BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014300
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=trpS PE=3 SV=1
Length = 330
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/344 (61%), Positives = 249/344 (72%), Gaps = 17/344 (4%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
++SGVQPTGS+HLGNYLGAI+NW+A Q YE F +VDLHAIT+P+D +L+
Sbjct: 1 MLSGVQPTGSLHLGNYLGAIRNWVAGQ--------AEYENYFCVVDLHAITVPHDPAELA 52
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
T AA+YLACGID + A++FVQSHV AH EL WLL+ TP+ WL MIQFKEK+ K
Sbjct: 53 ANTYTVAALYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ 112
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
G ENV LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+ +
Sbjct: 113 G-ENVAAGLLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ---- 167
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 320
I K+PEPLIP AGARVMSLTDG KMSKS PS+ SRINLLD D I KIKRCK
Sbjct: 168 ----PPILKLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCK 223
Query: 321 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH 380
TD GL FD+ +RPE NNLLS+YQ+++GKTK VA EC +M WG FKPLLTDA+I L
Sbjct: 224 TDPIRGLAFDDPDRPEANNLLSLYQVLTGKTKEAVAAECADMGWGQFKPLLTDAVIATLE 283
Query: 381 PIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 424
PIQ RY EIM+D +YL +L G +AA +A+ATL V A GF
Sbjct: 284 PIQQRYNEIMADPSYLKDLLKKGQEQAATVANATLERVKLAFGF 327
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=trpS PE=3 SV=1
Length = 335
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/347 (58%), Positives = 249/347 (71%), Gaps = 18/347 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
K+R++SGVQPTG++HLGNYLGAI+NW+ +Q + Y+ F +VDLHAIT+P++
Sbjct: 3 KQRVLSGVQPTGNLHLGNYLGAIRNWVEIQ--------DQYDNFFCVVDLHAITVPHNPA 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L+ T AA+YLACGID +++FVQSHV AH EL W L+ TP+ WL MIQFKEK+
Sbjct: 55 TLAADTYAIAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKA 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
K G ENVG LL YPVLMA+DILLYQ+D VPVGEDQKQHLELTR++ R N+ + K
Sbjct: 115 VKQG-ENVGAGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDK- 172
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
+ K+PEPLI GARVMSLTDG KMSKS PS+ SRINLLDP D IANKIK
Sbjct: 173 --------PVMKLPEPLIRKEGARVMSLTDGTRKMSKSDPSELSRINLLDPPDQIANKIK 224
Query: 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
RCKTD GL FD+ ERPECNNLL++Y L+SGK K EVA ECQ+M WG FKPL T+ I
Sbjct: 225 RCKTDPVKGLTFDDPERPECNNLLTLYMLLSGKKKEEVAAECQDMGWGQFKPLFTETAIN 284
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 424
L PIQ +Y+EI +D YL+ VL DG KA +A+ TL +V A+G+
Sbjct: 285 ALKPIQEKYQEITADKGYLESVLRDGREKAETVANQTLADVKAALGY 331
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT
9313) GN=trpS PE=3 SV=1
Length = 337
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/349 (54%), Positives = 248/349 (71%), Gaps = 18/349 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ +S++T +VDLHAIT+P+D +
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQ--------SSHDTYVCVVDLHAITVPHDPE 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
+L++ + TAA+YLACG+D S+FVQS V AH EL WLL+ TP+ WL +MIQFKEKS
Sbjct: 55 RLAEESLSTAALYLACGMDPDLCSIFVQSQVSAHSELCWLLNCVTPLNWLERMIQFKEKS 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRK 256
K G +NV V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A+ R+N +G +
Sbjct: 115 VKQG-DNVSVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE 173
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ KVP+PLI GARVMSL+DG SKMSKS P++ SRI LLDP ++I KI
Sbjct: 174 --------KPVLKVPDPLIIKEGARVMSLSDGRSKMSKSDPNEGSRITLLDPPELITKKI 225
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
KR KTD GL+F N +RPE +NLL IY ++SG+ + A+EC M WGTFKPLL DA +
Sbjct: 226 KRAKTDPQMGLQFGNPDRPEADNLLGIYAILSGRGRDAAAQECAEMGWGTFKPLLADATV 285
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
L PIQ RY+++M D L +VL G +A + A ATL V QA+GFL
Sbjct: 286 SALEPIQHRYQQLMGDRIELIRVLDQGRTRAEETAQATLQRVRQALGFL 334
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=trpS PE=3 SV=2
Length = 337
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/348 (56%), Positives = 244/348 (70%), Gaps = 17/348 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
K RI+SGVQPTG++HLGNYLGAI++W+ Q Y+ F +VDLHAIT+P++ Q
Sbjct: 3 KPRILSGVQPTGNLHLGNYLGAIRSWVEQQ--------QHYDNFFCVVDLHAITVPHNPQ 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L++ T AA+YLACGID +++FVQSHV AH EL WLL+ TP+ WL +MIQFKEK+
Sbjct: 55 TLAQDTLTIAALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKA 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
K G ENV V LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++ R+N
Sbjct: 115 VKQG-ENVSVGLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRIN-------- 165
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
K G + K+PEPLI GARVMSL DG KMSKS S+ SRINLLDP ++I K+K
Sbjct: 166 DKFGREDAPVLKLPEPLIRKEGARVMSLADGTKKMSKSDESELSRINLLDPPEMIKKKVK 225
Query: 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
+CKTD GL FD+ ERPEC+NLL++Y L+S +TK VA+EC M WG FKPLLT+ I
Sbjct: 226 KCKTDPQRGLWFDDPERPECHNLLTLYTLLSNQTKEAVAQECAEMGWGQFKPLLTETAIA 285
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
L PIQ +Y EI++D LD+++ G AKA+ A TL V A+GFL
Sbjct: 286 ALEPIQAKYAEILADRGELDRIIQAGNAKASQTAQQTLARVRDALGFL 333
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102)
GN=trpS PE=3 SV=1
Length = 337
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 250/350 (71%), Gaps = 18/350 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ ++++T +VDLHAIT+P+D
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQ--------DTHDTFVCVVDLHAITVPHDPA 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
+L+ T TAA+YLACG+D + S+F+QS V AH EL WLL+ TP+ WL +MIQFKEK+
Sbjct: 55 RLADDTLNTAALYLACGMDPQRCSIFIQSQVAAHSELCWLLNCVTPLNWLERMIQFKEKA 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRK 256
K G +NV V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A+ R+N +G +
Sbjct: 115 VKQG-DNVSVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE 173
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ KVP+PLI GARVMSLTDG SKMSKS P++ SRI LLDP ++I KI
Sbjct: 174 --------RPVLKVPKPLILKEGARVMSLTDGRSKMSKSDPNEGSRITLLDPPELITKKI 225
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
KR KTD GLEF N +RPE +NLL +Y ++SGK + A+EC +M WG FKPLL DA +
Sbjct: 226 KRAKTDPKRGLEFSNPDRPETDNLLGLYAILSGKGREAAADECADMGWGQFKPLLADAAV 285
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 426
L PIQ R++E+M+D LD+VLA G +A +A+A+L V A+GF +
Sbjct: 286 AALEPIQARHKELMADRVELDRVLAKGRDQAESVANASLERVRDALGFAK 335
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=trpS PE=3 SV=1
Length = 339
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/352 (53%), Positives = 247/352 (70%), Gaps = 18/352 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
KKR++SGVQPTG+IH+GN+LGAI+NW++LQ N Y+T +VDLHAIT+P+D
Sbjct: 2 TKKRVLSGVQPTGAIHIGNWLGAIRNWVSLQ--------NEYDTYVCVVDLHAITVPHDP 53
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
QQL + T TAA+Y+ACG+D K S+FVQSH+ AH EL WLL+ TP+ W+ +MIQFKEK
Sbjct: 54 QQLKENTLRTAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEK 113
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGR 255
+ K G +NV + LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A+ RVN
Sbjct: 114 AIKQG-DNVSIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVN------ 166
Query: 256 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 315
+ +I K+P+PLI G ++MSL DG KMSKS P++ SRI LLD ++I K
Sbjct: 167 --SRFNKESKSILKIPKPLIMKEGGKIMSLIDGNMKMSKSDPNENSRIALLDSPEIIKKK 224
Query: 316 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDAL 375
IKR KTDS GLEFDN +RPE NNLL IY ++S + + V +E N+ WG FKP+LTDA+
Sbjct: 225 IKRAKTDSFLGLEFDNNQRPEANNLLGIYSMVSNQNREAVQKEFSNIGWGKFKPILTDAI 284
Query: 376 IEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
IE L+PIQ +Y ++ D L+ +L G KA I++ TL V A+GFL +
Sbjct: 285 IESLNPIQQKYYSLIKDKTELNNILNKGYIKANTISNQTLKRVRNALGFLDK 336
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=trpS PE=3 SV=1
Length = 336
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 238/353 (67%), Gaps = 22/353 (6%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL 132
S+ KRI+SG QPTG +HLGNYLGA++NW++ Q Y++ F +VDLHA+T+
Sbjct: 3 DDSTAPKRILSGAQPTGQLHLGNYLGAVRNWVSEQ--------RQYDSYFCVVDLHALTV 54
Query: 133 PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ 192
P + +L ATR TAA+YLACGID +++VFVQSHV AH EL WL + TPI WL +MIQ
Sbjct: 55 PQEAAELRAATRRTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQ 114
Query: 193 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 252
FKEK+ K GE VG+ L YPVL A+DILLY+ VPVGEDQ+QHLELTR++A R N Y
Sbjct: 115 FKEKAIKL-GEEVGIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRY 173
Query: 253 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312
G +VPE LI GARVMSL DG SKMSKS PSD SR+NLLD + +
Sbjct: 174 ------------GESLRVPEMLIRKEGARVMSLQDGTSKMSKSDPSDLSRLNLLDAPEKL 221
Query: 313 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 372
+KIKR K+D+ GL+FD RPEC NLL+IYQL+SG++ V + +G FKP+L
Sbjct: 222 RDKIKRAKSDAVMGLKFDP-ARPECTNLLTIYQLLSGESPEAVEARFADAGFGRFKPILA 280
Query: 373 DALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
D +IE+L PI+ RY+ I +S YL+ +L +GA +A+ +A TL + MG L
Sbjct: 281 DLVIEYLRPIRERYDAIAGESGYLEGILREGALRASKVAGLTLERIRDRMGLL 333
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=trpS PE=3 SV=1
Length = 338
Score = 360 bits (924), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/350 (50%), Positives = 237/350 (67%), Gaps = 19/350 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
KKRI+SGVQPTG +H+GN+LGAI NW+ LQ +ET +VDLHAIT YDT+
Sbjct: 4 KKRILSGVQPTGDLHIGNWLGAINNWVELQ--------EKHETFLCVVDLHAITTEYDTK 55
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
QLSK T TAA+Y+ACGI+ S+FVQS + AH EL W+L+ TPI W+ +MIQFKEKS
Sbjct: 56 QLSKNTLSTAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKS 115
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRK 256
+ G NV + L YP+LMA+DILLY +D+VPVGEDQKQHLEL +++A+ R+N +G +
Sbjct: 116 IQQGN-NVSIGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEE 174
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
I K+P+P+I G+++MSL DG KMSKS ++ SRINLLD ++I KI
Sbjct: 175 ---------NILKIPQPIIMKKGSKIMSLNDGSKKMSKSDINEGSRINLLDTPEIITKKI 225
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
KR K+DS G+EF+N ERPE NLL IY L+SGK E+ + WGTFK + T+ +I
Sbjct: 226 KRAKSDSYMGMEFNNPERPESRNLLMIYSLLSGKEVSELENDLSQTGWGTFKKIFTEQII 285
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 426
E L PIQ RY+ +++D L+K+L G KA +A+ TL+ V +GF
Sbjct: 286 ESLKPIQERYQVLINDPHELNKILIQGKEKAEVVANKTLSRVKSELGFFE 335
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=trpS PE=3 SV=1
Length = 330
Score = 315 bits (806), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 165/349 (47%), Positives = 222/349 (63%), Gaps = 20/349 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK ++SGVQ TGS+HLGNYLGAIKNW+ +Q Y FF+ DLHAIT+
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGAIKNWVKMQE--------EYNCFFFLADLHAITVDIKP 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L+ + E A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K
Sbjct: 53 SELNNSIMEVLAVYLAAGLNPDKVTIFAQSMVKEHTELAWLLNCVTPLGWLKRMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
+ + E + L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK
Sbjct: 113 A-GSDQEKACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RK 166
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ K I KVPE LI G R+MSL DGL KMSKS SD SRINL D D+I KI
Sbjct: 167 FNK------EILKVPEVLISETGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKI 220
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K+ KTD + + +D RPE +NLL IY +S ++ ++ QN + FK L + +I
Sbjct: 221 KKAKTDHLSFVSYDQETRPEISNLLDIYSSLSEESLEQIIGNYQNQGFAKFKEDLAEIII 280
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+L PI+ +Y E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 281 TNLQPIRDKYLELMNDKEYLLKILHKGAEKARIRASETVNEVKEQFGFV 329
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=trpS PE=3 SV=1
Length = 330
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 224/349 (64%), Gaps = 20/349 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK ++SGVQ TG++HLGNYLG+I+NWI +Q Y FF+ DLHAIT+ T
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIRNWIKMQE--------EYNCFFFLADLHAITIDIKT 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L+ A E AIYLA G++ K ++F QS V+ HVEL WLL+ TP+GWL +M QFK+K
Sbjct: 53 SELNDAIMEVLAIYLAAGLNPDKVTIFAQSMVKEHVELSWLLNCVTPLGWLKRMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
+ A + + L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R+
Sbjct: 113 AGSAQCK-ACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RR 166
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ K I KVP+ LI G R+MSL +GL KMSKS SD SRINL D D+I KI
Sbjct: 167 FDK------EILKVPDILISETGTRIMSLRNGLKKMSKSDISDFSRINLKDSNDLIHQKI 220
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K+ KTD + + ++ RPE +NLL IY+ S ++ ++ + QN + FK L + +I
Sbjct: 221 KKAKTDHLSFISYNKKTRPEISNLLDIYKSFSKESIEKIIDNYQNQGFAKFKEDLAEIII 280
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+L PI+ + E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 281 TNLQPIRNKCLELMNDKEYLLKILHKGAQKARIRASETVNEVKKQFGFI 329
>sp|Q68WR2|SYW_RICTY Tryptophan--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=trpS PE=3 SV=1
Length = 330
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 223/351 (63%), Gaps = 24/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK ++SGVQ TG++HLGNYLG+IKNW+ +Q Y FF+ DLHAIT+ T
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIKNWVKMQE--------EYNCFFFLADLHAITIDIKT 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L+ + E AIYLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K
Sbjct: 53 SELNNSIMEVLAIYLAAGLNPDKVTIFAQSMVKEHAELSWLLNCVTPLGWLKRMTQFKDK 112
Query: 197 SHKAGGENVG--VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 254
AG + + L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N
Sbjct: 113 ---AGSDQCKACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN----- 164
Query: 255 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 314
R++ K I KVP+ LI G R+MSL +GL KMSKS +D SRINL D D+I
Sbjct: 165 RRFDK------EILKVPDILISETGTRIMSLRNGLKKMSKSDIADFSRINLKDSNDLIYQ 218
Query: 315 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDA 374
KIK+ KTD + + +D RPE +NLL IY+ +S ++ ++ QN + FK L +
Sbjct: 219 KIKKAKTDHLSFISYDKKTRPEISNLLDIYKSLSKESMEKIINNYQNQGFAKFKEDLAEI 278
Query: 375 LIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+I +L PI+ + E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 279 IITNLQPIRDKCLELMNDKEYLLKILHKGAEKAKIRASETVNEVKKQFGFI 329
>sp|Q4UL98|SYW_RICFE Tryptophan--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=trpS PE=3 SV=1
Length = 330
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 222/349 (63%), Gaps = 20/349 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q Y FF+ DLHAIT+
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQE--------EYNCFFFLADLHAITVDIKP 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L+ + A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K
Sbjct: 53 SELNNSIMGVLAVYLAAGLNPDKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
+ + E + L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N R+
Sbjct: 113 A-GSDQEKACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RR 166
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ K I KVPE LI G R+MSL DGL KMSKS SD SRINL D D+I KI
Sbjct: 167 FDK------EILKVPEVLISETGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKI 220
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K+ KTD + + +D RPE +NLL IY+ +S ++ ++ QN + FK L + +I
Sbjct: 221 KKAKTDHLSFVSYDKETRPEISNLLDIYRSLSEESLEKIINNYQNQGFSKFKEDLAEIII 280
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+L PI+ +Y E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 281 TNLQPIRDKYLELMNDKEYLLKILHKGAEKARIRASETVNEVKEQFGFV 329
>sp|Q8R9X8|SYW_THETN Tryptophan--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpS PE=3
SV=1
Length = 327
Score = 302 bits (773), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 217/349 (62%), Gaps = 24/349 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
KR+ SGVQP+G IH+GNYLGA++ ++ALQ + Y+ F +VDLHA+T+P D +
Sbjct: 2 KRVFSGVQPSGDIHIGNYLGAMRQFVALQ--------DDYDCFFCVVDLHALTVPQDPVE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L K T E AA+Y+A G+D K ++FVQSHV AH EL WLL T G L++M QFKEKS
Sbjct: 54 LKKNTIELAALYMAIGLDPKKVTLFVQSHVSAHAELAWLLQCITYFGELSRMTQFKEKSK 113
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 258
G E+V V L TYP LMA+DILLY++ +VPVGEDQKQHLELTR++A+R N
Sbjct: 114 --GKESVSVGLFTYPDLMAADILLYKTHYVPVGEDQKQHLELTRDVAQRFN--------- 162
Query: 259 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
R G F +PEP+I GAR+MSLT+ KMSKS +R+NLLD D I KI +
Sbjct: 163 ---NRFGETFVIPEPMILKFGARIMSLTNPTKKMSKSDADPNNRVNLLDDPDTIYRKIMK 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + + D ++P +NLL+IY L +G EV + + +GT K L + +I+
Sbjct: 220 AVTDSESEIRLDWEKKPGISNLLTIYSLFTGMEVDEVVNKFKGQGYGTLKKELAEVVIDK 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L IQ Y +I + +VL +GA +A +A TL V + MG + R
Sbjct: 280 LSVIQKNYRDISEEEVL--RVLKEGAERAEAVAVETLKEVKEKMGLILR 326
>sp|Q7MAE0|SYW_WOLSU Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=trpS PE=3 SV=1
Length = 328
Score = 301 bits (772), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 215/349 (61%), Gaps = 22/349 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KKR+ SG+QPTG+IHLGNYLGA+KNW+ Q + ++ +F IV+ HAIT+ D
Sbjct: 2 IKKRVFSGIQPTGNIHLGNYLGAVKNWVDSQ--------DEFDNIFCIVNSHAITIKQDP 53
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
L T E AA+ LACGID K+ +F+QS V H L W+L P+G +++M QFK+K
Sbjct: 54 ALLRAKTYELAAVLLACGIDMKKSKLFIQSEVDEHAALAWILDCNIPMGDMSRMTQFKDK 113
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S K +N+ + L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++AER N Y
Sbjct: 114 SQK-NPKNINIGLFNYPALMAADILLYQTDFVPVGEDQKQHLELTRDVAERFNRDY---- 168
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
G FK+PEP+IP GAR+M L D KMSKS I LLD D I K
Sbjct: 169 --------GETFKIPEPMIPKMGARIMGLDDPTKKMSKSEGKPNHGIALLDTPDEILKKF 220
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K+ TDS + F N E+ NLL+IYQ+ +G ++ + E + +G FK + +A+I
Sbjct: 221 KKATTDSENLVRF-NPEQIGIFNLLTIYQIFTGYSQEVIEAEFEGKGYGIFKVAVAEAVI 279
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
E L PIQ RY ++ + YL++VL+ GA++ IA T V + +G +
Sbjct: 280 EGLKPIQERYAKLTKEQGYLEEVLSHGASEVRKIAQKTYKEVKERVGLI 328
>sp|Q9AC05|SYW_CAUCR Tryptophan--tRNA ligase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=trpS PE=3 SV=1
Length = 344
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/347 (46%), Positives = 217/347 (62%), Gaps = 21/347 (6%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQL 139
R++SGVQP+G++HLGNYLGA+ + LQ+ +T F+ DLHAIT+ D L
Sbjct: 14 RVLSGVQPSGALHLGNYLGALVKFT--------RLQHEIDTFIFVADLHAITVWQDPAAL 65
Query: 140 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 199
++ TRE AA Y+A G+D KA++F QS VR H EL W+ + +GWL++M QFKEKS K
Sbjct: 66 AQQTREIAAAYIASGLDPDKATIFPQSAVREHAELSWIFNCVARLGWLDRMTQFKEKSGK 125
Query: 200 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 259
E V L TYPVL A+DIL+Y++ VPVGEDQKQHLELTR++A++ N+ +
Sbjct: 126 -HKERSSVGLYTYPVLQAADILIYKATHVPVGEDQKQHLELTRDIAQKFNHDFNAP---- 180
Query: 260 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 319
F +P+PLI GARVMSL DG +KMSKS PSD SRINL D D IA K+K+
Sbjct: 181 ------GFFPLPDPLIQGPGARVMSLRDGSAKMSKSDPSDYSRINLTDTADDIAAKVKKA 234
Query: 320 KTDSSAGLE-FDNL-ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
+TD E + L R E +NL+ I+ ++GKTK EV + +GTFKP L + +E
Sbjct: 235 RTDPEPLPETIEELATRAEADNLVGIFAALAGKTKAEVLADYAGKGFGTFKPALAELAVE 294
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 424
L P+ R ++ D A LD +LA GA KA + A TL V + +GF
Sbjct: 295 SLAPVGERMRGLLGDPAVLDAILAKGAEKAREAAAPTLAEVKKLVGF 341
>sp|Q9K8Y2|SYW_BACHD Tryptophan--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=trpS PE=3
SV=1
Length = 330
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 217/351 (61%), Gaps = 23/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK + SG+QP+G++ LGNYLGA+K++++LQ Y F IVD HAIT+P D
Sbjct: 1 MKKTVFSGIQPSGTLTLGNYLGAMKHFVSLQ--------EDYNCYFCIVDQHAITVPQDR 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L + R AA+YLA GID SKA++F+QS V AH +L W++ + IG L +M QFK+K
Sbjct: 53 LKLRENIRSLAALYLAVGIDPSKATLFIQSEVPAHAQLGWMMQCVSYIGELERMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S G E V +LLTYP LMA+DILLY ++ VPVGEDQKQHLELTR+LAER N Y
Sbjct: 113 SD--GKEAVSASLLTYPPLMAADILLYHTNIVPVGEDQKQHLELTRDLAERFNKKYND-- 168
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
IF +PE IP GAR+MSL D KMSKS P+ +S I++LD + I KI
Sbjct: 169 ----------IFTIPEVQIPKVGARIMSLNDPSKKMSKSNPNPKSYISMLDDEKTITKKI 218
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K TDS ++FD +P +NLLSIY L G + EV + +G FK L ++
Sbjct: 219 KSAVTDSDGIVKFDKENKPAISNLLSIYSLCKGASIEEVEAQFVGKGYGEFKESLAQVVV 278
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
+ L PIQ RYE+++ S LD +L GA KA +A TL +AMG R+
Sbjct: 279 DTLKPIQERYEQLIQ-SEELDHILDQGADKANRVARKTLEKAERAMGLGRK 328
>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=trpS PE=3 SV=1
Length = 332
Score = 298 bits (762), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 210/353 (59%), Gaps = 22/353 (6%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL 132
S +S KKRI SG+QPTG+IHLGNYLGA+++W+ Q YE +F +V+ HAIT+
Sbjct: 2 SHTSSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQ--------EQYENIFCVVNSHAITI 53
Query: 133 PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ 192
D Q+L T E A I LACGID K+ +F+QS + H L W+L P+G +++M Q
Sbjct: 54 RQDPQELQNKTYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQ 113
Query: 193 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 252
FK+KS+K +N+ V L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++A R N Y
Sbjct: 114 FKDKSNK-NPKNINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDY 172
Query: 253 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312
G F +PEP+IP GARVM L + SKMSKSA + I LLD DVI
Sbjct: 173 ------------GECFNIPEPMIPQVGARVMGLDNPQSKMSKSAQGENHAIFLLDSPDVI 220
Query: 313 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 372
K K+ TDS + + FD R NLL IY++ + K++ + E + +G K L
Sbjct: 221 TRKCKKAVTDSQSNIVFDE-SRAGLYNLLCIYEIFTQKSRKSIEAEFEGKGYGHLKMALA 279
Query: 373 DALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+ +IE L PIQ Y +I D Y+ VL A IA T N + +G +
Sbjct: 280 EVIIESLRPIQQSYAKISQDKTYIQSVLTKSADSIRPIAKNTYENAKRLVGLV 332
>sp|P00953|SYW_GEOSE Tryptophan--tRNA ligase OS=Geobacillus stearothermophilus GN=trpS
PE=1 SV=1
Length = 328
Score = 292 bits (748), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 210/349 (60%), Gaps = 23/349 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS
Sbjct: 54 LRQNIRRLAAKYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS- 112
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 258
AG E V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N YG
Sbjct: 113 -AGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG----- 166
Query: 259 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 167 -------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L PIQ RY M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 280 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>sp|P56396|SYW_HELPY Tryptophan--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=trpS PE=3 SV=2
Length = 326
Score = 292 bits (748), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/348 (46%), Positives = 208/348 (59%), Gaps = 24/348 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
KKR+ SG+QPTG IHLGNYLGAIK+W+ +Q + YE LF +V+ HAITLP D
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVEMQ--------DEYENLFCVVNSHAITLPIDPA 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L + E + LACGID ++ +F+QS V H L WLL+ +G + +M QFK+KS
Sbjct: 55 FLKSQSYELVKLLLACGIDPKQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKS 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
K ++V V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 115 LK-NPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAEKFNRDFGN--- 170
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
FKVPEPLI GARVM L D KMSKS I LLD D+I KIK
Sbjct: 171 ---------CFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIK 221
Query: 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
+ TDS + FD +R NLL+IY L+S ++ + E +N +G FK L + +I+
Sbjct: 222 KAATDSMGVIAFDE-KREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVMIQ 280
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
L PIQ RY+EI D + +L GA KA +A AT + MG +
Sbjct: 281 ALKPIQERYKEISDDE--VKAILNGGAEKARPLARATYQKAKELMGLI 326
>sp|P0A2P2|SYW_SALTY Tryptophan--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=trpS PE=3 SV=1
Length = 334
Score = 291 bits (746), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/350 (45%), Positives = 221/350 (63%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D QQL
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDAQQLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG
Sbjct: 118 -AENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------ 170
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 171 ------IFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D E+ +NLL I ++G++ E+ ++ + +G K + +A+
Sbjct: 224 VTDSDEPPVVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L KV+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLSELQERYHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAK 333
>sp|P0A2P3|SYW_SALTI Tryptophan--tRNA ligase OS=Salmonella typhi GN=trpS PE=3 SV=1
Length = 334
Score = 291 bits (746), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/350 (45%), Positives = 221/350 (63%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D QQL
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDAQQLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG
Sbjct: 118 -AENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------ 170
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 171 ------IFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D E+ +NLL I ++G++ E+ ++ + +G K + +A+
Sbjct: 224 VTDSDEPPVVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L KV+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLSELQERYHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAK 333
>sp|P57956|SYW_PASMU Tryptophan--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=trpS PE=3 SV=1
Length = 333
Score = 291 bits (746), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 218/350 (62%), Gaps = 23/350 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
K ++SGVQP+G + +GNYLGA++ W+ +Q + YE LF IVDLHAIT+ D +
Sbjct: 3 KPVVLSGVQPSGELTIGNYLGALRQWVKMQ--------DDYECLFCIVDLHAITVRQDPE 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L KAT + A+YLACGID K+++F+QSHV H +L W+L+ T G + +M QFK+KS
Sbjct: 55 SLRKATLDVLALYLACGIDPEKSTIFIQSHVPEHTQLAWVLNCYTYFGEMGRMTQFKDKS 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
+ EN+ V L TYPVLMA+DILLYQ++ VPVGEDQKQHLE+TR++A R N LYG
Sbjct: 115 ARH-AENINVGLFTYPVLMAADILLYQANQVPVGEDQKQHLEITRDIANRFNALYGD--- 170
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
+F VPEP IP AGARVMSL + KMSKS + + I LL+ +A KIK
Sbjct: 171 ---------LFAVPEPFIPKAGARVMSLLEPEKKMSKSDENRNNVIGLLEDPKAVAKKIK 221
Query: 318 RCKTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDAL 375
R TDS + +D + +NLL I ++GK+ E+ E + +G K + D +
Sbjct: 222 RAVTDSDEPPVVRYDVQNKAGVSNLLDILSGVTGKSIAELETEFEGKMYGHLKGTVADEV 281
Query: 376 IEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
L +Q R+ ++ A L+ + +GA KA + A ATL+ VYQA+GF+
Sbjct: 282 SAMLTTLQERFHHFRNNEALLNDIAREGAQKARERAKATLDAVYQAVGFV 331
>sp|P67587|SYW_BRUSU Tryptophan--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=trpS PE=3 SV=1
Length = 355
Score = 291 bits (745), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 221/363 (60%), Gaps = 21/363 (5%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY 134
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q + E ++ +VD+HA+T+
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQ--------KTEECIYCVVDMHALTVSP 53
Query: 135 DTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 194
D +L ++TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK
Sbjct: 54 DPVELMQSTREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFK 113
Query: 195 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 254
+K+ K EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y
Sbjct: 114 DKAGK-DRENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSD 172
Query: 255 RKWK-------KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306
R K+G F + EP+I R+MSL DG KMSKS PSD SRINL+
Sbjct: 173 RIASLGVGVDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKMSKSDPSDLSRINLI 232
Query: 307 DPKDVIANKIKRCKTDSSAGL--EFDNLE-RPECNNLLSIYQLISGKTKGEVAEECQNMN 363
D +D I KI++ KTDS GL E D LE RPE +NL+ IY +S TK +V +E
Sbjct: 233 DDEDTITKKIRKAKTDSD-GLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQ 291
Query: 364 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 423
+ K L D + L PI +++D A++D VL DG +A IA+ T+ +V +G
Sbjct: 292 FSDLKASLADLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVRDIVG 351
Query: 424 FLR 426
+L+
Sbjct: 352 WLQ 354
>sp|P67586|SYW_BRUME Tryptophan--tRNA ligase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=trpS PE=3 SV=1
Length = 355
Score = 291 bits (745), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 221/363 (60%), Gaps = 21/363 (5%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY 134
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q + E ++ +VD+HA+T+
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQ--------KTEECIYCVVDMHALTVSP 53
Query: 135 DTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 194
D +L ++TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK
Sbjct: 54 DPVELMQSTREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFK 113
Query: 195 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 254
+K+ K EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y
Sbjct: 114 DKAGK-DRENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSD 172
Query: 255 RKWK-------KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306
R K+G F + EP+I R+MSL DG KMSKS PSD SRINL+
Sbjct: 173 RIASLGVGVDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKMSKSDPSDLSRINLI 232
Query: 307 DPKDVIANKIKRCKTDSSAGL--EFDNLE-RPECNNLLSIYQLISGKTKGEVAEECQNMN 363
D +D I KI++ KTDS GL E D LE RPE +NL+ IY +S TK +V +E
Sbjct: 233 DDEDTITKKIRKAKTDSD-GLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQ 291
Query: 364 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 423
+ K L D + L PI +++D A++D VL DG +A IA+ T+ +V +G
Sbjct: 292 FSDLKASLADLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVRDIVG 351
Query: 424 FLR 426
+L+
Sbjct: 352 WLQ 354
>sp|Q81TS6|SYW_BACAN Tryptophan--tRNA ligase OS=Bacillus anthracis GN=trpS PE=3 SV=1
Length = 329
Score = 291 bits (745), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 215/347 (61%), Gaps = 23/347 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
I SG+QP+G+I LGNYLGA+K + LQ N ++ F IV+ HAIT+P D QL
Sbjct: 4 IFSGIQPSGTITLGNYLGAMKQFTELQ--------NEHDCYFCIVNQHAITVPQDPVQLR 55
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
K R AA+Y+ACGID KA++FVQS V AH +L W++ S +G L +M Q+K+K+ +
Sbjct: 56 KNIRSLAALYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKA--S 113
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
G ++V LLTYP LMA+DILLY ++ VPVG+DQKQH+ELTR+LAER N
Sbjct: 114 GRDSVPAGLLTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFN----------- 162
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 320
R +F +PE IP GARVMSLT+ KMSKS P+ +S I++LD I KIK
Sbjct: 163 -KRFREVFTIPEIRIPKVGARVMSLTEPTKKMSKSDPNPKSMISMLDEPKTIEKKIKSAV 221
Query: 321 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH 380
TDS ++FD +P +NLL+IY SGKT E+ + +G FK L ++E +
Sbjct: 222 TDSEGIVKFDKENKPGISNLLTIYSSFSGKTVEEIEAMYEGKGYGDFKGDLAQVVVEAIR 281
Query: 381 PIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
PIQ +Y E++ +S LD++L GA KA +A L V AMG R+
Sbjct: 282 PIQDKYNELI-NSPELDEILDKGAEKANRVAFKQLRKVENAMGLSRK 327
>sp|Q891C7|SYW_CLOTE Tryptophan--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=trpS PE=3 SV=1
Length = 338
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 215/348 (61%), Gaps = 22/348 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
KK I SG+QP+G++ +GNY GA+KNW+ LQ + Y + IVDLHAIT+ Q
Sbjct: 10 KKTIFSGIQPSGNLTIGNYFGALKNWVKLQ--------DEYNCFYCIVDLHAITVRQVPQ 61
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
+L K T E A+Y+A G+D K ++F+QSHV AH E WLL+ T +G LN+M QFK+KS
Sbjct: 62 ELRKRTLEVLAVYIASGLDPEKNTLFIQSHVPAHTEAAWLLNCFTYLGELNRMTQFKDKS 121
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
A GE++ LL YPVLMA+DILLY +D VPVG DQKQHLELTR++A R N LY
Sbjct: 122 QNA-GESISAGLLNYPVLMAADILLYNADLVPVGNDQKQHLELTRDIATRFNNLY----- 175
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
FKVPEP I GAR+M L + KMSKSA + I ++DP ++I NKI
Sbjct: 176 -------SPTFKVPEPYIGKTGARIMDLQEPKKKMSKSAENKNGYILIMDPPNIIQNKIN 228
Query: 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
R TD+ + + + E+P NL++I +GK + +E + + FK + +A+I
Sbjct: 229 RAVTDNEGIVRYSD-EQPGVKNLMNILSTATGKNVESIEKEYAGLGYSKFKKDVAEAIIA 287
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+ P+Q + + D +YL+KV +GA KA+ +A+ TL+ + + +GF+
Sbjct: 288 EVEPLQKEVKRYLEDKSYLEKVYKEGAQKASYVANKTLSKMKRKIGFV 335
>sp|Q9EYY6|SYW_ENTAE Tryptophan--tRNA ligase OS=Enterobacter aerogenes GN=trpS PE=3 SV=1
Length = 334
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/350 (45%), Positives = 221/350 (63%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D QQL
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDPQQLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPQKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N +YG
Sbjct: 118 -AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIAQRFNAIYGD------ 170
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 171 ------IFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D E+ +NLL I ++GKT E+ + + +G K + +A+
Sbjct: 224 VTDSDEPPVVRYDLKEKAGVSNLLDILSAVTGKTIPELEQHFEGKMYGHLKGEVAEAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L++V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLIDLQERYHRFRNDEAFLNQVMKDGAEKASARASQTLKAVYEAIGFVAK 333
>sp|Q9ZJX4|SYW_HELPJ Tryptophan--tRNA ligase OS=Helicobacter pylori (strain J99) GN=trpS
PE=3 SV=1
Length = 326
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 206/348 (59%), Gaps = 24/348 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
KKR+ SG+QPTG IHLGNYLGAIK+W+ LQ + YE LF IV+ HAITLP +
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVELQ--------DEYENLFCIVNSHAITLPIEPI 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L T E + LACGI ++ +F+QS V H L WLL +G + +M QFK+KS
Sbjct: 55 FLKSQTYELVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKS 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
K ++V V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 115 LK-NPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGN--- 170
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
FKVPEPLI GARVM L D KMSKS I LLD DVI KIK
Sbjct: 171 ---------CFKVPEPLIAKVGARVMGLDDPKVKMSKSHKGANHAIFLLDEPDVIVKKIK 221
Query: 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
+ TDS + FD R NLL+IY L+S ++ ++ E +N +G FK L + +I+
Sbjct: 222 KAATDSMGVIAFDET-REGVFNLLNIYMLLSDESPEKIEERFRNKGYGDFKKELAEVVIQ 280
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
L PIQ RY+EI D + VL GA KA +A AT + MG +
Sbjct: 281 SLKPIQERYQEISDDE--VKAVLNCGAEKARPLARATYQKAKELMGLI 326
>sp|Q8Y577|SYW_LISMO Tryptophan--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=trpS PE=3 SV=1
Length = 331
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 213/351 (60%), Gaps = 23/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQF--------GQFQDEYECFYCIVDEHAITVPQDR 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L + TR AA+YLA G+D K+++F+QS V AH + W+L IG L +M QFK+K
Sbjct: 53 LKLREQTRSLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S AG V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N
Sbjct: 113 S--AGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------- 163
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KI
Sbjct: 164 -----KKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKI 218
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K TDSS +E++ E+P +NLL+IY +I+G+T + E+ +G FK L + ++
Sbjct: 219 KSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVV 278
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L PIQ RY + S LD +L GA KAA +A+ TL + +G R+
Sbjct: 279 SELEPIQERYYAYLK-SEELDTILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q1RIE3|SYW_RICBR Tryptophan--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=trpS PE=3 SV=1
Length = 328
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 222/349 (63%), Gaps = 22/349 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q Y FF+ DLH+IT+
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQ--------EEYNCFFFLADLHSITVDIAP 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L ++ ET AIYLA G+D +K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K
Sbjct: 53 SELKRSVIETLAIYLAAGLDPNKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
+ K E + L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK
Sbjct: 113 AGK-DQEKACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RK 166
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ K I KVPE LI +G R+MSL DG KMSKS SD SRINL D D+I KI
Sbjct: 167 FNK------EILKVPEVLIGGSGTRIMSLRDGSKKMSKSDSSDFSRINLRDDNDLIHQKI 220
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K+ KTD + + +D RPE +NLL IY +S + + + + + FK L + +I
Sbjct: 221 KKAKTDHLSFVSYDKEARPEISNLLDIYTTLSEEKLENIIQNYE--GFAKFKEDLAEIII 278
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+L P++ +Y E+M+D YL K+L GA KA A T+N + + GF+
Sbjct: 279 TNLQPMRDKYLELMNDQEYLLKILHQGAEKARVRASETVNELKEQFGFV 327
>sp|P67588|SYW_ECOL6 Tryptophan--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=trpS PE=3 SV=1
Length = 334
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 220/350 (62%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D Q+L
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDAQKLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG
Sbjct: 118 -AENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------ 170
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 171 ------IFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D + +NLL I ++G++ E+ ++ + +G K + DA+
Sbjct: 224 VTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLTELQERYHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|P67589|SYW_ECO57 Tryptophan--tRNA ligase OS=Escherichia coli O157:H7 GN=trpS PE=3
SV=1
Length = 334
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 220/350 (62%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D Q+L
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDAQKLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG
Sbjct: 118 -AENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------ 170
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 171 ------IFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D + +NLL I ++G++ E+ ++ + +G K + DA+
Sbjct: 224 VTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLTELQERYHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|Q71XG7|SYW_LISMF Tryptophan--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=trpS PE=3 SV=1
Length = 331
Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 212/351 (60%), Gaps = 23/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQF--------GQFQDEYECFYCIVDEHAITVPQDR 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L + TR AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+K
Sbjct: 53 LKLREQTRSLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S G V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N
Sbjct: 113 SDGKAG--VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------- 163
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KI
Sbjct: 164 -----KKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKI 218
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K TDSS +E++ E+P +NLL+IY +I+G+T + E+ +G FK L + ++
Sbjct: 219 KSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETISTIEEKYVGKGYGDFKTDLAELVV 278
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L PIQ RY + S LD +L GA KAA +A+ TL + +G R+
Sbjct: 279 AELEPIQERYYAYLK-SEELDTILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|P00954|SYW_ECOLI Tryptophan--tRNA ligase OS=Escherichia coli (strain K12) GN=trpS
PE=1 SV=3
Length = 334
Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 220/350 (62%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D Q+L
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDAQKLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY
Sbjct: 118 -AENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY-------- 168
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
G IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 169 ----GEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D + +NLL I ++G++ E+ ++ + +G K + DA+
Sbjct: 224 VTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLTELQERYHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|P21656|SYW_BACSU Tryptophan--tRNA ligase OS=Bacillus subtilis (strain 168) GN=trpS
PE=1 SV=2
Length = 330
Score = 288 bits (737), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 213/351 (60%), Gaps = 23/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+K+ I SG+QP+GS+ LGNY+GA+K ++ LQ + Y + F IVD HAIT+P D
Sbjct: 1 MKQTIFSGIQPSGSVTLGNYIGAMKQFVELQ--------HDYNSYFCIVDQHAITVPQDR 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+K
Sbjct: 53 LELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S G E V LLTYP LMA+DILLY +D VPVGEDQKQHLELTR LAER N Y
Sbjct: 113 SK--GNEAVVSGLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAERFNKKYND-- 168
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KI
Sbjct: 169 ----------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKI 218
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K TDS ++FD +P +NLL+IY ++ T E+ + + +G FK L + ++
Sbjct: 219 KSAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVV 278
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L PIQ RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 279 NALKPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 328
>sp|Q83JA5|SYW_SHIFL Tryptophan--tRNA ligase OS=Shigella flexneri GN=trpS PE=3 SV=1
Length = 334
Score = 288 bits (736), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 220/350 (62%), Gaps = 25/350 (7%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
+ SG QP+G + +GNY+GA++ W+ +Q + Y ++ IVD HAIT+ D Q+L
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQ--------DDYHCIYCIVDQHAITVRQDAQKLR 57
Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
KAT +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS +
Sbjct: 58 KATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY 117
Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY
Sbjct: 118 -AENINAGLFGYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY-------- 168
Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 319
G IFKVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR
Sbjct: 169 ----GEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRA 223
Query: 320 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
TDS + +D + +NLL I ++G++ E+ ++ + +G K + DA+
Sbjct: 224 VTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSG 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L +Q RY +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 284 MLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAK 333
>sp|Q6AGQ7|SYW_LEIXX Tryptophan--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=trpS PE=3 SV=1
Length = 337
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/348 (43%), Positives = 215/348 (61%), Gaps = 21/348 (6%)
Query: 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
R+ SG+QP+ S+HLGNY+GA+ W LQ +++ F +VDLHAIT+ D
Sbjct: 6 RLYSGMQPSADSLHLGNYVGALLQWKELQA--------AHDAFFSVVDLHAITVAQDPHD 57
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + TR TAA Y+A GID S ++++VQSHV AH +L W+LS+ T G +M QFK+KS
Sbjct: 58 LREKTRRTAAQYIAAGIDPSVSTLYVQSHVPAHAQLAWVLSTITGYGEAARMTQFKDKSA 117
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 258
K G E V L TYPVLMA+DILL+ +D VPVG+DQ+QH+ELTR+LAER N
Sbjct: 118 KQGAEATSVGLFTYPVLMAADILLFDADVVPVGDDQRQHVELTRDLAERFN--------- 168
Query: 259 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
R G F VP+ +I GAR+ L SKMSKSA S + LLD D+ KI R
Sbjct: 169 ---SRFGETFVVPQAMILKDGARIYDLQSPESKMSKSADSGAGIVWLLDEPDIARKKIMR 225
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TD+ + +D +P +NLLSIY +SG+ ++ + + +G FK L + +++
Sbjct: 226 AVTDTDGVVSYDRAGKPGVSNLLSIYSALSGRAIQQIELDYEGKGYGDFKKGLVEVVVDA 285
Query: 379 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 426
L PI+ R E+++D A LD++LA AA+A + A+ TL Y+A+GFL+
Sbjct: 286 LGPIRERTLELLADPAELDRILAGNAARAGEAAEITLAKAYEAIGFLQ 333
>sp|Q97LD6|SYW_CLOAB Tryptophan--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=trpS PE=3 SV=2
Length = 335
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/348 (41%), Positives = 218/348 (62%), Gaps = 21/348 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
KK I SG+QP+G + +GNY GAIKNW+ LQ + Y+ + IVDLHAIT+ + +
Sbjct: 5 KKVIFSGIQPSGELTIGNYFGAIKNWVKLQ--------DEYDCYYCIVDLHAITVKQEAK 56
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L + T + A Y+A GID K ++F+QSHV AHV+ W+L+ + +G L++M QFK+KS
Sbjct: 57 DLRRRTLQLIATYIASGIDPEKNTIFIQSHVPAHVQAQWILNCMSYVGELSRMTQFKDKS 116
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
K +G LL YPVLMA+DIL+YQ+D VPVG+DQ QH+ELTR+LA+R N Y
Sbjct: 117 KKYEDTGIGAGLLNYPVLMAADILIYQADLVPVGKDQTQHIELTRDLAQRFNSTY----- 171
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
FK+PE IP GA++MSL + L KMSKS+ + S I ++DP +VI KI
Sbjct: 172 -------SETFKIPEGYIPTGGAKIMSLQEPLKKMSKSSDNPNSFILIMDPPEVIKRKIA 224
Query: 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377
R TD+ +++ + ++P NL++I +G + ++ ++ + + FK + DALI+
Sbjct: 225 RAVTDNVGVVKYTD-DQPGVKNLMNIMSCCTGMSVKDIEDKYEGQGYSKFKEDVADALIQ 283
Query: 378 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
L PIQ + E++ D AYL + GA KA+ IA+ T++ + + +GF+
Sbjct: 284 ELEPIQNKVNELLKDKAYLQDICKKGAQKASYIANKTVSKMMRKVGFI 331
>sp|Q98C31|SYW_RHILO Tryptophan--tRNA ligase OS=Rhizobium loti (strain MAFF303099)
GN=trpS PE=3 SV=1
Length = 355
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/362 (44%), Positives = 213/362 (58%), Gaps = 19/362 (5%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY 134
S+ K + SGVQPTG++HLGNYLGAIK ++ALQ D ++ +VDLH++T
Sbjct: 2 SAFKPLVFSGVQPTGNLHLGNYLGAIKKFVALQETSD--------CIYCVVDLHSLTAQL 53
Query: 135 DTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 194
+ L+ TR A +LA GID K VF QS V H EL W+ + IGW+NKM QFK
Sbjct: 54 VHEDLADQTRSITAAFLASGIDPKKHIVFNQSRVMQHAELAWIFNCVARIGWMNKMTQFK 113
Query: 195 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 254
+K+ K EN + LL YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N +
Sbjct: 114 DKAGK-DRENASLGLLAYPSLMAADILLYRATHVPVGEDQKQHLELTRDIAQKFNNDFSD 172
Query: 255 RKWK-------KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306
R + ++G F + EP+I AR+MSL DG KMSKS PSD SRINL
Sbjct: 173 RIARLGVGVEMQVGEETVNGFFPITEPVIGGPAARIMSLRDGSKKMSKSDPSDLSRINLT 232
Query: 307 DPKDVIANKIKRCKTDSSA-GLEFDNLE-RPECNNLLSIYQLISGKTKGEVAEECQNMNW 364
D D I+ KI++ KTD A E LE RPE NL+ IY ++ +K +V +E +
Sbjct: 233 DDADTISKKIRKAKTDPEALPSEVSGLESRPEAENLVGIYAGLAEMSKADVLKEFGGQQF 292
Query: 365 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 424
FKP L D +E L PI I D AY+D VL DG +A +A+ T+ V +G
Sbjct: 293 SVFKPALADLAVEKLAPIAGEMRRIEGDRAYVDAVLRDGGERAGVLAETTMKTVRDIIGL 352
Query: 425 LR 426
L+
Sbjct: 353 LQ 354
>sp|Q8FRR3|SYW_COREF Tryptophan--tRNA ligase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=trpS PE=3 SV=1
Length = 346
Score = 285 bits (728), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/353 (43%), Positives = 210/353 (59%), Gaps = 21/353 (5%)
Query: 74 SSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL 132
++ R++SG+QPT S HLGNYLGA+K WI LQ NSY+ +FI DLHAIT+
Sbjct: 9 TAQTPARVLSGIQPTADSYHLGNYLGAVKQWIDLQ--------NSYDAFYFIPDLHAITV 60
Query: 133 PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ 192
+ ++L T AA LA GID ++++FVQSH+ AH EL W+L+ T G ++M Q
Sbjct: 61 DQNPEELRARTVSGAAQLLALGIDPERSTLFVQSHIPAHAELSWVLTCLTGFGEASRMTQ 120
Query: 193 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 252
FK+KS K G E L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N
Sbjct: 121 FKDKSTKQGAERTSAGLFTYPMLMAADILLYRPQLVPVGEDQRQHLELTRTLAERFN--- 177
Query: 253 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312
R G +F+VPE IP +++ L + +KMSKS + + INLLD V
Sbjct: 178 ---------NRFGTVFEVPEGFIPEGASKIYDLQNPTAKMSKSGENPKGLINLLDDPKVS 228
Query: 313 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 372
+ +IK TD+ + FD +P +NLL I ++G++ ++ + +G K
Sbjct: 229 SKRIKSAVTDNDGVIAFDVANKPGVSNLLVIQSALTGESVDKLVAGYEGKGYGALKTDTA 288
Query: 373 DALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
DAL P++ +Y+E MSD A L++VLA GA +A +IA L VY +GFL
Sbjct: 289 DALEAFTTPLRAKYDEYMSDRAELERVLAIGAERAGEIATKVLAEVYDKIGFL 341
>sp|Q929H5|SYW_LISIN Tryptophan--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=trpS PE=3 SV=1
Length = 331
Score = 284 bits (727), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 212/351 (60%), Gaps = 23/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQF--------GQFQDEYECFYCIVDEHAITVPQDR 52
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
+L + TR AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+K
Sbjct: 53 LKLREQTRSLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDK 112
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S G V LLTYP LMA+DILLYQ++ VPVGEDQKQH+ELTR+LAER N
Sbjct: 113 SDGKAG--VSAGLLTYPPLMAADILLYQTNLVPVGEDQKQHIELTRDLAERFN------- 163
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
+ IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KI
Sbjct: 164 -----KKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKI 218
Query: 317 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376
K TDSS +E++ E+P +NLL+IY +I+G+T + E+ +G FK L + ++
Sbjct: 219 KSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETIANIEEKYVGKGYGDFKTDLAELVV 278
Query: 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L IQ RY + +S LD +L GA KAA +A+ TL + +G R+
Sbjct: 279 AELEQIQERYYAYL-ESEELDNILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q830U2|SYW_ENTFA Tryptophan--tRNA ligase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=trpS PE=3 SV=1
Length = 336
Score = 284 bits (726), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 212/349 (60%), Gaps = 17/349 (4%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
K I SG+QP+G+ +GNY+GA+K +I LQ N Y F IVD HAIT+P + Q+
Sbjct: 2 KTIFSGIQPSGTPTIGNYIGAMKQFIELQ--------NEYNCYFCIVDEHAITVPQEPQK 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
L + R AA+YLA G+D KA++F+QS V AH E W++ T IG L +M QFK+KS
Sbjct: 54 LRQQIRSLAALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQ 113
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 258
K G V LLTYP LM DI+LY +D VPVG+DQKQHLELTR+ ER N Y + +
Sbjct: 114 KNGRAGVSAGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQE 173
Query: 259 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
I +PE I G+R+MSL + KMSKS + + I++LD VI KI+
Sbjct: 174 --------ILTIPEVKIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRS 225
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
TDS+ +E++ E+P NLL+IY +G+T E+ + + +G FK L +A++
Sbjct: 226 AVTDSTGVIEYNKEEKPGITNLLNIYSAATGQTVEELVQAYEGKGYGDFKADLAEAVVAL 285
Query: 379 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L PIQVRY+E+++ S LD +L +GA A +A+ TL + A+G R+
Sbjct: 286 LEPIQVRYQELLA-SEELDMILDEGAENARLVANKTLQRMKNAVGLGRK 333
>sp|Q8ZJF2|SYW_YERPE Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2
Length = 342
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/365 (44%), Positives = 220/365 (60%), Gaps = 31/365 (8%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFF 123
LS+PT S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++
Sbjct: 3 LSKPTV------SSKPIVFSGAQPSGELTIGNYMGALRQWV--------QMQDDYDCIYC 48
Query: 124 IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 183
IVDLHAIT D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T
Sbjct: 49 IVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTY 108
Query: 184 IGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 243
G L++M QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R+
Sbjct: 109 FGELSRMTQFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 167
Query: 244 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 303
+A R N LYG IFK+PEP IP AGARVMSL D KMSKS + + I
Sbjct: 168 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVI 215
Query: 304 NLL-DPKDVIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 360
LL DPK V+ KIKR TDS A + +D ++ +NLL I ++G++ E+ +
Sbjct: 216 ELLEDPKSVV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFT 274
Query: 361 NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 420
+G K + DA+ L +Q RY D A L V+ +GAAKA A TL VY+
Sbjct: 275 GQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYE 334
Query: 421 AMGFL 425
A+GF+
Sbjct: 335 AIGFV 339
>sp|Q7VPB2|SYW_HAEDU Tryptophan--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=trpS PE=3 SV=1
Length = 342
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 218/350 (62%), Gaps = 13/350 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 137
K + SGVQP+G + +GNYLGA++NW+ LQ + Y+ LF IVDLHAIT+ D
Sbjct: 3 KSIVFSGVQPSGELTIGNYLGALRNWVTLQ--------DDYDCLFCIVDLHAITVRQDPI 54
Query: 138 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 197
L K+T + A+YLACGID +K+++F+QS V H +L W+L+ T G + +M QFK+KS
Sbjct: 55 ALRKSTLDVLALYLACGIDPNKSTIFIQSQVPEHSQLAWVLNCYTYFGEMGRMTQFKDKS 114
Query: 198 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257
+ ENV V L TYPVLMA+DILLYQ++ VPVG+DQKQHLE+TR++A R N LYG +
Sbjct: 115 ARY-EENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDIANRFNTLYGKKDA 173
Query: 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317
+ G ++F VPE I A ARVMSL + KMSKS + + I LL+ +A KIK
Sbjct: 174 E--GKLIESVFTVPECFIAKACARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKAVAKKIK 231
Query: 318 RCKTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDAL 375
R TDS +++D + +NLL I I+GK+ E+ E + +G K + D +
Sbjct: 232 RAMTDSDEPPVIKYDQKNKAGVSNLLDILAAITGKSMVELEAEFEGKMYGHLKTEVADQV 291
Query: 376 IEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+ L +Q RY+ D A L+K+ DGA KA A TL+ VY+ +GF+
Sbjct: 292 MAMLTGLQERYQRFRQDEALLEKIYRDGAEKARMRAKKTLDEVYKLIGFV 341
>sp|Q7NA61|SYW_PHOLL Tryptophan--tRNA ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=trpS PE=3 SV=1
Length = 345
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 26/365 (7%)
Query: 64 LSEPTAPVASSSSVKKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLF 122
++EPT V+ + + +K IV SG QP+G + +GNY+GA++ W+ +Q + Y+ ++
Sbjct: 1 MNEPT--VSETLNSQKPIVFSGAQPSGELTIGNYMGALRQWVKMQ--------DDYDCIY 50
Query: 123 FIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSAT 182
IVD HAIT+ D ++L K T +T A+YLACGID K+++FVQSHV H +L W+L+ T
Sbjct: 51 CIVDQHAITVRQDPKELRKRTLDTLALYLACGIDPEKSTIFVQSHVPQHAQLSWILNCYT 110
Query: 183 PIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 242
G L++M QFK+KS + EN+ L YPVLM +DIL+YQ++ VPVG DQKQHLEL+R
Sbjct: 111 YFGELSRMTQFKDKSAR-HAENINAGLFDYPVLMTADILVYQTNQVPVGIDQKQHLELSR 169
Query: 243 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302
++A+R N +YG IF VPEP IP GARVM+L D KMSKS + +
Sbjct: 170 DIAQRFNAIYGN------------IFAVPEPFIPTGGARVMALQDPEKKMSKSDDNRNNV 217
Query: 303 INLLDPKDVIANKIKRCKTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 360
I LL+ A KIKR TDS + +D ++P +NLL + ++GKT E+ E +
Sbjct: 218 IALLEDPKSAAKKIKRAVTDSEEPPRVRYDLEQKPGVSNLLDLLAGVTGKTIPELEAEFE 277
Query: 361 NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 420
+G K + DA+ L +Q R+ +D L+K++A+GAAKA A TL+ VY+
Sbjct: 278 GQMYGHLKSAVADAVSGMLTELQERFHYFRNDEILLNKIMAEGAAKAKARAQITLDKVYE 337
Query: 421 AMGFL 425
A+GF+
Sbjct: 338 AVGFI 342
>sp|Q89W91|SYW_BRAJA Tryptophan--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA
110) GN=trpS PE=3 SV=1
Length = 350
Score = 281 bits (720), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 214/359 (59%), Gaps = 24/359 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ- 137
+R+ SGVQPTG++HLGNYLGAI N++ +Q ++ ++ +VD+HAIT D
Sbjct: 5 ERVFSGVQPTGNLHLGNYLGAIVNFVKMQ--------ETHNCIYCVVDMHAITQGVDVWG 56
Query: 138 ---QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 194
+L++ TRE A ++A GID K VF QS V H EL W+ + +GWL +M QFK
Sbjct: 57 GPVELARNTREVTAAFIASGIDPKKHIVFNQSQVSGHAELAWIFNCVARMGWLGRMTQFK 116
Query: 195 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 254
EK+ K EN V L YPVLMA+DILLY++ VPVGEDQKQHLEL+R++A++ N +G
Sbjct: 117 EKAGK-DRENASVGLFDYPVLMAADILLYRATHVPVGEDQKQHLELSRDIAQKFNNDFGD 175
Query: 255 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 314
+ G G F +PEP I RVMSL DG KMSKS SD SRINL D D IA
Sbjct: 176 -SIRAQGTNDGLFFPLPEPFITGPATRVMSLRDGTKKMSKSDASDNSRINLTDDADTIAQ 234
Query: 315 KIKRCKTD------SSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 368
KI++ KTD GLE RPE +NL+ I+ ++ ++K +V + + +FK
Sbjct: 235 KIRKAKTDPEPLPTEEKGLE----ARPEADNLVGIFAALADRSKADVLRDFGGGQFSSFK 290
Query: 369 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
L + + L PI + +++D ++D +L +G+ +A IAD T+ +GF+RR
Sbjct: 291 NALAELCVTKLAPIAGEMKRLVADPGHIDAILNEGSDRARAIADETMKLSKDIVGFIRR 349
>sp|Q8EK12|SYW_SHEON Tryptophan--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=trpS PE=3 SV=1
Length = 332
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 215/351 (61%), Gaps = 23/351 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136
K ++SG QP+G + +GNY+GA++ W+A+Q +S++ L+ +VDLHAIT+ D
Sbjct: 2 TKPIVLSGAQPSGELTIGNYMGALRQWVAMQ--------DSHDCLYCVVDLHAITVRQDP 53
Query: 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 196
Q L +A +T A+YLACG+D K++VF+QS V H +L W L+ T +G L++M QFK+K
Sbjct: 54 QALREACLDTLALYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDK 113
Query: 197 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256
S K N+ V L YPVLMA+DILLYQ++ +PVG+DQKQHLELTR++A R N Y
Sbjct: 114 SQKHAN-NINVGLFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFNNAY---- 168
Query: 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 316
G F +PEP IP GA+VMSL D L KMSKS + + I LL+ + K+
Sbjct: 169 --------GETFTIPEPFIPEHGAKVMSLQDPLKKMSKSDDNRNNVIGLLEDPKAVMKKL 220
Query: 317 KRCKTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDA 374
K+ TDS + FD +P +NLLS+ I+G++ + E + +G K +A
Sbjct: 221 KKAMTDSDEPPVVRFDIENKPGVSNLLSLMSGITGQSIASLEAEFEGKMYGHLKGAAGEA 280
Query: 375 LIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
++ L P+Q RY + +D AYLD+V+ GA A A+ TL VY+ +G L
Sbjct: 281 VVGMLEPLQERYRALRADRAYLDQVMRAGAENAQARAEVTLKKVYEKIGLL 331
>sp|P67590|SYW_MYCTU Tryptophan--tRNA ligase OS=Mycobacterium tuberculosis GN=trpS PE=3
SV=1
Length = 336
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT 131
S+ + +RI SGVQPT S+HLGN LGA+ W+ LQ + ++ F +VDLHAIT
Sbjct: 2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQ--------DDHDAFFCVVDLHAIT 53
Query: 132 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 191
+P D + L + T TAA YLA GID +A++FVQS V AH +L W+L T G ++M
Sbjct: 54 IPQDPEALRRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMT 113
Query: 192 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 251
QFK+KS + G E V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N
Sbjct: 114 QFKDKSARQGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSR 173
Query: 252 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 311
+ G VP+ LIP A++ L D SKMSKSA +D INLLD +
Sbjct: 174 FPG------------TLVVPDVLIPKMTAKIYDLQDPTSKMSKSAGTDAGLINLLDDPAL 221
Query: 312 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLL 371
A KI+ TDS + +D +P +NLL+I ++G + + +G K
Sbjct: 222 SAKKIRSAVTDSERDIRYDPDVKPGVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDT 281
Query: 372 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+A++E ++PIQ R +E+ +D A L+ VLA GA +A D+A T+ VY +GFL
Sbjct: 282 AEAVVEFVNPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQRVYDRLGFL 335
>sp|P67591|SYW_MYCBO Tryptophan--tRNA ligase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=trpS PE=3 SV=1
Length = 336
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT 131
S+ + +RI SGVQPT S+HLGN LGA+ W+ LQ + ++ F +VDLHAIT
Sbjct: 2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQ--------DDHDAFFCVVDLHAIT 53
Query: 132 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 191
+P D + L + T TAA YLA GID +A++FVQS V AH +L W+L T G ++M
Sbjct: 54 IPQDPEALRRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMT 113
Query: 192 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 251
QFK+KS + G E V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N
Sbjct: 114 QFKDKSARQGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSR 173
Query: 252 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 311
+ G VP+ LIP A++ L D SKMSKSA +D INLLD +
Sbjct: 174 FPG------------TLVVPDVLIPKMTAKIYDLQDPTSKMSKSAGTDAGLINLLDDPAL 221
Query: 312 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLL 371
A KI+ TDS + +D +P +NLL+I ++G + + +G K
Sbjct: 222 SAKKIRSAVTDSERDIRYDPDVKPGVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDT 281
Query: 372 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
+A++E ++PIQ R +E+ +D A L+ VLA GA +A D+A T+ VY +GFL
Sbjct: 282 AEAVVEFVNPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQRVYDRLGFL 335
>sp|Q8NSJ4|SYW_CORGL Tryptophan--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=trpS PE=3 SV=1
Length = 345
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/353 (42%), Positives = 209/353 (59%), Gaps = 21/353 (5%)
Query: 74 SSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL 132
++ R++SG+QPT S HLGNYLGA+K WI LQ +SY+ +FI DLHAIT+
Sbjct: 9 TAQTASRVLSGIQPTADSYHLGNYLGAVKQWIDLQ--------DSYDAFYFIPDLHAITV 60
Query: 133 PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ 192
+ ++L T AA LA GID ++++FVQSHV AH EL W+L+ T G ++M Q
Sbjct: 61 DQEPEELRNRTISGAAQLLALGIDPERSTLFVQSHVPAHAELSWVLTCLTGFGEASRMTQ 120
Query: 193 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 252
FK+KS K G + L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N
Sbjct: 121 FKDKSSKRGADRTSAGLFTYPMLMAADILLYRPHLVPVGEDQRQHLELTRTLAERFN--- 177
Query: 253 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312
R G F+VPE IP +++ L + +KMSKS + + INLLD V
Sbjct: 178 ---------NRFGKAFEVPEGFIPQGASKIYDLQNPTAKMSKSGDNPKGIINLLDDPKVS 228
Query: 313 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 372
+IK TD+ + +D +P +NLL I ++G + + + Q +G K
Sbjct: 229 TKRIKSAVTDNDGVIAYDPENKPGVSNLLVIQSALTGTSIDSLVDGYQGAGYGALKGDTA 288
Query: 373 DALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425
DAL P++ +Y+E M+D L++VLA GA +A ++A+ TL +VY +GFL
Sbjct: 289 DALEAFTTPLKAKYDEYMNDRGELERVLAIGAERATEVANETLADVYDKIGFL 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,063,153
Number of Sequences: 539616
Number of extensions: 6569010
Number of successful extensions: 16978
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 16348
Number of HSP's gapped (non-prelim): 235
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)