BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014291
         (427 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
           Northeast Structural Genomics Consortium Target Ht2b
          Length = 52

 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 273 QTCGVCSKLLSELCVVA-VLTCGHLYHADCLENITAEINKYDPACPVC 319
           Q C +C + +    VVA VL CGHL H  C E +  E  +    CP+C
Sbjct: 6   QNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR----CPLC 49


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 29.6 bits (65), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 275 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
           C +C  +L E   V  L C HL+H  C++       K    CP+C
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK----CPIC 57


>pdb|1W36|C Chain C, Recbcd:dna Complex
 pdb|1W36|F Chain F, Recbcd:dna Complex
 pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
 pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
          Length = 1122

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 16  SSTSADILHRNIRYSPTWSFRWDHRGRVAGEETAVAW 52
           SS +AD+  + + Y P W  +W+    V G   A AW
Sbjct: 128 SSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAW 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,748,999
Number of Sequences: 62578
Number of extensions: 360899
Number of successful extensions: 508
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 19
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)