BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014294
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 64/320 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+T + LGTP + V +DTGS LWV C G +A
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
C F + Y++ S E+ + YG G S GY +D + + + + A
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
+ F G + G LG D +VD ++ K FA L D
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
K GG G + K K T V ++ V E + +G +L +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVT 371
G ID+GT+L LP L +++ ++I ++ +T++ C N D P +
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQYTLD----C-----NTRDNLPDLI 262
Query: 372 FKFKGSLSLTVYPHEYLFQI 391
F F G + T+ P++Y ++
Sbjct: 263 FNFNG-YNFTIGPYDYTLEV 281
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 64/320 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+T + LGTP + V +DTGS LWV C G +A
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
C F + Y++ S E+ + YG G S GY +D + + + + A
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
+ F G + G LG D +VD ++ K FA L D
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
K GG G + K K T V ++ V E + +G +L +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVT 371
G ID+GT+L LP L +++ ++I ++ +T++ C N D P +
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLD----C-----NTRDNLPDLI 262
Query: 372 FKFKGSLSLTVYPHEYLFQI 391
F F G + T+ P++Y ++
Sbjct: 263 FNFNG-YNFTIGPYDYTLEV 281
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 64/320 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+T + LGTP + V +DTGS LWV C G +A
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
C F + Y++ S E+ + YG G S GY +D + + + + A
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
+ F G + G LG D +VD ++ K FA L D
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
K GG G + K K T V ++ V E + +G +L +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVT 371
G ID+GT+L LP L +++ ++I ++ +T++ C N D P +
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLD----C-----NTRDNLPDLI 262
Query: 372 FKFKGSLSLTVYPHEYLFQI 391
F F G + T+ P++Y ++
Sbjct: 263 FNFNG-YNFTIGPYDYTLEV 281
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 28/106 (26%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+ +V +GTP ++ + DTGS LW+ C+ C G + T +DP++SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSRQTKYDPNQSSTYQADG 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL 188
RT + ++YGDGSS SG +D + L
Sbjct: 71 ------RT----------------WSISYGDGSSASGILAKDNVNL 94
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 28/106 (26%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+ +V +GTP ++ + DTGS LW+ C+ C G T +DP++SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQTKYDPNQSSTYQADG 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL 188
RT + ++YGDGSS SG +D + L
Sbjct: 71 ------RT----------------WSISYGDGSSASGILAKDNVNL 94
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 141/387 (36%), Gaps = 73/387 (18%)
Query: 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDP----- 132
++T Y T + TP + VD G LWV+C D + + P
Sbjct: 17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC----------DQNYVSSTYRPVRCRT 66
Query: 133 SKSSTSGEIACSDNFCRTTYNNRYPSCSP---GVRCEYVVTYGDGSSTSGYFVRDIIQLN 189
S+ S SG IAC D F N P C+ GV E V ++T G D++ +
Sbjct: 67 SQCSLSGSIACGDCF-----NGPRPGCNNNTCGVFPENPVI---NTATGGEVAEDVVSVE 118
Query: 190 ----QASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXX 245
+SG + T P IF C L + + V G+ G
Sbjct: 119 STDGSSSGRVVTVP---RFIFSCA---PTSLLQNLASGVVGMAGLGRTRIALPSQFASAF 172
Query: 246 XVRKEFAHCLD-VVKGGGIFAIGD---------VVSPKVKT-TPMVPN------------ 282
+++FA CL + G+ +VS K T TP++ N
Sbjct: 173 SFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGE 232
Query: 283 -MPHYNVILEEVEVGGNPLDLPTSLLGTGDE--RGTIIDSGTTLAYLPPMLYDLVLSQIL 339
Y + ++ +++ + L TSLL GT I + L +Y V +
Sbjct: 233 PSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFI 292
Query: 340 DRQPG---LKMHTVEEQFSCFQ----FSKNVDDAFPTVTFKFKG-SLSLTVYPHEYLFQI 391
++ +V +CF S + + P++ + S+ T+ + I
Sbjct: 293 KESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYI 352
Query: 392 REDVWCIGWQNGGLQNHDGRQMILLGG 418
++V C+G +GG + R I++GG
Sbjct: 353 NDNVVCLGVVDGG---SNLRTSIVIGG 376
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 141/387 (36%), Gaps = 73/387 (18%)
Query: 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDP----- 132
++T Y T + TP + VD G LWV+C D + + P
Sbjct: 17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC----------DQNYVSSTYRPVRCRT 66
Query: 133 SKSSTSGEIACSDNFCRTTYNNRYPSCSP---GVRCEYVVTYGDGSSTSGYFVRDIIQLN 189
S+ S SG IAC D F N P C+ GV E V ++T G D++ +
Sbjct: 67 SQCSLSGSIACGDCF-----NGPRPGCNNNTCGVFPENPVI---NTATGGEVAEDVVSVE 118
Query: 190 ----QASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXX 245
+SG + T P IF C L + + V G+ G
Sbjct: 119 STDGSSSGRVVTVP---RFIFSCA---PTSLLQNLASGVVGMAGLGRTRIALPSQFASAF 172
Query: 246 XVRKEFAHCLD-VVKGGGIFAIGD---------VVSPKVKT-TPMVPN------------ 282
+++FA CL + G+ +VS K T TP++ N
Sbjct: 173 SFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGE 232
Query: 283 -MPHYNVILEEVEVGGNPLDLPTSLLGTGDE--RGTIIDSGTTLAYLPPMLYDLVLSQIL 339
Y + ++ +++ + L TSLL GT I + L +Y V +
Sbjct: 233 PSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFI 292
Query: 340 DRQPG---LKMHTVEEQFSCFQ----FSKNVDDAFPTVTFKFKG-SLSLTVYPHEYLFQI 391
++ +V +CF S + + P++ + S+ T+ + I
Sbjct: 293 KESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYI 352
Query: 392 REDVWCIGWQNGGLQNHDGRQMILLGG 418
++V C+G +GG + R I++GG
Sbjct: 353 NDNVVCLGVVDGG---SNLRTSIVIGG 376
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 32/147 (21%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y V +GTP ++Y+ DTGS WV GC S+ + FDPS SST
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDN----SEGCVGKRFFDPSSSST----- 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
F T YN +TYG G + YF RD I + A+ +T
Sbjct: 71 ----FKETDYNLN-------------ITYGTGGANGIYF-RDSITVGGATVKQQTLAYVD 112
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILG 229
+V G QS D ++ +DGI G
Sbjct: 113 NVS-GPTAEQSPD----SELFLDGIFG 134
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF K+ +GTP E+ V DTGS LWV C KS++ FDP KSST
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYC-----KSNVCKNHHRFDPRKSST 62
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 93
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 94 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 141
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 142 NQIFGLSETEPGSFLYY--APFDGILGL 167
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 93
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 94 CSD---HNQFNPDDSSTFEATXQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 141
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 142 NQIFGLSETEPGSFLYY--APFDGILGL 167
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 127/340 (37%), Gaps = 70/340 (20%)
Query: 66 SIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGI 125
SI L L G PS Y +KV +G+ + V +DTGS WV ++C D
Sbjct: 2 SISLSLINEG-PS----YASKVSVGSNKQQQTVIIDTGSSDFWV-VDSNAQCGKGVDCKS 55
Query: 126 KLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDI 185
T F PS SS+ Y N + + + YGDGS++ G + +D
Sbjct: 56 SGT-FTPSSSSS--------------YKN--------LGAAFTIRYGDGSTSQGTWGKDT 92
Query: 186 IQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVD-GILGFXXXXXXXXXXXXXX 244
+ +N S I G +Q D+ T +VD GILG
Sbjct: 93 VTINGVS------------ITG---QQIADV---TQTSVDQGILGIGYTSNEAVYDTSGR 134
Query: 245 XXVRKEFAHCLDVVKGGGIFAIGDVV---SPKVKTTPM----VPNMPHYNVILEEVEVGG 297
+ + K G I + SP +T + V N + ++ E
Sbjct: 135 QTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSS 194
Query: 298 NPL-------DLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTV 350
L +L S GD G ++DSGTTL Y P +Q+ D+ +
Sbjct: 195 QALTISLASVNLKGSSFSFGD--GALLDSGTTLTYFPSDF----AAQLADKAGARLVQVA 248
Query: 351 EEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQ 390
+Q+ F N D + TV F F +TV EY++Q
Sbjct: 249 RDQYLYF-IDCNTDTSGTTV-FNFGNGAKITVPNTEYVYQ 286
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF K+ LGTP E+ V DTGS WV C KS+ FDP KSST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC-----KSNACKNHQRFDPRKSST 65
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 64
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF K+ LGTP E+ V DTGS WV C KS+ FDP KSST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC-----KSNACKNHQRFDPRKSST 65
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 68
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 67
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 114
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 207 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 263
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 264 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 321
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATXQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 260
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 261 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 318
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 205 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 261
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 262 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 319
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATXQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ ++ I
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVASIKAASST 270
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 271 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 328
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 260
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 261 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 318
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 207 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 263
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 264 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 321
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 261 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 317
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 318 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 375
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 258
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 259 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 316
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 203 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 259
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 260 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 317
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 260 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 316
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 317 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 374
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 258
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 259 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 316
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 258
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 259 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 316
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 261 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 317
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 318 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 375
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 199 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 255
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 256 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 313
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 258
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 259 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 316
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 260
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 261 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 318
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 201 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 257
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 258 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 315
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 190 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 246
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 247 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 304
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 219 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 275
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 276 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 333
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 224 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 280
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 281 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 338
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 270
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 271 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 328
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 198 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 254
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 255 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPV-EDV 312
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 258
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 259 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 316
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 215 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 271
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 272 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 329
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 270
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 271 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 328
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 238 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 294
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 295 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 352
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 221 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 277
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 278 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 335
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 201 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 257
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 258 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPV-EDV 315
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 274
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 275 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 332
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 219 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 275
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 276 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 333
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 270
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 271 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 328
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 216 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 272
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 273 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 330
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 238 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 294
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 295 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 352
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 270
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 271 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 328
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 26/103 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y V +GTP ++ + DTGS WV GC TKS+ + FDPS SST
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGC----TKSEGCVGSRFFDPSASST----- 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDI 185
F T YN +TYG G + YF I
Sbjct: 71 ----FKATNYNLN-------------ITYGTGGANGLYFEDSI 96
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 273
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 274 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 331
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 273
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 274 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 331
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 58/148 (39%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS + F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-----NRFNPEDSST----- 63
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
Y S S V +TYG GS T G D +Q+ S ++
Sbjct: 64 -------------YQSTSETVS----ITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSF--LYYAPFDGILGL 123
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + +I+DSGTT LP +++ + I
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFEAAVKSIKAASST 273
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 274 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPV-EDV 331
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG 344
+Y VI+ VE+ G L + + +I+DSGTT LP +++ + I
Sbjct: 199 YYEVIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST 255
Query: 345 LKM---HTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYLFQIREDV 395
K + EQ C+Q + FP ++ G S +T+ P +YL + EDV
Sbjct: 256 EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPV-EDV 313
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 58/148 (39%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS + F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-----NRFNPEDSST----- 63
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
Y S S V +TYG GS T G D +Q+ S ++
Sbjct: 64 -------------YQSTSETVS----ITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSF--LYYAPFDGILGL 123
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 135/349 (38%), Gaps = 71/349 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF ++ +GTP + V DTGS LWV C +S + F+PS+SS
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYC-----QSQACTSHSRFNPSESS------ 62
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
TY+ + S + YG GS T G+F D + + P
Sbjct: 63 --------TYSTNGQTFS--------LQYGSGSLT-GFFGYDTLTVQSIQ-----VPNQE 100
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXXXVRKE-------FAHCL 255
FG + G + A DGI+G + +E F+ L
Sbjct: 101 ---FGLSENEPGT--NFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYL 155
Query: 256 DVVKG--GGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGT 309
+G GG G V S ++ P+ + ++ + +EE +GG +
Sbjct: 156 SNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQEL-YWQIGIEEFLIGGQ----ASGWCSE 210
Query: 310 GDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPT 369
G + I+D+GT+L +P Y L Q Q E+++ F + N P+
Sbjct: 211 GCQ--AIVDTGTSLLTVPQQ-YMSALLQATGAQ--------EDEYGQFLVNCNSIQNLPS 259
Query: 370 VTFKFKGSLSLTVYPHEYLFQIREDVWC-IGWQNGGLQNHDGRQMILLG 417
+TF G + + P Y+ + + +C +G + L + +G+ + +LG
Sbjct: 260 LTFIING-VEFPLPPSSYI--LSNNGYCTVGVEPTYLSSQNGQPLWILG 305
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 41 AGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQV 100
+GGE + LS + G ++A + YF ++G+GTP ++ V
Sbjct: 21 SGGEEQPLLSGANPLRSEEEGDIVALKNY---------MNAQYFGEIGVGTPPQKFTVIF 71
Query: 101 DTGSDLLWVNCAGC 114
DTGS LWV A C
Sbjct: 72 DTGSSNLWVPSAKC 85
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWV---NCAGCSRCPTKSDLGIKLTLFDPSKSSTSG 139
YF ++G+GTP ++ V DTGS +LWV C C S +++ S SST
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS-------MYESSDSSTYK 67
Query: 140 E 140
E
Sbjct: 68 E 68
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 110/308 (35%), Gaps = 60/308 (19%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ + V VDTGS LWV T SD
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQ------------------- 54
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL------NQASGN 194
+ +FC+ TY+ S S + + + YGDGSS+ G +D + NQ +
Sbjct: 55 -TADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLAD 113
Query: 195 LKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXXXVRKEFAHC 254
+ + ++ I G G + + GS + V + +
Sbjct: 114 VDSTSIDQG-ILGVGYKTNEAGGSYDNVPV-----------TLKKQGVIAKNAYSLYLNS 161
Query: 255 LDVVKGGGIFAIGDVVSPKVKTTPM---VPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
D G IF G V + K + + V + + L VEV G ++ D
Sbjct: 162 PDAATGQIIF--GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--------D 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLS----QILDRQPGLKMHTVEEQFS---CFQFSKNVD 364
++DSGTT+ YL L D ++ ++ G + V+ S F FSKN
Sbjct: 212 NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAK 271
Query: 365 DAFPTVTF 372
+ P F
Sbjct: 272 ISVPASEF 279
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 113/308 (36%), Gaps = 60/308 (19%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ + V VDTGS LWV ++ ++T D +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---------PDVNIDCQVTYSDQTA-------- 56
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL------NQASGN 194
+FC+ TY+ S S + + + YGDGSS+ G +D + NQ +
Sbjct: 57 ---DFCKQKGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLAD 113
Query: 195 LKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXXXVRKEFAHC 254
+ + ++ I G G + + GS + V + +
Sbjct: 114 VDSTSIDQG-ILGVGYKTNEAGGSYDNVPV-----------TLKKQGVIAKNAYSLYLNS 161
Query: 255 LDVVKGGGIFAIGDVVSPKVKTTPM---VPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
D G IF G V + K + + V + + L VEV G ++ D
Sbjct: 162 PDSATGQIIF--GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--------D 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLS----QILDRQPGLKMHTVEEQFS---CFQFSKNVD 364
++DSGTT+ YL L D ++ ++ G + V+ S F FSKN
Sbjct: 212 NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAK 271
Query: 365 DAFPTVTF 372
+ P F
Sbjct: 272 ISVPASDF 279
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR 116
Y+ ++G+GTP + V DTGS LWV CSR
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSR 50
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF + +G+P + V DTGS LWV C+ K+ + F PS+SST
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH-----SRFQPSQSST 74
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 133/378 (35%), Gaps = 71/378 (18%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
+TGL++ + TP + V VD + LWVNC S T
Sbjct: 19 STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE------------------QQYSSKTY 60
Query: 139 GEIACSDNFCRTTYNNRYPSCSPGVR-------CEYVVTYGDGSSTS-GYFVRDIIQLN- 189
C C ++ SC R C + T T G D++ ++
Sbjct: 61 QAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHA 120
Query: 190 -----QASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXX 244
Q G L T P +F C S + G+ G
Sbjct: 121 TQGSTQQLGPLVTVP---QFLFSCA--PSFLVQKGLPRNTQGVAGLGHAPISLPNQLASH 175
Query: 245 XXVRKEFAHCLD---VVKGGGIFAIGDV-----------VSPKVKTTPMVPNMP-HYNVI 289
++++F CL KG IF GD + + TP+ + YNV
Sbjct: 176 FGLQRQFTTCLSRYPTSKGAIIF--GDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVR 233
Query: 290 LEEVEVGGN---PLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDL---VLSQILDRQP 343
+ + + + PL+ +S + GT+I + T L +Y V +Q L +Q
Sbjct: 234 VNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQA 293
Query: 344 GLKMHTVEEQFSCFQFSKNVDDAFPTVTF---KFKGSLSLTVYPHEYLFQIREDVWCIGW 400
+K +V CF + N +A+P+V K G + + + + Q + V C+G
Sbjct: 294 QVK--SVAPFGLCF--NSNKINAYPSVDLVMDKPNGPV-WRISGEDLMVQAQPGVTCLGV 348
Query: 401 QNGGLQNHDGRQMILLGG 418
NGG+Q R I LG
Sbjct: 349 MNGGMQ---PRAEITLGA 363
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVL------SQI 338
+Y + + ++E+GG L+L + I+DSGTTL LP ++D V+ S I
Sbjct: 196 YYQIEILKLEIGGQSLNLDCREY---NADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI 252
Query: 339 LDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKG-----SLSLTVYPHEYL 388
+ G + Q +C+ S+ FP ++ + S +T+ P Y+
Sbjct: 253 PEFSDGFWTGS---QLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYI 304
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ + +GTP + + V DTGS LWV+ + CS + F P +SST
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH-----NKFKPRQSST 63
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ ++ V VDTGS LWV D + P +S+
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWV-----------PDASVTCDKPRPGQSA------ 56
Query: 143 CSDNFCRTT--YNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
+FC+ Y + + S + + + YGDGSS+ G +D + AS
Sbjct: 57 ---DFCKGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGAS 105
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S+ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASE--VXQTIYTPSKSTTA 66
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S+ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASE--VXQTIYTPSKSTTA 66
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSS 136
A +Y+ + +G ++ DTGS LWV A C+ C TK+ L+D +KS
Sbjct: 19 ANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKN-------LYDSNKSK 71
Query: 137 TSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
T Y V YV + SG+F +DI+ + S
Sbjct: 72 T------------------YEKDGTKVEMNYV-----SGTVSGFFSKDIVTIANLS 104
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 22/106 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ + V +DTGS LWV +D ++T SG+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWV---------VDTDAECQVTY--------SGQ-- 54
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDII 186
++NFC+ T++ S + + ++ + YGD +S+ G F +D +
Sbjct: 55 -TNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTV 99
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGC 114
Y+ ++G+GTP + V DTGS LWV C
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S++ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASEVDGQ-TIYTPSKSTTA 67
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S++ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASEVDGQ-TIYTPSKSTTA 67
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 76 HPS--ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWV 109
HPS A Y T V +GTP + DTGS LWV
Sbjct: 8 HPSDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWV 43
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 122/335 (36%), Gaps = 93/335 (27%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPT-KSDLGIKLTLFDPSKSSTSGEI 141
Y + +G+ + V VDTGS LW+ + P + D G
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKG----------------- 56
Query: 142 ACSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL------NQASG 193
+FC++ +Y+ S + + + YGDGS G +D + + +Q
Sbjct: 57 ----DFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFA 112
Query: 194 NLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVD---------GILGFXXXXXXXXXXXXXX 244
N+ + I G G + G +T+ D GI+G
Sbjct: 113 NVWSTSARKG-ILGIGFQS----GEATEFDYDNLPISLRNQGIIG--------------- 152
Query: 245 XXVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMP-----HYNVILEEVEVGGNP 299
+ + + G IF D K K + + ++P V L V V G
Sbjct: 153 KAAYSLYLNSAEASTGQIIFGGID----KAKYSGSLVDLPITSEKKLTVGLRSVNVRGRN 208
Query: 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVL----SQILDRQPGLKMHTVEEQFS 355
+D T++L +DSGTT++Y + +L +Q+ G K++ + + S
Sbjct: 209 VDANTNVL---------LDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCKTS 259
Query: 356 CFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQ 390
T+ F+F +L ++V E+LFQ
Sbjct: 260 G------------TIDFQFGNNLKISVPVSEFLFQ 282
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + + +G+ + V +DTGS LWV P D S +G+
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWV--------P------------DSQVSCQAGQ-G 52
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDII 186
NFC+ TY+ S S + + + YGDG+++ G + +D I
Sbjct: 53 QDPNFCKNEGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTI 98
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSS 136
A +++ + +GT + DTGS LWV C C TK L+D S S
Sbjct: 12 ANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKH-------LYDASASK 64
Query: 137 TSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
+ + G + E ++YG G + GYF +D+I L S
Sbjct: 65 SYEK--------------------DGTKVE--ISYGSG-TVRGYFSKDVISLGDLS 97
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 167 YVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCG-NRQSGDLGSSTD 221
Y + +G +ST YF +DI+ Q N ++ + ++ + +R S LG S D
Sbjct: 433 YRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHNEDRTSSKLGKSAD 488
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNC 111
Y VG+G+P Y + VDTGS W+
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGA 42
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 167 YVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCG-NRQSGDLGSSTD 221
Y + +G +ST YF +DI+ Q N ++ + ++ + +R S LG S D
Sbjct: 433 YRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSAD 488
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 32/116 (27%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSS 136
A +++ + +G ++ + DTGS LWV C+ C TK L+D SKS
Sbjct: 12 ANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH-------LYDSSKSK 64
Query: 137 TSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
+ + G + E +TYG G + G+F +D++ L S
Sbjct: 65 SYEK--------------------DGTKVE--ITYGSG-TVRGFFSKDLVTLGYLS 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,337,556
Number of Sequences: 62578
Number of extensions: 527950
Number of successful extensions: 1142
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 161
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)