T Consensus 9 dl~~l~~~~l~~la~~-iR~~~i~~~-----~~--~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 9 ELRLLSIDELEKLCDE-LRRYLLESV-----SA--SGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHHH-----hc--cCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 4456777787766544 444444431 11 24777778888777778877888 5786554 577777777778
Q ss_pred CCHHHHHHHHhcccCCCccCCCCCCccccccCccc-CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc
Q 014288 150 VPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL-GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 228 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~-~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa 228 (427)
. . +-|..+.. .. | -+.|....+..+- ...|++|+++++|+|+|+|.|++ +.+.+|+|++|||+
T Consensus 81 ~-~-~~l~~~r~-~g----~--l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~~~GDG~ 144 (617)
T TIGR00204 81 R-R-EKFSTLRQ-KK----G--LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKK-------GADRKTVCVIGDGA 144 (617)
T ss_pred c-H-HHhcchhh-cC----C--cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhh-------CCCCEEEEEECCcc
Confidence 5 2 22222211 11 1 1122211111222 36788999999999999999987 46889999999999
Q ss_pred ccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccccc------------------------Cc---h-hhc------
Q 014288 229 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS------------------------DP---Q-IYK------ 274 (427)
Q Consensus 229 ~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~------------------------~~---d-~~~------ 274 (427)
+++|.+||++|.|+.++||+|+||+||+|+++++...+.. .+ + +.+
T Consensus 145 ~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (617)
T TIGR00204 145 ITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESM 224 (617)
T ss_pred cccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999987642210 00 1 223
Q ss_pred --------ccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 275 --------KGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 275 --------~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
+++++||.++ .|||+|+.++.++++ .++..++|++|+++|.|++|.+..
T Consensus 225 k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~----~ak~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 225 KGLVVPGTFFEELGFNYIGPVDGHDLLELIETLK----NAKKLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hhccCccchHHHcCCcEEcccCCCCHHHHHHHHH----HHhcCCCCEEEEEEecCCCCCchh
Confidence 3788999999 899999999988665 556677899999999999997654
No 34
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.87 E-value=3.9e-21 Score=206.94 Aligned_cols=236 Identities=19% Similarity=0.188 Sum_probs=163.4
Q ss_pred ccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCcc
Q 014288 65 VAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRD 141 (427)
Q Consensus 65 ~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR~ 141 (427)
++...--.+.++++.+++.++-.. +|.+.++.. . . + .|+...+.|.--+.+++-..++ +.|.++. .|..
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~a~~-iR~~~~~~~--~---~-~-~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~ 78 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQLADE-IREFLIDVV--S---K-T-GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQA 78 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHHHHH-HHHHHHHHH--H---h-c-CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHH
Confidence 344443355667888887766443 444444332 1 2 1 4676667777666666655665 4575554 3444
Q ss_pred hHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccc-cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceE
Q 014288 142 HVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 220 (427)
Q Consensus 142 ~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~-~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~v 220 (427)
.++....|. .++ +..+ .+..+ . +.|.... ..++...+|++|+++|.|+|+|+|.|+++ ++++.|
T Consensus 79 y~~~~~~g~-~~~-l~~~-~~~~s----~--~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~------~~~~~v 143 (580)
T PRK05444 79 YPHKILTGR-RDR-FDTL-RQKGG----L--SGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKG------GEDRKV 143 (580)
T ss_pred HHHHHHhCc-HHH-hcCc-ccCCC----C--CCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhC------CCCCeE
Confidence 444455664 222 1111 11111 1 1232221 13455678999999999999999988763 367899
Q ss_pred EEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccc---cCchhhcccccCCCcEE-EEeCCCHHHHHH
Q 014288 221 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT---SDPQIYKKGPAFGMPGF-HVDGMDVLKVRE 296 (427)
Q Consensus 221 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~---~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~ 296 (427)
||++|||++++|.+||+|++|+++++|+++||+||+|+++.+..... ...++.+++++|||+++ .|||+|+.++.+
T Consensus 144 ~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~ 223 (580)
T PRK05444 144 VAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIE 223 (580)
T ss_pred EEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999887764331 23456678999999999 599999999988
Q ss_pred HHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 297 VAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 297 a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
+++ ++++.++|++|+++|.|++|.+..
T Consensus 224 al~----~a~~~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 224 TLK----NAKDLKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHH----HHHhCCCCEEEEEEecCCcCCChh
Confidence 665 445667999999999999997754
No 35
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.87 E-value=9.5e-22 Score=186.44 Aligned_cols=189 Identities=15% Similarity=0.177 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHhcCC-CCEEEcCCcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcch
Q 014288 116 NGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 194 (427)
Q Consensus 116 ~GqEa~~vg~~~~L~~-~D~v~~~yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~l 194 (427)
.||++.++.++..|.. .|++|+.|+.+..- ++++|+++. ...| .++|......++....|.||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qfs-----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQFS-----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhcC-----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 6999999888888886 59999999976521 256777762 1112 46788776778888999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccH---HHHHHHHHHcCCC-eEEEEEcCCcccccccccc-ccC
Q 014288 195 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TSD 269 (427)
Q Consensus 195 p~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~---~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~-~~~ 269 (427)
++|+|+++. +++.+|+|++|||++++|.+ |++..++...++. |+.|++||+|+|++++... .+.
T Consensus 69 s~A~G~a~d-----------~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~ 137 (227)
T cd02011 69 SHAYGAVFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISH 137 (227)
T ss_pred HHHHHhhhc-----------CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCc
Confidence 999999864 68899999999999999986 8888888888888 8888899999999998865 446
Q ss_pred chhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc-----------c---CCCE--EEEEEEecCC-CCCCCC
Q 014288 270 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-----------G---EGPT--LVECETYRFR-GHSLAD 328 (427)
Q Consensus 270 ~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~-----------~---~gP~--lIe~~t~R~~-gHs~~D 328 (427)
.++.+++++|||+.+.|||+|++++++++++|+++++. . .+|. +|.++|.+++ |..+.|
T Consensus 138 e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p~~~~ 213 (227)
T cd02011 138 EELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGPKEVD 213 (227)
T ss_pred hhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCCcccC
Confidence 78999999999999999999999999999988886552 1 1221 5667887776 333334
No 36
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.87 E-value=1.9e-20 Score=206.48 Aligned_cols=259 Identities=18% Similarity=0.136 Sum_probs=192.2
Q ss_pred ccccccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcC------C
Q 014288 59 RRRLPVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLK------K 131 (427)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~Gq-Ea~~vg~~~~L~------~ 131 (427)
...|+|+|++++-+|++.+...++.+-.+..++...+++........+++.|+..++.+. +...++....|+ .
T Consensus 65 ~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~ 144 (896)
T PRK13012 65 LLTTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGG 144 (896)
T ss_pred CCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCC
Confidence 344899999999999988888888888888888888877665555566778887766443 455566677787 4
Q ss_pred CCEEEcCCcchHHHH------hcC-CCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHH
Q 014288 132 EDSVVSTYRDHVHAL------SKG-VPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTS 204 (427)
Q Consensus 132 ~D~v~~~yR~~~~~L------a~g-~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~ 204 (427)
.|.|++. +|+... ..| ++.++ +..+..... ..|-.+..|.+..+-.+.-.+|+||.|++.|+|+|++.
T Consensus 145 ~D~V~sk--GHasp~lYA~~~l~G~l~~e~-L~~fR~~~~--~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ 219 (896)
T PRK13012 145 GDLVYFQ--PHSAPGIYARAFLEGRLSEEQ-LDHFRQEIG--GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFM 219 (896)
T ss_pred CCEEEEC--cchHHHHHHHHHHcCCCCHHH-HHHhcCCCC--CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhc
Confidence 7887763 666432 256 45444 444432211 12223333433222234456899999999999999999
Q ss_pred HHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccccccccccc-CchhhcccccCCCc
Q 014288 205 KYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMP 282 (427)
Q Consensus 205 k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~G~~ 282 (427)
||...+......++.|+||+|||.+++|.+||++.+|++++|. +|+||++|...+..+...... ..++.++++++||.
T Consensus 220 ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~ 299 (896)
T PRK13012 220 RYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWN 299 (896)
T ss_pred ccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCE
Confidence 8763221112457899999999999999999999999999998 999999999888887755332 36889999999999
Q ss_pred EEEE--------------------------e-------------------------------------------CCCHHH
Q 014288 283 GFHV--------------------------D-------------------------------------------GMDVLK 293 (427)
Q Consensus 283 ~~~V--------------------------d-------------------------------------------g~D~~a 293 (427)
++.| | |+|+.+
T Consensus 300 Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~ 379 (896)
T PRK13012 300 VIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRK 379 (896)
T ss_pred EEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHH
Confidence 9999 8 999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 294 VREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 294 v~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
|++|++.|.+ ..++|++|.++|.+++|-+
T Consensus 380 i~~A~~~a~~---~~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 380 VYAAYAAAVR---HKGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HHHHHHHHHh---CCCCCEEEEEEeeecCCCC
Confidence 9998876643 2357999999999999976
No 37
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.86 E-value=1.4e-20 Score=185.57 Aligned_cols=233 Identities=17% Similarity=0.157 Sum_probs=174.8
Q ss_pred CCcchHHHHhcCCCHH-HHHHHHhcccC------CCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhh
Q 014288 138 TYRDHVHALSKGVPAR-AVMSELFGKAT------GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREV 210 (427)
Q Consensus 138 ~yR~~~~~La~g~~~~-~~~~el~g~~~------g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~ 210 (427)
-||+|+.....|.++. .++.+.++..+ |+..+.+|.+|+... ++......+|.++++|.|+++|.+.++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~-- 89 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARG-- 89 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhC--
Confidence 4889999999999888 88999888766 666666676665543 666778899999999999999988763
Q ss_pred hhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccc-----------------ccCchhh
Q 014288 211 LKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------------TSDPQIY 273 (427)
Q Consensus 211 ~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~-----------------~~~~d~~ 273 (427)
.++..|++++|||++..+.+ |+|+.|..+++||+|||.||+|...|..+.. ....|+.
T Consensus 90 ----~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~ 164 (300)
T PRK11864 90 ----EKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVP 164 (300)
T ss_pred ----CCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHH
Confidence 23455667999999876665 9999999999999999999998776643321 1236788
Q ss_pred cccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC----------------------CCC
Q 014288 274 KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA----------------------DPD 330 (427)
Q Consensus 274 ~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~----------------------D~~ 330 (427)
.++.++|++++ +++..|+.++.+++++|+ +.+||++|++.+.-..++-.. |+.
T Consensus 165 ~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g 240 (300)
T PRK11864 165 DIMAAHKVPYVATASIAYPEDFIRKLKKAK----EIRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENG 240 (300)
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECC
Confidence 89999999877 888889999888777775 478999999977655544211 111
Q ss_pred CC----CCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 014288 331 EL----RDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFAD 384 (427)
Q Consensus 331 ~y----R~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~ 384 (427)
.+ +++. ....+.+.|+..|-+..-++..+.+|+++++++++++.++.-.+.++
T Consensus 241 ~~~~~~~~~~-~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 241 KFKLNSPSKT-LLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred EEEEccCCcc-ccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0110 00112346888888888888899999999999999999887655543
No 38
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.85 E-value=1.1e-19 Score=195.60 Aligned_cols=279 Identities=14% Similarity=0.171 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCCCCCCCccCCccceeeeccCCCCCCcc--cccccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014288 22 GRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVR--RRLPVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMC 99 (427)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~ 99 (427)
+|.+...++.|.+.|+.- .+++|.-.........- -.++++++.+--.+-+.++.++|.++-.. +|.+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~e-iR~~ii~~-- 98 (641)
T PLN02234 25 NRNPSLKYLKPSSMSSTK---YSKVRATTFSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDE-LRSDVIFN-- 98 (641)
T ss_pred ccCCccceeccccccccc---cceeEEEccCCcccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHH-HHHHHHHH--
Confidence 344444455554443221 25665544333221100 11334555553344456777887776555 22223321
Q ss_pred HHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCcc
Q 014288 100 AQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHM 176 (427)
Q Consensus 100 ~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~ 176 (427)
... -.|++..+.|.--+.+++...|+ |.|.++- .|...++.+..|..- + |..+. +.. | -+.|.
T Consensus 99 ---~~~--~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~-~-l~t~r-~~g----g--l~G~p 164 (641)
T PLN02234 99 ---VSK--TGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRG-K-MKTIR-QTN----G--LSGYT 164 (641)
T ss_pred ---Hhh--cCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhh-h-hcccc-cCC----C--cCCCC
Confidence 111 25788888998888888887887 6787654 577777777666421 1 22111 110 1 12232
Q ss_pred ccc-cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcC
Q 014288 177 FSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255 (427)
Q Consensus 177 ~~~-~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN 255 (427)
-.. ..+...+.|++|+++++|+|+|+|.+++ +.+..|||++|||++++|.+||||+.|+..+-++|+|+++|
T Consensus 165 ~~~es~~d~~~tGslg~glS~a~GmA~a~~l~-------g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN 237 (641)
T PLN02234 165 KRRESEHDSFGTGHSSTTLSAGLGMAVGRDLK-------GMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDN 237 (641)
T ss_pred CCCCCCCcEECCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECC
Confidence 111 1244557899999999999999998887 46788999999999999999999999998787799999999
Q ss_pred Ccc------cccccccccc----------C-----chhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 014288 256 LWA------IGMSHLRATS----------D-----PQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTL 313 (427)
Q Consensus 256 ~y~------is~~~~~~~~----------~-----~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~l 313 (427)
+.. ...+...... + ....+++++|||.++ .|||+|+.++.++++.+. .....+|++
T Consensus 238 ~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k--~~~~~~P~v 315 (641)
T PLN02234 238 KQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLK--STKTIGPVL 315 (641)
T ss_pred CCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHH--hcCCCCCEE
Confidence 852 2211111000 0 245678999999999 999999999988776542 112358999
Q ss_pred EEEEEecCCCCCCCCC
Q 014288 314 VECETYRFRGHSLADP 329 (427)
Q Consensus 314 Ie~~t~R~~gHs~~D~ 329 (427)
|+++|.+++|.+..+.
T Consensus 316 I~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 316 IHVVTEKGRGYPYAER 331 (641)
T ss_pred EEEEEecCCCcchhhc
Confidence 9999999999987654
No 39
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.84 E-value=2.1e-19 Score=197.68 Aligned_cols=259 Identities=19% Similarity=0.152 Sum_probs=190.9
Q ss_pred ccccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCC-hHHHHHHHHHhcCC------CC
Q 014288 61 RLPVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNG-QEAVSTGFIKLLKK------ED 133 (427)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~G-qEa~~vg~~~~L~~------~D 133 (427)
.|+|+|++++-+|++.+...++.+.....++...++..........++.|+..++.+ -+...++....|+. +|
T Consensus 59 ~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D 138 (891)
T PRK09405 59 TTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD 138 (891)
T ss_pred CCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 489999999999999999999999999999998888766554444556777666533 45556677788874 68
Q ss_pred EEEcCCcchHHHH------hcCC-CHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHH
Q 014288 134 SVVSTYRDHVHAL------SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKY 206 (427)
Q Consensus 134 ~v~~~yR~~~~~L------a~g~-~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~ 206 (427)
+|++. +|+..+ ..|. +.++ +..+....++ .|-.+..|.+..+-.+...+++||.|++.|+|+|++.||
T Consensus 139 ~V~sk--GHasp~lYA~~~l~G~l~~e~-L~~fR~~~~g--~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~ky 213 (891)
T PRK09405 139 LVFFQ--GHASPGIYARAFLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKY 213 (891)
T ss_pred EEEEC--chHHHHHHHHHHHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcc
Confidence 77754 666532 2564 4444 4444432111 122333343322222334578999999999999999886
Q ss_pred HhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccccccccccc-CchhhcccccCCCcEE
Q 014288 207 RREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGF 284 (427)
Q Consensus 207 ~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~G~~~~ 284 (427)
...+......++.|+||+|||.+++|.+||++.+|++++|. +|+||++|...+..+...... ..++.++++++||.++
T Consensus 214 l~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi 293 (891)
T PRK09405 214 LENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVI 293 (891)
T ss_pred ccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEE
Confidence 53221112457899999999999999999999999999998 999999998888887764322 4688999999999999
Q ss_pred EE--------------------------e-------------------------------------------CCCHHHHH
Q 014288 285 HV--------------------------D-------------------------------------------GMDVLKVR 295 (427)
Q Consensus 285 ~V--------------------------d-------------------------------------------g~D~~av~ 295 (427)
.| | |+|+.+|+
T Consensus 294 ~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~ 373 (891)
T PRK09405 294 KVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVY 373 (891)
T ss_pred EEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHH
Confidence 99 4 99999999
Q ss_pred HHHHHHHHHHHccCCCEEEEEEEecCCCC-CCC
Q 014288 296 EVAKEAIERARRGEGPTLVECETYRFRGH-SLA 327 (427)
Q Consensus 296 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gH-s~~ 327 (427)
+|++.|.+ ..++|++|.++|.+++|. +..
T Consensus 374 ~A~~~A~~---~~~~PtvIia~TvkG~G~~~~~ 403 (891)
T PRK09405 374 AAYKAAVE---HKGQPTVILAKTIKGYGMGEAG 403 (891)
T ss_pred HHHHHHHh---CCCCCEEEEEeceecCCCCccc
Confidence 98876653 236899999999999998 443
No 40
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.83 E-value=1.8e-19 Score=195.52 Aligned_cols=236 Identities=20% Similarity=0.186 Sum_probs=160.7
Q ss_pred ccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCcc
Q 014288 65 VAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRD 141 (427)
Q Consensus 65 ~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR~ 141 (427)
++...--++.++++.++|.++-.. +|.+.++... .. .|+...+.|.--+.+++...++ |.|.++- .|..
T Consensus 9 l~~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~~----~~---~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~ 80 (641)
T PRK12571 9 LDRIKGPADLRALSDAELEQLADE-LRAEVISAVS----ET---GGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQC 80 (641)
T ss_pred hhhcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHHH----Hh---CCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHH
Confidence 555554556677888887776544 4444444321 12 2777778888777777877776 5786544 5777
Q ss_pred hHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccC-cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceE
Q 014288 142 HVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH-NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 220 (427)
Q Consensus 142 ~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~-~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~v 220 (427)
.++.+..|. .+-+..+... .+ .+ .|....+. .-....++-+.+++.|+|+|+|.++. ++++.|
T Consensus 81 Y~~~~l~g~--~~~l~~~r~~-~~----l~--g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~-------~~~~~v 144 (641)
T PRK12571 81 YPHKILTGR--RDRFRTLRQK-GG----LS--GFTKRSESEYDPFGAAHSSTSISAALGFAKARALG-------QPDGDV 144 (641)
T ss_pred HHHHHHhCC--HHHHhhhhhC-CC----cC--CCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHh-------CCCCeE
Confidence 777777775 2223322211 11 11 12111110 10012233355678888888888776 468899
Q ss_pred EEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc-------ccccCchh---------------------
Q 014288 221 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------RATSDPQI--------------------- 272 (427)
Q Consensus 221 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~-------~~~~~~d~--------------------- 272 (427)
+|++|||++++|.+||++++|+.+++|+++||+||+|+++.+.. .......+
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDG 224 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999988764 11111111
Q ss_pred --------------hcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 014288 273 --------------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD 328 (427)
Q Consensus 273 --------------~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t~R~~gHs~~D 328 (427)
.+++++|||.++ .|||+|+.++.++++.+ ++ .++|++|+++|.+++|.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~a----k~~~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 225 ARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAA----RARADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred HHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHH----HhCCCCCEEEEEEecCccCcchhh
Confidence 368899999999 79999999888866544 44 478999999999999987553
No 41
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.83 E-value=2.4e-19 Score=194.27 Aligned_cols=236 Identities=16% Similarity=0.190 Sum_probs=161.7
Q ss_pred cccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCc
Q 014288 64 VVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 140 (427)
Q Consensus 64 ~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR 140 (427)
.++...--.+.+.++.+++.++-.. +|-+.++.. ... .|++.++.|.--+.+++...|+ |.|.++- .|.
T Consensus 33 ~l~~i~~p~dlk~l~~~~l~~la~~-iR~~ii~~~----~~~---~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ 104 (677)
T PLN02582 33 LLDTINYPIHMKNLSVKELKQLADE-LRSDVIFNV----SKT---GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQ 104 (677)
T ss_pred hhhhCCCHHHHhhCCHHHHHHHHHH-HHHHHHHHH----Hhc---CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcch
Confidence 4555554445567888888777655 333334322 122 3777778888777777877776 6887765 577
Q ss_pred chHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccc-cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCce
Q 014288 141 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 219 (427)
Q Consensus 141 ~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~-~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~ 219 (427)
..++.+..|.. ++ |..+.. .. | -+.|.... .....-..|++|+++++|+|+|+|.+++ +.+.+
T Consensus 105 ay~~~~l~gr~-~~-l~~~r~-~g----~--l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~ 168 (677)
T PLN02582 105 SYPHKILTGRR-DK-MHTMRQ-TN----G--LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLK-------GKKNN 168 (677)
T ss_pred HHHHHHHHccH-HH-hccccc-CC----C--cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhc-------CCCCE
Confidence 77777777751 11 222111 10 1 12222111 1233456899999999999999998887 46789
Q ss_pred EEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc----------ccc-------ccC-------------
Q 014288 220 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH----------LRA-------TSD------------- 269 (427)
Q Consensus 220 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~----------~~~-------~~~------------- 269 (427)
|||++|||++++|.+||+||.|+.+++|+|+||+||+. +|.|. ... +.+
T Consensus 169 v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~-~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~ 247 (677)
T PLN02582 169 VVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGV 247 (677)
T ss_pred EEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC-ccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999984 22211 000 000
Q ss_pred --------chhh----------------cccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEEEecCC
Q 014288 270 --------PQIY----------------KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYRFR 322 (427)
Q Consensus 270 --------~d~~----------------~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~--~gP~lIe~~t~R~~ 322 (427)
..+. .+++++||.++ .|||+|+.++.++++.+ +.. ++|++|+++|.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~----k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 248 TKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREV----KSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred HHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHH----HhcCCCCCEEEEEEecCCC
Confidence 0010 24788999977 99999999988866544 443 59999999999999
Q ss_pred CCCCCC
Q 014288 323 GHSLAD 328 (427)
Q Consensus 323 gHs~~D 328 (427)
|...++
T Consensus 324 G~~~ae 329 (677)
T PLN02582 324 GYPYAE 329 (677)
T ss_pred CCChhh
Confidence 988663
No 42
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.83 E-value=2.7e-20 Score=174.15 Aligned_cols=122 Identities=24% Similarity=0.211 Sum_probs=98.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++++||+++|+|+|+++| .+++.|||++|||+++|. .++|.+|+++++|+++||.||+ +++...
T Consensus 49 ~~~~g~mG~~lpaaiGa~la-----------~p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~yg~~~ 114 (196)
T cd02013 49 PLSFGNCGYALPAIIGAKAA-----------APDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNR-QWGAEK 114 (196)
T ss_pred CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHH
Confidence 45679999999999999999 688999999999999997 8999999999999988887765 333322
Q ss_pred cc------------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 014288 264 LR------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 322 (427)
Q Consensus 264 ~~------------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 322 (427)
.. ....+|+.++|++||+++++|+. +.++.+++++|++.++ .++|+|||+.+.+..
T Consensus 115 ~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~-~~~p~liev~v~~~~ 182 (196)
T cd02013 115 KNQVDFYNNRFVGTELESESFAKIAEACGAKGITVDK--PEDVGPALQKAIAMMA-EGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence 11 11357999999999999999974 6688787777765433 578999999986543
No 43
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.82 E-value=4.4e-20 Score=173.36 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=98.8
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .|++.|||++|||+++|. .++|.+|.++++|+++||.||+ +++...
T Consensus 53 ~~~~GsmG~~lpaaiGa~la-----------~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~-~yg~~~ 118 (202)
T cd02006 53 CGQAGPLGWTVPAALGVAAA-----------DPDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNA-YLGLIR 118 (202)
T ss_pred cCCccchhhhhHHHHhHHhh-----------CCCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCc-hHHHHH
Confidence 45679999999999999999 789999999999999998 7999999999999999999887 444322
Q ss_pred cccc----------------------cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 264 LRAT----------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 264 ~~~~----------------------~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
..|. ..+|+.++|++||+++.+|+ ++.++.+++++|++..++.++|+|||+.+.+.
T Consensus 119 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 119 QAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred HHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 1110 14799999999999999997 45677777777765443467999999988543
No 44
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.81 E-value=1.3e-19 Score=165.81 Aligned_cols=116 Identities=29% Similarity=0.352 Sum_probs=93.7
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcC-Ccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN-~y~is~~ 262 (427)
.+..|+||+++|.|+|+++| .++++|||++|||+++++ .++|++|++++||+++||.|| +|++...
T Consensus 44 ~~~~g~mG~~lp~AiGa~la-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~ 110 (172)
T cd02004 44 AGTFGTLGVGLGYAIAAALA-----------RPDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLD 110 (172)
T ss_pred CCCCCcccchHHHHHHHHHh-----------CCCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchh
Confidence 45679999999999999999 678999999999999987 799999999999988888776 5666442
Q ss_pred ccc-----------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 263 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 263 ~~~-----------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
.+. ....+|+.+++++||+++.+|+. +.++.++++ .+++.++|+|||+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~----~a~~~~~p~liev~i 171 (172)
T cd02004 111 GQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTT--PEELKPALK----RALASGKPALINVII 171 (172)
T ss_pred hhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHH----HHHHcCCCEEEEEEc
Confidence 221 11357899999999999999984 566655554 445568999999975
No 45
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.80 E-value=2e-19 Score=166.71 Aligned_cols=117 Identities=29% Similarity=0.502 Sum_probs=93.7
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++++||+++|.|+|+++| .++++|||++|||+++++ .++|.+|+++++|+++||.||+ +++...
T Consensus 46 ~~~~g~mG~~lp~aiGa~la-----------~~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~-~~~~~~ 111 (186)
T cd02015 46 SGGLGTMGFGLPAAIGAKVA-----------RPDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNG-SLGMVR 111 (186)
T ss_pred CCCccchhchHHHHHHHHHh-----------CCCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHH
Confidence 34679999999999999999 678899999999999987 7889999999999998888886 332211
Q ss_pred c-------------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 L-------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~-------------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. .....+|+.++|++||+++++|++. .++ +++++++++.++|+|||+.+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~el----~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 112 QWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEKP--EEL----EAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCCH--HHH----HHHHHHHHhCCCCEEEEEEeCC
Confidence 0 0113578999999999999999863 454 4455566667899999999864
No 46
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.78 E-value=8.9e-19 Score=160.76 Aligned_cols=114 Identities=30% Similarity=0.419 Sum_probs=92.7
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 263 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~ 263 (427)
++ |+||+++|.|+|+++| .+++.|||++|||+++++ .++|.+|.++++|+++||.||+ |++....
T Consensus 47 ~~-g~mG~~lp~aiGaala-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 47 RG-GGLGWGLPAAVGAALA-----------NPDRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred CC-ccccchHHHHHHHHhc-----------CCCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 45 9999999999999999 578899999999999998 6899999999999999999886 6664321
Q ss_pred cc-----------------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 264 LR-----------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 264 ~~-----------------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+. ....+|+.+++++||+++++|++ +.++.+++++| ++.++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~vi~v~v 178 (178)
T cd02002 113 LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREA----LAEGGPALIEVVV 178 (178)
T ss_pred HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHH----HhCCCCEEEEEEC
Confidence 11 01347899999999999999986 56666655555 4568999999963
No 47
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.78 E-value=9.4e-19 Score=158.15 Aligned_cols=118 Identities=29% Similarity=0.375 Sum_probs=95.3
Q ss_pred cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccc
Q 014288 182 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 261 (427)
Q Consensus 182 ~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~ 261 (427)
.+....++||+++|.|+|++++ .++++|||++|||+++++ +++|++|.++++|+++||.||++...+
T Consensus 40 ~~~~~~g~~G~~~~~a~Gaa~a-----------~~~~~vv~~~GDG~~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~ 106 (168)
T cd00568 40 LTSTGFGAMGYGLPAAIGAALA-----------APDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTI 106 (168)
T ss_pred EeCCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcCcHHhcc--HHHHHHHHHcCCCcEEEEEECCccHHH
Confidence 3455789999999999999999 568899999999999985 899999999999999999988744433
Q ss_pred ccc-----------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 262 SHL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 262 ~~~-----------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
... .....+++.+++++||+++++|++ +.++.+ +++++++.++|++||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~----a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEA----ALAEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHH----HHHHHHhCCCCEEEEEEC
Confidence 321 222456899999999999999986 445544 555566788999999975
No 48
>PRK05261 putative phosphoketolase; Provisional
Probab=99.77 E-value=4.9e-18 Score=184.95 Aligned_cols=206 Identities=18% Similarity=0.232 Sum_probs=157.3
Q ss_pred CeecccccCCCChHHHHHHHHHhcCCC--CEEEcCCcchHHHHh------cC--------CCHHHH-HHHHhcccCCCcc
Q 014288 106 GKMFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHALS------KG--------VPARAV-MSELFGKATGCCR 168 (427)
Q Consensus 106 gk~~G~~~~~~GqEa~~vg~~~~L~~~--D~v~~~yR~~~~~La------~g--------~~~~~~-~~el~g~~~g~~~ 168 (427)
-++.|++.++.|+-.+.+.+..++++. |.++-.--||+..+. .| ++.++. |..++.+....
T Consensus 46 ~r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~p-- 123 (785)
T PRK05261 46 PRLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFP-- 123 (785)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCC--
Confidence 346799999999999999999999985 655554457765432 34 333331 33344333211
Q ss_pred CCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccH---HHHHHHHHHcC
Q 014288 169 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWK 245 (427)
Q Consensus 169 G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~---~EaLn~A~~~~ 245 (427)
| |.+.|......++....|.||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++...+
T Consensus 124 g-g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~-----------~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~ 191 (785)
T PRK05261 124 G-GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPAT 191 (785)
T ss_pred C-CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc-----------CCCCEEEEEECcCchhhhhhHHHhhhhhhccccc
Confidence 1 345677655677888899999999999999987 67889999999999999973 66666666666
Q ss_pred CC-eEEEEEcCCccccccccccc-cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc-----------c---C
Q 014288 246 LP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-----------G---E 309 (427)
Q Consensus 246 LP-vi~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~-----------~---~ 309 (427)
+. |+.|+++|+|+|++++.... ...++.+++++|||+.+.|||+|+.++++++++|++.+.+ + .
T Consensus 192 ~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~ 271 (785)
T PRK05261 192 DGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTT 271 (785)
T ss_pred CCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66 78888899999999988654 4478999999999999999999999999987766664433 4 5
Q ss_pred CCE--EEEEEEecCCCCC
Q 014288 310 GPT--LVECETYRFRGHS 325 (427)
Q Consensus 310 gP~--lIe~~t~R~~gHs 325 (427)
+|+ +|.++|.+++|-+
T Consensus 272 ~P~wp~Ii~rT~kG~g~p 289 (785)
T PRK05261 272 RPRWPMIVLRTPKGWTGP 289 (785)
T ss_pred CCCceEEEEECCccCCCC
Confidence 899 9999999988744
No 49
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.76 E-value=3.6e-18 Score=160.85 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=94.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.++.|+||+++|.|+|+++| .+++.|||++|||+++++ .++|.+|.++++|+++||.||+ |++...
T Consensus 44 ~~~~gsmG~~lpaAiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 110 (205)
T cd02003 44 EYGYSCMGYEIAAGLGAKLA-----------KPDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINN 110 (205)
T ss_pred CCCcchhhhHHHHHHHHHHh-----------CCCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHH
Confidence 35789999999999999999 688999999999999997 7899999999999877777765 443210
Q ss_pred cc-----------c------------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 263 HL-----------R------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 263 ~~-----------~------------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
.+ . ....+|+.++|++||+++++|+ +++++.+++++| .+.++|+|||+.+.
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a----~~~~gp~lIeV~v~ 184 (205)
T cd02003 111 LQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKA----KASDRTTVIVIKTD 184 (205)
T ss_pred HHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHH----HhCCCCEEEEEEee
Confidence 00 0 0124789999999999999995 666776655554 46689999999986
Q ss_pred cC
Q 014288 320 RF 321 (427)
Q Consensus 320 R~ 321 (427)
+.
T Consensus 185 ~~ 186 (205)
T cd02003 185 PK 186 (205)
T ss_pred cc
Confidence 53
No 50
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.76 E-value=1.9e-18 Score=159.18 Aligned_cols=118 Identities=23% Similarity=0.363 Sum_probs=94.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.++++.||+++|.|+|+++| .+++.|||++|||+++++ .++|.+|+++++|+++||.||+ |++...
T Consensus 44 ~~~~g~mG~~lp~aiGa~la-----------~~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~ 110 (177)
T cd02010 44 SNGLATMGVALPGAIGAKLV-----------YPDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKW 110 (177)
T ss_pred CCCChhhhhHHHHHHHHHHh-----------CCCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHH
Confidence 45789999999999999999 688999999999999987 7999999999999888888775 444211
Q ss_pred cc-------c--cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HL-------R--ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~-------~--~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.+ . ....+|+.++|++||+++++|+ +++++.++++++ ++.++|+|||+.+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~liev~~~~ 171 (177)
T cd02010 111 KQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERA----LAADGVHVIDCPVDY 171 (177)
T ss_pred HHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHH----HhCCCCEEEEEEecc
Confidence 00 0 0124689999999999999997 556766655555 457899999999854
No 51
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.76 E-value=1.1e-17 Score=160.59 Aligned_cols=219 Identities=21% Similarity=0.232 Sum_probs=144.2
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCcchHHHHhc
Q 014288 72 KEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDHVHALSK 148 (427)
Q Consensus 72 ~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR~~~~~La~ 148 (427)
.+.+.++.+||.+|-.. +|.+ -...-.+..|++.++.|--...+|+..+++ |.|.++- .|+.+.|.|..
T Consensus 8 ~dlk~ls~~eL~~La~e---iR~~-----ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 8 EDLKKLSIEELEQLAQE---IREF-----IIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHTTS-GGGHHHHHHH---HHHH-----HHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHcCCHHHHHHHHHH---HHHH-----HHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 44567888899888766 5544 223356667999999999999999999998 6887764 79999999987
Q ss_pred CCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc
Q 014288 149 GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 228 (427)
Q Consensus 149 g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa 228 (427)
|..- -|..+.. ..|-.|.......++-. -+.|+-+.++++|+|+|.|..++ +.+..||+++|||+
T Consensus 80 GR~~--~f~TlRq-----~gGlSGF~~r~ES~~D~-f~~GHsstsiSaa~Gma~ar~l~-------~~~~~vVaVIGDGa 144 (270)
T PF13292_consen 80 GRRD--RFHTLRQ-----YGGLSGFPKRSESEYDA-FGAGHSSTSISAALGMAVARDLK-------GEDRKVVAVIGDGA 144 (270)
T ss_dssp TTCC--CGGGTTS-----TTS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHH-------TS---EEEEEETTG
T ss_pred CcHH--Hhchhhh-----cCCcCCCCCcccCCCCc-ccCCccHhHHHHHHHHHHHHHhc-------CCCCcEEEEECCcc
Confidence 7431 1111110 01222211111112222 24578899999999999998877 56889999999999
Q ss_pred ccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccc-------c---------------------------------c
Q 014288 229 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------T---------------------------------S 268 (427)
Q Consensus 229 ~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~-------~---------------------------------~ 268 (427)
+.-|+.+|+||-|+..+-++|+|+.||+..|+-....- + .
T Consensus 145 lt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K 224 (270)
T PF13292_consen 145 LTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLK 224 (270)
T ss_dssp GGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---------------------------------------
T ss_pred hhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Confidence 99999999999999999999999999998776432100 0 0
Q ss_pred CchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 269 DPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 269 ~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
.. ...+++.+|+.++ .|||+|..++.+ +++.+++.+||+||+++|
T Consensus 225 ~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~----~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 225 GF-SPNLFEELGFDYIGPIDGHDLEELIE----VLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp -----CCCHHCT-EEEEEEETT-HHHHHH----HHHHHCCSSSEEEEEEE-
T ss_pred hh-hHHHHHHcCCeEEeccCCCCHHHHHH----HHHHHhcCCCCEEEEEeC
Confidence 01 1145677899988 899999988877 455567789999999987
No 52
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.75 E-value=1e-17 Score=154.32 Aligned_cols=118 Identities=26% Similarity=0.237 Sum_probs=91.6
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
...+++||+++|.|+|+++| .+++.||+++|||++++.. +++|.+|.++++|+++||.||+ +++...
T Consensus 47 ~~~~g~mG~gl~~AiGa~la-----------~p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~-~~g~~~ 113 (178)
T cd02008 47 IDTCTCMGASIGVAIGMAKA-----------SEDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNR-TTAMTG 113 (178)
T ss_pred ccccccCccHHHHHhhHHhh-----------CCCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCc-ceeccC
Confidence 34689999999999999999 6788999999999997632 6999999999999888888776 333221
Q ss_pred ccc-----------ccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 264 LRA-----------TSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 264 ~~~-----------~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
..+ ...+|+.+++++||+++++| +..|..++.+++++| .+.++|+||+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a----~~~~gp~lI~v~~ 176 (178)
T cd02008 114 GQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEA----LAVPGVSVIIAKR 176 (178)
T ss_pred CCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHH----HhCCCCEEEEEeC
Confidence 111 02478999999999999999 556666555655544 4568999999964
No 53
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.75 E-value=7.3e-18 Score=155.24 Aligned_cols=118 Identities=26% Similarity=0.350 Sum_probs=94.0
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.+..|+||+++|.|+|+++| .+++.|||++|||+++++ ..+|.++.++++|+++||.||+ |++...
T Consensus 47 ~~~~g~mG~~~~~aiGa~~a-----------~~~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 47 SGLLATMGNGLPGAIAAKLA-----------YPDRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKW 113 (178)
T ss_pred CCCCchhhhHHHHHHHHHHh-----------CCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence 45679999999999999999 678899999999999998 6779999999999999999885 655221
Q ss_pred c---------cccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 H---------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~---------~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. ......+|+.+++++||+++++|+. +.++.+ +++.+++.++|+|||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~----~l~~a~~~~~p~liev~~~~ 174 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVED--PDELEA----ALDEALAADGPVVIDVVTDP 174 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCC--HHHHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 1 0011347899999999999999974 456555 55555667899999998854
No 54
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.75 E-value=4.6e-17 Score=170.21 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=169.2
Q ss_pred cccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--CCc
Q 014288 64 VVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 140 (427)
Q Consensus 64 ~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~yR 140 (427)
+++...--.+.+.++.++|.++-.. +|.+ +.+ .-.+-.|++.++.|--.+.+++..+++ |.|.++- .|+
T Consensus 4 ~L~~i~~P~dLk~ls~~eL~~La~E---iR~~---li~--~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQ 75 (627)
T COG1154 4 LLDKINSPADLKKLSIEELPQLADE---IREF---LLE--VVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQ 75 (627)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHHH---HHHH---HHH--HhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcc
Confidence 4455555556678999999888766 4433 112 233456898899999999999999998 6886654 899
Q ss_pred chHHHHhcCCCHHHHHHHHhcc--cCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 141 DHVHALSKGVPARAVMSELFGK--ATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 141 ~~~~~La~g~~~~~~~~el~g~--~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
.+.|.|..|.. +-|..+... .+|..+ +..|- +-.. ..|+-+.++++|+|+|.|..++ +.++
T Consensus 76 aYpHKiLTGR~--e~f~tlRq~~GlsGf~~-r~ESe------~D~f-~~GHsSTSiSaalG~A~A~~~~-------g~~~ 138 (627)
T COG1154 76 AYPHKILTGRR--EQFDTLRQKDGLSGFPK-REESE------HDWF-GVGHSSTSISAALGMAKARDLK-------GEDR 138 (627)
T ss_pred cchhHHhcCch--hhcchhhhcCCCCCCCC-cccCC------Cccc-ccCchHHHHHHHhhHHHHHHhc-------CCCC
Confidence 99999998864 333333221 111111 11111 1111 3567788999999999998776 5788
Q ss_pred eEEEEeCCCcccCccHHHHHHHHH-HcCCCeEEEEEcCCccccccccccc-------c----------------------
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRAT-------S---------------------- 268 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvi~VV~NN~y~is~~~~~~~-------~---------------------- 268 (427)
.||+++|||++.-|+.+|+||-|+ ..+-|+|+|++||+.+|+-+...-. .
T Consensus 139 ~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~ 218 (627)
T COG1154 139 NVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPL 218 (627)
T ss_pred cEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHH
Confidence 999999999999999999999998 5567899999999988876532100 0
Q ss_pred ------Cch-------hhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 269 ------DPQ-------IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 269 ------~~d-------~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
..+ ...+++.+|+.++ .|||+|++++..++ +.++..++|+||+++|.++.|-..+
T Consensus 219 ~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~L----k~~kd~~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 219 KRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTL----KNAKDLKGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHH----HHHhcCCCCEEEEEEecCCCCCChh
Confidence 000 1126778899988 89999999888755 5567789999999999999997655
No 55
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.73 E-value=4.8e-17 Score=150.20 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=90.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCC-CeEEEEEc-CCcccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVEN-NLWAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-Pvi~VV~N-N~y~is~~~~ 264 (427)
.|+||+++|.|+|+++| .+ +.|||++|||+++++ .++|.++.++++ |+++||.| |+|++.....
T Consensus 41 ~g~mG~~lp~AiGaala-----------~~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~ 106 (179)
T cd03372 41 LGSMGLASSIGLGLALA-----------QP-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQP 106 (179)
T ss_pred ccchhhHHHHHHHHHhc-----------CC-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCC
Confidence 79999999999999999 45 789999999999887 789999999995 67666555 5666543221
Q ss_pred ccc-cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 014288 265 RAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323 (427)
Q Consensus 265 ~~~-~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 323 (427)
... ..+++.++|++||+++.+|++ ++.++.++++++ + ++|++||+.|.+..+
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a----~--~gp~lIev~~~~~~~ 159 (179)
T cd03372 107 THAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQA----L--DGPSFIHVKIKPGNT 159 (179)
T ss_pred CCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHh----c--CCCEEEEEEEcCCCC
Confidence 111 257899999999999999986 677776655544 4 689999999965443
No 56
>PRK06163 hypothetical protein; Provisional
Probab=99.73 E-value=2.8e-17 Score=154.56 Aligned_cols=131 Identities=19% Similarity=0.278 Sum_probs=98.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHc-CCCeEEEEEcCC-cccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LPvi~VV~NN~-y~is~~~~ 264 (427)
+|+||+++|.|+|+++| .+++.|||++|||+++|. .++|.+++++ ++|+++||.||+ |++.....
T Consensus 56 ~GsMG~glpaAiGaalA-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~ 122 (202)
T PRK06163 56 LGSMGLAFPIALGVALA-----------QPKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQP 122 (202)
T ss_pred ecccccHHHHHHHHHHh-----------CCCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCcc
Confidence 78999999999999999 688999999999999987 7899999887 689999999885 55421111
Q ss_pred -ccccCchhhcccccCCCc-EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHH
Q 014288 265 -RATSDPQIYKKGPAFGMP-GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAR 340 (427)
Q Consensus 265 -~~~~~~d~~~~a~a~G~~-~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~ 340 (427)
.....+|+.++|++||++ +++|+ ++.++..+++++ .+.++|+|||+++.+...-+ ...|++.|.+.
T Consensus 123 ~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a----~~~~~p~lIeV~i~~~~~~~----~~~~~~~~~~~ 190 (202)
T PRK06163 123 TLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQA----LSGPGPSFIAVRIDDKPGVG----TTERDPAQIRE 190 (202)
T ss_pred CCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecCCCCCC----CCCCCHHHHHH
Confidence 111347899999999998 67886 566776666555 45689999999986432211 22467776653
No 57
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.72 E-value=5.3e-18 Score=152.09 Aligned_cols=115 Identities=33% Similarity=0.512 Sum_probs=95.0
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
....+.||+++|.|+|+++| .|++.|||++|||++.+. ..+|.++.++++|+++||.||+ +++...
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~-~~~~~~ 89 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALA-----------RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNG-GYGMTG 89 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESS-BSHHHH
T ss_pred CCCccccCCHHHhhhHHHhh-----------cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCC-cceEec
Confidence 45789999999999999999 789999999999999887 8899999999999988888886 333221
Q ss_pred cc---------------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 264 LR---------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 264 ~~---------------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
.. ....+|+.+++++||+++.+|+..|++++.+++++|+ +.+||+||||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred cccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 10 1345789999999999999999888888887666554 6789999997
No 58
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.72 E-value=1.8e-17 Score=178.90 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=98.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.||+++|||+|+|+ .++|.||.++++|+++||.||+ ++++..
T Consensus 414 ~~~~gsmG~glpaaiGa~lA-----------~pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~-~yg~i~ 479 (588)
T TIGR01504 414 CGQAGPLGWTIPAALGVCAA-----------DPKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNA-YLGLIR 479 (588)
T ss_pred CCccccccchHhHHHhhhhh-----------CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHH
Confidence 45679999999999999999 689999999999999998 8999999999999998888886 443322
Q ss_pred cccc----------------------cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRAT----------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~~----------------------~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..|. ..+|+.++|++||+++.+|+ ++.++.+++++|++...+.++|+|||+.+.+
T Consensus 480 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 480 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 1110 14789999999999999996 5667777777776544346899999999843
No 59
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.72 E-value=3.2e-17 Score=151.83 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=91.8
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcC-Ccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN-~y~is~~ 262 (427)
.+.+++||+++|.|+|+++| .+++.|||++|||+++++ ..+|.+++++++|+++||.|| +|++...
T Consensus 46 ~~~~g~mG~~l~~aiGaala-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~ivV~nN~~~~~~~~ 112 (183)
T cd02005 46 QPLWGSIGYSVPAALGAALA-----------APDRRVILLVGDGSFQMT--VQELSTMIRYGLNPIIFLINNDGYTIERA 112 (183)
T ss_pred ccchhhHhhhHHHHHHHHHh-----------CCCCeEEEEECCchhhcc--HHHHHHHHHhCCCCEEEEEECCCcEEEEE
Confidence 35789999999999999999 678899999999999886 567999999999977776665 5554221
Q ss_pred ccc------cccCchhhcccccCC----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HLR------ATSDPQIYKKGPAFG----MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~~------~~~~~d~~~~a~a~G----~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.+. ....+|+.++|++|| +++++|+ ++.++.++++++++ ..++|+|||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 113 IHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred eccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 111 112478999999999 6888885 56677676665543 16799999999854
No 60
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.71 E-value=3e-17 Score=175.32 Aligned_cols=120 Identities=29% Similarity=0.391 Sum_probs=100.0
Q ss_pred cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccc
Q 014288 182 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 261 (427)
Q Consensus 182 ~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~ 261 (427)
..+++.|+||+++|.|+|+++| .|++.|||+.|||+|+|. .++|.||.++++|+++||.||+ ++++
T Consensus 402 ~~s~~~GtMG~glPaAIGAkla-----------~P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~-~~g~ 467 (550)
T COG0028 402 LTSGGLGTMGFGLPAAIGAKLA-----------APDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNG-GYGM 467 (550)
T ss_pred EcCCCCccccchHHHHHHHHhh-----------CCCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECC-cccc
Confidence 3457899999999999999999 789999999999999998 9999999999999999999998 5555
Q ss_pred ccccccc-----------Cch-hhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 262 SHLRATS-----------DPQ-IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 262 ~~~~~~~-----------~~d-~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
....|.. ... |.++|++||+++++|+ ++.++.+ +++++.+.++|+|||+.+.+.
T Consensus 468 v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~----al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 468 VRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEE----ALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred chHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHH----HHHHHHhCCCCEEEEEEecCc
Confidence 5433321 112 9999999999999998 5666666 555566788999999998765
No 61
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.71 E-value=1.8e-17 Score=152.40 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=90.6
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
..+.+.||+++|.|+|+++| . ++.|||++|||++++. .++|.+|.++++|+++||.||+ +++...
T Consensus 47 ~~g~g~mG~~l~~aiGa~la-----------~-~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~-~~g~~~ 111 (175)
T cd02009 47 NRGASGIDGTLSTALGIALA-----------T-DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNN-GGGIFS 111 (175)
T ss_pred cCCccchhhHHHHHHHHHhc-----------C-CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECC-CCchhe
Confidence 34568899999999999999 4 7789999999999987 7999999999999988888886 333211
Q ss_pred ccc-----------c---cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 264 LRA-----------T---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 264 ~~~-----------~---~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
..+ . ..+|+.++|++||+++++|+ ++.++.++++++ .+.++|+|||+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~lIev~v 174 (175)
T cd02009 112 LLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESA----LAQDGPHVIEVKT 174 (175)
T ss_pred eccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHH----HhCCCCEEEEEeC
Confidence 100 0 25789999999999999997 566766655555 4568999999975
No 62
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.70 E-value=6.8e-17 Score=150.39 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=92.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCC-CeEEEEEcCC-cccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-Pvi~VV~NN~-y~is~~~~ 264 (427)
+|+||+++|.|+|+++| .+++.|||++|||++++. .++|.+++++++ |+++||.||+ |++.....
T Consensus 47 ~g~mG~~lpaAiGaala-----------~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~ 113 (188)
T cd03371 47 VGSMGHASQIALGIALA-----------RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQP 113 (188)
T ss_pred cCccccHHHHHHHHHHh-----------CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcC
Confidence 38999999999999999 678899999999999886 789999999997 6888888776 44321111
Q ss_pred ccccCchhhcccccCCCcE-EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 014288 265 RATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323 (427)
Q Consensus 265 ~~~~~~d~~~~a~a~G~~~-~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 323 (427)
.....+|+.++|++||+++ .+|+ ++.++.++++++ .+.++|+|||+.+.+..+
T Consensus 114 ~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a----~~~~~p~lIev~~~~~~~ 167 (188)
T cd03371 114 TVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKA----LAADGPAFIEVKVRPGSR 167 (188)
T ss_pred CCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHH----HhCCCCEEEEEEecCCCC
Confidence 1123479999999999997 5786 667777766555 456799999999966544
No 63
>PRK12474 hypothetical protein; Provisional
Probab=99.70 E-value=7e-17 Score=171.87 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=91.9
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 264 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~ 264 (427)
+..|+||+++|.|+|+++| .|++.|||++|||+++|. .++|.||.+++||+++||.||+ +++....
T Consensus 386 ~~~gsmG~glpaAiGa~lA-----------~p~r~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~-~y~~i~~ 451 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVA-----------APDRKVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANR-SYAILNG 451 (518)
T ss_pred cCCCccCccHHHHHHHHHH-----------CCCCcEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCC-cchHHHH
Confidence 3459999999999999999 789999999999999998 8999999999999999999886 3433211
Q ss_pred c-------------------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 265 R-------------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 265 ~-------------------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
. ..+++|+.++|++||+++.+|+. +.++..++++| ++.++|+|||+.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~--~~eL~~al~~a----~~~~~p~liev~~ 518 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATT--AEEFSAQYAAA----MAQRGPRLIEAMI 518 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHH----HcCCCCEEEEEEC
Confidence 0 01135899999999999999974 55666655554 5678999999964
No 64
>PRK07586 hypothetical protein; Validated
Probab=99.70 E-value=4.5e-17 Score=173.03 Aligned_cols=114 Identities=26% Similarity=0.286 Sum_probs=90.6
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 264 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~ 264 (427)
+..|+||+++|.|+|+++| .+++.|||++|||++++. .++|.+|.+++||+++||.||+ +++....
T Consensus 382 ~~~g~mG~~lpaaiGa~lA-----------~p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~-~y~~~~~ 447 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVA-----------CPDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANR-AYAILRG 447 (514)
T ss_pred cCCcccccHHHHHHHHHHh-----------CCCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCc-hhHHHHH
Confidence 3448999999999999999 689999999999999997 8999999999999888888776 3332211
Q ss_pred ------------------c-cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 265 ------------------R-ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 265 ------------------~-~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
. ..+.+|+.++|++||+++++|+ ++.++.++++ ++++.++|+|||+.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~----~a~~~~~p~liev~~ 514 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALA----AALAEPGPHLIEAVV 514 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHH----HHHcCCCCEEEEEEC
Confidence 0 0124689999999999999997 4556656544 455668999999963
No 65
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.70 E-value=5.4e-17 Score=146.82 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=89.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHc-CCCeEEEEEcCC-cccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LPvi~VV~NN~-y~is~~~~ 264 (427)
+|+||+++|.|+|+++| .+ +.|||++|||++++. .++|.++.++ ++|+++||.||+ |++.....
T Consensus 41 ~gsmG~~lp~AiGa~~a-----------~~-~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~ 106 (157)
T cd02001 41 LGSMGLAGSIGLGLALG-----------LS-RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQP 106 (157)
T ss_pred ecchhhHHHHHHHHHhc-----------CC-CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcC
Confidence 79999999999999998 33 789999999999887 6889999999 599988887775 44322111
Q ss_pred ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 265 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 265 ~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
.....+|+.++|++||+++++|+ ++.++.+++++++ +.++|++||+.+.
T Consensus 107 ~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 107 TPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred CCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 11125799999999999999986 5677777666554 4689999999874
No 66
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.70 E-value=4.2e-16 Score=168.48 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=167.8
Q ss_pred ccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CeecccccCCCChHHHHHHHHHhcC-CCCEEEc--C
Q 014288 63 PVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYR-GKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--T 138 (427)
Q Consensus 63 ~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~-gk~~G~~~~~~GqEa~~vg~~~~L~-~~D~v~~--~ 138 (427)
+.++...--.+.+.++.++|.+|-.. +|.+ -...- .+-.|++.++.|--.+.+|+..+++ |.|.++- .
T Consensus 77 ~~L~~i~~P~dlk~L~~~eL~~La~E---iR~~-----li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvg 148 (701)
T PLN02225 77 PILDSIETPLQLKNLSVKELKLLADE---IRTE-----LHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAV 148 (701)
T ss_pred chhhhcCCHHHHhhCCHHHHHHHHHH---HHHH-----HHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccc
Confidence 34666665566678999999888776 5544 11223 3457898899999999999999998 6887664 8
Q ss_pred CcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 139 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 139 yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
|+.+.|.|..|..- + |. . +. ..|-.|.......++-.+ +.|+-+.++++|+|+|.|..++ +.++
T Consensus 149 HQ~Y~HKiLTGR~~-~-f~-~--Rq---~~GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~-------g~~~ 212 (701)
T PLN02225 149 EQTYAHKVLTRRWS-A-IP-S--RQ---KNGISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIK-------GKRD 212 (701)
T ss_pred cccchhhHhcCChh-h-cC-c--cc---cCCcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhc-------CCCC
Confidence 99999999988541 1 11 1 11 112222211111122222 4578888999999999998877 4678
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccc--------cccc------------------------
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS--------HLRA------------------------ 266 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~--------~~~~------------------------ 266 (427)
.||+++|||++.-|+.+|+||-|+..+-++|+|++||+.+|+-. ...-
T Consensus 213 ~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~ 292 (701)
T PLN02225 213 RVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMT 292 (701)
T ss_pred cEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999888876 1000
Q ss_pred --cc-------------Cch-h---h-cccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccC--CCEEEEEEEecCCC
Q 014288 267 --TS-------------DPQ-I---Y-KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGE--GPTLVECETYRFRG 323 (427)
Q Consensus 267 --~~-------------~~d-~---~-~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~--gP~lIe~~t~R~~g 323 (427)
.+ ... + . .+++.+|+.++ .|||+|+.++.++++.+ +..+ +|+||+++|.+++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~----k~~~~~~PvlvHv~T~KGkd 368 (701)
T PLN02225 293 KRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREV----SSLDSMGPVLVHVITEENRD 368 (701)
T ss_pred HhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHH----HcCCCCCCEEEEEEecCCCC
Confidence 00 000 0 1 46688999998 89999999988866544 4554 99999999998873
No 67
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.69 E-value=1.9e-16 Score=147.93 Aligned_cols=120 Identities=24% Similarity=0.249 Sum_probs=93.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc-ccCccHHHHHHHHHHcCCCeEEEEEcCCcccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~ 262 (427)
....++||+++|.|+|+++| .|++.||++.|||+ ++++ .++|.+|.++++|+++||.||+ +++..
T Consensus 47 ~~~~g~mG~glpaAiGa~la-----------~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~-~yg~~ 112 (193)
T cd03375 47 YGFHTLHGRALAVATGVKLA-----------NPDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQ-IYGLT 112 (193)
T ss_pred cchhhhhccHHHHHHHHHHh-----------CCCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCc-ccccC
Confidence 33458999999999999999 78999999999999 5787 8999999999999999998886 34332
Q ss_pred cccc------------------ccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 263 HLRA------------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 263 ~~~~------------------~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
...+ ...+|+.+++++||++++ ++.-.++.++.+++++|+ +.++|++||+.+.-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al----~~~gp~vIev~~~C~ 186 (193)
T cd03375 113 KGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAI----QHKGFSFVEVLSPCP 186 (193)
T ss_pred CCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHH----hcCCCEEEEEECCCC
Confidence 2111 013688999999999985 233456777777666665 468999999976543
No 68
>PRK07524 hypothetical protein; Provisional
Probab=99.69 E-value=6.1e-17 Score=172.90 Aligned_cols=121 Identities=24% Similarity=0.323 Sum_probs=98.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcC-Cccccc-
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGM- 261 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN-~y~is~- 261 (427)
.++.|.||+++|.|+|+++| .+++.|||++|||+++++ .++|.+|+++++|+++||.|| +|++..
T Consensus 403 ~~~~g~mG~~lp~aiGa~lA-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 403 STGYGTLGYGLPAAIGAALG-----------APERPVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRR 469 (535)
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 45679999999999999999 689999999999999987 788999999999999999988 554321
Q ss_pred --------cccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 014288 262 --------SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323 (427)
Q Consensus 262 --------~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 323 (427)
+.......+|+.++|++||+++++|+ ++.++.++++ .+++.++|+|||++++|+++
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~----~a~~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALR----AAFARPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHH----HHHhCCCCEEEEEECCcccc
Confidence 00011235789999999999999996 5666666555 44567899999999999876
No 69
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.69 E-value=6.4e-17 Score=174.69 Aligned_cols=123 Identities=22% Similarity=0.268 Sum_probs=97.4
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+++++ ..+|.+|.++++|+++||.||+ |++...
T Consensus 431 ~~~~g~mG~glp~aiGa~la-----------~p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~ 497 (588)
T PRK07525 431 PGSFGNCGYAFPAIIGAKIA-----------CPDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKK 497 (588)
T ss_pred cccccccccHHHHHHHHHHh-----------CCCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHH
Confidence 35679999999999999999 688999999999999998 7899999999999988888875 443110
Q ss_pred cc-----------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 014288 263 HL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 322 (427)
Q Consensus 263 ~~-----------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 322 (427)
.+ .....+|+.++|++||+++++|+ ++.++..+++++++.. +.++|+|||+.+.+-.
T Consensus 498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 00 00124699999999999999996 5668878777776532 2368999999996544
No 70
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=5.7e-16 Score=161.25 Aligned_cols=135 Identities=27% Similarity=0.377 Sum_probs=114.3
Q ss_pred cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccc
Q 014288 182 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 260 (427)
Q Consensus 182 ~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is 260 (427)
.+.-++|++|++++.|+|+|++.|+.+ ..+..|+|++|||++++|.+||++++|+.|+|. +|+|.+||+.+++
T Consensus 112 ~v~v~TG~lgQgis~a~GmA~~~k~~~------k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~ 185 (632)
T KOG0523|consen 112 GVEVATGPLGQGISNAVGMAYAGKHLG------KASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISID 185 (632)
T ss_pred CceeccCCccchHHHHHHHHHHHHhhc------cccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCC
Confidence 344567999999999999999999885 247889999999999999999999999999999 7888889988888
Q ss_pred ccccccccCchhhc-ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 014288 261 MSHLRATSDPQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326 (427)
Q Consensus 261 ~~~~~~~~~~d~~~-~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 326 (427)
.++.... ..++.+ +.++|||.++.||+.|++++.+++..|. ...++|++|-++|+.+.|-..
T Consensus 186 g~t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~~ 248 (632)
T KOG0523|consen 186 GATSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSPY 248 (632)
T ss_pred CCCcccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCccc
Confidence 8776554 566777 9999999999999999888777666654 235789999999999988543
No 71
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.69 E-value=8.9e-17 Score=173.64 Aligned_cols=122 Identities=23% Similarity=0.190 Sum_probs=97.9
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ |++-..
T Consensus 415 ~~~~G~mG~glpaAiGa~la-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~ 481 (591)
T PRK11269 415 CGQAGPLGWTIPAALGVRAA-----------DPDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQ 481 (591)
T ss_pred CCccccccchhhhHHhhhhh-----------CCCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 35679999999999999999 688999999999999997 7999999999999999999887 443110
Q ss_pred ccc----c----c------------cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HLR----A----T------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~~----~----~------------~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.+. . . .++||.++|++||+++.+|+ +++++.+++++|++...+.+||+|||+++.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 482 AQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 000 0 0 23789999999999999996 5668877777776544356899999999854
No 72
>PRK06154 hypothetical protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=171.64 Aligned_cols=120 Identities=21% Similarity=0.255 Sum_probs=97.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+.+|+||+++|.|+|+++| .+++.|||++|||+|+|. .++|.||++++||+++||.||+ +++...
T Consensus 427 ~~~~gsmG~glpaaiGa~la-----------~p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~yg~~~ 492 (565)
T PRK06154 427 WGKTTQLGYGLGLAMGAKLA-----------RPDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNF-SMGGYD 492 (565)
T ss_pred cCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccceee
Confidence 34679999999999999999 789999999999999998 7999999999999999999886 444322
Q ss_pred ccc----------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~----------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..+ ...+||.++|++||+++++|+ ++.++.+++++|++.. +.++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~-~~~~p~lIev~v~~ 556 (565)
T PRK06154 493 KVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKV-KEGTPALLEVITSE 556 (565)
T ss_pred hhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhc-cCCCeEEEEEEeCh
Confidence 111 014689999999999999997 5668777777776543 24689999998743
No 73
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=1e-16 Score=172.45 Aligned_cols=151 Identities=21% Similarity=0.362 Sum_probs=109.0
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCcc-----cc--cc--CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMHM-----FS--KE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H~-----~~--~~--~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
+++..++.++....++.. ..++|+... +. .+ +...+++|+||+++|.|+|+++| .+++
T Consensus 373 l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA-----------~p~~ 441 (570)
T PRK06725 373 LKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA-----------KEEE 441 (570)
T ss_pred cCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh-----------cCCC
Confidence 556666666666544332 233333211 11 11 12245679999999999999999 6889
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccc------------cccCchhhcccccCCCcEEEE
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHV 286 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~------------~~~~~d~~~~a~a~G~~~~~V 286 (427)
.|||++|||+++++ .++|.+|.++++|+++||.||+ +++..... ...++|+.+++++||+++.+|
T Consensus 442 ~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (570)
T PRK06725 442 LVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNK-FLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA 518 (570)
T ss_pred eEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 99999999999887 7899999999999999999987 34332211 112578999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 287 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 287 dg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
+ ++.++.++ ++++++.++|+|||+.+.+
T Consensus 519 ~--~~~~l~~a----l~~a~~~~~p~liev~id~ 546 (570)
T PRK06725 519 T--NSTEAKQV----MLEAFAHEGPVVVDFCVEE 546 (570)
T ss_pred C--CHHHHHHH----HHHHHhCCCCEEEEEEeCC
Confidence 5 56666554 4555567899999999854
No 74
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.68 E-value=8.9e-17 Score=174.45 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=110.1
Q ss_pred CCHHHHHHHHhcccCCCc-cCCCCCCccc------cc--cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceE
Q 014288 150 VPARAVMSELFGKATGCC-RGQGGSMHMF------SK--EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 220 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~-~G~ggs~H~~------~~--~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~v 220 (427)
+.+..++.++....++.. ..+.|...+| .. .....+++|+||+++|.|+|+++| .|++.|
T Consensus 387 l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA-----------~p~r~V 455 (616)
T PRK07418 387 IYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVA-----------LPDEEV 455 (616)
T ss_pred cCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHh-----------CCCCcE
Confidence 566777777766554321 2344432111 11 122345789999999999999999 789999
Q ss_pred EEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccc--------------cCchhhcccccCCCcEEEE
Q 014288 221 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT--------------SDPQIYKKGPAFGMPGFHV 286 (427)
Q Consensus 221 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~--------------~~~d~~~~a~a~G~~~~~V 286 (427)
||++|||+|+|. .++|.+|++++||+++||.||+ +++.....|. ..+|+.++|++||+++++|
T Consensus 456 v~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V 532 (616)
T PRK07418 456 ICIAGDASFLMN--IQELGTLAQYGINVKTVIINNG-WQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVI 532 (616)
T ss_pred EEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEe
Confidence 999999999987 7899999999999999999887 4443221111 2478999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 287 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 287 dg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
+ +++++.+++++ +.+.++|+|||+++.+
T Consensus 533 ~--~~~el~~al~~----a~~~~~p~lIeV~i~~ 560 (616)
T PRK07418 533 S--ERDQLKDAIAE----ALAHDGPVLIDVHVRR 560 (616)
T ss_pred C--CHHHHHHHHHH----HHhCCCCEEEEEEecC
Confidence 7 55666665554 4456889999999853
No 75
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.68 E-value=1.9e-16 Score=169.01 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=107.9
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCc-----ccc---ccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCce
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMH-----MFS---KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 219 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H-----~~~---~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~ 219 (427)
+++..++.++....++.. ..+.|+.. ++. +...+.+..|+||+++|.|+|+++| .+++.
T Consensus 359 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~~~ 427 (530)
T PRK07092 359 LSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALA-----------QPGRR 427 (530)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHh-----------CCCCe
Confidence 456666666666554432 22333221 111 1122334468999999999999999 67889
Q ss_pred EEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc----------ccccccCchhhcccccCCCcEEEEeC
Q 014288 220 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS----------HLRATSDPQIYKKGPAFGMPGFHVDG 288 (427)
Q Consensus 220 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~----------~~~~~~~~d~~~~a~a~G~~~~~Vdg 288 (427)
|||++|||+++++ .++|++|.++++|+++||.||+ |++... ........|+.+++++||+++++|+.
T Consensus 428 vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~ 505 (530)
T PRK07092 428 VIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVSD 505 (530)
T ss_pred EEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeCC
Confidence 9999999999998 7999999999999999999887 665211 11112357899999999999999984
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 289 MDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 289 ~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+.++.+ |++++++.++|+|||+.+
T Consensus 506 --~~~l~~----al~~a~~~~~p~liev~~ 529 (530)
T PRK07092 506 --AAELAD----ALARALAADGPVLVEVEV 529 (530)
T ss_pred --HHHHHH----HHHHHHhCCCCEEEEEEc
Confidence 445544 555666778999999976
No 76
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.68 E-value=1.3e-16 Score=171.96 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=112.4
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCc-----ccc--ccCc--ccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMH-----MFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H-----~~~--~~~~--~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
+++..++.++....+..+ ..+.|+.+ ++. .+.. ..+++|+||+++|.|+|+++| .+++
T Consensus 381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~~ 449 (579)
T TIGR03457 381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA-----------APDR 449 (579)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhh-----------CCCC
Confidence 566667776666554332 23334321 111 1122 235679999999999999999 6889
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccc------------c-cCchhhcccccCCCcEEE
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGFH 285 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~------------~-~~~d~~~~a~a~G~~~~~ 285 (427)
.|||++|||+|+|. .++|.+|++++||+++||.||+ +++.....+ . ..+|+.++|++||+++++
T Consensus 450 ~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~ 526 (579)
T TIGR03457 450 PVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNR-QWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVV 526 (579)
T ss_pred cEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-chHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999997 7999999999999988888876 444322110 1 125999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 014288 286 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 322 (427)
Q Consensus 286 Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 322 (427)
|+ +++++.+++++|++.. +.++|+|||+.+.+..
T Consensus 527 v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 527 VD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTREL 560 (579)
T ss_pred EC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCCCc
Confidence 96 5678888777776533 3578999999986533
No 77
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.68 E-value=1.4e-16 Score=147.51 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=89.6
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcC-CCeEEEEEcCC-cccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVENNL-WAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LPvi~VV~NN~-y~is~~~~ 264 (427)
.|+||+++|.|+|+++| . ++.|||++|||+++++ .++|.++++++ +|+++||.||+ |++.....
T Consensus 41 ~gsmG~~lpaAiGa~la-----------~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~ 106 (181)
T TIGR03846 41 LGSMGLASSIGLGLALA-----------T-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQP 106 (181)
T ss_pred ccccccHHHHHHHHHHc-----------C-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcC
Confidence 78999999999999999 5 7889999999999987 68999999999 59999998886 44432111
Q ss_pred ccc-cCchhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 265 RAT-SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 265 ~~~-~~~d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
... ..+|+.++|++||+++.+ |+ ++.++.+++ + +.+.++|+|||+.+.+
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~~v~--~~~~l~~al----~-a~~~~~p~li~v~~~~ 157 (181)
T TIGR03846 107 TPASRRTDLELVAKAAGIRNVEKVA--DEEELRDAL----K-ALAMKGPTFIHVKVKP 157 (181)
T ss_pred CCCCCCCCHHHHHHHCCCCeEEEeC--CHHHHHHHH----H-HHcCCCCEEEEEEeCC
Confidence 111 257899999999999998 75 556666655 3 4456899999998853
No 78
>PRK05858 hypothetical protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=169.94 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=95.3
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+..|+||+++|.|+|+++| .+++.|||++|||++++. .++|.+|.++++|+++||.||+ +++...
T Consensus 403 ~~~~gsmG~~lp~aiGa~la-----------~p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~ 468 (542)
T PRK05858 403 PGPFGCLGTGPGYALAARLA-----------RPSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNG-IWGLEK 468 (542)
T ss_pred CCCccccccchhHHHHHHHh-----------CCCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCC-chhhHH
Confidence 34679999999999999999 688999999999999998 8999999999999999988886 444332
Q ss_pred ccc------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..+ ..++||.++|++||+++.+|+. ++++.+++++| .+.++|+|||+.+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a----~~~~~p~lIev~~~~ 531 (542)
T PRK05858 469 HPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVTV--PAELGPALERA----FASGVPYLVNVLTDP 531 (542)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHH----HhCCCcEEEEEEECC
Confidence 111 1357999999999999999974 55666655555 457899999999853
No 79
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=1.1e-16 Score=173.13 Aligned_cols=117 Identities=21% Similarity=0.414 Sum_probs=95.6
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .|++.|||++|||+|++. .++|.||+++++|+++||.||+ +++...
T Consensus 426 ~~~~gsmG~glpaaiGa~lA-----------~p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~-~y~~i~ 491 (595)
T PRK09107 426 SGGLGTMGYGLPAALGVQIA-----------HPDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQ-YMGMVR 491 (595)
T ss_pred CCCchhhhhhHHHHHHHHHh-----------CCCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHH
Confidence 45679999999999999999 789999999999999997 7999999999999999999987 454332
Q ss_pred ccc-------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA-------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~-------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..| ...+|+.++|++||+++++|+ ++.++.+++++| .+.++|+|||+.+.+
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~lIeV~i~~ 555 (595)
T PRK09107 492 QWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEM----IDVDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 110 024789999999999999996 455766655554 456899999999864
No 80
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=1.2e-16 Score=171.99 Aligned_cols=152 Identities=22% Similarity=0.378 Sum_probs=109.0
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCcc-----c--cccCc--ccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMHM-----F--SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H~-----~--~~~~~--~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
+++..++.++....++.. ..++|.... + ..+.. ..+++|+||+++|.|+|+++| .+++
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 440 (572)
T PRK08979 372 IKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA-----------MPDE 440 (572)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh-----------CCCC
Confidence 566667777766554432 233333111 1 11122 245679999999999999999 6889
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccc-------------ccCchhhcccccCCCcEEE
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGFH 285 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~-------------~~~~d~~~~a~a~G~~~~~ 285 (427)
.|||++|||+|+|. .++|.+|.++++|+++||.||+ +++.....| ...+||.++|++||+++.+
T Consensus 441 ~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 517 (572)
T PRK08979 441 TVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNR-FLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIR 517 (572)
T ss_pred eEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCC-ccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999998 7999999999999999888886 444322111 1247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 286 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 286 Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
|+ ++.++..++++|++ ..++|+|||+.+.+
T Consensus 518 v~--~~~eL~~al~~a~~---~~~~p~lIev~i~~ 547 (572)
T PRK08979 518 IS--DPDELESGLEKALA---MKDRLVFVDINVDE 547 (572)
T ss_pred EC--CHHHHHHHHHHHHh---cCCCcEEEEEEeCC
Confidence 97 45566665555542 13789999998864
No 81
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.68 E-value=2.1e-16 Score=152.00 Aligned_cols=123 Identities=22% Similarity=0.178 Sum_probs=96.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCeEEEEEcCCccccc-
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNLWAIGM- 261 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~- 261 (427)
.+..++||+++|.|+|++++ .|++.|||++|||++ +++ .++|.+|+++++|+++||.||+ ++++
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a-----------~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~-~yg~t 123 (235)
T cd03376 58 FENAAAVASGIEAALKALGR-----------GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNE-AYMNT 123 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc-----------CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCc-ccccC
Confidence 34457999999999999887 688999999999994 788 8999999999999999999997 3332
Q ss_pred -c-ccc--------------------cccCchhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 262 -S-HLR--------------------ATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 262 -~-~~~--------------------~~~~~d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
. ... ....+|+.++|+++|++++. ++..++.++.+++++|+ +.++|+|||+.+
T Consensus 124 g~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~----~~~gP~lIev~~ 199 (235)
T cd03376 124 GIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKAL----SIEGPAYIHILS 199 (235)
T ss_pred CCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 1 000 11336899999999999873 55567888877666654 568999999987
Q ss_pred ecCCCC
Q 014288 319 YRFRGH 324 (427)
Q Consensus 319 ~R~~gH 324 (427)
.-...|
T Consensus 200 ~C~~~~ 205 (235)
T cd03376 200 PCPTGW 205 (235)
T ss_pred CCCCCC
Confidence 655444
No 82
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.68 E-value=1.8e-16 Score=169.45 Aligned_cols=118 Identities=24% Similarity=0.299 Sum_probs=94.8
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.++.++||+++|.|+|+++| .+++.|||++|||+|+|. .++|.+|.++++|+++||.||+ +++...
T Consensus 404 ~~~~g~mG~~lpaaiGa~la-----------~~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~ 469 (539)
T TIGR02418 404 SNGMQTLGVALPWAIGAALV-----------RPNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDN-GYNMVE 469 (539)
T ss_pred CCCccccccHHHHHHHHHHh-----------CCCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECC-cchHHH
Confidence 45679999999999999999 678999999999999997 7999999999999988888876 443322
Q ss_pred ccc-----------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 264 LRA-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 264 ~~~-----------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
..+ ...+|+.++|++||+++.+|+. +.++.+++++ +.+.++|+|||+.+.+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~--~~eL~~al~~----a~~~~~p~lIev~v~~~ 532 (539)
T TIGR02418 470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVES--PDQLEPTLRQ----AMEVEGPVVVDIPVDYS 532 (539)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHH----HHhCCCCEEEEEEecCc
Confidence 110 1357899999999999999974 5566665554 45568999999998543
No 83
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=1.5e-16 Score=171.21 Aligned_cols=154 Identities=23% Similarity=0.378 Sum_probs=112.6
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCcc-----c--cccC--cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMHM-----F--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H~-----~--~~~~--~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
+.+..++.++....++.+ ..+.|.... + ..+. ...+++|+||+++|.|+|+++| .+++
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 440 (574)
T PRK07979 372 IKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA-----------LPEE 440 (574)
T ss_pred cCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh-----------CCCC
Confidence 566777777766554432 233333111 1 1111 2345779999999999999999 6889
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccc-----------c--ccCchhhcccccCCCcEEE
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGFH 285 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~-----------~--~~~~d~~~~a~a~G~~~~~ 285 (427)
.|||++|||+|+|. .++|.+|++++||+++||.||+ +++..... . ...+|+.++|++||+++++
T Consensus 441 ~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~ 517 (574)
T PRK07979 441 TVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNR-YLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQ 517 (574)
T ss_pred eEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCc-hhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEE
Confidence 99999999999998 8999999999999999999886 44432211 0 1247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 286 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 286 Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
|+ ++.++..++++|++..+ .++|+|||+.+.+
T Consensus 518 v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 518 IS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred EC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 96 56677777777665332 3789999999854
No 84
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.67 E-value=2.9e-16 Score=168.96 Aligned_cols=122 Identities=25% Similarity=0.307 Sum_probs=101.5
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcC-Ccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN-~y~is~~ 262 (427)
.+++++||+++|.|+|+++| .|++.|||++|||+++++...++|++|.++++|+++||.|| +|++...
T Consensus 426 ~~~~gsmG~~lp~aiGa~la-----------~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~ 494 (569)
T PRK08327 426 DGSAGGLGWALGAALGAKLA-----------TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKE 494 (569)
T ss_pred CCCCCCCCcchHHHHHHhhc-----------CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchh
Confidence 45689999999999999999 78999999999999999854557999999999999999988 4554210
Q ss_pred c-----------------cccc-cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 263 H-----------------LRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 263 ~-----------------~~~~-~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
. .... ..+|+.+++++||+++.+|+ ++.++.+++++|++.+++++||+|||+.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 495 AVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 0011 35789999999999999997 77899999999988777778999999976
No 85
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=2.6e-16 Score=169.08 Aligned_cols=118 Identities=30% Similarity=0.485 Sum_probs=94.6
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+++|+ ..+|.+|.+++||+|+||.||+ +++...
T Consensus 410 ~~~~g~mG~~l~~aiGa~la-----------~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~~~~i~ 475 (563)
T PRK08527 410 SGGLGTMGYGLPAALGAKLA-----------VPDKVVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNN-FLGMVR 475 (563)
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECC-cchhHH
Confidence 45679999999999999999 678899999999999997 7889999999999999998886 443322
Q ss_pred ccc-------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 264 LRA-------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 264 ~~~-------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
..+ ...+|+.++|++||+++++|+ +++++.+++++ +.+.++|+|||+.+.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~----a~~~~~p~lieV~v~~~ 540 (563)
T PRK08527 476 QWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKE----ALESDKVALIDVKIDRF 540 (563)
T ss_pred HHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHH----HHhCCCCEEEEEEECCc
Confidence 111 124689999999999999997 45566665544 45568999999999753
No 86
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=2.9e-16 Score=169.32 Aligned_cols=116 Identities=28% Similarity=0.352 Sum_probs=95.1
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 264 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~ 264 (427)
+.+|+||+++|.|+|+++| .+++.|||++|||+++++ .++|.+|+++++|+++||.||+ +++....
T Consensus 405 ~~~gsmG~~~paAiGa~la-----------~p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~-~~g~i~~ 470 (578)
T PRK06546 405 FRHGSMANALPHAIGAQLA-----------DPGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNS-TLGMVKL 470 (578)
T ss_pred CCcccccchhHHHHHHHHh-----------CCCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECC-ccccHHH
Confidence 4679999999999999999 788999999999999987 7899999999999999999886 4443211
Q ss_pred -----------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 265 -----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 265 -----------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.....+|+.++|++||+++.+|+ ++.++.++++++ .+.+||+|||+.+.+
T Consensus 471 ~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a----~~~~gp~lIev~~~~ 531 (578)
T PRK06546 471 EMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREA----FAHPGPALVDVVTDP 531 (578)
T ss_pred HHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 01235799999999999999997 566776655555 457899999998854
No 87
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=2.5e-16 Score=170.03 Aligned_cols=118 Identities=21% Similarity=0.381 Sum_probs=95.7
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|+|. .++|.||.++++|+++||.||+ +++...
T Consensus 433 ~~~~gsmG~glpaaiGa~lA-----------~p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~-~~~~i~ 498 (587)
T PRK06965 433 SGGLGTMGVGLPYAMGIKMA-----------HPDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNR-YLGMVR 498 (587)
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECC-cchHHH
Confidence 46779999999999999999 688999999999999998 8999999999999999999887 444322
Q ss_pred ccc-------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA-------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~-------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..| ...+|+.++|++||+++.+|+ ++.++.+++++|++ ..++|+|||+.+.+
T Consensus 499 ~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lieV~i~~ 563 (587)
T PRK06965 499 QWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALR---LKDRTVFLDFQTDP 563 (587)
T ss_pred HHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---cCCCcEEEEEEecc
Confidence 110 024789999999999999996 45677676666653 13689999998853
No 88
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=3e-16 Score=168.96 Aligned_cols=151 Identities=23% Similarity=0.358 Sum_probs=108.8
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCcc-----c--ccc--CcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMHM-----F--SKE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H~-----~--~~~--~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
+++..++.++....++.. ..+.|+... + ..+ ....+++|+||+++|.|+|+++| .+++
T Consensus 374 l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la-----------~p~r 442 (574)
T PRK06466 374 IKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA-----------FPDQ 442 (574)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh-----------CCCC
Confidence 566677777766544332 223332111 1 111 22346779999999999999999 6889
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccc-------------ccCchhhcccccCCCcEEE
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGFH 285 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~-------------~~~~d~~~~a~a~G~~~~~ 285 (427)
.|||++|||+|+|. .++|.+|.++++|+++||.||+ +++.....| ...+|+.++|++||+++.+
T Consensus 443 ~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 519 (574)
T PRK06466 443 DVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNG-ALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIR 519 (574)
T ss_pred eEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999998 8999999999999988888886 333322110 1247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEec
Q 014288 286 VDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR 320 (427)
Q Consensus 286 Vdg~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~R 320 (427)
|+ ++.++.+++++|+ +. ++|+|||+.+.+
T Consensus 520 v~--~~~el~~al~~a~----~~~~~p~lIev~i~~ 549 (574)
T PRK06466 520 IT--DLKDLKPKLEEAF----AMKDRLVFIDIYVDR 549 (574)
T ss_pred EC--CHHHHHHHHHHHH----hcCCCcEEEEEEeCC
Confidence 96 4557666665554 43 799999999864
No 89
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.66 E-value=2.3e-16 Score=168.72 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=108.3
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCcccc------cc-C-cccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCce
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMHMFS------KE-H-NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 219 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H~~~------~~-~-~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~ 219 (427)
+++..++.++....++.+ ..+.|...++. .+ . ...+.+|+||+++|.|+|+++| .+++.
T Consensus 356 l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~~ 424 (539)
T TIGR03393 356 LSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA-----------CPNRR 424 (539)
T ss_pred cCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhc-----------CCCCC
Confidence 667777777766555432 23344322211 11 1 2246679999999999999999 68999
Q ss_pred EEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccc--------cccCchhhcccccCCCc----EEEEe
Q 014288 220 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFGMP----GFHVD 287 (427)
Q Consensus 220 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~--------~~~~~d~~~~a~a~G~~----~~~Vd 287 (427)
|||++|||+++|. .++|.+|+++++|+++||.||+ +++..... ....+|+.+++++||++ +.+|+
T Consensus 425 vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~ 501 (539)
T TIGR03393 425 VILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNE-GYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS 501 (539)
T ss_pred eEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec
Confidence 9999999999997 8999999999999888888876 44332211 12347899999999996 78886
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 288 GMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 288 g~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
. +.++.+ |++++.+.++|+|||+.+.
T Consensus 502 ~--~~el~~----al~~a~~~~~p~liev~i~ 527 (539)
T TIGR03393 502 E--AEQLAD----VLEKVAAHERLSLIEVVLP 527 (539)
T ss_pred c--HHHHHH----HHHHHhccCCeEEEEEEcC
Confidence 4 456655 4455556789999999873
No 90
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.66 E-value=2.3e-16 Score=169.72 Aligned_cols=117 Identities=28% Similarity=0.531 Sum_probs=94.0
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. ..+|++|.++++|+++||.||+ +++...
T Consensus 420 ~~~~g~mG~glpaAiGaala-----------~p~~~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~-~~~~i~ 485 (571)
T PRK07710 420 SGGLGTMGFGLPAAIGAQLA-----------KPDETVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNE-ALGMVR 485 (571)
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECc-hHHHHH
Confidence 45679999999999999999 688999999999999987 6789999999999888888886 333221
Q ss_pred c-------------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 L-------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~-------------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. .....+|+.++|++||+++.+|+.. .++.. |++++++.++|+|||+.+.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~--~el~~----al~~a~~~~~p~lieV~vd~ 549 (571)
T PRK07710 486 QWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDDE--LEAKE----QLQHAIELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECCH--HHHHH----HHHHHHhCCCCEEEEEEecC
Confidence 1 0113478999999999999999754 45544 55566667899999999864
No 91
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=3.7e-16 Score=168.25 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=94.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.++.|+||+++|.|+|+++| .+++.|||++|||+|+|. .++|.+|.++++|+++||.||+ |++...
T Consensus 404 ~~~~G~mG~~lpaAiGa~la-----------~p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~ 470 (574)
T PRK09124 404 SFNHGSMANAMPQALGAQAA-----------HPGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAM 470 (574)
T ss_pred cCCcccccchHHHHHHHHHh-----------CCCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHH
Confidence 35789999999999999999 788999999999999997 7899999999999888888875 544210
Q ss_pred c-----c--c--cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 H-----L--R--ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~-----~--~--~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. . . ....+|+.++|++||+++++|+ ++.++.+++++| .+.++|+|||+.+.+
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a----~~~~~p~lIev~i~~ 531 (574)
T PRK09124 471 EMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRA----FAHDGPALVDVVTAK 531 (574)
T ss_pred HHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 0 0 0 0134689999999999999997 455666655554 456899999998854
No 92
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.65 E-value=3.2e-16 Score=169.50 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=108.2
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCCCccc-----c---c-cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCc
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGSMHMF-----S---K-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 218 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs~H~~-----~---~-~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~ 218 (427)
+++..++.++....+..+ ..+.|....+ . + .....+++|+||+++|.|+|+++| .|++
T Consensus 366 l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la-----------~p~~ 434 (597)
T PRK08273 366 VNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA-----------HPDR 434 (597)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHh-----------CCCC
Confidence 566677777665544332 2333432211 1 1 122346679999999999999999 6889
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHc-----CCCeEEEEEcCCccccccccc--------------cccCchhhcccccC
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNLWAIGMSHLR--------------ATSDPQIYKKGPAF 279 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~-----~LPvi~VV~NN~y~is~~~~~--------------~~~~~d~~~~a~a~ 279 (427)
.|||++|||+|+|.. .++|.||+++ ++|+++||.||+ +++..... ..+.+|+.++|++|
T Consensus 435 ~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~ 512 (597)
T PRK08273 435 PVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNR-DLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELL 512 (597)
T ss_pred cEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCC-cchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHC
Confidence 999999999998851 3899999999 899999999886 33322110 11346899999999
Q ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 280 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 280 G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
|+++++|+ +++++..++++| .+.++|+|||+.+.+
T Consensus 513 G~~~~~v~--~~~eL~~al~~a----~~~~~p~lIeV~~~~ 547 (597)
T PRK08273 513 GLKGIRVD--DPEQLGAAWDEA----LAADRPVVLEVKTDP 547 (597)
T ss_pred CCEEEEEC--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 99999997 455666655554 456899999999854
No 93
>PRK08266 hypothetical protein; Provisional
Probab=99.65 E-value=3.2e-16 Score=167.53 Aligned_cols=122 Identities=29% Similarity=0.369 Sum_probs=97.0
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.+..|+||+++|.|+|++++ .+++.|||++|||+++++ .++|.+|.+++||+++||.||+ |++...
T Consensus 398 ~~~~GsmG~~lp~aiGa~la-----------~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 398 CGYQGTLGYGFPTALGAKVA-----------NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 34579999999999999999 688999999999999998 7999999999999999888885 654221
Q ss_pred ccc----------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 014288 263 HLR----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 324 (427)
Q Consensus 263 ~~~----------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gH 324 (427)
.+. ....+|+.++|++||+++++|+. +.++.+ +++++.+.++|+|||+.++|...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~----al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRA----ALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHH----HHHHHHhCCCcEEEEEEecCCCCc
Confidence 110 01246899999999999999985 446555 444555678999999999877543
No 94
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.65 E-value=4e-16 Score=167.60 Aligned_cols=117 Identities=25% Similarity=0.382 Sum_probs=94.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ +++...
T Consensus 410 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~ 475 (561)
T PRK06048 410 SGGLGTMGYGFPAAIGAKVG-----------KPDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNG-YLGMVR 475 (561)
T ss_pred CCCccccccHHHHHHHHHHh-----------CCCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECC-ccHHHH
Confidence 45669999999999999999 688999999999999998 7999999999999998888886 343321
Q ss_pred cc-----------c--ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LR-----------A--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~-----------~--~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. . ...+|+.++|++||+++++|+. +.++.+++++| .+.++|+|||+.+.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t--~~el~~al~~a----~~~~~p~liev~~~~ 539 (561)
T PRK06048 476 QWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVEK--PSEVRPAIEEA----VASDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 10 1 1357899999999999999974 45666655554 456899999999854
No 95
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.65 E-value=3.6e-16 Score=168.76 Aligned_cols=116 Identities=24% Similarity=0.492 Sum_probs=94.4
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|+++++|+++||.||+ +++...
T Consensus 426 ~~~~g~mG~glpaaiGaala-----------~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~-~y~~i~ 491 (585)
T CHL00099 426 SAGLGTMGYGLPAAIGAQIA-----------HPNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNK-WQGMVR 491 (585)
T ss_pred CccccchhhhHHHHHHHHHh-----------CCCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHH
Confidence 45789999999999999999 678999999999999997 8999999999999999999987 443322
Q ss_pred ccc--------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 264 LRA--------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 264 ~~~--------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
..| ...+|+.+++++||+++++|+. ++++.+ +++++++.++|+|||+.+.
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~----al~~a~~~~~p~liev~v~ 555 (585)
T CHL00099 492 QWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIKS--RKDLKS----SLKEALDYDGPVLIDCQVI 555 (585)
T ss_pred HHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHH----HHHHHHhCCCCEEEEEEEC
Confidence 111 1247899999999999999974 456655 4455556789999999985
No 96
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.65 E-value=5e-16 Score=167.42 Aligned_cols=116 Identities=27% Similarity=0.359 Sum_probs=93.2
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 264 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~ 264 (427)
+++++||+++|.|+|+++| .+++.|||++|||++++. .++|++|+++++|+++||.||+ .++....
T Consensus 434 ~g~gsmG~~l~~aiGa~la-----------~~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~-~~g~~~~ 499 (578)
T PRK06112 434 RGLAGLGWGVPMAIGAKVA-----------RPGAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNG-ILGFQKH 499 (578)
T ss_pred CCccccccHHHHHHHHHhh-----------CCCCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCC-ccCCEEe
Confidence 4678999999999999999 688999999999999886 8999999999999999999986 2332221
Q ss_pred cc------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 265 RA------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 265 ~~------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.+ ...+|+.++|++||+++++|+. +.++.+ +++++.+.+||+|||+++.+
T Consensus 500 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~----al~~a~~~~gp~lIev~~~~ 561 (578)
T PRK06112 500 AETVKFGTHTDACHFAAVDHAAIARACGCDGVRVED--PAELAQ----ALAAAMAAPGPTLIEVITDP 561 (578)
T ss_pred ccccccCCccccCcCCCCCHHHHHHHCCCeEEEeCC--HHHHHH----HHHHHHhCCCCEEEEEEcCc
Confidence 10 0246899999999999999974 556655 44555567899999999854
No 97
>PRK08617 acetolactate synthase; Reviewed
Probab=99.65 E-value=3.3e-16 Score=167.85 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=95.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++++||+++|.|+|+++| .+++.|||++|||+|+|. .++|.+|+++++|+++||.||+ ++++..
T Consensus 410 ~~~~g~mG~~lpaaiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~~~~~ 475 (552)
T PRK08617 410 SNGMQTLGVALPWAIAAALV-----------RPGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDG-HYNMVE 475 (552)
T ss_pred cCccccccccccHHHhhHhh-----------cCCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECC-ccchHH
Confidence 45678999999999999999 688999999999999997 8999999999999998888886 455432
Q ss_pred ccc-----------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~-----------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..+ ...+|+.++|++||+++.+|. ++.++.++++ ++.+.++|+|||+.+.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~----~a~~~~~p~liev~~~~ 537 (552)
T PRK08617 476 FQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLR----EALATDGPVVIDIPVDY 537 (552)
T ss_pred HHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHH----HHHhCCCcEEEEEEecc
Confidence 111 125789999999999999997 4556666555 44566799999999864
No 98
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.65 E-value=4e-16 Score=167.90 Aligned_cols=117 Identities=25% Similarity=0.377 Sum_probs=94.9
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.++.|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.||.++++|+++||.||+ +++...
T Consensus 417 ~~~~g~mG~glpaAiGa~la-----------~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~-~yg~i~ 482 (572)
T PRK06456 417 SSGMGTMGFGLPAAMGAKLA-----------RPDKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNR-TLGLVR 482 (572)
T ss_pred CCCcccccchhHHHHHHHHh-----------CCCCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECC-chHHHH
Confidence 45679999999999999999 688999999999999998 7999999999999999998886 444322
Q ss_pred ccc-------------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA-------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~-------------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..| ...+|+.++|++||+++++|+ ++.++.++++ ++.+.++|+|||+.+.+
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~----~a~~~~~p~lIev~v~~ 546 (572)
T PRK06456 483 QVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLK----SAIKEDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHH----HHHhCCCCEEEEEEeCc
Confidence 110 124789999999999999996 4556666554 44556899999999865
No 99
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.65 E-value=4.8e-16 Score=167.51 Aligned_cols=120 Identities=22% Similarity=0.322 Sum_probs=95.5
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.+.+|+||+++|.|+|+++| .+++.||+++|||+|++. .++|.+++++++|+++||.||+ |++...
T Consensus 404 ~~~~gsmG~glpaAiGa~la-----------~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 404 SNLFATMGVGVPGAIAAKLN-----------YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKD 470 (575)
T ss_pred CCCcchhhchHHHHHHHHHh-----------CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 34679999999999999999 688999999999999997 8999999999999888888775 543210
Q ss_pred c-----c----ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 H-----L----RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~-----~----~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. . .....+|++++|++||+++.+|+ ++.++.++++++++ . +.++|+|||+++..
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 0 0 01134789999999999999996 45677776666654 2 56899999998854
No 100
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=5.3e-16 Score=167.00 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=93.6
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||++++. .++|.+|.++++|+++||.||+ +++...
T Consensus 417 ~~~~g~mG~~lp~aiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~-~~~~i~ 482 (574)
T PRK06882 417 SGGAGTMGFGLPAAIGVKFA-----------HPEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNR-FLGMVK 482 (574)
T ss_pred CCCcccccchhHHHHHHHhh-----------cCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHH
Confidence 45679999999999999999 678899999999999997 7999999999999999999887 333211
Q ss_pred c-----------cc--ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 L-----------RA--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~-----------~~--~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. .. ...+|+.++|++||+++++|+. +.++..++++|++. .++|+|||+.+.+
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDT--PDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 1 00 1246899999999999999975 45666655554421 3789999999865
No 101
>PLN02470 acetolactate synthase
Probab=99.65 E-value=4.2e-16 Score=168.27 Aligned_cols=117 Identities=26% Similarity=0.358 Sum_probs=94.4
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|+|. .++|.+|.++++|+++||.||+ ++++..
T Consensus 422 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~-~yg~i~ 487 (585)
T PLN02470 422 SGGLGAMGFGLPAAIGAAAA-----------NPDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQ-HLGMVV 487 (585)
T ss_pred CCccccccchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHH
Confidence 45679999999999999999 688999999999999998 8999999999999999988886 443321
Q ss_pred cc-----------cc-c--------CchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LR-----------AT-S--------DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~-----------~~-~--------~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. .. . .+|+.++|++||+++.+|+. +.++.+++++| .+.++|+|||+.+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~lieV~i~~ 558 (585)
T PLN02470 488 QWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTR--KSDLREAIQKM----LDTPGPYLLDVIVPH 558 (585)
T ss_pred HHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 10 00 0 26899999999999999974 55766655555 456799999999854
No 102
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.64 E-value=6.4e-16 Score=166.12 Aligned_cols=118 Identities=21% Similarity=0.342 Sum_probs=94.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+++++ ..+|.+|+++++|+++||.||+ |++...
T Consensus 415 ~~~~g~mG~~lpaaiGa~la-----------~~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 415 SGGLGTMGFGLPAAIGAALA-----------NPERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGLVHQ 481 (564)
T ss_pred CCCcccccchhHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccccHH
Confidence 45679999999999999999 678899999999999997 7789999999999999999887 554221
Q ss_pred cc----------cc-ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HL----------RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~----------~~-~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.+ .. ...+|+.++|++||+++++|+. ++++.+++ +++++.++|+|||+.+.+
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al----~~a~~~~~p~lIeV~~~~ 544 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLNN--EADPQAAL----QEAINRPGPALIHVRIDA 544 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHH----HHHHhCCCCEEEEEEeCC
Confidence 10 00 1347899999999999999974 45665544 445556899999999854
No 103
>PRK08611 pyruvate oxidase; Provisional
Probab=99.64 E-value=5.1e-16 Score=167.31 Aligned_cols=117 Identities=25% Similarity=0.297 Sum_probs=93.8
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
....|+||+++|.|+|+++| .+++.|||++|||++++. .++|.+|+++++|+++||.||+ +++...
T Consensus 404 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~-~~g~i~ 469 (576)
T PRK08611 404 SSWLGTMGCGLPGAIAAKIA-----------FPDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQ-QLAFIK 469 (576)
T ss_pred CCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCC-cchHHH
Confidence 34579999999999999999 688999999999999998 8999999999999888888775 333221
Q ss_pred c-----------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 L-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~-----------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. .....+|+.++|++||+++++|+ +++++.++++ .+.+.++|+|||+.+.+
T Consensus 470 ~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~----~a~~~~~p~lIeV~vd~ 531 (576)
T PRK08611 470 YEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFE----EALAQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHH----HHHhCCCCEEEEEEeCC
Confidence 1 01135799999999999999996 4556655554 45566899999999864
No 104
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.64 E-value=6.1e-16 Score=166.04 Aligned_cols=117 Identities=26% Similarity=0.311 Sum_probs=93.5
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccc-c
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM-S 262 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~-~ 262 (427)
...|+||+++|.|+|++++ .+++.|||++|||++++. .++|.+|+++++|+++||.||+ |++.. .
T Consensus 412 ~~~g~mG~glpaaiGa~la-----------~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~ 478 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLL-----------FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMH 478 (557)
T ss_pred CCCccccchHHHHHHHHHh-----------CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHH
Confidence 4569999999999999999 688999999999999987 7999999999999999999987 44311 0
Q ss_pred ccc---------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HLR---------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~~---------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
... ....+|+.+++++||+++.+|+. ++++.+ +++++++.+||+|||+.+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~----al~~a~~~~gp~li~v~~~~ 539 (557)
T PRK08199 479 QEREYPGRVSGTDLTNPDFAALARAYGGHGETVER--TEDFAP----AFERALASGKPALIEIRIDP 539 (557)
T ss_pred HHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHH----HHHHHHhCCCCEEEEEEeCH
Confidence 000 11246899999999999999985 445555 45555567899999999854
No 105
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.64 E-value=5.1e-16 Score=166.38 Aligned_cols=117 Identities=23% Similarity=0.424 Sum_probs=94.3
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCC-CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~-~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~ 262 (427)
.++.|+||+++|.|+|+++| .+ ++.|||++|||+|++. .++|.+|.+++||+++||.||+ +++..
T Consensus 392 ~~~~g~mG~glpaaiGa~la-----------~p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~-~~g~i 457 (549)
T PRK06457 392 SAWLGSMGIGVPGSVGASFA-----------VENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNS-KLGMI 457 (549)
T ss_pred CCCcchhhhhHHHHHHHHhc-----------CCCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECC-ccchH
Confidence 35689999999999999999 67 8899999999999997 8999999999999888888876 44432
Q ss_pred ccc-----------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~~-----------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
... ....+|+.++|++||+++.+|+ ++.++..+++++ .+.++|+|||+++.+
T Consensus 458 ~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~lIeV~i~~ 520 (549)
T PRK06457 458 KFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEF----LNTKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeCc
Confidence 110 1124789999999999999997 456766655544 456899999999853
No 106
>PRK08322 acetolactate synthase; Reviewed
Probab=99.64 E-value=8.2e-16 Score=164.57 Aligned_cols=117 Identities=26% Similarity=0.400 Sum_probs=94.4
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.++.|.||+++|.|+|+++| .+++.|||++|||+++++ .++|.+|.++++|+++||.||+ +++...
T Consensus 402 ~~~~g~mG~~lpaaiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~-~~g~~~ 467 (547)
T PRK08322 402 DNALATMGAGLPSAIAAKLV-----------HPDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDN-AYGMIR 467 (547)
T ss_pred CCCcccccchhHHHHHHHHh-----------CCCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCC-CcchHH
Confidence 45679999999999999999 688999999999999988 7899999999999888888876 444322
Q ss_pred cc-----------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~-----------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. ....+|+.++|++||+++++|+ +++++.++++++ .+.++|+|||+.+.+
T Consensus 468 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a----~~~~~p~lIev~v~~ 529 (547)
T PRK08322 468 WKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEA----LAQPGVHVIDCPVDY 529 (547)
T ss_pred HHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 11 1124789999999999999996 456776655555 456899999998854
No 107
>PRK07064 hypothetical protein; Provisional
Probab=99.64 E-value=7e-16 Score=164.99 Aligned_cols=117 Identities=26% Similarity=0.323 Sum_probs=93.5
Q ss_pred ccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccc
Q 014288 183 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 262 (427)
Q Consensus 183 ~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~ 262 (427)
+.+..|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ +++..
T Consensus 400 ~~~~~g~mG~~lpaAiGa~lA-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~yg~~ 465 (544)
T PRK07064 400 VHALGGGIGQGLAMAIGAALA-----------GPGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDG-GYGVI 465 (544)
T ss_pred eccCCCccccccchhhhhhhh-----------CcCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCC-hhHHH
Confidence 334448999999999999999 688999999999999997 7999999999999988888876 34332
Q ss_pred ccc------------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 263 HLR------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 263 ~~~------------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
... ....+|+.++|++||+++.+|+. +.++.+++++| .+.++|+|||+.++
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a----~~~~~p~lIeV~~~ 528 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTS--ADDFEAVLREA----LAKEGPVLVEVDML 528 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHH----HcCCCCEEEEEEcc
Confidence 211 11357899999999999999974 45666655554 45689999999986
No 108
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.64 E-value=6.9e-16 Score=165.24 Aligned_cols=117 Identities=26% Similarity=0.407 Sum_probs=94.1
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.++.|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ +++...
T Consensus 397 ~~~~g~mG~glpaAiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~-~~~~~~ 462 (548)
T PRK08978 397 SSGLGTMGFGLPAAIGAQVA-----------RPDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQ-RLGMVR 462 (548)
T ss_pred CCchhhhhchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHH
Confidence 45679999999999999999 688999999999999997 8999999999999888888875 443321
Q ss_pred cc----------cc---cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LR----------AT---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~----------~~---~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. .. ..+|+.++|++||+++.+|+ ++.++.+++++ +.+.++|+|||+.+.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~----a~~~~~p~lIeV~id~ 526 (548)
T PRK08978 463 QWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDT----LLNSEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHH----HHhCCCCEEEEEEecC
Confidence 10 01 24789999999999999996 45566665554 4557899999999865
No 109
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.63 E-value=2.2e-15 Score=149.53 Aligned_cols=134 Identities=23% Similarity=0.259 Sum_probs=99.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCeEEEEEcCC-cccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~ 264 (427)
.+.+|.++|+|+|+++| ++++.|||+.|||++ ++| .++|.+|+++++|+++||.||+ |++.....
T Consensus 69 ~g~mG~alpaAiGaklA-----------~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~ 135 (301)
T PRK05778 69 HTLHGRAIAFATGAKLA-----------NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQA 135 (301)
T ss_pred chhhccHHHHHHHHHHH-----------CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcc
Confidence 47899999999999999 789999999999996 687 8899999999999999998886 44322110
Q ss_pred ----------------ccccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec--CCCCC
Q 014288 265 ----------------RATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR--FRGHS 325 (427)
Q Consensus 265 ----------------~~~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R--~~gHs 325 (427)
.....+|+..+|+++|+.++ ++...++.++.+++++|+ +.+||+|||+.+.- .++..
T Consensus 136 s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~----~~~GpalIeV~~~C~~~~~~~ 211 (301)
T PRK05778 136 SPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI----SHKGFAFIDVLSPCVTFNGRN 211 (301)
T ss_pred cCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCCcC
Confidence 00124689999999999987 445557778777666654 56899999986543 33322
Q ss_pred CCCCCCCCCHHHHHHH
Q 014288 326 LADPDELRDPAEKARY 341 (427)
Q Consensus 326 ~~D~~~yR~~~e~~~~ 341 (427)
...+++.+..+|
T Consensus 212 ----~~~~~~~~~~~~ 223 (301)
T PRK05778 212 ----TSTKSPAYMREY 223 (301)
T ss_pred ----CcccCHHHHHHH
Confidence 223556666555
No 110
>PLN02573 pyruvate decarboxylase
Probab=99.63 E-value=9.8e-16 Score=165.17 Aligned_cols=117 Identities=14% Similarity=0.025 Sum_probs=94.0
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+.+|+||+++|.|+|+++| .+++.|||++|||+|+|. .++|.+|+++++|+++||.||+ +++...
T Consensus 424 ~~~~gsmG~glpaaiGa~lA-----------~p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~-~yg~~~ 489 (578)
T PLN02573 424 QMQYGSIGWSVGATLGYAQA-----------APDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNG-GYTIEV 489 (578)
T ss_pred ecchhhhhhhhhHHHHHHHh-----------CCCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceeEEE
Confidence 45679999999999999999 688999999999999997 8999999999999999988886 444332
Q ss_pred cc------cccCchhhcccccCC-----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 264 LR------ATSDPQIYKKGPAFG-----MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 264 ~~------~~~~~d~~~~a~a~G-----~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
.. ....+|+.++|++|| +++.+|+. +.++.+++++|+.. +.++|+|||+.+
T Consensus 490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~--~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRT--EEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred eecccCccccCCCCHHHHHHHhcCcCCceeEEEecC--HHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 11 113578999999985 88999974 55776666655421 357899999987
No 111
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.62 E-value=9.2e-16 Score=164.63 Aligned_cols=117 Identities=26% Similarity=0.457 Sum_probs=94.2
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+++++ ..+|.+|.++++|+++||.||+ +++...
T Consensus 408 ~~~~g~mG~~l~aaiGa~la-----------~~~~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~-~~~~~~ 473 (558)
T TIGR00118 408 SGGLGTMGFGLPAAIGAKVA-----------KPESTVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNR-YLGMVR 473 (558)
T ss_pred CCccccccchhhHHHhhhhh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHH
Confidence 45679999999999999999 678899999999999996 6799999999999999999987 333211
Q ss_pred c-------------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 L-------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~-------------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. .....+|+.+++++||+++++|+. ++++.++++++ .+.++|+|||+++.+
T Consensus 474 ~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a----~~~~~p~liev~~~~ 537 (558)
T TIGR00118 474 QWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEA----LSSNEPVLLDVVVDK 537 (558)
T ss_pred HHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 0 111247899999999999999985 45666655555 455899999999864
No 112
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.62 E-value=3.8e-15 Score=146.30 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=88.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCC-cccccccc
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~ 264 (427)
.+++|+++|+|+|+++| .|++.|||+.|||++. +| ..++.+|+++++||++||.||+ |++.....
T Consensus 67 ~~~~G~alPaAiGaklA-----------~Pdr~VV~i~GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~ 133 (277)
T PRK09628 67 HTTHGRAVAYATGIKLA-----------NPDKHVIVVSGDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQT 133 (277)
T ss_pred eeccccHHHHHHHHHHH-----------CCCCeEEEEECchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecc
Confidence 35889999999999999 7899999999999975 45 6778889999999999998886 44321000
Q ss_pred c--------c--------ccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 265 R--------A--------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 265 ~--------~--------~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
. + .++.|+.++|+++|++++ +..-.++.++.+++++| .+.+||+|||+.+...
T Consensus 134 ~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~A----l~~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 134 SPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKG----FSHKGFSFFDVFSNCH 203 (277)
T ss_pred cCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHH----HhCCCCEEEEEcCCCC
Confidence 0 0 123477999999999985 33334677776655555 4578999999976543
No 113
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.62 E-value=8.6e-16 Score=165.23 Aligned_cols=116 Identities=28% Similarity=0.451 Sum_probs=93.3
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|+|. .++|.+|.++++|+++||.||+ +++...
T Consensus 414 ~~~~g~mG~glpaaiGa~lA-----------~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~ 479 (566)
T PRK07282 414 SGGLGTMGFGIPAAIGAKIA-----------NPDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNH-SLGMVR 479 (566)
T ss_pred CCccccccchhhHhheehee-----------cCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-CchHHH
Confidence 45679999999999999999 688999999999999998 7999999999999998888886 444322
Q ss_pred cc------------c-ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LR------------A-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~------------~-~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. . ...+|+.++|++||+++.+|+. +.++.+++ +.. ..++|+|||+.+.+
T Consensus 480 ~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al----~~~-~~~~p~lIeV~v~~ 542 (566)
T PRK07282 480 QWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFDN--PETLAQDL----EVI-TEDVPMLIEVDISR 542 (566)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHH----HHh-cCCCCEEEEEEeCC
Confidence 11 0 1357899999999999999974 45665555 322 45799999999864
No 114
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.60 E-value=2.2e-15 Score=163.42 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=94.0
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|++++||+++||.||+ +++...
T Consensus 443 ~~~~G~mG~glpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~i~ 508 (612)
T PRK07789 443 SGGLGTMGYAVPAAMGAKVG-----------RPDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNG-NLGMVR 508 (612)
T ss_pred CCCcccccchhhhHHhhhcc-----------CCCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECC-chHHHH
Confidence 45679999999999999999 688999999999999997 8999999999999888888886 343321
Q ss_pred ccc--------------c---cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LRA--------------T---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~~--------------~---~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..| . ..+|+.++|++||+++++|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 509 ~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 509 QWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred HHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 100 0 12689999999999999996 456776666655432 3789999999854
No 115
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.60 E-value=2.4e-15 Score=162.44 Aligned_cols=116 Identities=26% Similarity=0.393 Sum_probs=93.2
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 264 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~ 264 (427)
+++|+||+++|.|+|+++| .+++.|||++|||++++. ..+|.+|.++++|+++||.||+ +++....
T Consensus 416 ~~~gsmG~~lpaaiGa~la-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~g~~~~ 481 (586)
T PRK06276 416 GGLGTMGFGFPAAIGAKVA-----------KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNR-TLGMVYQ 481 (586)
T ss_pred CCccccccchhHHHhhhhh-----------cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHH
Confidence 4678999999999999999 678899999999999998 7999999999999999988886 3332110
Q ss_pred -----------cc--ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 265 -----------RA--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 265 -----------~~--~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. ...+|+.+++++||+++++|+ +++++.+++++| .+.++|+|||+.+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~lIeV~i~~ 544 (586)
T PRK06276 482 WQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEA----IKSGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHH----HhCCCCEEEEEEecc
Confidence 01 124689999999999999996 456776655555 456899999999853
No 116
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.59 E-value=2.6e-15 Score=160.51 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=103.3
Q ss_pred CCHHHHHHHHhcccCCC----ccCCCCCCcccc----c-cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceE
Q 014288 150 VPARAVMSELFGKATGC----CRGQGGSMHMFS----K-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 220 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~----~~G~ggs~H~~~----~-~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~v 220 (427)
+.+..++.++....+.. ...++|..+++. + .....+.+++||+++|.|+|+++| .++ .+
T Consensus 356 i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~~~-r~ 423 (535)
T TIGR03394 356 IAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCT-----------SGK-RI 423 (535)
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHhC-----------CCC-Ce
Confidence 55666666655544321 223444322221 1 112245779999999999999999 334 45
Q ss_pred EEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccccc-------ccCchhhcccccCCCcEEEEeCCCHHH
Q 014288 221 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSDPQIYKKGPAFGMPGFHVDGMDVLK 293 (427)
Q Consensus 221 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~-------~~~~d~~~~a~a~G~~~~~Vdg~D~~a 293 (427)
|+++|||+++|. .++|.||.++++|+++||.||+ +++.....+ ...+|+.++|++||+++.+|+. +.+
T Consensus 424 v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~e 498 (535)
T TIGR03394 424 LTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNA-SWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRT--RAE 498 (535)
T ss_pred EEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECC-ccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCC--HHH
Confidence 789999999997 8999999999999999888886 444332211 1357899999999999999974 456
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 294 VREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 294 v~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+..++++|++ ..++|+|||+.+
T Consensus 499 L~~al~~a~~---~~~~p~lIev~i 520 (535)
T TIGR03394 499 LAAALDKAFA---TRGRFQLIEAML 520 (535)
T ss_pred HHHHHHHHHh---cCCCeEEEEEEC
Confidence 6665555542 234589999976
No 117
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.58 E-value=7e-15 Score=157.76 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=92.5
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccc-
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS- 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~- 262 (427)
.+.+|+||+++|.|+|+++| +++.||+++|||+++|. .++|.||+++++|+++||.||+ ++...
T Consensus 413 ~~~~gsmG~~lpaaiGaala------------~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~-~~~~~~ 477 (554)
T TIGR03254 413 VGTWGVMGIGMGYAIAAAVE------------TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNG-GIYRGD 477 (554)
T ss_pred CCCCCcCCchHHHHHHHHhc------------CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeCh-hhhhhh
Confidence 45679999999999999998 36789999999999998 7899999999999999999997 33110
Q ss_pred -c---c-----cc-ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 -H---L-----RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 -~---~-----~~-~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. . .. ...+||.++|++||+++++|+ ++.++..++++| .+.++|+|||+.+.+
T Consensus 478 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~lIev~id~ 539 (554)
T TIGR03254 478 DVNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEA----LASGKPTLINAVIDP 539 (554)
T ss_pred hhhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEECC
Confidence 0 0 00 135789999999999999996 456776655555 456799999998853
No 118
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.57 E-value=1.1e-14 Score=156.79 Aligned_cols=116 Identities=24% Similarity=0.264 Sum_probs=92.5
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccc--cc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI--GM 261 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~i--s~ 261 (427)
.+.+|+||+++|.|+|+++| +++.|||++|||+++|. .++|.||+++++|+++||.||+ ++ ..
T Consensus 420 ~~~~gsmG~glpaaiGa~la------------~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~~~~~~ 484 (569)
T PRK09259 420 CGTWGVMGIGMGYAIAAAVE------------TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNG-GIYRGD 484 (569)
T ss_pred CCCCccccccHHHHHHHHhc------------CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeCh-hHHHHH
Confidence 45679999999999999998 36789999999999997 7899999999999999999997 33 11
Q ss_pred cc------c---cc-ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 262 SH------L---RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 262 ~~------~---~~-~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. . .. .+.+|+.++|++||+++++|+. +.++.+++++| .+.++|+|||+.+.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~lIev~id~ 547 (569)
T PRK09259 485 DVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVTT--PDELRHALTEA----IASGKPTLINVVIDP 547 (569)
T ss_pred HHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEECC
Confidence 10 0 00 1357899999999999999974 55666655555 456899999998853
No 119
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.57 E-value=2.1e-14 Score=141.83 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=90.7
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc-ccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccc
Q 014288 186 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 263 (427)
Q Consensus 186 ~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~ 263 (427)
..++||.++|+|+|+++| .|++.|||+.|||+ +++| ..+|.+|+++++||++||.||+ |++....
T Consensus 67 ~~g~mG~alpaAiGaklA-----------~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q 133 (286)
T PRK11867 67 FHTIHGRALAIATGLKLA-----------NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQ 133 (286)
T ss_pred hhhhhhcHHHHHHHHHHh-----------CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCc
Confidence 348999999999999999 78999999999996 8888 8899999999999988888885 4442211
Q ss_pred cc-------c---------ccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 264 LR-------A---------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 264 ~~-------~---------~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.. . ....++.++|.++|...+ ++...++.++.+++++|+ +.+||+|||+.+.-
T Consensus 134 ~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al----~~~Gp~lIev~~~C 203 (286)
T PRK11867 134 YSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI----NHKGFSFVEILQPC 203 (286)
T ss_pred cCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH----hCCCCEEEEEeCCC
Confidence 00 0 012578889999999876 444456777777666554 56899999997543
No 120
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.57 E-value=1.5e-14 Score=142.07 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=93.1
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCC-cccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
...+.||.++|+|+|+++| .|+..||+++||| ++.+| .++|.+|+++++|+++||.||+ |++...
T Consensus 56 ~~~~~~G~alp~A~GaklA-----------~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtgg 122 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWA-----------NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTG 122 (279)
T ss_pred CcccccccHHHHHHHHHHH-----------CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcc
Confidence 3468899999999999999 7899999999999 69999 9999999999999999998885 444321
Q ss_pred ccccc----------------cCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HLRAT----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~~~~----------------~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
+...+ ...|+.++|+++|++.+ +....++.++.+++++| .+.+||+|||+...-
T Consensus 123 Q~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~A----l~~~Gps~I~v~~pC 193 (279)
T PRK11866 123 QASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEA----IKHKGFSFIDVLSPC 193 (279)
T ss_pred cccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHH----HhCCCCEEEEEeCCC
Confidence 11000 01388999999999876 45557888877766555 467899999997543
No 121
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.56 E-value=2.1e-14 Score=141.09 Aligned_cols=119 Identities=22% Similarity=0.172 Sum_probs=92.5
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCC-ccccccc
Q 014288 186 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 263 (427)
Q Consensus 186 ~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~ 263 (427)
..+.||.++|+|+|+++| +|++.|||+.|||++. .| .++|.+|+++++||++||.||+ |++....
T Consensus 58 ~~~~mG~alp~AiGaklA-----------~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q 124 (280)
T PRK11869 58 FHTLHGRAIPAATAVKAT-----------NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQ 124 (280)
T ss_pred CCcccccHHHHHHHHHHH-----------CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcce
Confidence 446699999999999999 7899999999999976 56 8899999999999999998885 4432111
Q ss_pred c--------c--------cccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 264 L--------R--------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 264 ~--------~--------~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
. . .....|+.++|+++|++++.. +-.++.++.+++++|+ +.+||+|||+.+.-.
T Consensus 125 ~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al----~~~Gp~lIeV~~pC~ 195 (280)
T PRK11869 125 ASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAI----KHKGLAIVDIFQPCV 195 (280)
T ss_pred ecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEECCCC
Confidence 1 0 012368999999999998863 3557888877666655 568999999976543
No 122
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.56 E-value=1e-14 Score=140.56 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=90.3
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCCccccccc-
Q 014288 186 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSH- 263 (427)
Q Consensus 186 ~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~- 263 (427)
..++||+++|.|+|+++|.--. ..+++.|||+.|||++. +| .+++.++.++++|+++||.||+ ++++..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~------~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~-~yg~~~~ 132 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRE------LDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNE-VYSNTGG 132 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccc------cCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCc-cccCCCC
Confidence 4599999999999999882111 13688999999999975 67 7788899999999999999886 333221
Q ss_pred cc-----------------cccCchhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEe
Q 014288 264 LR-----------------ATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARR-GEGPTLVECETY 319 (427)
Q Consensus 264 ~~-----------------~~~~~d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t~ 319 (427)
+. ....+|+.++|++||+++++ +.-.++.++.+++++| .+ .+||+|||+.+.
T Consensus 133 q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~a----l~~~~GP~lI~v~i~ 203 (237)
T cd02018 133 QRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEA----ISRTDGPTFIHAYTP 203 (237)
T ss_pred CCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHH----HhcCCCCEEEEEeCC
Confidence 11 11247899999999999985 3334567776655555 44 789999999863
No 123
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.55 E-value=3.2e-14 Score=144.75 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=97.5
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCC-CeEEEEEcCCcccccccc-
Q 014288 187 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHL- 264 (427)
Q Consensus 187 ~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-Pvi~VV~NN~y~is~~~~- 264 (427)
.|+||+++|.|+|+++| .+++.|||+.|||++.|. .++|.+++++++ |+++||.||+ +++....
T Consensus 220 ~GsMG~a~p~AlG~ala-----------~p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg-~~~~~g~q 285 (361)
T TIGR03297 220 VGSMGHASQIALGLALA-----------RPDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNG-AHDSVGGQ 285 (361)
T ss_pred echhhhHHHHHHHHHHH-----------CCCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCc-cccccCCc
Confidence 58999999999999999 678999999999999886 789999999996 7999999887 3332111
Q ss_pred -ccccCchhhcccccCCC-cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 014288 265 -RATSDPQIYKKGPAFGM-PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA 339 (427)
Q Consensus 265 -~~~~~~d~~~~a~a~G~-~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~ 339 (427)
......|+.++|++||+ .+++|+ ++.++.++++++ ++.+||+|||+++....+....-+ ..++.|.+
T Consensus 286 ~~~~~~~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a----~~~~gp~lIeV~v~~g~~~~l~rp--~~~p~e~~ 354 (361)
T TIGR03297 286 PTVSQHLDFAQIAKACGYAKVYEVS--TLEELETALTAA----SSANGPRLIEVKVRPGSRADLGRP--TTSPPENK 354 (361)
T ss_pred CCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHH----HhCCCcEEEEEEecCCCccCCCCC--CCCHHHHH
Confidence 11135789999999997 567774 666777766555 456799999999866544332221 24555554
No 124
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.54 E-value=1.9e-12 Score=136.69 Aligned_cols=258 Identities=18% Similarity=0.115 Sum_probs=181.1
Q ss_pred cccccccchhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCC-ChHHHHHHHHHhcCCC------
Q 014288 60 RRLPVVAVSEVVKEKKLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYN-GQEAVSTGFIKLLKKE------ 132 (427)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~e~l~~ly~~M~~~R~~e~~~~~~~~~gk~~G~~~~~~-GqEa~~vg~~~~L~~~------ 132 (427)
.-|.|+|+...-+++.-+...++.+-+|+.++....-+.+......-++.|++.++. --...-|+...++++.
T Consensus 55 ~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~gg 134 (887)
T COG2609 55 TTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGG 134 (887)
T ss_pred CCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCC
Confidence 345688999888888777888899999999998888544444444556888877653 3344557788889874
Q ss_pred CEEEcCCcchHH------HHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHH
Q 014288 133 DSVVSTYRDHVH------ALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKY 206 (427)
Q Consensus 133 D~v~~~yR~~~~------~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~ 206 (427)
|.||-. +|+. +..-|.--++-+..+..-..+ .|-....|.+-..--..-.+.+||-|...|+=.|.-+||
T Consensus 135 DlV~~q--gHaSPg~yArafLeGRlseeqLdnFRqev~g--~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kY 210 (887)
T COG2609 135 DLVFFQ--GHASPGIYARAFLEGRLTEEQLDNFRQEVDG--KGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKY 210 (887)
T ss_pred ceEEEe--cCCCchHHHHHHHhccccHHHHHHHHHhccC--CCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHH
Confidence 988864 4432 222453333333333332221 222222343322111223467899999999999999999
Q ss_pred HhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCccccccccccc-cCchhhcccccCCCcEE
Q 014288 207 RREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGF 284 (427)
Q Consensus 207 ~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~G~~~~ 284 (427)
...+.....++..|+||.|||.+.++...+++..|++++|. ++|||+-|...+..|..... -...+..++++.||.++
T Consensus 211 L~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~Vi 290 (887)
T COG2609 211 LEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVI 290 (887)
T ss_pred HHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEE
Confidence 88665444678999999999999999999999999999998 99999988767776653321 12356677888899988
Q ss_pred EE---------------------------------------------------------------------eCCCHHHHH
Q 014288 285 HV---------------------------------------------------------------------DGMDVLKVR 295 (427)
Q Consensus 285 ~V---------------------------------------------------------------------dg~D~~av~ 295 (427)
+| -|+|+..|+
T Consensus 291 kviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~ 370 (887)
T COG2609 291 KVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVY 370 (887)
T ss_pred EEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHH
Confidence 87 378888888
Q ss_pred HHHHHHHHHHHccC-CCEEEEEEEecCCCCC
Q 014288 296 EVAKEAIERARRGE-GPTLVECETYRFRGHS 325 (427)
Q Consensus 296 ~a~~~A~~~ar~~~-gP~lIe~~t~R~~gHs 325 (427)
+|++.| +..+ +|++|-++|.++.|-.
T Consensus 371 aA~~~A----~~~kg~PtvilA~TIKGyglg 397 (887)
T COG2609 371 AAFKKA----QEHKGRPTVILAKTIKGYGLG 397 (887)
T ss_pred HHHHHH----hcCCCCceEEEEeeeccccCc
Confidence 866555 4555 8999999999988764
No 125
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.52 E-value=4.6e-13 Score=132.46 Aligned_cols=186 Identities=19% Similarity=0.149 Sum_probs=134.2
Q ss_pred cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCeEEEEEcCC-c
Q 014288 180 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-W 257 (427)
Q Consensus 180 ~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~-y 257 (427)
.+++....+.+|.+.++|.|++.|.+.+ +++..|||+.|||++ ..| .++|.-|...+.++++||.||+ |
T Consensus 61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~-------~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y 131 (299)
T PRK11865 61 AWNVPWIHVAFENAAAVASGIERAVKAL-------GKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAY 131 (299)
T ss_pred ccccccchhhhcchHHHHHHHHHHHHHh-------cCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccc
Confidence 3455667789999999999999998765 346789999999996 678 7999999999999999999997 2
Q ss_pred cccccccc---------------------cccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 258 AIGMSHLR---------------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 258 ~is~~~~~---------------------~~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
+.+..+.. .....|+..++.++|++++ +++-.++.++.+++++|+ +.+||+||+
T Consensus 132 ~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~----~~~Gps~I~ 207 (299)
T PRK11865 132 MNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAK----EVEGPAYIQ 207 (299)
T ss_pred cCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEE
Confidence 22111100 1124678889999999888 778889999888776665 568999999
Q ss_pred EEEec--CCCCCCC--------------------CCCCCC---CHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 014288 316 CETYR--FRGHSLA--------------------DPDELR---DPAEKARYAARDPITALKKYLIESSLASEAELKAIEK 370 (427)
Q Consensus 316 ~~t~R--~~gHs~~--------------------D~~~yR---~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i~~ 370 (427)
+.+.- .+++... |+..++ .+..++ -+.+.|+..|-+..-++.++++|+++++++
T Consensus 208 v~sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld-~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~ 286 (299)
T PRK11865 208 VLQPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLHLD-RRTRKPIEEYLKVQGRFKHLTEEDIEILQK 286 (299)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCccccc-ccCCCCHHHHHhhCcchhcCCHHHHHHHHH
Confidence 97544 4444322 111111 111111 112468888877777888899999999999
Q ss_pred HHHHHHHHH
Q 014288 371 KIDEVVEDA 379 (427)
Q Consensus 371 e~~~~v~~a 379 (427)
++++.++.-
T Consensus 287 ~v~~~~~~~ 295 (299)
T PRK11865 287 YIDEKWKEL 295 (299)
T ss_pred HHHHHHHHH
Confidence 998887653
No 126
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.51 E-value=1.3e-13 Score=135.90 Aligned_cols=118 Identities=23% Similarity=0.304 Sum_probs=87.7
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCeEEEEEcCC-cccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 262 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~ 262 (427)
+..+.||.++|+|+|+++| +|++.|||+.|||++ .+| .++|.+|+++++||++||.||+ |++...
T Consensus 50 ~~~t~mG~alPaAiGaklA-----------~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~g 116 (287)
T TIGR02177 50 GFHGLHGRALPVATGIKLA-----------NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKG 116 (287)
T ss_pred CcccccccHHHHHHHHHHH-----------CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhc
Confidence 3346689999999999999 789999999999996 488 8999999999999999998885 444321
Q ss_pred ccccc------------------cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 263 HLRAT------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 263 ~~~~~------------------~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
....+ .++++..+|.++|+.....- .++.++.+++++|+ +.+||+|||+.+.-
T Consensus 117 Q~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al----~~~GpslIeV~~pC 187 (287)
T TIGR02177 117 QASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAI----NHKGYALVDILQPC 187 (287)
T ss_pred ccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHH----hCCCCEEEEEeCCC
Confidence 11000 13456677777877665422 57777777666554 57899999997653
No 127
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.50 E-value=2.6e-14 Score=153.70 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=89.7
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccc-ccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAI-GMS 262 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~i-s~~ 262 (427)
.+.+.||+++|.|+|+++| +++.|||++|||+|+++ ..+|.+|+++++|+++||.||+ |++ ...
T Consensus 422 ~g~~~~G~~lpaaiGaala------------~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~ 487 (568)
T PRK07449 422 RGASGIDGLLSTAAGVARA------------SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLL 487 (568)
T ss_pred CCccchhhHHHHHHHHHhc------------CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCC
Confidence 3467899999999999998 47789999999999987 6899999999999988888886 442 111
Q ss_pred ccc-----------cccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 263 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 263 ~~~-----------~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
... ....+|+.++|++||+++.+|+ ++.++.+++++| .+.++|+|||+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a----~~~~~p~lIev~i 548 (568)
T PRK07449 488 PQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADA----LPTPGLTVIEVKT 548 (568)
T ss_pred CCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHH----hcCCCCEEEEEeC
Confidence 100 0134789999999999999996 455666655554 4568999999977
No 128
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.47 E-value=2.5e-13 Score=146.99 Aligned_cols=161 Identities=23% Similarity=0.179 Sum_probs=115.3
Q ss_pred chHHHHhcCCCHHHHHHHHhcccCCCc--cCCCCCCcccc-ccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCC
Q 014288 141 DHVHALSKGVPARAVMSELFGKATGCC--RGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 217 (427)
Q Consensus 141 ~~~~~La~g~~~~~~~~el~g~~~g~~--~G~ggs~H~~~-~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~ 217 (427)
++...+.-|++-..++.++....+... .++.|...++. .+......++.||+++|.|+|+++| .++
T Consensus 353 ~r~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a-----------~p~ 421 (595)
T TIGR03336 353 VRPPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKA-----------GEK 421 (595)
T ss_pred CCCCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhc-----------CCC
Confidence 345667778888888877766665443 35555433332 2333344568999999999999999 688
Q ss_pred ceEEEEeCCCcccC-ccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccc-c---------ccCchhhcccccCCCcEEE
Q 014288 218 HVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-A---------TSDPQIYKKGPAFGMPGFH 285 (427)
Q Consensus 218 ~~vv~~~GDGa~~~-G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~-~---------~~~~d~~~~a~a~G~~~~~ 285 (427)
+.||+++|||++.+ | .++|.+|.++++|+++||.||+ |++...... . ...+|+.++++++|+++++
T Consensus 422 ~~Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~ 499 (595)
T TIGR03336 422 QRIVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVE 499 (595)
T ss_pred CCEEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEE
Confidence 99999999999986 5 7899999999999988888885 554321100 0 1246899999999999999
Q ss_pred EeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 286 VDGM-DVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 286 Vdg~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
|... |..++.++++ .+.+.++|++|++..
T Consensus 500 v~~~~~l~~l~~al~----~a~~~~gp~li~v~~ 529 (595)
T TIGR03336 500 VVDPLNVKETIEVFK----AALAAEGVSVIIAKQ 529 (595)
T ss_pred EeCcCCHHHHHHHHH----HHHhcCCCEEEEEcc
Confidence 8754 4444555444 444568999999954
No 129
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.38 E-value=7.5e-13 Score=133.16 Aligned_cols=151 Identities=24% Similarity=0.335 Sum_probs=116.1
Q ss_pred CCHHHHHHHHhcccCCCc------cCCCCCCcccc-------c--cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhc
Q 014288 150 VPARAVMSELFGKATGCC------RGQGGSMHMFS-------K--EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA 214 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~------~G~ggs~H~~~-------~--~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~ 214 (427)
+.|+.++.+|.....+.. .| .|..+||. + .+-..++.|+||+|+|+|+|+..|
T Consensus 472 ikPQ~vIk~Ldk~t~d~~~kviitTG-VGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----------- 539 (675)
T KOG4166|consen 472 IKPQYVIKVLDKLTDDTGRKVIITTG-VGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----------- 539 (675)
T ss_pred cChHHHHHHHHHhccCcCceEEEecc-ccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc-----------
Confidence 678888888776655521 22 23333432 1 233468899999999999999999
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccc------------cCchhhcccccCCCc
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT------------SDPQIYKKGPAFGMP 282 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~------------~~~d~~~~a~a~G~~ 282 (427)
+|+.+||-+-||++|.|. .++|.++.+.++||.+++.||+ -.++..+.|. .++++.++|.++|++
T Consensus 540 ~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGik 616 (675)
T KOG4166|consen 540 NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIK 616 (675)
T ss_pred CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCc
Confidence 899999999999999987 8999999999999999999997 4554443321 468999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 283 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 283 ~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
..+|.-. +++.+ +++.....+||+|+|+.|...
T Consensus 617 alRV~K~--edL~~----k~keflsTkGPvLleV~v~~k 649 (675)
T KOG4166|consen 617 ALRVTKK--EDLRE----KIKEFLSTKGPVLLEVIVPHK 649 (675)
T ss_pred hheeehH--HHHHH----HHHHHhCCCCCeEEEEEccCc
Confidence 9999755 34444 555556899999999987543
No 130
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.37 E-value=3e-12 Score=132.18 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCc--ccCCccCCCcc
Q 014288 116 NGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN--LLGGFAFIGEG 193 (427)
Q Consensus 116 ~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~--~~~~~g~lG~~ 193 (427)
.=||-+.--+...|+++|.|+.- .|.. +|| +.-+.+..... ..+-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGtS-------------~FG----------~~~~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGTS-------------FFG----------ALDIRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---cccc-------------ccc----------ceeeecCCCCeEEcccchhhcccc
Confidence 56777888888899999988873 0100 111 11122222221 23567999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccccccccc------
Q 014288 194 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRA------ 266 (427)
Q Consensus 194 lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~------ 266 (427)
+|+|+|+++| .+++++|.|+||||+++- .+++.+..+|+|+ +|||+.||||.|..-.+..
T Consensus 417 ~pAalGa~~A-----------~~drR~IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNd 483 (557)
T COG3961 417 LPAALGAALA-----------APDRRVILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYND 483 (557)
T ss_pred cHhhhhhhhc-----------CCCccEEEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCccc
Confidence 9999999999 789999999999999986 8999999999998 6777777788775433321
Q ss_pred ccCchhhcccccCCCcEEEEe--CCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEec
Q 014288 267 TSDPQIYKKGPAFGMPGFHVD--GMDVLKVREVAKEAIERARR-GEGPTLVECETYR 320 (427)
Q Consensus 267 ~~~~d~~~~a~a~G~~~~~Vd--g~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t~R 320 (427)
....++.++.++||....... .... +.++.+++.+.+ .+++.+|||++.+
T Consensus 484 I~~Wd~~~l~~afg~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~i~lIEv~lp~ 536 (557)
T COG3961 484 IQSWDYTALPEAFGAKNGEAKFRATTG----EELALALDVAFANNDRIRLIEVMLPV 536 (557)
T ss_pred ccccchhhhhhhcCCCCceEEEeecCh----HHHHHHHHHHhcCCCceEEEEEecCc
Confidence 134788899999988654331 1222 233445555444 4689999998754
No 131
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.31 E-value=1.6e-11 Score=125.53 Aligned_cols=118 Identities=24% Similarity=0.339 Sum_probs=93.4
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC--ccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL--WAIGM 261 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~--y~is~ 261 (427)
.|.+|+||-|++.|+++|++ .|++.|+|+.||++|... .-++.|+++++|||++||.||+ |++..
T Consensus 426 aGtfgTMGVG~Gfalaaa~~-----------~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~ 492 (571)
T KOG1185|consen 426 AGTFGTMGVGLGFALAAALA-----------APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDD 492 (571)
T ss_pred CccccccccchhHHHHHHhh-----------CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCc
Confidence 58899999999999999999 799999999999999765 7899999999999988888764 22211
Q ss_pred cccc----c-----------ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 262 SHLR----A-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 262 ~~~~----~-----------~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
.... | ..+..+.+.+++||..++.|+ .++++..+++.++ +.+++|++|.+..-
T Consensus 493 ~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI~ 560 (571)
T KOG1185|consen 493 DGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLIG 560 (571)
T ss_pred ccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEec
Confidence 1100 1 134567889999999999998 5677777666664 45679999999653
No 132
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.29 E-value=3.9e-12 Score=151.16 Aligned_cols=118 Identities=20% Similarity=0.139 Sum_probs=91.8
Q ss_pred cCCccCCCc--chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHc--CCCeEEEEEcCC-cc
Q 014288 184 LGGFAFIGE--GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--KLPIVFVVENNL-WA 258 (427)
Q Consensus 184 ~~~~g~lG~--~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~--~LPvi~VV~NN~-y~ 258 (427)
.++.|.||+ ++|.|+|+++| . ++.|+|++|||+|++. .++|.+|+++ ++|+++||.||+ |+
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala-----------~-~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~ggg 820 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVG-----------C-NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGA 820 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhc-----------C-CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcH
Confidence 467799999 59999999998 4 7789999999999987 8999999984 999988888886 33
Q ss_pred cccc------ccc----c----ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 259 IGMS------HLR----A----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 259 is~~------~~~----~----~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
+-.. ... . ..++|+.++|++||+++.+|+. +.++.++ ++.+.+.++|+||||.|.|.
T Consensus 821 i~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~--~~eL~~a----L~~a~~~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 821 IFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVGT--KSELEDA----LFTSQVEQMDCVVEVESSID 891 (1655)
T ss_pred hhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecCC--HHHHHHH----HHHhhccCCCEEEEEecChh
Confidence 2210 000 0 1247899999999999999974 5566564 44555678999999999653
No 133
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.24 E-value=5.7e-12 Score=125.64 Aligned_cols=203 Identities=19% Similarity=0.257 Sum_probs=121.6
Q ss_pred eecccccCCCChHHHHHHHHHhcCC--CCEEEcCCcchHHH-HhcCCCHHHHHHHHhcccCCCc-----------cCCCC
Q 014288 107 KMFGFVHLYNGQEAVSTGFIKLLKK--EDSVVSTYRDHVHA-LSKGVPARAVMSELFGKATGCC-----------RGQGG 172 (427)
Q Consensus 107 k~~G~~~~~~GqEa~~vg~~~~L~~--~D~v~~~yR~~~~~-La~g~~~~~~~~el~g~~~g~~-----------~G~gg 172 (427)
++.|++.++.|+-.+.+.++.++++ .|+++-.-.+|+.. +....-++.-+.+++...+... .-.|-
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGi 124 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGI 124 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB
T ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCC
Confidence 4579999999999999999999986 46677777788754 2212222222222222211110 00122
Q ss_pred CCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCC-----C
Q 014288 173 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-----P 247 (427)
Q Consensus 173 s~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-----P 247 (427)
..|.....-+.....|-||+++.+|.|+++- +||.+|+|++|||++.+|. +|+.|.. |
T Consensus 125 pSH~~p~tPGsIhEGGELGYaLshA~GA~~D-----------nPdliv~~vvGDGEaETGp------lA~sWh~~kflnP 187 (379)
T PF09364_consen 125 PSHVSPETPGSIHEGGELGYALSHAFGAVFD-----------NPDLIVACVVGDGEAETGP------LAASWHSNKFLNP 187 (379)
T ss_dssp -SSS-TTSTT-S---SSTS-HHHHHHHHHTT------------TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-T
T ss_pred ccccCcCCCCccCcCcchhhHHHHHhhcccC-----------CCCeEEEEEecCCcccCCc------ccccccccceeCc
Confidence 4666655555555668999999999999997 7999999999999999984 5666642 2
Q ss_pred -----eEEEEEcCCccccccccccc-cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHH----H-------ccC-
Q 014288 248 -----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA----R-------RGE- 309 (427)
Q Consensus 248 -----vi~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~a----r-------~~~- 309 (427)
|+=|+.=|+|.|+.++-..+ ...++.+.+++||+..+.|+|.|+.+++..+..+++++ + +++
T Consensus 188 ~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~ 267 (379)
T PF09364_consen 188 ATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNP 267 (379)
T ss_dssp TTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred ccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56666669999998875443 34678999999999999999999999988765554432 2 221
Q ss_pred --CC--EEEEEEEecCCCCCC
Q 014288 310 --GP--TLVECETYRFRGHSL 326 (427)
Q Consensus 310 --gP--~lIe~~t~R~~gHs~ 326 (427)
+| -+|.++|.++++-..
T Consensus 268 ~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 268 AYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp S----EEEEEEE--TTTTS-S
T ss_pred CCCCCCcEEEEECCcccCCcc
Confidence 23 257788888876543
No 134
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.13 E-value=3.6e-10 Score=115.25 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHhcCCCCEEEcC---CcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCc
Q 014288 116 NGQEAVSTGFIKLLKKEDSVVST---YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGE 192 (427)
Q Consensus 116 ~GqEa~~vg~~~~L~~~D~v~~~---yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~ 192 (427)
..|--+.-++...+.+++.|++. -.+-.|.|++ . +.-+++|+ .-+++.||+
T Consensus 395 ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~------------~-------~~p~~YH~-------EYgfSCMGY 448 (617)
T COG3962 395 PTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWR------------A-------GVPGTYHL-------EYGFSCMGY 448 (617)
T ss_pred ccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhc------------c-------CCCCceee-------eeccccccc
Confidence 44444445566777777777764 1222222221 1 22334565 346899999
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccccccc--------
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------- 264 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~-------- 264 (427)
-+.-++|+++| .+++-|++++||||+.|= +.+|.++..++..|++|+.+|. +++.+..
T Consensus 449 EiaG~lG~K~a-----------~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~-GyGCIn~LQm~~Gg~ 514 (617)
T COG3962 449 EIAGGLGAKAA-----------EPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNR-GYGCINRLQMATGGA 514 (617)
T ss_pred ccccccccccC-----------CCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCC-CcchhhhhhhhcCcc
Confidence 99999999988 688999999999999884 8999999999999888888774 3332211
Q ss_pred ------------ccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 265 ------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 265 ------------~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
.+....||+..|++||+..++|. ++.++ +.|++.+++..+++||+++|.
T Consensus 515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL----~aAL~~Ak~~~~ttvi~I~t~ 575 (617)
T COG3962 515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEEL----EAALADAKASDRTTVIVIDTD 575 (617)
T ss_pred hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHH----HHHHHHHHhCCCCEEEEEecC
Confidence 12345789999999999999996 55554 457777889999999999774
No 135
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.03 E-value=4.3e-10 Score=110.72 Aligned_cols=157 Identities=22% Similarity=0.275 Sum_probs=121.6
Q ss_pred HHHHHhcccCCCccCCCC-------CCccccccCccc-CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCC
Q 014288 155 VMSELFGKATGCCRGQGG-------SMHMFSKEHNLL-GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGD 226 (427)
Q Consensus 155 ~~~el~g~~~g~~~G~gg-------s~H~~~~~~~~~-~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GD 226 (427)
-|.+.||+.......-|- ..|.+.+.+.+. +..|++|+.+|.|+|...| +|++.+|++.||
T Consensus 378 emn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a-----------dp~r~vvalsgd 446 (592)
T COG3960 378 EMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPKRNVVAISGD 446 (592)
T ss_pred HHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec-----------CCCCceEEeecC
Confidence 356667776544322111 356676666654 6689999999999999998 899999999999
Q ss_pred CcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccc----------------------cCchhhcccccCCCcEE
Q 014288 227 GTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKKGPAFGMPGF 284 (427)
Q Consensus 227 Ga~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~----------------------~~~d~~~~a~a~G~~~~ 284 (427)
=.++. ..|+|...+++++|-|+|+.||.| ++...+.|+ -..|-.+.++++|++.+
T Consensus 447 ydfqf--mieelavgaq~k~pyihv~vnnay-lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckai 523 (592)
T COG3960 447 YDFQF--LIEELAVGAQFKIPYIHVLVNNAY-LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAI 523 (592)
T ss_pred chHHH--HHHHHhhhhcccCceEEEEecchH-HHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeE
Confidence 99986 499999999999999999999986 232222221 12466778899999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 285 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 285 ~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
+|- +|.++..++.+|.....+..-|++||+...|....++.
T Consensus 524 rv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 524 RVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred Eec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 995 66788889988888888889999999999888777654
No 136
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.94 E-value=2.2e-08 Score=99.43 Aligned_cols=121 Identities=19% Similarity=0.137 Sum_probs=93.2
Q ss_pred ccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc-ccCccHHHHHHHHHHcCCCeEEEEEcCC-cccc
Q 014288 183 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIG 260 (427)
Q Consensus 183 ~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is 260 (427)
.....+..|-++++|.|+++| .++..||++.|||. +..| ...|.-+.+.+.+|++||.||. |+.+
T Consensus 65 ~~~~hs~~gra~a~atGik~A-----------~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnT 131 (294)
T COG1013 65 PPWVHSLHGRAAAVATGIKLA-----------NPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNT 131 (294)
T ss_pred CCceeeccCcchhhHHHHHHh-----------ccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccC
Confidence 344567789999999999999 56778999999995 6799 8899999999999999999996 4433
Q ss_pred ccccccc-----------------cCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 261 MSHLRAT-----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 261 ~~~~~~~-----------------~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
..+...+ ...|+..++.++|..++ ++.--++.++.+.+++|+ +.+||+||++.+.-
T Consensus 132 ggQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~----~~~Gps~I~v~sPC 205 (294)
T COG1013 132 GGQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA----EHKGPSFIDVLSPC 205 (294)
T ss_pred CCccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH----hccCCeEEEEecCC
Confidence 2211111 22378888999999877 777778888877666654 56799999996543
No 137
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.86 E-value=5.9e-09 Score=107.80 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=86.9
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCcccccccc
Q 014288 186 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHL 264 (427)
Q Consensus 186 ~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~ 264 (427)
.+|++|+.+|.++|+++| .++++|+.|+|||++++- .+++.++.+|+|| +||++.|++|.|....+
T Consensus 413 ~wgsIG~svga~lG~a~a-----------~~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~IH 479 (561)
T KOG1184|consen 413 QWGSIGWSVGATLGYAQA-----------APEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEIH 479 (561)
T ss_pred EEeeccccchhhhhhhhc-----------cCCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEeec
Confidence 468999999999999999 678999999999999986 8999999999999 56666677887754333
Q ss_pred c----cccCchhhcccccCCCcEE---EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 265 R----ATSDPQIYKKGPAFGMPGF---HVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 265 ~----~~~~~d~~~~a~a~G~~~~---~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
. ...+.++.++.++||..-- ...-..-.+..++++.+.. .+.+++.+|||+.
T Consensus 480 ~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~--~~~~~i~liEv~l 538 (561)
T KOG1184|consen 480 DGPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATF--EKNDKIRLIEVIL 538 (561)
T ss_pred CCCccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhh--cccCceEEEEEec
Confidence 2 1234788888899886542 2221222345555554432 2467899999976
No 138
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.65 E-value=1.2e-06 Score=88.70 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=73.7
Q ss_pred ceEEEEeCCCc-ccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccc----------------cccccCchhhcccccC
Q 014288 218 HVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH----------------LRATSDPQIYKKGPAF 279 (427)
Q Consensus 218 ~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~----------------~~~~~~~d~~~~a~a~ 279 (427)
..||++.|||. +..| ...|.-+...+.+|++||.||. |+.+..+ .......|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 57999999997 5788 8889999999999999999886 4443211 1111246788889999
Q ss_pred CCcEE-EEeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 280 GMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 280 G~~~~-~Vdg-~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
|.+++ ++.- .++.++.+++++|+ +.+||.+|++.+...
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~----~~~Gps~I~v~sPC~ 269 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAE----AYDGPSLIIAYSPCI 269 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHh----cCCCCEEEEEEccCc
Confidence 99887 6654 48888888776665 569999999976544
No 139
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=2.7e-07 Score=98.67 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=119.5
Q ss_pred eecccccCCCChHHHHHHHHHhcCCCC--EEEcCCcchHHHH-hcCCCH--------------HHHHHHHhcccCCCccC
Q 014288 107 KMFGFVHLYNGQEAVSTGFIKLLKKED--SVVSTYRDHVHAL-SKGVPA--------------RAVMSELFGKATGCCRG 169 (427)
Q Consensus 107 k~~G~~~~~~GqEa~~vg~~~~L~~~D--~v~~~yR~~~~~L-a~g~~~--------------~~~~~el~g~~~g~~~G 169 (427)
+..|++.++.|+--+.+.+..++++.| .++-.-.+|+... ..+.-+ ++=|.+|+.+-..+ .
T Consensus 58 r~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~P-g- 135 (793)
T COG3957 58 RLLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFP-G- 135 (793)
T ss_pred hhcccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCC-C-
Confidence 456899999999999999999998754 4555555676532 111111 11133444333221 1
Q ss_pred CCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHH-HHcCCC-
Q 014288 170 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMA-ALWKLP- 247 (427)
Q Consensus 170 ~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A-~~~~LP- 247 (427)
|-..|+.....+.....|.||+++..|.|+++- +|+.++.|++|||....|... .-..+ .-++-+
T Consensus 136 -Gi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d-----------~Pdli~~~vvGDGeaetgpla-tsWhs~kf~np~~ 202 (793)
T COG3957 136 -GIGSHVAPETPGSIHEGGELGYALSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLA-TSWHSNKFLNPAR 202 (793)
T ss_pred -CcccccCCCCCCccCcCcchhHHHHHHHHhhcC-----------CCCcEEEEEecccccccCccc-cccccccccCccc
Confidence 224677766666666779999999999999987 799999999999977766311 11111 111211
Q ss_pred ---eEEEEEcCCccccccccccc-cCchhhcccccCCCcEEEEeCCCHHHHHHHH
Q 014288 248 ---IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 298 (427)
Q Consensus 248 ---vi~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~ 298 (427)
|+=|..=|+|.|+-++.-.+ +..++.+.+++||+.-+.|+|.|+.++...+
T Consensus 203 dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 203 DGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred cCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 66666679999988775443 4567889999999999999998888854443
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.80 E-value=0.00012 Score=78.31 Aligned_cols=120 Identities=26% Similarity=0.286 Sum_probs=86.8
Q ss_pred cCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCCcc
Q 014288 180 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWA 258 (427)
Q Consensus 180 ~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~y~ 258 (427)
+++....+-.||.+++.|-|+.++ ..+++|+++|||.|. .| ..+|.-|+..+.+++++|.+|.+.
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~------------~~k~~va~iGDsTF~HsG--i~~l~nAV~n~~~~~~vvLdN~~t 485 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFA------------STKKIVAVIGDSTFFHSG--ILALINAVYNKANILVVVLDNRTT 485 (640)
T ss_pred Ccchhhhhhhccchhhhccccccc------------cCCceEEEeccccccccC--cHHHHHHHhcCCCeEEEEEeccch
Confidence 344445566788899999999887 237899999999975 67 677999999999999999999854
Q ss_pred cccccccc-----------ccCchhhcccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 014288 259 IGMSHLRA-----------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 259 is~~~~~~-----------~~~~d~~~~a~a~G~~~~-~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 317 (427)
--|-.+.. ....++.+..++.|+..+ +||-.|+.++.+ +++.+++..||++|.++
T Consensus 486 AMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~----~~keale~~gpsViiak 552 (640)
T COG4231 486 AMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSE----AIKEALEVPGPSVIIAK 552 (640)
T ss_pred hccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHH----HHHHHhcCCCceEEEEc
Confidence 33322111 112457778899999877 556566666665 44555678899999774
No 141
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.70 E-value=0.00021 Score=83.14 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=73.6
Q ss_pred ceEEEEeCCCc-ccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccc-------cc---------cccccCchhhcccccC
Q 014288 218 HVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM-------SH---------LRATSDPQIYKKGPAF 279 (427)
Q Consensus 218 ~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~-------~~---------~~~~~~~d~~~~a~a~ 279 (427)
..||++.|||. +..| ...|.-+...+.+|.+||.||. |+.+. |. .......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 46999999996 5788 7889999999999999999886 43322 11 1111346788889999
Q ss_pred CCcEE-EEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 280 GMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 280 G~~~~-~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
|.+++ ++. +.++.++.+++++| .+.+||.+|++.+...
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A----~~~~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREA----EAYDGPSIVIAYSPCI 1069 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHH----HcCCCCEEEEEECCCc
Confidence 99877 776 45888888866665 4678999999976543
No 142
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.50 E-value=0.00018 Score=76.00 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC-eEEEEEcCCccccc--cccc----
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGM--SHLR---- 265 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~--~~~~---- 265 (427)
-++-|+|++.| ..+.+|.++||=|+-.- ...|-+......| +|+|++|||-+|-- +...
T Consensus 427 ~vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~ 492 (566)
T COG1165 427 TVSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPV 492 (566)
T ss_pred hHHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcch
Confidence 47789999987 35569999999997532 2345566667777 45555666645421 1110
Q ss_pred -----cc-cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 266 -----AT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 266 -----~~-~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
.+ ...||...|+.||+.+.+++..+ + ++++++.+-...|-.+||++|.|-
T Consensus 493 fe~~F~tPh~ldF~~la~~y~l~y~~~~s~~--~----l~~~~~~~~~~~g~~viEvkt~r~ 548 (566)
T COG1165 493 FERLFGTPHGLDFAHLAATYGLEYHRPQSWD--E----LGEALDQAWRRSGTTVIEVKTDRS 548 (566)
T ss_pred HHHhcCCCCCCCHHHHHHHhCccccccCcHH--H----HHHHHhhhccCCCcEEEEEecChh
Confidence 01 24689999999999999987653 4 444555555567899999999763
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.30 E-value=0.00088 Score=77.39 Aligned_cols=120 Identities=18% Similarity=0.095 Sum_probs=80.8
Q ss_pred ccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCeEEEEEcCCccccc
Q 014288 183 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNLWAIGM 261 (427)
Q Consensus 183 ~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~ 261 (427)
....+..||.....++|.+.+ ..++.||+++|||.+ ..| .-+|.-|+.-+.+++++|.+|...--|
T Consensus 463 ~~~~~~~MG~~g~~~~G~a~~-----------~~~~~v~a~iGDgTf~HSG--~~al~~AV~~~~nit~~IL~N~~tAMT 529 (1159)
T PRK13030 463 DTTGLTQMGGEGVDWIGHAPF-----------TETKHVFQNLGDGTYFHSG--SLAIRQAVAAGANITYKILYNDAVAMT 529 (1159)
T ss_pred ccceeeccCccchhhceeccc-----------cCCCCEEEEeccchhhhcC--HHHHHHHHhcCCCeEEEEEeCCccccc
Confidence 344667899999999999987 345679999999996 467 669999999999999999988732222
Q ss_pred cccccccCchhhc---ccccCCCcEEEEeCCCHHH-----HH--------HHHHHHHHHH-HccCCCEEEEE
Q 014288 262 SHLRATSDPQIYK---KGPAFGMPGFHVDGMDVLK-----VR--------EVAKEAIERA-RRGEGPTLVEC 316 (427)
Q Consensus 262 ~~~~~~~~~d~~~---~a~a~G~~~~~Vdg~D~~a-----v~--------~a~~~A~~~a-r~~~gP~lIe~ 316 (427)
-.+......++.+ ..++.|++-+.|-..||.. +. +.+. ++++. ++.+|+++|..
T Consensus 530 GgQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~-~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 530 GGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELD-AVQRELRETPGVTVLIY 600 (1159)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHH-HHHHHHhcCCCcEEEEE
Confidence 2111111234444 6779999888765455544 11 2222 22333 36788998876
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.18 E-value=0.0018 Score=74.72 Aligned_cols=119 Identities=21% Similarity=0.140 Sum_probs=84.2
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcc-cCccHHHHHHHHHHcCCCeEEEEEcCCc-ccccc
Q 014288 185 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNLW-AIGMS 262 (427)
Q Consensus 185 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~ 262 (427)
.++..||.....++|.+.+ ..++.||+++|||.+ ..| .-+|.-|+.-+.+++++|.+|.. +++..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG--~~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG--LLAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred CeeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC--HHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 5677899999999998876 345679999999996 477 77899999999999999888873 22221
Q ss_pred cc--ccccCchhhcccccCCCcEEEEeCCCHHHHHHH--------------HHHHHHHHHccCCCEEEEE
Q 014288 263 HL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV--------------AKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 263 ~~--~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a--------------~~~A~~~ar~~~gP~lIe~ 316 (427)
+. ...+..++....++.|+.-+.|-..||..+... ++...+..|+.+|+++|..
T Consensus 545 Q~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 545 QPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred CCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 10 112346788889999998887765566655332 3322222336788998876
No 145
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.93 E-value=0.0031 Score=72.88 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=79.5
Q ss_pred cCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCCcccccc
Q 014288 184 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMS 262 (427)
Q Consensus 184 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~ 262 (427)
..++..||.....++|.+-+ ..++.||+++|||.+. .| .-+|.-|+.-+.+++++|.+|...--|-
T Consensus 491 ~~~~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG--~~alr~AV~~~~nit~kIL~N~avAMTG 557 (1186)
T PRK13029 491 TEGFSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG--LLAIRQAIAAGVNITYKILYNDAVAMTG 557 (1186)
T ss_pred cceeeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC--HHHHHHHHhcCCCEEEEEEeCcchhccC
Confidence 44567899999999999877 3456799999999964 67 7789999999999999998887322121
Q ss_pred cccc---ccCchhhcccccCCCcEEEEeCCCHHHHH--------------HHHHHHHHHHHccCCCEEEEE
Q 014288 263 HLRA---TSDPQIYKKGPAFGMPGFHVDGMDVLKVR--------------EVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 263 ~~~~---~~~~d~~~~a~a~G~~~~~Vdg~D~~av~--------------~a~~~A~~~ar~~~gP~lIe~ 316 (427)
.+.. ...+.+....++.|+.-+.|-.+||..+. +.++...+..|+.+|+++|..
T Consensus 558 gQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 558 GQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred CCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 11233444678999987766444454332 223322222336788888876
No 146
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.52 E-value=0.023 Score=50.11 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEe-CCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d 271 (427)
....|.|.+++ .. ..+++.. |.|..+. .+.+..|...++|+|+|+...+..... .. .....+
T Consensus 47 a~~~A~G~a~~-----------~~-~~v~~~~~gpg~~~~---~~~l~~a~~~~~Pvl~i~~~~~~~~~~-~~-~~q~~~ 109 (154)
T cd06586 47 AAGAAAGYARA-----------GG-PPVVIVTSGTGLLNA---INGLADAAAEHLPVVFLIGARGISAQA-KQ-TFQSMF 109 (154)
T ss_pred HHHHHHHHHHh-----------hC-CEEEEEcCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCChhhhc-cC-cccccC
Confidence 45667777776 23 3333334 8887643 678888889999999999766532111 11 111223
Q ss_pred hhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
....++.+..-.+.+ .++.+..+.+.+|++.+....||++|++
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 110 DLGMYRSIPEANISS--PSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHHHhhheEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 344445444333344 5667778888889988887889999986
No 147
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.39 E-value=0.033 Score=50.68 Aligned_cols=92 Identities=14% Similarity=0.017 Sum_probs=64.7
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|...++|+|+|.-+.....-. .......|..++++.+--...+|+ ++.++.++
T Consensus 65 ~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~ 137 (164)
T cd07039 65 GVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVYNETVT--SPEQLPEL 137 (164)
T ss_pred EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcEEEEeC--CHHHHHHH
Confidence 45566668887764 668889999999999998765422110 111112355666666665566675 67788899
Q ss_pred HHHHHHHHHccCCCEEEEE
Q 014288 298 AKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 298 ~~~A~~~ar~~~gP~lIe~ 316 (427)
+++|++.++..+||+.|++
T Consensus 138 i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 138 LDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHHhcCCCCEEEEe
Confidence 9999999888889999998
No 148
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.16 E-value=0.051 Score=48.30 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=56.3
Q ss_pred CCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHH
Q 014288 225 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIER 304 (427)
Q Consensus 225 GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ 304 (427)
|=|.++. ..+|..|...++|+|+|+-+....-......| ..|...+++.+-....++ .++.++.+.+.+|++.
T Consensus 68 gpG~~n~---~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~~~~~~~~i--~~~~~~~~~i~~A~~~ 140 (155)
T cd07035 68 GPGLTNA---VTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRPITKWAYRV--TSPEEIPEALRRAFRI 140 (155)
T ss_pred CCcHHHH---HHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHHHhceEEEc--CCHHHHHHHHHHHHHH
Confidence 5555543 78899999999999999876541111111111 134444444444345566 4678899999999999
Q ss_pred HHcc-CCCEEEEE
Q 014288 305 ARRG-EGPTLVEC 316 (427)
Q Consensus 305 ar~~-~gP~lIe~ 316 (427)
+... +||+.|++
T Consensus 141 a~~~~~gPv~l~i 153 (155)
T cd07035 141 ALSGRPGPVALDL 153 (155)
T ss_pred hcCCCCCcEEEEe
Confidence 9887 79999987
No 149
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.03 E-value=0.049 Score=49.66 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=62.0
Q ss_pred EEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHH
Q 014288 220 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAK 299 (427)
Q Consensus 220 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~ 299 (427)
+++..|=|.++. .-+|..|...+.|+|+|+-.-...... ........|...+++.+.-...+++ ++.++.++++
T Consensus 68 ~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~~d~~~~~~~~~k~~~~v~--~~~~~~~~~~ 141 (172)
T PF02776_consen 68 VIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEG-RGAFQQEIDQQSLFRPVTKWSYRVT--SPDDLPEALD 141 (172)
T ss_dssp EEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTT-TTSTTSSTHHHHHHGGGSSEEEEEC--SGGGHHHHHH
T ss_pred EEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhc-ccccccchhhcchhccccchhcccC--CHHHHHHHHH
Confidence 333445555543 667888899999999998765522222 1111223466677788877788886 4557888899
Q ss_pred HHHHHH-HccCCCEEEEEE
Q 014288 300 EAIERA-RRGEGPTLVECE 317 (427)
Q Consensus 300 ~A~~~a-r~~~gP~lIe~~ 317 (427)
+|++.+ ....||+.|++.
T Consensus 142 ~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 142 RAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHCSTSEEEEEEE
T ss_pred HHHHHhccCCCccEEEEcC
Confidence 999998 667899999983
No 150
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.93 E-value=0.1 Score=47.29 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=68.8
Q ss_pred CcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHH-HcCCCeEEEEEcCCccccccccccccC
Q 014288 191 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRATSD 269 (427)
Q Consensus 191 G~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvi~VV~NN~y~is~~~~~~~~~ 269 (427)
+.+..+|.|..++ .++.++|+.+=|-. .....|..|. ..+.|+|+|+-.-+. .+.....|...
T Consensus 44 e~aa~~aAg~~~~------------~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~ 107 (157)
T TIGR03845 44 EEGVGICAGAYLA------------GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPM 107 (157)
T ss_pred HHHHHHHHHHHHh------------cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccch
Confidence 4556666666654 35567888887733 4577888888 999999999954431 11100011100
Q ss_pred chhhc-ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 270 PQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 270 ~d~~~-~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
..+.. .....+++...++ +++++ .++.+|++.+.++++|+.|-+
T Consensus 108 g~~~~~~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 108 GRATPKLLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred hhhhHHHHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 01111 1133566777775 47788 999999999999999999876
No 151
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=95.71 E-value=0.079 Score=48.05 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=61.6
Q ss_pred eEEEEe--CCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccc-ccc-c--cC-chhhcccccCCCcEEEEeCCC
Q 014288 219 VTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-T--SD-PQIYKKGPAFGMPGFHVDGMD 290 (427)
Q Consensus 219 ~vv~~~--GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~-~~~-~--~~-~d~~~~a~a~G~~~~~Vdg~D 290 (427)
+.+|++ |=|.++. .-+|..|...+.|+|+|+-+.... .+... ..+ . .. .|...+++.+--...+|. +
T Consensus 60 ~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~ 134 (162)
T cd07038 60 LGALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--D 134 (162)
T ss_pred CEEEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--C
Confidence 444444 6666653 668888999999999998765311 11100 000 0 01 134556666655666774 6
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 291 VLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 291 ~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
+.++.+.+++|++.+..++||++|++
T Consensus 135 ~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 135 PENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 77888999999999999889999987
No 152
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.45 E-value=0.12 Score=46.26 Aligned_cols=91 Identities=27% Similarity=0.221 Sum_probs=59.8
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
++++..|-|..+. ...|-.|...+.|+|+|+-+.... .+.+...+ ...+.....+. .+...++ .++.++.+.
T Consensus 67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 139 (160)
T cd07034 67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQ-SDLMAARYGGH-PWPVLAP--SSVQEAFDL 139 (160)
T ss_pred EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCc-HHHHHHHhCCC-CEEEEeC--CCHHHHHHH
Confidence 6667778887764 667888888899999998764311 11100011 11222333333 3455555 478899999
Q ss_pred HHHHHHHHHccCCCEEEEE
Q 014288 298 AKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 298 ~~~A~~~ar~~~gP~lIe~ 316 (427)
+++|++.++.+++|++|..
T Consensus 140 ~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 140 ALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 9999999999889999865
No 153
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.62 E-value=0.23 Score=51.30 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEE-eCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccc--ccccccccC
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSD 269 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is--~~~~~~~~~ 269 (427)
++.+|+|+++| +.++++. .|-|=..| +|.+.+++-..+|+|+++.+.. +.+ .++......
T Consensus 60 A~~~a~GAs~a-------------G~Ra~TaTSg~Gl~lm---~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D 122 (376)
T PRK08659 60 SMAAVIGASWA-------------GAKAMTATSGPGFSLM---QENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGD 122 (376)
T ss_pred HHHHHHhHHhh-------------CCCeEeecCCCcHHHH---HHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHH
Confidence 57889999998 4344444 45554445 8899999999999888888865 322 232222222
Q ss_pred chhhcccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 014288 270 PQIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326 (427)
Q Consensus 270 ~d~~~~a~a~G-~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 326 (427)
.+. .+.-++| .+.+.+...|+.++++-...|++.+.+.+-|++|-...+ -+|+.
T Consensus 123 ~~~-~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 123 MMQ-ARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred HHH-HhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 222 2333444 444667778999999999999999998889999988873 67764
No 154
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.42 E-value=0.26 Score=50.52 Aligned_cols=114 Identities=19% Similarity=0.131 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchh
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 272 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~ 272 (427)
++..|+|+++| +.++++.+-++++.-- +|.|.+|+-..+|+++++.+-. +-++.. .+....|.
T Consensus 60 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~ 122 (352)
T PRK07119 60 AINMVYGAAAT-------------GKRVMTSSSSPGISLK--QEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDY 122 (352)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCcchHHHH--HHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHH
Confidence 57889999998 5567888877776532 8999999999999888887754 232211 11111122
Q ss_pred --hcccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 273 --YKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 273 --~~~a~a~G-~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
+.+..++| .+.+..+..|+.++++-...|++-+.+.+-|+++-..++ .+|+
T Consensus 123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~ 176 (352)
T PRK07119 123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM 176 (352)
T ss_pred HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence 21222332 345566778999999999999999988889999988874 3665
No 155
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.40 E-value=0.3 Score=44.51 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=57.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHH----
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK---- 293 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~a---- 293 (427)
.++++..|=|.++. .-++..|-..+.|+|+|+-+-..........| ..|...+++.+--...+|. ++.+
T Consensus 62 gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v~--~~~~~~~~ 134 (162)
T cd07037 62 VAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TIDQVGLFGDYVRWSVDLP--PPEDDDDL 134 (162)
T ss_pred EEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--ccchhhhccceeeEEEecC--CcccchhH
Confidence 34455556776663 67888999999999999865432111111111 1344445554444444553 3334
Q ss_pred --HHHHHHHHHHHHHccC-CCEEEEEE
Q 014288 294 --VREVAKEAIERARRGE-GPTLVECE 317 (427)
Q Consensus 294 --v~~a~~~A~~~ar~~~-gP~lIe~~ 317 (427)
+.+.+.+|+..++.++ ||++|++-
T Consensus 135 ~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 135 WYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7788888999998864 99999873
No 156
>PRK08611 pyruvate oxidase; Provisional
Probab=93.26 E-value=0.8 Score=49.87 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=64.4
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|+|+|+-+-..........| ..|...+++.+--...+|+ ++.++.++
T Consensus 70 gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~itk~~~~v~--~~~~~~~~ 142 (576)
T PRK08611 70 GVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQ--EVNLEKMFEDVAVYNHQIM--SAENLPEI 142 (576)
T ss_pred eEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCCCcc--ccCHHHHhhcccceeEEeC--CHHHHHHH
Confidence 45566668888874 56888899999999999875442211111111 2355566666554455664 67788899
Q ss_pred HHHHHHHHHccCCCEEEEEE
Q 014288 298 AKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~~gP~lIe~~ 317 (427)
+.+|+..+...+||+.|++-
T Consensus 143 l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 143 VNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred HHHHHHHHhhCCCCEEEEeC
Confidence 99999998888899999984
No 157
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.91 E-value=0.76 Score=49.71 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=64.9
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-.-+.|||+|+-......-..........|...+++.+--...+|+ ++.++.+.
T Consensus 67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 141 (554)
T TIGR03254 67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG 141 (554)
T ss_pred EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence 45666668888874 66888999999999999865432210000011112355566666666666775 67888899
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~ 317 (427)
+.+|++.+..+ .||+.|++-
T Consensus 142 i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 142 IARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHHHhcCCCCcEEEEcC
Confidence 99999998876 489999984
No 158
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=92.80 E-value=0.9 Score=49.12 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=61.8
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-.-+.|+|+|+-.-....-.....| ..|...+++.+--...+| .++.++...
T Consensus 66 gv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v--~~~~~~~~~ 138 (549)
T PRK06457 66 SACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIGHDYFQ--EVNLTKLFDDVAVFNQIL--INPENAEYI 138 (549)
T ss_pred eEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhccceeEEEEe--CCHHHHHHH
Confidence 45556668888764 66888999999999999865321110000111 224455555443344455 467788889
Q ss_pred HHHHHHHHHccCCCEEEEEE
Q 014288 298 AKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~~gP~lIe~~ 317 (427)
+++|++.+....||+.|++-
T Consensus 139 i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 139 IRRAIREAISKRGVAHINLP 158 (549)
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 99999988888899999994
No 159
>PRK07064 hypothetical protein; Provisional
Probab=92.78 E-value=0.75 Score=49.51 Aligned_cols=95 Identities=20% Similarity=0.143 Sum_probs=63.5
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-.-+.|||+|+-+-. ..+...........|...+++.+--...+|+ ++.++.+
T Consensus 68 ~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~ 142 (544)
T PRK07064 68 GVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVR--SAETALA 142 (544)
T ss_pred eEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeC--CHHHHHH
Confidence 45666668888874 6688889999999999986421 1111110000011355566665554556664 6778888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+.+|++.+..+ .||+.|++-
T Consensus 143 ~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 143 TIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred HHHHHHHHhccCCCCcEEEEeC
Confidence 999999998887 799999994
No 160
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.71 E-value=0.65 Score=48.01 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEE-EeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLA-FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDP 270 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~-~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~ 270 (427)
++..|+|+++| +.++++ ..|-|=..| .|.+.+++-..+|+++++.+-. =+.+.+......+.
T Consensus 59 A~~~a~GAs~a-------------G~Ra~taTSg~G~~lm---~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~ 122 (375)
T PRK09627 59 GISVALGASMS-------------GVKSMTASSGPGISLK---AEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDV 122 (375)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCCchHHHH---hhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHH
Confidence 47789999998 333444 445555445 8899999999999888877753 12333332221222
Q ss_pred hhhcccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 014288 271 QIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 326 (427)
Q Consensus 271 d~~~~a~a~G-~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 326 (427)
...+...+| .+.+.+...|+.++++....|++.+.+..-|++|-... +. +|+.
T Consensus 123 -~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~ 176 (375)
T PRK09627 123 -NQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMY 176 (375)
T ss_pred -HHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCe
Confidence 222333333 34456777899999999999999999999999998877 33 6653
No 161
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.50 E-value=1 Score=49.02 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=62.3
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCchhhcccccCCCcEEEEeCCCHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 295 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~ 295 (427)
-.++++..|=|.++. .-+|..|-..+.|||+|.-.-. ..++.. ..| ..|...+++.+--...+| .++.++.
T Consensus 65 ~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-~~Q--~~d~~~l~~~vtk~~~~v--~~~~~~~ 136 (579)
T TIGR03457 65 MSMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-GFQ--EADQLPMFQEFTKYQGHV--RHPSRMA 136 (579)
T ss_pred CEEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCCC-CCc--ccchhhhhhcceeEEEec--CCHHHHH
Confidence 345556668888874 5688899999999999974211 111110 011 124455555554444555 4777888
Q ss_pred HHHHHHHHHHHccCCCEEEEEE
Q 014288 296 EVAKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 296 ~a~~~A~~~ar~~~gP~lIe~~ 317 (427)
+.+++|++.+..++||+.|++-
T Consensus 137 ~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 137 EVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 9999999999998899999994
No 162
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.39 E-value=0.95 Score=49.22 Aligned_cols=94 Identities=16% Similarity=0.021 Sum_probs=63.2
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
-.++++..|=|+++. .-+|..|-..++|||+|+-.-..........| ..|...+++.+--...+|+ +++++.+
T Consensus 75 ~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q--~~d~~~l~~~vtk~~~~v~--~~~~~~~ 147 (578)
T PRK06112 75 VAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDRNAFQ--ELDHIALFQSCTKWVRRVT--VAERIDD 147 (578)
T ss_pred CEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCCcc--ccChhhhhccccceEEEeC--CHHHHHH
Confidence 345566668887764 66788899999999999854221110000111 2355566666655556664 6778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+.+|++.++.+ .||+.|++-
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 148 YVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEcC
Confidence 999999998887 499999994
No 163
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.37 E-value=0.98 Score=49.12 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=64.9
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
-.++++..|=|.++. .-++..|-..+.|||+|+-.-....-. .......|...+++.+--...+|+ +++++..
T Consensus 68 ~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (574)
T PRK07979 68 VGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKHSFLVK--QTEDIPQ 140 (574)
T ss_pred ceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccceEEEeC--CHHHHHH
Confidence 346666678888764 567888999999999998643211100 111112355566666655566664 7889999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 014288 297 VAKEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 297 a~~~A~~~ar~~~-gP~lIe~~t 318 (427)
.+++|++.+..+. ||+.|++-.
T Consensus 141 ~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 141 VLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred HHHHHHHHHccCCCCcEEEEcCh
Confidence 9999999998874 999999943
No 164
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.24 E-value=1.2 Score=48.37 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=63.5
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccc-cccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~i-s~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-..+.|||+|+-.-.... ..... .....|...+++.+--...+|+ ++.++.+
T Consensus 74 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~-~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~ 147 (569)
T PRK09259 74 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQG-DYEELDQLNAAKPFCKAAFRVN--RAEDIGI 147 (569)
T ss_pred EEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCC-CccccchhhhhhhheeeeEEcC--CHHHHHH
Confidence 45556668888774 6688899999999999986432111 00000 0112355556665555556664 6789999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+.+|++.|..+ .||+.|++-
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 148 GVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred HHHHHHHHhhhCCCCcEEEEeC
Confidence 999999999886 589999984
No 165
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.18 E-value=1.1 Score=48.66 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=64.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-.-+.|||+|+-.-....-.....| ..|...+++.+--...+|+ ++.++.+.
T Consensus 69 gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~itk~s~~v~--~~~~~~~~ 141 (574)
T PRK06466 69 GVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQ--ETDMVGISRPIVKHSFMVK--HASEIPEI 141 (574)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhhccceeEEEcC--CHHHHHHH
Confidence 45666668888874 66888999999999999864332111000111 2355556666555555665 67889899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+++|+..|+.+ .||+.|++-.
T Consensus 142 ~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 142 IKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred HHHHHHHHhcCCCCcEEEEcCH
Confidence 99999999887 4999999944
No 166
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.16 E-value=1.1 Score=48.90 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=64.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|||+|+-.-....- ........|...+++.+--...+|+ ++.++.+.
T Consensus 79 gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~itk~~~~v~--~~~~i~~~ 151 (570)
T PRK06725 79 GVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLI--GKDGFQEADVVGITVPVTKHNYQVR--DVNQLSRI 151 (570)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCcccc--cCCCCcccchhhhhhccceeEEEcC--CHHHHHHH
Confidence 45666678888764 56788888999999999854321110 0011112355666666655566664 67899999
Q ss_pred HHHHHHHHHccC-CCEEEEEEE
Q 014288 298 AKEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~~-gP~lIe~~t 318 (427)
+++|+..++.++ ||+.|++-.
T Consensus 152 l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 152 VQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHHHhcCCCCcEEEcccc
Confidence 999999998874 999999843
No 167
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.14 E-value=1.1 Score=49.14 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=61.9
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. ..+|-.|..-+.|||+|+-+-.. .++.. ..| ..|...+++.+--...+|+ +++++.+
T Consensus 87 gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-~~Q--e~d~~~~~~~vtk~~~~v~--~~~~i~~ 158 (616)
T PRK07418 87 GVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGTD-AFQ--ETDIFGITLPIVKHSYVVR--DPSDMAR 158 (616)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC-Ccc--cccHHHHhhhcceeEEEeC--CHHHHHH
Confidence 45555668888874 66888999999999999864321 11110 011 2344555554443444564 7789999
Q ss_pred HHHHHHHHHHccC-CCEEEEEE
Q 014288 297 VAKEAIERARRGE-GPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~~-gP~lIe~~ 317 (427)
++.+|++.|..++ ||++|++-
T Consensus 159 ~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 159 IVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred HHHHHHHHHhcCCCCcEEEecc
Confidence 9999999998876 99999984
No 168
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.14 E-value=0.73 Score=50.15 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEE-eCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccc--cccccccC
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSD 269 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~--~~~~~~~~ 269 (427)
++.+|+|+++| +.++++. .|-|=.-| .|.|.+|.-..+|+|+++.|.. +.++ ++.....+
T Consensus 249 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm---~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D 311 (562)
T TIGR03710 249 AINMAIGASYA-------------GARAMTATSGPGFALM---TEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSD 311 (562)
T ss_pred HHHHHHhHHhc-------------CCceeecCCCCChhHh---HHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHH
Confidence 46788999998 3344444 44443334 8999999999999888888776 4544 22221111
Q ss_pred chhhcccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 014288 270 PQIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 270 ~d~~~~a~a~G-~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
. +..+.-++| .+.+.+...|+.++++.+..|++.+.+..-|+++-...+.
T Consensus 312 ~-~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 312 L-LFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred H-HHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 1 222333322 3445666779999999999999999999999999988874
No 169
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.13 E-value=1.1 Score=48.69 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=60.3
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 298 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~ 298 (427)
++++..|=|.++. .-++..|...+.|||+|.-.-....-.....| ..|...+++.+--...+|+ ++.++...+
T Consensus 79 v~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~~i 151 (564)
T PRK08155 79 VCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGTDAFQ--EVDTYGISIPITKHNYLVR--DIEELPQVI 151 (564)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccCCCcc--ccchhhhhhccceEEEEcC--CHHHHHHHH
Confidence 4445558888764 66888899999999999854321110000011 1244445554444455564 788999999
Q ss_pred HHHHHHHHcc-CCCEEEEEE
Q 014288 299 KEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 299 ~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+|++.++.+ .||+.|++-
T Consensus 152 ~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 152 SDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHhcCCCCcEEEEcC
Confidence 9999999887 499999994
No 170
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=92.05 E-value=0.67 Score=47.69 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=72.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCCccccccccccc
Q 014288 189 FIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT 267 (427)
Q Consensus 189 ~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~ 267 (427)
.=|.++++|.|+.+| .+++.++++=-.++. .-....+|.....+++|++++|---++ .+....-|.
T Consensus 34 ~E~~av~iaaG~~la------------tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh 100 (361)
T TIGR03297 34 NEGAAVGLAAGAYLA------------TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQH 100 (361)
T ss_pred CchHHHHHHHHHHHh------------cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchh
Confidence 347789999999998 344455554222221 101133333356789999999876652 222211121
Q ss_pred --cCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 268 --SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 268 --~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
...-..++.+++|+++..++. +.++..+.+..|++++.+.++|+.|-+
T Consensus 101 ~~~G~~t~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 101 VKQGRITLSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred hHHhHHHHHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 122334567789999999953 455777889999999999999998877
No 171
>PRK07524 hypothetical protein; Provisional
Probab=91.92 E-value=1.3 Score=47.57 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=64.5
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-..+.|||+|+-.... ..+..........|...+++.+-....+|+ ++.++.+
T Consensus 66 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (535)
T PRK07524 66 GVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPE 140 (535)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHH
Confidence 45666668888764 66888999999999999864321 111100000111355566666665566664 6789999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+.+|++.++.+ .||+.|++-
T Consensus 141 ~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 141 VLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred HHHHHHHHHhcCCCCcEEEEeC
Confidence 999999999876 699999994
No 172
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=91.87 E-value=1.3 Score=48.64 Aligned_cols=94 Identities=26% Similarity=0.271 Sum_probs=63.3
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchhhcccccCCCcEEEEeCCCHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 295 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~ 295 (427)
-.++++..|=|.++. .-++..|-.-+.|+|+|+-.-... ++. ......|...+++.+--...+|+ ++.++.
T Consensus 95 ~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~---~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~ 166 (612)
T PRK07789 95 VGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGT---DAFQEADIVGITMPITKHNFLVT--DADDIP 166 (612)
T ss_pred CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CcCcccchhhhhhcceeEEEEcC--CHHHHH
Confidence 345666668888764 667888899999999998543211 111 11112355556665544455664 778999
Q ss_pred HHHHHHHHHHHcc-CCCEEEEEEE
Q 014288 296 EVAKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 296 ~a~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+.+.+|+..++.+ .||++|++-.
T Consensus 167 ~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 167 RVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcc
Confidence 9999999998876 5999999953
No 173
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=91.84 E-value=1.4 Score=47.76 Aligned_cols=92 Identities=16% Similarity=0.088 Sum_probs=62.4
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 298 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~ 298 (427)
++++..|=|.++. .-++..|-..+.|||+|.-.-....-.....| ..|...+++.+--...+| .+++++.+.+
T Consensus 71 v~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~i~~~~tk~~~~v--~~~~~~~~~l 143 (572)
T PRK06456 71 VCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMGKMAFQ--EADAMGVFENVTKYVIGI--KRIDEIPQWI 143 (572)
T ss_pred EEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccCCCCcc--ccchhhhhhccceeEEEe--CCHHHHHHHH
Confidence 4444568888874 66888999999999999854321111000111 134555666655555666 4778888999
Q ss_pred HHHHHHHHccC-CCEEEEEE
Q 014288 299 KEAIERARRGE-GPTLVECE 317 (427)
Q Consensus 299 ~~A~~~ar~~~-gP~lIe~~ 317 (427)
.+|++.++.++ ||+.|++-
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 144 KNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred HHHHHHHhcCCCCcEEEecC
Confidence 99999998865 99999994
No 174
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.83 E-value=1.3 Score=48.40 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=61.1
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-..+.|||+|+-.-.. .++.. ..| ..|...+++.+--...+| .++.++.+
T Consensus 70 gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~i--~~~~~~~~ 141 (588)
T PRK07525 70 GMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMTKYQEEV--RDPSRMAE 141 (588)
T ss_pred EEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhheeEEEEC--CCHHHHHH
Confidence 45666668888764 56788888999999999832110 11110 011 124445555543344455 46778889
Q ss_pred HHHHHHHHHHccCCCEEEEEE
Q 014288 297 VAKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~~gP~lIe~~ 317 (427)
.+.+|++.++.+.||+.|++-
T Consensus 142 ~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 142 VLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred HHHHHHHHHhcCCCCEEEEcC
Confidence 999999999999999999994
No 175
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=91.76 E-value=1.5 Score=47.37 Aligned_cols=93 Identities=27% Similarity=0.283 Sum_probs=63.7
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 295 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~ 295 (427)
-.++++..|=|.++. .-++..|-.-+.|||+|.-.-.. .++.. ..| ..|...+++.+--...+|+ ++.++.
T Consensus 64 ~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~ 135 (548)
T PRK08978 64 VGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTD-AFQ--EIDVLGLSLACTKHSFLVQ--SLEELP 135 (548)
T ss_pred CEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhccccCceeeEEEEC--CHHHHH
Confidence 345566668888764 67888999999999999864321 11111 111 2355556666555566674 778899
Q ss_pred HHHHHHHHHHHcc-CCCEEEEEE
Q 014288 296 EVAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 296 ~a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
..+.+|++.+..+ .||+.|++-
T Consensus 136 ~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 136 EIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred HHHHHHHHHHhcCCCCcEEEecC
Confidence 9999999988886 499999984
No 176
>PRK07586 hypothetical protein; Validated
Probab=91.75 E-value=1.3 Score=47.39 Aligned_cols=94 Identities=19% Similarity=0.089 Sum_probs=62.7
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.+|. ...+..|-.-+.|||+|+-+-..... .....-..|...+++.+--...+| .++.++.+.
T Consensus 66 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~vtk~~~~v--~~~~~~~~~ 138 (514)
T PRK07586 66 AATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYHR--KYDAPLTSDIEALARPVSGWVRRS--ESAADVAAD 138 (514)
T ss_pred EEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhcc--CCCcccccchhhhhccccceeeec--CCHHHHHHH
Confidence 44556668887753 56777899999999999865321110 000011235556666654445555 467788899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+++|++.++.+ .||++|++-.
T Consensus 139 i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 139 AAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHHhcCCCCcEEEEecc
Confidence 99999999987 6999999954
No 177
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.65 E-value=1.2 Score=48.74 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=62.4
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 298 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~ 298 (427)
++++..|=|.++. .-+|..|-..+.|||+|+-.-...... .......|...+++.+--...+|. ++.++.+.+
T Consensus 70 v~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~~i 142 (588)
T TIGR01504 70 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EAALVPRVL 142 (588)
T ss_pred EEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CHHHHHHHH
Confidence 3344458887764 567888999999999998543321111 011112355566666655556664 678999999
Q ss_pred HHHHHHHHccC-CCEEEEEEE
Q 014288 299 KEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 299 ~~A~~~ar~~~-gP~lIe~~t 318 (427)
++|++.++.++ ||++|++-.
T Consensus 143 ~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 143 QQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHccCCCCeEEEEeCc
Confidence 99999998864 899999944
No 178
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.48 E-value=1.3 Score=48.28 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=62.1
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 298 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~ 298 (427)
++++..|=|.+|. .-++..|-.-+.|+|+|.-+-..........| ..|...+++.+--...+| .++.++.+.+
T Consensus 71 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~d~~~l~~~itk~s~~v--~~~~~~~~~i 143 (591)
T PRK11269 71 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIESIAKPVTKWAVTV--REPALVPRVF 143 (591)
T ss_pred EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccChhhHhhcceeEEEEc--CCHHHHHHHH
Confidence 4455568888763 56788899999999999865432111111111 234555666554445556 4778899999
Q ss_pred HHHHHHHHccC-CCEEEEEEE
Q 014288 299 KEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 299 ~~A~~~ar~~~-gP~lIe~~t 318 (427)
++|++.++.++ ||+.|++-.
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 144 QQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred HHHHHHHhhCCCCeEEEEeCh
Confidence 99999998874 899999953
No 179
>PLN02470 acetolactate synthase
Probab=91.48 E-value=1.3 Score=48.33 Aligned_cols=94 Identities=27% Similarity=0.288 Sum_probs=63.0
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-.-+.|||+|.-.-.... .........|...+++.+--...+| .++.++.+.
T Consensus 78 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~i~~~ 150 (585)
T PLN02470 78 GVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRM--IGTDAFQETPIVEVTRSITKHNYLV--MDVEDIPRV 150 (585)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhh--cCCCcCcccchhhhhhhheEEEEEc--CCHHHHHHH
Confidence 45666678888764 6678889999999999975432110 0001111234445555554445566 478899999
Q ss_pred HHHHHHHHHccC-CCEEEEEEE
Q 014288 298 AKEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~~-gP~lIe~~t 318 (427)
+.+|++.+..++ ||+.|++-.
T Consensus 151 l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 151 IREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred HHHHHHHhcCCCCCeEEEEecC
Confidence 999999998875 999999953
No 180
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.44 E-value=1.4 Score=48.00 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=67.8
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCchhhcccccCCCcEEEEeCCCHHH
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK 293 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~a 293 (427)
+.-.+|++..|-|++|- ...|..|-.-+.|+|.|.-.=. ..++.. .....|...+++.+--..++|. ++++
T Consensus 63 GkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~~~~~g~~---afQe~D~~~l~~p~tk~~~~v~--~~~~ 134 (550)
T COG0028 63 GKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVPTSLIGTD---AFQEVDQVGLFRPITKYNFEVR--SPED 134 (550)
T ss_pred CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCccccccCcc---hhhhcchhhHhhhhheeEEEeC--CHHH
Confidence 34467888889999874 5678899999999998875211 011111 1112366666666655666775 6789
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEE
Q 014288 294 VREVAKEAIERARRGE-GPTLVECE 317 (427)
Q Consensus 294 v~~a~~~A~~~ar~~~-gP~lIe~~ 317 (427)
+-+.+++|++.|..++ ||++|++-
T Consensus 135 ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 135 IPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcC
Confidence 9999999999999887 99999983
No 181
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.41 E-value=1.8 Score=46.87 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=63.8
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-..+.|||+|+-.-... .+. ...| ..|...+++.+-....+|+ ++.++.+
T Consensus 66 gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~-~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~ 137 (558)
T TIGR00118 66 GVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGS-DAFQ--EADILGITMPITKHSFQVK--SAEDIPR 137 (558)
T ss_pred EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC-CCCc--ccChhhhhcCccceeEEeC--CHHHHHH
Confidence 45666668888764 668889999999999998542211 110 0011 2355566666666666774 6788989
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+.+|++.+..+ .||+.|++-
T Consensus 138 ~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 138 IIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred HHHHHHHHHhcCCCCeEEEEcC
Confidence 999999999887 489999994
No 182
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.27 E-value=1.3 Score=48.48 Aligned_cols=93 Identities=23% Similarity=0.201 Sum_probs=62.4
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.-....-.....| ..|...+++.+--...+| .++.++.+.
T Consensus 76 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v--~~~~~i~~~ 148 (595)
T PRK09107 76 GVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGSDAFQ--ECDTVGITRPCTKHNWLV--KDVNDLARV 148 (595)
T ss_pred EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCCCCCc--ccchhhhhhhheEEEEEe--CCHHHHHHH
Confidence 45666668888874 56788889999999999864431111000111 234445555544444556 477899999
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~ 317 (427)
+.+|++.++.+ .||+.|++-
T Consensus 149 l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 149 IHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred HHHHHHHhcCCCCceEEEecC
Confidence 99999999987 499999984
No 183
>PRK08266 hypothetical protein; Provisional
Probab=91.11 E-value=1.8 Score=46.68 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=62.9
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-.-+.|+|+|+-.=. +.+...........|...+++.+--...+|+ ++.++.+
T Consensus 70 ~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~ 144 (542)
T PRK08266 70 GVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIE--HPSEAPA 144 (542)
T ss_pred eEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeC--CHHHHHH
Confidence 34555568888874 6688899999999999985321 1111100000111355666666655566665 5678888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~t 318 (427)
.+++|++.+..+ .||+.|++-.
T Consensus 145 ~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 145 LVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred HHHHHHHHHhhCCCCcEEEEeCH
Confidence 999999888875 5999999954
No 184
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.07 E-value=1.6 Score=47.62 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=62.1
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|||+|+-.-.... .........|...+++.+--...+|+ ++.++...
T Consensus 65 gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~~ 137 (586)
T PRK06276 65 GVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKL--IGNDAFQEIDALGIFMPITKHNFQIK--KPEEIPEI 137 (586)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccc--cCCCCCccccHhhHHhhhcceEEecC--CHHHHHHH
Confidence 45566668888764 6788899999999999984322110 00000112345556665555555664 67788899
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~ 317 (427)
+.+|++.|..+ .||+.|++-
T Consensus 138 i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 138 FRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred HHHHHHHhcCCCCCcEEEEcC
Confidence 99999998887 489999995
No 185
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.06 E-value=1.7 Score=47.13 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=61.7
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++.-|-.-+.|||+|.-.-....-.....| ..|...+++.+--...+| .++.++.+.
T Consensus 80 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~~tk~~~~v--~~~~~~~~~ 152 (571)
T PRK07710 80 GVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIGSDAFQ--EADIMGITMPVTKHNYQV--RKASDLPRI 152 (571)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccCCCCcc--ccchhhhhhcccceEEec--CCHHHHHHH
Confidence 45555668887763 66788889999999999864432110000111 234455555544444555 467788899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+++|++.++.+ .||+.|++-.
T Consensus 153 i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 153 IKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred HHHHHHHHhcCCCCcEEEEcCh
Confidence 99999988887 4999999954
No 186
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.05 E-value=1.8 Score=46.95 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=63.1
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.-. ..+... ..| ..|...+++.+-....+|+ ++.++.+
T Consensus 75 gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~itk~s~~v~--~~~~~~~ 146 (566)
T PRK07282 75 GVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD-AFQ--EADIVGITMPITKYNYQIR--ETADIPR 146 (566)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC-Ccc--ccChhchhcCCCceeEEcC--CHHHHHH
Confidence 45666668888764 5678888899999999986532 111111 011 1244456665555555664 6778889
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 014288 297 VAKEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 297 a~~~A~~~ar~~~-gP~lIe~~t 318 (427)
.+.+|++.++.++ ||+.|++-.
T Consensus 147 ~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 147 IITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred HHHHHHHHHhcCCCCeEEEeCCh
Confidence 9999999998874 999999843
No 187
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=90.85 E-value=0.85 Score=43.96 Aligned_cols=111 Identities=22% Similarity=0.156 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccc--cccccccCc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDP 270 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~--~~~~~~~~~ 270 (427)
++..++|++++ ..+...+.-|-|=..+ .|.|.+++-.++|+|+++.|-. +-++ +.. ..-.
T Consensus 48 A~~~~~GAs~a------------G~ra~t~ts~~Gl~lm---~e~l~~a~~~~~P~V~~~~~R~-g~~~g~~~~--~~q~ 109 (230)
T PF01855_consen 48 AMEAAIGASAA------------GARAMTATSGPGLNLM---AEPLYWAAGTELPIVIVVVQRA-GPSPGLSTQ--PEQD 109 (230)
T ss_dssp HHHHHHHHHHT------------T--EEEEEECCHHHHH---CCCHHHHHHTT--EEEEEEEB----SSSB--S--B-SH
T ss_pred HHHHHHHHHhc------------CCceEEeecCCccccc---HhHHHHHHHcCCCEEEEEEECC-CCCCCCcCc--CChh
Confidence 46778888887 2333444455554333 5678999999999888887754 2221 111 1111
Q ss_pred hhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 271 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 271 d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
|+. .++-+||..+. ..++.++++-...|++.+.+..-|+++-...++. .|+
T Consensus 110 D~~-~~~d~~~~vl~--p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~ 160 (230)
T PF01855_consen 110 DLM-AARDSGWIVLA--PSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHS 160 (230)
T ss_dssp HHH-HTTTSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-
T ss_pred HHH-HHHhcCeEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCc
Confidence 221 22355666544 4688899999999999999999999998887765 354
No 188
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=90.53 E-value=1.9 Score=46.72 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.-..........| ..|...+++.+=-...+| .++.++.+.
T Consensus 73 gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~tk~~~~v--~~~~~~~~~ 145 (557)
T PRK08199 73 GICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFREREAFQ--EIDYRRMFGPMAKWVAEI--DDAARIPEL 145 (557)
T ss_pred EEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCccc--ccCHHHhhhhhhceeeec--CCHHHHHHH
Confidence 45566668888764 66888999999999999854221110000111 124445555443334455 578899999
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~ 317 (427)
+.+|++.+..+ .||+.|++-
T Consensus 146 ~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 146 VSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred HHHHHHHHhcCCCCcEEEEcC
Confidence 99999999887 499999984
No 189
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=90.47 E-value=2 Score=44.64 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchh
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 272 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~ 272 (427)
++.+|+|+++| +.++++.+-=++++- .+|.|.+|+-..+|+|+++.|-. ..++........|+
T Consensus 61 A~~~aiGAs~a-------------GaRa~TaTSg~Gl~l--m~E~l~~aa~~~lPiVi~~~~R~--~p~~~~~~~~q~D~ 123 (390)
T PRK08366 61 AMAACIGASAA-------------GARAFTATSAQGLAL--MHEMLHWAAGARLPIVMVDVNRA--MAPPWSVWDDQTDS 123 (390)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeCcccHHH--HhhHHHHHHhcCCCEEEEEeccC--CCCCCCCcchhhHH
Confidence 57889999998 444555554444432 28999999999999888887554 22222111111232
Q ss_pred hcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 014288 273 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323 (427)
Q Consensus 273 ~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 323 (427)
.. +.--|| +..-..|+.++++-...|++.+.+..-|+++-...++...
T Consensus 124 ~~-~~d~g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh 171 (390)
T PRK08366 124 LA-QRDTGW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSH 171 (390)
T ss_pred HH-HhhcCE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccc
Confidence 21 122255 4444578999999999999999999999999887776543
No 190
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.44 E-value=2.1 Score=46.44 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=62.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.-....-.....| ..|...+++.+--...+|. ++.++...
T Consensus 69 gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~s~~v~--~~~~~~~~ 141 (574)
T PRK06882 69 GCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTDAFQ--ECDMLGISRPVVKHSFIVK--NAEDIPST 141 (574)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccchhhhhhcccceEEEeC--CHHHHHHH
Confidence 45555668888764 56788899999999999854321110000111 2345556665554555664 77788889
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+.+|++.+..+ .||+.|++-.
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 142 IKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred HHHHHHHHhcCCCCCEEEecCH
Confidence 99999888876 5999999943
No 191
>PRK12474 hypothetical protein; Provisional
Probab=90.41 E-value=1.9 Score=46.18 Aligned_cols=94 Identities=18% Similarity=0.083 Sum_probs=61.6
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.+|. .-++..|-..+.|||+|+-............| ..|...+++.+--...+| .++.++.++
T Consensus 70 gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~vtk~~~~v--~~~~~~~~~ 142 (518)
T PRK12474 70 AVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQYDAPL--TSDIDGFARPVSRWVHRS--ASAGAVDSD 142 (518)
T ss_pred EEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCCCCcc--ccCHHHhhhcccceeeec--CCHHHHHHH
Confidence 45566668887763 56777888999999999864321110000011 135555666544334445 477889999
Q ss_pred HHHHHHHHHccC-CCEEEEEEE
Q 014288 298 AKEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~~-gP~lIe~~t 318 (427)
+++|++.+..++ ||++|++-.
T Consensus 143 i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 143 VARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred HHHHHHHHhcCCCCcEEEEech
Confidence 999999888875 999999943
No 192
>PRK08322 acetolactate synthase; Reviewed
Probab=90.38 E-value=2 Score=46.25 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=61.9
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|+|+|+-+-..........| ..|...+++.+--...+| .++.++.+.
T Consensus 65 gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v--~~~~~~~~~ 137 (547)
T PRK08322 65 GVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQ--IVDVVAMMAPLTKWTRQI--VSPDNIPEV 137 (547)
T ss_pred EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCCCccc--cccHHHHhhhheeEEEEe--CCHHHHHHH
Confidence 35555568888764 56888899999999999854321110000111 234555555544444556 477888899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+.+|++.+..+ .||+.|++-.
T Consensus 138 i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 138 VREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred HHHHHHHHccCCCCcEEEEcCh
Confidence 99999999886 4899999943
No 193
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.16 E-value=2.5 Score=45.88 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=58.6
Q ss_pred CceEEEE--eCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHH
Q 014288 217 DHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 294 (427)
Q Consensus 217 ~~~vv~~--~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av 294 (427)
++..+|+ .|=|.++. .-++..|..-+.|+|+|.-+-....-.....| ..+...+++.+-....+|+ ++.++
T Consensus 65 g~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q--~~d~~~l~~~itk~~~~v~--~~~~~ 137 (574)
T PRK09124 65 GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQ--ETHPQELFRECSHYCELVS--NPEQL 137 (574)
T ss_pred CCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCCcc--ccChhhhcccceeeeEEeC--CHHHH
Confidence 3345555 47777663 45678888999999999865321110000111 1244455554433344453 67788
Q ss_pred HHHHHHHHHHHHccCCCEEEEEE
Q 014288 295 REVAKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 295 ~~a~~~A~~~ar~~~gP~lIe~~ 317 (427)
.+.+.+|++.+....||+.|++-
T Consensus 138 ~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 138 PRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeC
Confidence 88888899888888899999983
No 194
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.04 E-value=2.1 Score=46.55 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=61.2
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.-..... ........|...+++.+--...+|+ +++++.+.
T Consensus 69 gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk~~~~v~--~~~~~~~~ 141 (572)
T PRK08979 69 GVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLI--GNDAFQECDMIGISRPVVKHSFLVK--DAEDIPEI 141 (572)
T ss_pred eEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhHHhhhceeEEEecC--CHHHHHHH
Confidence 34555568888764 56788888999999999753321110 0001112345555555544455664 77889999
Q ss_pred HHHHHHHHHccC-CCEEEEEE
Q 014288 298 AKEAIERARRGE-GPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~~-gP~lIe~~ 317 (427)
+++|++.|+.++ ||+.|++-
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 142 IKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHHhCCCCCcEEEecC
Confidence 999999998865 99999984
No 195
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=89.93 E-value=1.7 Score=38.93 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHH-HHHHcCCCeEEEEEcCCccc--cccccccccC
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAI--GMSHLRATSD 269 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn-~A~~~~LPvi~VV~NN~y~i--s~~~~~~~~~ 269 (427)
.++.|.|+|+. + .+++++.+ ..+..- .++.|. .++.+++|+++++...++.. ..+++. ..
T Consensus 51 ~vg~A~GlA~~-----------G-~~pi~~~~--~~f~~r-a~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~--~~ 113 (156)
T cd07033 51 MVGIAAGLALH-----------G-LKPFVSTF--SFFLQR-AYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ--GI 113 (156)
T ss_pred HHHHHHHHHHC-----------C-CeEEEEEC--HHHHHH-HHHHHHHHHhccCCCeEEEEECCcEecCCCCcccc--hH
Confidence 35567777765 2 44455555 444322 266665 89999999999988765444 222221 11
Q ss_pred chhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 270 PQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 270 ~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
.+++ ... .+|+++| .-.|+.++...++.|+ +.++|++|-+
T Consensus 114 ~~~a-~~~--~iPg~~v~~Ps~~~~~~~ll~~a~----~~~~P~~irl 154 (156)
T cd07033 114 EDIA-LLR--AIPNMTVLRPADANETAAALEAAL----EYDGPVYIRL 154 (156)
T ss_pred HHHH-Hhc--CCCCCEEEecCCHHHHHHHHHHHH----hCCCCEEEEe
Confidence 2222 222 4555543 3457777777666555 4567998854
No 196
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.84 E-value=2.8 Score=45.41 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=61.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-+|..|-.-+.|||+|.-.-.... .........|...+++.+--...+| .++.++.+.
T Consensus 72 ~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~itk~s~~v--~~~~~i~~~ 144 (561)
T PRK06048 72 GVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSM--IGNDAFQEADITGITMPITKHNYLV--QDAKDLPRI 144 (561)
T ss_pred eEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccc--cCCCCccccchhhhccCcceEEEEe--CCHHHHHHH
Confidence 45666668888864 6788889999999999974321110 0000111234555555554444556 467788899
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~ 317 (427)
+.+|++.++.+ .||+.|++-
T Consensus 145 i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 145 IKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHHhcCCCCeEEEecC
Confidence 99999988886 599999994
No 197
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=89.66 E-value=1.9 Score=46.62 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=60.9
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccc--cccccCc-hhhcccccCCCcEEEEeCCCHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRATSDP-QIYKKGPAFGMPGFHVDGMDVL 292 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~--~~~~~~~-d~~~~a~a~G~~~~~Vdg~D~~ 292 (427)
-.++++..|=|.++. .-++..|...+.|||+|.-+.... +.... ..+.... +...+++..--...+| .++.
T Consensus 64 ~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v--~~~~ 138 (535)
T TIGR03394 64 LGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVL--DDPA 138 (535)
T ss_pred ceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEe--CChH
Confidence 345666668888874 567888999999999998653211 11100 0111112 2344555443333445 3566
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 293 KVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 293 av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
++.+.+++|++.+....||++|++-.
T Consensus 139 ~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 139 TAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred HhHHHHHHHHHHHHHCCCCEEEEech
Confidence 77788888888888888999999954
No 198
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.65 E-value=2.6 Score=45.77 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
-.++++..|=|.++. .-++..|-..+.|||+|.-.=.... .........|...+++.+--...+| ++++++.+
T Consensus 67 ~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~ 139 (563)
T PRK08527 67 VGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSL--IGTDAFQEIDAVGISRPCVKHNYLV--KSIEELPR 139 (563)
T ss_pred CEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhhhhhcccceEEEc--CCHHHHHH
Confidence 345666668888874 6678888999999999974221000 0000011134444555554444455 57889999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 014288 297 VAKEAIERARRGE-GPTLVECET 318 (427)
Q Consensus 297 a~~~A~~~ar~~~-gP~lIe~~t 318 (427)
++++|++.++.++ ||+.|++-.
T Consensus 140 ~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 140 ILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred HHHHHHHHHhcCCCCcEEEEcCH
Confidence 9999999998865 899999843
No 199
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=89.57 E-value=2 Score=47.06 Aligned_cols=93 Identities=20% Similarity=0.121 Sum_probs=60.8
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCC-CcEEEEeCCCHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVR 295 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G-~~~~~Vdg~D~~av~ 295 (427)
.++++..|=|.++. .-++..|-.-+.|||+|+-.=.. ..+. ......|..++++.+- ....+|+ +++++.
T Consensus 69 gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~vt~k~~~~v~--~~~~~~ 140 (597)
T PRK08273 69 GVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAALGG---HYQQEVDLQSLFKDVAGAFVQMVT--VPEQLR 140 (597)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhcCC---CCCCccCHHHHHHHHHHHHeeEeC--CHHHHH
Confidence 45555668888874 56788889999999999843210 0110 0111234444555443 3344554 677888
Q ss_pred HHHHHHHHHHHccCCCEEEEEEE
Q 014288 296 EVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 296 ~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+.+.+|+..|..++||+.|++-.
T Consensus 141 ~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 141 HLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HHHHHHHHHHhhCCCCEEEEeCc
Confidence 99999999998888999999853
No 200
>PRK05858 hypothetical protein; Provisional
Probab=89.38 E-value=2.8 Score=45.22 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=61.1
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|..-+.|||+|.-+-... ++.. ..| ..|...+++.+--...+|+ ++..+.+
T Consensus 69 gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (542)
T PRK05858 69 GVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMG-SLQ--EIDHVPFVAPVTKFAATAQ--SAENAGR 140 (542)
T ss_pred eEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhhceEEEeC--CHHHHHH
Confidence 34455557777764 678889999999999887543211 1111 112 2345556666655556664 5778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+.+|+..+..+ .||+.|++-
T Consensus 141 ~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 141 LVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHHcCCCCCeEEEEcC
Confidence 999999888876 589999984
No 201
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.37 E-value=3.3 Score=45.25 Aligned_cols=93 Identities=27% Similarity=0.301 Sum_probs=61.4
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.=.. .++. ......|...+++.+--...+|. ++.++.+
T Consensus 86 gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~ 157 (587)
T PRK06965 86 GVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIGQ---DAFQECDTVGITRPIVKHNFLVK--DVRDLAE 157 (587)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCcccccHHHHhcCCcceeEEeC--CHHHHHH
Confidence 35555568887764 66788889999999999743110 0110 00112344555665555556664 6778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~t 318 (427)
.+.+|++.++.+ .||+.|++-.
T Consensus 158 ~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 158 TVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCh
Confidence 999999999887 4999999943
No 202
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=89.33 E-value=3.2 Score=45.22 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=60.7
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 295 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~ 295 (427)
-.++++..|=|.++- .-++..|-..+.|||+|+-.-.. ..+.. ..| ..|...+++.+--...+| .++.++.
T Consensus 64 ~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~id~~~~~~~vtk~~~~v--~~~~~~~ 135 (575)
T TIGR02720 64 IGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMD-TFQ--EMNENPIYADVAVYNRTA--MTAESLP 135 (575)
T ss_pred ceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC-Ccc--eechhhhhhhcceEEEEe--CCHHHHH
Confidence 345666668887763 66888899999999999865331 11111 011 123334444443333455 3567888
Q ss_pred HHHHHHHHHHHccCCCEEEEEEE
Q 014288 296 EVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 296 ~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+.+.+|+..+...+||+.|++-.
T Consensus 136 ~~i~~A~~~A~~~~GPV~l~iP~ 158 (575)
T TIGR02720 136 HVIDEAIRRAYAHNGVAVVTIPV 158 (575)
T ss_pred HHHHHHHHHHhhCCCCEEEEECc
Confidence 88888998888888999999953
No 203
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=89.21 E-value=3 Score=44.93 Aligned_cols=94 Identities=20% Similarity=0.069 Sum_probs=60.7
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
.++++..|=|.++. .-++..|...+.|+|+|+-.-...... .......|...+++.+--...++ .++.++.+.
T Consensus 63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~ 135 (539)
T TIGR02418 63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKYSAEV--QDPDALSEV 135 (539)
T ss_pred eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence 45566668888763 667888999999999998642211100 00111234445555443334445 477888899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 014288 298 AKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 298 ~~~A~~~ar~~-~gP~lIe~~t 318 (427)
+.+|++.+..+ .||+.|++-.
T Consensus 136 ~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 136 VANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred HHHHHHHHhcCCCCCEEEEcCh
Confidence 99999988876 4899999943
No 204
>PRK08617 acetolactate synthase; Reviewed
Probab=89.12 E-value=2.7 Score=45.38 Aligned_cols=93 Identities=19% Similarity=0.050 Sum_probs=61.9
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-++..|-.-+.|+|+|.-.... .++.. ..| ..|...+++.+--...+| .+++++..
T Consensus 69 gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v--~~~~~~~~ 140 (552)
T PRK08617 69 GVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKR-THQ--SMDNVALFRPITKYSAEV--QDPDNLSE 140 (552)
T ss_pred EEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCC-Ccc--ccchhhhhhhhcceEEEe--CCHHHHHH
Confidence 34555558888764 66788899999999999753221 11111 111 234455566555455566 47778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~t 318 (427)
.+.+|++.+..+ .||+.|++-.
T Consensus 141 ~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 141 VLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred HHHHHHHHHccCCCCcEEEeChh
Confidence 999999988886 4899999853
No 205
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=89.01 E-value=3 Score=45.47 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=60.9
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC-ccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.++++..|=|.++. .-+|..|-.-+.|||+|+-.-. +.++.. ..| ..|...+++.+--...+|+ +++++.+
T Consensus 78 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~i~~ 149 (585)
T CHL00099 78 GVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD-AFQ--EVDIFGITLPIVKHSYVVR--DARDISR 149 (585)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-Ccc--ccchhhhhcCceeEEEEeC--CHHHHHH
Confidence 45556668888764 5678889999999999985422 111111 011 1244455555544455664 6789999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 014288 297 VAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
.+++|++.++.+ .||+.|++-
T Consensus 150 ~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 150 IVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred HHHHHHHHHccCCCCeEEEecC
Confidence 999999988876 489999984
No 206
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=88.51 E-value=3.2 Score=44.66 Aligned_cols=95 Identities=15% Similarity=0.013 Sum_probs=60.3
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
-.++++..|=|.++. .-++..|-..+.|||+|+-.-.+........+ ...|...+++.+--...+| .++.++.+
T Consensus 74 ~~v~~vt~gpG~~N~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~~~~v--~~~~~~~~ 147 (530)
T PRK07092 74 AAFVNLHSAAGVGNA---MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKWSIEP--ARAEDVPA 147 (530)
T ss_pred ceEEEeccCchHHHH---HHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccceeec--CCHHHHHH
Confidence 344555567877743 67888999999999988754321110000001 1123344555543334455 56888889
Q ss_pred HHHHHHHHHHccC-CCEEEEEE
Q 014288 297 VAKEAIERARRGE-GPTLVECE 317 (427)
Q Consensus 297 a~~~A~~~ar~~~-gP~lIe~~ 317 (427)
.+.+|++.++.++ ||+.|++-
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 148 AIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred HHHHHHHHHhcCCCCcEEEEcc
Confidence 9999999998874 89999995
No 207
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=88.28 E-value=2.2 Score=46.42 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=62.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccc-ccc-----ccccccC-chhhcccccCCCcEEEEeCCC
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMS-----HLRATSD-PQIYKKGPAFGMPGFHVDGMD 290 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~i-s~~-----~~~~~~~-~d~~~~a~a~G~~~~~Vdg~D 290 (427)
.++++..|=|.++. .-+|..|-.-+.|||+|+-+-.... +.. ....... .|...+++.+--...+|+ +
T Consensus 77 gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~ 151 (569)
T PRK08327 77 QAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--R 151 (569)
T ss_pred eEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--C
Confidence 45566668888764 6688899999999999986533111 000 0000111 244555555444445564 6
Q ss_pred HHHHHHHHHHHHHHHHcc-CCCEEEEEE
Q 014288 291 VLKVREVAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 291 ~~av~~a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
++++..++.+|++.++.+ .||++|++-
T Consensus 152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 152 GDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 779999999999999876 699999984
No 208
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=87.85 E-value=4.6 Score=44.04 Aligned_cols=91 Identities=19% Similarity=0.091 Sum_probs=57.5
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 297 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a 297 (427)
+|++..|=|.++. .-++-.|-.-+.|||+|.-+-... ++. ...| ..+...+++.+--...+|+ ++.++.+.
T Consensus 69 v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~~~Q--e~d~~~l~~~~tk~~~~v~--~~~~~~~~ 140 (578)
T PRK06546 69 VCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGS-GFFQ--ETHPDRLFVECSGYCEMVS--SAEQAPRV 140 (578)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCC-CCcc--ccChhhhcccceeeEeEeC--CHHHHHHH
Confidence 3444457777763 457888889999999998532211 110 0011 1233444544433344553 67788889
Q ss_pred HHHHHHHHHccCCCEEEEEE
Q 014288 298 AKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 298 ~~~A~~~ar~~~gP~lIe~~ 317 (427)
+.+|++.+....||+.|++-
T Consensus 141 i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 141 LHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHhcCCCCEEEEcC
Confidence 99999999888899999984
No 209
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=87.60 E-value=4 Score=42.08 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=75.0
Q ss_pred cchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCch
Q 014288 192 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 271 (427)
Q Consensus 192 ~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d 271 (427)
.++..++|++++ .-+..-...|.|-..| +|.|.+|+-..+|+|+++.+.......... .....|
T Consensus 58 ~a~s~v~GA~~a------------Gar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~-~~dq~D 121 (365)
T COG0674 58 GAISAVIGASYA------------GARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPLPSTGLPI-KGDQSD 121 (365)
T ss_pred HHHHHHHHHHhh------------CcceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCcCCCcccc-cccHHH
Confidence 357888999988 2445666778887766 899999999999999998887622211101 111123
Q ss_pred hhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 014288 272 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 321 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 321 (427)
+... +--||+.+... ++.+.+...-.|...|.+..-|+++-..-++.
T Consensus 122 ~~~~-r~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~ 168 (365)
T COG0674 122 LMAA-RDTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA 168 (365)
T ss_pred HHHH-HccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchh
Confidence 2221 11277777665 77777777778888888888899887655543
No 210
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=86.96 E-value=3.8 Score=42.87 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEE-eCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d 271 (427)
++.+++|++++ +.++++. .|-|=.-| +|.|.+|+-..+|+|+++.+-+..-.++. .....|
T Consensus 68 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm---~E~l~~aa~~~~P~V~~~~~R~~~~~~~i--~~d~~D 129 (407)
T PRK09622 68 AMSACVGAAAA-------------GGRVATATSSQGLALM---VEVLYQASGMRLPIVLNLVNRALAAPLNV--NGDHSD 129 (407)
T ss_pred HHHHHHHHHhh-------------CcCEEeecCcchHHHH---hhHHHHHHHhhCCEEEEEeccccCCCcCC--CchHHH
Confidence 47788999988 3344444 44444334 89999999999998888888762211111 111123
Q ss_pred hhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEEEec
Q 014288 272 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYR 320 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~--~gP~lIe~~t~R 320 (427)
+.. ++.-| .+.+...++.++++-+..|++.+.+. .-|+++-...++
T Consensus 130 ~~~-~r~~g--~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 130 MYL-SRDSG--WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHH-HhcCC--eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 322 23334 44566678999999999999988776 789998887764
No 211
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=86.22 E-value=5.8 Score=41.31 Aligned_cols=111 Identities=20% Similarity=0.169 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEE-EEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTL-AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv-~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d 271 (427)
++.+++|++++ +.+++ +..|-|=.-| +|.|.+|+-..+|+++++.|-. ++.+........|
T Consensus 62 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm---~E~l~~aag~~lP~V~vv~~R~--~~~p~~i~~d~~D 123 (394)
T PRK08367 62 AISACVGASAA-------------GVRTFTATASQGLALM---HEVLFIAAGMRLPIVMAIGNRA--LSAPINIWNDWQD 123 (394)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeccchHHHH---hhHHHHHHHccCCEEEEECCCC--CCCCCCcCcchHH
Confidence 57788999988 33444 4445554444 8999999999999998886653 3333221111112
Q ss_pred hhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEEEecCCCCC
Q 014288 272 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHS 325 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~--~~gP~lIe~~t~R~~gHs 325 (427)
+. -.+-.||-.+. ..|+.++++-...|++.+.+ ..-|+++-...+|. +|.
T Consensus 124 ~~-~~rd~g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 124 TI-SQRDTGWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HH-hccccCeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 21 22334554443 47889999988899998884 44799999988875 453
No 212
>PLN02573 pyruvate decarboxylase
Probab=86.04 E-value=5.3 Score=43.58 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=60.3
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccc-cccc--cccc--c-CchhhcccccCCCcEEEEeCCC
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSH--LRAT--S-DPQIYKKGPAFGMPGFHVDGMD 290 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~i-s~~~--~~~~--~-~~d~~~~a~a~G~~~~~Vdg~D 290 (427)
-.++++..|=|.++. .-.+..|-.-+.|||+|+-.-.... +... +... . ..+....++.+-....+|. +
T Consensus 79 ~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~--~ 153 (578)
T PLN02573 79 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN--N 153 (578)
T ss_pred CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC--C
Confidence 456677778888763 5577788899999999986433111 1000 0000 0 0111233444433444553 6
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 291 VLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 291 ~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+.++.+.+++|++.|+.+.||+.|++-.
T Consensus 154 ~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 154 LEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 7788888999999999888999999943
No 213
>PRK06154 hypothetical protein; Provisional
Probab=85.36 E-value=4.6 Score=43.91 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHH
Q 014288 220 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAK 299 (427)
Q Consensus 220 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~ 299 (427)
+++..|=|.++. .-++..|..-+.|||+|+-...... .......+...+++.+--...+| .++.++.+.+.
T Consensus 85 ~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~----~~~~~~~d~~~~~~~vtk~~~~v--~~~~~~~~~i~ 155 (565)
T PRK06154 85 FAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGS----TDVAPNFESLRNYRHITKWCEQV--TLPDEVPELMR 155 (565)
T ss_pred EEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccc----ccCCCCcchhhhHhhcceeEEEC--CCHHHHHHHHH
Confidence 334458887764 6688899999999999985432111 00111123334444443334455 46788889999
Q ss_pred HHHHHHHcc-CCCEEEEEEE
Q 014288 300 EAIERARRG-EGPTLVECET 318 (427)
Q Consensus 300 ~A~~~ar~~-~gP~lIe~~t 318 (427)
+|++.++.+ .||++|++-.
T Consensus 156 ~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 156 RAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHhcCCCceEEEecch
Confidence 999999885 5999999853
No 214
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=84.76 E-value=2.8 Score=43.91 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=57.2
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchhhcccccCCCcEEEEeCCC----HH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----VL 292 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D----~~ 292 (427)
.++++..|=|.++. .-++..|-.-+.|||+|+-.-... .+.. ..| ..|..++++.+--...+|...+ +.
T Consensus 65 gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~~~~~~~~~~ 138 (432)
T TIGR00173 65 VAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRGCG-ANQ--TIDQPGLFGSYVRWSLDLPLPEADEPLA 138 (432)
T ss_pred EEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhCCC-CCc--ccchhhHHhhccceeeeCCCCCccccHH
Confidence 45566668887764 567888889999999997543211 1110 011 1234444444443444553222 12
Q ss_pred HHHHHHHHHHHHHHcc-CCCEEEEEEE
Q 014288 293 KVREVAKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 293 av~~a~~~A~~~ar~~-~gP~lIe~~t 318 (427)
.+.+.+.+|++.+..+ .||+.|++-.
T Consensus 139 ~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 139 YLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 3667788898888875 4899999953
No 215
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=82.71 E-value=8.4 Score=40.40 Aligned_cols=93 Identities=28% Similarity=0.260 Sum_probs=59.8
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEc-CCccccccccccccCchhhcccccCC-CcEEEEeCCCHH
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN-NLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVL 292 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~N-N~y~is~~~~~~~~~~d~~~~a~a~G-~~~~~Vdg~D~~ 292 (427)
+...+|++..|-|+++- ..-|.-|-.-+.|+|.+--- -.-+|++. .....|+..+.+++- |.+. | .|++
T Consensus 153 gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvftGQVptsaIGtD---AFQEadiVgisRScTKwNvm-V--kdVe 223 (675)
T KOG4166|consen 153 GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFTGQVPTSAIGTD---AFQEADIVGISRSCTKWNVM-V--KDVE 223 (675)
T ss_pred CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEecccchhhcccc---hhccCCeeeeeeccceehee-e--ecHH
Confidence 35578999999999874 33566677788996655311 11133332 122234555555542 3333 2 4788
Q ss_pred HHHHHHHHHHHHHHcc-CCCEEEEE
Q 014288 293 KVREVAKEAIERARRG-EGPTLVEC 316 (427)
Q Consensus 293 av~~a~~~A~~~ar~~-~gP~lIe~ 316 (427)
++-.-+.+|++.|-.+ .||+|+++
T Consensus 224 dlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 224 DLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred HhhHHHHHHhhhhccCCCCCeEeeC
Confidence 8888899999988776 58999988
No 216
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=82.52 E-value=20 Score=35.41 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred eEEEEeCCCc--ccCccHHHHHHHHHHcCCCeEEEEEcCC-cccccccc----ccccCc-hhhcccccCCCcEEEEeCCC
Q 014288 219 VTLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----RATSDP-QIYKKGPAFGMPGFHVDGMD 290 (427)
Q Consensus 219 ~vv~~~GDGa--~~~G~~~EaLn~A~~~~LPvi~VV~NN~-y~is~~~~----~~~~~~-d~~~~a~a~G~~~~~Vdg~D 290 (427)
.++.++.||. .++|..-..+.-|...++-++||+.+|. ...|.--. ...... .+......|++|++.|= .|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7899999999 7888776778888899999888888764 12221100 000111 45566788999988664 47
Q ss_pred HHHHHHHHHHHHHH
Q 014288 291 VLKVREVAKEAIER 304 (427)
Q Consensus 291 ~~av~~a~~~A~~~ 304 (427)
+.++-+++..++++
T Consensus 245 ~~~lp~~l~~~lrq 258 (266)
T cd01460 245 LNQLPSVLSDALRQ 258 (266)
T ss_pred hhHhHHHHHHHHHH
Confidence 77887777777654
No 217
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=81.56 E-value=6.3 Score=35.98 Aligned_cols=99 Identities=23% Similarity=0.186 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHH-HHHHHc--------CCCeEEEEEcCCccccccc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALW--------KLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaL-n~A~~~--------~LPvi~VV~NN~y~is~~~ 263 (427)
.++.|.|+|+. +.++|+.+.=+.+..- .++-+ +-++.+ ++||++++..-+++...++
T Consensus 56 ~vg~AaGlA~~-------------G~~pi~~~~~a~Fl~r-a~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t 121 (167)
T cd07036 56 IVGLAVGAAMN-------------GLRPIVEIMFADFALP-AFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ 121 (167)
T ss_pred HHHHHHHHHHc-------------CCEEEEEeehHHHHHH-HHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh
Confidence 45666666665 3455554333333332 24444 444444 5999999865554332332
Q ss_pred cccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 264 LRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 264 ~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
.+..++ .+.+ .+|+++| .-.|+.+....++.++ +.++|++|-
T Consensus 122 ---hs~~~~-a~lr--~iPg~~V~~Psd~~e~~~~l~~~~----~~~~P~~~~ 164 (167)
T cd07036 122 ---HSQSLE-AWFA--HIPGLKVVAPSTPYDAKGLLKAAI----RDDDPVIFL 164 (167)
T ss_pred ---hhhhHH-HHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 122332 3333 4455543 2357777777555554 457899874
No 218
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=78.46 E-value=12 Score=41.00 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHH--HcCCCeEEEEEcCCccccccccccccCc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--LWKLPIVFVVENNLWAIGMSHLRATSDP 270 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~--~~~LPvi~VV~NN~y~is~~~~~~~~~~ 270 (427)
++.+|+|+++| ..+...+.-|-|=.-+ .|.|..++ ...+|+|+++-|.. +-+.....| .
T Consensus 58 a~~~~~GAs~a------------G~ra~t~ts~~Gl~~~---~e~l~~~~~~g~~~~iV~~~~~~~-gp~~~~~~q---~ 118 (595)
T TIGR03336 58 AVEVAAGAAWS------------GLRAFCTMKHVGLNVA---ADPLMTLAYTGVKGGLVVVVADDP-SMHSSQNEQ---D 118 (595)
T ss_pred HHHHHHHHHhc------------CcceEEEccCCchhhh---HHHhhhhhhhcCcCceEEEEccCC-CCccchhhH---h
Confidence 45688999988 2333444444443223 45555554 33677777777653 222111112 1
Q ss_pred hhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 271 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 271 d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
|.. .++..+|+ ..+-.++.++++....|++.+.+.+-|++|-... .-+|+
T Consensus 119 d~~-~~~~~~~~--vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~ 168 (595)
T TIGR03336 119 TRH-YAKFAKIP--CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHM 168 (595)
T ss_pred HHH-HHHhcCCe--EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccc
Confidence 221 33445777 4455678999999999999999999999998865 44554
No 219
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=78.19 E-value=12 Score=41.71 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=48.8
Q ss_pred cccCccHHHHHHHHHHcCCCeEEEEEcCCccccc--cccccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHH
Q 014288 228 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIER 304 (427)
Q Consensus 228 a~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~--~~~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ 304 (427)
.|.+ -.++.+.+++..++||++|....+++.+. +++ .+..+++- .+ .+|.++| .-.|..++..+++.+++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~-lr--~iPn~~v~~PaD~~E~~~~~~~a~~- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLAS-LR--AIPNLSVWRPCDGNETAAAWKYALE- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHH-Hh--cCCCCEEEeeCCHHHHHHHHHHHHh-
Confidence 4443 34778899999999999999877765543 222 12233322 22 4555543 23477777776665552
Q ss_pred HHccCCCEEEEE
Q 014288 305 ARRGEGPTLVEC 316 (427)
Q Consensus 305 ar~~~gP~lIe~ 316 (427)
..++|++|-.
T Consensus 503 --~~~gP~~irl 512 (653)
T TIGR00232 503 --SQDGPTALIL 512 (653)
T ss_pred --cCCCcEEEEE
Confidence 4578988854
No 220
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=78.08 E-value=6 Score=48.64 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcc-ccccccccccCchh
Q 014288 194 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQI 272 (427)
Q Consensus 194 lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~d~ 272 (427)
.-+|.|.|.+. +.-.+++|..|=|.+|. .-++..|..-+.|+|+|.-+-... .+.. ..|. .|.
T Consensus 352 afmAdGyAR~T----------gkpgV~i~TsGPG~tN~---l~av~eA~~d~vPlLvItgd~p~~~~~~g-a~Q~--iDq 415 (1655)
T PLN02980 352 AFHALGYARGS----------LKPAVVITSSGTAVSNL---LPAVVEASQDFVPLLLLTADRPPELQDAG-ANQA--INQ 415 (1655)
T ss_pred HHHHHHHHHHh----------CCCEEEEEeCcHHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhcCC-CCcc--cch
Confidence 34566666652 23345666668877764 778999999999999998764321 1111 1122 244
Q ss_pred hcccccCCCcEEEEeCCCHHH------HHHHHHHHHHHHHcc-CCCEEEEEE
Q 014288 273 YKKGPAFGMPGFHVDGMDVLK------VREVAKEAIERARRG-EGPTLVECE 317 (427)
Q Consensus 273 ~~~a~a~G~~~~~Vdg~D~~a------v~~a~~~A~~~ar~~-~gP~lIe~~ 317 (427)
..+++.+--...+|. ++.+ +.+++++|+..++.+ .||+.|++-
T Consensus 416 ~~lf~pvtK~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 416 VNHFGSFVRFFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred hhHHHhhhheeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 445555444455553 3333 346788888888887 499999996
No 221
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=77.92 E-value=13 Score=41.02 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccc-ccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is-~~~~~~~~~~d 271 (427)
.++.|.|+|+. .-++++++ =+.|.+-.+-+-.+-++..++||++++...++.-. .+++. ...|
T Consensus 364 ~vg~AaGlA~~------------G~~Pvv~~--~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~--~~~d 427 (617)
T TIGR00204 364 AVTFAAGMAIE------------GYKPFVAI--YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQ--GAFD 427 (617)
T ss_pred HHHHHHHHHHC------------CCEEEEEe--cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccc--cchH
Confidence 45667776654 23444444 44565432333446778999999999887764311 12211 1233
Q ss_pred hhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
++- --.+|+++| .-.|+.++...++.|++ ..++|++|-.
T Consensus 428 ia~---lr~iPgl~V~~Psd~~e~~~~l~~a~~---~~~~Pv~ir~ 467 (617)
T TIGR00204 428 ISY---LRCIPNMVIMAPSDENELRQMLYTGYH---YDDGPIAVRY 467 (617)
T ss_pred HHH---HhcCCCcEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 322 224566644 23477777776665542 2348998854
No 222
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=77.89 E-value=13 Score=33.85 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCC-CceEEEEeCCCccc-CccHHHHHH-HHHHcCCCeEEEEEcCCccccccccccccC
Q 014288 193 GIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCN-NGQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRATSD 269 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~-~~~vv~~~GDGa~~-~G~~~EaLn-~A~~~~LPvi~VV~NN~y~is~~~~~~~~~ 269 (427)
.++.|.|+|++ ++ ..+++..+++=... +-...+.+. .....++|+. |+..-+++.+..-....+.
T Consensus 60 ~vg~a~GlA~~-----------G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 60 MVGMAAGLALA-----------GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp HHHHHHHHHHH-----------SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSS
T ss_pred ccceeeeeeec-----------ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccc
Confidence 46778888887 42 34455555553320 012244444 7788999988 5555443333221111222
Q ss_pred chhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 270 PQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 270 ~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
.+. .... .+|+++| .-.|+.++...++.+++. +.++|++|-.
T Consensus 128 ~d~-~~~~--~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 128 EDE-AILR--SIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp SHH-HHHH--TSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred ccc-cccc--cccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 233 3333 3444433 345777877766666531 2679998865
No 223
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=76.31 E-value=5 Score=35.86 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCch
Q 014288 192 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 271 (427)
Q Consensus 192 ~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d 271 (427)
.+++++.|+.+| .++..+.+---|=-++=...++| -..+++|++.++.-.++-............-
T Consensus 53 eg~GIcAGa~lA------------Gkk~ailmQnsGlGNsiNal~SL--~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~ 118 (172)
T COG4032 53 EGVGICAGAYLA------------GKKPAILMQNSGLGNSINALASL--YVTYKIPLLMLASHRGVLKEGIEAQVPMGRA 118 (172)
T ss_pred cceeeehhhhhc------------CCCcEEEEeccCcchHHHHHHHH--HHHhccchhhhhhccchhhcCCccccccchh
Confidence 356678899998 23334444333322221123333 3479999988887766322221111112233
Q ss_pred hhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
.-++.+..++|.+++.+. ++-++.+..+...+.+...|+.+-+
T Consensus 119 ~~kiLe~~~lpt~t~~~p--~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 119 LPKILEGLELPTYTIIGP--EEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hHHHHhhcCCcccccCCH--HHHHHHHHHHHHHHHHcCCceEEEe
Confidence 455667789999998764 5667888889999988889987655
No 224
>PTZ00089 transketolase; Provisional
Probab=74.76 E-value=16 Score=40.60 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=54.1
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe-CCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~ 296 (427)
.++++.+. .|.+ -.++.+..++..++||+||+...+++.+..-....+..| ++---.+|.+.|= -.|..++..
T Consensus 429 ~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~ied---ia~lR~iPn~~V~~PaD~~E~~~ 502 (661)
T PTZ00089 429 IPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVET---LALLRATPNLLVIRPADGTETSG 502 (661)
T ss_pred eEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHH---HHHHhcCCCcEEEecCCHHHHHH
Confidence 45555553 5655 457789999999999999998877554331111112233 3322346665543 346667666
Q ss_pred HHHHHHHHHHccCCCEEEEE
Q 014288 297 VAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 297 a~~~A~~~ar~~~gP~lIe~ 316 (427)
+++.|++ ..++|+.|-.
T Consensus 503 ~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 503 AYALALA---NAKTPTILCL 519 (661)
T ss_pred HHHHHHH---cCCCCEEEEe
Confidence 5555542 4568998865
No 225
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=70.00 E-value=24 Score=38.01 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=49.8
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccc----cccc---cCchhhcccccCCCcEEEEeCCC
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH----LRAT---SDPQIYKKGPAFGMPGFHVDGMD 290 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~----~~~~---~~~d~~~~a~a~G~~~~~Vdg~D 290 (427)
.++++..|=|.++. .-++..|-.-+.|||+|+-.-... .... .... ...++.+.++..-.....++..
T Consensus 65 gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~- 139 (539)
T TIGR03393 65 AALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTA-AQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQ- 139 (539)
T ss_pred eEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcc-hhhcCceeeeecCCCchHHHHHHhhceEEEEEEeChh-
Confidence 45566679998874 457778899999999998533211 0000 0000 0011222332221112233322
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 291 VLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 291 ~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
++.+.+.+|++.|...+||++|++-.
T Consensus 140 --~~~~~i~~a~~~A~~~~gPv~l~iP~ 165 (539)
T TIGR03393 140 --NATAEIDRVITTALRERRPGYLMLPV 165 (539)
T ss_pred --hhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 33344555666666677999999954
No 226
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=68.86 E-value=33 Score=35.27 Aligned_cols=100 Identities=24% Similarity=0.183 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEe-CCCcccCccHHHHHHHHHHcC--------CCeEEEEEcCCccccccc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWK--------LPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~-GDGa~~~G~~~EaLn~A~~~~--------LPvi~VV~NN~y~is~~~ 263 (427)
.++.|.|+|++ ..++++++. .| +.+=.+-+-.+-++.++ +||+++..+ +...+.
T Consensus 86 ~vg~AaGlA~~------------G~~P~v~~~~~~--f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~-- 148 (356)
T PLN02683 86 FTGIGVGAAYA------------GLKPVVEFMTFN--FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGV-- 148 (356)
T ss_pred HHHHHHHHHHC------------CCEEEEEEehhh--HHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCC--
Confidence 46677777776 234444443 33 22222333456667666 999999877 533332
Q ss_pred cccccCchhhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 264 LRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 264 ~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
..+....+. ...+ .+|+++|= -.|+.++...++.|+ ..++|++|-.
T Consensus 149 G~tH~~~~~-a~lr--~iPnl~V~~Pad~~e~~~~l~~a~----~~~gPv~ir~ 195 (356)
T PLN02683 149 GAQHSQCFA-AWYS--SVPGLKVLAPYSSEDARGLLKAAI----RDPDPVVFLE 195 (356)
T ss_pred CCccccCHH-HHHh--cCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEEE
Confidence 111212222 3333 35555442 347777766555554 4578999853
No 227
>PLN02790 transketolase
Probab=68.65 E-value=28 Score=38.70 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCE
Q 014288 234 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPT 312 (427)
Q Consensus 234 ~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~ 312 (427)
..+++.+++..++||+||+...+.+.+..-....+ +.+++---.+|.+.|= -.|..++..+++.|++ ..++|+
T Consensus 432 ~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~---iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~---~~~gP~ 505 (654)
T PLN02790 432 MRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQP---IEHLASLRAMPNILMLRPADGNETAGAYKVAVT---NRKRPT 505 (654)
T ss_pred HHHHHHHHHhcCCCeEEEEECCceeecCCCCCccc---HHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHH---cCCCCE
Confidence 46788889999999999998877554321111112 3333333356666543 3466677665555543 246898
Q ss_pred EEEE
Q 014288 313 LVEC 316 (427)
Q Consensus 313 lIe~ 316 (427)
.|-.
T Consensus 506 ~irl 509 (654)
T PLN02790 506 VLAL 509 (654)
T ss_pred EEEe
Confidence 8865
No 228
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=67.43 E-value=25 Score=37.48 Aligned_cols=99 Identities=23% Similarity=0.184 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEe-CCCcccCccHHHHHHHHH--------HcCCCeEEEEEcCCccccccc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAA--------LWKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~-GDGa~~~G~~~EaLn~A~--------~~~LPvi~VV~NN~y~is~~~ 263 (427)
.+++|+|+|++ .-++++.++ .+-. +=.+-+-.|-++ .+++||+|+..|.++.....
T Consensus 201 ~vg~AaGlA~~------------G~rPiv~~~~~~f~--~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~- 265 (464)
T PRK11892 201 FAGIGVGAAFA------------GLKPIVEFMTFNFA--MQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA- 265 (464)
T ss_pred HHHHHHHHHhC------------CCEEEEEEehHHHH--HHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC-
Confidence 35677788876 234444443 2322 222344556667 89999999988766433222
Q ss_pred cccccCchhhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 264 LRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 264 ~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
+.+..++ ...+ .+|+++|= -.|+.+....++.|+ +.++|++|-
T Consensus 266 --hhs~~d~-a~~~--~iPgl~V~~P~d~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 266 --QHSQDYA-AWYS--HIPGLKVVAPYSAADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred --ccccCHH-HHHh--hCCCCEEEEeCCHHHHHHHHHHHh----hCCCcEEEE
Confidence 2222333 3333 45555442 346677766666554 457899873
No 229
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=67.07 E-value=29 Score=38.55 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHH-HHHHHcCCCeEEEEEcCCcc-ccccccccccCc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWA-IGMSHLRATSDP 270 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaL-n~A~~~~LPvi~VV~NN~y~-is~~~~~~~~~~ 270 (427)
.+++|.|+|+. .-+++++++. .|.+ -.++.+ +.++..++||+||+..-++. ...+++. ...
T Consensus 373 mvg~AaGlA~~------------G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~~ 435 (641)
T PRK12571 373 AVTFAAGLAAA------------GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GAF 435 (641)
T ss_pred HHHHHHHHHHC------------CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--ccH
Confidence 34566676654 2344555544 3554 335555 66889999999999666532 1112211 123
Q ss_pred hhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 271 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 271 d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
|++-+ -.+|++.| .-.|+.++..+++.|++ ..++|++|-.
T Consensus 436 dia~l---r~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 476 (641)
T PRK12571 436 DLAFL---TNLPNMTVMAPRDEAELRHMLRTAAA---HDDGPIAVRF 476 (641)
T ss_pred HHHHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 33222 24565544 23477777776666653 1479999855
No 230
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=66.36 E-value=22 Score=38.91 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchh
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 272 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~ 272 (427)
.++.|.|+|+. + -+++++.+.+ |.+-.+-+-.+-++..++||+|++..-++....+++. ...|+
T Consensus 332 ~v~~AaGlA~~-----------G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Di 395 (581)
T PRK12315 332 SVAFASGIAAN-----------G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDI 395 (581)
T ss_pred HHHHHHHHHHC-----------c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHH
Confidence 35566666654 2 3455555544 4332222344557889999999998665432223222 12333
Q ss_pred hcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 273 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 273 ~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
+-+ -.+|.++| .-.|+.++...++.|++ ..++|++|-.
T Consensus 396 a~l---r~iPnl~V~~P~d~~e~~~~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 396 PMI---SNIPNLVYLAPTTKEELIAMLEWALT---QHEHPVAIRV 434 (581)
T ss_pred HHH---hcCCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 222 24666655 34577777776665542 2368999865
No 231
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=66.10 E-value=32 Score=38.27 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccc-cccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~i-s~~~~~~~~~~d 271 (427)
.+++|.|+|+. .-+++++++ +.|.+-.+-+=.+.++..++||+|++...++.- ..+++. ...|
T Consensus 411 ~Vg~AaGLA~~------------G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~D 474 (641)
T PLN02234 411 AVTFAAGLACE------------GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFD 474 (641)
T ss_pred HHHHHHHHHHC------------CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHH
Confidence 34556666654 234455543 344443233444677899999999997776421 112211 1233
Q ss_pred hhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 014288 272 IYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 322 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 322 (427)
++- .-.+|++.|= -.|+.++...++.|+. ..++|++| ...|..
T Consensus 475 ia~---lr~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~Pv~i--r~~R~~ 518 (641)
T PLN02234 475 VTF---MACLPNMIVMAPSDEAELFNMVATAAA---IDDRPSCF--RYHRGN 518 (641)
T ss_pred HHH---HhcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCCEEE--Eeeccc
Confidence 322 2245555442 3477777766555432 33589988 444543
No 232
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=65.92 E-value=35 Score=37.37 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccc-ccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is-~~~~~~~~~~d 271 (427)
.+++|.|+|+. + -++++..+ ..|.+=.+-+-.+.++..++||++++...++... .+++. ...|
T Consensus 333 mvg~A~GlA~~-----------G-~~p~~~~f--~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~ed 396 (580)
T PRK05444 333 AVTFAAGLATE-----------G-LKPVVAIY--STFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFD 396 (580)
T ss_pred HHHHHHHHHHC-----------C-CeeEEEee--HHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHH
Confidence 34567777764 2 33444443 3454422233556678999999999986664221 11111 2233
Q ss_pred hhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
++-+. .+|++.| .-.|+.+...+++.|++ ..++|++|-.
T Consensus 397 ia~lr---~iP~l~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 436 (580)
T PRK05444 397 LSYLR---CIPNMVIMAPSDENELRQMLYTALA---YDDGPIAIRY 436 (580)
T ss_pred HHHHh---cCCCCEEEeeCCHHHHHHHHHHHHh---CCCCcEEEEe
Confidence 33222 4555543 33577777776666653 2368998855
No 233
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=65.54 E-value=25 Score=39.36 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCcccc-ccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is-~~~~~~~~~~d 271 (427)
.+++|.|+|+. .-+++++++. .|.+=.+-+-++-++..++||+|++...++... .+++. ...|
T Consensus 410 ~vg~AaGLA~~------------G~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~~D 473 (677)
T PLN02582 410 AVTFAAGLACE------------GLKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFD 473 (677)
T ss_pred HHHHHHHHHHC------------CCeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--ccHH
Confidence 45566666664 2455666543 454433344567778999999999987664221 12111 1233
Q ss_pred hhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
++-+ -.+|+++|= -.|+.++...++.|+. ..++|++|-.
T Consensus 474 ia~l---r~iPnl~V~~Psd~~E~~~~l~~al~---~~~gPv~IR~ 513 (677)
T PLN02582 474 VTYM---ACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 513 (677)
T ss_pred HHHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 3221 245555442 3467777776665543 2358998854
No 234
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=64.67 E-value=28 Score=31.15 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcC-CCeEEEEEc-CCccccccccccccCc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVEN-NLWAIGMSHLRATSDP 270 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LPvi~VV~N-N~y~is~~~~~~~~~~ 270 (427)
.++.|.|+|+. +. .++++++..-. .. ..+.+.+...++ .|+|+.+.. ..++...+++. +..
T Consensus 61 ~vg~a~GlA~~-----------G~-~pi~~~~~~f~-~~--a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~ 123 (168)
T smart00861 61 MVGFAAGLALA-----------GL-RPVVAIFFTFF-DR--AKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQE 123 (168)
T ss_pred HHHHHHHHHHc-----------CC-CcEEEeeHHHH-HH--HHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chh
Confidence 35566777766 33 55555554322 23 377888888887 555555533 33333222211 112
Q ss_pred hhhcccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 271 QIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 271 d~~~~a~a~G~~~~~-Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
++.- . -++|.+. +.-.|+.++...++.+++ ..++|++|-.
T Consensus 124 ~~~~-~--~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 124 DEAL-L--RAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred HHHH-H--hcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 2222 2 2555553 345678888887777762 3468977644
No 235
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=63.74 E-value=46 Score=39.67 Aligned_cols=113 Identities=18% Similarity=0.068 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchh
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 272 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~ 272 (427)
.+.+++|++.+ + -+...+..|.|=+.| +|.|-.++-..+|+|++|.+-.+.- ++......-.|+
T Consensus 63 A~~av~GA~~a-----------G-ara~T~TSs~GL~LM---~e~l~~~ag~~~P~Vi~va~R~~~~-~~~~i~~dh~Dv 126 (1165)
T TIGR02176 63 AAGAVHGALQT-----------G-ALTTTFTASQGLLLM---IPNMYKIAGELLPCVFHVSARAIAA-HALSIFGDHQDV 126 (1165)
T ss_pred HHHHHHhHhhc-----------C-CCEEEecChhHHHHH---HHHHHHHHhccCCEEEEEecCCCCC-CCCccCCCchHH
Confidence 45677887766 2 233344445554444 7788666666899888888754221 111100011232
Q ss_pred hcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 014288 273 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 273 ~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 325 (427)
..++.-|| +.+-..++.++++-...|...|.+.+.|+++-...+|. +|.
T Consensus 127 -~~~R~~G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 127 -MAARQTGF--AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred -HHhhcCCe--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 23355566 44445678888887778888887888898887766554 453
No 236
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=62.48 E-value=32 Score=38.63 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccc-cCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-SDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~-~~~d 271 (427)
.+..|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+||+..-+ +...-..+. ...|
T Consensus 435 aVt~AAGLA~~------------G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aG--lvg~DG~TH~g~~D 498 (701)
T PLN02225 435 AVTFSAGLSSG------------GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAG--LVGSDGPVQCGAFD 498 (701)
T ss_pred HHHHHHHHHHC------------CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCc--cCCCCCccccccHH
Confidence 45566666654 346677777 356554344555667899999999987654 322111111 2234
Q ss_pred hhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
++-+ -.+|.++|= -.|+.++...++.|+. ..++|++|-.
T Consensus 499 ia~l---r~IPnm~V~aPsD~~El~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 499 IAFM---SSLPNMIAMAPADEDELVNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 3222 245666543 3477777776655542 3468998855
No 237
>PRK12753 transketolase; Reviewed
Probab=60.06 E-value=55 Score=36.55 Aligned_cols=90 Identities=23% Similarity=0.121 Sum_probs=53.3
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe-CCCHHHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVRE 296 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~ 296 (427)
.++++.+. .|.+ -.++.+.+++..++||++|....+++++..-....+..| ++---.+|.+.|= -.|..++..
T Consensus 428 ~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~ied---la~lR~iPn~~v~~PaD~~E~~~ 501 (663)
T PRK12753 428 VPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQ---LASLRLTPNFSTWRPCDQVEAAV 501 (663)
T ss_pred eEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHH---HHHHhcCCCCEEEccCCHHHHHH
Confidence 34444442 5544 458899999999999999998887666432111112233 3333345655442 346667666
Q ss_pred HHHHHHHHHHccCCCEEEEE
Q 014288 297 VAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 297 a~~~A~~~ar~~~gP~lIe~ 316 (427)
+++.|++ ..++|+.|-+
T Consensus 502 ~~~~al~---~~~gP~~irl 518 (663)
T PRK12753 502 AWKLAIE---RHNGPTALIL 518 (663)
T ss_pred HHHHHHh---cCCCCEEEEe
Confidence 5555543 2478988765
No 238
>PRK05899 transketolase; Reviewed
Probab=58.88 E-value=45 Score=36.79 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHcCCCeEEEEEcCCcccc--ccccccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHcc-
Q 014288 233 QFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG- 308 (427)
Q Consensus 233 ~~~EaLn~A~~~~LPvi~VV~NN~y~is--~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~- 308 (427)
-.++.+.+++..++||++|....++..+ .+++ | ...|+ +---.+|+++| .-.|+.++...++.++ +.
T Consensus 405 r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~edi---a~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~ 475 (624)
T PRK05899 405 YARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVEQL---ASLRAIPNLTVIRPADANETAAAWKYAL----ERK 475 (624)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHHHH---HHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcC
Confidence 3577888889999999999988775443 2322 2 22232 22224555543 3457777777666554 44
Q ss_pred CCCEEEEE
Q 014288 309 EGPTLVEC 316 (427)
Q Consensus 309 ~gP~lIe~ 316 (427)
++|++|-.
T Consensus 476 ~~P~~ir~ 483 (624)
T PRK05899 476 DGPSALVL 483 (624)
T ss_pred CCCEEEEE
Confidence 68998876
No 239
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=56.93 E-value=43 Score=33.45 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCceEEEEeCCCcccCccHHHHHHHHHHcC-CC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeC
Q 014288 216 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 288 (427)
Q Consensus 216 ~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 288 (427)
+.+++|.+.|.|+. .++|-.+...+ +| |+.|+.||. +..++|+.+|+|.+.++-
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 45788888888776 55677776543 44 888888885 234778889999998763
No 240
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=55.80 E-value=32 Score=37.20 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=26.6
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEc
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 254 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~N 254 (427)
.++++..|=|.++. .-++..|-..+.|||+|.-.
T Consensus 74 ~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 74 VAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred EEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 45666668888774 66888999999999999754
No 241
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=54.62 E-value=51 Score=33.81 Aligned_cols=99 Identities=25% Similarity=0.211 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEE-eCCCcccCccHHHHHHHHHH--------cCCCeEEEEEcCCccccccc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAAL--------WKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~-~GDGa~~~G~~~EaLn~A~~--------~~LPvi~VV~NN~y~is~~~ 263 (427)
.++.|.|+|++ + .++++++ +.| |.+-.+-+-.+-++. +++|+|++.....++...++
T Consensus 94 ~vg~AaGlA~~-----------G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~t 159 (355)
T PTZ00182 94 FAGFAIGAAMN-----------G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAY 159 (355)
T ss_pred HHHHHHHHHhC-----------C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCc
Confidence 35667777775 2 3344443 343 333223333344554 35677766544444443443
Q ss_pred cccccCchhhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 264 LRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 264 ~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
+.+. +....+ .+|+++|= -.|+.++...++.++ +.++|++|-
T Consensus 160 Hs~~----~ea~lr--~iPn~~V~~Psd~~e~~~~l~~a~----~~~~P~~i~ 202 (355)
T PTZ00182 160 HSQS----FEAYFA--HVPGLKVVAPSDPEDAKGLLKAAI----RDPNPVVFF 202 (355)
T ss_pred ccch----HHHHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 3221 113333 45555442 346777777666554 457899773
No 242
>PRK12754 transketolase; Reviewed
Probab=53.82 E-value=79 Score=35.35 Aligned_cols=82 Identities=21% Similarity=0.159 Sum_probs=50.0
Q ss_pred cccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHH
Q 014288 228 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR 306 (427)
Q Consensus 228 a~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar 306 (427)
.|.. ...+.+.+++..++||++|....+++.+..-....+..| ++---.+|.+.| .-.|..++..+++.|++
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEd---la~lR~iPn~~V~~PaD~~E~~~~~~~a~~--- 508 (663)
T PRK12754 436 MFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQ---VASLRVTPNMSTWRPCDQVESAVAWKYGVE--- 508 (663)
T ss_pred HHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHH---HHHHhcCCCcEEecCCCHHHHHHHHHHHHh---
Confidence 4443 568899999999999999998887666432111112233 333334565544 33466677665555543
Q ss_pred ccCCCEEEEE
Q 014288 307 RGEGPTLVEC 316 (427)
Q Consensus 307 ~~~gP~lIe~ 316 (427)
..+||+.|-+
T Consensus 509 ~~~gP~yirl 518 (663)
T PRK12754 509 RQDGPTALIL 518 (663)
T ss_pred CCCCCEEEEe
Confidence 2368987655
No 243
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=52.72 E-value=37 Score=28.87 Aligned_cols=76 Identities=25% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEE--EeCCCH-HHHHHHHHHHHHHHHccCCC
Q 014288 235 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFH--VDGMDV-LKVREVAKEAIERARRGEGP 311 (427)
Q Consensus 235 ~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~--Vdg~D~-~av~~a~~~A~~~ar~~~gP 311 (427)
-+.+.-.+..|.-.|+ ||. .-+ ....+....++.+.+++.|+.+++ |.+.++ .+-.+++.++++ ...+|
T Consensus 17 ~~d~~~la~~GfktVI---nlR-pd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~P 88 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVI---NLR-PDG-EEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKP 88 (110)
T ss_dssp HHHHHHHHHCT--EEE---E-S--TT-STTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTS
T ss_pred HHHHHHHHHCCCcEEE---ECC-CCC-CCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCC
Confidence 4556666666665443 333 010 011122233566778889998875 444332 222233444443 45789
Q ss_pred EEEEEEE
Q 014288 312 TLVECET 318 (427)
Q Consensus 312 ~lIe~~t 318 (427)
+++.|.+
T Consensus 89 vl~hC~s 95 (110)
T PF04273_consen 89 VLAHCRS 95 (110)
T ss_dssp EEEE-SC
T ss_pred EEEECCC
Confidence 9999965
No 244
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=51.53 E-value=63 Score=32.07 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=38.7
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcC-CC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCC
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 289 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 289 (427)
.+.+++|...|-|+. .++|--+...+ +| |+.|+.||. +...+|+.+|+|++.++..
T Consensus 83 ~~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~~ 141 (280)
T TIGR00655 83 KLKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPAT 141 (280)
T ss_pred CCcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCCC
Confidence 345788888888776 55666665443 44 888888874 2334588899999988753
No 245
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=51.35 E-value=63 Score=32.72 Aligned_cols=63 Identities=24% Similarity=0.193 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 014288 245 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVECE 317 (427)
Q Consensus 245 ~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 317 (427)
++|+++...+-.++...+++.+. +..+.+ .+|+++|= -.|+.+....++.|+ +.++|++|-..
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r--~iP~l~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~ 173 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYS--HIPGLKVVAPYFAADCKGLLKTAI----RDPNPVIFLEN 173 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEEEc
Confidence 57777776553332222222121 213333 45665443 357777777666555 45789998543
No 246
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=50.11 E-value=84 Score=29.70 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=53.5
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcC-CC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 294 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av 294 (427)
+++|.+.|-|+- .|++--|..-+ +| |..|+.||. +-.-.++|+.+|++...++-.+.. -
T Consensus 2 ki~VlaSG~GSN-----lqaiida~~~~~~~a~i~~Visd~~------------~A~~lerA~~~gIpt~~~~~k~~~-~ 63 (200)
T COG0299 2 KIAVLASGNGSN-----LQAIIDAIKGGKLDAEIVAVISDKA------------DAYALERAAKAGIPTVVLDRKEFP-S 63 (200)
T ss_pred eEEEEEeCCccc-----HHHHHHHHhcCCCCcEEEEEEeCCC------------CCHHHHHHHHcCCCEEEeccccCC-C
Confidence 468888888876 55666666533 34 788887774 112456788899999887754321 2
Q ss_pred HHHHHHHHHHHHccCCCEEEEEEEe
Q 014288 295 REVAKEAIERARRGEGPTLVECETY 319 (427)
Q Consensus 295 ~~a~~~A~~~ar~~~gP~lIe~~t~ 319 (427)
.+++..++.......+|=+|-+-.|
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch
Confidence 2344455555556667877777544
No 247
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=49.72 E-value=74 Score=30.12 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=35.8
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcC-CC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCC
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 289 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 289 (427)
++|.+.|-|+. .+++--+...+ ++ +++||.||..+ ...++|+.+|++++..+..
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEeccc
Confidence 67888888875 45565555433 55 78888888611 2345777889999876543
No 248
>PRK11032 hypothetical protein; Provisional
Probab=48.80 E-value=63 Score=29.50 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhC
Q 014288 347 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES 386 (427)
Q Consensus 347 i~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~ 386 (427)
|...++++.+.|-+|.+|++.+.+-++..+++..+....+
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~ 69 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEES 69 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999998887754443
No 249
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.72 E-value=45 Score=29.12 Aligned_cols=45 Identities=31% Similarity=0.464 Sum_probs=27.4
Q ss_pred chhhcccccCCCcEEE--EeCC--CHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 270 PQIYKKGPAFGMPGFH--VDGM--DVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 270 ~d~~~~a~a~G~~~~~--Vdg~--D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
..+...++..|+.+.+ |-+. ...+| +++.+|++. .+||+|-.|++
T Consensus 48 ~~i~~aa~~aGl~y~~iPV~~~~iT~~dV-~~f~~Al~e---aegPVlayCrs 96 (130)
T COG3453 48 AAIAAAAEAAGLTYTHIPVTGGGITEADV-EAFQRALDE---AEGPVLAYCRS 96 (130)
T ss_pred HHHHHHHHhcCCceEEeecCCCCCCHHHH-HHHHHHHHH---hCCCEEeeecC
Confidence 4455566777877654 3332 33333 456666653 47999999954
No 250
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=47.49 E-value=72 Score=35.33 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 014288 234 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 313 (427)
Q Consensus 234 ~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~l 313 (427)
..-++.+|+..++|++||..-+.++.+-.--...+...++.+=.-.++.+++= .|..+...+.+.|+++ .++|++
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRP--ADANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEec--CChHHHHHHHHHHHhc---CCCCeE
Confidence 46689999999999999999998777642211123333433322235555532 2333555555555432 589998
Q ss_pred EEE
Q 014288 314 VEC 316 (427)
Q Consensus 314 Ie~ 316 (427)
|-.
T Consensus 516 Lil 518 (663)
T COG0021 516 LIL 518 (663)
T ss_pred EEE
Confidence 876
No 251
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=46.00 E-value=64 Score=32.38 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHH-HHHHcCCCeEEEEEcCCccccccccccccCch
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 271 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn-~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d 271 (427)
.++.|.|.|++ ...+.++-+ +.|.++-.||=+. ..+..+|||-+|+.+-+++.+..-..- .-
T Consensus 61 mvg~AAGLA~~------------Gk~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sH---q~ 123 (312)
T COG3958 61 MVGTAAGLALA------------GKKPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSH---QA 123 (312)
T ss_pred HHHHHHHHHhc------------CCCceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccc---hh
Confidence 45777777776 233444433 5666655566554 446788999999999886554321111 12
Q ss_pred hhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 272 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 272 ~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
+.++|---|+|-..| .-.|..+. +..+.++...+||+.+-.
T Consensus 124 ~EDiaimR~lpn~~V~~P~D~v~~----~~i~~~~~~~~GP~Y~Rl 165 (312)
T COG3958 124 LEDIAIMRGLPNMTVIAPADAVET----RAILDQIADYKGPVYMRL 165 (312)
T ss_pred HHHHHHHhcCCCceEEccCcHHHH----HHHHHHHHhcCCCEEEEe
Confidence 334443346665544 33465444 446666677899988754
No 252
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.97 E-value=88 Score=31.10 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHc---CCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeC
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALW---KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 288 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~---~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 288 (427)
.+.+++|+..|.|+. .++|--+... +..|+.|+.|+. +...+|+.+|+|++.++-
T Consensus 88 ~~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 88 ERKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred cCcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 456788888888665 5666655544 334888887774 334458889999998753
No 253
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=44.19 E-value=3e+02 Score=32.13 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCceEE--EEeCCCccc-CccHHHHHHH-HHHcCCC--eEEEEEcCCcccccccccc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDHVTL--AFFGDGTCN-NGQFFECLNM-AALWKLP--IVFVVENNLWAIGMSHLRA 266 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~~vv--~~~GDGa~~-~G~~~EaLn~-A~~~~LP--vi~VV~NN~y~is~~~~~~ 266 (427)
-++.++|++++ +++.+|| +-+||=+.. |-.+-+=++. +..|+.- +| +..-.+|....+.+.+
T Consensus 659 ~~G~~~G~a~~-----------g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv-~~~p~G~~g~g~~hsS 726 (929)
T TIGR00239 659 VLGFEYGYATT-----------SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLV-MLLPHGYEGQGPEHSS 726 (929)
T ss_pred HHHHHHhHHhc-----------CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeE-EEecCcCCCCCchhhc
Confidence 46778888887 6666544 455664421 1224455666 5677653 44 3344556655554433
Q ss_pred ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHH-HHHHHHccCCCEEEEEE--EecCC
Q 014288 267 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE-AIERARRGEGPTLVECE--TYRFR 322 (427)
Q Consensus 267 ~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~-A~~~ar~~~gP~lIe~~--t~R~~ 322 (427)
.+...+...+.--|+.++.. ..|.+....+++ |+ |..++|+++--. .||..
T Consensus 727 ~~~E~~lql~~~~gl~Vv~p--stpad~~~lLrrqa~---r~~~~Pvi~~~~K~L~r~~ 780 (929)
T TIGR00239 727 GRLERFLQLAAEQNMQVCVP--TTPAQVFHILRRQAL---RGMRRPLVVMSPKSLLRHP 780 (929)
T ss_pred cCHHHHHHHhCCCCCEEEec--CCHHHHHHHHHHHHH---hCCCCCEEEeccHhhhcCc
Confidence 33334444343345655544 356676666663 43 344889887553 35533
No 254
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=44.11 E-value=2.3e+02 Score=25.38 Aligned_cols=70 Identities=9% Similarity=0.074 Sum_probs=42.2
Q ss_pred ceEEEEeCCCcccCcc--H----HHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCH
Q 014288 218 HVTLAFFGDGTCNNGQ--F----FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 291 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~--~----~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~ 291 (427)
..+++++.||..+.|. . .+........+++++.|-... .. ....-+..+|+.-|..++.++..+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~------~~---~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEG------RP---VRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCC------Cc---cCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5789999999876542 1 333455566777775552211 00 0112356678888999999987765
Q ss_pred HHHHH
Q 014288 292 LKVRE 296 (427)
Q Consensus 292 ~av~~ 296 (427)
.++..
T Consensus 170 ~~~~~ 174 (178)
T cd01451 170 DAIAS 174 (178)
T ss_pred HHHHH
Confidence 54443
No 255
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=43.37 E-value=1.7e+02 Score=28.87 Aligned_cols=75 Identities=19% Similarity=0.153 Sum_probs=44.8
Q ss_pred CceEEEEeCCCccc----CccHHHHHHHHHHcCCC-eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCH
Q 014288 217 DHVTLAFFGDGTCN----NGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 291 (427)
Q Consensus 217 ~~~vv~~~GDGa~~----~G~~~EaLn~A~~~~LP-vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~ 291 (427)
...+++++-||=.+ .+...|++..|.....- +.++|.|=. ... ....-..++|..+|.++++++...-
T Consensus 177 ~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e------~~~-~~~g~~~~iA~~~Gg~~~~L~~l~~ 249 (261)
T COG1240 177 RRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTE------GSE-VRLGLAEEIARASGGEYYHLDDLSD 249 (261)
T ss_pred cceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecC------Ccc-ccccHHHHHHHHhCCeEEecccccc
Confidence 46788889999754 44457777777654433 333333321 000 1112245678889999999998766
Q ss_pred HHHHHHH
Q 014288 292 LKVREVA 298 (427)
Q Consensus 292 ~av~~a~ 298 (427)
..+..++
T Consensus 250 ~~i~~~~ 256 (261)
T COG1240 250 DSIVSAV 256 (261)
T ss_pred hHHHHHH
Confidence 6665543
No 256
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=42.93 E-value=84 Score=27.03 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=41.5
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
.+..++++.||.-+ +...+.+..+...+.++.+|.......- ...+..+++.-|..++.++. +..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~~-~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVDN-DPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE-S-SSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEecC-CHHHHHH
Confidence 56789999999766 3446677777767766555544332110 12456667777888888842 2345544
Q ss_pred HH
Q 014288 297 VA 298 (427)
Q Consensus 297 a~ 298 (427)
++
T Consensus 168 ~~ 169 (172)
T PF13519_consen 168 AF 169 (172)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 257
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=41.79 E-value=58 Score=26.28 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=32.2
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcc
Q 014288 353 YLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENV 398 (427)
Q Consensus 353 ~L~~~g~~t~ee~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~v 398 (427)
.|...|++|.+|+.+|-+..... +...+...+.+++.+.++
T Consensus 10 ~l~~~~lFt~~EI~~IvkkR~~f-----Ey~L~rr~~~~~Dfl~YI 50 (83)
T PF08640_consen 10 DLERKGLFTKEEIREIVKKRRDF-----EYKLQRRGKKKSDFLRYI 50 (83)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH-----HHHHHcCCCCHHHHHHHH
Confidence 35678999999999998887766 667777777788877765
No 258
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=41.03 E-value=55 Score=37.26 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=60.0
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 296 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~ 296 (427)
+++.||+.|+... +..+-.+-.+|..++.|...|...+.-....+......-.....+|+.+|....++.|.|+..
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~--- 324 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK--- 324 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH---
Confidence 6778888877654 345688899999999995555333321222221222222345678999999999999987433
Q ss_pred HHHHHHHHHHccCCCEEEEEEEec
Q 014288 297 VAKEAIERARRGEGPTLVECETYR 320 (427)
Q Consensus 297 a~~~A~~~ar~~~gP~lIe~~t~R 320 (427)
.-+++|+..+---+|--+..|
T Consensus 325 ---~i~~ya~~~~~TkiViG~~~~ 345 (890)
T COG2205 325 ---AIARYAREHNATKIVIGRSRR 345 (890)
T ss_pred ---HHHHHHHHcCCeeEEeCCCcc
Confidence 244566666544454444433
No 259
>PRK13683 hypothetical protein; Provisional
Probab=39.42 E-value=49 Score=26.98 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 014288 279 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 323 (427)
Q Consensus 279 ~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 323 (427)
+-+.+-+=+-.|..++|..+..|+ +.+.|.++|+.|.+..+
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am----~sg~P~llELtCek~~~ 53 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAM----RSGNPRLLELTCEKVED 53 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHH----hcCCCcEEEEEecCcCC
Confidence 334444555667888888777776 45789999999988655
No 260
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=39.17 E-value=91 Score=31.02 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=40.5
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCc--ccCccHHHHHHHHH---------HcCCCeEEEEEc
Q 014288 186 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT--CNNGQFFECLNMAA---------LWKLPIVFVVEN 254 (427)
Q Consensus 186 ~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa--~~~G~~~EaLn~A~---------~~~LPvi~VV~N 254 (427)
.+..||.+++.++|.++........ ..+-.+|||.--|+ +++|. ..-|.||. ..+||.|.|..|
T Consensus 130 df~FmgGSmGsVvGeki~ra~E~A~----e~k~P~v~f~aSGGARMQEg~-lSLMQMaktsaAl~~l~ea~lpyIsVLt~ 204 (294)
T COG0777 130 DFAFMGGSMGSVVGEKITRAIERAI----EDKLPLVLFSASGGARMQEGI-LSLMQMAKTSAALKRLSEAGLPYISVLTD 204 (294)
T ss_pred eccccccchhHHHHHHHHHHHHHHH----HhCCCEEEEecCcchhHhHHH-HHHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 3456677778888888775443321 12445677776666 56663 44444443 568999988876
Q ss_pred C
Q 014288 255 N 255 (427)
Q Consensus 255 N 255 (427)
=
T Consensus 205 P 205 (294)
T COG0777 205 P 205 (294)
T ss_pred C
Confidence 4
No 261
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.76 E-value=48 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014288 346 PITALKKYLIESSLASEAELKAIEKKI 372 (427)
Q Consensus 346 Pi~~~~~~L~~~g~~t~ee~~~i~~e~ 372 (427)
++..++. |.+.|++|++|..+.++++
T Consensus 4 ~L~~L~~-l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKE-LYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHH-HHHcCCCCHHHHHHHHHHH
Confidence 4555554 5688999999998887765
No 262
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=38.75 E-value=2.1e+02 Score=31.61 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=57.9
Q ss_pred CcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCcc---------HHHHHHHHH---HcCCCeEEEEEcCCcc
Q 014288 191 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---------FFECLNMAA---LWKLPIVFVVENNLWA 258 (427)
Q Consensus 191 G~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~---------~~EaLn~A~---~~~LPvi~VV~NN~y~ 258 (427)
|.+.|++-|...|.+....... .....+|+++-||-.+.+. ..+++..|. ..++++++|-.-+.
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~~--~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~-- 548 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVRR--KGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR-- 548 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC--
Confidence 4556777777777554321110 1235788889999877542 134444443 45566555422111
Q ss_pred ccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHH
Q 014288 259 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEA 301 (427)
Q Consensus 259 is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A 301 (427)
......++|+..|..++.+..-+...+.++++.+
T Consensus 549 ---------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ---------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ---------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123567888999999999888877776655443
No 263
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=38.41 E-value=3.1e+02 Score=26.10 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=42.8
Q ss_pred CCceEEEEeCCCcccCc-cHH-HHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhccccc--CCCcE-EEEeCCC
Q 014288 216 CDHVTLAFFGDGTCNNG-QFF-ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPA--FGMPG-FHVDGMD 290 (427)
Q Consensus 216 ~~~~vv~~~GDGa~~~G-~~~-EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a--~G~~~-~~Vdg~D 290 (427)
..+.||-+.|||--|.| .-. .+-..+...++ +. |+..|........ .++....+. .|.|+ +.+-..+
T Consensus 115 ~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi-----tI-NgL~I~~~~~~~~--~~L~~yy~~~VIgGpgAFV~~a~~ 186 (205)
T PF06707_consen 115 CWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI-----TI-NGLAILDDDPFGG--ADLDAYYRRCVIGGPGAFVETARG 186 (205)
T ss_pred CceEEEEECCCCCCCCCCCccHHHHHHHHHCCe-----EE-eeeEecCCCCCcc--ccHHHHHhhhcccCCCceEEEcCC
Confidence 46899999999999998 333 33333344443 11 4444543322111 133333332 35555 4445566
Q ss_pred HHHHHHHHHHHH
Q 014288 291 VLKVREVAKEAI 302 (427)
Q Consensus 291 ~~av~~a~~~A~ 302 (427)
..+..+++++.+
T Consensus 187 ~~df~~AirrKL 198 (205)
T PF06707_consen 187 FEDFAEAIRRKL 198 (205)
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 264
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=35.13 E-value=3.5e+02 Score=31.67 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCCCc--eEEEEeCCCcc-cCccHHHHHHHH-HHcCC--CeEEEEEcCCcccccccccc
Q 014288 193 GIPVATGAAFTSKYRREVLKEADCDH--VTLAFFGDGTC-NNGQFFECLNMA-ALWKL--PIVFVVENNLWAIGMSHLRA 266 (427)
Q Consensus 193 ~lp~AvGaA~A~k~~~~~~~~~~~~~--~vv~~~GDGa~-~~G~~~EaLn~A-~~~~L--Pvi~VV~NN~y~is~~~~~~ 266 (427)
-++.++|+|++ ++.. ++=.-+||=+. .|-.+-+-++.+ ..|+. ++|+. .-.+|....+.+.+
T Consensus 657 ~~G~~~G~a~~-----------g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~-~p~G~~g~g~~hsS 724 (924)
T PRK09404 657 VLGFEYGYSTA-----------EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVML-LPHGYEGQGPEHSS 724 (924)
T ss_pred HHHHHHHHHhc-----------CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEE-ecCcCCCCChhhhc
Confidence 46778888887 6665 55567777543 123356667775 67765 34433 34445554444333
Q ss_pred ccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 014288 267 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 316 (427)
Q Consensus 267 ~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~ 316 (427)
.+...+...+.--|+.++.. ..|.+.+..++.++. |..++|+++--
T Consensus 725 ~~~E~~l~~~~~~gl~Vv~p--stpad~~~lLr~q~~--r~~r~Pvv~~~ 770 (924)
T PRK09404 725 ARLERFLQLCAEDNMQVCNP--TTPAQYFHLLRRQAL--RPFRKPLVVMT 770 (924)
T ss_pred cCHHHHHHhCCCCCCEEEec--CCHHHHHHHHHHHHh--hCCCCCEEEec
Confidence 22233333322236665554 356666666655431 45568988755
No 265
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=35.09 E-value=2.3e+02 Score=30.30 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=69.4
Q ss_pred HhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeC
Q 014288 146 LSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFG 225 (427)
Q Consensus 146 La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~G 225 (427)
+..|++++.+..-+-.-.+ ..||.-..+...+ .+.--+++ .|.++=.++..-.. ..+..++|++|
T Consensus 302 ~~lG~~~e~i~~~l~~~~~--v~GRmE~v~~~~~--~v~VDyAH----nPd~le~~L~~~~~-------~~~g~li~VfG 366 (475)
T COG0769 302 LALGVDLEDILAGLETLKP--VPGRMELVNIGGK--LVIVDYAH----NPDGLEKALRAVRL-------HAAGRLIVVFG 366 (475)
T ss_pred HHcCCCHHHHHHHHHhcCC--CCCcceEecCCCC--eEEEEecc----ChHHHHHHHHHHHh-------hcCCcEEEEEC
Confidence 3489999999887654332 2344333333311 11111222 34444333332110 12334666665
Q ss_pred CCcc-cCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcE-EEEeCCCHHHHHHHHHHHHH
Q 014288 226 DGTC-NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIE 303 (427)
Q Consensus 226 DGa~-~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~-~~Vdg~D~~av~~a~~~A~~ 303 (427)
=|+= ..+ ...-|...+....++++|..+|--.- .+..-+.++..++.-+. +.+ ..+-.++++.|++
T Consensus 367 ~gGDrD~~-kr~~mg~ia~~~ad~vivt~dnpR~e-------dp~~i~~~i~~g~~~~~~~~~----~~dr~~AI~~ai~ 434 (475)
T COG0769 367 CGGDRDKS-KRPDMGAIAEQLADIVIVTSDNPRSE-------DPAVILADILAGIEAPEKYEI----IEDREEAIRKALD 434 (475)
T ss_pred ccCCCCcc-cccchHHHHHhcCCcEEEcCCCCCCc-------CHHHHHHHHHhccCCccceec----chhHHHHHHHHHH
Confidence 4442 222 12234445555556888888775111 01111233333322221 111 1244578888888
Q ss_pred HHHccCCCEEEEEEEecCCCCC
Q 014288 304 RARRGEGPTLVECETYRFRGHS 325 (427)
Q Consensus 304 ~ar~~~gP~lIe~~t~R~~gHs 325 (427)
.+. .+++++.. +.||.
T Consensus 435 ~a~--~~D~vlia----gkGhe 450 (475)
T COG0769 435 LAK--EGDVVLIA----GKGHE 450 (475)
T ss_pred hhc--cCCEEEEe----eccch
Confidence 775 56776665 66775
No 266
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=33.42 E-value=55 Score=35.85 Aligned_cols=52 Identities=25% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHHHHHc--CCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHH
Q 014288 234 FFECLNMAALW--KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 294 (427)
Q Consensus 234 ~~EaLn~A~~~--~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av 294 (427)
...+|.-+.++ ++|++++|.|.. | .. ...-.+.+++||++.+.||.+.|.+.
T Consensus 404 l~~aLED~~RhGqKlPL~VlvDnGs----T--eE---DipA~~~~k~Ygi~ivVVDHH~Pde~ 457 (715)
T COG1107 404 LNFALEDAHRHGQKLPLLVLVDNGS----T--EE---DIPAIKQLKAYGIDIVVVDHHYPDEA 457 (715)
T ss_pred HHHHHHHHHhcCCccceEEEEcCCC----c--cc---ccHHHHHHHhcCCCEEEEcCCCCcch
Confidence 34566666665 588887776654 1 11 12234668899999999999877654
No 267
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=33.42 E-value=53 Score=35.11 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=26.0
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEE
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE 253 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~ 253 (427)
.+-..+|-|++|+ ..+..+|...+|||+++=-
T Consensus 86 A~tsSiGPGA~Nm---vTaAalA~~NrlPvLllPg 117 (617)
T COG3962 86 AVTSSIGPGAANM---VTAAALAHVNRLPVLLLPG 117 (617)
T ss_pred EEecccCCcHHHH---HHHHHHHHhhcCceEeecc
Confidence 3556789999988 6678889999999999853
No 268
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=32.34 E-value=1.9e+02 Score=29.23 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred CCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 280 GMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 280 G~~~~~Vd-g~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
.+|+.+|= -.|+.+....++.|+ +.++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~----~~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAI----RSNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 55666443 347777777666554 457899884
No 269
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.33 E-value=86 Score=28.67 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=35.0
Q ss_pred CchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 269 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 269 ~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
+...+--|+|||..++.+++.+-+.+.+.++..++ +-.||..|+..+
T Consensus 20 TTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 20 TTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 45566678999999999999865667676665554 467898887743
No 270
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=32.16 E-value=1.8e+02 Score=27.40 Aligned_cols=62 Identities=23% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 014288 238 LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 315 (427)
Q Consensus 238 Ln~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe 315 (427)
...|...++|+++++-++. ++.-....+.+|..++.+++. .. ++.+.+.+.+.+..+..++.
T Consensus 66 A~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~-~~---~~~~~a~~~~~~~~~~~~~~ 127 (244)
T cd00640 66 AAAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD-FD---DAIALAKELAEEDPGAYYVN 127 (244)
T ss_pred HHHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC-HH---HHHHHHHHHHHhCCCCEecC
Confidence 3345578999888877654 112334566789999999876 22 22333434444434555443
No 271
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=31.62 E-value=56 Score=24.55 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCChhhhhhc
Q 014288 367 AIEKKIDEVVEDAVEFADESAPPPRSQLLEN 397 (427)
Q Consensus 367 ~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~ 397 (427)
..++-|++..++|.+.|.++..|+|.++..+
T Consensus 4 efDeyW~~Ra~eA~~~a~~aY~pdP~~Vt~~ 34 (56)
T PF04431_consen 4 EFDEYWQKRAEEARKAALAAYVPDPENVTNE 34 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4566777888889999999999999877553
No 272
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.50 E-value=1.9e+02 Score=23.95 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcC
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 255 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN 255 (427)
+++..+|++.-.|...+ ..+.+..|...+.|+|.|..|.
T Consensus 52 ~~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp STTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESST
T ss_pred cccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCCC
Confidence 46677888887887654 4889999999999997777553
No 273
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=31.25 E-value=2.6e+02 Score=30.94 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=52.0
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEEeC-CCHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKV 294 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg-~D~~av 294 (427)
-++||++.. .|.|=.+-+-+-=.+..+|||+|+|+-.+. +-..+++.. ..|++-+ --+|.+.+=. .|..++
T Consensus 382 ~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G--~fDls~l---~~iPnmvi~aP~de~el 454 (627)
T COG1154 382 MKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG--LFDLSFL---RCIPNMVIMAPRDEEEL 454 (627)
T ss_pred CCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc--HHHHHHH---hcCCCcEEecCCCHHHH
Confidence 456666652 344433455556667899999999996652 222222211 2233222 2467666543 466666
Q ss_pred HHHHHHHHHHHHccC-CCEEEEEEEecCCC
Q 014288 295 REVAKEAIERARRGE-GPTLVECETYRFRG 323 (427)
Q Consensus 295 ~~a~~~A~~~ar~~~-gP~lIe~~t~R~~g 323 (427)
...+..| ...+ +|+.|-. .|+.|
T Consensus 455 ~~ml~ta----~~~~~gP~AiRy--Prg~~ 478 (627)
T COG1154 455 RQMLYTA----LAQDDGPVAIRY--PRGNG 478 (627)
T ss_pred HHHHHHH----HhcCCCCeEEEe--cCCCC
Confidence 6655544 4444 8998754 45543
No 274
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=30.72 E-value=1.1e+02 Score=33.08 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEc-CCcccccc--ccccccCchh---hcccccCCCcEEEEeCCCH
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN-NLWAIGMS--HLRATSDPQI---YKKGPAFGMPGFHVDGMDV 291 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~N-N~y~is~~--~~~~~~~~d~---~~~a~a~G~~~~~Vdg~D~ 291 (427)
.-.|..+|=|+++- .-.+.-|=..++|||+||-- |--..++. .+....+.|| .++++..-+...-++ |.
T Consensus 68 ~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~~ 142 (561)
T KOG1184|consen 68 GACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--DI 142 (561)
T ss_pred eEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--CH
Confidence 34677778888642 22344455789999999841 11011111 1122233343 334444334444443 44
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEE
Q 014288 292 LKVREVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 292 ~av~~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
++..+.+.+|++.+....+|+-|.+-+
T Consensus 143 e~A~~~ID~aI~~~~~~~rPVYi~iP~ 169 (561)
T KOG1184|consen 143 EDAPEQIDKAIRTALKESKPVYIGVPA 169 (561)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeec
Confidence 455566677777777888999999965
No 275
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=30.68 E-value=2.4e+02 Score=26.34 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=34.5
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHH-HcCCC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCC
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAA-LWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 289 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~-~~~LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 289 (427)
+++|.+.|+|+..+ ++--+. ..+++ |++||.|+. . ....++|+..|+|++.++-.
T Consensus 3 ki~vl~sg~gs~~~-----~ll~~~~~~~~~~~I~~vvs~~~-~-----------~~~~~~a~~~gIp~~~~~~~ 60 (200)
T PRK05647 3 RIVVLASGNGSNLQ-----AIIDACAAGQLPAEIVAVISDRP-D-----------AYGLERAEAAGIPTFVLDHK 60 (200)
T ss_pred eEEEEEcCCChhHH-----HHHHHHHcCCCCcEEEEEEecCc-c-----------chHHHHHHHcCCCEEEECcc
Confidence 47899999998744 333332 23344 666666764 1 12356778889999987643
No 276
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=29.86 E-value=4e+02 Score=24.26 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=42.8
Q ss_pred CceEEEEeCCCccc-CccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHH
Q 014288 217 DHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 295 (427)
Q Consensus 217 ~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~ 295 (427)
.+.++++++||... .+...+....+...++.|.+|-..+. ..-+.++|++-|..++.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 34577788888754 33345666777777877655533211 1236678888899888874 445655
Q ss_pred HHHH
Q 014288 296 EVAK 299 (427)
Q Consensus 296 ~a~~ 299 (427)
+.+.
T Consensus 173 ~~~~ 176 (183)
T cd01453 173 ELLL 176 (183)
T ss_pred HHHH
Confidence 5443
No 277
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=29.28 E-value=2.1e+02 Score=31.74 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCc-----cHHHHHHHHHH---cCCCeEEEEEcCCccccccc
Q 014288 192 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG-----QFFECLNMAAL---WKLPIVFVVENNLWAIGMSH 263 (427)
Q Consensus 192 ~~lp~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G-----~~~EaLn~A~~---~~LPvi~VV~NN~y~is~~~ 263 (427)
.+.|++-|...|.++...........+.+|+++.||-.+.+ .+.+++..|.. .++++++|-..+.
T Consensus 539 G~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------- 611 (633)
T TIGR02442 539 GRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------- 611 (633)
T ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC-------
Confidence 34455555555554432111111235678999999987653 12344444443 4555544422121
Q ss_pred cccccCchhhcccccCCCcEEEE
Q 014288 264 LRATSDPQIYKKGPAFGMPGFHV 286 (427)
Q Consensus 264 ~~~~~~~d~~~~a~a~G~~~~~V 286 (427)
........++|+..|..++.+
T Consensus 612 --~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 612 --FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred --CcchhHHHHHHHhhCCeEEec
Confidence 011123455677777777654
No 278
>PLN02828 formyltetrahydrofolate deformylase
Probab=28.06 E-value=3.1e+02 Score=27.11 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCceEEEEeCCCcccCccHHHHHHHHHHcC-CC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeC
Q 014288 216 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 288 (427)
Q Consensus 216 ~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg 288 (427)
+.+++|.+.|-|+. .++|-.+...+ || |+.|+.|+.-. +..+..++|+.+|+|.+.+.-
T Consensus 70 ~~riavlvSg~g~n-----l~~ll~~~~~g~l~~eI~~ViSn~~~~---------~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 70 KYKIAVLASKQDHC-----LIDLLHRWQDGRLPVDITCVISNHERG---------PNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CcEEEEEEcCCChh-----HHHHHHhhhcCCCCceEEEEEeCCCCC---------CCchHHHHHHHcCCCEEEeCC
Confidence 45788888888876 45666655433 44 88888887411 123567789999999987653
No 279
>PF10667 DUF2486: Protein of unknown function (DUF2486); InterPro: IPR018924 This family is made up of members from various Burkholderia spp. The function is unknown.
Probab=27.78 E-value=74 Score=30.82 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHH
Q 014288 289 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAI 368 (427)
Q Consensus 289 ~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPi~~~~~~L~~~g~~t~ee~~~i 368 (427)
.|...+.+-++.=+.+-..++|+.+||.+| ||-+..=..||+.+ +|.|-...+
T Consensus 172 ~dA~~iAeRl~~r~~~~l~gegr~~IEarC-------------------------R~al~~h~~~Lv~q--itreva~aL 224 (246)
T PF10667_consen 172 EDAQHIAERLRGRVANYLTGEGRGLIEARC-------------------------RDALQEHTAWLVGQ--ITREVALAL 224 (246)
T ss_pred ccHHHHHHHHHHHHHHHHccccHHHHHHHH-------------------------HHHHHHHHHHHHHH--HHHHHHHHH
Confidence 355566666666666677888888888754 45566666777765 677888899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 014288 369 EKKIDEVVEDAVEFADE 385 (427)
Q Consensus 369 ~~e~~~~v~~a~~~A~~ 385 (427)
+.++...|.++++.+..
T Consensus 225 e~e~~~WvreAv~eela 241 (246)
T PF10667_consen 225 ETEMMDWVREAVDEELA 241 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 280
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=27.08 E-value=4.9e+02 Score=28.97 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=85.3
Q ss_pred CCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhcccCCCccCCCCCCccccccCcccCCccCCCcch
Q 014288 115 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 194 (427)
Q Consensus 115 ~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g~~~~~~~~el~g~~~g~~~G~ggs~H~~~~~~~~~~~~g~lG~~l 194 (427)
..|+||+.-+ +|..+=-+++.||+ -|..+++..+.....-. ++-+.-|+ .| =-..+
T Consensus 16 llGneAi~r~---Ale~gV~~~aGYpG--------tPstei~e~la~~~~~l----~~vy~e~s--~N-------EkvA~ 71 (640)
T COG4231 16 LLGNEAIARG---ALEAGVGVAAGYPG--------TPSTELIETLAKAKKIL----GDVYFEWS--LN-------EKVAL 71 (640)
T ss_pred hccHHHHHHH---HHhcCceEEeccCC--------CCcHHHHHHHHHhhhhc----CcEEEEec--cc-------HHHHH
Confidence 4899998654 34445557778885 45566666554432211 01011111 01 01134
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCceEEEEeCCCcccCccHHHHHHHHHHcCCC--eEEEEEcCCccccccccccccCchh
Q 014288 195 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQI 272 (427)
Q Consensus 195 p~AvGaA~A~k~~~~~~~~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vi~VV~NN~y~is~~~~~~~~~~d~ 272 (427)
-.|.|++++ +...++.+= ....+...-.|..+..-+.. +|+|+-++- +...++..|. +..+
T Consensus 72 e~a~GA~~~-------------G~ral~~mK--hVGlNvAsDpl~s~ay~Gv~GGlviv~aDDp-g~~SSqneqd-sr~y 134 (640)
T COG4231 72 ETAAGASYA-------------GVRALVTMK--HVGLNVASDPLMSLAYAGVTGGLVIVVADDP-GMHSSQNEQD-SRAY 134 (640)
T ss_pred HHHHHhhhc-------------CceeeEEec--ccccccchhhhhhhhhcCccccEEEEEccCC-CcccccchhH-hHHH
Confidence 556676665 222222221 11111112233333333443 666666664 3433333332 1122
Q ss_pred hcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 014288 273 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 327 (427)
Q Consensus 273 ~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 327 (427)
++...+|++ |-.|+.++++.++.|++..+..+-|+++-+.|. -.|+..
T Consensus 135 ---~~~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~ttr--~~h~~~ 182 (640)
T COG4231 135 ---GKFALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTTR--VSHSRG 182 (640)
T ss_pred ---HHhcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEee--eeccce
Confidence 223345554 455899999999999999999999999987663 445443
No 281
>PRK06381 threonine synthase; Validated
Probab=26.02 E-value=3.7e+02 Score=26.65 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCC
Q 014288 239 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 289 (427)
Q Consensus 239 n~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~ 289 (427)
..|...++|+++|+-.+. ...-.+..++||..++.+++.
T Consensus 80 ~~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 80 YFARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC
Confidence 345679999888876542 112334677899999999874
No 282
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.93 E-value=1.1e+02 Score=32.20 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcC
Q 014288 91 LGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVST 138 (427)
Q Consensus 91 ~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~ 138 (427)
..+.||+.+.++... + . -+..+.|..|+..++..+++++|.|+..
T Consensus 62 tv~~lE~~la~leg~-~-~-av~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 62 TLAAFEQKLAELEGG-V-G-AVATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHHhCC-C-c-EEEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 367899988886533 2 1 2345899999999998889999988764
No 283
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=25.68 E-value=1.3e+02 Score=28.14 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHhhh
Q 014288 347 ITALKKYLIESSLASEAELKAIEKKIDEVV-----EDAVEFADE 385 (427)
Q Consensus 347 i~~~~~~L~~~g~~t~ee~~~i~~e~~~~v-----~~a~~~A~~ 385 (427)
...++..|+++|+++.++++++.+.++..+ .+-+++||.
T Consensus 9 ~~al~~ll~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~ 52 (188)
T PF02979_consen 9 VRALESLLIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWT 52 (188)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhC
Confidence 456889999999999999998887777662 233555555
No 284
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.75 E-value=2.8e+02 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=25.0
Q ss_pred EEEeCCCc--ccCccHHHHHHHHHHc---CCCeEEEEEcC
Q 014288 221 LAFFGDGT--CNNGQFFECLNMAALW---KLPIVFVVENN 255 (427)
Q Consensus 221 v~~~GDGa--~~~G~~~EaLn~A~~~---~LPvi~VV~NN 255 (427)
|.|--||+ ...|.+.-++.+|..+ +..++|+|.+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45666777 4578888888888755 45688888764
No 285
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=23.80 E-value=1.6e+02 Score=28.84 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=37.9
Q ss_pred HHcCCCeEEEEEcCC---------ccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 014288 242 ALWKLPIVFVVENNL---------WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 312 (427)
Q Consensus 242 ~~~~LPvi~VV~NN~---------y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~gP~ 312 (427)
.+.+-|+|+.+.|+= .+++..+-......+..++++-.+.=.+.+-..+. +-.++++.|.+.+.+.+.|+
T Consensus 4 ir~~~PLVh~ITN~Vt~n~~AN~~LA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~-~~~~~m~~A~~~A~~~~~Pv 82 (246)
T PF02110_consen 4 IREKRPLVHCITNYVTANDVANALLAIGASPIMAEAPEEVEEFASIADALVINIGTLTD-ERIEAMKKAAKAANELGIPV 82 (246)
T ss_dssp HHHH--EEEEE--TTTHHHHHHHHHHCTSEEEE--STTTHHHHHHCTSEEEEESTTSSH-HHHHHHHHHHHHHHHTT--E
T ss_pred hHhcCCeEEEccccchhhhHHHHHHHcCCCccccCCHHHHHHHHHHcCEEEEECCCCCH-hHHHHHHHHHHHHHHcCCCE
Confidence 345679999999874 23333332222333444444433333333334444 33477888999999999999
Q ss_pred EEEEE
Q 014288 313 LVECE 317 (427)
Q Consensus 313 lIe~~ 317 (427)
+++-+
T Consensus 83 VLDPV 87 (246)
T PF02110_consen 83 VLDPV 87 (246)
T ss_dssp EEE-T
T ss_pred EEeCc
Confidence 99864
No 286
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=23.41 E-value=1.3e+02 Score=30.80 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccc----cccCchhhcccccCCCcEEEEeCCCH
Q 014288 216 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR----ATSDPQIYKKGPAFGMPGFHVDGMDV 291 (427)
Q Consensus 216 ~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~----~~~~~d~~~~a~a~G~~~~~Vdg~D~ 291 (427)
.+++-+|+---|-...- ....|-.|..-.+|++.|- .+ .|..+ .....|+..+++..---.++| ..|
T Consensus 66 ~gnigvcigtsgpagtd-mitglysa~adsipilcit--gq----aprarl~kedfqavdi~~ia~pv~kwavtv--~ep 136 (592)
T COG3960 66 AGNIGVCIGTSGPAGTD-MITGLYSASADSIPILCIT--GQ----APRARLHKEDFQAVDIEAIAKPVSKWAVTV--REP 136 (592)
T ss_pred CCceEEEecCCCCCccc-hhhhhhhcccccccEEEec--CC----CchhhhchhhhhhhhHHHhhhhhhhhhhhh--cch
Confidence 45555555433333221 2455666667777766553 11 11111 112345666655432222333 466
Q ss_pred HHHHHHHHHHHHHHHcc-CCCEEEEEEE
Q 014288 292 LKVREVAKEAIERARRG-EGPTLVECET 318 (427)
Q Consensus 292 ~av~~a~~~A~~~ar~~-~gP~lIe~~t 318 (427)
..|-.+++.|+...|.+ .||+||++..
T Consensus 137 alvp~v~qkafhlmrs~rpgpvlidlp~ 164 (592)
T COG3960 137 ALVPRVLQQAFHLMRSGRPGPVLIDLPF 164 (592)
T ss_pred hhhHHHHHHHHHHHhcCCCCCeEEeccc
Confidence 77888899999998886 6899998843
No 287
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=23.10 E-value=38 Score=35.46 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=32.6
Q ss_pred CCHHHHHHHHhcccCCCc--cCCCCC-----Cccccc---cCc--ccCCccCCCcchHHHHHHHH
Q 014288 150 VPARAVMSELFGKATGCC--RGQGGS-----MHMFSK---EHN--LLGGFAFIGEGIPVATGAAF 202 (427)
Q Consensus 150 ~~~~~~~~el~g~~~g~~--~G~ggs-----~H~~~~---~~~--~~~~~g~lG~~lp~AvGaA~ 202 (427)
+.+..++.++....++.. ..++|. .+++.. ... ...+.|.||+++|.|+|+++
T Consensus 367 i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 367 LSELSLARALSQLLPEGAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred ccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 566777777777665543 223332 222211 122 24567999999999999986
No 288
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.58 E-value=2.4e+02 Score=26.19 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=32.1
Q ss_pred ceEEEEeCCCcccCccHHHHHHHHHHcCCC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe
Q 014288 218 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 287 (427)
Q Consensus 218 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd 287 (427)
+++|.+.|.|+..+. -++.....+++ |..||-|+. . -...++|+.+|++.+.++
T Consensus 2 riail~sg~gs~~~~----ll~~~~~~~l~~~I~~vi~~~~-~-----------~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 2 RIVVLISGNGSNLQA----IIDACKEGKIPASVVLVISNKP-D-----------AYGLERAAQAGIPTFVLS 57 (190)
T ss_pred eEEEEEcCCChhHHH----HHHHHHcCCCCceEEEEEECCc-c-----------chHHHHHHHcCCCEEEEC
Confidence 467888888886442 23333334554 555666653 0 122466778899988765
No 289
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.52 E-value=3e+02 Score=27.97 Aligned_cols=108 Identities=24% Similarity=0.240 Sum_probs=63.8
Q ss_pred EEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeC-CCHHHHHHHH
Q 014288 220 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKVREVA 298 (427)
Q Consensus 220 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg-~D~~av~~a~ 298 (427)
+++.+ |+.+.+...+....|++.++..|++++|-- . . .. .+.+ .-+.+-+|....-+|. .|+. +....
T Consensus 66 TlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~-~---y~--~ngn-~Ll~~l~G~~~~~~~~~~d~~-~~~~~ 134 (323)
T COG2515 66 TLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A-N---YL--LNGN-LLLSKLMGAEVRAVDAGTDIG-INASA 134 (323)
T ss_pred EEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c-c---cc--cccc-hhhhhhcCceEEEecCCCChh-hchhh
Confidence 44444 567777788888999999999999998754 1 0 00 1111 1233446888887774 4542 23333
Q ss_pred HHHHHHHH-ccCCCEEEEEEEecCCC-CCCCCCCCCCCHHHHHHHhc
Q 014288 299 KEAIERAR-RGEGPTLVECETYRFRG-HSLADPDELRDPAEKARYAA 343 (427)
Q Consensus 299 ~~A~~~ar-~~~gP~lIe~~t~R~~g-Hs~~D~~~yR~~~e~~~~~~ 343 (427)
+...+.++ ++++|.+|-. .| |+.....-.+...|+..|.+
T Consensus 135 ~~~~e~~~~~g~kpyvIp~-----GG~~~~g~lGyv~~a~Ei~~Q~~ 176 (323)
T COG2515 135 EELAEEVRKQGGKPYVIPE-----GGSSPLGALGYVRLALEIAEQAE 176 (323)
T ss_pred HHHHHHHHhcCCCCcEecc-----CCcCccccccHHHHHHHHHHHHh
Confidence 44444444 4778988754 33 33333332367777776654
No 290
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.44 E-value=3.8e+02 Score=26.65 Aligned_cols=52 Identities=23% Similarity=0.151 Sum_probs=34.1
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcC-CC--eEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 287 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd 287 (427)
.+++|...|- |...++|--+...+ ++ |+.|+.|+. +...+|+.+|+|.+.++
T Consensus 90 ~ri~vl~Sg~-----g~nl~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 90 PKVLIMVSKF-----DHCLNDLLYRWRIGELPMDIVGVVSNHP--------------DLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ceEEEEEcCC-----cccHHHHHHHHHcCCCCcEEEEEEECCc--------------cHHHHHHHhCCCEEEeC
Confidence 3556666663 33367777766544 44 777777764 34455888999999875
No 291
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=22.20 E-value=4.7e+02 Score=24.69 Aligned_cols=105 Identities=23% Similarity=0.269 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHH-cCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCC
Q 014288 232 GQFFECLNMAAL-WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEG 310 (427)
Q Consensus 232 G~~~EaLn~A~~-~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~~~A~~~ar~~~g 310 (427)
.+..|++-.+.. ...|+|.++.++. +.....+...|+.++-|++-|+.-+...+.-|+.+-.....
T Consensus 63 rd~~e~~~~~~~~~~~piv~lt~~s~-------------p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~~~ 129 (194)
T COG3707 63 RDIIEALLLASENVARPIVALTAYSD-------------PALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEERRA 129 (194)
T ss_pred ccHHHHHHHhhcCCCCCEEEEEccCC-------------hHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHHHH
Confidence 334556655554 4555776665443 45667788889999999999999988888776654332210
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCHHHHH----HHhcCChHHHHHHHHHHcCCCCHHH-HHHHHHHH
Q 014288 311 PTLVECETYRFRGHSLADPDELRDPAEKA----RYAARDPITALKKYLIESSLASEAE-LKAIEKKI 372 (427)
Q Consensus 311 P~lIe~~t~R~~gHs~~D~~~yR~~~e~~----~~~~~DPi~~~~~~L~~~g~~t~ee-~~~i~~e~ 372 (427)
. ..|.+ ....+.-|.+.+..|+.+..++++| .+.+++.+
T Consensus 130 ---------------------L--~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 130 ---------------------L--RRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred ---------------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 11222 2345677889999999887788766 34444443
No 292
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=22.19 E-value=2.2e+02 Score=32.09 Aligned_cols=74 Identities=26% Similarity=0.261 Sum_probs=42.5
Q ss_pred eEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHHHHH
Q 014288 219 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 298 (427)
Q Consensus 219 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~~a~ 298 (427)
+.++=--||-... ..|++.++..|++||||=- +++. |..+++|- ...++|.+++
T Consensus 160 VpvVPGTpgPitt--~~EA~eF~k~yG~PvI~KA-----AyGG------------------GGRGmRvV-r~~e~vee~f 213 (1176)
T KOG0369|consen 160 VPVVPGTPGPITT--VEEALEFVKEYGLPVIIKA-----AYGG------------------GGRGMRVV-RSGEDVEEAF 213 (1176)
T ss_pred CCccCCCCCCccc--HHHHHHHHHhcCCcEEEee-----cccC------------------CCcceEEe-echhhHHHHH
Confidence 3344444555544 5999999999999988753 1111 23333321 1233566666
Q ss_pred HHHHHHHHc--cCCCEEEEEEE
Q 014288 299 KEAIERARR--GEGPTLVECET 318 (427)
Q Consensus 299 ~~A~~~ar~--~~gP~lIe~~t 318 (427)
++|...|++ ++|..|||=..
T Consensus 214 ~Ra~SEA~aaFGnG~~FvEkF~ 235 (1176)
T KOG0369|consen 214 QRAYSEALAAFGNGTLFVEKFL 235 (1176)
T ss_pred HHHHHHHHHhcCCceeeHHhhh
Confidence 666666654 56666665433
No 293
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=21.86 E-value=4.7e+02 Score=30.47 Aligned_cols=87 Identities=9% Similarity=-0.024 Sum_probs=56.4
Q ss_pred CcccCccHHHHHHHHHHcCCCeEEEEEcCCc-cccccccccccCchhhcccccCCCcEEEE-eCCCHHHHHHHHHHHHHH
Q 014288 227 GTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIER 304 (427)
Q Consensus 227 Ga~~~G~~~EaLn~A~~~~LPvi~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~D~~av~~a~~~A~~~ 304 (427)
+.|...-.++-+..++..++++++|...-+. .++. ......++.+++-.-.+|..+| +-.|..++..+++.++++
T Consensus 598 a~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~---eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~r 674 (889)
T TIGR03186 598 SMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGG---EGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMRE 674 (889)
T ss_pred HHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCC---CcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHH
Confidence 3344344578899999999999999887763 2322 1112234445555556776644 556888888888888886
Q ss_pred HHcc--CCCEEEEE
Q 014288 305 ARRG--EGPTLVEC 316 (427)
Q Consensus 305 ar~~--~gP~lIe~ 316 (427)
+... ++|+.|-+
T Consensus 675 m~~~~~~gp~YlRl 688 (889)
T TIGR03186 675 MLERQRDEFYYLTV 688 (889)
T ss_pred HHhcCCCceEEEEe
Confidence 6554 47777655
No 294
>PRK10490 sensor protein KdpD; Provisional
Probab=21.66 E-value=2.9e+02 Score=31.95 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=54.6
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEE-EEcCCccccccccccccCchhhcccccCCCcEEEEeCCCHHHHH
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV-VENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 295 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~V-V~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~D~~av~ 295 (427)
+++.||+.|. ..++-.+-.+..+|.+.+.|++.| |+...... ........-.+..++|+.+|..+..+.|.|+.+.
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~-~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~- 327 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHR-LPEKKRRAILSALRLAQELGAETATLSDPAEEKA- 327 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc-CCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH-
Confidence 4456666665 455555678889999999994333 33332111 1111111112333689999999999999886532
Q ss_pred HHHHHHHHHHHccCCCEEEEEEE
Q 014288 296 EVAKEAIERARRGEGPTLVECET 318 (427)
Q Consensus 296 ~a~~~A~~~ar~~~gP~lIe~~t 318 (427)
-+++|+..+-..+|--+.
T Consensus 328 -----i~~~A~~~~vt~IViG~s 345 (895)
T PRK10490 328 -----VLRYAREHNLGKIIIGRR 345 (895)
T ss_pred -----HHHHHHHhCCCEEEECCC
Confidence 345666655555554444
No 295
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=21.61 E-value=1.4e+02 Score=20.13 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 014288 345 DPITALKKYLIESSLASEAELKAIEKKIDEVVE 377 (427)
Q Consensus 345 DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~ 377 (427)
||+..|-+.+-...++|.+|...+-+.+++-.+
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~ 34 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDE 34 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHH
Confidence 688888888889999998777677666665543
No 296
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=21.57 E-value=2.1e+02 Score=22.91 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.4
Q ss_pred cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014288 343 ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVE 381 (427)
Q Consensus 343 ~~DPi~~~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a~~ 381 (427)
.++-+.-+-..|++.++++++|.+.+.++-....++|..
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~ 52 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARV 52 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHH
Confidence 445677788889999999999999998875444444444
No 297
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.29 E-value=1.7e+02 Score=24.54 Aligned_cols=40 Identities=8% Similarity=0.022 Sum_probs=30.5
Q ss_pred CCCceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCC
Q 014288 215 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 256 (427)
Q Consensus 215 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~ 256 (427)
.++..++++.--|...+ ..+++..|...+.|+|.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 35667888887777655 48899999999999888876543
No 298
>PLN03013 cysteine synthase
Probab=21.01 E-value=2.6e+02 Score=29.62 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=5.0
Q ss_pred HcCCCeEEEEE
Q 014288 243 LWKLPIVFVVE 253 (427)
Q Consensus 243 ~~~LPvi~VV~ 253 (427)
..++++++|+-
T Consensus 196 ~~G~~~~VvvP 206 (429)
T PLN03013 196 SRGYRLILTMP 206 (429)
T ss_pred HcCCCEEEEEC
Confidence 34455444443
No 299
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=20.95 E-value=1.2e+02 Score=31.50 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.8
Q ss_pred CceEEEEeCCCcccCccHHHHHHHHHHcCCCeEEE
Q 014288 217 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV 251 (427)
Q Consensus 217 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~V 251 (427)
.+.++|++||| +|+-+-|.+++.|+.=|
T Consensus 423 ~K~~yvvIgdG-------~eee~aAK~ln~PfwrI 450 (468)
T KOG3107|consen 423 RKVVYVVIGDG-------VEEEQAAKALNMPFWRI 450 (468)
T ss_pred CceEEEEecCc-------HHHHHHHHhhCCceEee
Confidence 36788999997 77778888888886544
No 300
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=20.94 E-value=1.4e+02 Score=31.12 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=37.0
Q ss_pred HHHHHH----HHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcCCcchHHHHhcC
Q 014288 92 GRSFED----MCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKG 149 (427)
Q Consensus 92 ~R~~e~----~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~yR~~~~~La~g 149 (427)
.+.||+ ++.+++.. + ...+.++.|.-|...++..+++++|.|+..--.|+..+..|
T Consensus 72 ~~~lE~~~~~~la~l~g~-~-~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g 131 (416)
T PRK13034 72 VDEVEALAIERAKQLFGC-D-YANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHG 131 (416)
T ss_pred HHHHHHHHHHHHHHHhCC-C-ceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecC
Confidence 455666 66665532 2 33344579999999888888999999988544554433333
No 301
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=20.76 E-value=3.8e+02 Score=27.24 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHh-cCCCCEEEcC
Q 014288 92 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKL-LKKEDSVVST 138 (427)
Q Consensus 92 ~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~-L~~~D~v~~~ 138 (427)
.+.||+.+.+++.... .+..+.|.+|+..++..+ ++++|.|+..
T Consensus 35 ~~~le~~la~~~g~~~---~v~~~sgt~al~lal~al~~~~Gd~Viv~ 79 (379)
T PRK11658 35 NQALEQAFCQLTGNQH---AIAVSSATAGMHITLMALGIGPGDEVITP 79 (379)
T ss_pred HHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHcCCCCCCEEEEC
Confidence 5789999888775432 233578999999888777 7899976653
No 302
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=20.63 E-value=1.4e+02 Score=31.18 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEcC
Q 014288 91 LGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVST 138 (427)
Q Consensus 91 ~~R~~e~~~~~~~~~gk~~G~~~~~~GqEa~~vg~~~~L~~~D~v~~~ 138 (427)
....||+|+..+ +|-. +.+..+.||-|+..++..+++++|.|+++
T Consensus 63 T~~vlE~RiAaL--EGG~-aa~a~aSG~AA~~~ai~~la~aGD~iVss 107 (426)
T COG2873 63 TTDVLEERIAAL--EGGV-AALAVASGQAAITYAILNLAGAGDNIVSS 107 (426)
T ss_pred hHHHHHHHHHHh--hcch-hhhhhccchHHHHHHHHHhccCCCeeEee
Confidence 356789888774 4444 45667899999999999999999988875
No 303
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=20.54 E-value=3.8e+02 Score=20.18 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 014288 350 LKKYLIESSLASEAELKAIEKKIDEVVEDA 379 (427)
Q Consensus 350 ~~~~L~~~g~~t~ee~~~i~~e~~~~v~~a 379 (427)
+-...++.|.+|.|+-+.|.+.+++..+..
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334456789999999999998888776543
No 304
>PRK06988 putative formyltransferase; Provisional
Probab=20.38 E-value=3e+02 Score=27.57 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=36.0
Q ss_pred EEEeCCCcccCccHHHHHHHHHHcCCCeEEEEEcCCccccccccccccCchhhcccccCCCcEEEEe
Q 014288 221 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 287 (427)
Q Consensus 221 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G~~~~~Vd 287 (427)
|+|+|.+.+. ..+|+.-...+..++.||.+..-.- . ......+.++|..+|++++..+
T Consensus 5 Ivf~Gs~~~a----~~~L~~L~~~~~~i~~Vvt~~d~~~----~-~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 5 AVVFAYHNVG----VRCLQVLLARGVDVALVVTHEDNPT----E-NIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEeCcHHH----HHHHHHHHhCCCCEEEEEcCCCCCc----c-CcCCCHHHHHHHHcCCcEEccc
Confidence 7888888864 3345444455777887776642010 0 1112357788899999998744
Done!