Query 014294
Match_columns 427
No_of_seqs 204 out of 1778
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:44:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.7E-59 3.6E-64 467.4 41.2 372 28-426 22-412 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.5E-54 3.3E-59 429.6 32.8 330 74-427 38-378 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 2E-52 4.4E-57 418.4 30.9 292 74-426 112-432 (482)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 6.8E-51 1.5E-55 394.3 29.6 294 78-426 2-312 (325)
5 cd05477 gastricsin Gastricsins 100.0 7.6E-51 1.7E-55 392.8 29.4 288 80-426 1-304 (318)
6 cd05486 Cathespin_E Cathepsin 100.0 4.3E-51 9.3E-56 394.1 27.3 284 83-426 1-303 (316)
7 cd05478 pepsin_A Pepsin A, asp 100.0 7.9E-51 1.7E-55 392.4 29.1 285 77-426 5-304 (317)
8 cd05472 cnd41_like Chloroplast 100.0 9.2E-50 2E-54 382.1 29.8 274 82-426 1-283 (299)
9 cd06096 Plasmepsin_5 Plasmepsi 100.0 7E-50 1.5E-54 387.0 29.2 287 81-426 2-309 (326)
10 cd06098 phytepsin Phytepsin, a 100.0 1.2E-49 2.5E-54 384.0 29.4 280 77-426 5-304 (317)
11 cd05487 renin_like Renin stimu 100.0 1.8E-49 4E-54 384.2 29.6 292 77-426 3-312 (326)
12 cd05485 Cathepsin_D_like Cathe 100.0 1.7E-49 3.8E-54 384.5 29.1 295 76-426 5-316 (329)
13 cd05489 xylanase_inhibitor_I_l 100.0 3.4E-49 7.3E-54 385.1 31.2 312 89-426 2-347 (362)
14 cd05488 Proteinase_A_fungi Fun 100.0 2.8E-49 6E-54 382.0 29.0 288 77-426 5-307 (320)
15 PTZ00147 plasmepsin-1; Provisi 100.0 8.3E-48 1.8E-52 382.4 30.4 285 77-426 134-435 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-47 2.7E-52 380.4 29.7 285 77-426 133-434 (450)
17 cd05473 beta_secretase_like Be 100.0 6.7E-47 1.4E-51 371.7 28.3 297 81-426 2-331 (364)
18 cd05475 nucellin_like Nucellin 100.0 2.6E-46 5.7E-51 353.1 28.5 249 81-426 1-257 (273)
19 cd05476 pepsin_A_like_plant Ch 100.0 4.8E-45 1.1E-49 343.2 25.8 238 82-426 1-249 (265)
20 cd06097 Aspergillopepsin_like 100.0 7.1E-45 1.5E-49 344.6 24.4 252 83-426 1-265 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 6.5E-44 1.4E-48 344.6 18.4 287 82-426 1-303 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 1.8E-42 4E-47 331.1 24.9 253 82-426 2-281 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.4E-41 7.3E-46 320.2 25.8 255 83-426 1-270 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.8E-31 6.1E-36 230.5 15.8 162 83-268 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 5E-23 1.1E-27 166.8 11.8 108 85-230 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.8 8.3E-21 1.8E-25 164.7 11.3 139 285-426 1-148 (161)
27 cd05483 retropepsin_like_bacte 97.8 6.6E-05 1.4E-09 58.5 6.2 94 81-232 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.6 0.056 1.2E-06 44.2 7.2 31 79-111 8-38 (121)
29 PF13650 Asp_protease_2: Aspar 94.4 0.23 5E-06 37.6 7.4 25 86-112 2-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.0 0.64 1.4E-05 38.0 8.1 33 79-113 13-45 (124)
31 cd05484 retropepsin_like_LTR_2 92.7 0.13 2.9E-06 39.5 3.4 29 83-113 1-29 (91)
32 TIGR02281 clan_AA_DTGA clan AA 88.9 0.82 1.8E-05 37.3 4.8 36 283-334 9-44 (121)
33 PF13975 gag-asp_proteas: gag- 88.7 0.75 1.6E-05 33.6 4.1 35 79-115 5-39 (72)
34 PF13650 Asp_protease_2: Aspar 87.8 0.73 1.6E-05 34.8 3.7 30 292-334 2-31 (90)
35 PF12384 Peptidase_A2B: Ty3 tr 86.0 3.3 7.2E-05 35.2 6.8 21 315-335 48-68 (177)
36 PF13975 gag-asp_proteas: gag- 85.4 1.6 3.5E-05 31.8 4.3 31 291-334 11-41 (72)
37 PF00077 RVP: Retroviral aspar 84.9 1.3 2.8E-05 34.4 3.9 28 84-113 7-34 (100)
38 cd05484 retropepsin_like_LTR_2 84.6 1.4 3.1E-05 33.6 3.9 30 292-334 4-33 (91)
39 cd05483 retropepsin_like_bacte 84.4 1.9 4.1E-05 32.8 4.6 31 291-334 5-35 (96)
40 cd06095 RP_RTVL_H_like Retrope 80.1 2.2 4.8E-05 32.2 3.4 29 293-334 3-31 (86)
41 cd05482 HIV_retropepsin_like R 77.7 3 6.5E-05 31.8 3.4 25 86-112 2-26 (87)
42 PF08284 RVP_2: Retroviral asp 76.4 8.1 0.00018 32.1 6.0 34 287-333 20-53 (135)
43 cd06095 RP_RTVL_H_like Retrope 76.1 3.3 7.1E-05 31.3 3.3 26 86-113 2-27 (86)
44 cd05479 RP_DDI RP_DDI; retrope 74.2 4.5 9.8E-05 33.0 3.9 30 292-334 20-49 (124)
45 PF00077 RVP: Retroviral aspar 70.8 3.4 7.3E-05 32.0 2.3 27 291-330 8-34 (100)
46 COG3577 Predicted aspartyl pro 67.4 12 0.00026 33.2 5.0 35 283-333 103-137 (215)
47 cd06094 RP_Saci_like RP_Saci_l 67.1 21 0.00045 27.2 5.7 77 312-424 9-87 (89)
48 cd05481 retropepsin_like_LTR_1 64.6 7.6 0.00016 29.9 3.1 21 315-335 13-33 (93)
49 PF09668 Asp_protease: Asparty 64.1 8.7 0.00019 31.4 3.4 31 291-334 27-57 (124)
50 COG3577 Predicted aspartyl pro 55.3 19 0.00041 32.0 4.2 74 78-192 101-174 (215)
51 PF05984 Cytomega_UL20A: Cytom 49.4 22 0.00048 26.4 3.1 23 2-24 1-23 (100)
52 PF12384 Peptidase_A2B: Ty3 tr 47.7 26 0.00055 30.0 3.6 28 84-111 34-61 (177)
53 COG5550 Predicted aspartyl pro 47.3 12 0.00027 30.2 1.7 20 315-334 29-49 (125)
54 PF09668 Asp_protease: Asparty 46.7 9.8 0.00021 31.1 1.0 38 79-118 21-58 (124)
55 PF02160 Peptidase_A3: Caulifl 46.0 13 0.00028 33.0 1.7 18 314-331 22-39 (201)
56 TIGR03698 clan_AA_DTGF clan AA 45.9 15 0.00032 29.1 1.9 22 313-334 17-39 (107)
57 cd05470 pepsin_retropepsin_lik 44.0 21 0.00045 27.8 2.6 17 314-330 13-29 (109)
58 PF13956 Ibs_toxin: Toxin Ibs, 40.9 17 0.00037 18.6 1.0 12 1-12 1-12 (19)
59 TIGR03698 clan_AA_DTGF clan AA 39.0 39 0.00084 26.7 3.4 27 85-111 2-33 (107)
60 cd00303 retropepsin_like Retro 32.3 80 0.0017 22.1 4.1 19 315-333 12-30 (92)
61 PF07172 GRP: Glycine rich pro 31.4 42 0.00092 26.0 2.3 13 4-16 3-15 (95)
62 cd05480 NRIP_C NRIP_C; putativ 28.2 84 0.0018 24.6 3.4 28 293-333 3-30 (103)
63 cd06097 Aspergillopepsin_like 27.4 56 0.0012 30.5 3.0 16 315-330 16-31 (278)
64 PF07172 GRP: Glycine rich pro 22.8 63 0.0014 25.0 2.0 14 4-17 6-19 (95)
65 PF08284 RVP_2: Retroviral asp 21.6 1.3E+02 0.0028 24.9 3.7 31 80-112 19-49 (135)
66 cd05475 nucellin_like Nucellin 20.7 1.1E+02 0.0024 28.4 3.6 32 81-112 157-194 (273)
67 cd05474 SAP_like SAPs, pepsin- 20.7 95 0.0021 29.0 3.2 13 315-327 18-30 (295)
68 cd06096 Plasmepsin_5 Plasmepsi 20.4 1.2E+02 0.0025 29.1 3.8 15 315-329 19-33 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.7e-59 Score=467.36 Aligned_cols=372 Identities=27% Similarity=0.484 Sum_probs=293.4
Q ss_pred ccceeEEEEeccCCCCC-------ChhhHHHHHHHhHhhhhhhccc--cccccCCCCCCCCCceEEEEEEeCCCCceEEE
Q 014294 28 MGNFVFEVENKFKAGGE-------RERTLSALKQHDTRRHGRMMAS--IDLELGGNGHPSATGLYFTKVGLGTPTDEYYV 98 (427)
Q Consensus 28 ~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~Y~~~i~vGtP~q~~~v 98 (427)
...++++|.|+.++... ..+.+.+..+|+++|.+++.+. ...++.. .....+++|+++|.||||||++.|
T Consensus 22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Y~v~i~iGTPpq~~~v 100 (431)
T PLN03146 22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNGGEYLMNISIGTPPVPILA 100 (431)
T ss_pred CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCCccEEEEEEcCCCCceEEE
Confidence 35788999999875321 2355667777788777666321 2234432 223467899999999999999999
Q ss_pred EEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCCCCcceeeEEcCCCCeee
Q 014294 99 QVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTS 178 (427)
Q Consensus 99 ~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~~~~~~~~Y~~g~~~~ 178 (427)
++||||+++||+|.+|..|..+. ++.|||++|+||+.++|+++.|..... ...|..++.|.|.+.|+||+.+.
T Consensus 101 i~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~~~c~y~i~Ygdgs~~~ 173 (431)
T PLN03146 101 IADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDENTCTYSYSYGDGSFTK 173 (431)
T ss_pred EECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCCCCCCeeEEEeCCCCcee
Confidence 99999999999999999998764 379999999999999999999986543 23576667799999999999889
Q ss_pred eeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHHHhcCCCCCceeeecccc
Q 014294 179 GYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVV 258 (427)
Q Consensus 179 G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~~~i~~~Fs~~l~~~ 258 (427)
|.+++|+|+|++..+. ...++++.|||++...+.|. ...+||||||++..|++.||... ++++||+||.+.
T Consensus 174 G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~ 244 (431)
T PLN03146 174 GNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPL 244 (431)
T ss_pred eEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCC
Confidence 9999999999875332 12456899999998876552 24789999999999999999763 556999999753
Q ss_pred ----CCcceEEeCCcCC---CCceeecCCCC--CCcceEEEEEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHH
Q 014294 259 ----KGGGIFAIGDVVS---PKVKTTPMVPN--MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPM 329 (427)
Q Consensus 259 ----~~~G~l~~Gg~d~---~~~~~~p~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~ 329 (427)
...|.|+||+... ..+.|+|++.+ +.+|.|.|++|+||++.+.++...|...+.+++||||||++++||++
T Consensus 245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred CCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 2479999998542 23889999843 46899999999999999988776664334567999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccc-cCCCCceeeecCCCCccCceEEEEecCCcEEEECCCceEEEeCCceEEEEEEeCCCCCC
Q 014294 330 LYDLVLSQILDRQPGLKMHT-VEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNH 408 (427)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~i~~~~~~~~ 408 (427)
+|++|.+++.+.+....... ......||..... ..+|+|+|+| +|+.+.|++++|++...++..|+++....
T Consensus 325 ~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~---- 397 (431)
T PLN03146 325 FYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAMIPTS---- 397 (431)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEEecCC----
Confidence 99999999987765322111 1123689975332 4689999999 68999999999999877777999987542
Q ss_pred CCCCeEEEcccccccccC
Q 014294 409 DGRQMILLGGTVYSCFML 426 (427)
Q Consensus 409 ~~~~~~ilG~~fLr~~yv 426 (427)
+.||||+.|||++||
T Consensus 398 ---~~~IlG~~~q~~~~v 412 (431)
T PLN03146 398 ---SIAIFGNLAQMNFLV 412 (431)
T ss_pred ---CceEECeeeEeeEEE
Confidence 359999999999997
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-54 Score=429.57 Aligned_cols=330 Identities=35% Similarity=0.628 Sum_probs=270.9
Q ss_pred CCCCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC-CCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcC
Q 014294 74 NGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS-RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTY 152 (427)
Q Consensus 74 ~~~~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~-~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~ 152 (427)
.......++|+++|.||||||+|.|++||||+++||+|..|. .|..+.. +.|||++|||++.+.|.++.|....
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCccccccc
Confidence 344567789999999999999999999999999999999999 7987432 4599999999999999999999876
Q ss_pred CCCCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCC
Q 014294 153 NNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQ 232 (427)
Q Consensus 153 ~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~ 232 (427)
.. |..++.|.|.+.|+||+.++|++++|+|+|++.+ ...++++.|||+..+.+. .... .+.+||||||+
T Consensus 113 ~~----~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~ 181 (398)
T KOG1339|consen 113 QS----CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGR 181 (398)
T ss_pred cC----cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCC
Confidence 43 8888999999999997779999999999998853 134567999999999775 2212 56899999999
Q ss_pred CCCcHHHHHHhcCCCCCceeeeccccC----CcceEEeCCcCCCC----ceeecCCCCCC-cceEEEEEEEECCEEeeCC
Q 014294 233 ANSSLLSQLAAAGNVRKEFAHCLDVVK----GGGIFAIGDVVSPK----VKTTPMVPNMP-HYNVILEEVEVGGNPLDLP 303 (427)
Q Consensus 233 ~~~s~~~~l~~~~~i~~~Fs~~l~~~~----~~G~l~~Gg~d~~~----~~~~p~~~~~~-~~~v~l~~i~v~~~~~~~~ 303 (427)
+.++++.|+.......++||+||.+.. .+|.|+||++|+++ +.|+||+.... +|.|.+++|+||++. .++
T Consensus 182 ~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~ 260 (398)
T KOG1339|consen 182 GSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIG 260 (398)
T ss_pred CCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCC
Confidence 999999999998776678999999863 47999999999774 77999995443 999999999999977 555
Q ss_pred CCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEEC
Q 014294 304 TSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVY 383 (427)
Q Consensus 304 ~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~ 383 (427)
...+..+ ..++|+||||++++||.++|++|.+++.+..+. ......+...||...... ..+|.|+|+|.+|+.|.++
T Consensus 261 ~~~~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~ 337 (398)
T KOG1339|consen 261 SSLFCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLP 337 (398)
T ss_pred cceEecC-CCCEEEECCcceeeccHHHHHHHHHHHHhheec-cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeC
Confidence 5555433 588999999999999999999999999986410 111222336898765433 4599999999659999999
Q ss_pred CCceEEEeCCceE-EEEEEeCCCCCCCCCCeEEEcccccccccCC
Q 014294 384 PHEYLFQIREDVW-CIGWQNGGLQNHDGRQMILLGGTVYSCFMLN 427 (427)
Q Consensus 384 ~~~y~~~~~~~~~-Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv~ 427 (427)
+++|+++..++.. |+++..... ..+.||||+.|+|+++++
T Consensus 338 ~~~y~~~~~~~~~~Cl~~~~~~~----~~~~~ilG~~~~~~~~~~ 378 (398)
T KOG1339|consen 338 PKNYLVEVSDGGGVCLAFFNGMD----SGPLWILGDVFQQNYLVV 378 (398)
T ss_pred ccceEEEECCCCCceeeEEecCC----CCceEEEchHHhCCEEEE
Confidence 9999999776544 997766542 115899999999999873
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2e-52 Score=418.42 Aligned_cols=292 Identities=20% Similarity=0.378 Sum_probs=235.8
Q ss_pred CCCCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCcccCCCCCCCCCcceecCCCcccCCc
Q 014294 74 NGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTT 151 (427)
Q Consensus 74 ~~~~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~--C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~ 151 (427)
...++.+.+|+++|+||||||+|.|++||||+++||+|..|.. |.. ++.|||++||||+.+.+..
T Consensus 112 ~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~-------~~~yd~s~SSTy~~~~~~~------ 178 (482)
T PTZ00165 112 DLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAP-------HRKFDPKKSSTYTKLKLGD------ 178 (482)
T ss_pred ecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccc-------cCCCCccccCCcEecCCCC------
Confidence 3456789999999999999999999999999999999999963 554 4799999999999843211
Q ss_pred CCCCCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecC
Q 014294 152 YNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFG 231 (427)
Q Consensus 152 ~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg 231 (427)
....+.++|++|+ ..|.+++|+|+|++. .++++.||+++.+++..+ ...++|||||||
T Consensus 179 -----------~~~~~~i~YGsGs-~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f--~~~~~DGILGLg 236 (482)
T PTZ00165 179 -----------ESAETYIQYGTGE-CVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPF--ADLPFDGLVGLG 236 (482)
T ss_pred -----------ccceEEEEeCCCc-EEEEEEEEEEEECCE--------EEccEEEEEEEecccccc--ccccccceeecC
Confidence 0125779999998 689999999999874 345899999998765321 345789999999
Q ss_pred CCC---------CcHHHHHHhcCCCC-Cceeeecccc-CCcceEEeCCcCCC------CceeecCCCCCCcceEEEEEEE
Q 014294 232 QAN---------SSLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP------KVKTTPMVPNMPHYNVILEEVE 294 (427)
Q Consensus 232 ~~~---------~s~~~~l~~~~~i~-~~Fs~~l~~~-~~~G~l~~Gg~d~~------~~~~~p~~~~~~~~~v~l~~i~ 294 (427)
++. .+++++|++||+++ ++||+||.+. +.+|+|+|||+|+. ++.|+|++ ...+|+|++++|+
T Consensus 237 ~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~ 315 (482)
T PTZ00165 237 FPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDIL 315 (482)
T ss_pred CCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEE
Confidence 875 36899999999997 9999999864 45799999999853 48999998 6789999999999
Q ss_pred ECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEe
Q 014294 295 VGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKF 374 (427)
Q Consensus 295 v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f 374 (427)
||++.+.... ....+|+||||+++++|.+++++|.+++++. .+|. ..+.+|+|+|+|
T Consensus 316 vgg~~~~~~~------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------------~~C~-----~~~~lP~itf~f 372 (482)
T PTZ00165 316 IDGKSLGFCD------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE------------EDCS-----NKDSLPRISFVL 372 (482)
T ss_pred ECCEEeeecC------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc------------cccc-----ccccCCceEEEE
Confidence 9998776432 2466999999999999999999998887532 3673 335689999999
Q ss_pred cCCc-----EEEECCCceEEEe----CCceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 375 KGSL-----SLTVYPHEYLFQI----REDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 375 ~gg~-----~~~l~~~~y~~~~----~~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
+|. +|.|+|++|+++. .++..|+ +|...+..... .+.||||++|||++|+
T Consensus 373 -~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~-g~~~ILGd~Flr~yy~ 432 (482)
T PTZ00165 373 -EDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPR-GPLFVLGNNFIRKYYS 432 (482)
T ss_pred -CCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCC-CceEEEchhhheeEEE
Confidence 543 8999999999974 2346896 88876643322 3689999999999996
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6.8e-51 Score=394.34 Aligned_cols=294 Identities=23% Similarity=0.390 Sum_probs=232.7
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCC
Q 014294 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYP 157 (427)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~ 157 (427)
+.+.+|+++|.||||+|++.|++||||+++||+|..|..|. ..|..++.|+|++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~~~--------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVKNG--------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceeeCC---------------
Confidence 45789999999999999999999999999999999886431 122334789999999998733
Q ss_pred CCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC--
Q 014294 158 SCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS-- 235 (427)
Q Consensus 158 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~-- 235 (427)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+... .....+||||||++..
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~ 125 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITF--IAAKFDGILGMAYPRISV 125 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcc--cceeeeEEEecCCccccc
Confidence 79999999998 799999999999875 344799999988765321 2346799999998654
Q ss_pred ----cHHHHHHhcCCCC-Cceeeecccc---CCcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEeeCC
Q 014294 236 ----SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLP 303 (427)
Q Consensus 236 ----s~~~~l~~~~~i~-~~Fs~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~ 303 (427)
+++++|++++.++ ++||+||.+. ..+|+|+||++|++ .+.|+|+. .+.+|.|++++|+||++....
T Consensus 126 ~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~~- 203 (325)
T cd05490 126 DGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTLC- 203 (325)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeeec-
Confidence 5788999999996 9999999863 24699999999975 48899987 567999999999999864321
Q ss_pred CCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEEC
Q 014294 304 TSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVY 383 (427)
Q Consensus 304 ~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~ 383 (427)
.....+||||||+++++|++++++|.+++.+. + .....+.++| +....+|+|+|+| +|+.|+|+
T Consensus 204 ------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~---~~~~~~~~~C-----~~~~~~P~i~f~f-gg~~~~l~ 267 (325)
T cd05490 204 ------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-P---LIQGEYMIDC-----EKIPTLPVISFSL-GGKVYPLT 267 (325)
T ss_pred ------CCCCEEEECCCCccccCCHHHHHHHHHHhCCc-c---ccCCCEEecc-----cccccCCCEEEEE-CCEEEEEC
Confidence 12457999999999999999999999988642 1 1111222455 4445789999999 89999999
Q ss_pred CCceEEEeCC--ceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 384 PHEYLFQIRE--DVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 384 ~~~y~~~~~~--~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
|++|+++... ...|+ +|...+.... +.+.||||++|||++|+
T Consensus 268 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ilGd~flr~~y~ 312 (325)
T cd05490 268 GEDYILKVSQRGTTICLSGFMGLDIPPP-AGPLWILGDVFIGRYYT 312 (325)
T ss_pred hHHeEEeccCCCCCEEeeEEEECCCCCC-CCceEEEChHhheeeEE
Confidence 9999997542 35797 6776543222 24589999999999997
No 5
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=7.6e-51 Score=392.80 Aligned_cols=288 Identities=24% Similarity=0.445 Sum_probs=235.8
Q ss_pred CceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCC
Q 014294 80 TGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYP 157 (427)
Q Consensus 80 ~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~ 157 (427)
+..|+++|.||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~-------~~~f~~~~SsT~~~~~--------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN-------HTKFNPSQSSTYSTNG--------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc-------cCCCCcccCCCceECC---------------
Confidence 468999999999999999999999999999999886 3544 3799999999998754
Q ss_pred CCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC----
Q 014294 158 SCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA---- 233 (427)
Q Consensus 158 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~---- 233 (427)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+....+... .....+||||||++
T Consensus 59 -------~~~~~~Yg~Gs-~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~ 120 (318)
T cd05477 59 -------ETFSLQYGSGS-LTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNF--VYAQFDGILGLAYPSISA 120 (318)
T ss_pred -------cEEEEEECCcE-EEEEEEeeEEEECCE--------EEcCEEEEEEEecccccc--cccceeeEeecCcccccc
Confidence 89999999998 699999999999875 345899999998654321 23457999999985
Q ss_pred --CCcHHHHHHhcCCCC-Cceeeecccc--CCcceEEeCCcCCCC----ceeecCCCCCCcceEEEEEEEECCEEeeCCC
Q 014294 234 --NSSLLSQLAAAGNVR-KEFAHCLDVV--KGGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGNPLDLPT 304 (427)
Q Consensus 234 --~~s~~~~l~~~~~i~-~~Fs~~l~~~--~~~G~l~~Gg~d~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~ 304 (427)
..+++++|+++|.|+ ++||+||.+. ..+|.|+||++|+++ +.|+|+. ...+|.|++++|+||++.+....
T Consensus 121 ~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~ 199 (318)
T cd05477 121 GGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWCS 199 (318)
T ss_pred cCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEecccC
Confidence 357999999999996 9999999874 246999999999664 8999997 56899999999999998875322
Q ss_pred CCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECC
Q 014294 305 SLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYP 384 (427)
Q Consensus 305 ~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 384 (427)
....+||||||+++++|++++++|++++.+.... ..+|.++|.....+|+|+|+| +|+++.||+
T Consensus 200 ------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~---------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~ 263 (318)
T cd05477 200 ------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ---------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPP 263 (318)
T ss_pred ------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc---------CCCEEEeCCccccCCcEEEEE-CCEEEEECH
Confidence 1356999999999999999999999988654321 134555555556789999999 889999999
Q ss_pred CceEEEeCCceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 385 HEYLFQIREDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 385 ~~y~~~~~~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
++|+.+. +..|+ +|.........+.+.||||+.|||++|+
T Consensus 264 ~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~ 304 (318)
T cd05477 264 SAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYS 304 (318)
T ss_pred HHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEE
Confidence 9999875 45786 8876543333344579999999999997
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.3e-51 Score=394.07 Aligned_cols=284 Identities=23% Similarity=0.403 Sum_probs=230.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCC
Q 014294 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (427)
Q Consensus 83 Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 160 (427)
|+++|+||||||+++|+|||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~-------~~y~~~~SsT~~~~~------------------ 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH-------NRFQPSESSTYVSNG------------------ 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc-------ceECCCCCcccccCC------------------
Confidence 899999999999999999999999999999886 46543 689999999998754
Q ss_pred CCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC-----
Q 014294 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS----- 235 (427)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~----- 235 (427)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+..+.+... .....+||||||++..
T Consensus 56 ----~~~~i~Yg~g~-~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 56 ----EAFSIQYGTGS-LTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTF--QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ----cEEEEEeCCcE-EEEEeeecEEEECCE--------EEcCEEEEEeeccCcccc--cccccceEeccCchhhccCCC
Confidence 89999999998 799999999999864 344899999887655321 2346799999998654
Q ss_pred -cHHHHHHhcCCCC-Cceeeecccc---CCcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEeeCCCCC
Q 014294 236 -SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSL 306 (427)
Q Consensus 236 -s~~~~l~~~~~i~-~~Fs~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~ 306 (427)
+++++|++|++++ ++||+||.+. ..+|+|+||++|++ .+.|+|+. +..+|.|++++|+||++.+..+
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~--- 196 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS--- 196 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC---
Confidence 4689999999997 8999999863 24799999999976 48999997 6789999999999999876432
Q ss_pred cccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECCCc
Q 014294 307 LGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHE 386 (427)
Q Consensus 307 ~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 386 (427)
....+||||||+++++|++++++|.+.+.+.. .. .+|.++|+..+.+|+|+|+| +|+.++|+|++
T Consensus 197 ----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-----~~-----~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~ 261 (316)
T cd05486 197 ----DGCQAIVDTGTSLITGPSGDIKQLQNYIGATA-----TD-----GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQA 261 (316)
T ss_pred ----CCCEEEECCCcchhhcCHHHHHHHHHHhCCcc-----cC-----CcEEEeccccccCCCEEEEE-CCEEEEeCHHH
Confidence 23569999999999999999999988775431 11 22334445445799999999 89999999999
Q ss_pred eEEEeC--CceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 387 YLFQIR--EDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 387 y~~~~~--~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
|++... .+..|+ +|........ ..+.||||++|||++|+
T Consensus 262 y~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ILGd~flr~~y~ 303 (316)
T cd05486 262 YTLEDQSDGGGYCSSGFQGLDIPPP-AGPLWILGDVFIRQYYS 303 (316)
T ss_pred eEEecccCCCCEEeeEEEECCCCCC-CCCeEEEchHHhcceEE
Confidence 998752 346897 7776543222 23579999999999996
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=7.9e-51 Score=392.41 Aligned_cols=285 Identities=24% Similarity=0.415 Sum_probs=235.4
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCC
Q 014294 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (427)
Q Consensus 77 ~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~--C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 154 (427)
++.+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~-------~~~f~~~~Sst~~~~~------------ 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSN-------HNRFNPRQSSTYQSTG------------ 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccc-------cCcCCCCCCcceeeCC------------
Confidence 4568999999999999999999999999999999998864 543 4799999999999864
Q ss_pred CCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC
Q 014294 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN 234 (427)
Q Consensus 155 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (427)
+.+.+.|++|+ +.|.+++|+|+|++. .++++.|||+....+.+. ...+.+||||||++.
T Consensus 66 ----------~~~~~~yg~gs-~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~ 124 (317)
T cd05478 66 ----------QPLSIQYGTGS-MTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFF--YYAPFDGILGLAYPS 124 (317)
T ss_pred ----------cEEEEEECCce-EEEEEeeeEEEECCE--------EECCEEEEEEEecCcccc--ccccccceeeeccch
Confidence 78999999999 799999999999875 244799999987766542 234579999999864
Q ss_pred C------cHHHHHHhcCCCC-CceeeeccccC-CcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEeeC
Q 014294 235 S------SLLSQLAAAGNVR-KEFAHCLDVVK-GGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDL 302 (427)
Q Consensus 235 ~------s~~~~l~~~~~i~-~~Fs~~l~~~~-~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 302 (427)
. +++++|+++|+|+ ++||+||.+.. .+|.|+||++|++ .++|+|+. .+.+|.|.+++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVAC 203 (317)
T ss_pred hcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEcc
Confidence 3 5899999999997 99999998753 4689999999865 48999997 678999999999999998753
Q ss_pred CCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEE
Q 014294 303 PTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTV 382 (427)
Q Consensus 303 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l 382 (427)
. ....+||||||+++++|++++++|.+++.+... . ..+|.++|.....+|.|+|+| +|+.|+|
T Consensus 204 ~-------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~----~-----~~~~~~~C~~~~~~P~~~f~f-~g~~~~i 266 (317)
T cd05478 204 S-------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN----Q-----NGEMVVNCSSISSMPDVVFTI-NGVQYPL 266 (317)
T ss_pred C-------CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc----c-----CCcEEeCCcCcccCCcEEEEE-CCEEEEE
Confidence 2 235799999999999999999999998865421 1 123444445445789999999 8999999
Q ss_pred CCCceEEEeCCceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 383 YPHEYLFQIREDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 383 ~~~~y~~~~~~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
||++|+.+. +..|+ +|...+. .+.||||+.|||++|+
T Consensus 267 ~~~~y~~~~--~~~C~~~~~~~~~-----~~~~IlG~~fl~~~y~ 304 (317)
T cd05478 267 PPSAYILQD--QGSCTSGFQSMGL-----GELWILGDVFIRQYYS 304 (317)
T ss_pred CHHHheecC--CCEEeEEEEeCCC-----CCeEEechHHhcceEE
Confidence 999999875 45897 6766542 3579999999999997
No 8
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=9.2e-50 Score=382.07 Aligned_cols=274 Identities=31% Similarity=0.570 Sum_probs=222.8
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCC
Q 014294 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (427)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 161 (427)
+|+++|.||||||++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999987654
Q ss_pred CCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHH
Q 014294 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQL 241 (427)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 241 (427)
|.|.++|++|+.++|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||+...+++.|+
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHHh
Confidence 4789999999988999999999998641 34589999999876644 25799999999999999998
Q ss_pred HhcCCCCCceeeecccc--CCcceEEeCCcCC--CCceeecCCCC---CCcceEEEEEEEECCEEeeCCCCCcccCCCCc
Q 014294 242 AAAGNVRKEFAHCLDVV--KGGGIFAIGDVVS--PKVKTTPMVPN---MPHYNVILEEVEVGGNPLDLPTSLLGTGDERG 314 (427)
Q Consensus 242 ~~~~~i~~~Fs~~l~~~--~~~G~l~~Gg~d~--~~~~~~p~~~~---~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 314 (427)
..+ .+++||+||.+. ..+|+|+||++|+ +++.|+|++.+ ..+|.|+|++|+||++.+..+... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 875 458999999864 4579999999997 57999999854 368999999999999988754321 12467
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCC-ceeeecCCCCccCceEEEEecCCcEEEECCCceEEEe-C
Q 014294 315 TIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQF-SCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQI-R 392 (427)
Q Consensus 315 ~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~-~ 392 (427)
+||||||+++++|+++|++|.+++.+.............. .||..++.....+|+|+|+|++|++++|++++|++.. .
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~ 253 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD 253 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC
Confidence 9999999999999999999999998765322111111223 5988766555679999999965899999999999943 3
Q ss_pred CceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 393 EDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 393 ~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
.+..|+++.... .+.+.||||+.|||++||
T Consensus 254 ~~~~C~~~~~~~----~~~~~~ilG~~fl~~~~v 283 (299)
T cd05472 254 SSQVCLAFAGTS----DDGGLSIIGNVQQQTFRV 283 (299)
T ss_pred CCCEEEEEeCCC----CCCCCEEEchHHccceEE
Confidence 467899887653 123579999999999996
No 9
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=7e-50 Score=387.01 Aligned_cols=287 Identities=26% Similarity=0.451 Sum_probs=230.0
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCC
Q 014294 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (427)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 160 (427)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+. ++.|||++|+|++.+.|++..|... ..|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~~-----~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCYC-----LSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCcccccc-----CcC-
Confidence 68999999999999999999999999999999999997653 3789999999999999999999531 234
Q ss_pred CCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC----c
Q 014294 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS----S 236 (427)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~----s 236 (427)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+..+.+.| .....+||||||+... +
T Consensus 71 ~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLF---LTQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcc---cccccceEEEccCCcccccCc
Confidence 34679999999999888999999999998754321 00112357899999887665 3456899999999764 2
Q ss_pred HHHHHHhcCCCC---CceeeeccccCCcceEEeCCcCCC--------------CceeecCCCCCCcceEEEEEEEECCEE
Q 014294 237 LLSQLAAAGNVR---KEFAHCLDVVKGGGIFAIGDVVSP--------------KVKTTPMVPNMPHYNVILEEVEVGGNP 299 (427)
Q Consensus 237 ~~~~l~~~~~i~---~~Fs~~l~~~~~~G~l~~Gg~d~~--------------~~~~~p~~~~~~~~~v~l~~i~v~~~~ 299 (427)
...+|.+++.+. ++||+||.+ .+|.|+||++|+. .+.|+|+. .+.+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccc
Confidence 333455555542 899999985 4799999999853 47899998 458999999999999886
Q ss_pred eeCCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcE
Q 014294 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLS 379 (427)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 379 (427)
.... ......+||||||++++||++++++|.+++ |+|+|+|++|++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~~ 269 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNLK 269 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCcE
Confidence 1100 123567999999999999999999987765 889999965899
Q ss_pred EEECCCceEEEeCCceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 380 LTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 380 ~~l~~~~y~~~~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
++++|++|+++..+..+|+++... .+.||||++|||++|+
T Consensus 270 ~~i~p~~y~~~~~~~~c~~~~~~~-------~~~~ILG~~flr~~y~ 309 (326)
T cd06096 270 IDWKPSSYLYKKESFWCKGGEKSV-------SNKPILGASFFKNKQI 309 (326)
T ss_pred EEECHHHhccccCCceEEEEEecC-------CCceEEChHHhcCcEE
Confidence 999999999987655566666543 2479999999999997
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.2e-49 Score=383.96 Aligned_cols=280 Identities=25% Similarity=0.454 Sum_probs=228.3
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCC
Q 014294 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS---RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYN 153 (427)
Q Consensus 77 ~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~---~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 153 (427)
++.+..|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~~~~----------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH-------SKYKSSKSSTYKKNG----------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc-------CcCCcccCCCcccCC-----------
Confidence 467899999999999999999999999999999999885 56643 689999999998754
Q ss_pred CCCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC
Q 014294 154 NRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA 233 (427)
Q Consensus 154 ~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~ 233 (427)
..+.+.|++|+ +.|.+++|+|+|++. .++++.||+++++.+... .....+||||||+.
T Consensus 67 -----------~~~~i~Yg~G~-~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~--~~~~~dGilGLg~~ 124 (317)
T cd06098 67 -----------TSASIQYGTGS-ISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTF--LLAKFDGILGLGFQ 124 (317)
T ss_pred -----------CEEEEEcCCce-EEEEEEeeEEEECCE--------EECCEEEEEEEecCCccc--cccccceecccccc
Confidence 68899999998 699999999999874 345899999987654311 23468999999986
Q ss_pred CC------cHHHHHHhcCCCC-Cceeeecccc---CCcceEEeCCcCCCC----ceeecCCCCCCcceEEEEEEEECCEE
Q 014294 234 NS------SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGNP 299 (427)
Q Consensus 234 ~~------s~~~~l~~~~~i~-~~Fs~~l~~~---~~~G~l~~Gg~d~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~ 299 (427)
.. +++.+|+++|.++ ++||+||.+. ..+|.|+||++|+++ ++|+|+. ...+|.|++++|+||++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEE
Confidence 54 4778999999997 8999999864 247999999999764 7899997 567999999999999988
Q ss_pred eeCCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcE
Q 014294 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLS 379 (427)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 379 (427)
+..... ...+||||||+++++|++++++|. +..+|+. ...+|+|+|+| +|+.
T Consensus 204 ~~~~~~------~~~aivDTGTs~~~lP~~~~~~i~----------------~~~~C~~-----~~~~P~i~f~f-~g~~ 255 (317)
T cd06098 204 TGFCAG------GCAAIADSGTSLLAGPTTIVTQIN----------------SAVDCNS-----LSSMPNVSFTI-GGKT 255 (317)
T ss_pred eeecCC------CcEEEEecCCcceeCCHHHHHhhh----------------ccCCccc-----cccCCcEEEEE-CCEE
Confidence 654322 356999999999999998776653 1257842 24689999999 8899
Q ss_pred EEECCCceEEEeCC--ceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 380 LTVYPHEYLFQIRE--DVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 380 ~~l~~~~y~~~~~~--~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
|+|+|++|+++..+ ...|+ +|...+.... ..+.||||++|||++|+
T Consensus 256 ~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~IlGd~Flr~~y~ 304 (317)
T cd06098 256 FELTPEQYILKVGEGAAAQCISGFTALDVPPP-RGPLWILGDVFMGAYHT 304 (317)
T ss_pred EEEChHHeEEeecCCCCCEEeceEEECCCCCC-CCCeEEechHHhcccEE
Confidence 99999999997643 35897 7776543222 23579999999999996
No 11
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.8e-49 Score=384.23 Aligned_cols=292 Identities=22% Similarity=0.399 Sum_probs=234.9
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCC
Q 014294 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRY 156 (427)
Q Consensus 77 ~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 156 (427)
++.+..|+++|+||||+|+++|++||||+++||++..|..|.. .|..++.|+|++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~SsT~~~~~-------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT---ACVTHNLYDASDSSTYKENG-------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch---hhcccCcCCCCCCeeeeECC--------------
Confidence 4568999999999999999999999999999999988865321 13345799999999999754
Q ss_pred CCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccC-CCCCCCCCCcceeeecCCCCC
Q 014294 157 PSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSG-DLGSSTDAAVDGILGFGQANS 235 (427)
Q Consensus 157 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~-~~~~~~~~~~~GIlGLg~~~~ 235 (427)
|.|.+.|++|+ +.|.+++|+|++++.. + ++.||++.+... .+ .....+||||||++..
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~---~~~~~dGilGLg~~~~ 124 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPF---MLAKFDGVLGMGYPKQ 124 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCcc---ceeecceEEecCChhh
Confidence 89999999998 7999999999998642 1 367999987642 22 2245799999998643
Q ss_pred ------cHHHHHHhcCCCC-Cceeeecccc---CCcceEEeCCcCCCC----ceeecCCCCCCcceEEEEEEEECCEEee
Q 014294 236 ------SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGNPLD 301 (427)
Q Consensus 236 ------s~~~~l~~~~~i~-~~Fs~~l~~~---~~~G~l~~Gg~d~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~ 301 (427)
+++++|++||.|+ ++||+||.+. ..+|.|+||++|+++ ++|+|+. ...+|.|++++++|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 5789999999997 9999999864 347999999999764 7899987 57799999999999998765
Q ss_pred CCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEE
Q 014294 302 LPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLT 381 (427)
Q Consensus 302 ~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~ 381 (427)
.+ ....++|||||+++++|.+++++|++++.+... . .+|.++|+....+|+|+|+| +|..++
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~-----~~y~~~C~~~~~~P~i~f~f-gg~~~~ 265 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAKER-----L-----GDYVVKCNEVPTLPDISFHL-GGKEYT 265 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCccc-----C-----CCEEEeccccCCCCCEEEEE-CCEEEE
Confidence 32 135699999999999999999999998864422 1 22444445556789999999 899999
Q ss_pred ECCCceEEEeCC--ceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 382 VYPHEYLFQIRE--DVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 382 l~~~~y~~~~~~--~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
|++++|+++..+ +..|+ +|...+..... .+.||||+.|||++|+
T Consensus 266 v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~-~~~~ilG~~flr~~y~ 312 (326)
T cd05487 266 LSSSDYVLQDSDFSDKLCTVAFHAMDIPPPT-GPLWVLGATFIRKFYT 312 (326)
T ss_pred eCHHHhEEeccCCCCCEEEEEEEeCCCCCCC-CCeEEEehHHhhccEE
Confidence 999999998643 45786 78776543222 3579999999999997
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.7e-49 Score=384.55 Aligned_cols=295 Identities=22% Similarity=0.361 Sum_probs=236.3
Q ss_pred CCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCC
Q 014294 76 HPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNR 155 (427)
Q Consensus 76 ~~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 155 (427)
.++.+..|+++|.||||+|++.|++||||+++||+|..|..|.. .|..++.|+|++|+|++...
T Consensus 5 ~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 5 SNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI---ACLLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred eeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc---cccCCCeECCcCCCCeEECC-------------
Confidence 35678999999999999999999999999999999998864321 12234789999999998754
Q ss_pred CCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC
Q 014294 156 YPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS 235 (427)
Q Consensus 156 ~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~ 235 (427)
|.|.+.|++|+ +.|.+++|+++|++.. ++++.|||+..+.+... .....+||||||+...
T Consensus 69 ---------~~~~i~Y~~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~ 128 (329)
T cd05485 69 ---------TEFAIQYGSGS-LSGFLSTDTVSVGGVS--------VKGQTFAEAINEPGLTF--VAAKFDGILGMGYSSI 128 (329)
T ss_pred ---------eEEEEEECCce-EEEEEecCcEEECCEE--------ECCEEEEEEEecCCccc--cccccceEEEcCCccc
Confidence 89999999998 7999999999998752 34799999987654321 2346799999999765
Q ss_pred c------HHHHHHhcCCCC-Cceeeecccc---CCcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEee
Q 014294 236 S------LLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLD 301 (427)
Q Consensus 236 s------~~~~l~~~~~i~-~~Fs~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~ 301 (427)
+ ++.+|++|++|+ ++||+||.+. ..+|+|+||++|++ .++|+|+. ...+|.|++++++|+++.+.
T Consensus 129 s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~ 207 (329)
T cd05485 129 SVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC 207 (329)
T ss_pred cccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec
Confidence 3 678999999996 8999999864 24699999999965 47999997 57899999999999998753
Q ss_pred CCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEE
Q 014294 302 LPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLT 381 (427)
Q Consensus 302 ~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~ 381 (427)
. ....+||||||+++++|++++++|.+++.+... . ..||.++|.....+|+|+|+| +|++++
T Consensus 208 ~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~-----~~~~~~~C~~~~~~p~i~f~f-gg~~~~ 269 (329)
T cd05485 208 S--------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI----I-----GGEYMVNCSAIPSLPDITFVL-GGKSFS 269 (329)
T ss_pred C--------CCcEEEEccCCcceeCCHHHHHHHHHHhCCccc----c-----CCcEEEeccccccCCcEEEEE-CCEEeE
Confidence 1 235699999999999999999999888764311 1 124555555556789999999 899999
Q ss_pred ECCCceEEEeCC--ceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 382 VYPHEYLFQIRE--DVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 382 l~~~~y~~~~~~--~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
|+|++|+++... ...|+ ++...+.... ..+.||||+.|||++|+
T Consensus 270 i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~IlG~~fl~~~y~ 316 (329)
T cd05485 270 LTGKDYVLKVTQMGQTICLSGFMGIDIPPP-AGPLWILGDVFIGKYYT 316 (329)
T ss_pred EChHHeEEEecCCCCCEEeeeEEECcCCCC-CCCeEEEchHHhccceE
Confidence 999999998652 45897 6776543222 23579999999999996
No 13
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.4e-49 Score=385.14 Aligned_cols=312 Identities=21% Similarity=0.368 Sum_probs=244.1
Q ss_pred eCCCCce-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCC---------CCC
Q 014294 89 LGTPTDE-YYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNR---------YPS 158 (427)
Q Consensus 89 vGtP~q~-~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~---------~~~ 158 (427)
.|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|+...... ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 999999999999999863 45889999999999998654321 235
Q ss_pred CCCCCcceeeEE-cCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcH
Q 014294 159 CSPGVRCEYVVT-YGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSL 237 (427)
Q Consensus 159 c~~~~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~ 237 (427)
|. ++.|.|... |++|+.+.|.+++|+|+|+..++.......++++.|||+.+..... ....+|||||||++++|+
T Consensus 63 c~-~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~---~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CG-NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG---LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CC-CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC---CccccccccccCCCccch
Confidence 63 346988765 7799889999999999998654432111246689999998853211 123489999999999999
Q ss_pred HHHHHhcCCCCCceeeecccc-CCcceEEeCCcCC----------CCceeecCCCC---CCcceEEEEEEEECCEEeeCC
Q 014294 238 LSQLAAAGNVRKEFAHCLDVV-KGGGIFAIGDVVS----------PKVKTTPMVPN---MPHYNVILEEVEVGGNPLDLP 303 (427)
Q Consensus 238 ~~~l~~~~~i~~~Fs~~l~~~-~~~G~l~~Gg~d~----------~~~~~~p~~~~---~~~~~v~l~~i~v~~~~~~~~ 303 (427)
+.||..++..+++||+||.+. +.+|.|+||+.+. ..++|+||+.+ ..+|.|+|++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999998876668999999864 4579999999874 45899999865 369999999999999999876
Q ss_pred CCCcc--cCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCccccc--CCCCceeeecC----CCCccCceEEEEec
Q 014294 304 TSLLG--TGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTV--EEQFSCFQFSK----NVDDAFPTVTFKFK 375 (427)
Q Consensus 304 ~~~~~--~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~--~~~~~C~~~~~----~~~~~~P~i~f~f~ 375 (427)
+..+. ..+.+++||||||++++||+++|++|.+++.+.+........ .....||.... +....+|+|+|+|+
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 65543 234578999999999999999999999999877643221111 11258997542 22357999999997
Q ss_pred C-CcEEEECCCceEEEeCCceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 376 G-SLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 376 g-g~~~~l~~~~y~~~~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
| |++|+|+|++|+++..++.+|++|...+.. ..+.||||+.|||++||
T Consensus 299 g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~---~~~~~IlG~~~~~~~~v 347 (362)
T cd05489 299 GGGVNWTIFGANSMVQVKGGVACLAFVDGGSE---PRPAVVIGGHQMEDNLL 347 (362)
T ss_pred CCCeEEEEcCCceEEEcCCCcEEEEEeeCCCC---CCceEEEeeheecceEE
Confidence 6 799999999999998777899999876531 13579999999999997
No 14
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.8e-49 Score=382.00 Aligned_cols=288 Identities=25% Similarity=0.440 Sum_probs=232.9
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCC
Q 014294 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (427)
Q Consensus 77 ~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 154 (427)
++.+..|+++|.||||+|++.|++||||+++||+|..|. .|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~-------~~y~~~~Sst~~~~~------------ 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH-------SKYDSSASSTYKANG------------ 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc-------ceECCCCCcceeeCC------------
Confidence 456789999999999999999999999999999999996 46543 689999999998743
Q ss_pred CCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC
Q 014294 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN 234 (427)
Q Consensus 155 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (427)
|.+.+.|++|+ +.|.+++|+++|++. .++++.|||+....+... .....+||||||++.
T Consensus 66 ----------~~~~~~y~~g~-~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~--~~~~~dGilGLg~~~ 124 (320)
T cd05488 66 ----------TEFKIQYGSGS-LEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAF--AFGKFDGILGLAYDT 124 (320)
T ss_pred ----------CEEEEEECCce-EEEEEEEeEEEECCE--------EECCEEEEEEecCCCcce--eeeeeceEEecCCcc
Confidence 79999999998 799999999999774 344799999987655321 234579999999976
Q ss_pred C------cHHHHHHhcCCCC-Cceeeecccc-CCcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEeeC
Q 014294 235 S------SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDL 302 (427)
Q Consensus 235 ~------s~~~~l~~~~~i~-~~Fs~~l~~~-~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 302 (427)
. +.+.+|+++|.|. ++||+||.+. ..+|.|+||++|+. +++|+|++ ...+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 3567899999996 8999999975 45799999999975 48999998 567999999999999987754
Q ss_pred CCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEE
Q 014294 303 PTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTV 382 (427)
Q Consensus 303 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l 382 (427)
+ ...++|||||+++++|++++++|.+++.+... . ..+|.++|.....+|+|+|+| +|+++.|
T Consensus 204 ~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~----~-----~~~~~~~C~~~~~~P~i~f~f-~g~~~~i 265 (320)
T cd05488 204 E--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS----W-----NGQYTVDCSKVDSLPDLTFNF-DGYNFTL 265 (320)
T ss_pred C--------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc----c-----CCcEEeeccccccCCCEEEEE-CCEEEEE
Confidence 3 35699999999999999999999888754321 1 233444555555799999999 7899999
Q ss_pred CCCceEEEeCCceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 383 YPHEYLFQIREDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 383 ~~~~y~~~~~~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
||++|+++. +..|+ .+......... .+.||||+.|||++|+
T Consensus 266 ~~~~y~~~~--~g~C~~~~~~~~~~~~~-~~~~ilG~~fl~~~y~ 307 (320)
T cd05488 266 GPFDYTLEV--SGSCISAFTGMDFPEPV-GPLAIVGDAFLRKYYS 307 (320)
T ss_pred CHHHheecC--CCeEEEEEEECcCCCCC-CCeEEEchHHhhheEE
Confidence 999999864 34798 56554332112 2479999999999997
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.3e-48 Score=382.43 Aligned_cols=285 Identities=22% Similarity=0.352 Sum_probs=225.0
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCC
Q 014294 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (427)
Q Consensus 77 ~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~--C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 154 (427)
+..+.+|+++|+||||||++.|++||||+++||+|..|.. |.. ++.|||++|+|++...
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~-------~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCET-------KNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccC-------CCccCCccCcceEECC------------
Confidence 5678899999999999999999999999999999999964 543 3789999999998854
Q ss_pred CCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC
Q 014294 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN 234 (427)
Q Consensus 155 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (427)
+.+.+.|++|+ +.|.+++|+|+|++.. ++ ..|+++.+..+.-........|||||||++.
T Consensus 195 ----------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~ 254 (453)
T PTZ00147 195 ----------TKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKD 254 (453)
T ss_pred ----------CEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccceecccCCc
Confidence 79999999998 7999999999998742 23 5688887654310000234679999999975
Q ss_pred C------cHHHHHHhcCCCC-Cceeeecccc-CCcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEeeC
Q 014294 235 S------SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDL 302 (427)
Q Consensus 235 ~------s~~~~l~~~~~i~-~~Fs~~l~~~-~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 302 (427)
. +++.+|++|+.|+ ++||+||.+. ..+|.|+|||+|++ .+.|+|+. .+.+|.|.++ +.+++...
T Consensus 255 ~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~-- 330 (453)
T PTZ00147 255 LSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS-- 330 (453)
T ss_pred cccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec--
Confidence 4 5788999999997 8999999864 45799999999976 48899997 6779999998 57776432
Q ss_pred CCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEE
Q 014294 303 PTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTV 382 (427)
Q Consensus 303 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l 382 (427)
....+||||||+++++|+++++++.+++.+... . ....+..+|+ . ..+|+|+|+| +|..++|
T Consensus 331 --------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~--~-~~~~y~~~C~-----~-~~lP~~~f~f-~g~~~~L 392 (453)
T PTZ00147 331 --------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV--P-FLPLYVTTCN-----N-TKLPTLEFRS-PNKVYTL 392 (453)
T ss_pred --------CceeEEECCCCchhcCCHHHHHHHHHHhCCeec--C-CCCeEEEeCC-----C-CCCCeEEEEE-CCEEEEE
Confidence 145699999999999999999999998854321 0 1111223563 2 3689999999 7899999
Q ss_pred CCCceEEEeC--CceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 383 YPHEYLFQIR--EDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 383 ~~~~y~~~~~--~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
+|++|+.+.. ....|+ +|...+. ..+.||||++|||++|+
T Consensus 393 ~p~~yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~FLr~~Yt 435 (453)
T PTZ00147 393 EPEYYLQPIEDIGSALCMLNIIPIDL----EKNTFILGDPFMRKYFT 435 (453)
T ss_pred CHHHheeccccCCCcEEEEEEEECCC----CCCCEEECHHHhccEEE
Confidence 9999998643 235797 7876542 23479999999999996
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-47 Score=380.38 Aligned_cols=285 Identities=22% Similarity=0.380 Sum_probs=223.5
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCC
Q 014294 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (427)
Q Consensus 77 ~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 154 (427)
++.+.+|+++|.||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~-------~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK-------NLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC-------CCccCccCcccccCC------------
Confidence 456789999999999999999999999999999999996 46543 689999999998854
Q ss_pred CCCCCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC
Q 014294 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN 234 (427)
Q Consensus 155 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~ 234 (427)
+.+.+.|++|+ +.|.+++|+|+|++.. + ...|+++.+....-........|||||||++.
T Consensus 194 ----------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~--------~-~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 194 ----------TKVDITYGSGT-VKGFFSKDLVTLGHLS--------M-PYKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred ----------cEEEEEECCce-EEEEEEEEEEEECCEE--------E-ccEEEEEEeccccccceecccccceecccCCc
Confidence 79999999998 7999999999998752 2 25788877653210000234679999999875
Q ss_pred C------cHHHHHHhcCCCC-Cceeeecccc-CCcceEEeCCcCCCC----ceeecCCCCCCcceEEEEEEEECCEEeeC
Q 014294 235 S------SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGNPLDL 302 (427)
Q Consensus 235 ~------s~~~~l~~~~~i~-~~Fs~~l~~~-~~~G~l~~Gg~d~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 302 (427)
. +++.+|++|+.|+ ++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|.|+++ +.+|.....
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~~- 330 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTMQ- 330 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceecc-
Confidence 4 5789999999997 8999999864 457999999999764 8899997 6679999998 677654321
Q ss_pred CCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEE
Q 014294 303 PTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTV 382 (427)
Q Consensus 303 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l 382 (427)
...+|+||||+++++|+++++++.+++.+... . ....+..+| +. ..+|+|+|+| +|.+++|
T Consensus 331 ---------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~--~-~~~~y~~~C-----~~-~~lP~i~F~~-~g~~~~L 391 (450)
T PTZ00013 331 ---------KANVIVDSGTTTITAPSEFLNKFFANLNVIKV--P-FLPFYVTTC-----DN-KEMPTLEFKS-ANNTYTL 391 (450)
T ss_pred ---------ccceEECCCCccccCCHHHHHHHHHHhCCeec--C-CCCeEEeec-----CC-CCCCeEEEEE-CCEEEEE
Confidence 35699999999999999999999988754321 0 111122455 33 4689999999 7899999
Q ss_pred CCCceEEEeC--CceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 383 YPHEYLFQIR--EDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 383 ~~~~y~~~~~--~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
+|++|+.+.. ++..|+ ++.+.+. +.+.||||++|||++|+
T Consensus 392 ~p~~Yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~FLr~~Y~ 434 (450)
T PTZ00013 392 EPEYYMNPLLDVDDTLCMITMLPVDI----DDNTFILGDPFMRKYFT 434 (450)
T ss_pred CHHHheehhccCCCCeeEEEEEECCC----CCCCEEECHHHhccEEE
Confidence 9999997532 345897 7766432 23579999999999996
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6.7e-47 Score=371.66 Aligned_cols=297 Identities=22% Similarity=0.333 Sum_probs=223.6
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCC
Q 014294 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (427)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 160 (427)
..|+++|.||||+|++.|+|||||+++||+|..|..| ++.|||++|+|++...
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~~------------------ 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDLG------------------ 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccCC------------------
Confidence 4699999999999999999999999999999877332 2689999999999865
Q ss_pred CCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC-----
Q 014294 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS----- 235 (427)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~----- 235 (427)
|.|.+.|++|+ +.|.+++|+|+|++.. + ....+.|++..+..+.+. .....|||||||++.+
T Consensus 55 ----~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~-~-----~~~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~l~~~~~ 121 (364)
T cd05473 55 ----KGVTVPYTQGS-WEGELGTDLVSIPKGP-N-----VTFRANIAAITESENFFL--NGSNWEGILGLAYAELARPDS 121 (364)
T ss_pred ----ceEEEEECcce-EEEEEEEEEEEECCCC-c-----cceEEeeEEEecccccee--cccccceeeeecccccccCCC
Confidence 79999999998 6999999999997531 1 111234566655443331 1235799999998643
Q ss_pred ---cHHHHHHhcCCCCCceeeecccc----------CCcceEEeCCcCCCC----ceeecCCCCCCcceEEEEEEEECCE
Q 014294 236 ---SLLSQLAAAGNVRKEFAHCLDVV----------KGGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGN 298 (427)
Q Consensus 236 ---s~~~~l~~~~~i~~~Fs~~l~~~----------~~~G~l~~Gg~d~~~----~~~~p~~~~~~~~~v~l~~i~v~~~ 298 (427)
+++++|.+|+.++++||++|... ..+|.|+||++|+.+ +.|+|+. ...+|.|.+++|+|+++
T Consensus 122 ~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~ 200 (364)
T cd05473 122 SVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQ 200 (364)
T ss_pred CCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCE
Confidence 57889999998878999987421 246999999999764 8999997 56799999999999999
Q ss_pred EeeCCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCccccc---CCCCceeeecCCCCccCceEEEEec
Q 014294 299 PLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTV---EEQFSCFQFSKNVDDAFPTVTFKFK 375 (427)
Q Consensus 299 ~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~P~i~f~f~ 375 (427)
.+..+...+. ...+||||||+++++|++++++|.+++.++......... ....+|+.........+|+|+|+|+
T Consensus 201 ~~~~~~~~~~---~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 277 (364)
T cd05473 201 SLNLDCKEYN---YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLR 277 (364)
T ss_pred eccccccccc---CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEc
Confidence 8875443221 246999999999999999999999999876531111111 1124787543222236999999996
Q ss_pred CC-----cEEEECCCceEEEeC---CceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 376 GS-----LSLTVYPHEYLFQIR---EDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 376 gg-----~~~~l~~~~y~~~~~---~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
++ .+++|+|++|+.... .+..|+++.... ..+.||||+.|||++||
T Consensus 278 g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-----~~~~~ILG~~flr~~yv 331 (364)
T cd05473 278 DENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ-----STNGTVIGAVIMEGFYV 331 (364)
T ss_pred cCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeec-----CCCceEEeeeeEcceEE
Confidence 42 478999999998643 245797543321 13469999999999997
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.6e-46 Score=353.09 Aligned_cols=249 Identities=33% Similarity=0.674 Sum_probs=204.1
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCC-CCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCC
Q 014294 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCA-GCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSC 159 (427)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~-~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c 159 (427)
++|+++|.||||||++.|++||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 57999999999999999999999999999983 56554
Q ss_pred CCCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHH
Q 014294 160 SPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLS 239 (427)
Q Consensus 160 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 239 (427)
.|.|.++|+|++.+.|.+++|+|+|+..++. ..++++.|||+.+..+.+.. ...+.+||||||+...++++
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 1789999998877999999999999764333 23458999999876554321 34568999999999999999
Q ss_pred HHHhcCCCCCceeeeccccCCcceEEeCCcCC--CCceeecCCCC--CCcceEEEEEEEECCEEeeCCCCCcccCCCCcE
Q 014294 240 QLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVS--PKVKTTPMVPN--MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGT 315 (427)
Q Consensus 240 ~l~~~~~i~~~Fs~~l~~~~~~G~l~~Gg~d~--~~~~~~p~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 315 (427)
||.+++.++++||+||.+ ..+|.|+||+... ..+.|+|+..+ ..+|.|++.+|+||++... .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999998899999987 5579999996432 35899999854 4799999999999998532 124679
Q ss_pred EEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCC---cEEEECCCceEEEeC
Q 014294 316 IIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGS---LSLTVYPHEYLFQIR 392 (427)
Q Consensus 316 iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg---~~~~l~~~~y~~~~~ 392 (427)
||||||+++++|+++| +|+|+|+|+++ ++++|||++|++...
T Consensus 181 ivDTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~ 225 (273)
T cd05475 181 VFDSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE 225 (273)
T ss_pred EEECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC
Confidence 9999999999999865 58899999543 799999999999866
Q ss_pred CceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 393 EDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 393 ~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
++..|+++...... ...+.||||+.|||++|+
T Consensus 226 ~~~~Cl~~~~~~~~--~~~~~~ilG~~~l~~~~~ 257 (273)
T cd05475 226 KGNVCLGILNGSEI--GLGNTNIIGDISMQGLMV 257 (273)
T ss_pred CCCEEEEEecCCCc--CCCceEEECceEEEeeEE
Confidence 67789988765321 113579999999999997
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.8e-45 Score=343.20 Aligned_cols=238 Identities=38% Similarity=0.704 Sum_probs=203.9
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCC
Q 014294 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (427)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 161 (427)
+|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 599999999999999999999999999976
Q ss_pred CCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHH
Q 014294 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQL 241 (427)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 241 (427)
|.|.+.|+||+.+.|.+++|+|+|++.. ..++++.|||+.+..+ + .....+||||||+...|++.||
T Consensus 31 ---~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~---~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ---CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G---SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ---CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C---ccCCCCEEEECCCCcccHHHHh
Confidence 3678999998889999999999998752 1345899999998876 3 3457899999999999999999
Q ss_pred HhcCCCCCceeeecccc---CCcceEEeCCcCC---CCceeecCCCC---CCcceEEEEEEEECCEEeeCCCCCcc--cC
Q 014294 242 AAAGNVRKEFAHCLDVV---KGGGIFAIGDVVS---PKVKTTPMVPN---MPHYNVILEEVEVGGNPLDLPTSLLG--TG 310 (427)
Q Consensus 242 ~~~~~i~~~Fs~~l~~~---~~~G~l~~Gg~d~---~~~~~~p~~~~---~~~~~v~l~~i~v~~~~~~~~~~~~~--~~ 310 (427)
..++ ++||+||.+. ..+|+|+||++|+ +.+.|+|++.+ ..+|.|++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 7999999873 5689999999998 57999999865 57899999999999998875443222 13
Q ss_pred CCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECCCceEEE
Q 014294 311 DERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQ 390 (427)
Q Consensus 311 ~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~ 390 (427)
....+||||||+++++|++++ |+|+|+|.+|.++.+++++|+++
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 457799999999999999876 88999995589999999999998
Q ss_pred eCCceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 391 IREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 391 ~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
..++..|+++.... ..+.||||++|||++|+
T Consensus 219 ~~~~~~C~~~~~~~-----~~~~~ilG~~fl~~~~~ 249 (265)
T cd05476 219 VGEGVVCLAILSSS-----SGGVSILGNIQQQNFLV 249 (265)
T ss_pred CCCCCEEEEEecCC-----CCCcEEEChhhcccEEE
Confidence 76778999988753 24679999999999997
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.1e-45 Score=344.59 Aligned_cols=252 Identities=24% Similarity=0.394 Sum_probs=205.2
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCCC
Q 014294 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPG 162 (427)
Q Consensus 83 Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 162 (427)
|+++|+||||+|++.|+|||||+++||+|..|..|.... ++.|+|++|+|++..+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~~-------------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLLP-------------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceecC--------------------
Confidence 899999999999999999999999999999998886442 3679999999998743
Q ss_pred CcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC-------
Q 014294 163 VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS------- 235 (427)
Q Consensus 163 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 235 (427)
.|.|.+.|++|+.+.|.+++|+|+|++. .++++.||+++...+.+. .....+||||||+...
T Consensus 56 -~~~~~i~Y~~G~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 -GATWSISYGDGSSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFF--SDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CcEEEEEeCCCCeEEEEEEEEEEEECCE--------EECCeEEEEEeecCcccc--ccccccceeeeccccccccccCC
Confidence 3799999999987899999999999874 345799999998765322 3456899999998643
Q ss_pred --cHHHHHHhcCCCCCceeeeccccCCcceEEeCCcCCC----CceeecCCCCCCcceEEEEEEEECCEEeeCCCCCccc
Q 014294 236 --SLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGT 309 (427)
Q Consensus 236 --s~~~~l~~~~~i~~~Fs~~l~~~~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~ 309 (427)
+++++|.+++. +++||+||.+ +..|+|+|||+|++ +++|+|+..+..+|.|++++|+||++....
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~------- 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS------- 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-------
Confidence 57788988865 7899999986 56899999999965 589999985578999999999999874321
Q ss_pred CCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECCCceEE
Q 014294 310 GDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLF 389 (427)
Q Consensus 310 ~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~ 389 (427)
.....++|||||+++++|.+++++|.+++.+... ... ..+|.++|+.. +|+|+|+|
T Consensus 196 ~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~--~~~-----~~~~~~~C~~~--~P~i~f~~--------------- 251 (278)
T cd06097 196 RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYY--DSE-----YGGWVFPCDTT--LPDLSFAV--------------- 251 (278)
T ss_pred cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcc--cCC-----CCEEEEECCCC--CCCEEEEE---------------
Confidence 1246799999999999999999999988742211 011 23455566543 89999999
Q ss_pred EeCCceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 390 QIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 390 ~~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
.||||++|||++|+
T Consensus 252 -----------------------~~ilGd~fl~~~y~ 265 (278)
T cd06097 252 -----------------------FSILGDVFLKAQYV 265 (278)
T ss_pred -----------------------EEEEcchhhCceeE
Confidence 49999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.5e-44 Score=344.57 Aligned_cols=287 Identities=28% Similarity=0.548 Sum_probs=233.1
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCC
Q 014294 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (427)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 161 (427)
+|+++|.||||+|++.|++||||+++||++..|..|. .|.....|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~----~~~~~~~y~~~~S~t~~~~~------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS----SCASSGFYNPSKSSTFSNQG------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT----HHCTSC-BBGGGSTTEEEEE-------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc----ccccccccccccccccccce-------------------
Confidence 5999999999999999999999999999999998761 11123689999999999865
Q ss_pred CCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC-------C
Q 014294 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA-------N 234 (427)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~-------~ 234 (427)
+.+.+.|++|+ ++|.+++|+|+|++. .+.++.||++....+... .....+||||||+. .
T Consensus 58 ---~~~~~~y~~g~-~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ---KPFSISYGDGS-VSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ---EEEEEEETTEE-EEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGGGTS
T ss_pred ---eeeeeeccCcc-cccccccceEeeeec--------cccccceecccccccccc--ccccccccccccCCcccccccC
Confidence 78999999999 899999999999875 344799999998644211 23467999999963 3
Q ss_pred CcHHHHHHhcCCCC-CceeeeccccC-CcceEEeCCcCCCC----ceeecCCCCCCcceEEEEEEEECCEEeeCCCCCcc
Q 014294 235 SSLLSQLAAAGNVR-KEFAHCLDVVK-GGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLG 308 (427)
Q Consensus 235 ~s~~~~l~~~~~i~-~~Fs~~l~~~~-~~G~l~~Gg~d~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~ 308 (427)
.+++.+|.++|.|. ++||++|.+.. ..|.|+||++|+++ ++|+|+. ...+|.|.+++|.++++.....
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~~----- 197 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFSS----- 197 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEEE-----
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-cccccccccccccccccccccc-----
Confidence 57999999999997 99999999863 57999999999775 7899998 7889999999999999832211
Q ss_pred cCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECCCceE
Q 014294 309 TGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYL 388 (427)
Q Consensus 309 ~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~ 388 (427)
....++||||++++++|.++++.|++++.+.... .+|..+|+....+|.|+|.| ++.+++|||++|+
T Consensus 198 --~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~ 264 (317)
T PF00026_consen 198 --SGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYI 264 (317)
T ss_dssp --EEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHE
T ss_pred --cceeeecccccccccccchhhHHHHhhhcccccc----------eeEEEecccccccceEEEee-CCEEEEecchHhc
Confidence 1245999999999999999999999999766432 44555666666799999999 7999999999999
Q ss_pred EEeCCc--eEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 389 FQIRED--VWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 389 ~~~~~~--~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
.+.... ..|+ +|...+. ....+.||||.+|||++|+
T Consensus 265 ~~~~~~~~~~C~~~i~~~~~--~~~~~~~iLG~~fl~~~y~ 303 (317)
T PF00026_consen 265 FKIEDGNGGYCYLGIQPMDS--SDDSDDWILGSPFLRNYYV 303 (317)
T ss_dssp EEESSTTSSEEEESEEEESS--TTSSSEEEEEHHHHTTEEE
T ss_pred ccccccccceeEeeeecccc--cccCCceEecHHHhhceEE
Confidence 987643 3786 7776332 2335789999999999997
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.8e-42 Score=331.15 Aligned_cols=253 Identities=26% Similarity=0.453 Sum_probs=207.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCC
Q 014294 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (427)
Q Consensus 82 ~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 161 (427)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999995
Q ss_pred CCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC------
Q 014294 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS------ 235 (427)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 235 (427)
.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+++.. ..+||||||+...
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS---------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCe--------EecceEEEEEecCC---------CCcceeeECCCCCcccccC
Confidence 36788999877999999999999875 34479999999832 3689999999775
Q ss_pred -----cHHHHHHhcCCCC-Cceeeecccc-CCcceEEeCCcCCCC----ceeecCCCCC-----CcceEEEEEEEECCEE
Q 014294 236 -----SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSPK----VKTTPMVPNM-----PHYNVILEEVEVGGNP 299 (427)
Q Consensus 236 -----s~~~~l~~~~~i~-~~Fs~~l~~~-~~~G~l~~Gg~d~~~----~~~~p~~~~~-----~~~~v~l~~i~v~~~~ 299 (427)
++++||.++|.|+ +.||+||.+. ..+|.|+||++|+.+ +.|+|+..+. .+|.|++++|+|+++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 7999999999997 8999999975 457999999999764 7899998543 6899999999999987
Q ss_pred eeCCCCCcccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcE
Q 014294 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLS 379 (427)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 379 (427)
+..+. ......++|||||++++||.+++++|.+++.+..... ...+..+| ..... |+|+|+| +|++
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~~~~C-----~~~~~-p~i~f~f-~g~~ 235 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLYVVDC-----DAKDD-GSLTFNF-GGAT 235 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEEEEeC-----CCCCC-CEEEEEE-CCeE
Confidence 65321 1235779999999999999999999999987664321 11122455 33334 9999999 7899
Q ss_pred EEECCCceEEEeC----CceEEE-EEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 380 LTVYPHEYLFQIR----EDVWCI-GWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 380 ~~l~~~~y~~~~~----~~~~Cl-~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
++||+++|+++.. .+..|+ +|...+ .+.||||++|||++|+
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~------~~~~iLG~~fl~~~y~ 281 (295)
T cd05474 236 ISVPLSDLVLPASTDDGGDGACYLGIQPST------SDYNILGDTFLRSAYV 281 (295)
T ss_pred EEEEHHHhEeccccCCCCCCCeEEEEEeCC------CCcEEeChHHhhcEEE
Confidence 9999999999864 256784 888765 2579999999999997
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.4e-41 Score=320.22 Aligned_cols=255 Identities=31% Similarity=0.606 Sum_probs=210.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCCC
Q 014294 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPG 162 (427)
Q Consensus 83 Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 162 (427)
|+++|.||||+|++.|++||||+++||+|..|..|..+.. ....|++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~---~~~~~~~~~s~~~~~~--------------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH---PRFKYDSSKSSTYKDT--------------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC---CCCccCccCCceeecC---------------------
Confidence 7899999999999999999999999999999988765431 0012777777776653
Q ss_pred CcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC------Cc
Q 014294 163 VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN------SS 236 (427)
Q Consensus 163 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 236 (427)
.|.|.+.|++|+ +.|.+++|+|+|++.. ++++.|||++.....+ .....+||||||+.. .+
T Consensus 57 -~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 57 -GCTFSITYGDGS-VTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF---SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCEEEEEECCCe-EEEEEEEeEEEECCEE--------EeceEEEEEeccCCcc---cccccceEeecCCcccccccCCC
Confidence 389999999987 7999999999998753 4589999999886533 345789999999987 78
Q ss_pred HHHHHHhcCCCC-Cceeeecccc---CCcceEEeCCcCCC----CceeecCCCC-CCcceEEEEEEEECCEEeeCCCCCc
Q 014294 237 LLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPN-MPHYNVILEEVEVGGNPLDLPTSLL 307 (427)
Q Consensus 237 ~~~~l~~~~~i~-~~Fs~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~-~~~~~v~l~~i~v~~~~~~~~~~~~ 307 (427)
+++||.+++.|. ++||+||.+. ...|.|+||++|+. ++.|+|++.. ..+|.|.+++|.|+++....
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----- 198 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----- 198 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee-----
Confidence 999999999986 9999999984 47899999999974 5899999965 78999999999999974111
Q ss_pred ccCCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECCCce
Q 014294 308 GTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEY 387 (427)
Q Consensus 308 ~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y 387 (427)
......++|||||++++||.+++++|.+++.+.... ...|+...+.....+|+|+|+|
T Consensus 199 -~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~p~i~f~f------------- 256 (283)
T cd05471 199 -SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS--------SDGGYGVDCSPCDTLPDITFTF------------- 256 (283)
T ss_pred -cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------cCCcEEEeCcccCcCCCEEEEE-------------
Confidence 123567999999999999999999999999876542 1345555556667899999999
Q ss_pred EEEeCCceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 388 LFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 388 ~~~~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
.||||+.|||++|+
T Consensus 257 -------------------------~~ilG~~fl~~~y~ 270 (283)
T cd05471 257 -------------------------LWILGDVFLRNYYT 270 (283)
T ss_pred -------------------------EEEccHhhhhheEE
Confidence 48999999999997
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.8e-31 Score=230.45 Aligned_cols=162 Identities=40% Similarity=0.721 Sum_probs=131.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCCC
Q 014294 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPG 162 (427)
Q Consensus 83 Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 162 (427)
|+++|.||||+|++.|+|||||+++|++|. .+.|+|++|+||+.++|.++.|....+.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 899999999999999999999999999981 279999999999999999999987765423344557
Q ss_pred CcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHHH
Q 014294 163 VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLA 242 (427)
Q Consensus 163 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~ 242 (427)
+.|.|.+.|++++.+.|.+++|+|+++....+. ..+.++.|||++...+.+ ...+||||||+.+.||+.||+
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~-----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF-----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS-----TTEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC-----cCCCcccccCCCcccHHHHHH
Confidence 889999999999999999999999999875432 244689999999988654 368999999999999999999
Q ss_pred hcCCCCCceeeeccc--cCCcceEEeCC
Q 014294 243 AAGNVRKEFAHCLDV--VKGGGIFAIGD 268 (427)
Q Consensus 243 ~~~~i~~~Fs~~l~~--~~~~G~l~~Gg 268 (427)
++ ..++||+||.+ .+..|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 55899999998 36789999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=5e-23 Score=166.78 Aligned_cols=108 Identities=36% Similarity=0.661 Sum_probs=90.2
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCC-CCCCCCCcceecCCCcccCCcCCCCCCCCCCCC
Q 014294 85 TKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLF-DPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGV 163 (427)
Q Consensus 85 ~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y-~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~ 163 (427)
++|.||||+|++.|+|||||+++||+|..|..|..+. ++.| +|++|++++...
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~~~--------------------- 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSDNG--------------------- 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCCCC---------------------
Confidence 4799999999999999999999999999998776432 2455 999999988754
Q ss_pred cceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeec
Q 014294 164 RCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGF 230 (427)
Q Consensus 164 ~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGL 230 (427)
|.|.+.|++|+ +.|.+++|+|+|++.. ++++.|||+....+.+. .....+|||||
T Consensus 55 -~~~~~~Y~~g~-~~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~~GilGL 109 (109)
T cd05470 55 -CTFSITYGTGS-LSGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATF--LPALFDGILGL 109 (109)
T ss_pred -cEEEEEeCCCe-EEEEEEEEEEEECCEE--------ECCEEEEEEEecCCccc--cccccccccCC
Confidence 89999999997 6899999999997752 45899999999877542 24568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.84 E-value=8.3e-21 Score=164.65 Aligned_cols=139 Identities=29% Similarity=0.541 Sum_probs=106.6
Q ss_pred cceEEEEEEEECCEEeeCCCCCccc-CCCCcEEEeccccccccCHHHHHHHHHHHHHhCCCCc----ccccCCCCceeee
Q 014294 285 HYNVILEEVEVGGNPLDLPTSLLGT-GDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLK----MHTVEEQFSCFQF 359 (427)
Q Consensus 285 ~~~v~l~~i~v~~~~~~~~~~~~~~-~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~----~~~~~~~~~C~~~ 359 (427)
+|.|+|++|+||++++.++...|+. ++.++++|||||++++||+++|++|.+++.+...... .........||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999999887743 3468899999999999999999999999988765332 1223344699998
Q ss_pred cC----CCCccCceEEEEecCCcEEEECCCceEEEeCCceEEEEEEeCCCCCCCCCCeEEEcccccccccC
Q 014294 360 SK----NVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML 426 (427)
Q Consensus 360 ~~----~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~yv 426 (427)
+. .....+|+|+|+|++|++++|++++|++..+++.+|++|..... ++.+..|||..+|++++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~---~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDA---DDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETS---TTSSSEEE-HHHCCTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCC---CCCCcEEECHHHhcCcEE
Confidence 77 45568999999998899999999999999988899999998811 235689999999999986
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.76 E-value=6.6e-05 Score=58.47 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=61.0
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCC
Q 014294 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (427)
Q Consensus 81 ~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 160 (427)
+.|++++.|+ .+++.+++|||++.+|+.......+.. ...
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~-----------------~~~--------------------- 40 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL-----------------PLT--------------------- 40 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC-----------------Ccc---------------------
Confidence 3689999999 699999999999999997632211110 000
Q ss_pred CCCcceeeEEcCCCCeeeeeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCC
Q 014294 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQ 232 (427)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~ 232 (427)
......+...+|.........+.+++++.. ..++.+........ +.+||||+.+
T Consensus 41 --~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCccc--------CCceEeChHH
Confidence 013556677777765666668889997742 22455555443211 3689999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.56 E-value=0.056 Score=44.15 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 014294 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNC 111 (427)
Q Consensus 79 ~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~ 111 (427)
.+|.|++++.|. .+++.++||||++.+-++.
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 579999999997 6899999999999998865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.38 E-value=0.23 Score=37.61 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.8
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 014294 86 KVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (427)
Q Consensus 86 ~i~vGtP~q~~~v~lDTGS~~~Wv~~~ 112 (427)
++.|+ .+++.+++|||++.+.+...
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 56777 58999999999999888653
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.02 E-value=0.64 Score=38.04 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=28.6
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 014294 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (427)
Q Consensus 79 ~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (427)
....+++++.|+ .+++.+++|||++.+++....
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 457789999999 689999999999999997643
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.70 E-value=0.13 Score=39.50 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=25.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 014294 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (427)
Q Consensus 83 Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (427)
|++++.|+ .+++.+++||||+.+++..+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 699999999999999997643
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=88.87 E-value=0.82 Score=37.26 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCcceEEEEEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 283 MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 283 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
.++|.++ +.|||+.+. +++|||.+.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4556544 778988654 89999999999999887664
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.72 E-value=0.75 Score=33.60 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC
Q 014294 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS 115 (427)
Q Consensus 79 ~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~ 115 (427)
..+.+++.+.|| .+.+.+++|||++...|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 468899999999 59999999999999999775543
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=87.79 E-value=0.73 Score=34.75 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=24.8
Q ss_pred EEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 292 EVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
.++|||+.+. +++|||++.+.+.++.++++
T Consensus 2 ~v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 3678887664 89999999999998888765
No 35
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=86.04 E-value=3.3 Score=35.20 Aligned_cols=21 Identities=14% Similarity=0.388 Sum_probs=18.4
Q ss_pred EEEeccccccccCHHHHHHHH
Q 014294 315 TIIDSGTTLAYLPPMLYDLVL 335 (427)
Q Consensus 315 ~iiDSGts~~~lp~~~~~~l~ 335 (427)
++||||+...+.-.++.+.|-
T Consensus 48 vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEeCCCccceeehhhHHhhC
Confidence 999999999999988877763
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.37 E-value=1.6 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=26.1
Q ss_pred EEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 291 EEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 291 ~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
..+.|+++.+. +++|||.+-.+++.+..+.|
T Consensus 11 v~~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 11 VPVSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 34678887765 89999999999999988776
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.93 E-value=1.3 Score=34.41 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.8
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 014294 84 FTKVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (427)
Q Consensus 84 ~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (427)
+.+|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5678888 589999999999999997643
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=84.60 E-value=1.4 Score=33.60 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=26.0
Q ss_pred EEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 292 EVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
.+.|||+.+. +.+|||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHh
Confidence 4788998876 89999999999999988765
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=84.37 E-value=1.9 Score=32.81 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.4
Q ss_pred EEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 291 EEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 291 ~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
..+.||++.+. +++|||++.+.++.+..+.+
T Consensus 5 v~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 5 VPVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 45778887765 89999999999999877664
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=80.13 E-value=2.2 Score=32.24 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
+.|||+.+. +++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 678888765 89999999999999888765
No 41
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.66 E-value=3 Score=31.77 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.3
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 014294 86 KVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (427)
Q Consensus 86 ~i~vGtP~q~~~v~lDTGS~~~Wv~~~ 112 (427)
.+.|+ .|.+.++||||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 79999999999999999763
No 42
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=76.42 E-value=8.1 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=24.2
Q ss_pred eEEEEEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHH
Q 014294 287 NVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDL 333 (427)
Q Consensus 287 ~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~ 333 (427)
.+-.--+.|++..+. ++||||++-.++.......
T Consensus 20 ~vi~g~~~I~~~~~~-------------vLiDSGAThsFIs~~~a~~ 53 (135)
T PF08284_consen 20 DVITGTFLINSIPAS-------------VLIDSGATHSFISSSFAKK 53 (135)
T ss_pred CeEEEEEEeccEEEE-------------EEEecCCCcEEccHHHHHh
Confidence 344445566666544 8999999999988776554
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.06 E-value=3.3 Score=31.32 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.2
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCC
Q 014294 86 KVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (427)
Q Consensus 86 ~i~vGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (427)
.+.|. .+++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 35565 689999999999999997643
No 44
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=74.24 E-value=4.5 Score=32.97 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=24.4
Q ss_pred EEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 292 EVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
.+.|||..+. +++|||++.+.++.+..+++
T Consensus 20 ~~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 20 NVEINGVPVK-------------AFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEEECCEEEE-------------EEEeCCCceEEeCHHHHHHc
Confidence 3567877654 89999999999999887663
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=70.84 E-value=3.4 Score=32.00 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=22.2
Q ss_pred EEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHH
Q 014294 291 EEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPML 330 (427)
Q Consensus 291 ~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~ 330 (427)
..|.++|+.+. ++||||+..+.++.+.
T Consensus 8 i~v~i~g~~i~-------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGKKIK-------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTEEEE-------------EEEETTBSSEEESSGG
T ss_pred EEEeECCEEEE-------------EEEecCCCcceecccc
Confidence 45778888765 9999999999999764
No 46
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=67.36 E-value=12 Score=33.21 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCcceEEEEEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHH
Q 014294 283 MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDL 333 (427)
Q Consensus 283 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~ 333 (427)
++||.++ ..|||+.+. .++|||.|.+.++.+..+.
T Consensus 103 ~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHH
Confidence 4667654 789999886 8999999999999886654
No 47
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=67.09 E-value=21 Score=27.23 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=44.8
Q ss_pred CCcEEEeccccccccCHHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCCCccCceEEEEecCCcEEEECCCceEE-E
Q 014294 312 ERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLF-Q 390 (427)
Q Consensus 312 ~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~-~ 390 (427)
+...++|||.....+|....+.- . .-.++.++=++|..+..-.+..+. .
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~~~-------~-----------------------~~~~~~l~AANgt~I~tyG~~~l~ld 58 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTKKS-------L-----------------------KPSPLTLQAANGTPIATYGTRSLTLD 58 (89)
T ss_pred CcEEEEeCCCceEeecccccccc-------c-----------------------cCCceEEEeCCCCeEeeeeeEEEEEE
Confidence 45689999999999997654320 0 012345555666666655444332 2
Q ss_pred eCCc-eEEEEEEeCCCCCCCCCCeEEEcccccccc
Q 014294 391 IRED-VWCIGWQNGGLQNHDGRQMILLGGTVYSCF 424 (427)
Q Consensus 391 ~~~~-~~Cl~i~~~~~~~~~~~~~~ilG~~fLr~~ 424 (427)
.+.. ..=+-|.-.++ +..|||.-||+++
T Consensus 59 lGlrr~~~w~FvvAdv------~~pIlGaDfL~~~ 87 (89)
T cd06094 59 LGLRRPFAWNFVVADV------PHPILGADFLQHY 87 (89)
T ss_pred cCCCcEEeEEEEEcCC------CcceecHHHHHHc
Confidence 2222 12223333342 3579999999986
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=64.61 E-value=7.6 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEeccccccccCHHHHHHHH
Q 014294 315 TIIDSGTTLAYLPPMLYDLVL 335 (427)
Q Consensus 315 ~iiDSGts~~~lp~~~~~~l~ 335 (427)
+.+|||++...+|...++.+.
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999999887764
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=64.14 E-value=8.7 Score=31.37 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=24.5
Q ss_pred EEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHHH
Q 014294 291 EEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (427)
Q Consensus 291 ~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 334 (427)
-.+++||+.+. |++|||+..+.++.+..+++
T Consensus 27 I~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 27 INCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 35788999876 99999999999999988773
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=55.27 E-value=19 Score=31.99 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCC
Q 014294 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYP 157 (427)
Q Consensus 78 ~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~ 157 (427)
..+|.|.++..|- .|++..++|||-+.+.++...-.. --||... +
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~------l---------------- 145 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNS------L---------------- 145 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCccc------c----------------
Confidence 3579999999998 799999999999999987643110 0133211 0
Q ss_pred CCCCCCcceeeEEcCCCCeeeeeEEEEEEEEcccC
Q 014294 158 SCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192 (427)
Q Consensus 158 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~ 192 (427)
..++.+.-.+|.......--|.|.|++..
T Consensus 146 ------~y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 146 ------DYTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred ------CCceEEEccCCccccceEEeeeEEEccEE
Confidence 13455555678755556778999998753
No 51
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=49.43 E-value=22 Score=26.36 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=13.7
Q ss_pred CcchhHHHHHHHHHHHHHhhhcC
Q 014294 2 GGLRLLALVVVTVAVVHQWAVGG 24 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (427)
|..|+++|-++|+.+..++|+..
T Consensus 1 MaRRlwiLslLAVtLtVALAAPs 23 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPS 23 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccc
Confidence 45566666666666666655553
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=47.67 E-value=26 Score=30.01 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=21.9
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeC
Q 014294 84 FTKVGLGTPTDEYYVQVDTGSDLLWVNC 111 (427)
Q Consensus 84 ~~~i~vGtP~q~~~v~lDTGS~~~Wv~~ 111 (427)
...+.+++-..++.++|||||....+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 3445555557999999999999988866
No 53
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.31 E-value=12 Score=30.23 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.1
Q ss_pred EEEecccc-ccccCHHHHHHH
Q 014294 315 TIIDSGTT-LAYLPPMLYDLV 334 (427)
Q Consensus 315 ~iiDSGts-~~~lp~~~~~~l 334 (427)
.++|||.+ ++.+|..+++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998875
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.72 E-value=9.8 Score=31.08 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=26.0
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCC
Q 014294 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCP 118 (427)
Q Consensus 79 ~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~ 118 (427)
.....|++++|+ .++++.++|||...+-+..+-+..|.
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 356789999999 69999999999999999764445554
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=45.97 E-value=13 Score=33.03 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=13.3
Q ss_pred cEEEeccccccccCHHHH
Q 014294 314 GTIIDSGTTLAYLPPMLY 331 (427)
Q Consensus 314 ~~iiDSGts~~~lp~~~~ 331 (427)
.+++|||.+.=.....+.
T Consensus 22 ~~~vDTGAt~C~~~~~ii 39 (201)
T PF02160_consen 22 HCYVDTGATICCASKKII 39 (201)
T ss_pred EEEEeCCCceEEecCCcC
Confidence 389999998877654443
No 56
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=45.89 E-value=15 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=17.8
Q ss_pred CcEEEeccccccc-cCHHHHHHH
Q 014294 313 RGTIIDSGTTLAY-LPPMLYDLV 334 (427)
Q Consensus 313 ~~~iiDSGts~~~-lp~~~~~~l 334 (427)
-.+++|||.+... +|.++++++
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 3489999999886 998887663
No 57
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=43.96 E-value=21 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=14.7
Q ss_pred cEEEeccccccccCHHH
Q 014294 314 GTIIDSGTTLAYLPPML 330 (427)
Q Consensus 314 ~~iiDSGts~~~lp~~~ 330 (427)
.++||||++.++++..-
T Consensus 13 ~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 13 NVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEeCCCCCEEEeCCC
Confidence 38999999999998754
No 58
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=40.88 E-value=17 Score=18.63 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=8.1
Q ss_pred CCcchhHHHHHH
Q 014294 1 MGGLRLLALVVV 12 (427)
Q Consensus 1 m~~~~~~~~~~~ 12 (427)
||.+.+.+++++
T Consensus 1 MMk~vIIlvvLL 12 (19)
T PF13956_consen 1 MMKLVIILVVLL 12 (19)
T ss_pred CceehHHHHHHH
Confidence 777777665554
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.95 E-value=39 Score=26.68 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEeCCCCc----eEEEEEEcCCCcee-EeC
Q 014294 85 TKVGLGTPTD----EYYVQVDTGSDLLW-VNC 111 (427)
Q Consensus 85 ~~i~vGtP~q----~~~v~lDTGS~~~W-v~~ 111 (427)
+++.|..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5788888733 68999999999764 543
No 60
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=32.25 E-value=80 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=16.7
Q ss_pred EEEeccccccccCHHHHHH
Q 014294 315 TIIDSGTTLAYLPPMLYDL 333 (427)
Q Consensus 315 ~iiDSGts~~~lp~~~~~~ 333 (427)
+++|||++...+..+.++.
T Consensus 12 ~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 12 ALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEcCCCcccccCHHHHHH
Confidence 8999999999999887754
No 61
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.36 E-value=42 Score=25.97 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=5.8
Q ss_pred chhHHHHHHHHHH
Q 014294 4 LRLLALVVVTVAV 16 (427)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (427)
.+.++||.|++|+
T Consensus 3 SK~~llL~l~LA~ 15 (95)
T PF07172_consen 3 SKAFLLLGLLLAA 15 (95)
T ss_pred hhHHHHHHHHHHH
Confidence 4444444444333
No 62
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=28.18 E-value=84 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=22.5
Q ss_pred EEECCEEeeCCCCCcccCCCCcEEEeccccccccCHHHHHH
Q 014294 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDL 333 (427)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~ 333 (427)
-++||..+. |.+|||+-.+.+...-.+.
T Consensus 3 Ck~nG~~vk-------------AfVDsGaQ~timS~~caer 30 (103)
T cd05480 3 CQCAGKELR-------------ALVDTGCQYNLISAACLDR 30 (103)
T ss_pred eeECCEEEE-------------EEEecCCchhhcCHHHHHH
Confidence 356777665 9999999999999887765
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=27.44 E-value=56 Score=30.48 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=14.3
Q ss_pred EEEeccccccccCHHH
Q 014294 315 TIIDSGTTLAYLPPML 330 (427)
Q Consensus 315 ~iiDSGts~~~lp~~~ 330 (427)
+++|||++.+++|..-
T Consensus 16 v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 16 LDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEeCCCCceeEeeCC
Confidence 9999999999999653
No 64
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.83 E-value=63 Score=25.00 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=5.8
Q ss_pred chhHHHHHHHHHHH
Q 014294 4 LRLLALVVVTVAVV 17 (427)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (427)
++||.|+++++.++
T Consensus 6 ~llL~l~LA~lLli 19 (95)
T PF07172_consen 6 FLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433343
No 65
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.63 E-value=1.3e+02 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=25.4
Q ss_pred CceEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 014294 80 TGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (427)
Q Consensus 80 ~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~ 112 (427)
...-.+.+.|.+ ++..+++|+|++...|...
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 345677888885 9999999999999988653
No 66
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=20.73 E-value=1.1e+02 Score=28.42 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.0
Q ss_pred ceEEEE---EEeCC---CCceEEEEEEcCCCceeEeCC
Q 014294 81 GLYFTK---VGLGT---PTDEYYVQVDTGSDLLWVNCA 112 (427)
Q Consensus 81 ~~Y~~~---i~vGt---P~q~~~v~lDTGS~~~Wv~~~ 112 (427)
..|.++ |.||. +.....+++|||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456554 58873 233467999999999999863
No 67
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=20.67 E-value=95 Score=29.04 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=12.6
Q ss_pred EEEeccccccccC
Q 014294 315 TIIDSGTTLAYLP 327 (427)
Q Consensus 315 ~iiDSGts~~~lp 327 (427)
+++|||++.+++|
T Consensus 18 v~~DTgS~~~wv~ 30 (295)
T cd05474 18 VLLDTGSSDLWVP 30 (295)
T ss_pred EEEeCCCCcceee
Confidence 9999999999999
No 68
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.35 E-value=1.2e+02 Score=29.13 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.7
Q ss_pred EEEeccccccccCHH
Q 014294 315 TIIDSGTTLAYLPPM 329 (427)
Q Consensus 315 ~iiDSGts~~~lp~~ 329 (427)
++||||++.+++|..
T Consensus 19 v~~DTGS~~~wv~~~ 33 (326)
T cd06096 19 LILDTGSSSLSFPCS 33 (326)
T ss_pred EEEeCCCCceEEecC
Confidence 999999999999865
Done!