BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014291
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 263 RVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
R++ D C +C ++ E +L CGH Y DCL+N++ ++ + CPVC
Sbjct: 4 RLTVPELQDQLQCPICLEVFKE---PLMLQCGHSYCKDCLDNLSQHLDS-ELCCPVC 56
>sp|P12868|PEP5_YEAST Vacuolar membrane protein PEP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEP5 PE=1 SV=2
Length = 1029
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCL--ENITAEINKYDPACPVCTLGEKKTHKLS 330
QTC +C L V CGH+YH CL E T E + CP C + + ++KL
Sbjct: 926 QTCFMCRLTLD--IPVVFFKCGHIYHQHCLNEEEDTLESERKLFKCPKCLVDLETSNKLF 983
Query: 331 E 331
E
Sbjct: 984 E 984
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 246 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 305
D + G E+I R + ++TC VC +E + L C H YH C++
Sbjct: 542 DDQPRGLTKEQIDNLAMRSFGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRW 600
Query: 306 TAEINKYDPACPVC 319
+E + CP+C
Sbjct: 601 LSE----NSTCPIC 610
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 246 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 305
D + G E+I +R + ++TC VC +E + L C H YH C++
Sbjct: 557 DDQPRGLTKEQIDNLSTRNFGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRW 615
Query: 306 TAEINKYDPACPVC 319
+E + CP+C
Sbjct: 616 LSE----NSTCPIC 625
>sp|Q9JIT1|RNF32_MOUSE RING finger protein 32 OS=Mus musculus GN=Rnf32 PE=2 SV=1
Length = 368
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 331
+Q C +C + EL +L+C H++H CL+ NK CP+C + +T + +
Sbjct: 126 IQPCPICKEEF-ELHPQVLLSCSHVFHRACLQAFEKFTNK--KTCPLCRKNQYQTRVIHD 182
Query: 332 RALKSEMESKARNNKRWKNRIV 353
A ++ R W+ IV
Sbjct: 183 GARLFRVKCATRIQAYWRGYIV 204
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 246 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 305
D + G E+I +R + ++TC VC +E + L C H YH C++
Sbjct: 540 DDQPRGLTKEQIDNLSTRNFGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRW 598
Query: 306 TAEINKYDPACPVC 319
+E + CP+C
Sbjct: 599 LSE----NSTCPIC 608
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 246 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 305
D + G E+I +R + ++TC VC +E + L C H YH C++
Sbjct: 675 DDQPRGLTKEQIDNLSTRNYGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRW 733
Query: 306 TAEINKYDPACPVC 319
+E + CP+C
Sbjct: 734 LSE----NSTCPIC 743
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
++TC VC +E + L C H YH C++ +E + CP+C
Sbjct: 543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE----NSTCPIC 586
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 267 SSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
+S ++ TC VC + + + V+A+L C H +HA CLE D CPVC
Sbjct: 252 TSLTELPTCAVCLERMDD-SVLAIL-CNHSFHARCLEQWA------DNTCPVC 296
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 275 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERAL 334
C +C LL A L CGH + CLE + + ACP C G + L + L
Sbjct: 21 CIICQGLLD---WPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKNTL 77
Query: 335 KSEMESKARNNKR 347
++ K R R
Sbjct: 78 LQDLADKYRRAAR 90
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 273 DGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE----HRTCPMC 317
>sp|Q91W86|VPS11_MOUSE Vacuolar protein sorting-associated protein 11 homolog OS=Mus
musculus GN=Vps11 PE=1 SV=3
Length = 941
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 256 KIARSCSRVSASSSVDMQT-CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDP 314
+I + + AS + +T C +C+ L EL V L CGH +H C E+ + D
Sbjct: 802 RIRQEIQELKASPKIFQKTKCSICNSAL-ELPSVHFL-CGHSFHQHCFESYSES----DA 855
Query: 315 ACPVCTLGEKKTHKLSERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRH-KGSWNE 373
CP C +K + RA E K + ++++++ SN DS SV+ D +G +N+
Sbjct: 856 DCPTCLPENRKVMDMI-RA----QEQKRDLHDQFQHQLKCSN-DSFSVIADYFGRGVFNK 909
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 273 DGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE----HRTCPMC 317
>sp|Q75DC2|ASR1_ASHGO Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=ASR1 PE=3 SV=1
Length = 328
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 28/161 (17%)
Query: 201 REERPVIPSWSNESTVGSGVGSS-DGWSM--NAFSELMATSHKERWSFDSESLGFNHEKI 257
R E V+ +E + VG D + + S+L+A + ++ + D E N E +
Sbjct: 61 RTEASVLVDTDHEVKIDLSVGQLLDFYGLLDEIGSQLLAITLQDHSTQDDE---VNEEGL 117
Query: 258 ARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINK------ 311
A + + + CG+C ++ ++ C H+YH CL + E+N
Sbjct: 118 AEQ------RAQLTLVQCGICGEMNGDI-DTCCNRCHHMYHHSCLGQLLVEVNAEREQGW 170
Query: 312 ------YDPACPVCTLGEKKTHKLSERALKSEMESKARNNK 346
Y+ P+ G ++ L +R + + RNN+
Sbjct: 171 SHCIFCYEQLVPLYISGARRVLSLQDRGVH---RGRVRNNR 208
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 273 DGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE----HRTCPMC 317
>sp|Q9H270|VPS11_HUMAN Vacuolar protein sorting-associated protein 11 homolog OS=Homo
sapiens GN=VPS11 PE=1 SV=1
Length = 941
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 256 KIARSCSRVSASSSVDMQT-CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDP 314
+I + + AS + +T C +C+ L EL V L CGH +H C E+ + D
Sbjct: 802 RIRQEIQELKASPKIFQKTKCSICNSAL-ELPSVHFL-CGHSFHQHCFESYSES----DA 855
Query: 315 ACPVCTLGEKKTHKLSERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRH-KGSWNE 373
CP C +K + RA E K + ++++++ SN DS SV+ D +G +N+
Sbjct: 856 DCPTCLPENRKVMDMI-RA----QEQKRDLHDQFQHQLRCSN-DSFSVIADYFGRGVFNK 909
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 331
+Q C +C + EL +L+C H++H CL+ NK CP+C + +T +
Sbjct: 124 VQPCPICKEEF-ELRPQVLLSCSHVFHRACLQAFEKFTNK--KTCPLCRKNQYQTRVIHG 180
Query: 332 RALKSEMESKARNNKRWKNRIV 353
A ++ R W+ +V
Sbjct: 181 GARLFRIKCVTRIQAYWRGYVV 202
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 276 DGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPWLLE----HRTCPMC 320
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 272 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 331
+Q C +C + EL +L+C H++H CL+ NK CP+C + +T + +
Sbjct: 124 VQPCPICKEEF-ELRPQVLLSCSHVFHKACLQAFEKFTNK--KTCPLCRKNQYQTRVIHD 180
Query: 332 RALKSEMESKARNNKRWKNRIV 353
A ++ R W+ +V
Sbjct: 181 GARLFRIKCVTRIQAYWRGCVV 202
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLS 330
D +C VC + VV +LTC H +H +C++ E CP+C K+ ++
Sbjct: 256 DGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWLLE----HRTCPMCKCDILKSLGIA 311
Query: 331 E 331
E
Sbjct: 312 E 312
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 262 SRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCL-ENITA-EINKYDPACPVC 319
++V + V TC +C KLL + ++ C H + C+ E IT EI +CPVC
Sbjct: 7 AKVKRETVVACMTCPLCDKLLRDATTIS--ECLHTFCRKCIYEKITEDEIE----SCPVC 60
Query: 320 --TLGEKKTHKLSERALKSEMESKARNNKRWKNR 351
LG KL + ++ +K KR K R
Sbjct: 61 DIDLGGTPLEKLRPDHILQDLRAKLFPLKRKKER 94
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 275 CGVCSKLLSELCVVAVLTCGHLYHADC-LENIT-AEINKYDPACPVCT--LGEKKTHKLS 330
C +C++ L +A+ CGH Y +C LE+ E N P CP C + + K KL
Sbjct: 916 CSICTQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPISKYKIFKLR 975
Query: 331 ERA---------LKSEMESKARNNK 346
R K EME ++N K
Sbjct: 976 HRDTSVKEIRFHTKQEMEDPSQNFK 1000
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 275 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPA----CPVCTLGEKK---TH 327
C +CS VA + CGH +H CL I ++ A CP C + K +
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCL------IQWFETAPSRTCPQCRIQVGKRTIIN 60
Query: 328 KL-------SERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGPKMA 380
KL E L +E +N R + D + V++D + + E + A
Sbjct: 61 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEE----RNA 116
Query: 381 SSSSLKSSSGK 391
+ SL+ + GK
Sbjct: 117 TVVSLQQALGK 127
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 33.5 bits (75), Expect = 3.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 273 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC--TLGEKKTHKLS 330
Q C +C ++ + + TCGHLY + CLE K+ +CP+C L + + +
Sbjct: 1090 QICIICRDIIKQGFIT---TCGHLYCSFCLEAWL----KHSSSCPMCKTKLNKNNAYYIG 1142
Query: 331 E-RALKSEMESKARNNKR 347
E R + S E NKR
Sbjct: 1143 ESRDIYSRQEFVTGFNKR 1160
>sp|Q757D9|BRE1_ASHGO E3 ubiquitin-protein ligase BRE1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BRE1
PE=3 SV=1
Length = 643
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 275 CGVCSKLLSELCVVAVLTCGHLYHADCL-ENITAEINKYDPACPVCTLG 322
C +CSK + + TCGH++ ADC E + A + K CP C G
Sbjct: 591 CSLCSKNWKD---TVIKTCGHVFCADCCKERLAARMRK----CPTCNKG 632
>sp|Q5QTZ3|DAPE_IDILO Succinyl-diaminopimelate desuccinylase OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=dapE PE=3
SV=1
Length = 376
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 81 SFPRHTWQKSPVSEGTAAGNVRTPTSDHSLSRNISMDVNLEQVKESTDSQEVSHPSPAKL 140
SFP T+Q S + GT AGNV D + S ++ E++K+ ++ H L
Sbjct: 226 SFPPTTFQVSNIQAGTGAGNVIPGRIDTQFNFRFSTELTAEKIKQRVEAILDKHSLKYHL 285
Query: 141 SLSLPSTSSLTSS 153
L LT S
Sbjct: 286 QWKLNGPPFLTES 298
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325
D C VC + + VV VL C H++H C++ +E CP+C L K
Sbjct: 260 DFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSE----HCTCPMCKLNILK 310
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325
D C VC + + VV VL C H++H C++ +E CP+C L K
Sbjct: 260 DFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSE----HCTCPMCKLNILK 310
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKL 329
+D + C VC + +V +L C H++H C++ E CP+C L K
Sbjct: 259 IDAENCAVCIENYKTKDLVRILPCKHIFHRLCIDPWLIE----HRTCPMCKLDVIK---- 310
Query: 330 SERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGPKMASSSSLKSSS 389
AL +E + + + I S+L +V + + + P ++ SSL+ S+
Sbjct: 311 ---ALGFWVEPEETLDIHVPDSIAGSSLSIGTVSITQEESRSEGNNLPSSSTGSSLQQSN 367
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 275 CGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEINKYDPACPVC--TLGEKKTHKLS 330
C +C E ++ L TC H++H +C++ E NK CPVC L +
Sbjct: 114 CAICLLEFEEEHILLRLLTTCYHVFHQECIDQ-WLESNK---TCPVCRRNLDPNAPENIK 169
Query: 331 ERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGPKMASSSSLKSSSG 390
E ++ E+ +NR + SN V+L R NE K + S ++G
Sbjct: 170 ELIIEVIQENAH------ENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTG 223
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDP------ACPVCTL 321
VD + C VC + V+ +L C H++H C+ DP CP+C L
Sbjct: 260 VDAENCAVCIENFKVKDVIRILPCKHIFHRICI----------DPWLLDHRTCPMCKL 307
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
D C +C ++ E +L CGH Y +CL++++ ++ + CPVC
Sbjct: 12 DQLQCPICLEVFKE---PLMLQCGHSYCKNCLDSLSEHLDS-ELRCPVC 56
>sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotinia fuckeliana (strain
B05.10) GN=dbp7 PE=3 SV=1
Length = 877
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 21/184 (11%)
Query: 74 EEGSPLDSFPRHTWQKSPVSEGTAAGNVRTPTSDHSLSRNISMDV---NLEQVKESTDSQ 130
EE L + P+ K ++ GT N P H L +++ ++ L+ ES D
Sbjct: 576 EEKVDLPALPKSELVKETIAHGTTISNNSNPVILHKLHGSLAQNIRTATLKAFSESADPC 635
Query: 131 EVSHPSPAKLSLSLPSTSSLTS--SPLSSQSHLYPASSTTAKWPRHSPGHPLLRQASDSR 188
+ A L LP+ + P S++ HL+ TA+ R L
Sbjct: 636 VMICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGR-TARAGREGRALIFL------- 687
Query: 189 IPGLK----SVNGYSVREERPVIPSWSNESTVGSGVGS-SDGWSMNAFSELMATSHKERW 243
+PG++ S+ RE + + + E + G G W A + + ERW
Sbjct: 688 MPGVEEEYVSILASGYREGKKALTRHTAEDLIQKGFGGIGREWEERATNFQLEV---ERW 744
Query: 244 SFDS 247
S DS
Sbjct: 745 SLDS 748
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 270 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 321
VD + C VC + ++ +L C H++H C++ + CP+C L
Sbjct: 264 VDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLD----HRTCPMCKL 311
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 271 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 325
D C VC + + VV +L C H++H C++ +E CP+C L K
Sbjct: 260 DFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSE----HCTCPMCKLNILK 310
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 264 VSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 319
VS+S + C VC + L CGH YH DC+ N +CPVC
Sbjct: 246 VSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRN----SCPVC 297
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 256 KIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPA 315
KI + S +D C +C + + +L C H +H +C++ E
Sbjct: 284 KIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIE----HRT 339
Query: 316 CPVCTLGEKKTH 327
CP+C L K +
Sbjct: 340 CPMCKLDVLKFY 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,160,789
Number of Sequences: 539616
Number of extensions: 6119787
Number of successful extensions: 17998
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 17126
Number of HSP's gapped (non-prelim): 695
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)