BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014300
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 277 bits (709), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 202/349 (57%), Gaps = 23/349 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS- 112
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
AG E V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 113 -AGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE---- 167
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 168 --------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 427
L PIQ RY M +S LD+VL + + QAMG RR
Sbjct: 280 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 205/352 (58%), Gaps = 23/352 (6%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYD 135
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ + Y + F IVD HAIT+P D
Sbjct: 33 TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQ--------HDYNSYFCIVDQHAITVPQD 84
Query: 136 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 195
+L K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+
Sbjct: 85 RLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKD 144
Query: 196 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXX 255
KS G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 145 KSK--GNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND- 201
Query: 256 XXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 315
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + K
Sbjct: 202 -----------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKK 250
Query: 316 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDAL 375
IK TDS ++FD +P +NLL+IY ++ T E+ + + +G FK L + +
Sbjct: 251 IKSAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVV 310
Query: 376 IEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 427
+ L PIQ RY E++ +S LD++L L + AMG R+
Sbjct: 311 VNALKPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 267 bits (683), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 210/365 (57%), Gaps = 25/365 (6%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFF 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWV--------QMQDDYDCIYC 52
Query: 124 IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 183
IVDLHAIT D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T
Sbjct: 53 IVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTY 112
Query: 184 IGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 243
G L++M QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R+
Sbjct: 113 FGELSRMTQFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171
Query: 244 LAERVNXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 303
+A R N IFK+PEP IP AGARVMSL D KMSKS + + I
Sbjct: 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVI 219
Query: 304 NLL-DPKDVIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 360
LL DPK V+ KIKR TDS A + +D ++ +NLL I ++G++ E+ +
Sbjct: 220 ELLEDPKSVV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFT 278
Query: 361 NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQ 420
+G K + DA+ L +Q RY D A L V+ TL VY+
Sbjct: 279 GQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYE 338
Query: 421 AMGFL 425
A+GF+
Sbjct: 339 AIGFV 343
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 264 bits (675), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 198/348 (56%), Gaps = 23/348 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSA 113
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
A LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 114 GA--AAAAAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG----- 166
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 167 -------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 280 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 194/349 (55%), Gaps = 23/349 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS- 112
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
AG E V LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 113 -AGKEAVSAGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE---- 167
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK
Sbjct: 168 --------LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 427
L PIQ RY +S LD+VL + QA G RR
Sbjct: 280 LRPIQERYHH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/348 (42%), Positives = 193/348 (55%), Gaps = 23/348 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS- 112
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
AG E V LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 113 -AGKEAVSAGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE---- 167
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK
Sbjct: 168 --------LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY +S LD+VL + QA G R
Sbjct: 280 LRPIQERYHH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGR 326
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 206/359 (57%), Gaps = 23/359 (6%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQW--------QQMQDDYDCQYCVVDLHAITV 52
Query: 133 PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ 192
D Q L +AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M Q
Sbjct: 53 RQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQ 112
Query: 193 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXX 252
FK+KS + + V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N
Sbjct: 113 FKDKSARYAND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN--- 168
Query: 253 XXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDV 311
IF +PEP IP ARVMSL D KMSKS + ++ I LL DPK +
Sbjct: 169 ------NIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSI 222
Query: 312 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN-WGTFK 368
I KI + +TD+ + +D + NL+ +Y +GKT E+ + + +G FK
Sbjct: 223 I-KKINKAQTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFK 281
Query: 369 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 427
+ +A++ L P+Q Y+ I +D YL+ V+ TL VY A+GF+ R
Sbjct: 282 KDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 185/348 (53%), Gaps = 50/348 (14%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+Q +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 48
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q
Sbjct: 49 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------ 102
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 103 ------VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------ 150
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 ---------FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK- 200
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
SS G + P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 201 ----SSEG----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 252
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 253 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 299
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 184/348 (52%), Gaps = 53/348 (15%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM-------- 105
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 106 ------VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------ 153
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 154 ---------FTIPE------ARRIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK- 197
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
SS G + P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 198 ----SSEG----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 249
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 250 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 296
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 181/348 (52%), Gaps = 57/348 (16%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+Q +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 48
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q
Sbjct: 49 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------ 102
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 103 ------VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------ 150
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 ---------FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK- 200
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 201 ---------------SPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 245
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 246 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 292
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 180/348 (51%), Gaps = 63/348 (18%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------ 107
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER
Sbjct: 108 ------VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER----------- 150
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 --------FFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 202
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
+NLL+IY +SG++ E+ + FK L +IE
Sbjct: 203 A-----------------ISNLLNIYSTLSGQSIEELERQY------VFKADLAQVVIET 239
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 240 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 286
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 179/349 (51%), Gaps = 23/349 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I S + PTG I +G Y+GA++ ++ LQ + Y F I D AIT+ D +
Sbjct: 2 KTIFSAICPTGVITIGRYIGALRQFVELQ--------HEYNCYFCIADQSAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+ S V AH + W L IG L + FKE S
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS- 112
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
AG E V LLT+P + A+ ILLY +D VPVGE KQ ELTR+LAER N
Sbjct: 113 -AGKEAVSAGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFNKRYGE---- 167
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+F +PE IP GAR+ SL D +S P+ ++ I LLD I KIK
Sbjct: 168 --------LFTIPEARIPKVGARIXSLVDPTKSXYQSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 427
L PIQ RY +S LD+VL + QA G RR
Sbjct: 280 LRPIQERYHH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 189/352 (53%), Gaps = 30/352 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP--YDT 136
KR++SG+QP+G IH+GNYLGAIK W+A+ + + F IVD HA+T P YD
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGE------KLGRDAFFCIVDYHALTNPLAYDP 55
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
L++ T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K
Sbjct: 56 STLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDK 115
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXX 256
+ K E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 116 ASKQ--ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGET- 172
Query: 257 XXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI
Sbjct: 173 -----------FPEPQALLNPEAPRVPGI-DGKAKMSKSL---GNTIGLLEPEESIWQKI 217
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGTF--KPLLTD 373
+ D + + PE L + + K E + EE + GT+ K +L D
Sbjct: 218 QHLPDDPQR-IRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFD 276
Query: 374 ALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 425
L+E L PI+ R E + D Y+ L T+ V + +G L
Sbjct: 277 HLMEALRPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLL 328
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 181/348 (52%), Gaps = 58/348 (16%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+Q +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 48
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q
Sbjct: 49 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------ 102
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 103 ------VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------ 150
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 ---------FTIPE--------RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK- 192
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
SS G + P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 193 ----SSEG----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 244
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 245 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 291
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 175/348 (50%), Gaps = 70/348 (20%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+Q +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 48
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q
Sbjct: 49 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------ 102
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 103 ------VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------ 150
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 ---------FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK- 200
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
SS G P +NLL+IY + G FK L +IE
Sbjct: 201 ----SSEGT-------PGISNLLNIYSTL-----------------GVFKADLAQVVIET 232
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 426
L PIQ RY M +S LD+VL + + QAMG R
Sbjct: 233 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 279
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 187 bits (475), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 34/331 (10%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
KR ++G+Q +G HLGNYLG +++ I LQ C L + F+ DLH+IT+ + Q
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFV--------FVADLHSITVDFQPQA 56
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + + LA G+D KA +F+QS + H + +L+ + +G L +M QFK K
Sbjct: 57 LKQNNFDLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKA 116
Query: 199 KA-----GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXX 253
+ G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 117 EQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFK 176
Query: 254 XXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 313
++P+ + R+M L D KMSKS+ + I L DPK+V+
Sbjct: 177 LK------------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVV 224
Query: 314 NKIKRCKTDSSAGLEFDNLERPECNNLLSIY---------QLISGKTKGEVAEECQNMNW 364
KI++ TDS + F + +P N+L+I Q ++ + ++ ++
Sbjct: 225 KKIRQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSY 284
Query: 365 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 395
K LT+A + L IQ + E+I + +
Sbjct: 285 LDLKNALTEATVNLLVNIQRKREQISREQVF 315
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 176/354 (49%), Gaps = 36/354 (10%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYD-TQQ 138
RI+SG++PTG +H+G+ +GA++NW+ LQ + E +F+ D HA+T YD +
Sbjct: 14 RILSGMRPTGKLHIGHLVGALENWVKLQ-------EEGNECFYFVADWHALTTHYDDVSK 66
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + TR+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE
Sbjct: 67 LKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKS 126
Query: 199 KAGGENVGVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXX 257
+ +++ A L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R N
Sbjct: 127 ELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN-------- 178
Query: 258 XXXXXXXXAIFKVPEPLIPPAGARVMSL--TDGLSKMSKSAPSDQSRINLLDPKDVIANK 315
+F PE ++ +RV L TDG KMSKS + INL + +
Sbjct: 179 ----YLYDEVFPEPEAIL----SRVPKLPGTDG-RKMSKSY---GNIINLEISEKELEQT 226
Query: 316 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWGTF--KPLL 371
I R TD A + + PE + +Q IS + V E C + G K LL
Sbjct: 227 ILRMMTD-PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLL 285
Query: 372 TDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 425
+ L PI + +I D Y+D V+ T+ V +AM +
Sbjct: 286 LKNMKRKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 174/350 (49%), Gaps = 39/350 (11%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQL 139
R+++G+QP+G +H+GNY GAIK + Q + FI + HA T D ++L
Sbjct: 5 RVLTGLQPSGDLHIGNYFGAIKQXVDAQ--------EKSQXFXFIANYHAXTSSQDGEKL 56
Query: 140 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 199
+ + + AA +L+ GID K+ ++QS V+ EL W+LS TP G L + +K+K
Sbjct: 57 KQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV-- 114
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 259
A G + L +YPVL A+DILL+ + VPVG+DQ QH+E+ R++A +VN
Sbjct: 115 AKGLSASHGLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGE----- 169
Query: 260 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 319
IF +PE + A V+ TDG +K + S Q+ I++ + + +I
Sbjct: 170 -------IFTLPEARVNEEVAVVVG-TDG----AKXSKSYQNTIDIFSSEKTLKKQISSI 217
Query: 320 KTDSSAGLEFDNLERP---ECNNLLSIYQLI---SGKTKGEVAEECQNMNWGTFKPLLTD 373
TDS+A LE P E N+ I +L SG+ + ++ E +G FK L +
Sbjct: 218 VTDSTA------LEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNE 271
Query: 374 ALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMG 423
+ + + +Y E++ ++L ++L +Y+ +G
Sbjct: 272 LVNAYFKEAREKYNELLEKPSHLKEILDFGATKARKIAQEKXQKIYEKIG 321
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 145/351 (41%), Gaps = 32/351 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT- 136
+ R+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D
Sbjct: 2 RPRVLTGDRPTGALHLGHLAGSLQNRV--------RLQDEAELFVLLADVQALTDHFDRP 53
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-E 195
+Q+ + A YLA G+D K + VQS V EL + + L + K E
Sbjct: 54 EQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAE 113
Query: 196 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXX 255
+ K GE V YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 114 IAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPV 173
Query: 256 XXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 315
+ +VP R+ L DG +KMSKS + I L D D +A K
Sbjct: 174 LAEPQAQ----LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARK 216
Query: 316 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLL 371
+ TD L + R E N + + A + Q G K L
Sbjct: 217 VMGMYTDPGH-LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHL 275
Query: 372 TDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 422
D L L PI+ R E D + + + TL V +AM
Sbjct: 276 IDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 326
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 143/348 (41%), Gaps = 32/348 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT-QQL 139
+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+
Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRV--------RLQDEAELFVLLADVQALTDHFDRPEQV 76
Query: 140 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSH 198
+ A YLA G+D K + VQS V EL + + L + K E +
Sbjct: 77 RENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQ 136
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
K GE V YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 137 KGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAE 196
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+ +VP R+ L DG +KMSKS + I L D D +A K+
Sbjct: 197 PQAQ----LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMG 239
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDA 374
TD L + R E N + + A + Q G K L D
Sbjct: 240 MYTDPGH-LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDV 298
Query: 375 LIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 422
L L PI+ R E D + + + TL V +AM
Sbjct: 299 LNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 346
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 102/274 (37%), Gaps = 63/274 (22%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT 131
A + + +++G P+G H G+ L + I LQ +N ++ I D A
Sbjct: 64 AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQ-------KNGFKVFVAIADAEAFA 115
Query: 132 LPY--DTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNK 189
+ + + A E A +A G+D + Q+ + TP +
Sbjct: 116 VRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQT------------NRGTP---YFR 160
Query: 190 MIQFKEKSHKAGGENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQ 236
+IQ A LT +MAS DIL Q D VPVG DQ
Sbjct: 161 LIQLFSGKVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDP 220
Query: 237 HLELTRELAERVNXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLS--KMSK 294
HL LTR+LA+R+ + ++ P + L GL KMS
Sbjct: 221 HLRLTRDLADRM----------------AGVVELERP-----ASTYHKLQPGLDGRKMSS 259
Query: 295 SAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 328
S P S I L DP +V NK+ R T A E
Sbjct: 260 SRPD--STIFLTDPPEVARNKLFRALTGGRATAE 291
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT- 136
K R G +P+G IHLG + + +Q DL + +E + + D+HA T
Sbjct: 32 KPRAYVGYEPSGEIHLG-------HMMTVQKLMDLQ-EAGFEIIVLLADIHAYLNEKGTF 83
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKE 195
+++++ +++A G+D S+A + S + + + + I LN+ + E
Sbjct: 84 EEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDE 143
Query: 196 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 243
S + E+ V+ + YP++ A DI D G DQ++ L RE
Sbjct: 144 VSRRK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 19/165 (11%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQLSKA 142
G +P+G IHLG+YL IK I LQ ++ + + DLHA + + ++ K
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGELDEIRKI 85
Query: 143 TRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHK 199
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 86 GDYNKKVFEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE-- 140
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
EN VA + YP++ +DI D G +Q++ L REL
Sbjct: 141 --DENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 50/261 (19%)
Query: 83 SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA---ITLPYDTQQL 139
+G +P+G IH+ L + N + M++ + + +I D A + + D ++
Sbjct: 45 NGFEPSGRIHIAQALITVMN-------TNNMIECGGQMIIYIADWFAKMNLKMNGDINKI 97
Query: 140 SKATRETAAIYLACGI--DNSK---ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 194
+ R ++ ACGI D ++ AS F+ S+ +++E M ++ + I + + Q
Sbjct: 98 RELGRYFIEVFKACGINLDGTRFIWASEFIASN-PSYIERMLDIAEFSTISRVKRCCQIM 156
Query: 195 EKSHKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNXX 251
++ + + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 157 GRNE---SDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRG-- 211
Query: 252 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 311
K+P I + +MSL+ KMSKS P Q I + D +
Sbjct: 212 ----------------LKIP---ISLSHHMLMSLSGPKKKMSKSDP--QGAIFMDDTEQE 250
Query: 312 IANKIKRCK-TDSSAGLEFDN 331
++ KI R TD + FDN
Sbjct: 251 VSEKISRAYCTDET----FDN 267
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 44/258 (17%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAI---TLPYDT 136
R G +P+G +H+ + N + E +F++ D A+ + +
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVN-------VNKCTAAGCEFVFWVADWFALMNDKVGGEL 94
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKE 195
+++ R ++ A G+D K S + +H + W + IG N + + K
Sbjct: 95 EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIK- 151
Query: 196 KSHKAGGENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXX 252
K G+ G A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 152 KCCTIMGKTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKL 211
Query: 253 XXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312
+P+I + + L G +KMSKS P S I + D ++ +
Sbjct: 212 -------------------KPVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDV 249
Query: 313 ANKIK-----RCKTDSSA 325
A KI+ R K +SA
Sbjct: 250 ARKIRQAYCPRVKQSASA 267
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT 136
+K + G +P+G IHLG+YL IK I LQ ++ + + DLHA + +
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIIILADLHAYLNQKGEL 79
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQF 193
++ K ++ A G+ KA S + + ++ L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMEL 136
Query: 194 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
+ EN VA + YP++ + I D G +Q++ L REL
Sbjct: 137 IARED----ENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT 136
+K + G +P+G IHLG+YL IK I LQ ++ + + DLHA + +
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGEL 79
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQF 193
++ K ++ A G+ KA S + + ++ L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMEL 136
Query: 194 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 244
+ EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 137 IARE----DENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT 136
+K + G +P+G IHLG+YL IK I LQ ++ + + DLHA + +
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGEL 79
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQF 193
++ K ++ A G+ KA S + + ++ L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMEL 136
Query: 194 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
+ EN VA + YP++ + D V G +Q++ L REL
Sbjct: 137 IARE----DENPKVAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 103/252 (40%), Gaps = 42/252 (16%)
Query: 77 VKKRIV--SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA---IT 131
+K++++ G +P+G +H+ G +K+ I + + N +F+I D A
Sbjct: 53 LKRKLICYDGFEPSGRMHIAQ--GLLKSIIV-----NKLTSNGCTFIFWIADWFAHLNNK 105
Query: 132 LPYDTQQLSKATRETAAIYLACGIDNSK-----ASVFVQSHVRAHVELMWLLSSATPIGW 186
+ D +++ K ++ +CG++ AS + + L+ +S + I
Sbjct: 106 MSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINR 165
Query: 187 LNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 246
+ + ++ +S G EN +L YP + +DI D +G DQ++ L RE +
Sbjct: 166 MKRCLKIMGRSE--GEENYCSQIL-YPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCD 222
Query: 247 RVNXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306
P+I G + L +G KMSKS + S I +
Sbjct: 223 IKKIKKK-------------------PVILSHGM-LPGLLEGQEKMSKS--DENSAIFMD 260
Query: 307 DPKDVIANKIKR 318
D + + KIK+
Sbjct: 261 DSESDVNRKIKK 272
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQLSKA 142
G +P+G IHLG+YL IK I LQ ++ + + DLHA + + ++ K
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGELDEIRKI 85
Query: 143 TRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHK 199
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 86 GDYNKKVFEAMGL---KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARE-- 140
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
EN VA + YP++ + I D G +Q++ L REL
Sbjct: 141 --DENPKVAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT 136
+K + G +P+G IHLG+YL IK I LQ ++ + + DLHA + +
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGEL 79
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQF 193
++ K ++ A G+ KA S + + ++ L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL 136
Query: 194 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
+ EN VA + YP++ + D G +Q++ L REL
Sbjct: 137 IARED----ENPKVAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQLSKA 142
G +P+G IHLG+YL IK I LQ ++ + + DLHA + + ++ K
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIIVLADLHAYLNQKGELDEIRKI 85
Query: 143 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 201
++ A G+ KA S W+L + ++ K +
Sbjct: 86 GDYNKKVFEAMGL---KAKYVYGSE--------WMLDKDYTLNVYRLALKTTLKRARRSM 134
Query: 202 ------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
EN VA + YP++ + D G +Q++ L REL
Sbjct: 135 ELIAREDENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 39/246 (15%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT---LPYDT 136
R G +P+G H+ + N + E +F++ D A+ + +
Sbjct: 42 RCYDGFEPSGRXHIAQGIFKAVN-------VNKCTAAGCEFVFWVADWFALXNDKVGGEL 94
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKE 195
+++ R ++ A G D K S + +H + W IG N + + K
Sbjct: 95 EKIRIVGRYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTIARIK- 151
Query: 196 KSHKAGGENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXX 252
K G+ G A + YP+ DI ++D +G DQ++ L RE + +
Sbjct: 152 KCCTIXGKTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLAREYCDLIGRKL 211
Query: 253 XXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312
+P+I + + L G +K SKS P S I D ++ +
Sbjct: 212 -------------------KPVI-LSHHXLAGLKQGQAKXSKSDPD--SAIFXEDTEEDV 249
Query: 313 ANKIKR 318
A KI++
Sbjct: 250 ARKIRQ 255
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT 136
+K + G +P+G IHLG+YL IK I LQ ++ + + DL A + +
Sbjct: 28 EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLFAYLNQKGEL 79
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHV--RAHVELMWLLSSATPIGWLNKMIQFK 194
++ K ++ A G+ V+ S + + + ++ L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGL--KAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELI 137
Query: 195 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 244
+ EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 138 ARED----ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQLSKA 142
G +P+G IHLG+YL IK I LQ ++ + + DLHA + + ++ K
Sbjct: 33 GFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGELDEIRKI 84
Query: 143 TRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHK 199
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 85 GDYNKKVFEAMGL---KAKYVYGSPFQLDKDYTLNVYRLALKTTLKRARRSMELIARED- 140
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
EN VA + YP++ + D G +Q++ L REL
Sbjct: 141 ---ENPKVAEVIYPIMQVNTSHRLGVDVAVGGMEQRKIHMLAREL 182
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 81 IVSGVQPT-GSIHLGNYLGAIKNWIALQPF-CDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
I +G P+ G++HLG+ L I F C +++Q + + F L +L Y +
Sbjct: 94 IYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKF----LRNRSLSY--AE 147
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKE 195
+ TRE +ACG D K +F+ S ++ L+ PI L F
Sbjct: 148 VDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSN 207
Query: 196 KSHKAGGENVGVA 208
+ NVG A
Sbjct: 208 DA------NVGYA 214
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQLSKA 142
G +P+G IHLG+YL IK I LQ ++ + ++ DL A + + ++ K
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIIYLADLAAYLNQKGELDEIRKI 85
Query: 143 TRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHK 199
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 86 GDYNKKVFEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED- 141
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 ---ENPKVAEVIYPIMEVNGWHYSGVDVAVGGMEQRKIHMLAREL 183
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQLSKA 142
G +P+G IHLG+YL IK I LQ ++ + + DL A + + ++ K
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLAAYLNQKGELDEIRKI 85
Query: 143 TRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHK 199
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 86 GDYNKKVFEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED- 141
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 244
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 ---ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 62 VSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDL-MLQNSYET 120
V+ E +AS + +K I G +P+G H+G + K ++ D +L+ ++
Sbjct: 21 VTEEELKGLLASGARIKGYI--GYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHA 78
Query: 121 LFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLL-- 178
+I D L D + A R + A G+ + FV + A + W L
Sbjct: 79 --YIND----KLGGDMDLIRAAARIVRRVMEAAGVPVERVR-FVDAEELASDKDYWGLVI 131
Query: 179 --SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 236
+ + + + + +A V + L YP++ SDI D G DQ++
Sbjct: 132 RVAKRASLARVRRALTIM--GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189
Query: 237 HLELTRELAERVN 249
L R++AE++
Sbjct: 190 AHMLARDVAEKLG 202
>pdb|3LY7|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc
pdb|3LYA|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc In The
Presence Of K2recl6
Length = 372
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 328 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 365
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY9|A Chain A, Crystal Structure Of Mutant D471n Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 328 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 365
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY8|A Chain A, Crystal Structure Of Mutant D471e Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 328 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 365
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|1R5S|A Chain A, Connexin 43 Carboxyl Terminal Domain
Length = 132
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 30 GLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTG 89
G PSK C +P A NGC S PTAP++ S ++V+G +
Sbjct: 4 GSPSKDCGSP-------KYAYFNGC----------SSPTAPLSPMSPPGYKLVTGDRNNS 46
Query: 90 SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA--ITLPYDTQQLSK 141
S N + +NW + M Q I + HA P D Q K
Sbjct: 47 SCRNYNKQASEQNWANYSAEQNRMGQ----AGSTISNSHAQPFDFPDDNQNAKK 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,189,297
Number of Sequences: 62578
Number of extensions: 424033
Number of successful extensions: 1033
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 46
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)