BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014296
         (427 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 79/222 (35%), Gaps = 58/222 (26%)

Query: 27  FVQFPQ---NFDNVTKNELYSNSLRIYNEVEF----EGMDGYGGPIYCGSGCFHRREILC 79
            VQ P    N D + +N    +     NE+ +     G+D +GG  +CGS    RR  L 
Sbjct: 271 LVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD 330

Query: 80  GRKYDKETKIELKRENDXXXXXXXXXXXXXXXXXXXCTYETNTQWGKEIGLKYGCPVEDV 139
                                                  E     G+ I        ED 
Sbjct: 331 ---------------------------------------EAGGFAGETI-------TEDA 344

Query: 140 ITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAH 199
            T + I  +GWKS+Y   +R    G+ P T   F+ QR RW+ G  Q++L +    R   
Sbjct: 345 ETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGL 402

Query: 200 GKISXXXXXXXXXXXXWAPNCLATLFYSIVPSLYLLKGIPLF 241
           G I+            + P  L  + + + P +YL  GI +F
Sbjct: 403 G-IAQRLCYLNSMSFWFFP--LVRMMFLVAPLIYLFFGIEIF 441


>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
           EUKARYOTIC Rad54
          Length = 644

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 125 GKEIGLKYGCPVEDVI-TGISIQCQG--W----KSVYCKPERDAFLGVSPTTLLQ 172
           G+ I   YGC + D +  G ++QC    W    +S  CKPE D  + VSP++L++
Sbjct: 73  GRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,771,181
Number of Sequences: 62578
Number of extensions: 459486
Number of successful extensions: 1015
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 12
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)