Query 014300
Match_columns 427
No_of_seqs 178 out of 1328
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 1E-103 3E-108 800.8 38.6 362 57-426 25-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 2E-101 5E-106 739.5 29.6 331 78-427 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 8.2E-96 2E-100 748.6 34.6 323 78-425 2-332 (431)
4 PRK12556 tryptophanyl-tRNA syn 100.0 7.9E-94 1.7E-98 720.9 33.7 320 78-425 3-332 (332)
5 PRK00927 tryptophanyl-tRNA syn 100.0 1.3E-93 2.9E-98 720.7 34.5 327 79-426 2-332 (333)
6 PRK12283 tryptophanyl-tRNA syn 100.0 5.8E-93 1.3E-97 722.3 36.2 334 78-426 2-398 (398)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 1.5E-91 3.3E-96 692.9 28.5 305 77-406 4-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 6.3E-90 1.4E-94 693.2 34.5 323 78-425 2-330 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 1.8E-88 3.9E-93 681.8 32.5 319 77-424 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 1.1E-74 2.4E-79 570.8 26.3 274 80-378 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 2.6E-73 5.6E-78 578.7 27.6 286 77-403 65-365 (368)
12 PTZ00126 tyrosyl-tRNA syntheta 100.0 3E-69 6.5E-74 551.1 25.4 269 76-388 64-365 (383)
13 PRK08560 tyrosyl-tRNA syntheta 100.0 3.7E-69 8.1E-74 542.4 24.6 268 76-388 28-322 (329)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 1E-65 2.2E-70 553.5 27.9 281 77-389 31-340 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 3.7E-60 8E-65 483.6 27.5 276 76-390 71-369 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 2E-60 4.4E-65 471.0 16.8 275 77-380 4-292 (292)
17 cd00395 Tyr_Trp_RS_core cataly 100.0 1.8E-58 3.8E-63 454.0 24.8 248 80-378 1-273 (273)
18 cd00805 TyrRS_core catalytic c 100.0 8.3E-59 1.8E-63 455.5 20.1 249 79-378 1-269 (269)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 4.2E-50 9E-55 414.3 23.1 258 77-385 32-314 (408)
20 KOG2144 Tyrosyl-tRNA synthetas 100.0 1.5E-47 3.4E-52 368.7 18.2 269 77-390 33-335 (360)
21 PRK13354 tyrosyl-tRNA syntheta 100.0 9.6E-47 2.1E-51 389.2 23.3 260 76-387 31-314 (410)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.3E-42 2.8E-47 355.3 19.1 250 78-381 30-294 (377)
23 KOG2145 Cytoplasmic tryptophan 100.0 1.5E-42 3.3E-47 334.2 13.9 276 77-390 84-382 (397)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 4.1E-40 8.8E-45 355.3 23.9 228 115-387 405-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1E-33 2.2E-38 289.9 18.5 271 78-390 32-358 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.7 3.2E-15 6.8E-20 150.5 16.7 258 78-382 63-352 (467)
27 cd00808 GluRS_core catalytic c 99.6 4.5E-15 9.7E-20 143.7 10.9 171 86-318 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.4 6.4E-13 1.4E-17 118.3 10.8 63 212-296 78-143 (143)
29 cd00418 GlxRS_core catalytic c 98.8 4E-08 8.6E-13 95.0 10.6 169 86-317 9-181 (230)
30 cd00674 LysRS_core_class_I cat 98.5 1E-06 2.2E-11 90.3 12.9 86 78-171 20-132 (353)
31 PRK00750 lysK lysyl-tRNA synth 98.5 7.2E-07 1.6E-11 95.6 11.8 65 223-313 233-304 (510)
32 PRK14895 gltX glutamyl-tRNA sy 98.2 5.6E-05 1.2E-09 80.9 16.1 198 80-318 4-269 (513)
33 PRK05710 glutamyl-Q tRNA(Asp) 98.2 6.9E-06 1.5E-10 82.4 8.7 174 86-296 13-241 (299)
34 TIGR00464 gltX_bact glutamyl-t 98.1 0.00023 5E-09 75.8 19.9 192 86-318 9-270 (470)
35 cd02156 nt_trans nucleotidyl t 98.1 1.2E-05 2.6E-10 68.0 7.9 57 81-149 2-58 (105)
36 PRK01406 gltX glutamyl-tRNA sy 98.1 6.1E-05 1.3E-09 80.2 14.6 193 86-318 12-280 (476)
37 TIGR00467 lysS_arch lysyl-tRNA 97.9 3.2E-05 6.9E-10 83.0 8.2 83 78-168 19-128 (515)
38 cd09287 GluRS_non_core catalyt 97.7 0.00021 4.6E-09 69.6 9.2 162 83-296 6-171 (240)
39 cd00668 Ile_Leu_Val_MetRS_core 97.6 0.0004 8.6E-09 69.7 11.0 59 224-306 226-285 (312)
40 PLN02627 glutamyl-tRNA synthet 97.6 0.005 1.1E-07 66.4 19.7 98 80-190 47-159 (535)
41 TIGR03838 queuosine_YadB gluta 97.6 0.00081 1.8E-08 66.8 12.4 175 86-297 8-235 (272)
42 COG0008 GlnS Glutamyl- and glu 97.6 0.00033 7.1E-09 74.5 9.6 179 81-297 10-256 (472)
43 cd00807 GlnRS_core catalytic c 97.6 0.00034 7.3E-09 68.1 8.9 155 86-297 9-170 (238)
44 PF01921 tRNA-synt_1f: tRNA sy 97.4 0.00031 6.6E-09 72.1 7.3 69 221-314 231-307 (360)
45 PLN03233 putative glutamate-tR 97.4 0.00051 1.1E-08 73.7 8.9 93 81-188 12-114 (523)
46 PRK00260 cysS cysteinyl-tRNA s 97.4 0.0062 1.3E-07 64.8 17.0 76 78-158 23-110 (463)
47 PRK12410 glutamylglutaminyl-tR 97.4 0.00065 1.4E-08 71.5 9.2 90 86-190 7-104 (433)
48 PRK12558 glutamyl-tRNA synthet 97.4 0.001 2.3E-08 70.2 10.6 90 86-190 10-107 (445)
49 PRK01611 argS arginyl-tRNA syn 97.3 0.00029 6.4E-09 75.6 5.3 195 81-311 116-339 (507)
50 PRK04156 gltX glutamyl-tRNA sy 97.3 0.0021 4.5E-08 69.9 11.6 182 78-296 101-343 (567)
51 PTZ00402 glutamyl-tRNA synthet 97.2 0.0018 3.8E-08 70.6 10.4 178 80-296 52-293 (601)
52 COG1384 LysS Lysyl-tRNA synthe 97.2 0.0016 3.4E-08 69.2 9.7 85 77-168 19-131 (521)
53 PF00749 tRNA-synt_1c: tRNA sy 97.1 0.0032 6.9E-08 63.8 10.5 91 86-190 9-107 (314)
54 cd00671 ArgRS_core catalytic c 97.1 0.0016 3.4E-08 62.0 7.8 156 82-249 6-184 (212)
55 PLN02859 glutamine-tRNA ligase 97.0 0.002 4.3E-08 72.0 8.4 93 81-188 265-367 (788)
56 PLN02907 glutamate-tRNA ligase 96.6 0.018 3.9E-07 64.5 12.1 94 80-188 213-316 (722)
57 cd00812 LeuRS_core catalytic c 96.6 0.0053 1.1E-07 61.9 7.1 81 87-173 11-101 (314)
58 cd00672 CysRS_core catalytic c 96.3 0.031 6.7E-07 53.6 10.4 74 79-157 22-105 (213)
59 PRK05347 glutaminyl-tRNA synth 95.7 0.032 6.8E-07 60.5 8.1 95 81-189 30-134 (554)
60 PTZ00437 glutaminyl-tRNA synth 95.5 0.032 6.9E-07 60.6 7.0 94 81-189 52-155 (574)
61 TIGR00440 glnS glutaminyl-tRNA 95.2 0.059 1.3E-06 58.2 8.0 91 86-190 8-106 (522)
62 TIGR00435 cysS cysteinyl-tRNA 95.2 0.18 4E-06 53.8 11.7 76 79-159 23-108 (465)
63 TIGR00463 gltX_arch glutamyl-t 95.2 0.049 1.1E-06 59.3 7.4 94 80-188 93-196 (560)
64 PRK14703 glutaminyl-tRNA synth 94.7 0.081 1.8E-06 59.6 7.7 97 80-190 31-137 (771)
65 PLN02946 cysteine-tRNA ligase 93.6 0.66 1.4E-05 50.7 11.6 71 210-305 263-334 (557)
66 TIGR00234 tyrS tyrosyl-tRNA sy 90.1 0.69 1.5E-05 48.1 6.6 56 280-356 212-267 (377)
67 PRK00133 metG methionyl-tRNA s 89.5 0.85 1.8E-05 50.9 7.1 87 78-172 3-100 (673)
68 PRK12268 methionyl-tRNA synthe 86.8 1.7 3.6E-05 47.3 7.2 75 80-159 5-92 (556)
69 PF09334 tRNA-synt_1g: tRNA sy 86.7 1.8 3.9E-05 45.2 7.0 79 86-172 9-97 (391)
70 PLN02224 methionine-tRNA ligas 85.5 2.5 5.3E-05 46.9 7.7 76 78-158 70-156 (616)
71 PRK05743 ileS isoleucyl-tRNA s 83.3 0.92 2E-05 52.5 3.3 59 221-305 542-603 (912)
72 COG0143 MetG Methionyl-tRNA sy 82.7 3.2 7E-05 45.5 7.0 79 86-173 15-104 (558)
73 KOG1147 Glutamyl-tRNA syntheta 81.3 3.4 7.3E-05 44.9 6.2 73 80-169 200-276 (712)
74 cd00818 IleRS_core catalytic c 81.2 1.6 3.4E-05 44.7 3.7 39 87-130 12-52 (338)
75 PRK12300 leuS leucyl-tRNA synt 79.2 1.2 2.6E-05 51.5 2.3 58 223-306 529-589 (897)
76 PRK12267 methionyl-tRNA synthe 78.9 20 0.00042 40.0 11.7 67 87-158 15-91 (648)
77 cd00817 ValRS_core catalytic c 78.9 1.4 3E-05 45.8 2.5 60 223-306 295-355 (382)
78 PRK11893 methionyl-tRNA synthe 78.9 1.1 2.3E-05 48.0 1.7 67 87-158 12-88 (511)
79 PRK14900 valS valyl-tRNA synth 78.1 1.7 3.7E-05 51.1 3.2 61 223-307 490-551 (1052)
80 PLN02610 probable methionyl-tR 77.8 8.6 0.00019 44.0 8.6 88 77-173 17-117 (801)
81 TIGR00395 leuS_arch leucyl-tRN 77.2 1.5 3.3E-05 50.9 2.4 70 223-318 572-649 (938)
82 TIGR00456 argS arginyl-tRNA sy 77.0 1.9 4.1E-05 47.2 3.0 77 208-314 307-392 (566)
83 cd00814 MetRS_core catalytic c 75.8 3.9 8.5E-05 41.2 4.7 68 87-159 11-88 (319)
84 PRK11893 methionyl-tRNA synthe 75.0 7.2 0.00016 41.7 6.7 60 223-307 253-312 (511)
85 TIGR00392 ileS isoleucyl-tRNA 74.4 2.3 4.9E-05 48.9 2.9 14 223-236 563-576 (861)
86 PRK00390 leuS leucyl-tRNA synt 73.1 9.5 0.0002 43.7 7.4 75 78-158 33-119 (805)
87 PRK05729 valS valyl-tRNA synth 72.1 2.8 6.1E-05 48.3 2.9 62 222-307 471-533 (874)
88 PRK12418 cysteinyl-tRNA synthe 71.1 3.8 8.3E-05 42.9 3.4 70 213-306 203-273 (384)
89 PRK12267 methionyl-tRNA synthe 70.9 7 0.00015 43.4 5.6 69 224-317 254-327 (648)
90 COG0495 LeuS Leucyl-tRNA synth 70.9 8.7 0.00019 44.0 6.3 81 77-167 34-130 (814)
91 TIGR00398 metG methionyl-tRNA 70.7 6.2 0.00013 42.6 5.0 68 87-159 10-87 (530)
92 PLN02943 aminoacyl-tRNA ligase 69.0 4.4 9.6E-05 47.2 3.6 61 222-307 534-596 (958)
93 PRK13804 ileS isoleucyl-tRNA s 69.0 3.1 6.8E-05 48.4 2.4 16 221-236 580-595 (961)
94 PRK14536 cysS cysteinyl-tRNA s 68.9 21 0.00045 38.7 8.4 76 78-158 23-119 (490)
95 PF00133 tRNA-synt_1: tRNA syn 68.7 4.1 8.8E-05 45.0 3.1 60 223-305 513-572 (601)
96 PRK13208 valS valyl-tRNA synth 68.2 4.9 0.00011 45.9 3.7 60 223-306 485-545 (800)
97 TIGR00422 valS valyl-tRNA synt 66.3 4.8 0.0001 46.3 3.2 62 222-307 476-538 (861)
98 cd00814 MetRS_core catalytic c 65.3 4.5 9.8E-05 40.8 2.5 58 224-306 235-292 (319)
99 PRK06039 ileS isoleucyl-tRNA s 64.7 5.5 0.00012 46.5 3.3 15 222-236 543-557 (975)
100 PLN02381 valyl-tRNA synthetase 63.7 5.8 0.00013 46.8 3.3 60 222-306 606-667 (1066)
101 PLN02959 aminoacyl-tRNA ligase 63.0 7 0.00015 46.2 3.8 60 222-306 669-730 (1084)
102 PLN02843 isoleucyl-tRNA synthe 62.3 6.1 0.00013 46.2 3.1 16 221-236 561-576 (974)
103 PTZ00419 valyl-tRNA synthetase 62.2 7.3 0.00016 45.6 3.7 61 222-306 536-597 (995)
104 cd00818 IleRS_core catalytic c 62.1 7.8 0.00017 39.6 3.5 58 223-306 251-311 (338)
105 TIGR03447 mycothiol_MshC cyste 61.8 6.7 0.00015 41.4 3.0 72 80-156 39-120 (411)
106 PRK14535 cysS cysteinyl-tRNA s 59.5 65 0.0014 36.4 10.2 78 77-159 247-335 (699)
107 cd02168 NMNAT_Nudix Nicotinami 58.8 45 0.00098 31.1 7.7 75 85-177 8-85 (181)
108 PRK12268 methionyl-tRNA synthe 57.0 7.6 0.00016 42.2 2.6 57 226-306 289-346 (556)
109 PLN02882 aminoacyl-tRNA ligase 56.5 10 0.00023 45.1 3.7 76 205-304 547-624 (1159)
110 PLN02660 pantoate--beta-alanin 56.4 48 0.001 33.4 7.9 69 223-321 145-213 (284)
111 KOG1149 Glutamyl-tRNA syntheta 56.2 17 0.00036 38.8 4.7 98 79-190 34-147 (524)
112 COG0495 LeuS Leucyl-tRNA synth 55.7 66 0.0014 37.1 9.7 63 224-306 526-591 (814)
113 PLN02286 arginine-tRNA ligase 55.4 14 0.00031 40.6 4.3 66 226-311 330-395 (576)
114 COG0018 ArgS Arginyl-tRNA synt 54.2 12 0.00026 41.3 3.4 67 226-315 337-404 (577)
115 TIGR00396 leuS_bact leucyl-tRN 52.2 22 0.00047 41.0 5.3 75 79-158 31-116 (842)
116 PF01406 tRNA-synt_1e: tRNA sy 52.0 12 0.00025 38.1 2.7 76 78-158 8-94 (300)
117 cd00817 ValRS_core catalytic c 51.7 13 0.00029 38.6 3.2 39 87-130 12-52 (382)
118 PLN02563 aminoacyl-tRNA ligase 51.3 11 0.00025 44.0 2.9 28 222-249 614-642 (963)
119 TIGR00398 metG methionyl-tRNA 50.6 12 0.00026 40.3 2.8 55 227-307 285-340 (530)
120 COG2442 Uncharacterized conser 50.5 41 0.00088 27.4 5.2 43 333-377 29-71 (79)
121 TIGR00396 leuS_bact leucyl-tRN 50.4 11 0.00024 43.3 2.7 24 223-246 519-543 (842)
122 PLN02563 aminoacyl-tRNA ligase 49.7 73 0.0016 37.5 9.1 75 79-158 112-198 (963)
123 PTZ00399 cysteinyl-tRNA-synthe 48.6 9.8 0.00021 42.6 1.8 71 213-307 257-328 (651)
124 PRK14536 cysS cysteinyl-tRNA s 45.1 15 0.00033 39.7 2.5 70 211-305 220-290 (490)
125 PF05957 DUF883: Bacterial pro 44.1 1.2E+02 0.0025 25.0 7.2 57 364-420 14-71 (94)
126 PRK12451 arginyl-tRNA syntheta 43.7 24 0.00053 38.7 3.9 61 225-310 326-387 (562)
127 COG0143 MetG Methionyl-tRNA sy 43.5 1E+02 0.0022 34.1 8.4 31 268-306 315-345 (558)
128 PRK00390 leuS leucyl-tRNA synt 42.9 19 0.0004 41.4 2.9 23 223-245 522-545 (805)
129 PRK14534 cysS cysteinyl-tRNA s 41.9 54 0.0012 35.5 6.0 76 78-158 21-117 (481)
130 PF00750 tRNA-synt_1d: tRNA sy 40.3 13 0.00029 38.2 1.1 73 225-318 240-312 (354)
131 PRK13208 valS valyl-tRNA synth 39.8 33 0.00071 39.2 4.2 76 78-158 39-138 (800)
132 PRK00133 metG methionyl-tRNA s 39.6 22 0.00049 39.8 2.8 31 268-306 311-341 (673)
133 cd02166 NMNAT_Archaea Nicotina 36.9 1.8E+02 0.0039 26.4 7.9 66 85-168 8-77 (163)
134 PF04255 DUF433: Protein of un 36.0 54 0.0012 24.6 3.6 38 333-372 17-54 (56)
135 PLN02224 methionine-tRNA ligas 35.8 28 0.0006 38.8 2.8 60 223-307 320-379 (616)
136 COG4320 Uncharacterized protei 35.1 49 0.0011 34.1 4.1 27 88-128 62-88 (410)
137 TIGR00018 panC pantoate--beta- 35.0 1.3E+02 0.0028 30.4 7.1 69 223-321 142-210 (282)
138 PTZ00427 isoleucine-tRNA ligas 35.0 33 0.00071 41.2 3.3 33 206-238 653-687 (1205)
139 COG0215 CysS Cysteinyl-tRNA sy 34.6 24 0.00053 37.9 2.0 72 212-307 209-281 (464)
140 COG0525 ValS Valyl-tRNA synthe 34.0 25 0.00053 40.7 2.0 37 87-129 44-82 (877)
141 PHA01929 putative scaffolding 33.1 3E+02 0.0064 27.7 9.0 30 331-360 115-144 (306)
142 PTZ00419 valyl-tRNA synthetase 33.0 45 0.00098 39.2 4.0 48 79-131 62-112 (995)
143 PF00750 tRNA-synt_1d: tRNA sy 32.4 57 0.0012 33.6 4.3 38 82-128 26-70 (354)
144 PLN02843 isoleucyl-tRNA synthe 30.8 65 0.0014 37.9 4.8 77 78-159 33-136 (974)
145 PF04048 Sec8_exocyst: Sec8 ex 29.8 4E+02 0.0087 23.7 10.9 87 335-425 19-105 (142)
146 KOG1148 Glutaminyl-tRNA synthe 27.7 92 0.002 34.7 4.9 98 80-194 248-357 (764)
147 COG3783 CybC Soluble cytochrom 27.7 1.1E+02 0.0025 25.9 4.4 42 380-421 53-94 (100)
148 PLN02610 probable methionyl-tR 26.6 26 0.00057 40.2 0.7 57 227-306 304-360 (801)
149 PLN02943 aminoacyl-tRNA ligase 26.3 64 0.0014 37.9 3.7 49 78-131 89-140 (958)
150 PF02662 FlpD: Methyl-viologen 25.6 2.4E+02 0.0052 24.6 6.4 70 84-167 33-103 (124)
151 PRK14534 cysS cysteinyl-tRNA s 25.5 43 0.00092 36.3 2.0 65 216-305 225-290 (481)
152 TIGR00456 argS arginyl-tRNA sy 25.4 64 0.0014 35.4 3.4 21 80-100 116-136 (566)
153 PRK10404 hypothetical protein; 25.4 3.6E+02 0.0078 22.9 7.2 56 365-420 22-78 (101)
154 TIGR00422 valS valyl-tRNA synt 24.9 42 0.00091 38.7 1.9 48 78-130 34-84 (861)
155 PF01406 tRNA-synt_1e: tRNA sy 24.7 1.6E+02 0.0035 29.9 5.8 68 213-305 195-263 (300)
156 PRK14535 cysS cysteinyl-tRNA s 24.2 3.1E+02 0.0067 31.2 8.3 36 210-247 432-468 (699)
157 COG0525 ValS Valyl-tRNA synthe 24.2 27 0.00059 40.3 0.2 15 287-305 522-536 (877)
158 PF09334 tRNA-synt_1g: tRNA sy 22.2 26 0.00056 36.7 -0.4 30 268-305 309-338 (391)
159 KOG0437 Leucyl-tRNA synthetase 22.1 1.2E+02 0.0025 34.9 4.5 31 369-404 789-819 (1080)
160 PF09551 Spore_II_R: Stage II 21.6 3.4E+02 0.0073 24.3 6.6 49 365-417 19-67 (130)
161 TIGR03447 mycothiol_MshC cyste 21.6 2.9E+02 0.0064 29.3 7.2 69 213-305 230-299 (411)
162 COG4575 ElaB Uncharacterized c 20.6 2.4E+02 0.0053 24.3 5.2 22 402-423 37-58 (104)
163 PF01467 CTP_transf_2: Cytidyl 20.3 4.5E+02 0.0098 22.1 7.2 32 90-131 8-40 (157)
164 PF15605 Toxin_52: Putative to 20.3 1.3E+02 0.0029 25.7 3.5 32 390-422 70-101 (103)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-103 Score=800.82 Aligned_cols=362 Identities=79% Similarity=1.220 Sum_probs=337.2
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCH
Q 014300 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 136 (427)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~ 136 (427)
+|+++.++..+..+.+.+.-.+.+|||||||||.+|||||+|+|++|+++ |++++++||||||||+|+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~l--------Q~~~~~~~~IADlHAlt~~~~~ 96 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVAL--------QETYDTFFCVVDLHAITLPHDP 96 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHH--------hccCCEEEEEecHHHhhCCCCH
Confidence 44444444555555555555567899999999999999999999999999 8999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHH
Q 014300 137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM 216 (427)
Q Consensus 137 ~~l~~~~~~~~a~~lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQ 216 (427)
+++++++++++++|+||||||+|++||+||++++|+||+|+|+|.+++++|+||+|||++.+..+.+++++|+|+||+||
T Consensus 97 ~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLq 176 (389)
T PLN02886 97 RELGKATRSTAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLM 176 (389)
T ss_pred HHHHHHHHHHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987765467899999999999
Q ss_pred HhhhhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014300 217 ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 296 (427)
Q Consensus 217 AADIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 296 (427)
|||||+|++|+||||+||+||+|||||||+|||+.||...++++|.+.+.+|++|++++++.+++||||+||++|||||+
T Consensus 177 AADILl~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~ 256 (389)
T PLN02886 177 ASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSA 256 (389)
T ss_pred HhhhhhcCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCC
Confidence 99999999999999999999999999999999999986656666666667899999999876689999998888999999
Q ss_pred CCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHH
Q 014300 297 PSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 376 (427)
Q Consensus 297 p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~ 376 (427)
|+++|+|+|+|+||+|++|||+|+||+.+++++++|++|+++|++.||..+++.+++|++++|+++++++||+.|++.|+
T Consensus 257 p~~~s~I~L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~ 336 (389)
T PLN02886 257 PSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALI 336 (389)
T ss_pred CCCCCeEEecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 98789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 377 ~~L~pirer~~~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
++|+|||+||+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus 337 ~~L~Pirer~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 337 EHLSPIQVRYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999963
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-101 Score=739.47 Aligned_cols=331 Identities=54% Similarity=0.844 Sum_probs=320.5
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccc----eEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHc
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLAC 153 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~----~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~ 153 (427)
+.++||||||||.+|||||+|++++|++| |+.+ .|+|+|+|+||+|.|.++..+|+++.+++|.+|||
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~L--------Q~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAc 84 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQL--------QNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLAC 84 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHH--------HHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999 7754 47999999999999999999999999999999999
Q ss_pred CccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccc
Q 014300 154 GIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 233 (427)
Q Consensus 154 GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~D 233 (427)
||||+|+.+|+||+||+|+||.|+|+|.++++||+||+|||+|+.+.+.+.+++|+|+||+|||||||+|++++||||+|
T Consensus 85 GIdp~Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeD 164 (347)
T KOG2713|consen 85 GIDPEKSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGED 164 (347)
T ss_pred ccCcccceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCcc
Confidence 99999999999999999999999999999999999999999999766667899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHH
Q 014300 234 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 313 (427)
Q Consensus 234 Q~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~ 313 (427)
|.||+||+|++|++||..||+ ++|++|+.++....++|+||+||.+|||||+|++.++|+|+|+|+.|.
T Consensus 165 QsQHleL~r~lA~~fN~~Y~~-----------~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~ 233 (347)
T KOG2713|consen 165 QSQHLELARHLAQAFNKTYGT-----------EIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIV 233 (347)
T ss_pred HHHHHHHHHHHHHHHhhhccC-----------eeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHH
Confidence 999999999999999999996 679999999987568999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCH
Q 014300 314 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDS 393 (427)
Q Consensus 314 kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~ 393 (427)
+||+||.||....++||+.+||+++|+++||+.+++.+++|+.+++.+++++++|..|||+|+++|+|||++|+++++++
T Consensus 234 ~Ki~ka~TD~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~ 313 (347)
T KOG2713|consen 234 KKIKKAQTDNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEP 313 (347)
T ss_pred HHHHHHhcccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 014300 394 AYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427 (427)
Q Consensus 394 ~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~~ 427 (427)
+|+++||.+|++|||++|.+||.+||+.|||..+
T Consensus 314 ~~l~kvl~~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 314 EYLDKVLEEGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999754
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.2e-96 Score=748.64 Aligned_cols=323 Identities=36% Similarity=0.600 Sum_probs=300.4
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
..+|||||||||.+|||||+|+|++|+.+|. |.+++|+||||||||+|++.+++++++++++++++|+||||||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~------q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDP 75 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASR------QPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDP 75 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHH------hCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3689999999999999999999999999921 2389999999999999988899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhh---C---CCCcccccchhhHHHHhhhhccccceEecc
Q 014300 158 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVG 231 (427)
Q Consensus 158 ~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~---~---~~~~~~g~l~YPvLQAADIll~~adlvpvG 231 (427)
+|++||+||++++|+||+|+|+|.+++++|+||+|||++.... + .+++++|+|+||+|||||||+|++|+||||
T Consensus 76 ek~~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG 155 (431)
T PRK12284 76 ERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVG 155 (431)
T ss_pred cceEEEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEc
Confidence 9999999999999999999999999999999999999875432 1 145799999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014300 232 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 311 (427)
Q Consensus 232 ~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~ 311 (427)
+||+||+|||||||+|||+.||. ++|++|++++..++++|||| +| +|||||+ +|+|+|+|+|++
T Consensus 156 ~DQ~qHlELaRdIA~rFN~~yg~-----------~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~ 219 (431)
T PRK12284 156 RDQIQHIEMARDIAQRFNHLYGG-----------EFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREE 219 (431)
T ss_pred chhHHHHHHHHHHHHHHhhhcCC-----------cccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHH
Confidence 99999999999999999999974 46999999998777899999 45 6999998 489999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC-CCHHHHHHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014300 312 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEI 389 (427)
Q Consensus 312 I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~-~~~eel~~~y~-~l~~gdlK~~Lae~I~~~L~pirer~~~~ 389 (427)
|++|||+|+||+.+ ..++++|++||+|+||++|++ +++++++++|. +++|++||+.|++.|+++|+|||+||+++
T Consensus 220 I~kKI~~A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l 296 (431)
T PRK12284 220 LKKAIFSIVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEAL 296 (431)
T ss_pred HHHHHhcCCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 235789999999999999975 67999999997 78999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014300 390 MSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425 (427)
Q Consensus 390 ~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~ 425 (427)
++|++||++||++|++|||++|++||++||++|||.
T Consensus 297 ~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 297 IARPADIEDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999999999999999985
No 4
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.9e-94 Score=720.88 Aligned_cols=320 Identities=37% Similarity=0.613 Sum_probs=298.0
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccc--eEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCc
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSY--ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGI 155 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~--~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~Gi 155 (427)
+.++||||||||.+|||||+|++++|+++ |+.+ +++|+||||||+|.+++++++++++++++++|+||||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~l--------q~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~Gl 74 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQM--------AKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGL 74 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHH--------HHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheee
Confidence 46999999999999999999999999999 6654 5999999999998788999999999999999999999
Q ss_pred cCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC------CCCcccccchhhHHHHhhhhccccceEe
Q 014300 156 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVP 229 (427)
Q Consensus 156 Dp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~------~~~~~~g~l~YPvLQAADIll~~adlvp 229 (427)
||+|++||+||++++|++|+|+|+|.+++|||+||+|||++..... ++++++|+|+||+|||||||+|++|+||
T Consensus 75 DP~k~~if~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~Vp 154 (332)
T PRK12556 75 DPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVP 154 (332)
T ss_pred cccceEEEECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEE
Confidence 9999999999999999999999999999999999999999865321 2467999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014300 230 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 309 (427)
Q Consensus 230 vG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dsp 309 (427)
||+||+||+|||||||+|||+.|| .+|++|+++++++.+++||| +| +|||||++ |+|+|+|+|
T Consensus 155 vG~DQ~qhleLtRdiA~rfn~~yg------------~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p 217 (332)
T PRK12556 155 VGKDQIQHIEIARDIATYFNHTFG------------DTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQ 217 (332)
T ss_pred eccccHHHHHHHHHHHHHHHHhcc------------ccCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCH
Confidence 999999999999999999999998 57999999987656799999 56 59999984 789999999
Q ss_pred HHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC-CCHHHHHHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014300 310 DVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 310 e~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~-~~~eel~~~y~-~l~~gdlK~~Lae~I~~~L~pirer~~ 387 (427)
++|++||++|+||+.+ .+.+++|++||+++||++|++ +++++++++|. +++|++||+.||+.|+++|+|+|+||+
T Consensus 218 ~~I~kKI~ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~ 294 (332)
T PRK12556 218 EKLRKLIFKIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYA 294 (332)
T ss_pred HHHHHHHHHhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 345789999999999999975 57899999998 789999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014300 388 EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425 (427)
Q Consensus 388 ~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~ 425 (427)
++++|++||++||++|++|||++|++||++||++|||.
T Consensus 295 ~~~~~~~~~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 295 MYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999983
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-93 Score=720.66 Aligned_cols=327 Identities=57% Similarity=0.939 Sum_probs=311.0
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
+++||||+|||.+|||||+|+|++|+++ |+.++++|+||||||+|++.+++++++++++++++|+||||||+
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~l--------Q~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVEL--------QDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPE 73 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHH--------HhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChh
Confidence 6899999999999999999999999999 88899999999999999988999999999999999999999999
Q ss_pred ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHH
Q 014300 159 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 238 (427)
Q Consensus 159 k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~ 238 (427)
|+.||+||+|++|.+++|+++|.+++++|+|+++||++..+.+ ++.++|+|+||+|||||||+|++|+||||.||+||+
T Consensus 74 k~~if~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~ 152 (333)
T PRK00927 74 KSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHL 152 (333)
T ss_pred heEEEEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHH
Confidence 9999999999999999999999999999999999998764433 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 014300 239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318 (427)
Q Consensus 239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k 318 (427)
|||||||++||++|| .+|++|+++++.++++||||+++++|||||+|+++|+|+|+|+|++|++|||+
T Consensus 153 elaRdia~~~n~~~~------------~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~ 220 (333)
T PRK00927 153 ELTRDIARRFNNLYG------------EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK 220 (333)
T ss_pred HHHHHHHHHhhhhcc------------ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh
Confidence 999999999999998 56999999998766899999766679999998777999999999999999999
Q ss_pred ccCCCCC--CcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHH
Q 014300 319 CKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 394 (427)
Q Consensus 319 A~Td~~~--~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~ 394 (427)
|+||+.. ...++++++|++||++.||++|++.+++|++++|. +++|++||+.|++.|+++|+|+|+||+++++|++
T Consensus 221 a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~ 300 (333)
T PRK00927 221 AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPA 300 (333)
T ss_pred CCCCCCcccccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 9999976 45578899999999999999999999999999998 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 395 YLDKVLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 395 ~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
||++||++|++|||++|++||++||++|||.+
T Consensus 301 ~~~~il~~G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 301 YLDEILAEGAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999964
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-93 Score=722.27 Aligned_cols=334 Identities=36% Similarity=0.619 Sum_probs=305.4
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCC-CHHHHHHHHHHHHHHHHHcCcc
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGID 156 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~-~~~~l~~~~~~~~a~~lA~GiD 156 (427)
+.+|||||||||.+|||||+|++++|+++ |++++++|+||||||+|++. +++++++++++++++|+|||||
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~l--------q~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlD 73 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKL--------QHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVD 73 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHH--------hcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 35899999999999999999999999999 89999999999999999864 9999999999999999999999
Q ss_pred CCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhccccceEecccchH
Q 014300 157 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 235 (427)
Q Consensus 157 p~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~ 235 (427)
|+|++||+||++++|+||+|+|+|.+++++|+||+|||++....+ .++.++|+++||+|||||||+|++|+||||+||+
T Consensus 74 P~k~~if~QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~ 153 (398)
T PRK12283 74 PAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQV 153 (398)
T ss_pred ccceEEEECCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccH
Confidence 999999999999999999999999999999999999999876521 3578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCcccc---------------------------------------------------------
Q 014300 236 QHLELTRELAERVNYLYGGRKWK--------------------------------------------------------- 258 (427)
Q Consensus 236 qh~eLaRdiA~r~n~~yg~~~~~--------------------------------------------------------- 258 (427)
||+|||||||+|||+.||...+.
T Consensus 154 qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (398)
T PRK12283 154 PHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLF 233 (398)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhcccc
Confidence 99999999999999999852111
Q ss_pred -ccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCc
Q 014300 259 -KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPEC 337 (427)
Q Consensus 259 -k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev 337 (427)
-..+.++.+|++|+++++. +++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+.+...+++ ++|++
T Consensus 234 ~~~~~~~~~~~~~P~~~~~~-~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~~-g~Pe~ 306 (398)
T PRK12283 234 GYLEGAGKIILPEPQALLTE-ASKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTDP-GDPEK 306 (398)
T ss_pred ccccccCCcccCCCcccccC-CCcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCCC-CCCCc
Confidence 0123445679999999955 5899999 77 7999996 48999999999999999999999887555444 99999
Q ss_pred chHHHHHHhhCCC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 014300 338 NNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADAT 414 (427)
Q Consensus 338 ~nll~i~~~~t~~-~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL~~GaekAr~iA~~t 414 (427)
||+++||+++++. +.+++.++|+ +++||+||+.|+|.|+++|+|+|+||.++++|+++|++||++|++|||++|++|
T Consensus 307 ~nl~~i~~~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t 386 (398)
T PRK12283 307 CPVWQLHQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARET 386 (398)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877 5899999997 578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 014300 415 LNNVYQAMGFLR 426 (427)
Q Consensus 415 l~~Vr~a~G~~~ 426 (427)
|++||++|||.+
T Consensus 387 ~~~v~~~~g~~~ 398 (398)
T PRK12283 387 MRDVREAMGLSY 398 (398)
T ss_pred HHHHHHHhCCCC
Confidence 999999999963
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-91 Score=692.92 Aligned_cols=305 Identities=51% Similarity=0.810 Sum_probs=291.0
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccc-ceEEEEEeccceeccCCCH--HHHHHHHHHHHHHHHHc
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLAC 153 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~-~~~~i~IaDlhA~t~~~~~--~~l~~~~~~~~a~~lA~ 153 (427)
.+++||||+||||.+|||||+|+|++|+.+ |+. ++|||||||+||+|.+.++ +.+++++++++++||||
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~--------q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~ 75 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLL--------QEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAV 75 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHH--------hcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999 888 5999999999999998765 99999999999999999
Q ss_pred CccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccc
Q 014300 154 GIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 233 (427)
Q Consensus 154 GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~D 233 (427)
||||+|++||+||++++|.||+|+|+|.+++|||+||++||++..+.+ +++++|+|.||+|||||||+|++++||||.|
T Consensus 76 GiDP~k~~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~D 154 (314)
T COG0180 76 GLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGED 154 (314)
T ss_pred ccCccccEEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCC
Confidence 999999999999999999999999999999999999999999988765 6899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHH
Q 014300 234 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 313 (427)
Q Consensus 234 Q~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~ 313 (427)
|+||+|||||||+|||+.|| .+|++|+++++.. ++||||+|+ +|||||+|+ |+|+|+|+|++|+
T Consensus 155 Q~qHleLtRDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~ 218 (314)
T COG0180 155 QDQHLELTRDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIR 218 (314)
T ss_pred chHHHHHHHHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHH
Confidence 99999999999999999998 6799999999987 899999776 899999985 8999999999999
Q ss_pred HHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhC-CCCHHHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014300 314 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 390 (427)
Q Consensus 314 kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t-~~~~eel~~~y~~--l~~gdlK~~Lae~I~~~L~pirer~~~~~ 390 (427)
+||++|+||+...++++++++||+||+|.||.+|+ +++.+|++++|++ ++||+||+.|++.|+++|+|||+||+++.
T Consensus 219 kKI~~~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~ 298 (314)
T COG0180 219 KKIKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELR 298 (314)
T ss_pred HHHHHhccCCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996667788899999999999999999 9999999999985 99999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 014300 391 SDSAYLDKVLADGAAK 406 (427)
Q Consensus 391 ~d~~~l~~IL~~Gaek 406 (427)
++++|++++|++|++|
T Consensus 299 ~~~~~l~~il~~g~~k 314 (314)
T COG0180 299 EDPAYLDDILRKGAEK 314 (314)
T ss_pred hCHHHHHHHHhccCCC
Confidence 9999999999999874
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=6.3e-90 Score=693.15 Aligned_cols=323 Identities=34% Similarity=0.527 Sum_probs=304.1
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceecc-CCCHHHHHHHHHHHHHHHHHcCcc
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGID 156 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~lA~GiD 156 (427)
+.+||||+||||.+|||||+|+|++|+++ |+.++++|+||||||+|+ ..+++++++++++++++|+|||||
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~l--------Q~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~d 73 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVAL--------QNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGID 73 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHH--------HhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 46899999999999999999999999999 888889999999999997 679999999999999999999999
Q ss_pred CCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhccccceEecccchH
Q 014300 157 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 235 (427)
Q Consensus 157 p~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~ 235 (427)
|+|++||+||+|++|+++.|+++|.++++|++|+++||++....+ .++.++|+++||+||||||++|++|+||||+||+
T Consensus 74 p~k~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~ 153 (333)
T PRK12282 74 PAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQL 153 (333)
T ss_pred hhHeEEEECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccH
Confidence 999999999999999999999999999999999999998765443 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 014300 236 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 315 (427)
Q Consensus 236 qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 315 (427)
||+|||||||+|||++||+ ++|..|+++++. .++|||| +|.+|||||++ |+|+|+|+||+|++|
T Consensus 154 ~h~~laRdiA~~~n~~~~~-----------~~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kK 217 (333)
T PRK12282 154 PMIEQTREIVRRFNSLYGT-----------DVLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKK 217 (333)
T ss_pred HHHHHHHHHHHHHhhhcCC-----------ccccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHH
Confidence 9999999999999999985 568999998865 5899999 66689999984 699999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCCcchHHHHHHhh--CCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhc
Q 014300 316 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 391 (427)
Q Consensus 316 I~kA~Td~~~~~~~~~~~rpev~nll~i~~~~--t~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~~~~ 391 (427)
|++|+||+.. +.++++++|++||+++|+++| ++.++++++++|. +++++|||+.|++.|+++|+|+|+||+++++
T Consensus 218 I~~A~td~~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~ 296 (333)
T PRK12282 218 VMSMYTDPNH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAK 296 (333)
T ss_pred HHhCcCCCCC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999854 788899999999999999999 5789999999996 6899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014300 392 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425 (427)
Q Consensus 392 d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~ 425 (427)
|+++|++||+.|++|||++|++||++||++|||.
T Consensus 297 ~~~~~~~vl~~G~~ka~~~A~~~~~~v~~~~g~~ 330 (333)
T PRK12282 297 DPGYVLEILKAGSEKAREVAAQTLSEVKDAMGLN 330 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999995
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.8e-88 Score=681.78 Aligned_cols=319 Identities=47% Similarity=0.673 Sum_probs=299.5
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCC--CHHHHHHHHHHHHHHHHHcC
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACG 154 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~--~~~~l~~~~~~~~a~~lA~G 154 (427)
+++++||||+|||.+|||||+|++++|+.+ |++++++|+||||||+|++. +++.++.++++++++|+|||
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~--------q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~G 72 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQ--------QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVG 72 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHH--------hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 367999999999999999999999999988 89999999999999999866 88999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccch
Q 014300 155 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 234 (427)
Q Consensus 155 iDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ 234 (427)
|||+|++||+||+|++|++|.|+|+|.+|+++|+|+++||++.. .+++++|+|+||+|||||||+|++|+||||+||
T Consensus 73 lDp~k~~if~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ 149 (328)
T TIGR00233 73 LDPKKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQ 149 (328)
T ss_pred cChhheEEEEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeeccccc
Confidence 99999999999999999999999999999999999999998752 257899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 014300 235 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 314 (427)
Q Consensus 235 ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 314 (427)
+||+|||||||+|||++|| .+|++|++++++..++|||| +| +|||||+|+ |+|+|+|+|++|++
T Consensus 150 ~~h~elaRdia~r~n~~~~------------~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~ 213 (328)
T TIGR00233 150 DQHLELTRDLAERFNKKFK------------NFFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKK 213 (328)
T ss_pred HHHHHHHHHHHHHhhhhcC------------cccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHH
Confidence 9999999999999999998 57999999998867899999 45 799999974 89999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC-----CCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014300 315 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 315 KI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~-----~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~ 387 (427)
||++|+||+.+.+.++++++|+++|++.+|+++++ +++++++++|. +++|++||+.|++.|+++|+|+|+||+
T Consensus 214 KI~~a~td~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~ 293 (328)
T TIGR00233 214 KIRKAATDGGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRA 293 (328)
T ss_pred HHHhcCCCCCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999988888887753 45899999995 589999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014300 388 EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 424 (427)
Q Consensus 388 ~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~ 424 (427)
++++| +|+++|..|+++||++|++||++||++|||
T Consensus 294 ~~~~~--~~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 294 EIAEE--ILDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99987 999999999999999999999999999997
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.1e-74 Score=570.78 Aligned_cols=274 Identities=46% Similarity=0.754 Sum_probs=258.4
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCC-CHHHHHHHHHHHHHHHHHcCccC
Q 014300 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 80 ~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
++||||+|||.+|||||+|++++|+++ |+ +++++|+||||||+|++. +++++++++++++++|+|+|+||
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~l--------Q~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp 72 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWL--------QEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDP 72 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHH--------HhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 589999999999999999999999999 77 899999999999999987 99999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHH
Q 014300 158 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 237 (427)
Q Consensus 158 ~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh 237 (427)
+|++||+||++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||+||
T Consensus 73 ~k~~i~~qS~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h 150 (280)
T cd00806 73 EKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPH 150 (280)
T ss_pred ccCEEEEcCCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHH
Confidence 999999999999999999999999999999999999998663 368899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014300 238 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317 (427)
Q Consensus 238 ~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 317 (427)
+||+||+|+|||++|| .+|++|++++++ +++||||++|++|||||++ +|+|+|+|+|++|++|||
T Consensus 151 ~~l~Rdia~r~n~~~~------------~~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~ 215 (280)
T cd00806 151 LELTRDIARRFNKLYG------------EIFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIM 215 (280)
T ss_pred HHHHHHHHHHhccccc------------cccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHH
Confidence 9999999999999998 679999999985 5799999877789999987 599999999999999999
Q ss_pred hccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHH--HHHh--cCChhhHHHHHHHHHHHh
Q 014300 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQ--NMNWGTFKPLLTDALIEH 378 (427)
Q Consensus 318 kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~--~~y~--~l~~gdlK~~Lae~I~~~ 378 (427)
+|+||+.+.+.++.+++|+++|++.||++|++.+.++++ ++|+ ++++++||+.||+.|+++
T Consensus 216 ~a~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 216 KAATDGGRTEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred hccCCCCCceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 999999887889999999999999999999999888888 7775 799999999999999864
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-73 Score=578.69 Aligned_cols=286 Identities=28% Similarity=0.365 Sum_probs=262.8
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CCCHHHHHHHHHHHHHHHHHcC
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACG 154 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~lA~G 154 (427)
+++++|||++|||.||||||+ ++++|+.+ |+ +++++|+||||||+++ ..+++++++++++++++|+|||
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~-~~~~~~~l--------Q~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G 135 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKM-VFDELKWH--------QEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALG 135 (368)
T ss_pred CCeEEEEccCCCCCccHHHHH-HHHHHHHH--------HhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999998 57789988 77 6899999999999998 5799999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhc------cccceE
Q 014300 155 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFV 228 (427)
Q Consensus 155 iDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll------~~adlv 228 (427)
+||+|+.||+||++++|.++.|.++|.+++++++|+.+|+ ++.++|+++||+|||||||+ |++|+|
T Consensus 136 ~Dp~k~~i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lv 207 (368)
T PRK12285 136 FDPDKTEIYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLV 207 (368)
T ss_pred CCccceEEEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEE
Confidence 9999999999999999999999999999999999998886 46899999999999999999 889999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 014300 229 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 308 (427)
Q Consensus 229 pvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 308 (427)
|||+||+||+|||||||+|||+.|| |++|.+++++ ++|||+ | +|||||+| +|+|+|+|+
T Consensus 208 PvG~DQ~~h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~---~lpgL~-G-~KMSkS~~--~s~I~L~D~ 266 (368)
T PRK12285 208 PVGIDQDPHIRLTRDIAERLHGGYG--------------FIKPSSTYHK---FMPGLT-G-GKMSSSKP--ESAIYLTDD 266 (368)
T ss_pred EeccchHHHHHHHHHHHHHHhhhcC--------------CCCchhHhhh---cccCCC-C-CcCCCCCC--CCeeeccCC
Confidence 9999999999999999999999998 8999999975 999995 5 69999997 599999999
Q ss_pred HHHHHHHhhhccCCCCCCcccCC--CCCCCcchHHHHHHhhC---CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhH
Q 014300 309 KDVIANKIKRCKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 381 (427)
Q Consensus 309 pe~I~kKI~kA~Td~~~~~~~~~--~~rpev~nll~i~~~~t---~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~p 381 (427)
|++|++||++|+||+..++++++ +++|++|++++|+.+|. +++++|++++|. +++|++||+.|++.|+++|+|
T Consensus 267 p~~I~kKI~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~ 346 (368)
T PRK12285 267 PETVKKKIMKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKE 346 (368)
T ss_pred HHHHHHHHHhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876543 68899999999999875 578999999996 489999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH
Q 014300 382 IQVRYEEIMSDSAYLDKVLADG 403 (427)
Q Consensus 382 irer~~~~~~d~~~l~~IL~~G 403 (427)
+|+||+++.. .|++.+..+
T Consensus 347 ~~er~~~~~~---~~~~~~~~~ 365 (368)
T PRK12285 347 HQEKREEARE---ILEKYLYDG 365 (368)
T ss_pred HHHHHHHHHH---HHHHhhccc
Confidence 9999998864 566665443
No 12
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-69 Score=551.12 Aligned_cols=269 Identities=24% Similarity=0.368 Sum_probs=238.8
Q ss_pred CCCceEEEecCCCCcchhhhhHHHHH--HHHHhcccccccccc-cceEEEEEeccceeccC---CCHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAI 149 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylgaik--~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~l~~~~~~~~a~ 149 (427)
.++++||+||+|||.+|||| |+|+ +|+++ |+ +++++|+||||||++++ .+++++++++++++++
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~l--------q~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~ 133 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNKL--------TKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEV 133 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHHH--------HhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999 5555 78888 77 79999999999999984 5899999999999999
Q ss_pred HHHcCccCCceEEEEcCC-cchhhHHHHHHhcc----ccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccc
Q 014300 150 YLACGIDNSKASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 224 (427)
Q Consensus 150 ~lA~GiDp~k~~if~QS~-v~~~~eL~w~L~~~----t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~ 224 (427)
|+|+|+||+|++||+||+ +++|++++|++.+. +++++++|+.+++++.. .++.++|+|+||+||||||++|+
T Consensus 134 ~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~ 210 (383)
T PTZ00126 134 WKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLK 210 (383)
T ss_pred HHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccC
Confidence 999999999999999998 67999999998875 49999999999986432 25679999999999999999999
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014300 225 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 225 adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
+|+||||.||+||+|||||+|++||+. ++|..++. ++||||+||++|||||+| +++|+
T Consensus 211 adivpvG~DQ~~~~~LaRdia~~~~~~-----------------~~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~ 268 (383)
T PTZ00126 211 ADICQLGMDQRKVNMLAREYCDKKKIK-----------------KKPIILSH---HMLPGLLEGQEKMSKSDP--NSAIF 268 (383)
T ss_pred CCEEEeCccHHHHHHHHHHHHHHhCCC-----------------CCceeecc---cccccCCCCCCCCCcCCC--CCeec
Confidence 999999999999999999999999853 24555443 599999888899999997 48999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhC--------------------CCCHHHHHHHHh--cC
Q 014300 305 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQ--NM 362 (427)
Q Consensus 305 L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t--------------------~~~~eel~~~y~--~l 362 (427)
|+|+|++|++|||+|+||+ +.++.||++.|++++. +.++++++++|. .+
T Consensus 269 L~Dspe~I~kKI~kA~t~p---------~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l 339 (383)
T PTZ00126 269 MEDSEEDVNRKIKKAYCPP---------GVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGAL 339 (383)
T ss_pred CCCCHHHHHHHHHhCcCCC---------CCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCC
Confidence 9999999999999999964 4677889999998642 258999999997 58
Q ss_pred ChhhHHHHHHHHHHHhhhHHHHHHHH
Q 014300 363 NWGTFKPLLTDALIEHLHPIQVRYEE 388 (427)
Q Consensus 363 ~~gdlK~~Lae~I~~~L~pirer~~~ 388 (427)
+|++||++||++|+++|+|||++|+.
T Consensus 340 ~p~dlK~~lae~i~~~L~PIRe~~~~ 365 (383)
T PTZ00126 340 HPGDLKPALAKYLNLMLQPVRDHFQN 365 (383)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999974
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.7e-69 Score=542.38 Aligned_cols=268 Identities=26% Similarity=0.378 Sum_probs=241.4
Q ss_pred CCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccC-CCHHHHHHHHHHHHHHHHHc
Q 014300 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLAC 153 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~-~~~~~l~~~~~~~~a~~lA~ 153 (427)
.+++++||||+|||.+|||||+ ++++|+++ |+ +++++|+||||||++++ .+++++++++++++++|+||
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~l--------q~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~ 98 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLL-TMNKLADL--------QKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEAL 98 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhH-HHHHHHHH--------HHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3578999999999999999976 78889999 88 89999999999999985 69999999999999999999
Q ss_pred CccCCceEEEEcCCcchhhH---HHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEec
Q 014300 154 GIDNSKASVFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 230 (427)
Q Consensus 154 GiDp~k~~if~QS~v~~~~e---L~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpv 230 (427)
|+||+|++||+||+|++|.+ +.|.|+|.++++++.|+.+++.+ . . ++.++|+|+||+|||||||+|++|+|||
T Consensus 99 G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpv 174 (329)
T PRK08560 99 GLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVG 174 (329)
T ss_pred CCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEe
Confidence 99999999999999998875 34449999999999999998742 2 1 3459999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 014300 231 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 310 (427)
Q Consensus 231 G~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe 310 (427)
|.||+||+|||||||++|| +++|.+++.+ +||||+++++|||||+| +|+|+|+|+|+
T Consensus 175 G~DQ~~h~~l~Rdia~~~n------------------~~~p~~l~~~---~l~~L~g~~~KMSKS~p--~~~I~L~D~~~ 231 (329)
T PRK08560 175 GMDQRKIHMLAREVLPKLG------------------YKKPVCIHTP---LLTGLDGGGIKMSKSKP--GSAIFVHDSPE 231 (329)
T ss_pred chhHHHHHHHHHHhhHhcC------------------CCCceEEEcC---ccCCCCCCCCCCcCCCC--CCeecccCCHH
Confidence 9999999999999999998 3468888754 99999766679999997 59999999999
Q ss_pred HHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC--------------------CCHHHHHHHHh--cCChhhHH
Q 014300 311 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFK 368 (427)
Q Consensus 311 ~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~--------------------~~~eel~~~y~--~l~~gdlK 368 (427)
+|++|||+|+||+ +.|+.||+++|++++.. .+++|++++|. .++|++||
T Consensus 232 ~I~~KI~kA~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK 302 (329)
T PRK08560 232 EIRRKIKKAYCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLK 302 (329)
T ss_pred HHHHHHHhccCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHH
Confidence 9999999999975 56889999999998742 57899999997 47899999
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 014300 369 PLLTDALIEHLHPIQVRYEE 388 (427)
Q Consensus 369 ~~Lae~I~~~L~pirer~~~ 388 (427)
+.||++|+++|+|||++|++
T Consensus 303 ~~la~~i~~~l~pir~~~~~ 322 (329)
T PRK08560 303 NAVAEYLIEILEPVREYLEE 322 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999985
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-65 Score=553.55 Aligned_cols=281 Identities=23% Similarity=0.358 Sum_probs=247.8
Q ss_pred CCceEEEecCCCCcchhhh-hHHHHHHHHHhcccccccccccceEEEEEeccceeccC---CCHHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLA 152 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGn-ylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~---~~~~~l~~~~~~~~a~~lA 152 (427)
.++++||||+|||.+|||| ++++++.|..+ |++++++||||||||+|++ .++++++.++++++++|+|
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~--------q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA 102 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCT--------QAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKA 102 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHH--------hCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999 57788877776 8999999999999999974 3889999999999999999
Q ss_pred cCccCCceEEEEcCC-cchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC--CCCcccccchhhHHHHhhhhccccceEe
Q 014300 153 CGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVP 229 (427)
Q Consensus 153 ~GiDp~k~~if~QS~-v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~--~~~~~~g~l~YPvLQAADIll~~adlvp 229 (427)
+|+||+|++||+||+ +++|++++|++ .++++++.++.++|++....+ .+++++|+++||+|||||||+|++|+||
T Consensus 103 ~GlDpeK~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivp 180 (682)
T PTZ00348 103 AGMDMDKVLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQ 180 (682)
T ss_pred cCCCccceEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEE
Confidence 999999999999998 88999999999 588999999999998654332 2357999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014300 230 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 309 (427)
Q Consensus 230 vG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dsp 309 (427)
||.||+||+|||||+|++||+.+ +|..+.. ++||||+||++|||||+| +|+|+|+|+|
T Consensus 181 vG~DQ~qh~eLaRdia~~~g~~~-----------------kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dsp 238 (682)
T PTZ00348 181 LGLDQRKVNMLAREYCDLIGRKL-----------------KPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTE 238 (682)
T ss_pred eCccHHHHHHHHHHHHHHhCCCC-----------------Cceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCH
Confidence 99999999999999999987422 3443333 599999878789999997 4999999999
Q ss_pred HHHHHHhhhccCCCCC--CcccCCCCCC----CcchHHHHHHhhC-----------C---CCHHHHHHHHh--cCChhhH
Q 014300 310 DVIANKIKRCKTDSSA--GLEFDNLERP----ECNNLLSIYQLIS-----------G---KTKGEVAEECQ--NMNWGTF 367 (427)
Q Consensus 310 e~I~kKI~kA~Td~~~--~~~~~~~~rp----ev~nll~i~~~~t-----------~---~~~eel~~~y~--~l~~gdl 367 (427)
++|++||++|+||+.+ .++..++++| +.||+|+||+++. + +++++++++|. +++|++|
T Consensus 239 e~I~kKI~kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dl 318 (682)
T PTZ00348 239 EDVARKIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEAL 318 (682)
T ss_pred HHHHHHHHhCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHH
Confidence 9999999999999863 4666778888 8899999999873 1 67899999996 5899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 014300 368 KPLLTDALIEHLHPIQVRYEEI 389 (427)
Q Consensus 368 K~~Lae~I~~~L~pirer~~~~ 389 (427)
|+.|+++|+++|+|||++|++.
T Consensus 319 K~~lae~l~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 319 KSCLIDEVNALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999854
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.7e-60 Score=483.59 Aligned_cols=276 Identities=19% Similarity=0.254 Sum_probs=237.6
Q ss_pred CCCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc--cceEEEEEeccceeccC-CCHHHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYL 151 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~l~~~~~~~~a~~l 151 (427)
.+++++|+|++|||. |||||+++.++ + +|+|+ ++.++|+|||+|+++.+ .+++++++++++++++|+
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~~----~-----~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~ii 141 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFMF----T-----KYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDII 141 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHHH----H-----HHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 347899999999995 99999996553 3 34587 47899999999999984 599999999999999999
Q ss_pred HcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhh------ccc
Q 014300 152 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQ 224 (427)
Q Consensus 152 A~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl------l~~ 224 (427)
|+|+||+|+.||.|+++ +.+++|.... ++.|+.+++++.+.+| .++.++|+++||+||||||| +++
T Consensus 142 A~G~dp~kt~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~ 214 (383)
T PLN02486 142 ACGFDVERTFIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFG 214 (383)
T ss_pred HhCCCCcceEEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhC
Confidence 99999999999966554 4455555432 5788999998887776 46789999999999999998 455
Q ss_pred c-----ceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 225 S-----DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 225 a-----dlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
. |+||||.||+||++||||+|+||| +.+|..+++ .++|||+++.+|||||+|
T Consensus 215 ~~~~~~~lVPvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~---~~lp~L~g~~~KMSkS~~-- 271 (383)
T PLN02486 215 GKDKLRCLIPCAIDQDPYFRMTRDVAPRLG------------------YYKPALIES---RFFPALQGESGKMSASDP-- 271 (383)
T ss_pred CCcCCcceeecccchHHHHHHHHHHHHHhC------------------CCCcceecc---ccccCCCCCCCcCcCcCC--
Confidence 4 899999999999999999999998 346877765 499999877789999997
Q ss_pred CceeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHHHHHH
Q 014300 300 QSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLT 372 (427)
Q Consensus 300 ~s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~--~~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK~~La 372 (427)
+|+|+|+|+|++|++||++ |+||+..+++. ..+++|++|++++|+.+|. +++++|++++|. +++|++||+.|+
T Consensus 272 nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~la 351 (383)
T PLN02486 272 NSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLI 351 (383)
T ss_pred CCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHH
Confidence 4899999999999999999 99999987765 3468999999999999995 357899999996 589999999999
Q ss_pred HHHHHhhhHHHHHHHHHh
Q 014300 373 DALIEHLHPIQVRYEEIM 390 (427)
Q Consensus 373 e~I~~~L~pirer~~~~~ 390 (427)
+.|+++|+|+|+|++++.
T Consensus 352 e~i~~~l~~~qerr~~~~ 369 (383)
T PLN02486 352 EVLTEIVERHQRARAAVT 369 (383)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=2e-60 Score=470.99 Aligned_cols=275 Identities=35% Similarity=0.529 Sum_probs=245.3
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEEEeccceeccCC---CHHHHHHHHHHHHHH--H
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--Y 150 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~IaDlhA~t~~~---~~~~l~~~~~~~~a~--~ 150 (427)
+++++|+||+|||.|||| |++++.+|+++ | .+++++|+||||||++++. +++.++.++.+++.+ |
T Consensus 4 ~~~~~y~G~~PTg~lHlG-~l~~~~~~~~l--------q~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLG-HLVPIMKLIWL--------QKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAI 74 (292)
T ss_dssp SSEEEEEEEESSSS-BHH-HHHHHHHHHHH--------HHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeECCCCcccch-HHHHHHHHHHH--------HhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHH
Confidence 578999999999999999 56788999999 7 5899999999999999854 599999999999999 9
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhccccceEe
Q 014300 151 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVP 229 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll~~adlvp 229 (427)
+|+|+||+++.||+||+|+++.++.|.+.+..+.++++|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||
T Consensus 75 la~g~d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~ 154 (292)
T PF00579_consen 75 LALGLDPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVP 154 (292)
T ss_dssp HHTTSHTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEE
T ss_pred HHhccCccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeecccccc
Confidence 999999999999999999999999999999999999999999998666655 3578999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014300 230 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 309 (427)
Q Consensus 230 vG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dsp 309 (427)
||.||++|++++||+|+|+|++. .|++|..++++ ++|+| +|.+|||||+++ ++|+|+|++
T Consensus 155 ~G~DQ~~~~~l~rd~a~k~~~~~--------------~~~~p~~l~~~---~l~~l-~G~~KMSKS~~n--s~I~L~d~~ 214 (292)
T PF00579_consen 155 GGIDQRGHIELARDLARKFNYKE--------------IFPKPAGLTSP---LLPGL-DGQKKMSKSDPN--SAIFLDDSP 214 (292)
T ss_dssp EEGGGHHHHHHHHHHHHHHTHHS--------------TSSS-EEEEET---CBBST-TSSSBTTTTTTG--GS-BTTTTH
T ss_pred ccchHHHHHHHHHHHHhhhcccc--------------cccCchheeec---ccccc-CCccccCccCCc--cEEEEeccc
Confidence 99999999999999999999762 38899999987 99999 676799999974 799999999
Q ss_pred HHHHHHhhhccCCCCCCcccCCCCCCCcch-HHHHHHhhCC----CCHHHHHHHHh--cCChhhHHHHHHHHHHHhhh
Q 014300 310 DVIANKIKRCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 380 (427)
Q Consensus 310 e~I~kKI~kA~Td~~~~~~~~~~~rpev~n-ll~i~~~~t~----~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~ 380 (427)
++|++||++|+|++.+.+......+|.+++ ++.++..+.+ .+++++.++|. .+|++++|++++++++++|+
T Consensus 215 ~~i~~Ki~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 215 EEIRKKIKKAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHHHHHHHHSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 999999999999998765555667788888 8888887653 35799999997 47999999999999999885
No 17
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.8e-58 Score=454.03 Aligned_cols=248 Identities=26% Similarity=0.403 Sum_probs=222.7
Q ss_pred eEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCC----------CHHHHHHHHHHHH
Q 014300 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETA 147 (427)
Q Consensus 80 ~i~sGi~PTG-~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~----------~~~~l~~~~~~~~ 147 (427)
.+|+||+||| .+|||||+| +++|+.+ |+ +++++|+|||+||+++.. +++++++++.+++
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~l--------q~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~ 71 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRF--------QHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIA 71 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHH--------HHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHH
Confidence 4899999999 699999998 8889999 77 899999999999999843 7999999999999
Q ss_pred HHHHHcCcc--CCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhc
Q 014300 148 AIYLACGID--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL 222 (427)
Q Consensus 148 a~~lA~GiD--p~k~~if~QS~v~---~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll 222 (427)
++|+|+|+| |+|++||.||+|+ +|.++.|.+++.+++++|.|+.+||++. . +++++|+|+||+||||||++
T Consensus 72 ~~~~a~g~d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~ 147 (273)
T cd00395 72 AQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLL 147 (273)
T ss_pred HHHHHhcCcCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHH
Confidence 999999999 9999999999999 8999999999999999999999999764 1 56899999999999999999
Q ss_pred ccc----ceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014300 223 YQS----DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 298 (427)
Q Consensus 223 ~~a----dlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 298 (427)
+++ |+||||.||+||++++||+|+|||. |+.|..++.+ +|||| +| .|||||+++
T Consensus 148 l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p---~l~~l-~G-~KMSKS~~~ 205 (273)
T cd00395 148 LNTTEGCDIQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIP---LVTKL-DG-PKFGKSESG 205 (273)
T ss_pred HhcccCCcEEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeec---cccCC-CC-CcCCCCCCC
Confidence 988 9999999999999999999999982 6778888875 99999 56 399999864
Q ss_pred CCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHH----HHhcCChhhHHHHHHHH
Q 014300 299 DQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDA 374 (427)
Q Consensus 299 ~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~----~y~~l~~gdlK~~Lae~ 374 (427)
.-..|+++|+|++|++||++|+. ++++.|+++|++.+.+||++ .|++.+++++|+.||+.
T Consensus 206 ~i~l~~~~dsp~~i~~ki~~a~d----------------~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~ 269 (273)
T cd00395 206 PKWLDTEKTSPYEFYQFWINAVD----------------SDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEE 269 (273)
T ss_pred CccccccCCCHHHHHHHHHcccH----------------hHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22235579999999999999983 68999999999988888877 55667889999999999
Q ss_pred HHHh
Q 014300 375 LIEH 378 (427)
Q Consensus 375 I~~~ 378 (427)
|+++
T Consensus 270 i~~~ 273 (273)
T cd00395 270 VTKT 273 (273)
T ss_pred HHhC
Confidence 9863
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.3e-59 Score=455.53 Aligned_cols=249 Identities=23% Similarity=0.272 Sum_probs=220.8
Q ss_pred ceEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-C---------CCHHHHHHHHHHH
Q 014300 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRET 146 (427)
Q Consensus 79 ~~i~sGi~PTG-~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~l~~~~~~~ 146 (427)
.++|+||+||| .+|||||++++ +|+.+ |+ +++++|+|||+||+++ + .++++++++++++
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~-~~~~l--------q~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~ 71 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLM-KLRDF--------QQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYY 71 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHH-HHHHH--------HHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHH
Confidence 37999999999 89999999754 79988 77 8999999999999997 5 5899999999999
Q ss_pred HHHHHHcCcc--CCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhh
Q 014300 147 AAIYLACGID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 220 (427)
Q Consensus 147 ~a~~lA~GiD--p~k~~if~QS~v~~~~eL~w~----L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADI 220 (427)
.++|+|+|+| |+|++||+||+|++| ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||
T Consensus 72 ~~~~~a~g~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi 147 (269)
T cd00805 72 KKQLKAILDFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDF 147 (269)
T ss_pred HHHHHHHHccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhH
Confidence 9999999997 999999999999998 7787 9999999999999999976532 2678999999999999999
Q ss_pred hccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014300 221 LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 221 ll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
+++++|+||||.||++|++++||+|+|||+ ..|..+.. ++||+| +| .|||||.++
T Consensus 148 ~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~-- 202 (269)
T cd00805 148 VYLDVDLQLGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGN-- 202 (269)
T ss_pred HHHhCCeeEecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCC--
Confidence 999999999999999999999999999973 23445544 499999 56 599999874
Q ss_pred ce-eecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChhhHHHHHHHHHHHh
Q 014300 301 SR-INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 378 (427)
Q Consensus 301 s~-I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~gdlK~~Lae~I~~~ 378 (427)
+. |++.|+|++|++||++|+|| ++.+++.++.++++++++|++++|. +..++++|+.||++|+++
T Consensus 203 ~~~i~l~dsp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 203 AIWDPVLDSPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred cccccCCCCHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 44 79999999999999999996 4678888888888899999999997 333999999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.2e-50 Score=414.29 Aligned_cols=258 Identities=20% Similarity=0.231 Sum_probs=219.9
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 144 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~ 144 (427)
.++++|+||+|||. +|||||+ ++.+|..+ |+ +++++++||||||+++ |. +.+.+++++.
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv-~l~~l~~l--------Q~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~ 102 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLV-PLLKLRRF--------QDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAE 102 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHH-HHHHHHHH--------HHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHH
Confidence 56899999999995 9999999 57789988 77 6999999999999996 42 5678888887
Q ss_pred HHHHHHHHcCccCCc--eEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhh
Q 014300 145 ETAAIYLACGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 219 (427)
Q Consensus 145 ~~~a~~lA~GiDp~k--~~if~QS~v~~~~eL~w~L~---~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAAD 219 (427)
++ ...+|+|+||++ ++||+||+|+++.++.|+|. +.+++++|.++.+||++... .+++++|+|+||+|||||
T Consensus 103 ~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D 179 (408)
T PRK05912 103 TI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYD 179 (408)
T ss_pred HH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhh
Confidence 65 445699999999 99999999999999999877 88899999998889865421 257899999999999999
Q ss_pred hhcc----ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014300 220 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 295 (427)
Q Consensus 220 Ill~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS 295 (427)
++++ ++|++|||.||++|++++||+|+|||.. .+..+.. +.|+++ +| +|||||
T Consensus 180 ~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS 236 (408)
T PRK05912 180 FVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKS 236 (408)
T ss_pred HHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCC
Confidence 9999 9999999999999999999999999831 1223332 589998 67 799999
Q ss_pred CCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChhhHHHHH
Q 014300 296 APSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLL 371 (427)
Q Consensus 296 ~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~gdlK~~L 371 (427)
. +|+|+|+| +|++|++||+++ + ++++.+++.+|.+++.+++++++++|. +.+++++|+.|
T Consensus 237 ~---~naI~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~L 300 (408)
T PRK05912 237 E---GNAVWLDEEKTSPYEMYQKWMNI-S------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVL 300 (408)
T ss_pred C---CCceeCCCCCCCHHHHHHHHhcC-C------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 7 68999999 999999999985 2 345677777777777888999999994 56999999999
Q ss_pred HHHHHHhhhHHHHH
Q 014300 372 TDALIEHLHPIQVR 385 (427)
Q Consensus 372 ae~I~~~L~pirer 385 (427)
|+.|+++++...+.
T Consensus 301 A~~v~~~lhg~~~~ 314 (408)
T PRK05912 301 AEEITALVHGEEAA 314 (408)
T ss_pred HHHHHHHHCCHHHH
Confidence 99999999987543
No 20
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-47 Score=368.67 Aligned_cols=269 Identities=24% Similarity=0.254 Sum_probs=220.7
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccC--CCHHHHHHHHHHHHHHHH-Hc
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL-AC 153 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~--~~~~~l~~~~~~~~a~~l-A~ 153 (427)
+.+.||||+.|||+||+|.++.++ ++.++ +..||+|.|++|||||++++ ..++.+..++.|+-..+. |.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm~-kiadf-------lkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l 104 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPMM-KIADF-------LKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAAL 104 (360)
T ss_pred cCceeeecCCCCCCcceeeeeehh-HHHHH-------HhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999976444 44444 57899999999999999984 466777667765554443 33
Q ss_pred ---CccCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccce
Q 014300 154 ---GIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 227 (427)
Q Consensus 154 ---GiDp~k~~if~QS~v~---~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adl 227 (427)
+++.++..|...|+++ +++-..+.++..++-..+++... . ..++ .+++.++.++||.|||+|++++++|.
T Consensus 105 ~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga-e-vvkq--ve~plls~llYP~MQalDe~~L~vD~ 180 (360)
T KOG2144|consen 105 GSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA-E-VVKQ--VENPLLSGLLYPGMQALDEFYLEVDA 180 (360)
T ss_pred hhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh-h-HHHh--hcchhhhhhhhhhHHHhhHHHHhhhH
Confidence 5667788888888875 45666677777776655554433 2 2222 37889999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014300 228 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 307 (427)
Q Consensus 228 vpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 307 (427)
+++|.|||..+.|||+++..++ +++|.+++++ +||||+.| +|||||+|+ |.|+|.|
T Consensus 181 qfgGvDQRKIf~~A~eylp~l~------------------ykKrihLmnp---MvPGL~q~-~KMSsSd~~--SkIdllD 236 (360)
T KOG2144|consen 181 QFGGVDQRKIFVLAEEYLPDLG------------------YKKRIHLMNP---MVPGLAQG-EKMSSSDPL--SKIDLLD 236 (360)
T ss_pred HhcCccHHHHHHHHHHhhhhhC------------------cccceeecCC---CCcccccc-CccccCCcc--ccccccc
Confidence 9999999999999999999987 3567788876 99999754 799999985 9999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhh-----------------------CCCCHHHHHHHHh--cC
Q 014300 308 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEECQ--NM 362 (427)
Q Consensus 308 spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~-----------------------t~~~~eel~~~y~--~l 362 (427)
+|++|.+||++||| +|+..+.|+++++.+++ +++++||++++|. .+
T Consensus 237 ~~~~V~kKI~kAfC---------ePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~l 307 (360)
T KOG2144|consen 237 EPADVNKKIKKAFC---------EPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGEL 307 (360)
T ss_pred CHHHHHHHHHHhcC---------CCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCc
Confidence 99999999999999 56778889999998874 4568999999997 69
Q ss_pred ChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014300 363 NWGTFKPLLTDALIEHLHPIQVRYEEIM 390 (427)
Q Consensus 363 ~~gdlK~~Lae~I~~~L~pirer~~~~~ 390 (427)
||+|||+.|+.+|+++|+|||+.++..-
T Consensus 308 hPgDLK~~l~~alN~lL~~ir~~~~~~~ 335 (360)
T KOG2144|consen 308 HPGDLKKGLEKALNELLQPIREEFSNWP 335 (360)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999887543
No 21
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.6e-47 Score=389.18 Aligned_cols=260 Identities=17% Similarity=0.208 Sum_probs=213.9
Q ss_pred CCCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-C---------CCHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKAT 143 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~l~~~~ 143 (427)
.+++++|+||+|||. +||||++ ++.+|..+ |+ +++++++|+|+||+++ | .+.+++++|+
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv-~l~~l~~l--------q~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~ 101 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLV-PLMKLKRF--------QDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNA 101 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHH-HHHHHHHH--------HHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHH
Confidence 357899999999995 9999976 56678888 66 6999999999999986 3 2567899999
Q ss_pred HHHHHHHHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhc
Q 014300 144 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL 222 (427)
Q Consensus 144 ~~~~a~~lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll 222 (427)
.++.+.+.+ |+||++++||+||+|+++.++.|+|.+..+...++||.++++...+.. .+++++|+|+||+|||+|+++
T Consensus 102 ~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~ 180 (410)
T PRK13354 102 KTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVH 180 (410)
T ss_pred HHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHH
Confidence 988888766 999999999999999998888888765555555666666655444443 356899999999999999999
Q ss_pred c----ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014300 223 Y----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 298 (427)
Q Consensus 223 ~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 298 (427)
+ ++|++|||.||++|++++||+|+|+|.. .|..+.. +.|+|+ ||+ |||||.
T Consensus 181 l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~-- 235 (410)
T PRK13354 181 LNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA-- 235 (410)
T ss_pred HhccCCCCEEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC--
Confidence 9 9999999999999999999999999843 2334433 489998 675 999996
Q ss_pred CCceeecCCC---HHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC---CCHHHHHHHHh-cCChhhHHHHH
Q 014300 299 DQSRINLLDP---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG---KTKGEVAEECQ-NMNWGTFKPLL 371 (427)
Q Consensus 299 ~~s~I~L~Ds---pe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~---~~~eel~~~y~-~l~~gdlK~~L 371 (427)
+|+|+|+|+ |+++++||+++ +| ++++.|+.+|++ +++++++++|. +.+++++|+.|
T Consensus 236 -~naI~L~d~~tsp~~i~qki~~~-~D---------------~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~L 298 (410)
T PRK13354 236 -GGAIWLDPEKTSPYEFYQFWMNI-DD---------------RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVL 298 (410)
T ss_pred -CCceeccCCCCCHHHHHHHHHcC-Ch---------------HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 589999999 99999999986 21 456777777764 67888888997 35699999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 014300 372 TDALIEHLHPIQVRYE 387 (427)
Q Consensus 372 ae~I~~~L~pirer~~ 387 (427)
|+.|+++++..++..+
T Consensus 299 A~~v~~~vhg~~~~~~ 314 (410)
T PRK13354 299 AEEITKFVHGEEAAEE 314 (410)
T ss_pred HHHHHHHHCCHHHHHH
Confidence 9999999999876443
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.3e-42 Score=355.33 Aligned_cols=250 Identities=20% Similarity=0.228 Sum_probs=194.6
Q ss_pred CceEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHHHH
Q 014300 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRE 145 (427)
Q Consensus 78 ~~~i~sGi~PTG-~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~~ 145 (427)
++++|+||+||| .+|||||++ +.+|..+ |+ |++++++|||+||+++ |. +.+++++|+ +
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~l--------q~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~ 99 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDF--------QQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-E 99 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHH--------HHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-H
Confidence 689999999999 799999996 5678888 66 7999999999999997 43 345555566 6
Q ss_pred HHHHHHHcCccCCceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhc
Q 014300 146 TAAIYLACGIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL 222 (427)
Q Consensus 146 ~~a~~lA~GiDp~k~~if~QS~v~~---~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll 222 (427)
+++.++|+|+||++++|++||+|.. +.++.|.+++.++++++.+..+++... . +++++++|+||+|||+|+++
T Consensus 100 ~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~--~--~~is~~ef~YpllQa~D~~~ 175 (377)
T TIGR00234 100 NIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL--E--RGISLSEFIYPLLQAYDFVY 175 (377)
T ss_pred HHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH--h--cCCCchhhhhHHHHHHHHHH
Confidence 7888999999999999999999864 677888899999999999999998532 2 45899999999999999999
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
+++|++|||.||++|++.+|++|+++|... .|.+|.+++++.....||.++| .|||.|.+-..++
T Consensus 176 l~~di~~gG~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~~~dg~KmgKS~~-~~i~l~~~~~~~~ 240 (377)
T TIGR00234 176 LNVDLQIGGSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLTPADGEKMGKSGG-GAVSLDEGKYDFY 240 (377)
T ss_pred HcCCeeEecchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeecCCCCCCccCCCC-CcccCCccHhhhh
Confidence 999999999999999999999999998543 2666666654421223333222 2333333201388
Q ss_pred eecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhH
Q 014300 303 INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 381 (427)
Q Consensus 303 I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~p 381 (427)
|++.|+||++.+||++++|+... ++++++.+ ..+.++.+.|+.+|..|+++++.
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~~------------------------~ei~~l~~-~~~~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLGL------------------------EEIEALVE-LKGPSPREVKENLAKEITKYVHG 294 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCcH------------------------HHHHHHHH-hcccCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999996421 22333422 23456778888888888877764
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-42 Score=334.24 Aligned_cols=276 Identities=20% Similarity=0.282 Sum_probs=241.8
Q ss_pred CCceEEEecCCC-CcchhhhhHHHHHHHHHhcccccccccccce--EEEEEeccceeccC-CCHHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQPFCDLMLQNSYE--TLFFIVDLHAITLP-YDTQQLSKATRETAAIYLA 152 (427)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylgaik~~~~l~~~~~~~~Q~~~~--~~i~IaDlhA~t~~-~~~~~l~~~~~~~~a~~lA 152 (427)
+|+++|||..|| +.|||||.+ |++.. ||+|+.++ .+|.+.|.+.++-. -..++..+.+++++.+++|
T Consensus 84 kpFyLYTGRGpSS~smHlGHli----PFift-----KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia 154 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLI----PFIFT-----KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIA 154 (397)
T ss_pred CceEEEeCCCCCccccccccch----hHHHH-----HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEE
Confidence 579999999999 569999988 77777 89999876 69999999999864 4789999999999999999
Q ss_pred cCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhccc-------
Q 014300 153 CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQ------- 224 (427)
Q Consensus 153 ~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll~~------- 224 (427)
+|+||+|+.||.+.++..-.- ..-++-++.++.++++....+| +++.++|.+.+|..|||..+...
T Consensus 155 ~GFDp~kTfIFsn~~y~g~~~------fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~ 228 (397)
T KOG2145|consen 155 VGFDPKKTFIFSNLDYMGGPA------FYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGG 228 (397)
T ss_pred eccCCcceEEEechhhccCcH------HHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCC
Confidence 999999999999999753210 1123445678888887777777 67889999999999999998741
Q ss_pred ----cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014300 225 ----SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 225 ----adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
+|++|+.+||++++++|||+|+|++ +++|..+++. ++|.|++.+.|||.|+|+
T Consensus 229 ~~~~~CLiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~st---ffpaLqG~~~KMSASdpn-- 285 (397)
T KOG2145|consen 229 RDDIPCLIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHST---FFPALQGAQTKMSASDPN-- 285 (397)
T ss_pred CcCCceeceeeccCChHHHhhhhhhhhhC------------------CCCcceeehh---hchhhhCcccccccCCCC--
Confidence 6899999999999999999999965 7899888875 999999889999999984
Q ss_pred ceeecCCCHHHHHHHhhh-ccCCCCCCcccCCC--CCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHHHHHHH
Q 014300 301 SRINLLDPKDVIANKIKR-CKTDSSAGLEFDNL--ERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTD 373 (427)
Q Consensus 301 s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~~~~--~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK~~Lae 373 (427)
++|||+|++++|++||.+ |+++++.+++.+++ ++|+|+.-+.|+++|- +...|++..+|. ++..||+|+.+.+
T Consensus 286 s~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ie 365 (397)
T KOG2145|consen 286 SAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIE 365 (397)
T ss_pred ceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHH
Confidence 999999999999999988 99999999998775 8999999999999884 457899999995 7999999999999
Q ss_pred HHHHhhhHHHHHHHHHh
Q 014300 374 ALIEHLHPIQVRYEEIM 390 (427)
Q Consensus 374 ~I~~~L~pirer~~~~~ 390 (427)
.|.+++..+|++++++.
T Consensus 366 vLq~~V~~hQa~Rk~Vt 382 (397)
T KOG2145|consen 366 VLQEFVSRHQAARKEVT 382 (397)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999876
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-40 Score=355.32 Aligned_cols=228 Identities=14% Similarity=0.182 Sum_probs=198.3
Q ss_pred cccceEEEEEeccceeccC---CCHHHHHHHHHHHHHHHHHcCccCCceEEEEcCCcch-hhHHHHH----HhccccHHH
Q 014300 115 QNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL----LSSATPIGW 186 (427)
Q Consensus 115 Q~~~~~~i~IaDlhA~t~~---~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~QS~v~~-~~eL~w~----L~~~t~i~~ 186 (427)
..|++++|++|||||++++ +++++|++.++|+.+.|.|+|+|++ +.|.++||... +...||. ++..+++.|
T Consensus 405 ~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r 483 (682)
T PTZ00348 405 HSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSH 483 (682)
T ss_pred cCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHH
Confidence 4489999999999999984 6999999999999999999999999 99999999754 4667887 568889999
Q ss_pred HhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCc
Q 014300 187 LNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 266 (427)
Q Consensus 187 l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~ 266 (427)
++|+.. ++..++|+++||+||++||+++++|++.+|+|||..++||||++++.+
T Consensus 484 ~~r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~----------------- 537 (682)
T PTZ00348 484 VEELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI----------------- 537 (682)
T ss_pred HHHHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-----------------
Confidence 988762 255699999999999999999999999999999999999999988522
Q ss_pred cccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHh
Q 014300 267 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL 346 (427)
Q Consensus 267 ~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~ 346 (427)
.|.+++. .++|+|..|..+|++|++ +|+|+|.|++++|++||++|||. |+ .+.|++++|.++
T Consensus 538 ---~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cp---------p~-~~~Npvl~~~~y 599 (682)
T PTZ00348 538 ---ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSA---------PN-EEANPVISVAQH 599 (682)
T ss_pred ---cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCC---------CC-CCCCcHHHHHHH
Confidence 2333443 489999888889999875 69999999999999999999994 32 366999999987
Q ss_pred h-------------------CCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014300 347 I-------------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 347 ~-------------------t~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~ 387 (427)
+ ++.+++|++++|. .+||.|||.+++++|+++|+|+|++++
T Consensus 600 ~~~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 600 LLAQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred HhcCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3458999999997 699999999999999999999999985
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-33 Score=289.87 Aligned_cols=271 Identities=21% Similarity=0.228 Sum_probs=206.6
Q ss_pred CceEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-C-CCHHHHHHHHH----HHHHH
Q 014300 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAI 149 (427)
Q Consensus 78 ~~~i~sGi~PTG-~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~-~~~~~l~~~~~----~~~a~ 149 (427)
+.++|+|++||| .+||||++. |.++.+| |+ |++++++|+|+||+++ | +..+..+..+. .+++.
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~f--------Q~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~ 102 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRF--------QDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAET 102 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHH--------HHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHH
Confidence 789999999999 799999995 4468888 55 7999999999999997 5 46677776664 33333
Q ss_pred H-HHcCccCC-ceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccc
Q 014300 150 Y-LACGIDNS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 224 (427)
Q Consensus 150 ~-lA~GiDp~-k~~if~QS~v~~---~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~ 224 (427)
+ .++|.+++ ++.|..+|+|.. +.+....++..++++++.+..+++. |...+.++++.+|+||+|||+|+++++
T Consensus 103 i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~--R~~~~~~is~~Ef~YpLmQayD~~~L~ 180 (401)
T COG0162 103 IKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKK--RLEREQGISFTEFNYPLLQAYDFVYLN 180 (401)
T ss_pred HHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHH--HhccCCCCchhhhhhHHHHHHHHHHHc
Confidence 3 46787777 999999999964 3444445678999999999999884 333234799999999999999999999
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC------
Q 014300 225 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS------ 298 (427)
Q Consensus 225 adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~------ 298 (427)
.|+..+|.||+.++.++||+++|++ .++|.+++.| .|+++ ||+ |||||..+
T Consensus 181 ~dlq~GG~DQ~~ni~~grdl~rr~g------------------~~~~~~lt~P---LL~~l-dG~-KmgKs~~~a~~~~s 237 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRDLIRRLG------------------QKKVVGLTTP---LLTGL-DGK-KMGKSEGGAVWLDS 237 (401)
T ss_pred cchhcCChHHHHHHHHHHHHHHHhC------------------CCCeEEEEec---cccCC-CCC-cccccCCCceEccC
Confidence 9999999999999999999999965 3456677765 99999 675 88887542
Q ss_pred -CCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHH---------------------hhCC-----CC
Q 014300 299 -DQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ---------------------LISG-----KT 351 (427)
Q Consensus 299 -~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~---------------------~~t~-----~~ 351 (427)
+.|.|.+.|.+..|..|++.+||.....+. .+++..|.+ .+-+ +.
T Consensus 238 ~~~Sp~~~yq~~~~i~D~~~~~~~~~~t~l~--------~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a 309 (401)
T COG0162 238 EKTSPYDFYQYWMNIEDADVKRFLKLLTFLS--------LEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAA 309 (401)
T ss_pred CCCCcHhhhhcHhcCcHHHHHHHHHHhCcCC--------hHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHHHHH
Confidence 246788888899999999999996542221 122222222 1122 23
Q ss_pred HHHHHHHHh-----cCChhhHHH-----HHHHHHHHhhhHHHHHHHHHh
Q 014300 352 KGEVAEECQ-----NMNWGTFKP-----LLTDALIEHLHPIQVRYEEIM 390 (427)
Q Consensus 352 ~eel~~~y~-----~l~~gdlK~-----~Lae~I~~~L~pirer~~~~~ 390 (427)
+++.+..|. ++++.|+|. .++..++..|.|.|....+..
T Consensus 310 ~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i 358 (401)
T COG0162 310 EEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLI 358 (401)
T ss_pred HHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhc
Confidence 455666664 478889999 888888888999988776654
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.2e-15 Score=150.46 Aligned_cols=258 Identities=18% Similarity=0.223 Sum_probs=169.9
Q ss_pred CceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccccceEEEEEeccceecc-CC---------CHHHHHHHHHHH
Q 014300 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PY---------DTQQLSKATRET 146 (427)
Q Consensus 78 ~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~~~ 146 (427)
|.+||.|+.||.. +|+||.++.| +++.+| +.|++++-+|.+-.|... |. +.+.++.|++.+
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfq-------r~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I 134 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQ-------RAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSI 134 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHH-------HcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHH
Confidence 5789999999976 9999999544 777773 568999999999999986 32 223444444433
Q ss_pred HHHH----------HHcCccCCceEEEEcCCcchhhHHHHHH---hccccHHHHhhhhhHHHHHHhhCCCCcccccchhh
Q 014300 147 AAIY----------LACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYP 213 (427)
Q Consensus 147 ~a~~----------lA~GiDp~k~~if~QS~v~~~~eL~w~L---~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YP 213 (427)
...+ .-+|..-.+-+|+.+++|.+...+.=.| +...-+|.|.++-+.+. +-...+..++.+|+|-
T Consensus 135 ~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~--RLes~~GlSftEFtYQ 212 (467)
T KOG2623|consen 135 TQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKS--RLESPNGLSFTEFTYQ 212 (467)
T ss_pred HHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHH--hhcCCCCCcHHHHHHH
Confidence 3222 2235544678999999987543332222 34556666666655553 2222467899999999
Q ss_pred HHHHhhhhcc----ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCC
Q 014300 214 VLMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL 289 (427)
Q Consensus 214 vLQAADIll~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~ 289 (427)
+|||.|.+++ +.+++.+|.||..|++..-|+.+|+-..-+ .+|-+-.+ .|.+- +|
T Consensus 213 ~lQAYDfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~P-------LlTss-tG- 271 (467)
T KOG2623|consen 213 LLQAYDFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFP-------LLTSS-TG- 271 (467)
T ss_pred HHHHHhHHHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeee-------eEecC-cc-
Confidence 9999999884 799999999999999999999888653100 11212222 33332 56
Q ss_pred CccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChh
Q 014300 290 SKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWG 365 (427)
Q Consensus 290 ~KMSKS~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~g 365 (427)
.|..||. +|+|+|.- +|-.+++-.-++..| +++-++.++.++.-+++++|.++.. +....
T Consensus 272 ~KlGKSa---GnAvWLdp~~tspy~lYQfF~~~pDd-------------~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r 335 (467)
T KOG2623|consen 272 AKLGKSA---GNAVWLDPSKTSPYHLYQFFASLPDD-------------DVEKFLKLFTFLPLEEIKQILEEHRKEPSQR 335 (467)
T ss_pred hhhccCC---CceEEecCccCCcHHHHHHHHhCchh-------------HHHHHHHHHhcCCHHHHHHHHHHHhcChhhh
Confidence 6999996 68999974 567777766555442 2333444444333334444444443 34444
Q ss_pred hHHHHHHHHHHHhhhHH
Q 014300 366 TFKPLLTDALIEHLHPI 382 (427)
Q Consensus 366 dlK~~Lae~I~~~L~pi 382 (427)
-..+.||+.|.++++..
T Consensus 336 ~aQ~~LA~eVTr~VHG~ 352 (467)
T KOG2623|consen 336 IAQKLLAAEVTRMVHGK 352 (467)
T ss_pred hHHHHHHHHHHHHHccc
Confidence 56778888888887764
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.59 E-value=4.5e-15 Score=143.72 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=121.6
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceE---
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS--- 161 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~--- 161 (427)
.|||.+||||+.+++.+|... +. +...++-|.| |++ .....+....+.+++..+||++++..
T Consensus 9 sPtG~LHlG~~~~al~n~l~a--------r~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~ 74 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFA--------RKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVG 74 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHH--------HHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccC
Confidence 588999999999999999988 44 4455555888 443 23344566677888888999999843
Q ss_pred ----EEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHH
Q 014300 162 ----VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 237 (427)
Q Consensus 162 ----if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh 237 (427)
+|.||+-. ..|++...+.-.+. =|..+|++.++.|....++++|+.|.|+..|
T Consensus 75 g~~~~~~QS~r~---------------------~~y~~~~~~L~~~g--dg~ptY~~a~~vDD~~~~ithViRG~D~~~~ 131 (239)
T cd00808 75 GPYGPYRQSERL---------------------EIYRKYAEKLLEKG--DGFPTYHLANVVDDHLMGITHVIRGEEHLSS 131 (239)
T ss_pred CCCCCEeeeCCH---------------------HHHHHHHHHHHHcC--CCCcccccHHHHhHHhcCCCEEEEChhhhhC
Confidence 89999732 22222211110000 2889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHH
Q 014300 238 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIA 313 (427)
Q Consensus 238 ~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~ 313 (427)
....+.+.+.|| ++.|...+. +.+++. +| .||||+..+ .+|.-. -+|+.|.
T Consensus 132 t~~q~~l~~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~ 186 (239)
T cd00808 132 TPKQILLYEALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALL 186 (239)
T ss_pred hHHHHHHHHHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHH
Confidence 999999999986 456655443 366776 45 699999742 223221 3477777
Q ss_pred HHhhh
Q 014300 314 NKIKR 318 (427)
Q Consensus 314 kKI~k 318 (427)
+-+..
T Consensus 187 ~~l~~ 191 (239)
T cd00808 187 NYLAL 191 (239)
T ss_pred HHHHH
Confidence 66654
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.44 E-value=6.4e-13 Score=118.29 Aligned_cols=63 Identities=44% Similarity=0.513 Sum_probs=54.0
Q ss_pred hhHHHHhhhhcccc---ceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014300 212 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 288 (427)
Q Consensus 212 YPvLQAADIll~~a---dlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg 288 (427)
||+.|+||++.+.. |++++|.||.+|+++.++++++++ + ...|..+..+ +|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~---~--------------~~~p~~~~~~---~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---G--------------PARPFGLTFG---RVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC---C--------------CCCceEEEeC---CeECC-CC
Confidence 99999999999999 999999999999999999999986 1 2357777654 88776 45
Q ss_pred CCccccCC
Q 014300 289 LSKMSKSA 296 (427)
Q Consensus 289 ~~KMSKS~ 296 (427)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.77 E-value=4e-08 Score=94.96 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=113.7
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.+||||...++-+|...+ |.+.+.++=|=|.-. .....+....+..++..+||+.+. .++.|
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar-------~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~-~~~~Q 74 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFAR-------KYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDE-GPYRQ 74 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCC-Ceeeh
Confidence 5789999999999999998872 345555555555322 123335556778888889999885 27889
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHHHHHHHHH
Q 014300 166 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 245 (427)
Q Consensus 166 S~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~eLaRdiA 245 (427)
|+-.+.-+ - +-++-...| |..+|=.--+.|=.+.+.++|.-|.|+..+-..-+.++
T Consensus 75 S~r~~~y~---~---------------~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~ 130 (230)
T cd00418 75 SDRFDLYR---A---------------YAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLY 130 (230)
T ss_pred hcCHHHHH---H---------------HHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHH
Confidence 98543211 0 101111111 55666666666777789999999999999999999999
Q ss_pred HHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHHHhh
Q 014300 246 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 317 (427)
Q Consensus 246 ~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~ 317 (427)
+.|+ ++.|...+.+ +|.+. +| +||||++.+ .+|.-. -.|+.|.+-+.
T Consensus 131 ~~Lg------------------~~~P~~~H~p---ll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 131 EALG------------------WEPPRFYHFP---RLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred HHcC------------------CCCCeEEEee---eeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 8875 5678777665 77775 55 699999742 233221 34666666554
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.52 E-value=1e-06 Score=90.27 Aligned_cols=86 Identities=24% Similarity=0.321 Sum_probs=55.9
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceE-EEEEecccee------------------c--c-C-
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYET-LFFIVDLHAI------------------T--L-P- 133 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~-~i~IaDlhA~------------------t--~-~- 133 (427)
+..|=||+-|||.+||||+...+.. ++ +.+++. .|+++ +++.+|.|-- . . +
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~--D~---i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~ 94 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITA--DL---VARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPD 94 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHH--HH---HHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchh
Confidence 4677889999999999998765432 11 223333 36775 6779999921 1 1 0
Q ss_pred ---CCHHHHHHHHHHHHHHHHHcCccCCceEEEEcCCcchh
Q 014300 134 ---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 171 (427)
Q Consensus 134 ---~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~QS~v~~~ 171 (427)
..++-..++.......+-.+||+.+ +|.+++...+
T Consensus 95 p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~ 132 (353)
T cd00674 95 PFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKS 132 (353)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhh
Confidence 0234455555667777778999875 8888886543
No 31
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.50 E-value=7.2e-07 Score=95.56 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=48.8
Q ss_pred cccceEecccchHH-HHHHHHHHHH-HHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014300 223 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 223 ~~adlvpvG~DQ~q-h~eLaRdiA~-r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
+++|+.|.|.||.. +..++++|++ .|+ .+.|..+... +|..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~---~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYE---LFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeee---eEEeC-CC-CcccccC---C
Confidence 46999999999999 9999999999 654 3457665543 55543 35 6999997 6
Q ss_pred ceeecCC-----CHHHHH
Q 014300 301 SRINLLD-----PKDVIA 313 (427)
Q Consensus 301 s~I~L~D-----spe~I~ 313 (427)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 8888765 566665
No 32
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.16 E-value=5.6e-05 Score=80.86 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=117.9
Q ss_pred eEEEecCCC--CcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 80 ~i~sGi~PT--G~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
.|.+.|.|| |.+||||...++.+|...+ +.+.+.++=|-|.-. .....+....+..++..+|||+
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar-------~~gG~fiLRIEDTD~------~R~~~~~~~~i~~~L~WLGl~w 70 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFAR-------HHNGKFLLRIEDTDK------ERSTKEAVEAIFSGLKWLGLDW 70 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCC
Confidence 356777776 9999999999999999871 335566655666421 1222345556777888899999
Q ss_pred CceEEEEcCCcch-hhHHHHH-------HhccccHHHHhhhhh----------HHHHHHhh-------CC---------C
Q 014300 158 SKASVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMIQ----------FKEKSHKA-------GG---------E 203 (427)
Q Consensus 158 ~k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~~----------~k~~~~~~-------~~---------~ 203 (427)
+. ..|+||+-.+ |.+.+-. +-|+++-.+|..+.. |....+.. +. +
T Consensus 71 De-~py~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~ 149 (513)
T PRK14895 71 NG-EVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPR 149 (513)
T ss_pred CC-CceeEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCC
Confidence 84 3799999543 2221111 348888877764421 10000000 00 0
Q ss_pred C--c-----ccccchh-------hHH---------HHhhh---hccccceEecccchHHHHHHHHHHHHHHhhhhcCccc
Q 014300 204 N--V-----GVALLTY-------PVL---------MASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 257 (427)
Q Consensus 204 ~--~-----~~g~l~Y-------PvL---------QAADI---ll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~ 257 (427)
. + --|.+.+ +++ +.|.+ ...+.|+|..|.||..|.-.-..+.+.++
T Consensus 150 ~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------- 221 (513)
T PRK14895 150 EGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------- 221 (513)
T ss_pred CCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------
Confidence 0 0 0011111 111 22111 22378999999999999887777777654
Q ss_pred cccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 258 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 258 ~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
+..|...+.+ .|.++ +| +||||.+. ...+.+ .|+.|.+-+..
T Consensus 222 ----------~~~p~~~H~p---lv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 ----------YAVPSMTHIP---LIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred ----------CCCCeEEEEE---eEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 4567777654 77777 55 69999974 333321 47777776654
No 33
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.15 E-value=6.9e-06 Score=82.39 Aligned_cols=174 Identities=20% Similarity=0.258 Sum_probs=106.3
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.+||||+..++.+|...+ +.+.+.++=|-|. ++ .....+....+..++..+||+.+.- +++|
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar-------~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~-~~~Q 78 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDAR-------AHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDGP-VLYQ 78 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCCC-ceEe
Confidence 4679999999999999999872 4466777777774 22 2334456678888999999999863 6779
Q ss_pred CCcchh----hH----HHHHHhccccHHHHhhhhh--------HHHHHHhhCC-CC------------------------
Q 014300 166 SHVRAH----VE----LMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN------------------------ 204 (427)
Q Consensus 166 S~v~~~----~e----L~w~L~~~t~i~~l~R~~~--------~k~~~~~~~~-~~------------------------ 204 (427)
|+-.+. .+ .-+.+.|.++-.++++..+ |--.-+.... +.
T Consensus 79 S~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~ 158 (299)
T PRK05710 79 SQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQ 158 (299)
T ss_pred eccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeE
Confidence 996432 11 1123569999888865431 1000000000 00
Q ss_pred ---c--cc---------ccchhhHHHHhhhhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccC
Q 014300 205 ---V--GV---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV 270 (427)
Q Consensus 205 ---~--~~---------g~l~YPvLQAADIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~ 270 (427)
. .+ |..+|=+-=+.|=.+.+.++|.=|.|....-..=.-|.+.|+ ++.
T Consensus 159 ~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~ 220 (299)
T PRK05710 159 HQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPT 220 (299)
T ss_pred eeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCC
Confidence 0 01 112221112222233468899999998665555555555543 677
Q ss_pred CceecCCCCcccccCCCCCCccccCC
Q 014300 271 PEPLIPPAGARVMSLTDGLSKMSKSA 296 (427)
Q Consensus 271 P~~l~~~~~~~l~sL~dg~~KMSKS~ 296 (427)
|+..+.+ .|.+. +| +||||++
T Consensus 221 P~y~H~p---ll~~~-~g-~kLSKr~ 241 (299)
T PRK05710 221 PRYLHLP---LVLNA-DG-QKLSKQN 241 (299)
T ss_pred CeEEEee---cccCC-CC-CcccccC
Confidence 8877765 77776 56 6999996
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.12 E-value=0.00023 Score=75.75 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=112.6
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.+||||...++-+|.... +.+.+.++=|=|. ++. ....+....+..++.-+||+++. ..|.|
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar-------~~~G~~iLRieDt----D~~--R~~~~~~~~i~~~L~wlGl~~de-~~~~Q 74 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAK-------HTGGEFILRIEDT----DLE--RNIEEAEEAILEGLKWLGISWDE-GPYYQ 74 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEeCcC----CCc--cCChHHHHHHHHHHHHCCCCCCC-Ceeeh
Confidence 4789999999999999998771 3355555445553 211 22234555777788889999985 48999
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHhhhhh----------H----H-----HHHHh--hCC---------CCc--
Q 014300 166 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ----------F----K-----EKSHK--AGG---------ENV-- 205 (427)
Q Consensus 166 S~v~~-~~eL~w~-------L~~~t~i~~l~R~~~----------~----k-----~~~~~--~~~---------~~~-- 205 (427)
|+-.+ |.+..-. +-|+++-.++..+.. | . +.... .|. +..
T Consensus 75 S~r~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~ 154 (470)
T TIGR00464 75 SQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVV 154 (470)
T ss_pred hCCHHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCce
Confidence 99543 2222212 348888777754311 0 0 00000 000 000
Q ss_pred -----ccccch----------------hhHHH---HhhhhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccC
Q 014300 206 -----GVALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 261 (427)
Q Consensus 206 -----~~g~l~----------------YPvLQ---AADIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~ 261 (427)
-.|.+. +|... +.|=...+.|+|..|.||..|...-..+.+.++
T Consensus 155 ~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------ 222 (470)
T TIGR00464 155 SFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------ 222 (470)
T ss_pred eEEecccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------
Confidence 001111 12221 111122379999999999999988888877764
Q ss_pred CCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 262 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 262 ~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
++.|...+.+ .+.++ +| +||||.+ +.+.|.| .|+.+.+-+..
T Consensus 223 ------~~~p~~~H~p---~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 223 ------WKIPVFAHLP---MILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred ------CCCCeEEEEe---eeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHH
Confidence 4567666654 56665 55 6999996 3455432 46666665543
No 35
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.10 E-value=1.2e-05 Score=68.02 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=43.6
Q ss_pred EEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHH
Q 014300 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAI 149 (427)
Q Consensus 81 i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~ 149 (427)
+++|-.| |.+|+||+.+ ++.+.++ ++ .+++.++|.|+.+...+...++++.....+.
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~--------~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGI--------AD--QCVVRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHh--------CC--cEEEEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 5678888 9999999986 7778777 52 6899999999988655667777666555543
No 36
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.08 E-value=6.1e-05 Score=80.23 Aligned_cols=193 Identities=20% Similarity=0.197 Sum_probs=116.0
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCce-----
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 160 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~----- 160 (427)
.|||.+||||...|+.+|.... +.+.+.++=|=| +-. .....+....+..++.-+||+.+.-
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar-------~~~G~fiLRieD-tD~-----~R~~~~~~~~i~~~L~wlGl~~De~p~~~~ 78 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFAR-------HHGGKFILRIED-TDQ-----ERSTEEAEEAILEGLKWLGLDWDEGPDGGP 78 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEeCc-CCC-----CCCChHHHHHHHHHHHHCCCCCCCCCccCC
Confidence 4679999999999999999871 334444444544 211 1223344556777788899998853
Q ss_pred -EEEEcCCcch-hhHHHHH-------HhccccHHHHhhhhhHHHH-------------------HHh--hCC--------
Q 014300 161 -SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMIQFKEK-------------------SHK--AGG-------- 202 (427)
Q Consensus 161 -~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~~~k~~-------------------~~~--~~~-------- 202 (427)
-.|.||+-.+ |.+..-. +-|+++-.+|.....-... ... .|.
T Consensus 79 ~gpy~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~ 158 (476)
T PRK01406 79 YGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKV 158 (476)
T ss_pred CCceehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEc
Confidence 1499999543 2221111 4588888777643110000 000 000
Q ss_pred ------------------CCcccccc------hhhHHHHhhhh---ccccceEecccchHHHHHHHHHHHHHHhhhhcCc
Q 014300 203 ------------------ENVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 255 (427)
Q Consensus 203 ------------------~~~~~g~l------~YPvLQAADIl---l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~ 255 (427)
.+..++-+ -+|..+.||++ +.+.|+|..|.||..|.-.-..+.+.|+
T Consensus 159 p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------ 232 (476)
T PRK01406 159 PDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------ 232 (476)
T ss_pred CCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------
Confidence 00001111 15666677664 3478999999999999988888877765
Q ss_pred cccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 256 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 256 ~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
+..|...+.+ .+.++ +| +||||.+ ..+.+.| .|+.|.+-+.+
T Consensus 233 ------------~~~p~~~H~p---li~~~-~g-~klSKR~----g~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 233 ------------WEVPVFAHLP---LILGP-DG-KKLSKRH----GATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred ------------CCCCeEEEee---eeeCC-CC-CcccCcC----CccCHHHHHHCCCCHHHHHHHHHH
Confidence 4567766654 56676 45 6999996 3555542 46666665543
No 37
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.89 E-value=3.2e-05 Score=83.04 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=52.2
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccc-cccceE-EEEEeccc--------------------eecc-CC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLH--------------------AITL-PY 134 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~-~i~IaDlh--------------------A~t~-~~ 134 (427)
+..|=||+-|||.+||||+..++..-+-. +++ ..|.++ +|+.+|.| .++. |.
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~-----r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpd 93 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIA-----RALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPD 93 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHH-----HHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCC
Confidence 57889999999999999997766542211 222 336665 78899999 2332 21
Q ss_pred ----CHHHHHHHHHHHHHHHHHcCccCCceEEEEcCCc
Q 014300 135 ----DTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 168 (427)
Q Consensus 135 ----~~~~l~~~~~~~~a~~lA~GiDp~k~~if~QS~v 168 (427)
...-..++-....+.+-.+||+. +|+.+++.
T Consensus 94 p~g~~~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~ 128 (515)
T TIGR00467 94 PEGCKTSYAEHFLIPFLESLPVLGINP---EFIRASKQ 128 (515)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCeE---EEEEHHHh
Confidence 12222233334445555689965 68888885
No 38
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.66 E-value=0.00021 Score=69.64 Aligned_cols=162 Identities=20% Similarity=0.168 Sum_probs=96.9
Q ss_pred EecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014300 83 SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 162 (427)
Q Consensus 83 sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~i 162 (427)
.|-.|||.+||||...++-+|+... +.+...++=|-|.-. .......+...++.+++..+|++++ ..
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-------~~~G~~ilRieDtD~----~r~~~~~~~~~~i~~dL~wLGl~~d--~~ 72 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-------MYGGKFILRFDDTDP----RTKRPDPEAYDMIPEDLEWLGVKWD--EV 72 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEeeCcCCC----CcccchHHHHHHHHHHHHHcCCCCC--Cc
Confidence 3667889999999999999998761 223444444555421 1101334445568889999999999 57
Q ss_pred EEcCCcch-hhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHh---hhhccccceEecccchHHHH
Q 014300 163 FVQSHVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHL 238 (427)
Q Consensus 163 f~QS~v~~-~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA---DIll~~adlvpvG~DQ~qh~ 238 (427)
+.||+-.+ +.+..-.|- .+-..|. ....+ + . ..+||..+=| |=.+.+.++|.-|.|-..+-
T Consensus 73 ~~qS~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~-~---~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t 137 (240)
T cd09287 73 VIASDRIELYYEYARKLI--------EMGGAYV--HPRTG-S-K---YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNT 137 (240)
T ss_pred cchhccHHHHHHHHHHHH--------HcCCccc--CcccC-C-c---EEEEEccccceeeeccccCCCeEEechhhhhCC
Confidence 99998533 322211111 0111111 01111 1 1 1335555544 33456899999999988776
Q ss_pred HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014300 239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 296 (427)
Q Consensus 239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 296 (427)
..=.-|.+.|+ ++.|...+.+ +|.. +| .||||.+
T Consensus 138 ~~q~~l~~~Lg------------------~~~P~~~H~p---ll~~--~~-~kLSKR~ 171 (240)
T cd09287 138 EKQRYIYEYFG------------------WEYPETIHWG---RLKI--EG-GKLSTSK 171 (240)
T ss_pred HHHHHHHHHcC------------------CCCCcEEeee---eecC--CC-Ceecccc
Confidence 66556655543 5668776654 6642 45 7999996
No 39
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.63 E-value=0.0004 Score=69.73 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=34.3
Q ss_pred ccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 224 QSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 224 ~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
..|+..+|.||. +|++...-.+.-++ | -..|..+... .++- + +|.+|||||. +|.
T Consensus 226 ~~di~~~G~D~~~~h~~~~~~~~~~~~---~--------------~~~~~~~~~~--g~~~-~-~~g~KmSKS~---gn~ 281 (312)
T cd00668 226 PADWHLIGKDILRGWANFWITMLVALF---G--------------EIPPKNLLVH--GFVL-D-EGGQKMSKSK---GNV 281 (312)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhc---C--------------CCCcceeEEC--cEEE-c-CCCccccccC---CCc
Confidence 478999999999 77765444433322 1 0123222221 1333 3 3337999997 678
Q ss_pred eecC
Q 014300 303 INLL 306 (427)
Q Consensus 303 I~L~ 306 (427)
|.+.
T Consensus 282 v~~~ 285 (312)
T cd00668 282 IDPS 285 (312)
T ss_pred CCHH
Confidence 8773
No 40
>PLN02627 glutamyl-tRNA synthetase
Probab=97.63 E-value=0.005 Score=66.41 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=61.4
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCc
Q 014300 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 159 (427)
Q Consensus 80 ~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k 159 (427)
++=-.=.|||.+||||...|+.+|.... +.+.++++=|=|--. .....+....+..++.-+||+.+.
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar-------~~gG~fiLRIEDTD~------~R~~~e~~~~I~~~L~WLGl~wDe 113 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFAR-------SKGGKFVLRIEDTDL------ARSTKESEEAVLRDLKWLGLDWDE 113 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHH-------HhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCc
Confidence 3333445679999999999999999871 334555544554221 122334555677777889999986
Q ss_pred eE-------EEEcCCcch-hhHHHH-------HHhccccHHHHhhh
Q 014300 160 AS-------VFVQSHVRA-HVELMW-------LLSSATPIGWLNKM 190 (427)
Q Consensus 160 ~~-------if~QS~v~~-~~eL~w-------~L~~~t~i~~l~R~ 190 (427)
-. -|+||+-.+ |.+.+- .+-|+++-.+++.+
T Consensus 114 gp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 114 GPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred CcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 42 599999543 222111 14588887777543
No 41
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.59 E-value=0.00081 Score=66.80 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=102.2
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.|||||...++-+|.... +.+..+++=|=|.-. . ....+....+..++.-+||++++- .++|
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar-------~~gG~~iLRiEDtD~----~--R~~~~~~~~I~~dL~wLGl~wDe~-~~~Q 73 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDAR-------AHGGRWLVRIEDLDP----P--REVPGAADDILRTLEAYGLHWDGE-VVYQ 73 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEeCcCCC----C--CCChHHHHHHHHHHHHcCCCCCCC-eeee
Confidence 4889999999999999998871 335555555555322 1 222345556777778889999863 5789
Q ss_pred CCcchh-hHHHHH-------HhccccHHHHhhhh-----hHHHHHHh----hCCC-------------------------
Q 014300 166 SHVRAH-VELMWL-------LSSATPIGWLNKMI-----QFKEKSHK----AGGE------------------------- 203 (427)
Q Consensus 166 S~v~~~-~eL~w~-------L~~~t~i~~l~R~~-----~~k~~~~~----~~~~------------------------- 203 (427)
|+-.+. .+..-. +.|.++-.++++.. .|...-+. ...+
T Consensus 74 S~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~ 153 (272)
T TIGR03838 74 SQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQ 153 (272)
T ss_pred eCCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEe
Confidence 996442 221111 34888888876541 11100000 0000
Q ss_pred --Cccccc-ch-----hhHHHHhhh---hccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc
Q 014300 204 --NVGVAL-LT-----YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 272 (427)
Q Consensus 204 --~~~~g~-l~-----YPvLQAADI---ll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~ 272 (427)
+..++- ++ ||..+=|.. .+.+.++|.=|.|....--.=.-|.+.|+ ++.|.
T Consensus 154 ~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~ 215 (272)
T TIGR03838 154 DLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPR 215 (272)
T ss_pred cCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCe
Confidence 000111 11 233332222 23468999999998776555455555543 66787
Q ss_pred eecCCCCcccccCCCCCCccccCCC
Q 014300 273 PLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 273 ~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
..+.+ .|.+. +| +|+||++.
T Consensus 216 y~H~p---ll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 216 YLHLP---LVVNA-DG-EKLSKQNG 235 (272)
T ss_pred EEech---hhhCC-CC-CeeeccCC
Confidence 76654 77776 56 69999974
No 42
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00033 Score=74.50 Aligned_cols=179 Identities=21% Similarity=0.210 Sum_probs=106.6
Q ss_pred EEEecC--CCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 81 i~sGi~--PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
|.+=|. |||.+||||...|+.+|... +. +.++++=|=|. ++. ....+....+..++.-+||++
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~A--------r~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~w 75 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYA--------RKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDW 75 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHH--------HHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCC
Confidence 455555 55999999999999999887 33 45555555552 221 222344456667777899999
Q ss_pred CceEEEEcCCcchh-h-HHHHHH------hccccHHHHhhhh-----------hHH---------HHHHhhCC-------
Q 014300 158 SKASVFVQSHVRAH-V-ELMWLL------SSATPIGWLNKMI-----------QFK---------EKSHKAGG------- 202 (427)
Q Consensus 158 ~k~~if~QS~v~~~-~-eL~w~L------~~~t~i~~l~R~~-----------~~k---------~~~~~~~~------- 202 (427)
+.. +++||+..+. . ...+++ .|.++-.+|+.+- .|. ++....+.
T Consensus 76 de~-~~~QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR 154 (472)
T COG0008 76 DEG-PYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVR 154 (472)
T ss_pred CCc-eeehhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEE
Confidence 975 8999996542 2 223332 4888886666541 111 00111000
Q ss_pred ---C--Ccc-------cccchhh------HHHHhhhhc------------cccceEecccchHHHHHHHHHHHHHHhhhh
Q 014300 203 ---E--NVG-------VALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLY 252 (427)
Q Consensus 203 ---~--~~~-------~g~l~YP------vLQAADIll------------~~adlvpvG~DQ~qh~eLaRdiA~r~n~~y 252 (427)
+ ..+ .|.+..+ ++.-+|+.. .+.++|.-|.|...+=..-+-|-+-|+
T Consensus 155 ~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg--- 231 (472)
T COG0008 155 LKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG--- 231 (472)
T ss_pred EeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC---
Confidence 0 010 1222222 333333332 258999999998877665555555433
Q ss_pred cCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 253 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 253 g~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
++.|...+.+ +|.+ -+| +||||++.
T Consensus 232 ---------------~~~P~~~H~~---li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 ---------------WPPPVYAHLP---LLLN-EDG-KKLSKRKG 256 (472)
T ss_pred ---------------CCCCcEEEee---eeec-CCC-CeecCccC
Confidence 6678877765 7777 455 69999973
No 43
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.55 E-value=0.00034 Score=68.15 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=91.2
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.+||||...++-+|.... +.+.+.++=|=|.- ......+....+..++..+||+.+ .+++|
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar-------~~~G~~iLRieDtD------~~R~~~~~~~~I~~dL~wlGl~wD--~~~~Q 73 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAK-------KYGGRCNLRFDDTN------PEKEEEEYVDSIKEDVKWLGIKPY--KVTYA 73 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEecCCC------CcccchHHHHHHHHHHHHcCCCCC--Cceec
Confidence 5789999999999999998771 33455544444432 113334555678888889999999 58899
Q ss_pred CCcch-hhHHHHHH---hccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHh---hhhccccceEecccchHHHH
Q 014300 166 SHVRA-HVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHL 238 (427)
Q Consensus 166 S~v~~-~~eL~w~L---~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA---DIll~~adlvpvG~DQ~qh~ 238 (427)
|+-.+ +.+..-.| +...+ . ...+ + ...+||..+=| |=.+.+.++|.-|.|....-
T Consensus 74 S~r~~~Y~~~~~~L~~~g~aY~-----------~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t 135 (238)
T cd00807 74 SDYFDQLYEYAEQLIKKGKAYV-----------H--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRR 135 (238)
T ss_pred ccCHHHHHHHHHHHHHcCCeec-----------C--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCC
Confidence 98543 22211111 11111 0 0001 1 22235555544 44556899999999987655
Q ss_pred HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
..=.-+.+.|+ ++.|..+.-. .+ +. +| .|+||++.
T Consensus 136 ~~Q~~l~~aLg------------------~~~P~~~~~~---hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 136 PSYYWLCDALR------------------LYRPHQWEFS---RL-NL-TY-TVMSKRKL 170 (238)
T ss_pred HHHHHHHHHcC------------------CCCCceeEEE---EE-CC-CC-CCccCcCc
Confidence 54445555443 5567433211 23 33 55 69999963
No 44
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.44 E-value=0.00031 Score=72.11 Aligned_cols=69 Identities=23% Similarity=0.400 Sum_probs=33.1
Q ss_pred hccccceEecccchHH---HHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 221 LLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 221 ll~~adlvpvG~DQ~q---h~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
-.++.|+.|.|.|... -...+.+||+++ || .+.|..+.-. +-++ .|.+|||||.
T Consensus 231 ~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk- 287 (360)
T PF01921_consen 231 AALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK- 287 (360)
T ss_dssp HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S----------
T ss_pred hhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC-
Confidence 3457999999999999 999999999653 55 4566665432 2334 3446999997
Q ss_pred CCCceeecCC-----CHHHHHH
Q 014300 298 SDQSRINLLD-----PKDVIAN 314 (427)
Q Consensus 298 ~~~s~I~L~D-----spe~I~k 314 (427)
++.|.+.| +||.++=
T Consensus 288 --G~~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 288 --GNGITPEEWLEYAPPESLRY 307 (360)
T ss_dssp -------HHHHHTTS-HHHHHH
T ss_pred --CCccCHHHHHHhcCHHHHHH
Confidence 57776654 5666654
No 45
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.41 E-value=0.00051 Score=73.71 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=61.0
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 81 i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
+.+=| .|||.+||||.-.++-+|.... +.+..+++=|=|. ++ .....+....+..++.-+|++++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar-------~~gG~~iLRiEDT----Dp--~R~~~e~~~~I~~dL~WLGl~wD 78 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYAR-------RYKGRLILRFDDT----NP--SKEKAEFEESIIEDLGKIEIKPD 78 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEECCC----CC--CccchHHHHHHHHHHHHhCCCCC
Confidence 44444 4569999999999999998761 2344444334442 22 23444566677888888999998
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014300 159 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLN 188 (427)
Q Consensus 159 k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~ 188 (427)
. ++.||+..+ +.+.+-. +.|.++-.+++
T Consensus 79 ~--~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~ 114 (523)
T PLN03233 79 S--VSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMK 114 (523)
T ss_pred C--CccccccHHHHHHHHHHHHHcCCeEecCCCHHHHH
Confidence 4 789999754 3332222 34888877774
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.41 E-value=0.0062 Score=64.80 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=46.3
Q ss_pred CceEE-EecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEEEe-cccee-c-c-----CCCHH-HHHHHHHHH
Q 014300 78 KKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFFIV-DLHAI-T-L-----PYDTQ-QLSKATRET 146 (427)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~Ia-DlhA~-t-~-----~~~~~-~l~~~~~~~ 146 (427)
.+++| +|--|.|.+||||..+.+. .++ +.+++. .|++|++... |.|-- + . ..++. ....++..+
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~--~Dv---l~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f 97 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVV--FDV---LRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAF 97 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHH--HHH---HHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555 8999999999999765332 121 223333 3788877654 33321 1 0 12443 345566678
Q ss_pred HHHHHHcCc-cCC
Q 014300 147 AAIYLACGI-DNS 158 (427)
Q Consensus 147 ~a~~lA~Gi-Dp~ 158 (427)
.+++.++|+ .|+
T Consensus 98 ~~~~~~Lgi~~~d 110 (463)
T PRK00260 98 HEDMDALNVLPPD 110 (463)
T ss_pred HHHHHHcCCCCCC
Confidence 889999999 555
No 47
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.00065 Score=71.53 Aligned_cols=90 Identities=27% Similarity=0.318 Sum_probs=59.1
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.+||||...|+-+|.... +.+.+.++=|=|.-. .....+....+..++.-+||+.+. .|.|
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar-------~~gG~fiLRiEDTD~------~R~~~e~~~~I~~~L~WlGl~wDe--~y~Q 71 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAK-------QQNEDFLIRIEDTDK------ERNIEGKDKEILEILNLFGISWDK--LVYQ 71 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEeCcCCC------CcCChHHHHHHHHHHHHcCCCCCC--Ceeh
Confidence 4889999999999999999871 334555544555321 122234555777778889999995 6999
Q ss_pred CCcch-h---hHHHHH----HhccccHHHHhhh
Q 014300 166 SHVRA-H---VELMWL----LSSATPIGWLNKM 190 (427)
Q Consensus 166 S~v~~-~---~eL~w~----L~~~t~i~~l~R~ 190 (427)
|+-.+ | .+...- +-|+++-.++..+
T Consensus 72 SeR~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 72 SENLKFHRQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred hccHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 99543 2 221111 3488888877644
No 48
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.001 Score=70.24 Aligned_cols=90 Identities=22% Similarity=0.212 Sum_probs=59.1
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.+||||...|+.+|.... +.+.+.++=|=|.-. ..........+..++..+|++.+. .|.|
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar-------~~gG~fiLRIEDTD~------~Rs~~~~~~~I~e~L~wLGI~~De--~y~Q 74 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYAR-------KHGGKFILRIDDTDL------ERSKQEYADAIAEDLKWLGINWDR--TFRQ 74 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEeccCCc------ccchHHHHHHHHHHHHHcCCCCCc--cccH
Confidence 4789999999999999999871 334555544555321 123344556777788889999984 7999
Q ss_pred CCcchh-hHHH-------HHHhccccHHHHhhh
Q 014300 166 SHVRAH-VELM-------WLLSSATPIGWLNKM 190 (427)
Q Consensus 166 S~v~~~-~eL~-------w~L~~~t~i~~l~R~ 190 (427)
|+..+. .+.. ...-|+++-.+|..+
T Consensus 75 Ser~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~ 107 (445)
T PRK12558 75 SDRFDRYDEAAEKLKAAGRLYPCYETPEELELK 107 (445)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEecCchHHHHHH
Confidence 995432 1111 114488887777543
No 49
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.28 E-value=0.00029 Score=75.56 Aligned_cols=195 Identities=18% Similarity=0.177 Sum_probs=98.6
Q ss_pred EEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEE--EEeccceeccC------CCHHHHH-HHHHHHHHHH
Q 014300 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF--FIVDLHAITLP------YDTQQLS-KATRETAAIY 150 (427)
Q Consensus 81 i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i--~IaDlhA~t~~------~~~~~l~-~~~~~~~a~~ 150 (427)
-|+|--|+|.+|+||.-+++---+ +.+++. .|++|.. .+.||-.-+.. ..|+.+. .....+..+|
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~-----laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDA-----LARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDL 190 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHH-----HHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999876553221 112332 3777643 35666432210 1233333 3345677888
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHh----hhhhHHHHHHhhCCC-Cc----ccccchhhHHHHhhhh
Q 014300 151 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN----KMIQFKEKSHKAGGE-NV----GVALLTYPVLMASDIL 221 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~----R~~~~k~~~~~~~~~-~~----~~g~l~YPvLQAADIl 221 (427)
..+|+.++ .+++.|+........+++.....-|-+. ...-|. ...++++ .. +=|..+|. +.||-
T Consensus 191 ~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~---t~Dia 263 (507)
T PRK01611 191 DRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEFGDDKDRVLIKSDGTYTYF---TRDIA 263 (507)
T ss_pred HHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhhCCCCCeEEEECCCCccch---HHHHH
Confidence 89999875 3455555322112222221111000000 000000 0111101 00 22555663 34654
Q ss_pred cc-------ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC--c-eecCCCCcccccCCCCCCc
Q 014300 222 LY-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLSK 291 (427)
Q Consensus 222 l~-------~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P--~-~l~~~~~~~l~sL~dg~~K 291 (427)
+. +--+-.+|.||..|+.-...+++.++. ..+ . .++... .++-+ .+| +|
T Consensus 264 ~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~------------------~~~~~~~~~h~~~-glv~~-~~g-~K 322 (507)
T PRK01611 264 YHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGY------------------DPDALEVLLHQMV-GLVRG-GEG-VK 322 (507)
T ss_pred HHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCC------------------CcccceEEEEEEE-EeeEC-CCC-Cc
Confidence 43 233449999999999999999988762 111 1 122111 12222 244 69
Q ss_pred cccCCCCCCceeecCCCHHH
Q 014300 292 MSKSAPSDQSRINLLDPKDV 311 (427)
Q Consensus 292 MSKS~p~~~s~I~L~Dspe~ 311 (427)
||||. ++.|.+.|==++
T Consensus 323 MSkR~---Gn~i~l~dll~~ 339 (507)
T PRK01611 323 MSTRA---GNVVTLDDLLDE 339 (507)
T ss_pred ccCCC---CceeEHHHHHHH
Confidence 99997 688888663333
No 50
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.0021 Score=69.86 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=107.7
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
+.+..-+=.|||.+||||...++-+|.... +.+..+++=|-|. ++.......+....+..++..+|+++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar-------~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~w 169 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAK-------MYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKW 169 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCC
Confidence 455566777889999999999999988761 2244555556664 22111233444467778888899999
Q ss_pred CceEEEEcCCcch-hhHHHHH-------HhccccHHHHhhhhh------HH-----HHH---Hh--hCC-----------
Q 014300 158 SKASVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------FK-----EKS---HK--AGG----------- 202 (427)
Q Consensus 158 ~k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~~------~k-----~~~---~~--~~~----------- 202 (427)
+. ++.||+..+ +.+.+-. +.|.++-.++++... +. +.. .. .|.
T Consensus 170 D~--~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k 247 (567)
T PRK04156 170 DE--VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVK 247 (567)
T ss_pred CC--ccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEE
Confidence 84 789999653 2221111 347776655533210 00 000 00 000
Q ss_pred -----CCcc------------------cccchhhHHHHh---hhhccccceEecccchHHHHHHHHHHHHHHhhhhcCcc
Q 014300 203 -----ENVG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 256 (427)
Q Consensus 203 -----~~~~------------------~g~l~YPvLQAA---DIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~ 256 (427)
.+.+ -+-..||.++=| |..+.+.|+|.-|.|...+-..-.-+.+.|+
T Consensus 248 ~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg------- 320 (567)
T PRK04156 248 TDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG------- 320 (567)
T ss_pred CcccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC-------
Confidence 0010 112236665533 3445679999999999887776666666543
Q ss_pred ccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014300 257 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 296 (427)
Q Consensus 257 ~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 296 (427)
++.|...+.+ +|. + +| .|||||.
T Consensus 321 -----------~~~P~~~H~~---~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 -----------WEYPETIHYG---RLK-I-EG-FVLSTSK 343 (567)
T ss_pred -----------CCCceEEEcc---eec-C-CC-ceeeccc
Confidence 4568777765 664 4 56 5999996
No 51
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.23 E-value=0.0018 Score=70.57 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=104.8
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCcc
Q 014300 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID 156 (427)
Q Consensus 80 ~i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiD 156 (427)
.+.+=| .|||.|||||...++-+|... +. +..+++=|=|. ++. ....+....+..++..+||+
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~A--------r~~gG~~iLRiEDT----Dp~--R~~~e~~d~IleDL~WLGl~ 117 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLA--------DKYKGKLVFRFDDT----NPS--KEKEHFEQAILDDLATLGVS 117 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHH--------HHhCCEEEEEEcCC----CCc--ccCHHHHHHHHHHHHHCCCC
Confidence 345555 466999999999999999877 33 44454444442 221 34446667788888899999
Q ss_pred CCceEEEEcCCcch-hhHHHHH-------HhccccHHHHhhhh------hHHHH-----H---Hh--hCC--C-------
Q 014300 157 NSKASVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI------QFKEK-----S---HK--AGG--E------- 203 (427)
Q Consensus 157 p~k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~------~~k~~-----~---~~--~~~--~------- 203 (427)
++. .+++||+..+ +.+.+-. +.|.++-.+++... .+.+. . +. .|. +
T Consensus 118 wDe-~~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~ 196 (601)
T PTZ00402 118 WDV-GPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRA 196 (601)
T ss_pred CCC-ceeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEE
Confidence 985 3688999754 2222222 35777766654321 11110 0 00 010 0
Q ss_pred -------Cccccc------------------chhhHHHHhhhh---ccccceEecccchHHHHHHHHHHHHHHhhhhcCc
Q 014300 204 -------NVGVAL------------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 255 (427)
Q Consensus 204 -------~~~~g~------------------l~YPvLQAADIl---l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~ 255 (427)
+.+++- -.||..+=|-.+ +.+.++|..|.|...+-..-.-|.+.|+
T Consensus 197 kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------ 270 (601)
T PTZ00402 197 KISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------ 270 (601)
T ss_pred ecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC------
Confidence 001100 144544433332 2468999999999888777666666653
Q ss_pred cccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014300 256 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 296 (427)
Q Consensus 256 ~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 296 (427)
++.|...+.+ + .++ +| .||||++
T Consensus 271 ------------~~~P~~~h~~---r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 271 ------------IRKPIVEDFS---R-LNM-EY-SVMSKRK 293 (601)
T ss_pred ------------CCCceEEEEe---e-EcC-CC-CcccccC
Confidence 5667766653 5 465 56 5999996
No 52
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0016 Score=69.24 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=50.7
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceE-EEEEeccceecc--CC---CHHHHHHHH-------
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYET-LFFIVDLHAITL--PY---DTQQLSKAT------- 143 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~-~i~IaDlhA~t~--~~---~~~~l~~~~------- 143 (427)
...++=|||.|||.+||||+-=++.- ++ -.+...+.++++ +|+++|.+-=+- +. +++.+.++.
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~--d~--V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~I 94 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTA--DA--VRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEI 94 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHH--HH--HHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccC
Confidence 46788999999999999997432221 11 001122446665 778888876553 21 335554432
Q ss_pred -----------HHHHHHHH----HcCccCCceEEEEcCCc
Q 014300 144 -----------RETAAIYL----ACGIDNSKASVFVQSHV 168 (427)
Q Consensus 144 -----------~~~~a~~l----A~GiDp~k~~if~QS~v 168 (427)
..+.+.+. -+||++ +++.+|+.
T Consensus 95 PdP~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 95 PDPFGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred CCCccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 33333333 469887 58888874
No 53
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.12 E-value=0.0032 Score=63.78 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=54.5
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.|||||...|+-+|.... +.+...++=|=|.- +. ....+....+..++..+||+++ -..+.|
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar-------~~~G~~iLRieDtD----~~--R~~~~~~~~i~~~L~wlGl~~D-~~~~~Q 74 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFAR-------KYGGKFILRIEDTD----PE--RCRPEFYDAILEDLRWLGLEWD-YGPYYQ 74 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHH-------HTTSEEEEEEETSS----TT--TCHHHHHHHHHHHHHHHT---S-TCEEEG
T ss_pred CCCCCcccchhHHHHHHHHHHh-------ccCceEEEeccccc----cc--cchhhHHHHHHhheeEEEEecC-CeEEeH
Confidence 5789999999999999998871 33445544455532 11 2233555677778888999987 357889
Q ss_pred CCcchh----hHHH----HHHhccccHHHHhhh
Q 014300 166 SHVRAH----VELM----WLLSSATPIGWLNKM 190 (427)
Q Consensus 166 S~v~~~----~eL~----w~L~~~t~i~~l~R~ 190 (427)
|+-.+. .+.. ..+.|.++-.+++..
T Consensus 75 S~r~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~ 107 (314)
T PF00749_consen 75 SDRLEIYQEAAEKLIDKGKAYPCFCSREELKAA 107 (314)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEEESEHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCccccCCHHHHHHH
Confidence 996432 2211 113488877666544
No 54
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.11 E-value=0.0016 Score=62.02 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=78.4
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEE-EEEecccee-ccC-----CCHHHHHH-HHHHHHHHHHH
Q 014300 82 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETL-FFIVDLHAI-TLP-----YDTQQLSK-ATRETAAIYLA 152 (427)
Q Consensus 82 ~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~-i~IaDlhA~-t~~-----~~~~~l~~-~~~~~~a~~lA 152 (427)
||+=-|+|.+||||..+++-- +.+.+++. .|++|+ ....|.|.. +.. ..|.++.+ ....+..+|.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vig-----D~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIG-----DSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGR 80 (212)
T ss_pred ecCCCCCCCccccccHHHHHH-----HHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677779999999998764321 11112222 367764 334444422 110 12333333 33467778888
Q ss_pred cCccCCceEEEEcCCcchhhHHHHH-Hh--ccc--cHHHH-hhhhhHHHHHHhhCCCCc---ccccchhhH---HHHhhh
Q 014300 153 CGIDNSKASVFVQSHVRAHVELMWL-LS--SAT--PIGWL-NKMIQFKEKSHKAGGENV---GVALLTYPV---LMASDI 220 (427)
Q Consensus 153 ~GiDp~k~~if~QS~v~~~~eL~w~-L~--~~t--~i~~l-~R~~~~k~~~~~~~~~~~---~~g~l~YPv---LQAADI 220 (427)
+|+.++ .++.-|+........|- |. ... .-|.. -....|++ . .+-+ +=|..+|.. -.+.|=
T Consensus 81 L~i~~d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~----~-~d~vl~rsdG~~~Y~~~DlA~~~~~ 153 (212)
T cd00671 81 LDVRFD--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD----D-KDRVLVRSDGTYTYFTRDIAYHLDK 153 (212)
T ss_pred hCCcCc--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC----C-CCeEEEECCCCccchHHHHHHHHHH
Confidence 999875 35555554221111111 11 000 00000 00001100 0 0000 226666752 222222
Q ss_pred hccccceE--ecccchHHHHHHHHHHHHHHh
Q 014300 221 LLYQSDFV--PVGEDQKQHLELTRELAERVN 249 (427)
Q Consensus 221 ll~~adlv--pvG~DQ~qh~eLaRdiA~r~n 249 (427)
+.+++|.+ .+|.||..|+.-.+.+++.++
T Consensus 154 ~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 154 FERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred HhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 23578888 999999999999999999876
No 55
>PLN02859 glutamine-tRNA ligase
Probab=97.01 E-value=0.002 Score=72.00 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=59.6
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 81 i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
|.+=| .|||.+||||.-.++.+|...+ +.+..+++=+=| . ++. ....+....+..++.-+|++|+
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar-------~~~G~~~LRieD-T---dp~--r~~~e~~~~I~edL~WLG~~~d 331 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAK-------ERGGCCYLRFDD-T---NPE--AEKKEYIDHIEEIVEWMGWEPF 331 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEecC-C---CCC--ccchHHHHHHHHHHHHcCCCCC
Confidence 44444 5679999999999999998761 234455444444 2 221 2334555667777788899998
Q ss_pred ceEEEEcCCcc-hhhHHHHH-------HhccccHHHHh
Q 014300 159 KASVFVQSHVR-AHVELMWL-------LSSATPIGWLN 188 (427)
Q Consensus 159 k~~if~QS~v~-~~~eL~w~-------L~~~t~i~~l~ 188 (427)
+ ++.||+.. .+.+.+-. +.|.++-.+++
T Consensus 332 ~--~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~ 367 (788)
T PLN02859 332 K--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 367 (788)
T ss_pred C--cccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHH
Confidence 5 68999976 34333322 34788776664
No 56
>PLN02907 glutamate-tRNA ligase
Probab=96.61 E-value=0.018 Score=64.51 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred eEEEecC--CCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
.|.+=|. |||.+||||.-.++-+|.... +.+..+++=|=|. ++. ....+....+..++.-+|+++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar-------~~~G~~iLR~eDT----dp~--r~~~e~~~~I~~dl~wLG~~~ 279 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFAR-------RYKGKLIVRFDDT----NPS--KESDEFVENILKDIETLGIKY 279 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEecCC----CCC--cCChHHHHHHHHHHHHcCCCC
Confidence 4555555 569999999999999998761 3344554444442 221 223345566777888899999
Q ss_pred CceEEEEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014300 158 SKASVFVQSHVRA-HVELMWL-------LSSATPIGWLN 188 (427)
Q Consensus 158 ~k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~ 188 (427)
++ ++.||+..+ +.+.+-. +.|.++..+++
T Consensus 280 d~--~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~ 316 (722)
T PLN02907 280 DA--VTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMR 316 (722)
T ss_pred CC--cccccccHHHHHHHHHHHHHcCCeeecCCCHHHHH
Confidence 85 689999754 2222211 34777776664
No 57
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.59 E-value=0.0053 Score=61.94 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=45.2
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-cccceE-EEEEeccceecc-------CCCH-HHHHHHHHHHHHHHHHcCcc
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGID 156 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~t~-------~~~~-~~l~~~~~~~~a~~lA~GiD 156 (427)
|+|.+||||..+.+. .++ +-+++ ..|++| +++-.|.|..-. ..++ +-..+....+.+++.++|+.
T Consensus 11 ~ng~~HiGH~~~~v~--~Dv---~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~ 85 (314)
T cd00812 11 PSGALHVGHVRTYTI--GDI---IARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFS 85 (314)
T ss_pred CCCCccccchHHHHH--HHH---HHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 579999999876432 222 22332 337777 445666664321 1134 33445556778888899997
Q ss_pred CCceEEEEcCCcchhhH
Q 014300 157 NSKASVFVQSHVRAHVE 173 (427)
Q Consensus 157 p~k~~if~QS~v~~~~e 173 (427)
++- ..+..+..++|.+
T Consensus 86 ~d~-~~~~~t~~~~~~~ 101 (314)
T cd00812 86 YDW-RREFTTCDPEYYK 101 (314)
T ss_pred eec-ccccccCCHHHHH
Confidence 762 2233333444444
No 58
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.33 E-value=0.031 Score=53.57 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=45.1
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEE-Eeccceecc-------CCCH-HHHHHHHHHHHH
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAA 148 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~~~~~a 148 (427)
....+|--|-|.+||||....+ +.++ ..+|+. .|++|++. =.|.|..-. ..++ +-.++++..+.+
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v--~~Dv---l~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~ 96 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYV--VFDV---LRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFE 96 (213)
T ss_pred eEEEeCCccCCCcccccchhHH--HHHH---HHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4556788888999999975322 1222 223332 36787655 345554311 1244 445566677888
Q ss_pred HHHHcCccC
Q 014300 149 IYLACGIDN 157 (427)
Q Consensus 149 ~~lA~GiDp 157 (427)
++.++||.+
T Consensus 97 ~~~~l~i~~ 105 (213)
T cd00672 97 DMKALNVLP 105 (213)
T ss_pred HHHHcCCCC
Confidence 889999986
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.73 E-value=0.032 Score=60.54 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=60.5
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 81 i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
|.+=| .|||.|||||.-.++.+|...+ +.+..+++=|=| . ++. ....+....+..++.-+||+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar-------~~~G~~iLRieD-T---d~~--r~~~e~~~~I~~dL~wLGi~~d 96 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQ-------DYGGKCNLRFDD-T---NPE--KEDQEYVDSIKEDVRWLGFDWS 96 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEECC-C---CCC--cCChHHHHHHHHHHHHcCCCCC
Confidence 44444 4669999999999999998761 224444433443 2 221 2334555677778888999994
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHhh
Q 014300 159 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLNK 189 (427)
Q Consensus 159 k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R 189 (427)
. .+++||+..+ +.+.+.. +.|.++-.++++
T Consensus 97 ~-~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~ 134 (554)
T PRK05347 97 G-ELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIRE 134 (554)
T ss_pred C-CceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHH
Confidence 3 3788999754 4444433 348888776643
No 60
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.47 E-value=0.032 Score=60.61 Aligned_cols=94 Identities=13% Similarity=0.018 Sum_probs=61.0
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 81 i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
+.|=| .|||.|||||...++.+|...+ +.+..+++=|=|. ++. ....+....+..++.-+||+++
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar-------~~gG~~iLRiEDT----Dp~--r~~~e~~~~I~~dL~wLGi~~D 118 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR-------AHGGKCYLRYDDT----NPE--TEEQVYIDAIMEMVKWMGWKPD 118 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEECCC----Ccc--ccChHHHHHHHHHHHHcCCCCC
Confidence 44444 5669999999999999998761 3344554444442 221 2344566677888888999998
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHhh
Q 014300 159 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLNK 189 (427)
Q Consensus 159 k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R 189 (427)
+ ++.||++.+ +.+.+-. +.|.++-.++++
T Consensus 119 ~--~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 119 W--VTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred C--CCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 5 568999765 3332222 348888776653
No 61
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.22 E-value=0.059 Score=58.17 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=58.5
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 165 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if~Q 165 (427)
.|||.|||||...|+.+|...+ +.+..+++=|=|. ++ .....+....+..++.-+|++++. .+++|
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~-------~~~G~~iLRieDT----d~--~r~~~e~~~~I~~dL~wLG~~~d~-~~~~q 73 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAK-------YYNGTCNLRFDDT----NP--VKEDPEYVESIKRDVEWLGFKWEG-KIRYS 73 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEEcCC----Cc--ccCChHHHHHHHHHHHHcCCCCCC-CceEc
Confidence 5889999999999999998761 3344454444442 22 123335566777888889999952 36789
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHhhh
Q 014300 166 SHVRA-HVELMWL-------LSSATPIGWLNKM 190 (427)
Q Consensus 166 S~v~~-~~eL~w~-------L~~~t~i~~l~R~ 190 (427)
|+..+ +.+.+-. +.|.++-.++++.
T Consensus 74 S~~~~~~~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 74 SDYFDELYRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred cccHHHHHHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 99754 3332222 3488887666543
No 62
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=95.20 E-value=0.18 Score=53.78 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=45.7
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEe-ccceec--c-----CCCHH-HHHHHHHHHHH
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIV-DLHAIT--L-----PYDTQ-QLSKATRETAA 148 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~Ia-DlhA~t--~-----~~~~~-~l~~~~~~~~a 148 (427)
....+|.-|-|.+||||..+.+.. ++ +.+|+.. |++|.+... |.|.-- . ..++. -...++..+..
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~--Dv---l~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVF--DV---LRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred eEEEecCccCCCcccccchHHHHH--HH---HHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456678888899999997654321 11 2234333 788865543 555321 0 12443 33455567788
Q ss_pred HHHHcCccCCc
Q 014300 149 IYLACGIDNSK 159 (427)
Q Consensus 149 ~~lA~GiDp~k 159 (427)
++.++|+.++.
T Consensus 98 dl~~LgI~~d~ 108 (465)
T TIGR00435 98 DMKALNVLPPD 108 (465)
T ss_pred HHHHhCCCCCc
Confidence 88899997543
No 63
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.19 E-value=0.049 Score=59.29 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=61.1
Q ss_pred eEEEecC--CCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
.+.+=|. |||.+||||...++-+|...+ +.+..+++=+=|. ++. ....+....+..++..+|+++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar-------~~~G~~iLRidDT----Dp~--R~~~e~~~~I~edL~wLGi~~ 159 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK-------KYKGKLIIRFDDT----DPR--RVKPEAYDMILEDLDWLGVKG 159 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH-------hcCCEEEEEeCcC----Ccc--cccHHHHHHHHHHHHHcCCCC
Confidence 4566665 559999999999999988761 2244454445443 221 333456667788888999999
Q ss_pred CceEEEEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014300 158 SKASVFVQSHVRA-HVELMWL-------LSSATPIGWLN 188 (427)
Q Consensus 158 ~k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~ 188 (427)
+ .++.||+..+ +.+..-. +.|.++-.+++
T Consensus 160 d--~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 160 D--EVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred C--ccccccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 8 4789999653 3222222 35888877664
No 64
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=94.72 E-value=0.081 Score=59.64 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=60.3
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 80 ~i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
.|.|=| .|||.+||||...++-+|...+ +.+..+++=|=|. ++. ....+....+..++.-+|+++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~-------~~~G~~~LR~eDT----d~~--r~~~e~~~~I~~dl~wLG~~w 97 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIAR-------DYGGRCHLRMDDT----NPE--TEDTEYVEAIKDDVRWLGFDW 97 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEeCCC----CCC--cCChHHHHHHHHHHHHcCCCC
Confidence 355555 4569999999999999998761 2344444444442 221 233455567777888899998
Q ss_pred CceEEEEcCCcch-hhHHH-HH------HhccccHHHHhhh
Q 014300 158 SKASVFVQSHVRA-HVELM-WL------LSSATPIGWLNKM 190 (427)
Q Consensus 158 ~k~~if~QS~v~~-~~eL~-w~------L~~~t~i~~l~R~ 190 (427)
+. .++.||+..+ +.+.+ .+ +.|.++-.++++.
T Consensus 98 d~-~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 98 GE-HLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred CC-CceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 64 2688999754 22222 12 3588886666433
No 65
>PLN02946 cysteine-tRNA ligase
Probab=93.58 E-value=0.66 Score=50.70 Aligned_cols=71 Identities=23% Similarity=0.055 Sum_probs=42.9
Q ss_pred chhhHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014300 210 LTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 288 (427)
Q Consensus 210 l~YPvLQAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg 288 (427)
-+=..-|+...|-..-||--+|.|-. ||+|- ++|+..- .+|. .+..- -++. .+|. + +|
T Consensus 263 HIECSaMs~~~lG~~~DIH~GG~DL~FPHHEN--EiAQsea-~~g~------------~~a~y-W~H~---G~v~-~-~G 321 (557)
T PLN02946 263 HIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN--EIAQSCA-ACCD------------SNISY-WIHN---GFVT-V-DS 321 (557)
T ss_pred HHHHHHHHHHHcCCCeeEeccccccCCCcccc--hHHHHHH-HhCC------------CCCce-eeEe---eEEE-e-CC
Confidence 34446788888888899999999964 67765 3444321 1231 11111 1332 2554 4 56
Q ss_pred CCccccCCCCCCceeec
Q 014300 289 LSKMSKSAPSDQSRINL 305 (427)
Q Consensus 289 ~~KMSKS~p~~~s~I~L 305 (427)
+|||||. +|.|.+
T Consensus 322 -~KMSKSl---GN~itl 334 (557)
T PLN02946 322 -EKMSKSL---GNFFTI 334 (557)
T ss_pred -CCcCCcC---CCcCCH
Confidence 6999997 567766
No 66
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=90.13 E-value=0.69 Score=48.14 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=42.2
Q ss_pred cccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHH
Q 014300 280 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVA 356 (427)
Q Consensus 280 ~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~ 356 (427)
+.++++ || .|||||. +++|++++++.+.+.+++.... ...-.|++++++.+.+||+
T Consensus 212 pLl~~~-dg-~KmgKS~---~~~i~l~~~~~~~~i~~~d~~D----------------~~~~Ki~k~~t~~~~~ei~ 267 (377)
T TIGR00234 212 PLLTPA-DG-EKMGKSG---GGAVSLDEGKYDFYQFWINTPD----------------EDVKKILKLFTFLGLEEIE 267 (377)
T ss_pred eeecCC-CC-CCccCCC---CCcccCCccHhhhhhhhcCCcH----------------HHHHHHHHHcCCCcHHHHH
Confidence 588888 56 6999996 5899999998777776643221 3466788888888888876
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=89.51 E-value=0.85 Score=50.92 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=53.4
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEEEe-ccceecc-------CCCH-HHHHHHHHHH
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFIV-DLHAITL-------PYDT-QQLSKATRET 146 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~Ia-DlhA~t~-------~~~~-~~l~~~~~~~ 146 (427)
+..|-|++ -|+|.+||||....+.. ++ +.+|+ ..|++|+++.+ |-|..-. ..++ +-..+++..+
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~a--Dv---~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~ 77 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQA--DI---WVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEH 77 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHH--HH---HHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45677777 68999999998754322 11 22443 34788866644 4444321 1244 4455666788
Q ss_pred HHHHHHcCccCCceEEEEcCCcchhh
Q 014300 147 AAIYLACGIDNSKASVFVQSHVRAHV 172 (427)
Q Consensus 147 ~a~~lA~GiDp~k~~if~QS~v~~~~ 172 (427)
.++|.++|++++. |....-++|.
T Consensus 78 ~~~~~~l~i~~d~---f~rtt~~~h~ 100 (673)
T PRK00133 78 KRDFAGFGISFDN---YGSTHSEENR 100 (673)
T ss_pred HHHHHHhCCCCCC---CccCCcHHHH
Confidence 8899999998873 4444444443
No 68
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=86.84 E-value=1.7 Score=47.26 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=46.7
Q ss_pred eEEEecCCC--CcchhhhhHHH-HHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCH-HHHHHHHHHH
Q 014300 80 RIVSGVQPT--GSIHLGNYLGA-IKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRET 146 (427)
Q Consensus 80 ~i~sGi~PT--G~lHLGnylga-ik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~~~~ 146 (427)
.+++.-=|+ |.+||||..+. +.. ++ +.+|+ ..|++|++. =.|.|..-. ..++ +-..+++..+
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~--D~---~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 79 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPA--DV---FARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEH 79 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHH--HH---HHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555566 99999998875 211 11 11222 247887554 556664432 1244 4446677888
Q ss_pred HHHHHHcCccCCc
Q 014300 147 AAIYLACGIDNSK 159 (427)
Q Consensus 147 ~a~~lA~GiDp~k 159 (427)
.+++.++|++++.
T Consensus 80 ~~~~~~l~i~~d~ 92 (556)
T PRK12268 80 KEDFKKLGISYDL 92 (556)
T ss_pred HHHHHHcCCcCCC
Confidence 8999999999873
No 69
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=86.67 E-value=1.8 Score=45.21 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccc-cccceE-EEEEeccceecc-------CCCHH-HHHHHHHHHHHHHHHcCc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGI 155 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~t~-------~~~~~-~l~~~~~~~~a~~lA~Gi 155 (427)
-|.|.|||||....+.- +. ..+|+ +.|+++ ++.-.|-|..-. ..+|+ -..++...+.++|.++||
T Consensus 9 Y~Ng~lHlGH~~~~l~A--Dv---~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I 83 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAA--DV---LARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNI 83 (391)
T ss_dssp ETSSS-BHHHHHHHHHH--HH---HHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCCCCChhHHHHHH--HH---HHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999997643321 11 12333 347886 556889998753 23564 455666778888999999
Q ss_pred cCCceEEEEcCCcchhh
Q 014300 156 DNSKASVFVQSHVRAHV 172 (427)
Q Consensus 156 Dp~k~~if~QS~v~~~~ 172 (427)
+.+ .|.++.-++|.
T Consensus 84 ~~D---~F~rTt~~~h~ 97 (391)
T PF09334_consen 84 SYD---RFIRTTDDRHK 97 (391)
T ss_dssp --S---EEEETTSHHHH
T ss_pred CCc---ceeCCCCHHHH
Confidence 998 46666544553
No 70
>PLN02224 methionine-tRNA ligase
Probab=85.51 E-value=2.5 Score=46.93 Aligned_cols=76 Identities=8% Similarity=0.034 Sum_probs=49.5
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEE-EEEeccceec--c-----CCCH-HHHHHHHHHH
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETL-FFIVDLHAIT--L-----PYDT-QQLSKATRET 146 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~-i~IaDlhA~t--~-----~~~~-~~l~~~~~~~ 146 (427)
+..|-|++ -|+|.+||||..+.+.. ++ +-+|+ ..|++|+ ++-.|-|..- . ..++ +..++++..+
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~a--Dv---iaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~ 144 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAA--DS---IARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSY 144 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHH--HH---HHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHH
Confidence 35667777 77899999998754321 11 22332 3478874 4567888632 1 1233 5566677778
Q ss_pred HHHHHHcCccCC
Q 014300 147 AAIYLACGIDNS 158 (427)
Q Consensus 147 ~a~~lA~GiDp~ 158 (427)
.+.+.++||+++
T Consensus 145 ~~~~~~l~I~~D 156 (616)
T PLN02224 145 RTLWKDLDIAYD 156 (616)
T ss_pred HHHHHHcCCCCC
Confidence 888899999987
No 71
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=83.31 E-value=0.92 Score=52.46 Aligned_cols=59 Identities=27% Similarity=0.264 Sum_probs=35.8
Q ss_pred hccccceEecccchH---HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 221 LLYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 221 ll~~adlvpvG~DQ~---qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
..+-+|+...|.||. .|-.+-..++- .| .+.|..++.- .++... +| +|||||.
T Consensus 542 ~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g--------------~~P~k~vl~H--G~vld~-~G-~KMSKSl- 597 (912)
T PRK05743 542 LGYPADLYLEGSDQHRGWFQSSLLTSVAT-----RG--------------KAPYKQVLTH--GFTVDG-KG-RKMSKSL- 597 (912)
T ss_pred cCCCceEEEecccccchHHHHHHHHHHHh-----cC--------------CCccceeEEe--eeEECC-CC-CCCCCCC-
Confidence 345689999999997 44455555443 22 1233444432 255554 46 7999997
Q ss_pred CCCceeec
Q 014300 298 SDQSRINL 305 (427)
Q Consensus 298 ~~~s~I~L 305 (427)
+|.|..
T Consensus 598 --GNvIdP 603 (912)
T PRK05743 598 --GNVIDP 603 (912)
T ss_pred --CCcCCH
Confidence 566654
No 72
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.66 E-value=3.2 Score=45.45 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=49.2
Q ss_pred CCCCcchhhhhHHHHHH--HHHhcccccccccccceE-EEEEeccceecc-------CCCHH-HHHHHHHHHHHHHHHcC
Q 014300 86 QPTGSIHLGNYLGAIKN--WIALQPFCDLMLQNSYET-LFFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACG 154 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~--~~~l~~~~~~~~Q~~~~~-~i~IaDlhA~t~-------~~~~~-~l~~~~~~~~a~~lA~G 154 (427)
-|.|.+||||....|.- |..++ -..|+++ |++-.|-|..-. ..+|+ -+.++......+|.+++
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~------Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~ 88 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYL------RLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALN 88 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHH------HhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 46799999997654432 22220 1347887 455677786532 23664 44566677888999999
Q ss_pred ccCCceEEEEcCCcchhhH
Q 014300 155 IDNSKASVFVQSHVRAHVE 173 (427)
Q Consensus 155 iDp~k~~if~QS~v~~~~e 173 (427)
|+-+ .|....-+.|.+
T Consensus 89 IsfD---~F~rTt~~~h~~ 104 (558)
T COG0143 89 ISFD---NFIRTTSPEHKE 104 (558)
T ss_pred Cccc---ccccCCCHHHHH
Confidence 9866 455555554443
No 73
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.30 E-value=3.4 Score=44.88 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=43.1
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccce-EEEEEeccceeccCC-CHHHHHHHHHHHHHHHHHcCc
Q 014300 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYE-TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGI 155 (427)
Q Consensus 80 ~i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~-~~i~IaDlhA~t~~~-~~~~l~~~~~~~~a~~lA~Gi 155 (427)
.|++-| +|||.+||||.--|+.|+... ..|+ -.|.-=|. |+|. +-++... .+..++--+||
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa---------~~~~G~LIvRFDD---TNPaKE~~eFe~---~IleDl~~LgI 264 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFA---------QAYQGKLIVRFDD---TNPAKENEEFED---VILEDLSLLGI 264 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHH---------HhcCceEEEEecC---CCcchhhHHHHH---HHHHHHHHhCc
Confidence 455554 778999999998777776654 4332 23333333 3442 3344443 34455556799
Q ss_pred cCCceEEEEcCCcc
Q 014300 156 DNSKASVFVQSHVR 169 (427)
Q Consensus 156 Dp~k~~if~QS~v~ 169 (427)
.|+++ =.-||+.
T Consensus 265 kpd~~--TyTSDyF 276 (712)
T KOG1147|consen 265 KPDRV--TYTSDYF 276 (712)
T ss_pred Cccee--eechhhH
Confidence 99964 3456654
No 74
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.18 E-value=1.6 Score=44.66 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-cccceEE-EEEecccee
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETL-FFIVDLHAI 130 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~-i~IaDlhA~ 130 (427)
|+|.+||||..+.+-. ++ +.+|+ ..|++|+ +.-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~--Dv---l~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILK--DI---INRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHH--HH---HHHHHHhcCCccCCcCCcCCCCc
Confidence 4699999998864321 22 22333 2367874 456676655
No 75
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=79.15 E-value=1.2 Score=51.50 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=34.1
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhh--hcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 223 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 223 ~~adlvpvG~DQ~q-h~eLaRdiA~r~n~~--yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
|-+|+...|.||.. |+-+.. |++. ++. -+-|..++.. .+|.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999976 555442 3332 221 1334444432 24432 56 7999997
Q ss_pred CceeecC
Q 014300 300 QSRINLL 306 (427)
Q Consensus 300 ~s~I~L~ 306 (427)
+|.|.+.
T Consensus 583 GNvVdp~ 589 (897)
T PRK12300 583 GNVIPLR 589 (897)
T ss_pred CCCCCHH
Confidence 6777654
No 76
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=78.94 E-value=20 Score=39.96 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=40.0
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-cccceE-EEEEeccceecc-------CCCH-HHHHHHHHHHHHHHHHcCcc
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGID 156 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~t~-------~~~~-~~l~~~~~~~~a~~lA~GiD 156 (427)
|+|.+||||..+.+.. ++ +.+|+ ..|++| +++-.|.|..-. ..++ +-...+...+..+|.++|++
T Consensus 15 ~ng~~HiGH~~~~~~a--Dv---~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~ 89 (648)
T PRK12267 15 PNGKPHIGHAYTTIAA--DA---LARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDIS 89 (648)
T ss_pred CCCCcccccchHHHHH--HH---HHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4599999998654321 11 22333 337776 555778776532 1244 33444555677788888887
Q ss_pred CC
Q 014300 157 NS 158 (427)
Q Consensus 157 p~ 158 (427)
++
T Consensus 90 ~D 91 (648)
T PRK12267 90 YD 91 (648)
T ss_pred CC
Confidence 65
No 77
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=78.94 E-value=1.4 Score=45.83 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=33.9
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
+.+|+...|.||...+-.. .++...- ..| ..| ..++.- ..+.++ +| +|||||. +|
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h--g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH--GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee--eeEECC-CC-CCccccC---CC
Confidence 4579999999998654333 3333221 112 123 222211 255555 45 6999997 67
Q ss_pred eeecC
Q 014300 302 RINLL 306 (427)
Q Consensus 302 ~I~L~ 306 (427)
.|.+.
T Consensus 351 ~v~~~ 355 (382)
T cd00817 351 VIDPL 355 (382)
T ss_pred CCCHH
Confidence 87763
No 78
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=78.91 E-value=1.1 Score=48.03 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=39.2
Q ss_pred CCCcchhhhhHHHHHHHHHhccccccccc-ccceEEE-EEeccceecc-------CCCH-HHHHHHHHHHHHHHHHcCcc
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGID 156 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i-~IaDlhA~t~-------~~~~-~~l~~~~~~~~a~~lA~GiD 156 (427)
|+|.+||||....+ +.++ +.+++. .|++|.+ +-.|.|..-. ..++ +..+.+...+.+++.++|++
T Consensus 12 ~~g~~HiGh~~~~~--~~Dv---~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~ 86 (511)
T PRK11893 12 PNGKPHIGHAYTTL--AADV---LARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNIS 86 (511)
T ss_pred CCCCcccchhHHHH--HHHH---HHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46999999965422 1122 234433 3777744 4556664321 1234 44455556778888899998
Q ss_pred CC
Q 014300 157 NS 158 (427)
Q Consensus 157 p~ 158 (427)
++
T Consensus 87 ~D 88 (511)
T PRK11893 87 YD 88 (511)
T ss_pred cC
Confidence 76
No 79
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=78.06 E-value=1.7 Score=51.06 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=38.7
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
|-+|+...|.||. ++=++|-++..+... | +.| ..++.. .+|..- +| +|||||. ||
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHFM-G---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHhc-C---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 4578999999998 456777777655421 1 234 333322 255443 45 7999997 67
Q ss_pred eeecCC
Q 014300 302 RINLLD 307 (427)
Q Consensus 302 ~I~L~D 307 (427)
.|+..|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 887654
No 80
>PLN02610 probable methionyl-tRNA synthetase
Probab=77.78 E-value=8.6 Score=44.02 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCceEEEec-CCCCcchhhhhHHH-HH--HHHHhcccccccccccceEEEE-Eeccceecc-------CCCH-HHHHHHH
Q 014300 77 VKKRIVSGV-QPTGSIHLGNYLGA-IK--NWIALQPFCDLMLQNSYETLFF-IVDLHAITL-------PYDT-QQLSKAT 143 (427)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnylga-ik--~~~~l~~~~~~~~Q~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~ 143 (427)
++..|-|.+ -|+|.+||||..|. +. -+...+ -..|++|+|+ -.|-|..-. ..++ +-..++.
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~------r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~ 90 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYC------RLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYH 90 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHH------HhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444444 35699999999874 31 122220 1347887555 667787643 2255 4445555
Q ss_pred HHHHHHHHHcCccCCceEEEEcCCcchhhH
Q 014300 144 RETAAIYLACGIDNSKASVFVQSHVRAHVE 173 (427)
Q Consensus 144 ~~~~a~~lA~GiDp~k~~if~QS~v~~~~e 173 (427)
..+...|.++||+.+. |....-++|.+
T Consensus 91 ~~~~~~~~~l~i~~D~---f~rT~~~~h~~ 117 (801)
T PLN02610 91 AIHKEVYDWFDISFDK---FGRTSTPQQTE 117 (801)
T ss_pred HHHHHHHHHcCCcccc---CccCCCHHHHH
Confidence 6777888999999873 33444445543
No 81
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=77.21 E-value=1.5 Score=50.89 Aligned_cols=70 Identities=27% Similarity=0.340 Sum_probs=39.3
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhh--hcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 223 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 223 ~~adlvpvG~DQ~q-h~eLaRdiA~r~n~~--yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
|-+|+...|.||.+ |+.+. + |++. ++. . +-|..++.. ..|.. +| +|||||.
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i---~~~~a~~~~-----------~--~~Pk~i~~~--G~vl~--~G-~KMSKSl--- 625 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--I---FHHVAIFPE-----------K--FWPRGIVVN--GYVML--EG-KKMSKSK--- 625 (938)
T ss_pred CCceEEEEeeccccchHHHH--H---HHHHHcCCc-----------c--ccCcEEEEe--ceEEe--CC-ccccCcC---
Confidence 45799999999976 66544 2 2222 111 0 124444432 23332 56 7999997
Q ss_pred CceeecCC-----CHHHHHHHhhh
Q 014300 300 QSRINLLD-----PKDVIANKIKR 318 (427)
Q Consensus 300 ~s~I~L~D-----spe~I~kKI~k 318 (427)
+|.|.+.| .+|.++==+..
T Consensus 626 GNvI~p~d~i~~yGaDalRl~Ll~ 649 (938)
T TIGR00395 626 GNVLTLEQAVEKFGADVARLYIAD 649 (938)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHh
Confidence 67887653 34455544443
No 82
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=77.00 E-value=1.9 Score=47.20 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=49.0
Q ss_pred ccchhhHHHHhhhhcc------ccc--eEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc-eecCCC
Q 014300 208 ALLTYPVLMASDILLY------QSD--FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPA 278 (427)
Q Consensus 208 g~l~YPvLQAADIll~------~ad--lvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~-~l~~~~ 278 (427)
|-.+| .+.||-+. ++| +-.+|.||..|+.-...+++.++ ++.|. ..+...
T Consensus 307 Gt~~Y---~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h~~~ 365 (566)
T TIGR00456 307 GTYLY---LTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIHLNF 365 (566)
T ss_pred CCcee---chhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEEEEE
Confidence 44455 45666543 244 56799999999999999999865 33342 222111
Q ss_pred CcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 014300 279 GARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 314 (427)
Q Consensus 279 ~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 314 (427)
.+| .+ .|||||. ++.|.+.|=.++..+
T Consensus 366 -~~V----~~-~kmSkr~---Gn~V~~~dll~~~~~ 392 (566)
T TIGR00456 366 -GMV----PL-GSMKTRR---GNVISLDNLLDEASK 392 (566)
T ss_pred -EEE----EC-CCCCccC---CceeeHHHHHHHHHH
Confidence 122 23 5999997 789999865555444
No 83
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=75.75 E-value=3.9 Score=41.25 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-cccceEEE-EEeccceecc-------CCCHHHH-HHHHHHHHHHHHHcCcc
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIYLACGID 156 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t~-------~~~~~~l-~~~~~~~~a~~lA~GiD 156 (427)
|+|.+||||..+.+-. ++ +.+|+ ..|++|++ .-.|.|..-. ..+++++ +.+...+.+++.++|++
T Consensus 11 ~ng~~HlGH~~~~~~~--Dv---~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 85 (319)
T cd00814 11 VNGVPHLGHLYGTVLA--DV---FARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNIS 85 (319)
T ss_pred CCCCcchhhHHHHHHH--HH---HHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 4599999999875533 22 22343 23677754 4567775432 1255444 44456778888899998
Q ss_pred CCc
Q 014300 157 NSK 159 (427)
Q Consensus 157 p~k 159 (427)
++.
T Consensus 86 ~D~ 88 (319)
T cd00814 86 FDY 88 (319)
T ss_pred CCC
Confidence 874
No 84
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=75.01 E-value=7.2 Score=41.69 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=36.0
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
+.+|+...|.||...+-.. .+|.-.. .| .+.|..++.. .++. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3578999999998853221 1222211 12 2456555543 2443 4 56 6999997 688
Q ss_pred eecCC
Q 014300 303 INLLD 307 (427)
Q Consensus 303 I~L~D 307 (427)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 88744
No 85
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=74.38 E-value=2.3 Score=48.88 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.8
Q ss_pred cccceEecccchHH
Q 014300 223 YQSDFVPVGEDQKQ 236 (427)
Q Consensus 223 ~~adlvpvG~DQ~q 236 (427)
+-+|+...|.||..
T Consensus 563 ~P~d~~i~G~Di~r 576 (861)
T TIGR00392 563 FPADFILEGSDQTR 576 (861)
T ss_pred CCceEEEEecchhc
Confidence 45799999999965
No 86
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=73.13 E-value=9.5 Score=43.69 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=47.5
Q ss_pred CceEEEecCCC--CcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCC-HHHHHHHHHH
Q 014300 78 KKRIVSGVQPT--GSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYD-TQQLSKATRE 145 (427)
Q Consensus 78 ~~~i~sGi~PT--G~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~-~~~l~~~~~~ 145 (427)
+..+++|. |+ |.+|+||.++-+.. ++ +-+|. ..|++|.+. -.|-|.+-. ..+ .+-..+++..
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~--Di---i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 106 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIG--DV---IARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIAN 106 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHH--HH---HHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56777776 76 99999998864322 22 22222 347887544 566666532 113 3555667778
Q ss_pred HHHHHHHcCccCC
Q 014300 146 TAAIYLACGIDNS 158 (427)
Q Consensus 146 ~~a~~lA~GiDp~ 158 (427)
+..++.++|+..+
T Consensus 107 ~~~~~~~lGi~~D 119 (805)
T PRK00390 107 MKKQLKSLGFSYD 119 (805)
T ss_pred HHHHHHHhCCccc
Confidence 8889999999655
No 87
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=72.10 E-value=2.8 Score=48.26 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=37.8
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
.|-+|+...|.||... =++|-++..... .| +.| ..++.. ..|-.. +| +|||||. |
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH--GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe--eeEECC-CC-CCcccCC---C
Confidence 3567999999999874 566666554321 11 245 222221 255554 56 6999997 6
Q ss_pred ceeecCC
Q 014300 301 SRINLLD 307 (427)
Q Consensus 301 s~I~L~D 307 (427)
|.|...|
T Consensus 527 NvIdP~d 533 (874)
T PRK05729 527 NVIDPLD 533 (874)
T ss_pred CCCCHHH
Confidence 7776643
No 88
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=71.13 E-value=3.8 Score=42.87 Aligned_cols=70 Identities=26% Similarity=0.224 Sum_probs=42.9
Q ss_pred hHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014300 213 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 291 (427)
Q Consensus 213 PvLQAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 291 (427)
..-|+..+|--.-|+--+|.|-. +|+|- ++|+.. ..+|.. +-+...+.. ..| .. +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHen--eiaq~~-a~~g~~-------------~~~~~w~H~--g~l-~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHEF--SAAHAE-AATGER-------------RFARHYVHA--GMI-GL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhHh--HHHHHH-HhcCCC-------------CcceEEEEC--CEE-CC-CC-Cc
Confidence 46788888887899999999965 66654 444432 123421 123344433 132 33 56 69
Q ss_pred cccCCCCCCceeecC
Q 014300 292 MSKSAPSDQSRINLL 306 (427)
Q Consensus 292 MSKS~p~~~s~I~L~ 306 (427)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99997 5777764
No 89
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=70.94 E-value=7 Score=43.45 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=38.2
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCcee
Q 014300 224 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 303 (427)
Q Consensus 224 ~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 303 (427)
.+|+...|.||..++-+-= .-+-...| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 3678889999987543310 01100012 5567666543 1332 2 45 7999997 6788
Q ss_pred ecCC-----CHHHHHHHhh
Q 014300 304 NLLD-----PKDVIANKIK 317 (427)
Q Consensus 304 ~L~D-----spe~I~kKI~ 317 (427)
+..| ++|.++==+.
T Consensus 309 ~p~d~l~~ygaD~lR~~L~ 327 (648)
T PRK12267 309 DPEELVDRYGLDALRYYLL 327 (648)
T ss_pred CHHHHHHHcCCcHHHHHHH
Confidence 7654 3445544443
No 90
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.92 E-value=8.7 Score=43.98 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCceEEEec-CCCCcchhhhhHHH-----HHHHHHhcccccccccccceEEEEEeccceeccC---------CCH-HHHH
Q 014300 77 VKKRIVSGV-QPTGSIHLGNYLGA-----IKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP---------YDT-QQLS 140 (427)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnylga-----ik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~---------~~~-~~l~ 140 (427)
.++.|..-+ -|||.+|+||..+- +.-+.. ..|++|.+-++ |||+=.| .+| .-..
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykR---------m~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~ 103 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKR---------MQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTY 103 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHH---------hcCCeecccCc-ccccCchHHHHHHHhCCChHHHHH
Confidence 466666666 58999999996432 111222 24788887776 8887543 244 4456
Q ss_pred HHHHHHHHHHHHcCccCCceEEEEcCC
Q 014300 141 KATRETAAIYLACGIDNSKASVFVQSH 167 (427)
Q Consensus 141 ~~~~~~~a~~lA~GiDp~k~~if~QS~ 167 (427)
.++.++...+.++|+.-|=..=|.=.|
T Consensus 104 ~ni~~~k~qlk~lG~siDW~Ref~T~D 130 (814)
T COG0495 104 YNIAYMKKQLKSLGFSIDWRREFATCD 130 (814)
T ss_pred HHHHHHHHHHHHhCCccccccceecCC
Confidence 677788888889888666444444444
No 91
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=70.66 E-value=6.2 Score=42.59 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=40.1
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCHHH-HHHHHHHHHHHHHHcCcc
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGID 156 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~-l~~~~~~~~a~~lA~GiD 156 (427)
|+|.+||||....+. .++ +.+|+ ..|++|.+. -.|.|..-. ..++.+ ...+...+.+++.++|++
T Consensus 10 ~ng~lHiGH~~~~~~--aDv---l~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 84 (530)
T TIGR00398 10 ANGKPHLGHAYTTIL--ADV---YARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNIS 84 (530)
T ss_pred CCCCcccchhHHHHH--HHH---HHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 789999999874332 122 22333 237887554 555554321 124433 344556778888899988
Q ss_pred CCc
Q 014300 157 NSK 159 (427)
Q Consensus 157 p~k 159 (427)
++.
T Consensus 85 ~D~ 87 (530)
T TIGR00398 85 FDR 87 (530)
T ss_pred CCC
Confidence 753
No 92
>PLN02943 aminoacyl-tRNA ligase
Probab=68.97 E-value=4.4 Score=47.23 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=37.4
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc--eecCCCCcccccCCCCCCccccCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~--~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
+|-+|+...|.||. .+=++|-++.-.. ..| +.|. .+++. .+... +| +|||||.
T Consensus 534 ~yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~hg---~v~~~-~G-~KMSKS~--- 588 (958)
T PLN02943 534 FYPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLHG---LIRDS-QG-RKMSKTL--- 588 (958)
T ss_pred cCCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEec---cEECC-CC-CcccCcC---
Confidence 35579999999998 5677776664221 112 2352 23322 44444 45 7999997
Q ss_pred CceeecCC
Q 014300 300 QSRINLLD 307 (427)
Q Consensus 300 ~s~I~L~D 307 (427)
||.|...|
T Consensus 589 GN~i~p~~ 596 (958)
T PLN02943 589 GNVIDPLD 596 (958)
T ss_pred CCCCCHHH
Confidence 67777654
No 93
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=68.95 E-value=3.1 Score=48.44 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.1
Q ss_pred hccccceEecccchHH
Q 014300 221 LLYQSDFVPVGEDQKQ 236 (427)
Q Consensus 221 ll~~adlvpvG~DQ~q 236 (427)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 4466899999999974
No 94
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=68.89 E-value=21 Score=38.72 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=44.7
Q ss_pred CceEE-EecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEE--Eeccceecc----------------CCCH-
Q 014300 78 KKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHAITL----------------PYDT- 136 (427)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA~t~----------------~~~~- 136 (427)
.+++| .|.-+-+.+||||..+.+- .++ +.+|++. |++|++. |+|+--+|. ..++
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~--~Dv---l~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~ 97 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVF--QDT---LRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVL 97 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHH--HHH---HHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHH
Confidence 45554 4766669999999875331 111 2344443 6888766 677711111 1234
Q ss_pred HHHHHHHHHHHHHHHHcCccCC
Q 014300 137 QQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 137 ~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
+....++..+..++.++|+.+.
T Consensus 98 e~a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 98 EIAAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3334555677888889998764
No 95
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=68.66 E-value=4.1 Score=44.96 Aligned_cols=60 Identities=32% Similarity=0.400 Sum_probs=30.5
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
|-+|+..-|.||.... +.+-+....- .++. ..| +..+++ .+|... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~-l~~~-----------~pf--k~v~~h---G~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVA-LFGK-----------EPF--KKVITH---GFVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHH-HSSS-----------TSB--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhH-HHHhHhhccc-cccC-----------Cch--heeeec---cccccc-ce-eecccCC---Ccc
Confidence 5689999999997654 2222222111 1222 123 233333 255554 56 7999997 577
Q ss_pred eec
Q 014300 303 INL 305 (427)
Q Consensus 303 I~L 305 (427)
|.+
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 754
No 96
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=68.16 E-value=4.9 Score=45.86 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=33.4
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
+-+|+...|.||... -+.+-++...- .+| ..| ..++.. ..+... +| +|||||. +|
T Consensus 485 ~P~d~~~~G~Di~~~-w~~~~l~~~~~-~~~---------------~~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN 540 (800)
T PRK13208 485 FPMDLRPQGHDIIRT-WLFYTILRAYL-LTG---------------KLPWKNIMIS--GMVLDP-DG-KKMSKSK---GN 540 (800)
T ss_pred CCceEEEeecchhhh-HHHHHHHHHHH-hcC---------------CCCcceEEEe--eEEECC-CC-CCCCCCC---CC
Confidence 347999999999863 23334433221 122 123 223221 244444 55 6999997 67
Q ss_pred eeecC
Q 014300 302 RINLL 306 (427)
Q Consensus 302 ~I~L~ 306 (427)
.|.+.
T Consensus 541 ~i~p~ 545 (800)
T PRK13208 541 VVTPE 545 (800)
T ss_pred CCCHH
Confidence 77754
No 97
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=66.30 E-value=4.8 Score=46.30 Aligned_cols=62 Identities=31% Similarity=0.404 Sum_probs=36.1
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
.|-+|+...|.||...+ ++|-++.-.. ..| +.| ..++.. ..|... +| +|||||. +
T Consensus 476 ~~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKS~---G 531 (861)
T TIGR00422 476 FYPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH--GLVRDE-QG-RKMSKSL---G 531 (861)
T ss_pred cCCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe--eEEECC-CC-CCCCcCC---C
Confidence 35689999999998764 4455543221 111 234 222221 255544 45 6999997 6
Q ss_pred ceeecCC
Q 014300 301 SRINLLD 307 (427)
Q Consensus 301 s~I~L~D 307 (427)
|.|.+.|
T Consensus 532 N~i~p~~ 538 (861)
T TIGR00422 532 NVIDPLD 538 (861)
T ss_pred CCCCHHH
Confidence 7776643
No 98
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=65.30 E-value=4.5 Score=40.80 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=33.2
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCcee
Q 014300 224 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 303 (427)
Q Consensus 224 ~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 303 (427)
..++..+|.|+..++-+.- .|--.. .| .+.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3578999999998754321 111110 11 3445555433 133 33 45 6999997 6788
Q ss_pred ecC
Q 014300 304 NLL 306 (427)
Q Consensus 304 ~L~ 306 (427)
.+.
T Consensus 290 ~~~ 292 (319)
T cd00814 290 DPD 292 (319)
T ss_pred CHH
Confidence 774
No 99
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=64.72 E-value=5.5 Score=46.54 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.6
Q ss_pred ccccceEecccchHH
Q 014300 222 LYQSDFVPVGEDQKQ 236 (427)
Q Consensus 222 l~~adlvpvG~DQ~q 236 (427)
.+-+|+..-|.||..
T Consensus 543 ~~Pad~~~~G~Di~r 557 (975)
T PRK06039 543 HFPADFIVEGIDQTR 557 (975)
T ss_pred cCCceEEEechhhHh
Confidence 356899999999975
No 100
>PLN02381 valyl-tRNA synthetase
Probab=63.65 E-value=5.8 Score=46.82 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=37.9
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc--eecCCCCcccccCCCCCCccccCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~--~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
.|-+|+..-|-||. ++=++|-+...+.. .| ..|. .+++ .+|-+- +| +|||||.
T Consensus 606 ~~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~--- 660 (1066)
T PLN02381 606 FYPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL--- 660 (1066)
T ss_pred cCCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec---ceEECC-CC-CCCCCCC---
Confidence 35689999999999 56677777554321 12 2342 2222 256554 46 6999997
Q ss_pred CceeecC
Q 014300 300 QSRINLL 306 (427)
Q Consensus 300 ~s~I~L~ 306 (427)
+|.|...
T Consensus 661 GNvIdP~ 667 (1066)
T PLN02381 661 GNVIDPL 667 (1066)
T ss_pred CCCCCHH
Confidence 6777654
No 101
>PLN02959 aminoacyl-tRNA ligase
Probab=63.00 E-value=7 Score=46.24 Aligned_cols=60 Identities=27% Similarity=0.261 Sum_probs=34.0
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhh--hcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~--yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
.|=+|+..-|.||...+- +.-+ |++. +|. -+-|..+... ..|. + +| +|||||.
T Consensus 669 ~yP~Dl~~sG~Dii~~wl-~~~l---~~~~al~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk--- 723 (1084)
T PLN02959 669 WYPFDLRVSGKDLIQNHL-TFAI---YNHTAIWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST--- 723 (1084)
T ss_pred hCCCeEEEecccHHHHHH-HHHH---HHHHHhcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---
Confidence 355899999999977652 3333 3321 221 1223323222 1333 3 56 7999997
Q ss_pred CceeecC
Q 014300 300 QSRINLL 306 (427)
Q Consensus 300 ~s~I~L~ 306 (427)
+|.|.+.
T Consensus 724 GNvI~p~ 730 (1084)
T PLN02959 724 GNFLTLR 730 (1084)
T ss_pred CCcCCHH
Confidence 6777664
No 102
>PLN02843 isoleucyl-tRNA synthetase
Probab=62.35 E-value=6.1 Score=46.22 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.7
Q ss_pred hccccceEecccchHH
Q 014300 221 LLYQSDFVPVGEDQKQ 236 (427)
Q Consensus 221 ll~~adlvpvG~DQ~q 236 (427)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4567999999999987
No 103
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=62.16 E-value=7.3 Score=45.61 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=37.1
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
.|-+|+...|.||.. +=++|-++.-+.. .| +.|. .++. | .+|-+- +| +|||||. |
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~-H-G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFL-H-AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhc-c-ceEECC-CC-CCcccCC---C
Confidence 356899999999876 5566666655321 11 3452 2322 1 255553 56 6999997 6
Q ss_pred ceeecC
Q 014300 301 SRINLL 306 (427)
Q Consensus 301 s~I~L~ 306 (427)
|.|...
T Consensus 592 NvIdP~ 597 (995)
T PTZ00419 592 NVIDPL 597 (995)
T ss_pred CcCChH
Confidence 777543
No 104
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=62.08 E-value=7.8 Score=39.58 Aligned_cols=58 Identities=31% Similarity=0.377 Sum_probs=32.1
Q ss_pred cccceEecccchHH---HHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 223 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 223 ~~adlvpvG~DQ~q---h~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
+.+|+.+.|.||.. |..+..-++ .+|. ..|..+... ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~-----~~~~--------------~p~~~~~~h--g~~~~~-~g-~KmSKS~--- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA-----LFGK--------------APYKNVIVH--GFVLDE-DG-RKMSKSL--- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH-----hcCC--------------CccceEEEE--eeEECC-CC-CCCCCCC---
Confidence 35789999999985 333322221 1221 122333322 244333 56 6999997
Q ss_pred CceeecC
Q 014300 300 QSRINLL 306 (427)
Q Consensus 300 ~s~I~L~ 306 (427)
+|.|.+.
T Consensus 305 gn~i~~~ 311 (338)
T cd00818 305 GNYVDPQ 311 (338)
T ss_pred CCcCCHH
Confidence 6788774
No 105
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=61.82 E-value=6.7 Score=41.43 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=41.5
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEE-eccce--ecc-----CCCH-HHHHHHHHHHHHH
Q 014300 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAI 149 (427)
Q Consensus 80 ~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~I-aDlhA--~t~-----~~~~-~~l~~~~~~~~a~ 149 (427)
...+|--|=+.+||||..+.+. .++ +.+|++. |++|+++. .|.|- ++. ..++ +..+.++.....+
T Consensus 39 ~YvCGpTvY~~~HIGhart~V~--~Dv---l~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 39 MYVCGITPYDATHLGHAATYLT--FDL---VNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred EEEeCCccCCCcccccchHHHH--HHH---HHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3456777779999999876432 122 2334333 68886553 33332 111 2255 3445566677888
Q ss_pred HHHcCcc
Q 014300 150 YLACGID 156 (427)
Q Consensus 150 ~lA~GiD 156 (427)
+.++|+.
T Consensus 114 ~~~Lni~ 120 (411)
T TIGR03447 114 MEALRVL 120 (411)
T ss_pred HHHcCCC
Confidence 8888864
No 106
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=59.48 E-value=65 Score=36.42 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCceEE-EecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEE--Eeccc-eecc-----CCCH-HHHHHHHHH
Q 014300 77 VKKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLH-AITL-----PYDT-QQLSKATRE 145 (427)
Q Consensus 77 ~~~~i~-sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~--IaDlh-A~t~-----~~~~-~~l~~~~~~ 145 (427)
...++| .|.-+=+.+||||....+. .++ +.+|++. |++|.+. +.|.- .++. ..++ +....++..
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~--~DV---L~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVV--FDM---IARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHH--HHH---HHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345554 3655558899999875432 121 2344443 6887655 33322 1111 1245 344556667
Q ss_pred HHHHHHHcCccCCc
Q 014300 146 TAAIYLACGIDNSK 159 (427)
Q Consensus 146 ~~a~~lA~GiDp~k 159 (427)
+..++.++|+.+..
T Consensus 322 F~~d~~~LnI~~p~ 335 (699)
T PRK14535 322 MHEDADALGVLRPD 335 (699)
T ss_pred HHHHHHHcCCCCCc
Confidence 88888899987653
No 107
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=58.78 E-value=45 Score=31.10 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=38.6
Q ss_pred cCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccce-ec--cCCCHHHHHHHHHHHHHHHHHcCccCCceE
Q 014300 85 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKAS 161 (427)
Q Consensus 85 i~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA-~t--~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~ 161 (427)
|+| +|+||.- +++..... .-+++|.|..-.. -+ ++-+.++-.+.++. .+...|+|.+++.
T Consensus 8 F~P---~H~GHl~-~i~~a~~~----------~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~---~~~~~~~~~~rv~ 70 (181)
T cd02168 8 FQP---FHNGHLA-VVLIALEK----------AKKVIILIGSARTARNIKNPWTSEEREVMIEA---ALSDAGADLARVH 70 (181)
T ss_pred cCC---CCHHHHH-HHHHHHHH----------CCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHH---HHhccCCCcceEE
Confidence 455 8999975 34433222 1267776755422 12 22344433333332 2334699999887
Q ss_pred EEEcCCcchhhHHHHH
Q 014300 162 VFVQSHVRAHVELMWL 177 (427)
Q Consensus 162 if~QS~v~~~~eL~w~ 177 (427)
|.-=.|+. +.+..|.
T Consensus 71 i~pi~D~~-~~~~~W~ 85 (181)
T cd02168 71 FRPLRDHL-YSDNLWL 85 (181)
T ss_pred EEecCCCC-CChHHHH
Confidence 76544432 2344565
No 108
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=57.00 E-value=7.6 Score=42.17 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=32.4
Q ss_pred ceEecccchHHHHHH-HHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014300 226 DFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 226 dlvpvG~DQ~qh~eL-aRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
++...|.|+...+.+ --.+..-.+ ..++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~----------------~~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSG----------------EPLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcC----------------CCCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 488889999864432 222221111 114567655543 2443 3 56 6999997 57776
Q ss_pred cC
Q 014300 305 LL 306 (427)
Q Consensus 305 L~ 306 (427)
..
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 54
No 109
>PLN02882 aminoacyl-tRNA ligase
Probab=56.51 E-value=10 Score=45.14 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=40.9
Q ss_pred cccccchhhHHHHhhhh--ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCccc
Q 014300 205 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARV 282 (427)
Q Consensus 205 ~~~g~l~YPvLQAADIl--l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l 282 (427)
.+++.+-||- ..-+.+ .+=+|+..-|.||..-. +.+-++...- .+|. +.|..++.. ..+
T Consensus 547 ~p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~--------------~pfk~Vivh--G~v 607 (1159)
T PLN02882 547 MPYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFDK--------------PAFKNLICN--GLV 607 (1159)
T ss_pred cHHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcCC--------------CCcceeEEc--cEE
Confidence 3456666662 112211 24599999999999864 4444444322 1331 233333322 133
Q ss_pred ccCCCCCCccccCCCCCCceee
Q 014300 283 MSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 283 ~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
..= +| +|||||. +|.|.
T Consensus 608 lde-~G-~KMSKSl---GNvId 624 (1159)
T PLN02882 608 LAE-DG-KKMSKSL---KNYPD 624 (1159)
T ss_pred ECC-CC-CCcccCC---CCCCC
Confidence 221 45 7999997 56664
No 110
>PLN02660 pantoate--beta-alanine ligase
Probab=56.44 E-value=48 Score=33.45 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=47.1
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
.++|....|+-..|-+.+.|.+++.+|. |.-++.- +.+-- .||- =||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dGL-A~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADGL-AMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCCC-eecccc------
Confidence 3899999999999999999999999872 2223321 12222 2553 677653
Q ss_pred eecCCCHHHHHHHhhhccC
Q 014300 303 INLLDPKDVIANKIKRCKT 321 (427)
Q Consensus 303 I~L~Dspe~I~kKI~kA~T 321 (427)
.+|++...+....|-++.+
T Consensus 195 ~yLs~~eR~~A~~l~~~L~ 213 (284)
T PLN02660 195 VRLSAEEREKALSISRSLA 213 (284)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5777777777777766655
No 111
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=56.22 E-value=17 Score=38.82 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=57.0
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
+|+=-.=-|||.+|||-.-.|+.|.+.. .. +.+.++=|-| .-.+ ..+......+..++.=+||++
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfA--------rk~gGkFiLRiED-TDq~-----R~v~gs~e~i~~~L~w~nl~~ 99 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFA--------RKKGGKFILRIED-TDQK-----RLIRGSEEAIYEDLKWANLDW 99 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHH--------HhcCCeEEEEecc-cccc-----ccccchHHHHHHHHHhcCCCc
Confidence 4554555678999999999999998876 33 3333333433 2221 222223345566777899999
Q ss_pred CceE-------EEEcCCcchhhHHH-H-H------HhccccHHHHhhh
Q 014300 158 SKAS-------VFVQSHVRAHVELM-W-L------LSSATPIGWLNKM 190 (427)
Q Consensus 158 ~k~~-------if~QS~v~~~~eL~-w-~------L~~~t~i~~l~R~ 190 (427)
|..- =|.||+-.+...-| . + .-|+++-.+|..+
T Consensus 100 DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~l 147 (524)
T KOG1149|consen 100 DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLL 147 (524)
T ss_pred ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHH
Confidence 8754 27898743321111 1 1 2377776666543
No 112
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.70 E-value=66 Score=37.05 Aligned_cols=63 Identities=22% Similarity=0.084 Sum_probs=34.8
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhh--cCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCC
Q 014300 224 QSDFVPVGEDQKQHLELTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 224 ~adlvpvG~DQ~qh~eLaRdiA~r~n~~y--g~~~~~k~~~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
=.|+-.+|.|....+-|- -||+++. ....|+ ..+|. -|+.. .+|.+- +| .|||||. +
T Consensus 526 PVD~yigG~ehavlHLly----~rF~Hkal~d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK---g 585 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLY----FRFFHKALFDEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK---G 585 (814)
T ss_pred ChheeecchhHHHHHHHH----HHHHHHHhcccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---C
Confidence 489999999998866441 3455542 111111 11121 13333 355553 45 6999997 5
Q ss_pred ceeecC
Q 014300 301 SRINLL 306 (427)
Q Consensus 301 s~I~L~ 306 (427)
|.|.+.
T Consensus 586 N~v~p~ 591 (814)
T COG0495 586 NVVDPE 591 (814)
T ss_pred CCCCHH
Confidence 677654
No 113
>PLN02286 arginine-tRNA ligase
Probab=55.40 E-value=14 Score=40.63 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=41.1
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014300 226 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 305 (427)
Q Consensus 226 dlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 305 (427)
-+-.+|.||..|+.-...+++.++.... ..-..-+++.- .+|-++ +| +||||-. ++.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~------------~~~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE------------DTYPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc------------ccCCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4566899999999999999998763100 00001122222 366444 55 5999885 689998
Q ss_pred CCCHHH
Q 014300 306 LDPKDV 311 (427)
Q Consensus 306 ~Dspe~ 311 (427)
.|==++
T Consensus 390 ~dllde 395 (576)
T PLN02286 390 VDLLDE 395 (576)
T ss_pred HHHHHH
Confidence 764333
No 114
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.15 E-value=12 Score=41.33 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=43.8
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCceee
Q 014300 226 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 226 dlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
-+--+|.||.+|+.-.+.+++.... + .+. .++... -.++...+| .||||-. ++.|.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~--~----------------~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~vt 393 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGY--G----------------PDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVVT 393 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcC--C----------------CccceEEEEE-EeeeECCCC-ccccccC---CceEE
Confidence 3567999999999999999888662 2 221 222210 123333233 6899996 78999
Q ss_pred cCCCHHHHHHH
Q 014300 305 LLDPKDVIANK 315 (427)
Q Consensus 305 L~Dspe~I~kK 315 (427)
|.|=-+++.+|
T Consensus 394 l~dllde~~er 404 (577)
T COG0018 394 LDDLLDEAGER 404 (577)
T ss_pred HHHHHHHHHHH
Confidence 98876666643
No 115
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=52.18 E-value=22 Score=41.03 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=44.5
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CC-CHHHHHHHHHHHH
Q 014300 79 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PY-DTQQLSKATRETA 147 (427)
Q Consensus 79 ~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~-~~~~l~~~~~~~~ 147 (427)
..+++|+ -|||.+|+||.++-+.. ++ +-+|. ..|++|.+. --|-|.+-. .. ..+...+++..+.
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~--Dv---i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~ 105 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTIT--DV---LSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMK 105 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHH--HH---HHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4555552 23599999998763321 22 22332 357888655 445565521 11 3355666777888
Q ss_pred HHHHHcCccCC
Q 014300 148 AIYLACGIDNS 158 (427)
Q Consensus 148 a~~lA~GiDp~ 158 (427)
..+.++|+..+
T Consensus 106 ~~~~~lG~~~D 116 (842)
T TIGR00396 106 KQLQALGFSYD 116 (842)
T ss_pred HHHHHhCCccc
Confidence 88999997654
No 116
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=51.98 E-value=12 Score=38.07 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=38.5
Q ss_pred CceEE-EecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEE--Eeccceecc------CCCHHH-HHHHHHHH
Q 014300 78 KKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHAITL------PYDTQQ-LSKATRET 146 (427)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA~t~------~~~~~~-l~~~~~~~ 146 (427)
.+++| .|.-+-..+||||+-..+ .+ +.+.++++. +++|.+. |+|+---+. ..++.+ .+.++..+
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v----~~-D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f 82 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYV----FF-DVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEF 82 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHH----HH-HHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCCCCCcceeeee----eH-HHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34444 476666889999986433 21 223455554 6777554 777643321 124544 44556677
Q ss_pred HHHHHHcCccCC
Q 014300 147 AAIYLACGIDNS 158 (427)
Q Consensus 147 ~a~~lA~GiDp~ 158 (427)
..++.++|+.|-
T Consensus 83 ~~dm~~Lnv~~p 94 (300)
T PF01406_consen 83 FEDMKALNVLPP 94 (300)
T ss_dssp HHHHHHTT----
T ss_pred HHHHHHcCCCCC
Confidence 778888888753
No 117
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=51.68 E-value=13 Score=38.56 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-cccceE-EEEEecccee
Q 014300 87 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAI 130 (427)
Q Consensus 87 PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~ 130 (427)
|+|.+||||..+.+.. +. +.+|+ ..|++| ++.-.|-|.+
T Consensus 12 ~nG~lHiGH~~~~~~~--Dv---~~Ry~r~~G~~V~~~~G~D~hG~ 52 (382)
T cd00817 12 VTGSLHMGHALNNTIQ--DI---IARYKRMKGYNVLWPPGTDHAGI 52 (382)
T ss_pred CCCcchHHHHHHHHHH--HH---HHHHHHhcCCcccccCccCCCCC
Confidence 5799999998754321 21 22332 337777 4446677743
No 118
>PLN02563 aminoacyl-tRNA ligase
Probab=51.33 E-value=11 Score=43.96 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=21.5
Q ss_pred ccccceEecccch-HHHHHHHHHHHHHHh
Q 014300 222 LYQSDFVPVGEDQ-KQHLELTRELAERVN 249 (427)
Q Consensus 222 l~~adlvpvG~DQ-~qh~eLaRdiA~r~n 249 (427)
.+-+|+...|.|| .-|+-.+|=....+.
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 3459999999999 578777777765543
No 119
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=50.56 E-value=12 Score=40.33 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=32.5
Q ss_pred eEecccchHHHHHHHH-HHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014300 227 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 305 (427)
Q Consensus 227 lvpvG~DQ~qh~eLaR-diA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 305 (427)
+.+.|.|...++-+-- -+..- .| ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~----~~--------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMG----LG--------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHh----CC--------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999998653321 11111 12 4456665543 2443 2 45 7999997 688866
Q ss_pred CC
Q 014300 306 LD 307 (427)
Q Consensus 306 ~D 307 (427)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 44
No 120
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=50.50 E-value=41 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHH
Q 014300 333 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 377 (427)
Q Consensus 333 ~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~ 377 (427)
.|..|.+++.+++ .+.+.+|+.++|-++...++..++.-+...
T Consensus 29 tRI~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 29 TRIPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred ceecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4555666766665 789999999999999999998888766654
No 121
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=50.39 E-value=11 Score=43.32 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.9
Q ss_pred cccceEecccch-HHHHHHHHHHHH
Q 014300 223 YQSDFVPVGEDQ-KQHLELTRELAE 246 (427)
Q Consensus 223 ~~adlvpvG~DQ-~qh~eLaRdiA~ 246 (427)
+-+|+...|.|| .-|+-.+|=...
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~ 543 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHK 543 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHH
Confidence 459999999999 677777777653
No 122
>PLN02563 aminoacyl-tRNA ligase
Probab=49.69 E-value=73 Score=37.45 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=44.4
Q ss_pred ceEEEec-CCCCc-chhhhhHHHHHHHHHhccccccc-ccccceEEEE-Eeccceecc-------CCCH-HHHHHHHHHH
Q 014300 79 KRIVSGV-QPTGS-IHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRET 146 (427)
Q Consensus 79 ~~i~sGi-~PTG~-lHLGnylgaik~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~~~~ 146 (427)
..+++|+ -|+|. +|+||..+-+- .+. +-+| -..|++|++. --|-|.+-. ...+ +...+++..+
T Consensus 112 ~~v~~~~PYpnG~~lHiGH~~~y~~--~Dv---iaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~ 186 (963)
T PLN02563 112 FYVLDMFPYPSGAGLHVGHPEGYTA--TDI---LARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARF 186 (963)
T ss_pred EEEEeCCCCCCCcccchhhHHHHHH--HHH---HHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHH
Confidence 5667776 35697 99999875332 122 1122 2357887555 446666531 1122 4455677788
Q ss_pred HHHHHHcCccCC
Q 014300 147 AAIYLACGIDNS 158 (427)
Q Consensus 147 ~a~~lA~GiDp~ 158 (427)
...+..+|+.-+
T Consensus 187 ~~q~~~lG~s~D 198 (963)
T PLN02563 187 RSQLKSLGFSYD 198 (963)
T ss_pred HHHHHHhCcEee
Confidence 888889996443
No 123
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=48.62 E-value=9.8 Score=42.56 Aligned_cols=71 Identities=27% Similarity=0.274 Sum_probs=43.4
Q ss_pred hHHHHhhhhccccceEecccch-HHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014300 213 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 291 (427)
Q Consensus 213 PvLQAADIll~~adlvpvG~DQ-~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 291 (427)
...|+.|||-...||--+|.|- -||+|= +||+.-- .+|.. .+ +..++.. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHeN--EiAQseA-~~~~~-----------~~--v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHDN--ELAQSEA-YFDKH-----------QW--VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcchh--HHHHHHH-hhCCC-----------CC--CcEEEEE--EEE-Ee-cc-ch
Confidence 3589999999999999999998 477543 4444321 13421 11 1222221 132 23 45 69
Q ss_pred cccCCCCCCceeecCC
Q 014300 292 MSKSAPSDQSRINLLD 307 (427)
Q Consensus 292 MSKS~p~~~s~I~L~D 307 (427)
||||. +|.|.+.|
T Consensus 316 MSKSL---GNfItp~d 328 (651)
T PTZ00399 316 MSKSL---KNFITIRQ 328 (651)
T ss_pred hhhcC---CCcccHHH
Confidence 99997 67887753
No 124
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=45.12 E-value=15 Score=39.72 Aligned_cols=70 Identities=24% Similarity=0.107 Sum_probs=40.4
Q ss_pred hhhHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCC
Q 014300 211 TYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL 289 (427)
Q Consensus 211 ~YPvLQAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~ 289 (427)
+=..-|+...|--.-|+.-+|.|-. ||+|- ++|+..-. +|. +-+...+.. .+| .+ +|
T Consensus 220 IECsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~--------------~~~~~w~h~--g~l-~~-~g- 277 (490)
T PRK14536 220 IECSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGK--------------PWVRYWLHH--EFL-LM-NK- 277 (490)
T ss_pred HHHHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCC--------------CcceEEEEc--CEE-ee-cC-
Confidence 3344556666655679999999965 67765 45554221 231 123334333 122 23 55
Q ss_pred CccccCCCCCCceeec
Q 014300 290 SKMSKSAPSDQSRINL 305 (427)
Q Consensus 290 ~KMSKS~p~~~s~I~L 305 (427)
+|||||. +|.|.+
T Consensus 278 ~KMSKSl---GN~itl 290 (490)
T PRK14536 278 GKMSKSA---GQFLTL 290 (490)
T ss_pred ccccccC---CCcccH
Confidence 6999997 678877
No 125
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=44.10 E-value=1.2e+02 Score=24.97 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014300 364 WGTFKPLLTDALIEHLHPIQVRYEEIMSD-SAYLDKVLADGAAKAADIADATLNNVYQ 420 (427)
Q Consensus 364 ~gdlK~~Lae~I~~~L~pirer~~~~~~d-~~~l~~IL~~GaekAr~iA~~tl~~Vr~ 420 (427)
-.++...+++...+..+.+|++..+..++ .+.+.+......+++++.+..|=.-|++
T Consensus 14 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 14 LEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777766543 2344555555555666666666666654
No 126
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=43.72 E-value=24 Score=38.67 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=39.9
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCcee
Q 014300 225 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 303 (427)
Q Consensus 225 adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 303 (427)
--+-.+|.||..|+.-...+++.++.. .+. ..+-.. .+|- + +| +||||-. ++.|
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~------------------~~~~l~h~~~-g~V~-~-~g-~kmStR~---G~~v 380 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYT------------------WVDGMEHVPF-GLIL-K-DG-KKMSTRK---GRVV 380 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCC------------------cccCeEEEee-eeEe-c-CC-CCCcCCC---CCee
Confidence 346789999999999999999987631 111 111111 2342 3 45 5999996 6888
Q ss_pred ecCCCHH
Q 014300 304 NLLDPKD 310 (427)
Q Consensus 304 ~L~Dspe 310 (427)
.|.|==+
T Consensus 381 ~l~dLld 387 (562)
T PRK12451 381 LLEEVLE 387 (562)
T ss_pred EHHHHHH
Confidence 8876333
No 127
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.52 E-value=1e+02 Score=34.11 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=18.5
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014300 268 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306 (427)
Q Consensus 268 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 306 (427)
++.|..++... .+ -+ +| +|||||. ++.|+..
T Consensus 315 ~~lP~~i~ahg--~l-~~-~G-~KmSKSr---G~~V~~~ 345 (558)
T COG0143 315 LPLPTRIFAHG--FL-TL-EG-QKMSKSR---GNVVDPD 345 (558)
T ss_pred CCCCCEEEeee--eE-EE-CC-ccccccC---CcEEeHH
Confidence 44666665431 21 12 45 5999997 6778753
No 128
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=42.88 E-value=19 Score=41.35 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=18.5
Q ss_pred cccceEecccch-HHHHHHHHHHH
Q 014300 223 YQSDFVPVGEDQ-KQHLELTRELA 245 (427)
Q Consensus 223 ~~adlvpvG~DQ-~qh~eLaRdiA 245 (427)
|-+|+...|.|| .-|+-.+|=..
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~ 545 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFT 545 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH
Confidence 459999999999 67887777554
No 129
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=41.86 E-value=54 Score=35.51 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=43.5
Q ss_pred CceEEE-ecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEE--Eecc-----------ceecc-----CCCH-
Q 014300 78 KKRIVS-GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDL-----------HAITL-----PYDT- 136 (427)
Q Consensus 78 ~~~i~s-Gi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~--IaDl-----------hA~t~-----~~~~- 136 (427)
++++|+ |.-+=..+||||....+- .++ +.+|++. |++|.+. |+|+ -.++. ..++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~--~Dv---l~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~ 95 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIF--EDL---LIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVY 95 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHH--HHH---HHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHH
Confidence 455543 544447799999875432 111 2344443 7888764 6676 11221 1244
Q ss_pred HHHHHHHHHHHHHHHHcCccCC
Q 014300 137 QQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 137 ~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
+-...++..+..++.++|+.+.
T Consensus 96 e~a~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 96 EISRFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 4445566677888889998765
No 130
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=40.28 E-value=13 Score=38.22 Aligned_cols=73 Identities=27% Similarity=0.231 Sum_probs=42.5
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014300 225 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 225 adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
.-+-.+|.||..|+.-...+++.++..-. .. ...+-.. .++. +.||..|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~~-~~~H~~~-g~vl-~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPE---------------AV-KLQHVSF-GVVL-LKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------HC-TEEEEEE--EEE-ETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCC---------------CC-EEEEEEE-EEEE-cCCCCccccCCC---CCceE
Confidence 34668999999999999999999873100 01 1111111 1222 235523799996 68998
Q ss_pred cCCCHHHHHHHhhh
Q 014300 305 LLDPKDVIANKIKR 318 (427)
Q Consensus 305 L~Dspe~I~kKI~k 318 (427)
|.|==++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 86544444454444
No 131
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=39.78 E-value=33 Score=39.24 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=40.8
Q ss_pred CceEEE-ecCCCCcchhhhhHHHHHHHHHhccccccc-ccccceEEEE-Eeccceecc--------CCCH-----H----
Q 014300 78 KKRIVS-GVQPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAITL--------PYDT-----Q---- 137 (427)
Q Consensus 78 ~~~i~s-Gi~PTG~lHLGnylgaik~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~t~--------~~~~-----~---- 137 (427)
+..+.+ .--|+|.+||||.++.+.. ++ +-+| ...|++|.+. --|-|.+-. ..++ +
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~--D~---~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~ 113 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHT--DF---IARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIE 113 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHH--HH---HHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHH
Confidence 345555 3356799999998864322 21 1122 2457887554 456665421 1111 1
Q ss_pred ----HHHHHHHHHHHHHHHcCccCC
Q 014300 138 ----QLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 138 ----~l~~~~~~~~a~~lA~GiDp~ 158 (427)
-..++...+..++.++|+..|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 114 LCRELTDEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeec
Confidence 222344556677788887544
No 132
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=39.63 E-value=22 Score=39.76 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=20.1
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014300 268 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306 (427)
Q Consensus 268 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 306 (427)
++.|..++.. ..|.. +| +|||||. +|.|...
T Consensus 311 ~~lP~~v~~h--g~v~~--~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLTV--EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEEe--cC-CcccccC---CcccCHH
Confidence 5667666653 24433 56 6999997 5777654
No 133
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=36.95 E-value=1.8e+02 Score=26.40 Aligned_cols=66 Identities=24% Similarity=0.250 Sum_probs=32.4
Q ss_pred cCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEE-eccceecc--CCCHHHHHHHHHHHHH-HHHHcCccCCce
Q 014300 85 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFI-VDLHAITL--PYDTQQLSKATRETAA-IYLACGIDNSKA 160 (427)
Q Consensus 85 i~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~I-aDlhA~t~--~~~~~~l~~~~~~~~a-~~lA~GiDp~k~ 160 (427)
|+| +|+||.- +++..... .-+++|+| .+...... +.+.++- ..++. .+.-.|+|-+++
T Consensus 8 FdP---~H~GHl~-~i~~a~~~----------~d~l~v~v~s~~~~~~~~~~~~~~~R----~~mi~~~~~~~~~~~~~v 69 (163)
T cd02166 8 FQP---FHLGHLK-VIKWILEE----------VDELIIGIGSAQESHTLENPFTAGER----VLMIRRALEEEGIDLSRY 69 (163)
T ss_pred cCC---CCHHHHH-HHHHHHHH----------CCEEEEEecCCCCCCCCCCCCCHHHH----HHHHHHHHHhcCCCcCeE
Confidence 555 9999975 44433221 12355545 34444332 2233322 22333 223346777788
Q ss_pred EEEEcCCc
Q 014300 161 SVFVQSHV 168 (427)
Q Consensus 161 ~if~QS~v 168 (427)
.++-..|.
T Consensus 70 ~v~~~~d~ 77 (163)
T cd02166 70 YIIPVPDI 77 (163)
T ss_pred EEEecCCC
Confidence 88666554
No 134
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=36.01 E-value=54 Score=24.56 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHH
Q 014300 333 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 372 (427)
Q Consensus 333 ~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~La 372 (427)
.|..+..++..+ -.+.+.+||.++|..+...+++.+|+
T Consensus 17 TRI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 17 TRIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp SS-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 444555555554 57889999999999999999988875
No 135
>PLN02224 methionine-tRNA ligase
Probab=35.83 E-value=28 Score=38.80 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=35.9
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
...++..+|.|-..++-+.= -|--+. -| ++.|..++.. ..+ .+ +| +|||||. +|.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~--~g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMS--AG--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHH--CC--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688999999988654322 111111 11 5667766654 233 33 66 6999997 678
Q ss_pred eecCC
Q 014300 303 INLLD 307 (427)
Q Consensus 303 I~L~D 307 (427)
|.+.|
T Consensus 375 i~p~e 379 (616)
T PLN02224 375 LEPFE 379 (616)
T ss_pred CCHHH
Confidence 86654
No 136
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.06 E-value=49 Score=34.13 Aligned_cols=27 Identities=37% Similarity=0.710 Sum_probs=20.6
Q ss_pred CCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccc
Q 014300 88 TGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLH 128 (427)
Q Consensus 88 TG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlh 128 (427)
.|..||||| |+.+ .....|+|-|+|+-
T Consensus 62 cGD~HLgN~-ga~~-------------~~~G~V~f~i~DFD 88 (410)
T COG4320 62 CGDAHLGNF-GAAR-------------NSKGNVVFKIADFD 88 (410)
T ss_pred ecccccccc-hhhc-------------cCCCceEEEecccc
Confidence 589999998 6654 23467899999974
No 137
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=35.04 E-value=1.3e+02 Score=30.36 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=46.3
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 302 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 302 (427)
.++|....|+-..|-+.+.|.+++.+| + |.-++.- +.+-- .||- =||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~--~------------------~v~I~~~--ptvRe-~dGL-A~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF--L------------------DIEIVPV--PIVRE-EDGL-ALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC--C------------------CceEEEe--CceEC-CCCC-chhhcc------
Confidence 379999999999999999999999987 2 2223321 12222 2553 677653
Q ss_pred eecCCCHHHHHHHhhhccC
Q 014300 303 INLLDPKDVIANKIKRCKT 321 (427)
Q Consensus 303 I~L~Dspe~I~kKI~kA~T 321 (427)
.+|+....+..-.|-++.+
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5677666677666666555
No 138
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=34.99 E-value=33 Score=41.25 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=21.1
Q ss_pred ccccchhhHHHHhhhh--ccccceEecccchHHHH
Q 014300 206 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 238 (427)
Q Consensus 206 ~~g~l~YPvLQAADIl--l~~adlvpvG~DQ~qh~ 238 (427)
+.+.+-||--...+-+ .|=+|+.+=|.||..-.
T Consensus 653 p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 653 PYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred hHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 4566667742112222 35699999999998754
No 139
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.62 E-value=24 Score=37.85 Aligned_cols=72 Identities=28% Similarity=0.153 Sum_probs=45.3
Q ss_pred hhHHHHhhhhccccceEecccc-hHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCC
Q 014300 212 YPVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLS 290 (427)
Q Consensus 212 YPvLQAADIll~~adlvpvG~D-Q~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~ 290 (427)
=...|+.++|--.-||--+|.| +-||+|= |||+.-- .+|.+ .|. -.-+++. +|+= +| .
T Consensus 209 ECSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~-----------~~a-~yWmH~G---~l~i--~g-e 267 (464)
T COG0215 209 ECSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVK-----------PFA-KYWMHNG---FLNI--DG-E 267 (464)
T ss_pred HHHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCC-----------cce-eEeEEcc---eeee--cC-c
Confidence 3468899999999999999999 5689875 5555422 23421 111 1122322 3332 56 6
Q ss_pred ccccCCCCCCceeecCC
Q 014300 291 KMSKSAPSDQSRINLLD 307 (427)
Q Consensus 291 KMSKS~p~~~s~I~L~D 307 (427)
|||||. +|.|.+.|
T Consensus 268 KMSKSL---GNfiti~d 281 (464)
T COG0215 268 KMSKSL---GNFITVRD 281 (464)
T ss_pred Cccccc---CCeeEHHH
Confidence 999997 68887754
No 140
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.00 E-value=25 Score=40.65 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=21.8
Q ss_pred CCCcchhhhhHH--HHHHHHHhcccccccccccceEEEEEeccce
Q 014300 87 PTGSIHLGNYLG--AIKNWIALQPFCDLMLQNSYETLFFIVDLHA 129 (427)
Q Consensus 87 PTG~lHLGnylg--aik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA 129 (427)
+||.+|+||.+. .+.-++.. ++ -.|++++++-+=.||
T Consensus 44 VTG~LHmGHAl~~tl~D~l~Ry----kR--M~G~~vl~~pG~DhA 82 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARY----KR--MRGYNVLWPPGTDHA 82 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHH----HH--cCCCeeecCCCCCCC
Confidence 399999999762 11112222 00 237888777666665
No 141
>PHA01929 putative scaffolding protein
Probab=33.12 E-value=3e+02 Score=27.67 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=24.0
Q ss_pred CCCCCCcchHHHHHHhhCCCCHHHHHHHHh
Q 014300 331 NLERPECNNLLSIYQLISGKTKGEVAEECQ 360 (427)
Q Consensus 331 ~~~rpev~nll~i~~~~t~~~~eel~~~y~ 360 (427)
-+++|....-+.|+..|++.+--++++.|+
T Consensus 115 ~~gDp~laasv~~L~~~sg~~dlD~~RAfG 144 (306)
T PHA01929 115 LEGDPQLAPSVSYLEAFSGLDKLDTVRAFG 144 (306)
T ss_pred ccCCcccchHHHHHHHHhcCcchHHHHHHH
Confidence 347788888899999998877777887776
No 142
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=33.03 E-value=45 Score=39.18 Aligned_cols=48 Identities=25% Similarity=0.132 Sum_probs=27.5
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-ccccceEEE-EEeccceec
Q 014300 79 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLF-FIVDLHAIT 131 (427)
Q Consensus 79 ~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~-~Q~~~~~~i-~IaDlhA~t 131 (427)
+.|.+|. -|||.+|+||.++.... ++ +-+| -..|++|.+ .-.|-|.+-
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~--D~---~~Ry~rm~G~~v~~~~G~D~~Gl~ 112 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQ--DS---LIRYHRMKGDETLWVPGTDHAGIA 112 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHH--HH---HHHHHHhcCCcccCCCCCCCCchh
Confidence 4555554 35799999998864321 21 1122 134777644 466777663
No 143
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=32.40 E-value=57 Score=33.55 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=22.2
Q ss_pred EEecCCCCcchhhhhHHHH-----HHHHHhcccccccccccceE--EEEEeccc
Q 014300 82 VSGVQPTGSIHLGNYLGAI-----KNWIALQPFCDLMLQNSYET--LFFIVDLH 128 (427)
Q Consensus 82 ~sGi~PTG~lHLGnylgai-----k~~~~l~~~~~~~~Q~~~~~--~i~IaDlh 128 (427)
|+.--|||.+|+||.-.++ .++.+. .|++| ...|.||=
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~---------~G~~V~r~nyigD~G 70 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEA---------AGYDVTRENYIGDWG 70 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHH---------TTEEEEEEEEEBTTS
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHH---------cCCeeeeEEEECCCC
Confidence 8888999999999975443 223222 46765 55677774
No 144
>PLN02843 isoleucyl-tRNA synthetase
Probab=30.82 E-value=65 Score=37.87 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=42.3
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-ccccceE-EEEEeccceecc--------------CCCHHHHH
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYET-LFFIVDLHAITL--------------PYDTQQLS 140 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~-~Q~~~~~-~i~IaDlhA~t~--------------~~~~~~l~ 140 (427)
++.+..|. -++|.+|+||.++.+.+ ++ +.+| ...|+++ ++.--|-|.+-. ..++++++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lk--Di---i~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~ 107 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILK--DF---INRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLR 107 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHH--HH---HHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHH
Confidence 34444443 35799999998864322 22 2233 2347776 444556664421 11455665
Q ss_pred HHHHHHH--------HHHHHcCc--cCCc
Q 014300 141 KATRETA--------AIYLACGI--DNSK 159 (427)
Q Consensus 141 ~~~~~~~--------a~~lA~Gi--Dp~k 159 (427)
+.+++.+ ..+..+|+ |-++
T Consensus 108 ~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 108 AKAAKFAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceecCC
Confidence 5555433 45577888 6554
No 145
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=29.77 E-value=4e+02 Score=23.65 Aligned_cols=87 Identities=13% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 014300 335 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADAT 414 (427)
Q Consensus 335 pev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL~~GaekAr~iA~~t 414 (427)
.+.+|+=..++++++.++. ...+|. ...++++.+.++|...+..+.+.|...+..-..+..-+.+..++.+++ .+.
T Consensus 19 ~~~~pv~~al~~ld~ss~g-~~~~~~--~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l-K~~ 94 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVG-RAHRYQ--EFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL-KES 94 (142)
T ss_pred CCCcHHHHHHHhcCCCCcc-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3556666666667665432 222222 134778888888888888888888887777667777777777777766 677
Q ss_pred HHHHHHHcCCC
Q 014300 415 LNNVYQAMGFL 425 (427)
Q Consensus 415 l~~Vr~a~G~~ 425 (427)
|...++.+|..
T Consensus 95 L~~ak~~L~~~ 105 (142)
T PF04048_consen 95 LQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHhcC
Confidence 77887777653
No 146
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.69 E-value=92 Score=34.66 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=51.9
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCC-CHHHHHHHHHHHHHHHHHcCc
Q 014300 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGI 155 (427)
Q Consensus 80 ~i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~l~~~~~~~~a~~lA~Gi 155 (427)
.|+|-| +|-|.+||||.=-+.-+|-.. .. +.-|+ +-=|. |+|. +.++-=+.+.++++. +|+
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyA--------k~~~G~cy-LRfDD---TNPEkEee~yf~sI~e~V~W---LG~ 312 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYA--------KAHGGVCY-LRFDD---TNPEKEEEEYFESIKEMVAW---LGF 312 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhh--------hhhCCeEE-EecCC---CCcchhhHHHHHHHHHHHHH---hCC
Confidence 567777 456999999974211111111 11 22243 33333 3332 233333344444432 599
Q ss_pred cCCceEEEEcCCcc-hhhHHHHHH-------hccccHHHHhhhhhHH
Q 014300 156 DNSKASVFVQSHVR-AHVELMWLL-------SSATPIGWLNKMIQFK 194 (427)
Q Consensus 156 Dp~k~~if~QS~v~-~~~eL~w~L-------~~~t~i~~l~R~~~~k 194 (427)
+|-| |=..||+. +..+++-.| .|..+..++.+...++
T Consensus 313 ~P~k--vTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 313 EPYK--VTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred Ccee--eecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 9976 44678865 344555443 4888888887544433
No 147
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=27.66 E-value=1.1e+02 Score=25.94 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014300 380 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQA 421 (427)
Q Consensus 380 ~pirer~~~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a 421 (427)
...|+-|..+...-|..+..+++|.-.+-+.|-+++..+|..
T Consensus 53 kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~l~d~Rn~ 94 (100)
T COG3783 53 KDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKTLKDTRNT 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 457788888887777788888999999999999999999864
No 148
>PLN02610 probable methionyl-tRNA synthetase
Probab=26.61 E-value=26 Score=40.19 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=31.8
Q ss_pred eEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014300 227 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306 (427)
Q Consensus 227 lvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 306 (427)
+..+|.|-..++-+. |+.|--..+..++.|..++.. ..+. + +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~---------------wPa~L~a~g~~~~~p~~i~~~--g~l~-~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVM---------------FPSTLLGTGENWTMMKTISVT--EYLN-Y-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHH---------------HHHHHHhCCCCcCCCCEEEec--cCEe-c-CC-ceecCcC---CcccCHH
Confidence 678888887776442 111100000224567766653 2332 2 56 6999997 6777754
No 149
>PLN02943 aminoacyl-tRNA ligase
Probab=26.31 E-value=64 Score=37.89 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=28.2
Q ss_pred CceEEEe-cCCCCcchhhhhHHHHHHHHHhccccccc-ccccceEEEE-Eeccceec
Q 014300 78 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAIT 131 (427)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnylgaik~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~t 131 (427)
++.+..| =-+||.+|+||.+.-. +.++ +-+| -..|++|.+. -.|-|.+-
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~--~~D~---~~Ry~rm~G~~vl~~~G~D~~Gl~ 140 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVT--LEDI---MVRYNRMKGRPTLWIPGTDHAGIA 140 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHH--HHHH---HHHHHHhcCCeeecCCCCCcccch
Confidence 3555555 5679999999987432 1121 2122 1347887544 56666663
No 150
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=25.59 E-value=2.4e+02 Score=24.61 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=45.4
Q ss_pred ecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceecc-CCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014300 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 162 (427)
Q Consensus 84 Gi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~lA~GiDp~k~~i 162 (427)
-+.=||++..-|.+-+ | .+|.+-++++++-..==. .......+++.......+...|++|+++.+
T Consensus 33 rvpC~Grv~~~~il~A------f--------~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~ 98 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRA------F--------EKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRL 98 (124)
T ss_pred EccCCCccCHHHHHHH------H--------HcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEE
Confidence 3444688888776532 3 567787776665421100 113356666777777788899999999999
Q ss_pred EEcCC
Q 014300 163 FVQSH 167 (427)
Q Consensus 163 f~QS~ 167 (427)
++=|-
T Consensus 99 ~~~~~ 103 (124)
T PF02662_consen 99 YWISA 103 (124)
T ss_pred EEeCc
Confidence 77554
No 151
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=25.52 E-value=43 Score=36.25 Aligned_cols=65 Identities=23% Similarity=0.163 Sum_probs=36.8
Q ss_pred HHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014300 216 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 294 (427)
Q Consensus 216 QAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 294 (427)
|+...|--.-|+.-+|.|-. ||+|- ++|...-. .|. +.+...+.. .+| -+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHen--e~Aqs~a~-~g~--------------~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHIN--EIAIAECY-LNK--------------KWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchh--HHHHHhhh-cCC--------------CcceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444569999999976 57765 44443221 231 223333332 133 23 45 69999
Q ss_pred CCCCCCceeec
Q 014300 295 SAPSDQSRINL 305 (427)
Q Consensus 295 S~p~~~s~I~L 305 (427)
|. +|.|.+
T Consensus 283 Sl---GN~i~l 290 (481)
T PRK14534 283 SN---NNFITI 290 (481)
T ss_pred cC---CCcccH
Confidence 97 678877
No 152
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=25.42 E-value=64 Score=35.39 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=17.3
Q ss_pred eEEEecCCCCcchhhhhHHHH
Q 014300 80 RIVSGVQPTGSIHLGNYLGAI 100 (427)
Q Consensus 80 ~i~sGi~PTG~lHLGnylgai 100 (427)
.-|++--|+|.+|+||.-+++
T Consensus 116 ve~~spn~~~~~hiGh~r~~~ 136 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAI 136 (566)
T ss_pred EEecCCCCCCCCchhhhHHHH
Confidence 348899999999999986654
No 153
>PRK10404 hypothetical protein; Provisional
Probab=25.37 E-value=3.6e+02 Score=22.90 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014300 365 GTFKPLLTDALIEHLHPIQVRYEEIMSDSA-YLDKVLADGAAKAADIADATLNNVYQ 420 (427)
Q Consensus 365 gdlK~~Lae~I~~~L~pirer~~~~~~d~~-~l~~IL~~GaekAr~iA~~tl~~Vr~ 420 (427)
.++.+..++.-.+..+.+|+|.+..+++-. .+.+.-....+++++.++.|=+-|++
T Consensus 22 e~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 22 EEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555566666677777666654432 45555555666778888887777765
No 154
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=24.91 E-value=42 Score=38.71 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=26.6
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-ccccceEEEE-Eecccee
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAI 130 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~ 130 (427)
++.|++|. -+||.+|+||.++.... ++ +-+| -..|++|.+. -.|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~--D~---~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQ--DI---IARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHH--HH---HHHHHHhcCCcccCCCCcCcCCC
Confidence 35555544 35799999998753221 21 1112 1247777554 5566655
No 155
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=24.68 E-value=1.6e+02 Score=29.93 Aligned_cols=68 Identities=26% Similarity=0.152 Sum_probs=37.9
Q ss_pred hHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014300 213 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 291 (427)
Q Consensus 213 PvLQAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 291 (427)
..-|+...|-..-|+--+|.|-. ||+|=-+..++-.+ |+. |. ..-+++. .|.- +| +|
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~------------~a-~~W~H~g---~l~~--~g-~K 252 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKP------------FA-NYWMHNG---HLNV--DG-EK 252 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-------------SE-EEEEEE-----EEE--TT-CE
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---Cch------------HH-HHHHHHH---HHhh--cC-cc
Confidence 45778888888899999999975 78876555555432 321 10 1122222 3332 45 69
Q ss_pred cccCCCCCCceeec
Q 014300 292 MSKSAPSDQSRINL 305 (427)
Q Consensus 292 MSKS~p~~~s~I~L 305 (427)
||||. +|.|.+
T Consensus 253 MSKSl---gN~~~i 263 (300)
T PF01406_consen 253 MSKSL---GNFITI 263 (300)
T ss_dssp --TTT---T---BH
T ss_pred ccccC---CCEEEH
Confidence 99997 577776
No 156
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=24.24 E-value=3.1e+02 Score=31.23 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=25.9
Q ss_pred chhhHHHHhhhhccccceEecccchH-HHHHHHHHHHHH
Q 014300 210 LTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAER 247 (427)
Q Consensus 210 l~YPvLQAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r 247 (427)
-+=..-|+...|--.-|+.-+|.|-. ||+|= ++|+.
T Consensus 432 HIECSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 432 HIECSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 33346677777777789999999964 78865 55554
No 157
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.19 E-value=27 Score=40.33 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=11.1
Q ss_pred CCCCccccCCCCCCceeec
Q 014300 287 DGLSKMSKSAPSDQSRINL 305 (427)
Q Consensus 287 dg~~KMSKS~p~~~s~I~L 305 (427)
+| .|||||. ||.|..
T Consensus 522 ~G-~KMSKS~---GNvIDP 536 (877)
T COG0525 522 QG-RKMSKSK---GNVIDP 536 (877)
T ss_pred CC-CCCcccC---CCcCCH
Confidence 45 7999997 577644
No 158
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.18 E-value=26 Score=36.69 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=17.0
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014300 268 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 305 (427)
Q Consensus 268 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 305 (427)
++.|..++.. ..+. + +| +|||||. ++.|..
T Consensus 309 ~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 309 LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 5677766644 2333 3 56 6999997 578865
No 159
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.11 E-value=1.2e+02 Score=34.91 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHH
Q 014300 369 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 404 (427)
Q Consensus 369 ~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL~~Ga 404 (427)
+.++..++..++--++.|+.- ...++|+.|-
T Consensus 789 rvf~nemN~~i~~t~~aye~~-----~fk~aLK~Gf 819 (1080)
T KOG0437|consen 789 RVFENEMNALIAKTERAYEDT-----LFKDALKYGF 819 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----HHHHHHHhhh
Confidence 455566666666666666543 2466666653
No 160
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=21.64 E-value=3.4e+02 Score=24.29 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014300 365 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 417 (427)
Q Consensus 365 gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL~~GaekAr~iA~~tl~~ 417 (427)
..+|..+=++|.+.+.|.=. -..+.+...+++.+-....+++|+++|++
T Consensus 19 Q~lKl~VRD~Vl~~l~~~~~----~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPWLS----QAKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 47999999999999988633 23566777888888888888899888864
No 161
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=21.64 E-value=2.9e+02 Score=29.33 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=40.8
Q ss_pred hHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014300 213 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 291 (427)
Q Consensus 213 PvLQAADIll~~adlvpvG~DQ~-qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 291 (427)
..-|+..+|--.-|+.-+|.|-. +|+|- +||+..- .+|+. +-+...+.. -.... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~-------------~~~~~w~H~---g~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVR-------------RMARHYVHA---GMIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCC-------------CcceEEEEC---CEECc-CC-CC
Confidence 45677777777789999999965 56654 4444322 13321 112333332 22233 56 79
Q ss_pred cccCCCCCCceeec
Q 014300 292 MSKSAPSDQSRINL 305 (427)
Q Consensus 292 MSKS~p~~~s~I~L 305 (427)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99997 577776
No 162
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=2.4e+02 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 014300 402 DGAAKAADIADATLNNVYQAMG 423 (427)
Q Consensus 402 ~GaekAr~iA~~tl~~Vr~a~G 423 (427)
+-++++|+.|+.-|+++|+.||
T Consensus 37 ~e~~~lR~r~~~~Lk~~r~rl~ 58 (104)
T COG4575 37 DEAEELRSKAESALKEARDRLG 58 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777766665
No 163
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=20.32 E-value=4.5e+02 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=16.1
Q ss_pred cchhhhhHHHHHHHHHhcccccccccccc-eEEEEEeccceec
Q 014300 90 SIHLGNYLGAIKNWIALQPFCDLMLQNSY-ETLFFIVDLHAIT 131 (427)
Q Consensus 90 ~lHLGnylgaik~~~~l~~~~~~~~Q~~~-~~~i~IaDlhA~t 131 (427)
.+|.||.- +++...++ -.. .++++.+|-+..-
T Consensus 8 P~H~GH~~-~l~~a~~~---------~~~~~vi~v~~~~~~~k 40 (157)
T PF01467_consen 8 PPHNGHLN-LLREAREL---------FDEDLVIVVPSDNSPHK 40 (157)
T ss_dssp T--HHHHH-HHHHHHHH---------SSESEEEEEEEEHHCHS
T ss_pred cccHHHHH-HHHHHHHh---------ccccccccccccccccc
Confidence 49999975 45544433 122 2555666665543
No 164
>PF15605 Toxin_52: Putative toxin 52
Probab=20.30 E-value=1.3e+02 Score=25.74 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=23.2
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014300 390 MSDSAYLDKVLADGAAKAADIADATLNNVYQAM 422 (427)
Q Consensus 390 ~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~ 422 (427)
+.|| -+.+..++-.+++...|..+|++|.+.+
T Consensus 70 L~np-~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 70 LKNP-NLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred cCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5565 3455566667788888899999998765
Done!