Query 014300
Match_columns 427
No_of_seqs 178 out of 1328
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 3.7E-96 1E-100 748.6 34.7 325 79-426 36-360 (388)
2 3n9i_A Tryptophanyl-tRNA synth 100.0 6E-96 2E-100 738.1 34.2 328 78-426 15-344 (346)
3 3sz3_A Tryptophanyl-tRNA synth 100.0 3.3E-96 1E-100 739.3 30.1 331 78-426 6-339 (341)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 7.1E-91 2.4E-95 698.2 34.3 325 79-426 2-326 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 5.7E-91 1.9E-95 703.9 28.6 326 78-425 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 2E-89 6.8E-94 686.1 32.2 317 78-424 3-322 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 7.1E-87 2.4E-91 671.5 32.9 320 79-425 2-328 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 2.6E-86 8.8E-91 670.6 35.3 326 75-426 19-350 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 2E-86 6.9E-91 668.8 30.6 320 77-425 11-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 4E-72 1.4E-76 572.9 22.1 287 76-406 71-371 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 5.6E-70 1.9E-74 554.8 19.8 282 76-400 68-367 (372)
12 3vgj_A Tyrosyl-tRNA synthetase 100.0 5.8E-67 2E-71 532.7 26.5 279 77-399 55-366 (373)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.2E-67 4E-72 538.5 19.7 275 77-390 32-362 (375)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 4.4E-67 1.5E-71 529.5 21.8 268 77-389 39-331 (348)
15 2cya_A Tyrosyl-tRNA synthetase 100.0 1.5E-66 5.2E-71 528.4 22.3 269 77-389 34-348 (364)
16 2ip1_A Tryptophanyl-tRNA synth 100.0 1.3E-67 4.5E-72 546.0 9.5 302 77-419 101-432 (432)
17 3tze_A Tryptophanyl-tRNA synth 100.0 1E-65 3.5E-70 527.4 21.2 275 76-392 99-395 (406)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 9.1E-65 3.1E-69 550.2 26.2 291 77-401 39-360 (690)
19 3hzr_A Tryptophanyl-tRNA synth 100.0 3.2E-65 1.1E-69 521.1 21.1 280 76-399 80-380 (386)
20 3hv0_A Tryptophanyl-tRNA synth 100.0 8.9E-64 3E-68 511.7 19.8 282 77-401 73-379 (393)
21 3foc_A Tryptophanyl-tRNA synth 100.0 1.8E-63 6E-68 515.4 19.6 280 77-399 90-444 (451)
22 3i05_A Tryptophanyl-tRNA synth 100.0 4.5E-64 1.5E-68 514.2 14.6 288 76-407 76-392 (395)
23 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.3E-62 4.4E-67 492.4 23.8 264 77-388 31-321 (323)
24 2zp1_A Tyrosyl-tRNA synthetase 100.0 3E-61 1E-65 480.9 22.9 257 77-388 27-308 (314)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 1.9E-61 6.6E-66 499.9 15.9 281 76-400 106-414 (437)
26 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.7E-60 6E-65 488.6 22.1 279 77-404 38-355 (394)
27 1n3l_A Tyrosyl-tRNA synthetase 100.0 2.2E-60 7.6E-65 484.5 21.8 265 77-387 34-329 (372)
28 1r6t_A Tryptophanyl-tRNA synth 100.0 1E-60 3.4E-65 500.0 17.0 280 77-400 154-461 (477)
29 1h3f_A Tyrosyl-tRNA synthetase 100.0 3.9E-60 1.3E-64 490.2 18.5 287 76-418 35-345 (432)
30 2yxn_A Tyrosyl-tRNA synthetase 100.0 7.4E-59 2.5E-63 465.1 17.9 262 77-387 32-319 (322)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 6.4E-56 2.2E-60 449.1 16.7 260 77-387 45-338 (356)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 3.3E-55 1.1E-59 452.7 19.1 261 77-387 31-316 (432)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 1.2E-53 4.1E-58 437.1 19.8 274 77-388 63-378 (392)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.3E-53 4.6E-58 439.7 15.6 261 77-389 29-316 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 7.3E-53 2.5E-57 434.9 20.4 258 77-387 31-315 (420)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.5E-48 5E-53 423.4 25.2 265 70-387 374-669 (690)
37 2ja2_A Glutamyl-tRNA synthetas 99.1 5.2E-10 1.8E-14 117.5 12.9 198 85-318 13-286 (498)
38 1nzj_A Hypothetical protein YA 99.1 8.8E-11 3E-15 116.1 5.8 176 84-297 11-234 (298)
39 1j09_A Glutamyl-tRNA synthetas 98.9 8.6E-10 3E-14 115.2 5.5 193 86-318 9-272 (468)
40 3afh_A Glutamyl-tRNA synthetas 98.9 7.5E-10 2.6E-14 116.1 4.7 201 79-319 26-285 (488)
41 2cfo_A Glutamyl-tRNA synthetas 98.7 6.4E-07 2.2E-11 94.1 18.8 194 84-318 7-276 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.7 1.1E-09 3.6E-14 117.5 -2.7 200 79-318 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 98.1 2.4E-05 8.2E-10 81.9 14.2 200 79-318 14-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.9 0.00021 7.1E-09 74.9 16.1 97 78-189 25-130 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.7 0.00014 4.9E-09 77.0 10.6 177 81-296 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 97.1 0.0019 6.6E-08 68.0 10.8 178 84-297 30-279 (512)
47 2csx_A Methionyl-tRNA syntheta 97.1 0.0032 1.1E-07 65.5 12.1 83 78-167 5-99 (497)
48 4dlp_A Aminoacyl-tRNA syntheta 97.1 0.0032 1.1E-07 66.3 12.1 83 78-167 25-119 (536)
49 2d5b_A Methionyl-tRNA syntheta 96.9 0.0026 9E-08 66.1 9.9 82 79-167 4-97 (500)
50 1iq0_A Arginyl-tRNA synthetase 96.2 0.0033 1.1E-07 67.2 4.7 44 79-127 106-152 (592)
51 1li5_A Cysrs, cysteinyl-tRNA s 95.5 0.039 1.3E-06 57.2 9.2 81 81-167 26-116 (461)
52 1irx_A Lysyl-tRNA synthetase; 94.5 0.036 1.2E-06 58.2 5.5 81 79-167 22-129 (523)
53 1qtq_A GLNRS, protein (glutami 94.1 0.079 2.7E-06 56.2 7.1 96 79-188 27-130 (553)
54 2zue_A Arginyl-tRNA synthetase 94.0 0.034 1.2E-06 59.9 4.3 41 82-127 125-168 (629)
55 3tqo_A Cysteinyl-tRNA syntheta 93.8 0.17 5.8E-06 52.6 8.9 75 80-159 28-112 (462)
56 2hz7_A Glutaminyl-tRNA synthet 93.5 0.11 3.9E-06 57.5 7.3 92 83-188 71-170 (851)
57 3h99_A Methionyl-tRNA syntheta 89.5 0.89 3E-05 47.8 8.7 81 79-166 20-111 (560)
58 3u1f_A Methionyl-tRNA syntheta 88.4 1.3 4.3E-05 46.3 8.8 89 77-173 9-108 (542)
59 3kfl_A Methionyl-tRNA syntheta 85.1 2.9 9.8E-05 44.1 9.4 81 80-167 28-120 (564)
60 3kfl_A Methionyl-tRNA syntheta 82.7 0.42 1.4E-05 50.5 1.8 56 223-306 293-351 (564)
61 2x1l_A Methionyl-tRNA syntheta 82.3 0.43 1.5E-05 49.7 1.6 75 86-167 22-106 (524)
62 1rqg_A Methionyl-tRNA syntheta 82.3 4.2 0.00014 44.2 9.5 76 78-159 3-91 (722)
63 1wkb_A Leucyl-tRNA synthetase; 81.3 0.72 2.4E-05 50.8 3.0 61 223-307 602-663 (810)
64 3u1f_A Methionyl-tRNA syntheta 80.2 0.67 2.3E-05 48.4 2.2 54 224-305 278-334 (542)
65 3fnr_A Arginyl-tRNA synthetase 79.0 0.41 1.4E-05 49.6 0.2 75 208-307 215-298 (464)
66 1wz2_A Leucyl-tRNA synthetase; 78.4 0.97 3.3E-05 50.9 2.9 60 223-306 602-662 (967)
67 3c8z_A Cysteinyl-tRNA syntheta 76.2 1.1 3.6E-05 45.6 2.2 81 80-167 42-133 (414)
68 1gax_A Valrs, valyl-tRNA synth 75.0 1 3.5E-05 50.2 1.8 60 223-306 480-540 (862)
69 1ffy_A Isoleucyl-tRNA syntheta 74.0 1.6 5.6E-05 48.9 3.2 58 222-306 546-607 (917)
70 1ile_A Ilers, isoleucyl-tRNA s 72.9 1.8 6.2E-05 47.8 3.2 14 223-236 543-556 (821)
71 2x1l_A Methionyl-tRNA syntheta 71.4 7.5 0.00026 40.2 7.3 15 223-237 264-278 (524)
72 3h99_A Methionyl-tRNA syntheta 71.2 1.6 5.4E-05 45.9 2.1 31 268-306 327-357 (560)
73 3c8z_A Cysteinyl-tRNA syntheta 68.0 15 0.00051 37.0 8.5 31 216-246 236-267 (414)
74 3sp1_A Cysteinyl-tRNA syntheta 65.2 18 0.00061 37.8 8.6 77 78-159 42-139 (501)
75 4arc_A Leucine--tRNA ligase; l 61.1 17 0.0006 40.4 8.0 76 78-158 54-140 (880)
76 2v0c_A Aminoacyl-tRNA syntheta 58.1 5.5 0.00019 44.4 3.4 25 223-247 530-555 (878)
77 3sp1_A Cysteinyl-tRNA syntheta 53.7 6.1 0.00021 41.3 2.6 30 215-244 244-274 (501)
78 1irx_A Lysyl-tRNA synthetase; 53.4 3.8 0.00013 42.7 1.0 70 224-318 230-308 (523)
79 4arc_A Leucine--tRNA ligase; l 52.9 10 0.00034 42.4 4.4 26 223-248 542-568 (880)
80 1gax_A Valrs, valyl-tRNA synth 48.1 23 0.00078 39.4 6.3 48 78-130 35-85 (862)
81 3foc_A Tryptophanyl-tRNA synth 45.7 4.5 0.00016 41.7 0.1 15 226-240 235-249 (451)
82 1f7u_A Arginyl-tRNA synthetase 37.4 22 0.00074 37.9 3.8 39 208-249 343-390 (607)
83 2v0c_A Aminoacyl-tRNA syntheta 36.3 29 0.001 38.6 4.7 76 78-158 34-120 (878)
84 1wkb_A Leucyl-tRNA synthetase; 35.7 26 0.00088 38.4 4.2 47 79-130 36-85 (810)
85 1ile_A Ilers, isoleucyl-tRNA s 32.3 18 0.00063 39.7 2.3 48 78-130 39-89 (821)
86 1rqg_A Methionyl-tRNA syntheta 29.5 10 0.00035 41.2 -0.3 44 268-319 326-374 (722)
87 3fnr_A Arginyl-tRNA synthetase 27.4 29 0.00098 35.7 2.6 42 82-128 36-80 (464)
88 1f7u_A Arginyl-tRNA synthetase 25.3 25 0.00087 37.4 1.8 41 82-127 149-192 (607)
89 2ga1_A Protein of unknown func 22.5 84 0.0029 25.8 4.1 40 333-374 50-89 (106)
90 3oqi_A YVMC, putative uncharac 22.2 2.3E+02 0.008 26.8 7.6 83 78-172 29-124 (257)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=3.7e-96 Score=748.63 Aligned_cols=325 Identities=47% Similarity=0.761 Sum_probs=305.3
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
.+|||||+|||.+|||||+|+|++|++| |++++|+|+||||||+|++.+++++++++++++++|+||||||+
T Consensus 36 ~ri~sG~~PTG~lHLGhyvGal~~~~~L--------Q~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~ 107 (388)
T 3prh_A 36 QTIFSGIQPSGSVTLGNYIGAMKQFVEL--------QHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPE 107 (388)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHT--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CeEEEeeCCCCcchHHHHHHHHHHHHHH--------HccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 4699999999999999999999999999 99999999999999999989999999999999999999999999
Q ss_pred ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHH
Q 014300 159 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 238 (427)
Q Consensus 159 k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~ 238 (427)
|++||+||+|++|+||+|+|+|.++++||+|+++||++.+.. +++++|+|+||+|||||||+|++|+||||.||+||+
T Consensus 108 kt~if~qS~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hl 185 (388)
T 3prh_A 108 KATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHL 185 (388)
T ss_dssp TEEEEEGGGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHH
T ss_pred HeEEEecccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 999999999999999999999999999999999999876553 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 014300 239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318 (427)
Q Consensus 239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k 318 (427)
|||||||+|||+.|| .+|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+
T Consensus 186 eltRdia~rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k 253 (388)
T 3prh_A 186 ELTRNLAERFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS 253 (388)
T ss_dssp HHHHHHHHHHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh
Confidence 999999999999998 56999999998766899999888899999999888999999999999999999
Q ss_pred ccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHH
Q 014300 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 398 (427)
Q Consensus 319 A~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~ 398 (427)
|+||+.+.++++++++|+++|+|.||+++++++++|++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|++
T Consensus 254 a~TD~~~~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~ 332 (388)
T 3prh_A 254 AVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDR 332 (388)
T ss_dssp CCCCSSCCCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHH
T ss_pred ccCCCCCcccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHH
Confidence 999999889999999999999999999999999999999998779999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 399 VLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 399 IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
||++|++|||++|++||++||++|||.+
T Consensus 333 il~~Ga~kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 333 ILDEGAERANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999964
No 2
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=6e-96 Score=738.11 Aligned_cols=328 Identities=47% Similarity=0.764 Sum_probs=314.0
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
+++||||++|||.+|||||+|+|++|++| |++++++|+||||||+|++.+++.+++++++++++|+||||||
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~~~~~l--------Q~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp 86 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALRQWVQM--------QDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDP 86 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHHHHHTT--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCEEEECcCCCCcccHHHHHHHHHHHHHH--------HhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 57999999999999999999999999999 8999999999999999998999999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHH
Q 014300 158 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 237 (427)
Q Consensus 158 ~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh 237 (427)
+|++||+||+|++|.+++|+|+|.+++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 87 ~k~~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~h 165 (346)
T 3n9i_A 87 KKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQH 165 (346)
T ss_dssp TTSEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHH
T ss_pred cceEEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHH
Confidence 99999999999999999999999999999999999999876653 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014300 238 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317 (427)
Q Consensus 238 ~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 317 (427)
+|||||||+|||+.|| .+|++|++++++++++||||+||++|||||+|+++|+|+|+|+|++|++|||
T Consensus 166 leltRdia~rfn~~yg------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~ 233 (346)
T 3n9i_A 166 LELSRDIASRFNNLYG------------DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIK 233 (346)
T ss_dssp HHHHHHHHHHHHHHHS------------SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccC------------CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHH
Confidence 9999999999999998 5689999999876689999988988999999877799999999999999999
Q ss_pred hccCCCCC--CcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHH
Q 014300 318 RCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 395 (427)
Q Consensus 318 kA~Td~~~--~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~ 395 (427)
+|+||+.+ .+.++++++|+++|++.||..+++++++|++++|++.++++||+.|+++|+++|+|||+||+++++|+++
T Consensus 234 kA~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~ 313 (346)
T 3n9i_A 234 RAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEAL 313 (346)
T ss_dssp TCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hCcCCCCCCccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999986 4667889999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 396 LDKVLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 396 l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
|++||++|++|||++|++||++||++|||.+
T Consensus 314 l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 314 LQDVMREGAAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999974
No 3
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.3e-96 Score=739.34 Aligned_cols=331 Identities=44% Similarity=0.737 Sum_probs=314.5
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
+++||||++|||.+|||||+|+|++|++| |++++++|+||||||+|++.+++++++++++++++|+||||||
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~l--------Q~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp 77 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQM--------QDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDP 77 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHH--------HHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHH--------HhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 46999999999999999999999999999 8999999999999999998899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHH
Q 014300 158 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 237 (427)
Q Consensus 158 ~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh 237 (427)
+|++||+||+|++|++|+|+|+|.+++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 78 ~k~~i~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~h 156 (341)
T 3sz3_A 78 KKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQH 156 (341)
T ss_dssp TTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHH
T ss_pred hhcEEEeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHH
Confidence 99999999999999999999999999999999999999887764 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014300 238 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317 (427)
Q Consensus 238 ~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 317 (427)
+|||||||+|||+.||.. ..+|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||
T Consensus 157 lel~Rdia~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~ 227 (341)
T 3sz3_A 157 LELARDIATRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKIN 227 (341)
T ss_dssp HHHHHHHHHHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhh
Confidence 999999999999999831 13689999999865589999988888999999977899999999999999999
Q ss_pred hccCCCCC--CcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhc-CChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHH
Q 014300 318 RCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 394 (427)
Q Consensus 318 kA~Td~~~--~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~-l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~ 394 (427)
+|+||+.+ .+.++++++|+++|+|.||.+|+++++++++++|.+ ++|++||+.|++.|+++|+|||+||+++++|++
T Consensus 228 ~a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~ 307 (341)
T 3sz3_A 228 KAQTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDRE 307 (341)
T ss_dssp TCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hccCCCCCCcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999987 566888999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 395 YLDKVLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 395 ~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
||++||++|++|||++|++||++||++|||.+
T Consensus 308 ~l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 308 YLNSVMRDGAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999975
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=7.1e-91 Score=698.24 Aligned_cols=325 Identities=48% Similarity=0.773 Sum_probs=309.7
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
++|||||+|||.+|||||+|+|++|+++ |++++++|+||||||+|++.+++++++++++++++|+|+|+||+
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~l--------Q~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVEL--------QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHH--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHH--------HcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 5899999999999999999999999999 89999999999999999988999999999999999999999999
Q ss_pred ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHH
Q 014300 159 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 238 (427)
Q Consensus 159 k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~ 238 (427)
|++||+||+|++|.+++|+++|.+++++|+||++||++..+ + +++++|+|+||+||||||++|++|+||||.||+||+
T Consensus 74 k~~if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~i 151 (328)
T 1i6k_A 74 QATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHI 151 (328)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHH
T ss_pred hcEEEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHH
Confidence 99999999999999999999999999999999999987654 2 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 014300 239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318 (427)
Q Consensus 239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k 318 (427)
|++||||+|||+.|| .+|++|+++++++.++||||+||++|||||+++..|+|+|+|+|++|++|||+
T Consensus 152 el~Rdia~r~n~~yg------------~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~ 219 (328)
T 1i6k_A 152 ELTRDLAERFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219 (328)
T ss_dssp HHHHHHHHHHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccc------------cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh
Confidence 999999999999998 67999999998666899999776789999997423349999999999999999
Q ss_pred ccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHH
Q 014300 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 398 (427)
Q Consensus 319 A~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~ 398 (427)
|+||+.+++.|++.++|+++|+|.||.+++++++++++++|.++++++||+.||+.|+++|+|||+||+++++|++ |++
T Consensus 220 a~td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~ 298 (328)
T 1i6k_A 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDR 298 (328)
T ss_dssp CCCCSSCCCCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHH
T ss_pred cCCCCccccccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHH
Confidence 9999999899999889999999999999999999999999998999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 399 VLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 399 IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
||++|++|||++|++||++||++|||.+
T Consensus 299 il~~g~~~a~~~a~~~~~~v~~~~g~~~ 326 (328)
T 1i6k_A 299 VLDEGAEKANRVASEMVRKMEQAMGLGR 326 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999964
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=5.7e-91 Score=703.86 Aligned_cols=326 Identities=36% Similarity=0.561 Sum_probs=307.7
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
+++|||||+|||.+|||||+|+|++|+++ |++++++|+||||||+|++.+++++++++++++++|+|+||||
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~l--------Q~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp 75 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIEL--------QEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDP 75 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHH--------HHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHH--------HhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCCh
Confidence 57999999999999999999999999999 8899999999999999998999999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-----CCCcccccchhhHHHHhhhhccccceEeccc
Q 014300 158 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGE 232 (427)
Q Consensus 158 ~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-----~~~~~~g~l~YPvLQAADIll~~adlvpvG~ 232 (427)
+|++||+||+|++|++++|+|+|.+++++|+|+++||++..+.+ .+++++|+|+||+|||||||+|++|+||||.
T Consensus 76 ~k~~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~ 155 (348)
T 2yy5_A 76 QKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGN 155 (348)
T ss_dssp TTEEEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCG
T ss_pred hHeEEEECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecc
Confidence 99999999999999999999999999999999999998765432 3578999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 014300 233 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312 (427)
Q Consensus 233 DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I 312 (427)
||+||+||+||||+|||+.|| ++|++|++++++..++||||+||++|||||+++++|+|+|+|+|++|
T Consensus 156 DQ~~~lel~Rdia~r~n~~yg------------~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i 223 (348)
T 2yy5_A 156 DQKQHLELTRDLAQRIQKKFK------------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVV 223 (348)
T ss_dssp GGHHHHHHHHHHHHHHHHHHC------------CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhcc------------cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHH
Confidence 999999999999999999998 67999999998656899999877789999998645599999999999
Q ss_pred HHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHH---------HHHHHHhcCChhhHHHHHHHHHHHhhhHHH
Q 014300 313 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQ 383 (427)
Q Consensus 313 ~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~e---------el~~~y~~l~~gdlK~~Lae~I~~~L~pir 383 (427)
++|||+|+||+.+++.+++.++|+++|+|.||.+|++++++ +++++|.+++|++||+.||++|+++|+|||
T Consensus 224 ~~KI~~a~td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pir 303 (348)
T 2yy5_A 224 VKKIRQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQ 303 (348)
T ss_dssp HHHHHTCCCCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988999998899999999999999999999 999999989999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014300 384 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425 (427)
Q Consensus 384 er~~~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~ 425 (427)
+||+++ +|++ |++||++|++|||++|++||++||++|||.
T Consensus 304 e~~~~~-~d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 304 RKREQI-SREQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHHHSS-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHh-cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999 8988 999999999999999999999999999985
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=2e-89 Score=686.07 Aligned_cols=317 Identities=34% Similarity=0.597 Sum_probs=298.6
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccC
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 157 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp 157 (427)
..++||||+|||.+|||||+|+|++|++| |++++++|+||||||+|++.+++++++++++++++|+|||+||
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~l--------Q~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp 74 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDA--------QEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDP 74 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHT--------TTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHH--------hcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 35899999999999999999999999999 8899999999999999998899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHH
Q 014300 158 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 237 (427)
Q Consensus 158 ~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh 237 (427)
+|++||+||+|++|.+++|+++|.+++++|+|+++||++.... +++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 75 ~k~~i~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~h 152 (322)
T 3tzl_A 75 QKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQH 152 (322)
T ss_dssp TTSEEEEGGGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHH
T ss_pred cceEEEECCcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHH
Confidence 9999999999999999999999999999999999999876543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014300 238 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 317 (427)
Q Consensus 238 ~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 317 (427)
+|++||+|+|||++|| ++|++|++++....++|||| +| +|||||++ |+|+|+|+|++|++|||
T Consensus 153 i~l~Rdia~r~n~~~g------------~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~ 215 (322)
T 3tzl_A 153 VEIARDIALKVNNEWG------------EIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQIS 215 (322)
T ss_dssp HHHHHHHHHHHHHHHC------------SCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc------------CCCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHH
Confidence 9999999999999998 57999999997555899999 56 79999986 68999999999999999
Q ss_pred hccCCCCCCcccCCCCCCCcchHHHHHHhhC-CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHH
Q 014300 318 RCKTDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 394 (427)
Q Consensus 318 kA~Td~~~~~~~~~~~rpev~nll~i~~~~t-~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~ 394 (427)
+|+||+.+. + .+++|+++++++|+++|+ ++++++++++|. ++++++||+.||+.|+++|+|||+||+++++|++
T Consensus 216 ~a~td~~~~--~-~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~ 292 (322)
T 3tzl_A 216 SIVTDSTAL--E-DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPS 292 (322)
T ss_dssp TCCCCCCCT--T-SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHH
T ss_pred hccCCCccc--c-CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHH
Confidence 999999875 2 357899999999999995 457899999997 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014300 395 YLDKVLADGAAKAADIADATLNNVYQAMGF 424 (427)
Q Consensus 395 ~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~ 424 (427)
+|++||++|++|||++|++||++||++|||
T Consensus 293 ~l~~il~~G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 293 HLKEILDFGATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999997
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=7.1e-87 Score=671.45 Aligned_cols=320 Identities=43% Similarity=0.698 Sum_probs=292.6
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-c-ceEEEEEeccceeccC--CCHHHHHHHHHHHHHHHHHcC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACG 154 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~-~~~~i~IaDlhA~t~~--~~~~~l~~~~~~~~a~~lA~G 154 (427)
++|||||+|||.+|||||+|+|++|+.+ |+ | ++++|+||||||++++ .+++.+++++++++++|+|+|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~l--------Q~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~G 73 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAI--------GEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAG 73 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHH--------HHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHH--------HhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999 77 4 9999999999999987 799999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccch
Q 014300 155 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 234 (427)
Q Consensus 155 iDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ 234 (427)
+||+|++||+||+|++|.+++|+|+|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||
T Consensus 74 ldp~k~~i~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ 151 (337)
T 2el7_A 74 LDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQ 151 (337)
T ss_dssp CCTTTSEEEEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGG
T ss_pred CChhheEEEEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccch
Confidence 999999999999999999999999999999999999999986543 367899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 014300 235 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 314 (427)
Q Consensus 235 ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 314 (427)
+||++++||||+|||+.|| .+|++|+++++.++++||||+ |++|||||++ |+|+|+|+|++|++
T Consensus 152 ~~~i~l~rdla~r~n~~~g------------~~f~~P~~~~~~~~p~l~gld-G~~KMSKS~~---n~I~L~d~p~~i~~ 215 (337)
T 2el7_A 152 VQHIELTREIARRFNHLFG------------ETFPEPQALLNPEAPRVPGID-GKAKMSKSLG---NTIGLLEPEESIWQ 215 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHS------------SCCCCCEEECCTTSCCCBCTT-SSSBCCTTTT---CCCBSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC------------cccCCCeeecccccccccCCC-CccccCCCCC---CeeeCcCCHHHHHH
Confidence 9999999999999999998 579999999987667999994 5679999986 58999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhc
Q 014300 315 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 391 (427)
Q Consensus 315 KI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~-~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~~~~ 391 (427)
||++|+||+.+++.+++.+ |++||++.||++|++. ++++++++|. +++++++|+.||+.|+++|+|+|++|+++++
T Consensus 216 Ki~~a~td~~~~~~~~~~~-p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~ 294 (337)
T 2el7_A 216 KIQHLPDDPQRIRLSDPGD-PERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKK 294 (337)
T ss_dssp HHHTCCCCC--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCccccccCCCC-CchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 9999999999888887755 9999999999999997 9999999997 7999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014300 392 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425 (427)
Q Consensus 392 d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~ 425 (427)
|+++|++||++|++|||++|++||++||++|||.
T Consensus 295 ~~~~l~~il~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 295 DPDYVMDALLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999985
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=2.6e-86 Score=670.56 Aligned_cols=326 Identities=30% Similarity=0.430 Sum_probs=301.7
Q ss_pred CCCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceecc-CCCHHHHHHHHHHHHHHHHHc
Q 014300 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLAC 153 (427)
Q Consensus 75 ~~~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~lA~ 153 (427)
...++++|+||+|||.+|||||+|+|++|+++ |+.++++|+||||||+++ +.+++++++++++++++|+|+
T Consensus 19 ~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~l--------Q~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~ 90 (351)
T 1yi8_B 19 TPARPRVLTGDRPTGALHLGHLAGSLQNRVRL--------QDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAA 90 (351)
T ss_dssp --CCSEEEEEECCSSCCBHHHHHHTHHHHHHH--------TSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeeCCCCCccHHHHHHHHHHHHHH--------HHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999 888999999999999998 689999999999999999999
Q ss_pred CccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhccccceEeccc
Q 014300 154 GIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGE 232 (427)
Q Consensus 154 GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll~~adlvpvG~ 232 (427)
|+||+|++||+||+|++|.++.|+|+|.+++++|+|+++||++....+ .+++++|+|+||+||||||++|++|+||||.
T Consensus 91 Gldp~k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~ 170 (351)
T 1yi8_B 91 GLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGD 170 (351)
T ss_dssp TCCTTTEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECG
T ss_pred CCChhhcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecC
Confidence 999999999999999999999999999999999999999999876554 3678999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 014300 233 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 312 (427)
Q Consensus 233 DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I 312 (427)
||+||++++||||+|||+.|| .+|++|+++++. .++|||| ||++|||||++ |+|+|+|+|++|
T Consensus 171 DQ~~hi~l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i 233 (351)
T 1yi8_B 171 DQLPMLEQTREIVRRFNALYA------------PVLAEPQAQLSR-VPRLPGL-DGQAKMSKSLG---NAIALGDSADEV 233 (351)
T ss_dssp GGHHHHHHHHHHHHHHHHHTC------------SCSCCCEEEECS-SCSCCCT-TSSSCCCTTTT---CCCBTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcc------------cccCCCeeeeec-CccccCC-CCccccCCCCC---CeecCCCCHHHH
Confidence 999999999999999999998 569999998863 3799999 78779999986 589999999999
Q ss_pred HHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC-C-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHH
Q 014300 313 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEE 388 (427)
Q Consensus 313 ~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~-~-~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~ 388 (427)
++||++|+||+.+.+.+++ ++|++++++.++.+|+. . ++++++++|. +++|++||+.||+.|+++|+|+|+||++
T Consensus 234 ~~Ki~~a~td~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~ 312 (351)
T 1yi8_B 234 ARKVMGMYTDPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAE 312 (351)
T ss_dssp HHHHHTCCCCTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999988777776 45777888889988863 3 4588999997 5899999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300 389 IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 426 (427)
Q Consensus 389 ~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~ 426 (427)
+++|+++|++||++|++|||++|++||++||++|||.+
T Consensus 313 ~~~~~~~l~~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 313 YERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999999999999964
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=2e-86 Score=668.78 Aligned_cols=320 Identities=37% Similarity=0.576 Sum_probs=296.5
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CCCHHHHHHHHHHHHHHHHHcC
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACG 154 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~lA~G 154 (427)
..+++|+|++|||.+|||||+|+|++|+.+ |+ |++++|+||||||+|+ +.+++.+++++++++++|+|||
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~l--------Q~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~G 82 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKL--------QEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACG 82 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHH--------HHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHH--------HHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999 76 5999999999999997 7789999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHH---HHHhhCCCCcccccchhhHHHHhhhhccccceEecc
Q 014300 155 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 231 (427)
Q Consensus 155 iDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~---~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG 231 (427)
+||+|++||+||+|++|.++.|+|+|.+++++|+|+++||+ +... .+++++|+|+||+||||||++|++|+||||
T Consensus 83 ldp~k~~if~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG 160 (340)
T 2g36_A 83 IDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVG 160 (340)
T ss_dssp CCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEEC
T ss_pred CChhHeEEEECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcc
Confidence 99999999999999999999999999999999999999998 5433 257899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014300 232 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 311 (427)
Q Consensus 232 ~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~ 311 (427)
.||+||++++||||+|||+.|| ++|++|++++.. .++|||| +|+ |||||++ |+|+|+|+|++
T Consensus 161 ~DQ~~hi~l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~ 222 (340)
T 2g36_A 161 EDQVYHIELTREIARRFNYLYD------------EVFPEPEAILSR-VPKLPGT-DGR-KMSKSYG---NIINLEISEKE 222 (340)
T ss_dssp GGGHHHHHHHHHHHHHHHHHSC------------CCCCCCEEEECC-SCCCCCT-TSS-CCCGGGT---CCCBTTCCHHH
T ss_pred cchHHHHHHHHHHHHHhhhhcc------------cccCCchhhhcc-ccccCCC-Ccc-ccCCCCC---CeEeeeCCHHH
Confidence 9999999999999999999998 579999988753 3799999 575 9999985 68999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC-C-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014300 312 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 312 I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~-~-~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~ 387 (427)
|++||++|+||+.+.+.+++ ++|++||++.||++|++ . ++++++++|. .+++++||+.||+.|+++|+|||+||+
T Consensus 223 i~~Ki~~a~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~ 301 (340)
T 2g36_A 223 LEQTILRMMTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFR 301 (340)
T ss_dssp HHHHHHTCCCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888877 88999999999999985 3 4599999997 478999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014300 388 EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 425 (427)
Q Consensus 388 ~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~ 425 (427)
++++|+++|++||++|++|||++|++||++||++|||.
T Consensus 302 ~~~~~~~~~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 302 KIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999984
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4e-72 Score=572.94 Aligned_cols=287 Identities=20% Similarity=0.281 Sum_probs=246.6
Q ss_pred CCCceEEEecCCCCcchhhhhHHHH-HHHHHhcccccccccc--cceEEEEEeccceeccC--CCHHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIY 150 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylgai-k~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~--~~~~~l~~~~~~~~a~~ 150 (427)
.+++++|||++|||.+|||||+|++ .+| | |+ +++++|+||||||++++ .+++++++++++++++|
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--l--------Q~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~ 140 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--L--------QEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDI 140 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--H--------HHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--H--------HHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999986 555 5 65 78999999999999874 69999999999999999
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhcc-ccceEe
Q 014300 151 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVP 229 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~-~adlvp 229 (427)
+|||+||+|++||+||+|++|.++.|.|++.++++++.++.+|+ +++++|+|+||+|||||||+| ++|+||
T Consensus 141 lA~GlDp~kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vp 212 (392)
T 3jxe_A 141 IAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIP 212 (392)
T ss_dssp HTTCCCTTSEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEE
T ss_pred HHhCcCccceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceee
Confidence 99999999999999999999999999999999999999887664 568999999999999999999 699999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014300 230 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 309 (427)
Q Consensus 230 vG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dsp 309 (427)
||.||+||++||||+|+||| +++|.+++++ +||||+++++|||||+| +|+|+|+|+|
T Consensus 213 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~~---~l~gLdG~~~KMSKS~~--ns~I~L~D~p 269 (392)
T 3jxe_A 213 AAIDQDPYWRLQRDFAESLG------------------YYKTAALHSK---FVPSLTSLSGKMSASKP--ETAIYLTDSP 269 (392)
T ss_dssp EEGGGHHHHHHHHHHTGGGT------------------SCCCEEEEEC---CCCCSSCSSSCCCTTSG--GGCCBTTCCH
T ss_pred cccchHHHHHHHHHHHHHcC------------------CCCCeeeecc---cccCCCCCccccccCCC--CCeeeCCCCH
Confidence 99999999999999999988 4678888864 99999655579999997 3799999999
Q ss_pred HHHHHHhhh-ccCCCCCCcccCC--CCCCCcchHHHHHHhhC---CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhH
Q 014300 310 DVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 381 (427)
Q Consensus 310 e~I~kKI~k-A~Td~~~~~~~~~--~~rpev~nll~i~~~~t---~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~p 381 (427)
++|++|||+ |+||+.+++++++ +++|++|++++||.+|+ ++++++++++|. +++|++||+.||++|+++|+|
T Consensus 270 ~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~p 349 (392)
T 3jxe_A 270 EDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKE 349 (392)
T ss_dssp HHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999988776654 68999999999999986 457899999997 489999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 014300 382 IQVRYEEIMSDSAYLDKVLADGAAK 406 (427)
Q Consensus 382 irer~~~~~~d~~~l~~IL~~Gaek 406 (427)
||+||+++. ++|+++|..|+.+
T Consensus 350 irer~~~~~---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 350 HQRRRKKAE---KLVEKFKYTGKLA 371 (392)
T ss_dssp HHHHHHHHT---TSHHHHHTTSHHH
T ss_pred HHHHHHHHH---HHHHHHHHcCccc
Confidence 999999998 6899999999876
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=5.6e-70 Score=554.83 Aligned_cols=282 Identities=27% Similarity=0.362 Sum_probs=245.4
Q ss_pred CCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCC--CHHHHHHHHHHHHHHHHHc
Q 014300 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLAC 153 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~--~~~~l~~~~~~~~a~~lA~ 153 (427)
.++++||||++|||.+|||||+|+++ |+.+| |++++|+|+||||||+|++. +++.++.++++++++|+||
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~~-~~~lq-------~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~ 139 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVDQ-LIYLQ-------KNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIAL 139 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHHH-HHHHH-------HTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHHH-HHHHH-------hCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHc
Confidence 35789999999999999999998775 55552 56899999999999999854 5688999999999999999
Q ss_pred CccCCceEEEEcCC-cchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhc--------cc
Q 014300 154 GIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQ 224 (427)
Q Consensus 154 GiDp~k~~if~QS~-v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll--------~~ 224 (427)
||||+|++||+||+ +++|.++.|.+++.+++++++++.+ ..+.|.++||+|||||||+ |+
T Consensus 140 GlDP~kt~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~ 208 (372)
T 3a04_A 140 GLDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYR 208 (372)
T ss_dssp TCCTTTCEEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCC
T ss_pred CCChHHcchhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCcc
Confidence 99999999999999 5689999999999999999987632 3578999999999999999 55
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014300 225 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 225 adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
+++||||+||+||+|||||||+|||+.|+ +++|..++++ ++||| +| .|||||+| +|+|+
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~---~~pgl-dG-~KmS~S~~--ns~I~ 267 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVE--------------LERPASTYHK---LQPGL-DG-RKMSSSRP--DSTIF 267 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEEC---CCBCT-TS-SBCCTTSG--GGSCB
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhc---ccCCC-CC-CccCCCCC--Ccccc
Confidence 66999999999999999999999998886 7889988875 89999 56 69999997 59999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccC--CCCCCCcchHHHHHH--hh-CCCCHHHHHHHHh--cCChhhHHHHHHHHHHH
Q 014300 305 LLDPKDVIANKIKRCKTDSSAGLEFD--NLERPECNNLLSIYQ--LI-SGKTKGEVAEECQ--NMNWGTFKPLLTDALIE 377 (427)
Q Consensus 305 L~Dspe~I~kKI~kA~Td~~~~~~~~--~~~rpev~nll~i~~--~~-t~~~~eel~~~y~--~l~~gdlK~~Lae~I~~ 377 (427)
|+|+|++|++|||+|+||+..+.+.. .+++|+++++++++. ++ +++++++++++|. +++||+||+.|++.|++
T Consensus 268 l~D~p~~i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~ 347 (372)
T 3a04_A 268 LTDPPEVARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLER 347 (372)
T ss_dssp TTCCHHHHHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998776643 368999999987543 33 3457899999996 69999999999999999
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHH
Q 014300 378 HLHPIQVRYEEIMSDSAYLDKVL 400 (427)
Q Consensus 378 ~L~pirer~~~~~~d~~~l~~IL 400 (427)
+|+|+|+||++. +++++++|
T Consensus 348 ~l~p~rer~e~~---~~~~~kil 367 (372)
T 3a04_A 348 FLAEHQSRLEKA---KTIAWKLV 367 (372)
T ss_dssp HHHHHHHHHHHH---HHHHHTSC
T ss_pred HHHHHHHHHHHh---HHHHHHHh
Confidence 999999999864 34566554
No 12
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=5.8e-67 Score=532.70 Aligned_cols=279 Identities=20% Similarity=0.284 Sum_probs=241.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHHH--HHHHhcccccccccc-cceEEEEEeccceeccC---CCHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIY 150 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik--~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~l~~~~~~~~a~~ 150 (427)
++++||+||+|||.+|||| |+++ +|+.+ |+ +++++|+||||||++++ .+++++++++.+++++|
T Consensus 55 ~~~~iy~G~~PTg~lHlG~--gvl~~~~~~~l--------Q~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~ 124 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQ--GLLKSIIVNKL--------TSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVW 124 (373)
T ss_dssp SSCEEEEEECCCSSCBHHH--HHHHHHHHHHH--------HTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCCceehh--hHHHHHHHHHH--------HHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999 4444 46777 66 79999999999999973 58999999999999999
Q ss_pred HHcCccCCceEEEEcCCcc-hhhHHHHHHhc----cccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhcccc
Q 014300 151 LACGIDNSKASVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS 225 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~-~~~eL~w~L~~----~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~a 225 (427)
+|+|+||+|++||+||+|+ +|++++|.+.+ .++++|+.++.+++.+. . .+++++|+|+||+||||||++|++
T Consensus 125 ~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~--~-~~~~~~g~f~YPlLQaaDil~l~a 201 (373)
T 3vgj_A 125 KSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS--E-GEENYCSQILYPCMQCADIFFLNV 201 (373)
T ss_dssp HHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC--T-TSCCBTHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh--c-cCCCChHHHHHHHHHHhcccccCC
Confidence 9999999999999999998 89999998765 67999999999987432 1 257899999999999999999999
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014300 226 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 305 (427)
Q Consensus 226 dlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 305 (427)
|+||||.||+||++++||+|+|||+.|+ |..+.. ++||||+||++|||||+| +|+|+|
T Consensus 202 d~vpgG~DQ~~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L 259 (373)
T 3vgj_A 202 DICQLGIDQRKVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFM 259 (373)
T ss_dssp SEECCBGGGHHHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBT
T ss_pred cEEEcchhhHHHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeec
Confidence 9999999999999999999999996553 444444 499999889889999987 489999
Q ss_pred CCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHh--------h------------CCCCHHHHHHHHh--cCC
Q 014300 306 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQ--NMN 363 (427)
Q Consensus 306 ~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~--------~------------t~~~~eel~~~y~--~l~ 363 (427)
+|+|++|++|||+|+||+. +++.|+++.|+++ | +++++++++++|. +++
T Consensus 260 ~D~p~~i~~KI~kA~td~~---------~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~ 330 (373)
T 3vgj_A 260 DDSESDVNRKIKKAYCPPN---------VIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIH 330 (373)
T ss_dssp TCCHHHHHHHHHHSCCCTT---------CCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHhCcCCCC---------CCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCC
Confidence 9999999999999999863 3455666665443 2 2468999999997 589
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHH
Q 014300 364 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 399 (427)
Q Consensus 364 ~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~I 399 (427)
|++||+.||++|+++|+|||++|++..+..+++++|
T Consensus 331 ~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 331 PLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 999999999999999999999999887777777665
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-67 Score=538.45 Aligned_cols=275 Identities=22% Similarity=0.286 Sum_probs=244.6
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccC---CCHHHHHHHH-HHHH----
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA---- 147 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~l~~~~-~~~~---- 147 (427)
.++++|+||+|||.+|||||++++++|++| |+ |++++|+||||||++++ .+++++++++ .+++
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~l--------Q~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~ 103 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADF--------QKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGME 103 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHH--------HHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHH
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHH--------HHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999 66 59999999999999985 3899999999 8898
Q ss_pred HHHHHcCccCCceEEEEcCCcchhhHHHHHH----hccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhcc
Q 014300 148 AIYLACGIDNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY 223 (427)
Q Consensus 148 a~~lA~GiDp~k~~if~QS~v~~~~eL~w~L----~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~ 223 (427)
++|+|||+||+|++||+||+|++|. ++|.+ ++.++++||.|+.+||++. . .+++++|+|+||+||||||++|
T Consensus 104 ~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~ 179 (375)
T 2cyc_A 104 KSIEVMGGDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQ 179 (375)
T ss_dssp HHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 89998 9999999999999999643 2 2568999999999999999999
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhh---hh-cCccccccCCCCCccccCCceecCCCCcccccCCCC-----------
Q 014300 224 QSDFVPVGEDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------- 288 (427)
Q Consensus 224 ~adlvpvG~DQ~qh~eLaRdiA~r~n~---~y-g~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg----------- 288 (427)
++|+||||.||+||++++||+|+|||+ .| | ..| +|..+.. ++||||++|
T Consensus 180 ~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g------------~~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~ 243 (375)
T 2cyc_A 180 GVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEG------------EKL-KPVAVHH---HLLLGLQEPPKWPIESEEEF 243 (375)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETT------------EEE-CCEEEEE---CCCBCSSCCSSSSCCSHHHH
T ss_pred CCCeecccchHHHHHHHHHHHHHHhCCccccccc------------ccC-ccEEecc---ccccCCCCcccccccchhhh
Confidence 999999999999999999999999997 23 2 112 5665544 599999654
Q ss_pred -----CCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhC---------------
Q 014300 289 -----LSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------- 348 (427)
Q Consensus 289 -----~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t--------------- 348 (427)
++|||||+|+ |+|+|+|+|++|++|||+|+||+. +++.|+++.|+++|+
T Consensus 244 ~~~~~~~KMSKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~ 312 (375)
T 2cyc_A 244 KEIKAQMKMSKSKPY--SAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAK 312 (375)
T ss_dssp HHHHHHHBGGGSCGG--GSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGG
T ss_pred hhhhhhhcccCCCCC--CeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchh
Confidence 4899999974 899999999999999999999863 457789999998875
Q ss_pred ------CCCHHHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014300 349 ------GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 390 (427)
Q Consensus 349 ------~~~~eel~~~y~~--l~~gdlK~~Lae~I~~~L~pirer~~~~~ 390 (427)
++++++++++|.+ ++|++||+.||+.|+++|+|+|++|++..
T Consensus 313 ~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~ 362 (375)
T 2cyc_A 313 FGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHP 362 (375)
T ss_dssp GTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred ccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4579999999974 89999999999999999999999999653
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=4.4e-67 Score=529.54 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=227.1
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCC---CHHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLA 152 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~---~~~~l~~~~~~~~a~~lA 152 (427)
.++++|+|++|||.+|||||++++++|+.+ |+ |++++|+||||||++++. +++++++++++++++|+|
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~l--------Q~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la 110 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNM--------IECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKA 110 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHH--------HHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHH--------HHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999 76 699999999999999854 899999999999999999
Q ss_pred cCccCCceEEEEcCCc-chhhHHHHHHhc----cccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhcc---c
Q 014300 153 CGIDNSKASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---Q 224 (427)
Q Consensus 153 ~GiDp~k~~if~QS~v-~~~~eL~w~L~~----~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~---~ 224 (427)
+|+||+|++||+||+| ++|. ++|.+.+ .++++++.++.+++.+. . .+++++|+|+||+||||||++| +
T Consensus 111 ~Gldp~k~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~--~-~~~i~~g~f~YP~lQaaDil~~~~~~ 186 (348)
T 2j5b_A 111 CGINLDGTRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN--E-SDCLKASQIFYPCMQAADVFELVPEG 186 (348)
T ss_dssp TTCCGGGEEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTC
T ss_pred hcCCccceEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh--c-cCCcChHHHhhHHHHHHHHHHHhcCC
Confidence 9999999999999998 6777 8999876 78888888888887532 1 2568999999999999999999 9
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014300 225 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 304 (427)
Q Consensus 225 adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 304 (427)
+|+||||.||+||++++||+|+|||+. .|..+.. ++||||+||++|||||+|+ |+|+
T Consensus 187 ~~~~~~G~DQ~~~i~l~Rdia~r~~~~------------------~p~~~~~---~~l~gL~dg~~KMSKS~~~--~~I~ 243 (348)
T 2j5b_A 187 IDICQLGIDQRKVNMLAIEYANDRGLK------------------IPISLSH---HMLMSLSGPKKKMSKSDPQ--GAIF 243 (348)
T ss_dssp CSEECCBGGGHHHHHHHHHHHHHTTCC------------------CCEEEEB---CCCCCTTCSSCCCSTTCGG--GSCB
T ss_pred CcEEEeccChHHHHHHHHHHHHHhCCC------------------CceeecC---ccccCCCCcccccccCCCC--CeEe
Confidence 999999999999999999999999843 2555443 5999998888899999874 8999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhh-------------CCCCHHHHHHHHhcCChhhHHHHH
Q 014300 305 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------SGKTKGEVAEECQNMNWGTFKPLL 371 (427)
Q Consensus 305 L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~-------------t~~~~eel~~~y~~l~~gdlK~~L 371 (427)
|+|+|++|++|||+|+||+. .++ |+++.|+.++ +++++++++++|.+++|++||+.|
T Consensus 244 L~d~p~~i~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~l 313 (348)
T 2j5b_A 244 MDDTEQEVSEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDV 313 (348)
T ss_dssp TTCCHHHHHHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHH
T ss_pred ecCCHHHHHHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHH
Confidence 99999999999999999874 356 7788877653 467899999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 014300 372 TDALIEHLHPIQVRYEEI 389 (427)
Q Consensus 372 ae~I~~~L~pirer~~~~ 389 (427)
|++|+++|+|||++|++.
T Consensus 314 a~~l~~~l~pir~~~~~~ 331 (348)
T 2j5b_A 314 ANYINTIIDLVREHFKKP 331 (348)
T ss_dssp HHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999865
No 15
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.5e-66 Score=528.45 Aligned_cols=269 Identities=21% Similarity=0.282 Sum_probs=236.6
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccC---CCHHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLA 152 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~l~~~~~~~~a~~lA 152 (427)
.++++|+||+|||.+|||| +|+|++|+++ |+ +++++|+||||||++++ .+++.+++++++++++|+|
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~l--------Q~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la 104 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDL--------VEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEA 104 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHH--------HHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHH--------HHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999 8899999999 76 69999999999999985 6999999999999999999
Q ss_pred cCccCCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceE
Q 014300 153 CGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 228 (427)
Q Consensus 153 ~GiDp~k~~if~QS~v~~~~eL~w~----L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlv 228 (427)
+|+||+|++||+||+|++| +++|. ++|.+++++|.|+.+|+++.. +...+++|+|+||+||||||++|++|+|
T Consensus 105 ~G~dp~k~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v 181 (364)
T 2cya_A 105 AGVPVERVRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIA 181 (364)
T ss_dssp TTCCGGGCEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEE
T ss_pred hCCCccceEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEE
Confidence 9999999999999999988 67888 999999999999999997543 2235889999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCC---------------CCCccc
Q 014300 229 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMS 293 (427)
Q Consensus 229 pvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~d---------------g~~KMS 293 (427)
|||.||+||++++||+|+||| +++|..++. ++||||++ |++|||
T Consensus 182 ~~G~DQ~~~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMS 240 (364)
T 2cya_A 182 LGGMDQRKAHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMS 240 (364)
T ss_dssp EEEGGGHHHHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCC
T ss_pred eccchHHHHHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccC
Confidence 999999999999999999988 346777665 49999964 368999
Q ss_pred cCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCC---------------------CCH
Q 014300 294 KSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG---------------------KTK 352 (427)
Q Consensus 294 KS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~---------------------~~~ 352 (427)
||+++ |+|+|+|+|++|++|||+|+||+. +++.|+++.|+++|+. +++
T Consensus 241 KS~~~--~~I~L~d~p~~i~~Ki~~a~td~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~ 309 (364)
T 2cya_A 241 KSKPE--TAVFVVDSDDDIRRKIRKAYCPAK---------QVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSY 309 (364)
T ss_dssp SSSGG--GSCBTTCCHHHHHHHHHTSCCCTT---------CCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSH
T ss_pred CCCCC--CEeeccCCHHHHHHHHHhCcCCCC---------CCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHH
Confidence 99874 899999999999999999999874 4567889999988652 489
Q ss_pred HHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014300 353 GEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEI 389 (427)
Q Consensus 353 eel~~~y~~--l~~gdlK~~Lae~I~~~L~pirer~~~~ 389 (427)
++++++|.+ +++++||+.||+.|+++|+|+|++|++.
T Consensus 310 ~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 310 EELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999974 8999999999999999999999999853
No 16
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.3e-67 Score=546.04 Aligned_cols=302 Identities=16% Similarity=0.203 Sum_probs=251.3
Q ss_pred CCceEEEecCCC-CcchhhhhHHHHHHHHHhcccccccccc--cceEEEEEeccceeccC--CCHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL 151 (427)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylgaik~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~--~~~~~l~~~~~~~~a~~l 151 (427)
+++++|+||+|| |.+|||||+++++ ...| |+ ++.++|+|||+||++.+ .+++.+++++.+++++|+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~-l~~l--------Q~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~l 171 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVF-TKWL--------QEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDII 171 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHH-HHHH--------HHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHH-HHHH--------HHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999 8999999997653 2224 75 68899999999998863 489999999999999999
Q ss_pred HcCccCCceEEEEcCCcc--hhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhc------
Q 014300 152 ACGIDNSKASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL------ 222 (427)
Q Consensus 152 A~GiDp~k~~if~QS~v~--~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll------ 222 (427)
|+|+||+|++||+||+|+ .+.++.| +++||++++++.++.+ .++.++|+|+||+||||||++
T Consensus 172 A~GlDp~k~~i~~nSd~~~~~~~~~~~---------~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~ 242 (432)
T 2ip1_A 172 AVGFDPKNTFIFSDLQYMGGAFYETVV---------RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNV 242 (432)
T ss_dssp TTTCCGGGEEEEEHHHHCSHHHHHHHH---------HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTT
T ss_pred HhCCCCCceEEEeCchhhhhhHHHHHH---------HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchh
Confidence 999999999999999997 6777777 3678999998877664 467899999999999999999
Q ss_pred -----cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 223 -----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 223 -----~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
|++++||||.||++|++++||+|+||| |++|..++. ++||||+++++|||||.+
T Consensus 243 ~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~ 301 (432)
T 2ip1_A 243 LGLPDKTPCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD 301 (432)
T ss_dssp TCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG
T ss_pred hcccCCCceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC
Confidence 679999999999999999999999988 567887664 499999654579999986
Q ss_pred CCCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHHHH
Q 014300 298 SDQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPL 370 (427)
Q Consensus 298 ~~~s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~~~--~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK~~ 370 (427)
+ ++|+|+|+|++|++||++ |+||+..+.++++ +++|++++++.|+.+|+ ++++++|+++|. +++++++|+.
T Consensus 302 n--saI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~ 379 (432)
T 2ip1_A 302 T--TAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKL 379 (432)
T ss_dssp G--GCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred C--CeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 699999999999999999 9999876544433 48899999999999884 457888999997 3899999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014300 371 LTDALIEHLHPIQVRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 419 (427)
Q Consensus 371 Lae~I~~~L~pirer~~~~~~d----~~~l~~IL~~GaekAr~iA~~tl~~Vr 419 (427)
||+.|+++|+|+|+||+++.++ +.++++++.+|++|||++|.+||++|+
T Consensus 380 La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 380 CIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988 788899999999999999999999986
No 17
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1e-65 Score=527.41 Aligned_cols=275 Identities=17% Similarity=0.209 Sum_probs=241.6
Q ss_pred CCCceEEEecCCCC-cchhhhhHHH-HHHHHHhcccccccccc--cceEEEEEeccceecc-CCCHHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQPFCDLMLQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIY 150 (427)
Q Consensus 76 ~~~~~i~sGi~PTG-~lHLGnylga-ik~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~ 150 (427)
.+++++|||++||| .+|||||+|+ +.+| | |+ ++.++|+|||+||++. +.+++++++++++++++|
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--l--------Q~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~ 168 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--M--------QDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDI 168 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--H--------HHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35789999999998 7999999998 4555 5 66 5778999999999865 579999999999999999
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhh--------
Q 014300 151 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------- 221 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl-------- 221 (427)
+|||+||+|++||.||+|++ .+...+++|.|+++|+++.+..+ .+++++|+|+||+|||||++
T Consensus 169 lA~GlDp~k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il 240 (406)
T 3tze_A 169 VTLGFDPKLTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIG 240 (406)
T ss_dssp HTTTCCGGGEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSC
T ss_pred HHcCCCccceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhc
Confidence 99999999999999999986 34557889999999999988876 46789999999999999954
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCC-CccccCCCCCC
Q 014300 222 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQ 300 (427)
Q Consensus 222 l~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~-~KMSKS~p~~~ 300 (427)
.+++|+||||.||+||++++||+|+||| +++|..+.. ++|||| +|. +|||||+| +
T Consensus 241 ~~~a~lvpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~ 296 (406)
T 3tze_A 241 KGAMCLVPAAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--N 296 (406)
T ss_dssp TTCEEEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--G
T ss_pred cCCCeEEeeccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--C
Confidence 5689999999999999999999999988 567888764 499999 554 69999987 4
Q ss_pred ceeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHHHHHHH
Q 014300 301 SRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTD 373 (427)
Q Consensus 301 s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~--~~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK~~Lae 373 (427)
|+|+|+|+|++|++|||+ |+||+..++++ +.+++|++||++.||++|+ ++++++++++|. +++|++||+.||+
T Consensus 297 ~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae 376 (406)
T 3tze_A 297 SSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVV 376 (406)
T ss_dssp GSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999 99999988776 4579999999999999997 457899999996 5899999999999
Q ss_pred HHHHhhhHHHHHHHHHhcC
Q 014300 374 ALIEHLHPIQVRYEEIMSD 392 (427)
Q Consensus 374 ~I~~~L~pirer~~~~~~d 392 (427)
.|+++|+|||+||+++++|
T Consensus 377 ~i~~~l~pirer~~~~~~d 395 (406)
T 3tze_A 377 VIQEFVSRYQESRKRVTDD 395 (406)
T ss_dssp HHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998754
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=9.1e-65 Score=550.22 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=248.1
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccC---CCHHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLA 152 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~l~~~~~~~~a~~lA 152 (427)
++++||+||+|||.+||||++....+|+.+ |+ +++++|+||||||++++ .+++++++++.+++++|+|
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~l--------Q~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA 110 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKC--------TAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKA 110 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHH--------HHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHH--------HHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 478999999999999999954222246777 55 79999999999999973 5889999999999999999
Q ss_pred cCccCCceEEEEcCC-cchhhHHHHHHh----ccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccce
Q 014300 153 CGIDNSKASVFVQSH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 227 (427)
Q Consensus 153 ~GiDp~k~~if~QS~-v~~~~eL~w~L~----~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adl 227 (427)
+|+||+|++||+||+ +++|++++|.+. +.++++||.|+.+++.+. . +++++|+|+||+||||||++|++|+
T Consensus 111 ~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~--~--~~i~~g~f~YPlLQAaDil~~~ad~ 186 (690)
T 3p0j_A 111 AGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT--E--GTLTAAQVLYPLMQCCDIFFLKADI 186 (690)
T ss_dssp TTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSE
T ss_pred cCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc--c--CCCchhhHhhHHHHHHHHHhhCCCE
Confidence 999999999999999 689999999875 479999999999998532 2 2389999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014300 228 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 307 (427)
Q Consensus 228 vpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 307 (427)
||||.||+||++++||+|+|||+.|+ |..+.. ++||||+||++|||||++ +|+|+|+|
T Consensus 187 vpvG~DQ~~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D 244 (690)
T 3p0j_A 187 CQLGLDQRKVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMED 244 (690)
T ss_dssp ECCBGGGHHHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTC
T ss_pred EeccccHHHHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccC
Confidence 99999999999999999999996543 444443 599999889889999986 38999999
Q ss_pred CHHHHHHHhhhccCCCCCCc--ccCCCCC----CCcchHHHHHHhh--------------CCCCHHHHHHHHh--cCChh
Q 014300 308 PKDVIANKIKRCKTDSSAGL--EFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWG 365 (427)
Q Consensus 308 spe~I~kKI~kA~Td~~~~~--~~~~~~r----pev~nll~i~~~~--------------t~~~~eel~~~y~--~l~~g 365 (427)
+|++|++|||+|+||+.... +...++. +++|++|+|+.++ +++++++++++|. +++|+
T Consensus 245 ~p~~i~kKI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~ 324 (690)
T 3p0j_A 245 TEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSED 324 (690)
T ss_dssp CHHHHHHHHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHH
T ss_pred CHHHHHHHHHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHH
Confidence 99999999999999986521 1122233 6899999999986 3468999999997 58999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHH
Q 014300 366 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 401 (427)
Q Consensus 366 dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL~ 401 (427)
+||+.|++.|+++|+|||+||+++.++++++++|++
T Consensus 325 dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 325 ALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 999999999999999999999999999999999876
No 19
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=3.2e-65 Score=521.10 Aligned_cols=280 Identities=16% Similarity=0.211 Sum_probs=244.8
Q ss_pred CCCceEEEecCCCCcchhhhhHHH-HHHHHHhcccccccccc--cceEEEEEeccceeccC-CCHHHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYL 151 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylga-ik~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~l~~~~~~~~a~~l 151 (427)
.+++++|||++|||.+|||||+|+ +.+| | |+ ++.++|+|+|+||++++ .+++++++++++++++|+
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--l--------Q~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~l 149 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--L--------QDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYIL 149 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--H--------HHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--H--------HHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 347899999999999999999998 6666 5 66 57889999999999985 799999999999999999
Q ss_pred HcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhh--------c
Q 014300 152 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------L 222 (427)
Q Consensus 152 A~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------l 222 (427)
|||+||+|++||+||+|++ +|.+.+++|.|+++|+++.+..+ .+++++|+|+||+||||||+ .
T Consensus 150 A~GlDp~kt~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~ 221 (386)
T 3hzr_A 150 AFGFNEDKTFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFS 221 (386)
T ss_dssp HTCCCGGGEEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCS
T ss_pred HcCCCCcceEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhC
Confidence 9999999999999999986 55678899999999999988776 46799999999999999766 4
Q ss_pred cc-cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQ-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~-adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
++ +|+||||.||+||++|+||+|+||| +++|..+.. ++|||| +|.+|||||++ +|
T Consensus 222 ~~~a~~VpvG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~ 277 (386)
T 3hzr_A 222 SPARCLVLDSIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HN 277 (386)
T ss_dssp SCCEEEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TT
T ss_pred CCCccccccccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CC
Confidence 66 9999999999999999999999998 457755533 599999 45469999987 59
Q ss_pred eeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHHHHHHHH
Q 014300 302 RINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDA 374 (427)
Q Consensus 302 ~I~L~Dspe~I~kKI~k-A~Td~~~~~~~--~~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK~~Lae~ 374 (427)
+|+|+|+|++|++|||+ |+||++.+.+. ..+++|+++++++||.+|+ ++++++++++|. +++|++||+.||++
T Consensus 278 ~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~ 357 (386)
T 3hzr_A 278 SILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSAS 357 (386)
T ss_dssp SCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999 99998765432 3468899999999999995 447899999996 68999999999999
Q ss_pred HHHhhhHHHHHHHHHhcCHHHHHHH
Q 014300 375 LIEHLHPIQVRYEEIMSDSAYLDKV 399 (427)
Q Consensus 375 I~~~L~pirer~~~~~~d~~~l~~I 399 (427)
|+++|+|||+||+++.+| .|++-
T Consensus 358 i~~~l~pirer~~~~~~~--~~~~~ 380 (386)
T 3hzr_A 358 MKDFIVAYDAKKKPITTA--YLKAY 380 (386)
T ss_dssp HHHHHHHHHHHHTTCCHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHH
Confidence 999999999999998753 45543
No 20
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=8.9e-64 Score=511.73 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=234.1
Q ss_pred CCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--cceEEEEEeccceecc--CCCHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIY 150 (427)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylgai-k~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~--~~~~~~l~~~~~~~~a~~ 150 (427)
+++++|+|++|| |.+|||||++++ .+| | |+ ++.++|+|+|+|+++. ..+++++++++++++++|
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--l--------Q~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~ 142 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--L--------QDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDI 142 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--H--------HHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--H--------HHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 468999999999 689999999887 333 4 77 4578999999999665 469999999999999999
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhh-------c
Q 014300 151 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------L 222 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl-------l 222 (427)
+|+|+||+|++||.||+|++ .+...+.++.|+++++++.+..+ .+++++|+|+||+||||||+ +
T Consensus 143 lA~GlDp~kt~i~~ns~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~ 214 (393)
T 3hv0_A 143 IACGFDPELTFIFTNLEYIA--------ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIF 214 (393)
T ss_dssp HTTCCCTTTEEEEEHHHHHH--------HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHH
T ss_pred HHcCCCCcceEEEECCHHHH--------HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHh
Confidence 99999999999999999975 12345678899999999888776 46899999999999999996 3
Q ss_pred c-c---cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014300 223 Y-Q---SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 298 (427)
Q Consensus 223 ~-~---adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 298 (427)
+ + +++||||.||++|++++||+|+||| +++|..+.. ++||||+++++|||||++
T Consensus 215 ~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~- 272 (393)
T 3hv0_A 215 GGRTDIHCLVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQ- 272 (393)
T ss_dssp TTCSCCCEEEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC--------------
T ss_pred cccCCCceecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCC-
Confidence 3 3 4889999999999999999999987 567887765 499999544479999997
Q ss_pred CCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCCcchHHHHHHhh--CCCCHHHHHHHHh--cCChhhHHHHH
Q 014300 299 DQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLL 371 (427)
Q Consensus 299 ~~s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~~~--~~rpev~nll~i~~~~--t~~~~eel~~~y~--~l~~gdlK~~L 371 (427)
+|+|+|+|+|++|++|||+ |+||+..++++++ +++|++|+++.||.+| +++++++++++|. +++|++||+.|
T Consensus 273 -nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~l 351 (393)
T 3hv0_A 273 -NSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSIL 351 (393)
T ss_dssp -CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred -CCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4799999999999999999 9999998888764 7899999999999998 4568999999996 68999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhcCHHHHHHHHH
Q 014300 372 TDALIEHLHPIQVRYEEIMSDSAYLDKVLA 401 (427)
Q Consensus 372 ae~I~~~L~pirer~~~~~~d~~~l~~IL~ 401 (427)
++.|+++|+|+|+||+++.+| .|++++.
T Consensus 352 ae~i~~~l~pirer~~~~~~d--~~~~~~~ 379 (393)
T 3hv0_A 352 VQELVKLTKNHQKNREAINDD--VIAKFTN 379 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCHH--HHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHh--HHHHHhC
Confidence 999999999999999999865 4777763
No 21
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.8e-63 Score=515.36 Aligned_cols=280 Identities=21% Similarity=0.286 Sum_probs=243.4
Q ss_pred CCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--cceEEEEEeccceeccC--CCHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIY 150 (427)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylgai-k~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~--~~~~~l~~~~~~~~a~~ 150 (427)
+++++|+|++|| |.+|||||+|++ .+| | |+ ++.++|+|+|+||++.+ .+++++++++++++++|
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--l--------Q~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~ 159 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--L--------QDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDI 159 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--H--------HHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--H--------HHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHH
Confidence 478999999999 889999999887 444 5 66 57789999999999864 59999999999999999
Q ss_pred HHcCccCCceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhh------
Q 014300 151 LACGIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDIL------ 221 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~---~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl------ 221 (427)
+|||+||+|++||+||+|++ +.++.|.|++.++++++.+...|+ +++++|+|+||+||||||+
T Consensus 160 lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~ 231 (451)
T 3foc_A 160 IACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDG 231 (451)
T ss_dssp HTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTT
T ss_pred HHcCCCCCceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCC
Confidence 99999999999999999975 667788888888888887775543 5689999999999999998
Q ss_pred ------------------------------------ccccc-----------------eEecccchHHHHHHHHHHHHHH
Q 014300 222 ------------------------------------LYQSD-----------------FVPVGEDQKQHLELTRELAERV 248 (427)
Q Consensus 222 ------------------------------------l~~ad-----------------lvpvG~DQ~qh~eLaRdiA~r~ 248 (427)
+|++| +||||.||+||+|||||||++|
T Consensus 232 ~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rf 311 (451)
T 3foc_A 232 LPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRM 311 (451)
T ss_dssp SGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTT
T ss_pred CCccccccccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHh
Confidence 34444 9999999999999999999998
Q ss_pred hhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh-ccCCCCCCc
Q 014300 249 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGL 327 (427)
Q Consensus 249 n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k-A~Td~~~~~ 327 (427)
| +++|..+.. ++||||+++++|||||++ +|+|+|+|+|++|++|||+ |+||+..++
T Consensus 312 n------------------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~~~ 368 (451)
T 3foc_A 312 G------------------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRDTE 368 (451)
T ss_dssp T------------------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCSSH
T ss_pred C------------------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCccc
Confidence 8 467777654 599999655579999997 3799999999999999999 999998876
Q ss_pred cc--CCCCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHH
Q 014300 328 EF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 399 (427)
Q Consensus 328 ~~--~~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~I 399 (427)
++ .++++|++||++.||.+|+ ++++++++++|. +++|++||+.|++.|+++|+|+|+||+++.+ +.|++.
T Consensus 369 ~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~--d~v~~f 444 (451)
T 3foc_A 369 EEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT--TMIESF 444 (451)
T ss_dssp HHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHH
T ss_pred hhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 65 5689999999999999994 557899999997 5899999999999999999999999999875 345554
No 22
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=4.5e-64 Score=514.24 Aligned_cols=288 Identities=17% Similarity=0.220 Sum_probs=218.9
Q ss_pred CCCceEEEecCCCC-cchhhhhHHH-HHHHHHhcccccccccc--cceEEEEEeccceecc-CCCHHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQPFCDLMLQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIY 150 (427)
Q Consensus 76 ~~~~~i~sGi~PTG-~lHLGnylga-ik~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~-~~~~~~l~~~~~~~~a~~ 150 (427)
.+++++|+|++||| .+|||||+++ +.+| | |+ ++.++|+|+|+|++++ +.+++++++++++++++|
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--l--------Q~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~ 145 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--L--------QDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDI 145 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--H--------HHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 35789999999999 7999999987 3333 4 77 5678889999977665 679999999999999999
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHh--------hhh
Q 014300 151 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DIL 221 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAA--------DIl 221 (427)
+|||+||+|++||.||+|++ .| ...+++|.|+++|+++.+..+ .+++++|+|+||+|||| ||+
T Consensus 146 lA~GlDp~kt~i~~ns~~~~----~~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIl 217 (395)
T 3i05_A 146 IAMGFDPELTFIFRDFDYMG----CM----YRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIF 217 (395)
T ss_dssp HTTTCCTTSEEEEEHHHHTT----TS----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTS
T ss_pred HHcCCCCCceEEEEcCHHHH----HH----HHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhh
Confidence 99999999999999999976 12 245778999999999988776 46789999999999999 778
Q ss_pred ccc----cceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 222 LYQ----SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 222 l~~----adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
+|+ +|+||||.||+||++++||+|+||| +++|..+.. ++||||+++++||||| +
T Consensus 218 l~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~ 275 (395)
T 3i05_A 218 PPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S 275 (395)
T ss_dssp CGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC------------
T ss_pred cccccCCceEEEeccchHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C
Confidence 899 9999999999999999999999988 356777654 4999995444799999 4
Q ss_pred CCCceeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHhh--CCCCHHHHHHHHh--cCChhhHHHH
Q 014300 298 SDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPL 370 (427)
Q Consensus 298 ~~~s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~--~~~~rpev~nll~i~~~~--t~~~~eel~~~y~--~l~~gdlK~~ 370 (427)
+|+|+|+|+|++|++|||+ |+||+..++++ +++++|++||++.||.+| +++++++++++|. +++|++||+.
T Consensus 276 --~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~ 353 (395)
T 3i05_A 276 --GTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKL 353 (395)
T ss_dssp ----CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHH
T ss_pred --CCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHH
Confidence 6999999999999999999 99999877664 668999999999999999 4668999999997 5899999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhcCHHHHHHHHH----HHHHHH
Q 014300 371 LTDALIEHLHPIQVRYEEIMSDSAYLDKVLA----DGAAKA 407 (427)
Q Consensus 371 Lae~I~~~L~pirer~~~~~~d~~~l~~IL~----~GaekA 407 (427)
|++.|+++|+|||+||+++.+| .|++.+. .|+++|
T Consensus 354 lae~i~~~l~pirer~~~~~~d--~~~~~~~~~~~~~~~~~ 392 (395)
T 3i05_A 354 LINTITAITKTHQEKRKLVTDE--DVQLFTSTRIMGPAKKA 392 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHH--HHHHHHSCCCCTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--HHHHHhChhcccchhhh
Confidence 9999999999999999998854 5666663 666665
No 23
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.3e-62 Score=492.36 Aligned_cols=264 Identities=24% Similarity=0.344 Sum_probs=237.0
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCC-CHHHHHHHHHHHHHHHHHcC
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACG 154 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~l~~~~~~~~a~~lA~G 154 (427)
+++++|+|++|||.+||||+ +++++|+.+ |+ +++++|+||||||++.+. +++++++++++++++|+|+|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~l--------q~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~G 101 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDL--------QEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALG 101 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHH--------HHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHH--------HHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 46899999999999999985 799999999 77 799999999999999865 99999999999999999999
Q ss_pred ccCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecc
Q 014300 155 IDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 231 (427)
Q Consensus 155 iDp~k~~if~QS~v~---~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG 231 (427)
+||+|++||+||+|+ +|.++.|.++|.++++++.|+.+++.+ .. ++.++|+|+||+||||||++|++|+||||
T Consensus 102 ldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G 177 (323)
T 2cyb_A 102 LDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--RK--EDPMVSQMIYPLMQALDIAHLGVDLAVGG 177 (323)
T ss_dssp CCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--CS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--cc--CCCCchhhhhHHHHHHHHHhcCCCEEEec
Confidence 999999999999996 789999999999999999998776532 11 34599999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014300 232 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 311 (427)
Q Consensus 232 ~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~ 311 (427)
.||++|++++|++|++|| ++.|..++.+ +||+| +| +||||| + +|+|+|+|+|++
T Consensus 178 ~DQ~~~~~l~rdla~~~~------------------~~~p~~l~~p---ll~~l-~G-~KMSKS-~--~n~I~l~d~p~~ 231 (323)
T 2cyb_A 178 IDQRKIHMLARENLPRLG------------------YSSPVCLHTP---ILVGL-DG-QKMSSS-K--GNYISVRDPPEE 231 (323)
T ss_dssp GGGHHHHHHHHHHGGGGT------------------CCCCEEEEEC---CCBCT-TS-SBCCTT-T--TCSCBTTCCHHH
T ss_pred hhhHHHHHHHHHHHHhcC------------------CCCceEEecC---cccCC-CC-CcccCC-c--CceeCCCCCHHH
Confidence 999999999999999988 3457666654 99999 56 799999 4 589999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhC--------------------CCCHHHHHHHHhc--CChhhHHH
Q 014300 312 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQN--MNWGTFKP 369 (427)
Q Consensus 312 I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t--------------------~~~~eel~~~y~~--l~~gdlK~ 369 (427)
|++||++|+||+. .++.|+++.|+++|. ++++++++++|.+ ++|++||+
T Consensus 232 i~~Ki~~a~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~ 302 (323)
T 2cyb_A 232 VERKIRKAYCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKI 302 (323)
T ss_dssp HHHHHHTSCCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhcCCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999863 456799999999873 3589999999973 89999999
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 014300 370 LLTDALIEHLHPIQVRYEE 388 (427)
Q Consensus 370 ~Lae~I~~~L~pirer~~~ 388 (427)
.|+++|+++|+|||+||++
T Consensus 303 ~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 303 AVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999975
No 24
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=3e-61 Score=480.87 Aligned_cols=257 Identities=25% Similarity=0.303 Sum_probs=228.1
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCC-CHHHHHHHHHHHHHHHHHcC
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACG 154 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~l~~~~~~~~a~~lA~G 154 (427)
.++++|+||+|||.+|||| ++++++|+.+ |+ +++++|+|||+||++++. +++++++++.+++++|+|+|
T Consensus 27 ~~~~vy~G~~PTg~lHlGh-l~~l~~~~~l--------Q~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G 97 (314)
T 2zp1_A 27 DEKSAYIGFEPSGKIHLGH-YLQIKKMIDL--------QNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMG 97 (314)
T ss_dssp SSEEEEEEECCCSSCBHHH-HHHHHHHHHH--------HHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEccCCCCCcchhh-HHHHHHHHHH--------HHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999 8899999999 76 699999999999999864 89999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEec
Q 014300 155 IDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 230 (427)
Q Consensus 155 iDp~k~~if~QS~v~~~~eL~w~----L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpv 230 (427)
+| +.|++||+|+++ +++|. ++|.+++++|.|+.+|+++. . +..++|+|+||+||||||++|++|+|||
T Consensus 98 ~d---~~~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~ 169 (314)
T 2zp1_A 98 LK---AKYVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVG 169 (314)
T ss_dssp CC---CEEEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CC---eEEEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEc
Confidence 98 789999999876 45555 99999999999999998642 2 2349999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 014300 231 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 310 (427)
Q Consensus 231 G~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe 310 (427)
|.||++|++|+|++++ ++|..+.. ++||||+ |++||||| + +|+|+|+|+|+
T Consensus 170 G~DQ~~~~~l~R~i~~----------------------~~~~~~~~---~~l~~l~-G~~KMSKS-~--~~~I~L~d~~~ 220 (314)
T 2zp1_A 170 GMEQRKIHMLARELLP----------------------KKVVCIHN---PVLTGLD-GEGKMSSS-K--GNFIAVDDSPE 220 (314)
T ss_dssp EGGGHHHHHHHHHHSS----------------------SCCEEEEE---CCCBCTT-SSSBCCTT-T--TCSCBTTCCHH
T ss_pred ChhHHHHHHHHHHhcC----------------------CCcEEeec---cccccCC-cccccCCC-C--cceecCCCCHH
Confidence 9999999999999854 23555544 5999995 77899999 4 58999999999
Q ss_pred HHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhC-----------------CCCHHHHHHHHh--cCChhhHHHHH
Q 014300 311 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-----------------GKTKGEVAEECQ--NMNWGTFKPLL 371 (427)
Q Consensus 311 ~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t-----------------~~~~eel~~~y~--~l~~gdlK~~L 371 (427)
+|++|||+|+||+. .++.|+++.||+++. +.+++||+++|. +++|++||+.|
T Consensus 221 ~i~~KI~~a~td~~---------~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~l 291 (314)
T 2zp1_A 221 EIRAKIKKAYCPAG---------VVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAV 291 (314)
T ss_dssp HHHHHHHHSCCCTT---------CCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCC---------CCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999874 456799999999873 458999999997 47999999999
Q ss_pred HHHHHHhhhHHHHHHHH
Q 014300 372 TDALIEHLHPIQVRYEE 388 (427)
Q Consensus 372 ae~I~~~L~pirer~~~ 388 (427)
|+.|+++|+|+|++|+.
T Consensus 292 a~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 292 AEELIKILEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999984
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.9e-61 Score=499.85 Aligned_cols=281 Identities=19% Similarity=0.281 Sum_probs=241.6
Q ss_pred CCCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--cceEEEEEeccceeccC-CCHHHHHHHHHHHHHHH
Q 014300 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIY 150 (427)
Q Consensus 76 ~~~~~i~sGi~PT-G~lHLGnylgai-k~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~l~~~~~~~~a~~ 150 (427)
.+++++|+||+|| |.+|||||++++ .+| | |+ ++.++|+|+|+||++++ .+++++++++++++++|
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--l--------Q~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~ 175 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--L--------QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDI 175 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--H--------HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHH
Confidence 3478999999999 899999999866 233 4 75 78899999999999975 68999999999999999
Q ss_pred HHcCccCCceEEEEcCCcch----hhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhc---
Q 014300 151 LACGIDNSKASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL--- 222 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~~----~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll--- 222 (427)
+|+|+||+|++||.||+|++ +.++.| +++||++++++.++.+ .+++++|+|+||+||||||++
T Consensus 176 lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~ 246 (437)
T 1r6u_A 176 IACGFDINKTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSF 246 (437)
T ss_dssp HTTTCCGGGEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGC
T ss_pred HHhCCCccceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhc
Confidence 99999999999999999985 455444 5778888888877765 467899999999999999999
Q ss_pred --------cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014300 223 --------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 294 (427)
Q Consensus 223 --------~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 294 (427)
|++|+||||.||++|++++||+|+||| |++|..+.. ++||||+++++||||
T Consensus 247 d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSK 305 (437)
T 1r6u_A 247 PQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSA 305 (437)
T ss_dssp HHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCT
T ss_pred chhcccccCCceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCC
Confidence 788999999999999999999999988 567887664 499999543479999
Q ss_pred CCCCCCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhH
Q 014300 295 SAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTF 367 (427)
Q Consensus 295 S~p~~~s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~~~--~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdl 367 (427)
|.+ +++|+|+|+|++|++||++ |+||+..++++++ +++|++++++.|+.+|+ ++++++|+++|. +++++++
T Consensus 306 S~~--nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~ 383 (437)
T 1r6u_A 306 SDP--NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 383 (437)
T ss_dssp TSS--SSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTH
T ss_pred CCC--CCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHH
Confidence 987 3699999999999999999 9999976555433 38899999999999986 346788999997 3899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHH
Q 014300 368 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVL 400 (427)
Q Consensus 368 K~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL 400 (427)
|+.||+.|+++|+|+|+||+++.++ .+++.+
T Consensus 384 K~~LAe~i~~~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 384 KKALIEVLQPLIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 9999999999999999999998753 355543
No 26
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-60 Score=488.57 Aligned_cols=279 Identities=23% Similarity=0.230 Sum_probs=229.1
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceecc-CC-CHHHHHHHH----HHHHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIY 150 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~-~~~~l~~~~----~~~~a~~ 150 (427)
++++||+||+|||.+|||||+++|+.|..+ |.+++++|+|+||||+|+ +. +.+.++.++ ..+.+.|
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~--------q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l 109 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFL--------KAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAIL 109 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHH--------HTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHH--------HcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999988 889999999999999997 43 455566554 3455578
Q ss_pred HHcCccCCceEEEEcCCc---chhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccce
Q 014300 151 LACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 227 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v---~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adl 227 (427)
+|||+||+++.||+||+| ++|.++.|.++|.++++++.|+.+.+ .+ . .++.++|+|+||+||||||++|++|+
T Consensus 110 ~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~ 185 (394)
T 2dlc_X 110 RSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDC 185 (394)
T ss_dssp HHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSE
T ss_pred HHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCE
Confidence 999999999999999999 56888999999999999999986532 12 1 25679999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014300 228 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 307 (427)
Q Consensus 228 vpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 307 (427)
||||.||++|++++|+++++|| ++.|..++.+ +||+| +|++|||||++ +++|+|+|
T Consensus 186 v~~G~DQ~~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-~~G~KMSKS~~--ns~I~L~D 241 (394)
T 2dlc_X 186 QFGGVDQRKIFVLAEENLPSLG------------------YKKRAHLMNP---MVPGL-AQGGKMSASDP--NSKIDLLE 241 (394)
T ss_dssp EEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCC-C------------CCSCBTTC
T ss_pred EecCccHHHHHHHHHHHHHHcC------------------CCCCEEEecc---cccCC-CCCCcCCCCCC--CCEEeccC
Confidence 9999999999999999999987 4568888765 99999 43479999997 36799999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHh----------------------------hCCCCHHHHHHHH
Q 014300 308 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL----------------------------ISGKTKGEVAEEC 359 (427)
Q Consensus 308 spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~----------------------------~t~~~~eel~~~y 359 (427)
+|++|++|||+|+||+. +++.|+++.|+++ ++++++++|+++|
T Consensus 242 ~p~~i~kKI~ka~Td~~---------~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~ 312 (394)
T 2dlc_X 242 EPKQVKKKINSAFCSPG---------NVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAF 312 (394)
T ss_dssp CHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCC---------CCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHH
Confidence 99999999999999874 3455667666543 3457999999999
Q ss_pred hc--CChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHH
Q 014300 360 QN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 404 (427)
Q Consensus 360 ~~--l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL~~Ga 404 (427)
.+ ++|++||+.||+.|+++|+|+|++|+ ++++ ++++++.|.
T Consensus 313 ~~g~~~~~~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~~ 355 (394)
T 2dlc_X 313 KEEKLSPPDLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKGY 355 (394)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhccC
Confidence 73 89999999999999999999999988 3444 777776553
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=2.2e-60 Score=484.50 Aligned_cols=265 Identities=23% Similarity=0.228 Sum_probs=221.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceecc-CCCHHHHHHHH---HH--HHHHH
Q 014300 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKAT---RE--TAAIY 150 (427)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~l~~~~---~~--~~a~~ 150 (427)
.+++||+||+|||.+|||||+|+|+.|..+ |.+++++|+|+||||+|+ +.+++++.++. .+ +.+.|
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~--------q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~l 105 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFL--------KAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAML 105 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHH--------HTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHH--------HCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999998877 889999999999999997 56666664444 22 33457
Q ss_pred HHcCccCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccce
Q 014300 151 LACGIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 227 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~v~---~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adl 227 (427)
+|||+||+|+.||+||+|+ ++.++.|.++|.+++++++|+.+. .. .. .+++++|+|+||+||||||++|++|+
T Consensus 106 la~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~--v~-~~-~~~~~~g~~~YP~lQaaDil~~~a~~ 181 (372)
T 1n3l_A 106 ESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAE--VV-KQ-VEHPLLSGLLYPGLQALDEEYLKVDA 181 (372)
T ss_dssp HHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTT--TS-CC-CSSCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhh--hh-cc-cCCCcceeeecchHhhccHHHhcCCE
Confidence 9999999999999999996 788889999999999999986331 01 11 25689999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014300 228 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 307 (427)
Q Consensus 228 vpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 307 (427)
||||.||++|++++|||+++|+ +.+|..++.+ +|||| +| +|||||+++ ++|+|+|
T Consensus 182 v~~G~DQ~~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-dG-~KMSKS~~n--s~I~L~d 236 (372)
T 1n3l_A 182 QFGGIDQRKIFTFAEKYLPALG------------------YSKRVHLMNP---MVPGL-TG-SKMSSSEEE--SKIDLLD 236 (372)
T ss_dssp EEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCS-SC-C-------C--CSCBTTC
T ss_pred EEcChhHHHHHHHHHHHHHHcC------------------CCCCEEEecC---ccCCC-Cc-ccccCCCCC--CeEeccC
Confidence 9999999999999999999985 4578888754 99999 56 699999973 7999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHh--------h------------CCCCHHHHHHHHhc--CChh
Q 014300 308 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQN--MNWG 365 (427)
Q Consensus 308 spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~--------~------------t~~~~eel~~~y~~--l~~g 365 (427)
+|++|++|||+|+||+. +++.++++.|+++ | +++++++++++|.+ ++|+
T Consensus 237 ~p~~i~kKi~~A~td~~---------~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~ 307 (372)
T 1n3l_A 237 RKEDVKKKLKKAFCEPG---------NVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPG 307 (372)
T ss_dssp CHHHHHHHHHTCCCCTT---------CCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHH
T ss_pred CHHHHHHHHHHccCCCC---------CCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999874 3456788888875 3 34689999999974 8999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHH
Q 014300 366 TFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 366 dlK~~Lae~I~~~L~pirer~~ 387 (427)
+||+.||+.|+++|+|+|++|+
T Consensus 308 ~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 308 DLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999997
No 28
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1e-60 Score=500.05 Aligned_cols=280 Identities=19% Similarity=0.282 Sum_probs=239.7
Q ss_pred CCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--cceEEEEEeccceeccC-CCHHHHHHHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYL 151 (427)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylgai-k~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~l~~~~~~~~a~~l 151 (427)
+++++|+||+|| |.||||||+|++ .+| | |+ ++.++|+|+|+||++++ .+++++++++++++++|+
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--l--------Q~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~l 223 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--L--------QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDII 223 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--H--------HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999 899999999977 444 4 64 78999999999999974 689999999999999999
Q ss_pred HcCccCCceEEEEcCCcch----hhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCcccccchhhHHHHhhhhc----
Q 014300 152 ACGIDNSKASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL---- 222 (427)
Q Consensus 152 A~GiDp~k~~if~QS~v~~----~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIll---- 222 (427)
|+|+||+|++||.||+|++ +.++.| +|+|+++++++.++.+ .+++++|+|+||+||||||++
T Consensus 224 A~GlDp~k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d 294 (477)
T 1r6t_A 224 ACGFDINKTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFP 294 (477)
T ss_dssp TTCCCTTSEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCH
T ss_pred HhCCCCCceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccc
Confidence 9999999999999999985 555554 6677778887776654 467899999999999999999
Q ss_pred -------cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014300 223 -------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 295 (427)
Q Consensus 223 -------~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS 295 (427)
|++|+||||.||++|++++||+|+||| |++|..++. ++||||+++++|||||
T Consensus 295 ~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS 353 (477)
T 1r6t_A 295 QIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSAS 353 (477)
T ss_dssp HHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTT
T ss_pred hhhccccCCceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCC
Confidence 688999999999999999999999987 567887665 4999995434799999
Q ss_pred CCCCCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCCcchHHHHHHhhC--CCCHHHHHHHHh--cCChhhHH
Q 014300 296 APSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFK 368 (427)
Q Consensus 296 ~p~~~s~I~L~Dspe~I~kKI~k-A~Td~~~~~~~~~--~~rpev~nll~i~~~~t--~~~~eel~~~y~--~l~~gdlK 368 (427)
.++ ++|+|+|+|++|++||++ |+||+..+.++++ +++|++++++.|+.+|+ ++++++|+++|. +++++++|
T Consensus 354 ~~n--saI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K 431 (477)
T 1r6t_A 354 DPN--SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 431 (477)
T ss_dssp STT--CCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCC--CceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 873 699999999999999999 9999976554433 38899999999999986 346788999997 38999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHH
Q 014300 369 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVL 400 (427)
Q Consensus 369 ~~Lae~I~~~L~pirer~~~~~~d~~~l~~IL 400 (427)
+.||+.|+++|+|||+||+++.++ .|++.+
T Consensus 432 ~~Lae~i~~~l~pirer~~~~~~~--~v~~~~ 461 (477)
T 1r6t_A 432 KALIEVLQPLIAEHQARRKEVTDE--IVKEFM 461 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 999999999999999999998753 354443
No 29
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=3.9e-60 Score=490.21 Aligned_cols=287 Identities=19% Similarity=0.226 Sum_probs=241.4
Q ss_pred CCCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-C---------CCHHHHHHHH
Q 014300 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKAT 143 (427)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~l~~~~ 143 (427)
..++++|+||+|||. +|||||+ ++++|+.| |+ |++++|+|||+||+++ + .+++.+++++
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~l--------Q~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~ 105 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAV-VLRKMRQF--------QELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENA 105 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHH-HHHHHHHH--------HHTTCEEEEEECCCC---------------------HHHH
T ss_pred CCCcEEEEcccCCCCCCchhhHH-HHHHHHHH--------HHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHH
Confidence 347899999999995 9999999 78899999 77 6999999999999997 3 1367788777
Q ss_pred HHHHHHHHHcCcc--CCceEEEEcCCcchhhHHHHHH--hccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhh
Q 014300 144 RETAAIYLACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 219 (427)
Q Consensus 144 ~~~~a~~lA~GiD--p~k~~if~QS~v~~~~eL~w~L--~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAAD 219 (427)
..+.+.+. +|+| |+|++||+||+|+++..+.|++ ++.++++++.+..+||++... .+++++|+|+||+|||||
T Consensus 106 ~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaD 182 (432)
T 1h3f_A 106 KTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYD 182 (432)
T ss_dssp HHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHH
T ss_pred HHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhh
Confidence 66665543 8999 9999999999999887777776 899999999988899976543 267899999999999999
Q ss_pred hhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 220 ILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 220 Ill~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
|++|++|+||||.||++|++++||+|+|||. ..|..+.. ++||+| ||++|||||.+
T Consensus 183 il~l~~~l~~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~---pll~gl-dG~~KMSKS~~-- 238 (432)
T 1h3f_A 183 SVAIRADVEMGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLM---PLLVGL-DGREKMSKSLD-- 238 (432)
T ss_dssp HHHHTCSEEEEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEE---CCCBCT-TSSSBCCGGGT--
T ss_pred hhhcCccEEEechHHHHHHHHHHHHHHHhCC------------------CCceEeec---ccccCC-CCccccCcCCC--
Confidence 9999999999999999999999999999872 12333433 599999 68779999984
Q ss_pred CceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhh
Q 014300 300 QSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 379 (427)
Q Consensus 300 ~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L 379 (427)
|+|+|+|+|++|++||+++.+ ++++.||++|++.+.+|+++.+.+ +|+++|+.||+.|++++
T Consensus 239 -n~I~L~dsp~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l 300 (432)
T 1h3f_A 239 -NYIGLTEPPEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAY 300 (432)
T ss_dssp -CCCBTTSCHHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred -CeeCCCCCHHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHH
Confidence 699999999999999999855 478999999999999999999888 99999999999999999
Q ss_pred h----HHHHHHHHHhcCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014300 380 H----PIQVRYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 418 (427)
Q Consensus 380 ~----pirer~~~~~~d~~~l~~IL~~----GaekAr~iA~~tl~~V 418 (427)
+ |||+||+++.+ ++||++||++ |.+.|++ |++.-+.+
T Consensus 301 ~~~~~pirerr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 301 ALPQIPPRIDRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp HSSSCCSCCSHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred hcccchHHHHHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 9 99999999999 9999999999 9888764 44444444
No 30
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=7.4e-59 Score=465.07 Aligned_cols=262 Identities=14% Similarity=0.149 Sum_probs=225.2
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHH-
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT- 143 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~- 143 (427)
++++||+||+|||. +|||||+ ++++|+.+ |+ +++++|+|||+||+++ +. +++++++++
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l-~l~~~~~l--------Q~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~ 102 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLV-PLLCLKRF--------QQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD 102 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHH-HHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHH--------HHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHH
Confidence 36899999999999 9999999 68899999 77 6999999999999997 43 899999999
Q ss_pred --HHHHHHHHHcCccCCceEEEEcCCcch-hhHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHh
Q 014300 144 --RETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 218 (427)
Q Consensus 144 --~~~~a~~lA~GiDp~k~~if~QS~v~~-~~eL~w~--L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 218 (427)
+++++.|+|||+||+|++||.||+|+. +.++.|+ ++|.++++++.|+.++|++.... .+++++|+|+||+||||
T Consensus 103 ~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaa 181 (322)
T 2yxn_A 103 KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGY 181 (322)
T ss_dssp HHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHH
Confidence 888899999999999999999999975 5888888 89999999999999999765421 25689999999999999
Q ss_pred hhhcc----ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014300 219 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 294 (427)
Q Consensus 219 DIll~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 294 (427)
||++| ++|+++||.||+||++++||||+|||+ + .|..+.. ++|||+ || +||||
T Consensus 182 Dil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~gl-dG-~KMSK 238 (322)
T 2yxn_A 182 DFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----------------QVFGLTV---PLITKA-DG-TKFGK 238 (322)
T ss_dssp HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHC--C----------------CCEEEEC---CCCBCT-TS-CBTTE
T ss_pred HHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCC--C----------------Cceeecc---CccCCC-Cc-ccccC
Confidence 99999 999999999999999999999999994 2 2334433 499999 67 69999
Q ss_pred CCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChhhHHHH
Q 014300 295 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 370 (427)
Q Consensus 295 S~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~gdlK~~ 370 (427)
|++ |+|+|+| +|+++++||+++. ++++.+++.+|.+++++++++++++|. +.+++++|+.
T Consensus 239 S~~---n~I~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~ 302 (322)
T 2yxn_A 239 TEG---GAVWLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYV 302 (322)
T ss_dssp ETT---EECBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHH
T ss_pred CCC---CeeeccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 985 6999999 9999999999862 123444445444445668889999997 5699999999
Q ss_pred HHHHHHHhhhHHHHHHH
Q 014300 371 LTDALIEHLHPIQVRYE 387 (427)
Q Consensus 371 Lae~I~~~L~pirer~~ 387 (427)
||+.|+++|+|.++..+
T Consensus 303 La~~i~~~l~~~~~~~~ 319 (322)
T 2yxn_A 303 LAEQVTRLVHGEEGLQA 319 (322)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHH
Confidence 99999999999998765
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=6.4e-56 Score=449.08 Aligned_cols=260 Identities=17% Similarity=0.139 Sum_probs=209.9
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 144 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~ 144 (427)
++++||+||+|||. +||||+ +++++|+.| |+ +++++|+|||+||+|+ +. ++++++++++
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl-~~l~~~~~l--------Q~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~ 115 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHL-LALLGLFHL--------QRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANAR 115 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHH-HHHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHH-HHHHHHHHH--------HHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHH
Confidence 45899999999997 999995 588999999 77 6999999999999997 32 6999999999
Q ss_pred HHHHHHHHcCccCCc-----------eEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHHHhhCCCCcccccc
Q 014300 145 ETAAIYLACGIDNSK-----------ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALL 210 (427)
Q Consensus 145 ~~~a~~lA~GiDp~k-----------~~if~QS~v~~~~eL~w~L~---~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l 210 (427)
+++++|+|+ +||++ ++||+||+|..+.++.|++. ..+++++|.++.+||++... .+++++|+|
T Consensus 116 ~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f 192 (356)
T 2pid_A 116 ALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEF 192 (356)
T ss_dssp HHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHH
T ss_pred HHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHH
Confidence 999999999 99855 99999999988777777765 48899999999999865432 257899999
Q ss_pred hhhHHHHhhhhcc----ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCC
Q 014300 211 TYPVLMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 286 (427)
Q Consensus 211 ~YPvLQAADIll~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~ 286 (427)
+||+||||||++| ++|+||||.||+||++++||||+|||+ + .|..+.. ++||+|
T Consensus 193 ~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l- 250 (356)
T 2pid_A 193 FYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST- 250 (356)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC---
T ss_pred HHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-
Confidence 9999999999999 999999999999999999999999994 2 2333332 489999
Q ss_pred CCCCccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cC
Q 014300 287 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NM 362 (427)
Q Consensus 287 dg~~KMSKS~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l 362 (427)
|| +|||||. +|+|+|+| +|++|++||+++ +| +++.+++.+|.+++++++++++++|. +.
T Consensus 251 dG-~KMSKS~---~naI~L~d~~tsp~~i~~ki~~~-~D------------~~v~~~l~~~t~~~~~~i~~l~~~~~~g~ 313 (356)
T 2pid_A 251 TG-AKLGKSA---GNAVWLNRDKTSPFELYQFFVRQ-PD------------DSVERYLKLFTFLPLPEIDHIMQLHVKEP 313 (356)
T ss_dssp ---------------CCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred Cc-ccccCCC---CCeeeccCCCCCHHHHHHHHHcC-Cc------------hhHHHHHHHHHcCCchHHHHHHHHHhcCC
Confidence 67 6999995 58999999 999999999995 22 34566666666666678889999997 47
Q ss_pred ChhhHHHHHHHHHHHhhhHHHHHHH
Q 014300 363 NWGTFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 363 ~~gdlK~~Lae~I~~~L~pirer~~ 387 (427)
+++++|+.||+.|+++|+..++..+
T Consensus 314 ~~~~~K~~La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 314 ERRGPQKRLAAEVTKLVHGREGLDS 338 (356)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 8999999999999999999876544
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-55 Score=452.69 Aligned_cols=261 Identities=14% Similarity=0.135 Sum_probs=223.8
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-C--------CCHHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRE 145 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~--------~~~~~l~~~~~~ 145 (427)
.++++|+||+|||. +||||+ +++++|+.+ |+ +++++|+|||+||+++ | .+++++++|+.+
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhl-v~l~~l~~l--------Q~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~ 101 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHL-VPLLTLRRF--------QRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTER 101 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGH-HHHHHHHHH--------HHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHH-HHHHHHHHH--------HHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHH
Confidence 46899999999996 999995 588899999 76 6999999999999997 5 678999999976
Q ss_pred H---HHHHHHcCccCCceEEEEcCCcch-hhHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhh
Q 014300 146 T---AAIYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 219 (427)
Q Consensus 146 ~---~a~~lA~GiDp~k~~if~QS~v~~-~~eL~w~--L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAAD 219 (427)
+ ++.|+|+|+||+|++||+||+|++ +.++.|+ +++.+++++|.|+.+||++. . .+++++|+|+||+|||||
T Consensus 102 ~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaD 178 (432)
T 2jan_A 102 IRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQAND 178 (432)
T ss_dssp HHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHH
Confidence 5 778999999999999999999986 5688999 99999999999999999765 2 257899999999999999
Q ss_pred hhcc----ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014300 220 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 295 (427)
Q Consensus 220 Ill~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS 295 (427)
|++| ++|+||||.||++|++++||+|+|||+ ..|..+.. ++||++ || +|||||
T Consensus 179 il~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~---plL~~l-dG-~KMSKS 235 (432)
T 2jan_A 179 YVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTV---PLVTAA-DG-TKFGKS 235 (432)
T ss_dssp HHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTBC
T ss_pred HHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccc---ccccCC-Cc-CcCCCC
Confidence 9999 999999999999999999999999983 12333433 499999 67 699999
Q ss_pred CCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChhhHHHHH
Q 014300 296 APSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLL 371 (427)
Q Consensus 296 ~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~gdlK~~L 371 (427)
.++ ++|+|+| +|++|++||+++ +| +++.+++.+|.+++.+++++++++|. +.+++++|+.|
T Consensus 236 ~~n--saI~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~L 300 (432)
T 2jan_A 236 TGG--GSLWLDPQMTSPYAWYQYFVNT-AD------------ADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRL 300 (432)
T ss_dssp SSS--CBCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCC--CeEEccCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHH
Confidence 863 6999999 999999999985 22 34555666655556678888999997 56899999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 014300 372 TDALIEHLHPIQVRYE 387 (427)
Q Consensus 372 ae~I~~~L~pirer~~ 387 (427)
|+.|+++++..++..+
T Consensus 301 A~~v~~~~hg~~~~~~ 316 (432)
T 2jan_A 301 ASELTVLVHGEAATAA 316 (432)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHH
Confidence 9999999999876544
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.2e-53 Score=437.13 Aligned_cols=274 Identities=18% Similarity=0.151 Sum_probs=225.2
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 144 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~ 144 (427)
.++++|+||+|||. +|||||+ ++++|+.| |+ +++++|+|||+||+++ +. +++.+++|+.
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv-~l~~l~~l--------Q~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~ 133 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLL-PLMPLFWM--------YLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMT 133 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHH-HHHHHHHH--------HHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHH-HHHHHHHH--------HHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHH
Confidence 36799999999999 9999999 68889999 77 7999999999999997 42 7788999999
Q ss_pred HHHHHHHHcC-----------cc---CCceEEEEcCCc-chhhHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCccc
Q 014300 145 ETAAIYLACG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGV 207 (427)
Q Consensus 145 ~~~a~~lA~G-----------iD---p~k~~if~QS~v-~~~~eL~w~--L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~ 207 (427)
.+.+.++|+| +| |++++||.||+| +++.++.|+ +++.++++++.+..+||++... .+++++
T Consensus 134 ~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~ 211 (392)
T 1y42_X 134 KIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSF 211 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCH
T ss_pred HHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCccc
Confidence 9988888876 45 789999999997 678899999 8999999998877788854321 357899
Q ss_pred ccchhhHHHHhhhhcc----ccceEecccchHHHHHHHHHHHHHHhhhhcC---c--cccccCCCCCccccCCceecCCC
Q 014300 208 ALLTYPVLMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG---R--KWKKLGGRGGAIFKVPEPLIPPA 278 (427)
Q Consensus 208 g~l~YPvLQAADIll~----~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~---~--~~~k~~~~~~~~f~~P~~l~~~~ 278 (427)
|+|+||+||||||+++ ++|+||||.||+||++++||||+|||+.|+. . ..++++ +..|..+..
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~-- 283 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV-- 283 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc--
Confidence 9999999999999977 5999999999999999999999999987731 0 012222 344555543
Q ss_pred CcccccCCCCCCccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHH
Q 014300 279 GARVMSLTDGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEV 355 (427)
Q Consensus 279 ~~~l~sL~dg~~KMSKS~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel 355 (427)
++||+| || +|||||. +|+|+|+| +|+++++||+++ + ++++.+++.+|.+++.+++++|
T Consensus 284 -pll~~l-dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~ft~l~~~ei~~l 344 (392)
T 1y42_X 284 -PLLTDS-SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRR-S------------DQEVENLLKLFTFMPISEITKT 344 (392)
T ss_dssp -CCCBCT-TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTC-C------------TTTHHHHHHHHCCCCHHHHHHH
T ss_pred -ccCcCC-ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcC-C------------chhHHHHHHHHHhCChhHHHHH
Confidence 599999 67 6999996 47999999 999999999985 2 2356667777666666788889
Q ss_pred HHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHHH
Q 014300 356 AEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEE 388 (427)
Q Consensus 356 ~~~y~-~l~~gdlK~~Lae~I~~~L~pirer~~~ 388 (427)
+++|. +.+++++|+.||+.|++++++.++..+.
T Consensus 345 ~~~~~~g~~~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 345 MEEHIKDPSKRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99997 4589999999999999999999876553
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.3e-53 Score=439.70 Aligned_cols=261 Identities=14% Similarity=0.170 Sum_probs=213.8
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 144 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~ 144 (427)
+++++|+||+|||. +|||||+ ++++|+.+ |+ +++++|+|||+||+++ |. +++++++|+.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v-~l~~l~~l--------Q~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~ 99 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLA-TILTMRRF--------QQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSA 99 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHH-HHHHHHHH--------HHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHH
Confidence 46899999999999 9999999 68889999 76 7999999999999997 43 8999999997
Q ss_pred HH---HHHHHHcCccCCceEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHh
Q 014300 145 ET---AAIYLACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 218 (427)
Q Consensus 145 ~~---~a~~lA~GiDp~k~~if~QS~v~~~~eL~w~L~---~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 218 (427)
.+ ++.|+++|+||+|++||.||+|+.+..+.|+|. ..+++++|.+..+++ ++. .+++++|+|+||+||||
T Consensus 100 ~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k---~r~-~~~is~~ef~YPlLQaa 175 (419)
T 2ts1_A 100 RIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQ---SRI-ETGISFTEFSYMMLQAY 175 (419)
T ss_dssp HHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHH---TTT-TTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhh---hcc-CCCcchHHHHHHHHHHH
Confidence 66 667789999999999999999988666666665 556666555555554 333 36789999999999999
Q ss_pred hhhcc----ccceEecccchHHHHHHHHHHHHHH-hhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccc
Q 014300 219 DILLY----QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 293 (427)
Q Consensus 219 DIll~----~adlvpvG~DQ~qh~eLaRdiA~r~-n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMS 293 (427)
||++| ++|+||||.||++|++++||+|+|| |. + .|..+.. ++||++ || +|||
T Consensus 176 Dil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~--~----------------~~~~lt~---pll~~l-dG-~KMS 232 (419)
T 2ts1_A 176 DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGE--A----------------RAFGLTI---PLVTKA-DG-TKFG 232 (419)
T ss_dssp HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTT
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCC--C----------------Ceeeccc---ccccCC-Cc-cccc
Confidence 99999 9999999999999999999999999 73 1 2333333 489999 67 6999
Q ss_pred cCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChhhHHH
Q 014300 294 KSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKP 369 (427)
Q Consensus 294 KS~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~gdlK~ 369 (427)
||. +|+|+|+| +|+++++||+++ +| +++.+++.+|.+++.+++++++++|. +.+++++|+
T Consensus 233 KS~---~naI~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~ 296 (419)
T 2ts1_A 233 KTE---SGTIWLDKEKTSPYEFYQFWINT-DD------------RDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQK 296 (419)
T ss_dssp CCS---SCCCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHH
T ss_pred CCC---CCeEecCCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHH
Confidence 997 47999999 999999999985 21 23455555555555567888999997 569999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 014300 370 LLTDALIEHLHPIQVRYEEI 389 (427)
Q Consensus 370 ~Lae~I~~~L~pirer~~~~ 389 (427)
.||+.|+++++..++..+..
T Consensus 297 ~LA~~v~~~~hg~~~~~~a~ 316 (419)
T 2ts1_A 297 TLAEEVTKLVHGEEALRQAI 316 (419)
T ss_dssp HHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHH
Confidence 99999999999987665443
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=7.3e-53 Score=434.87 Aligned_cols=258 Identities=14% Similarity=0.140 Sum_probs=222.2
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceecc-CC---------CHHHHHHHHH
Q 014300 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 144 (427)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~l~~~~~ 144 (427)
+++++|+||+|||. +|||||+ ++++|+.+ |+ +++++|+|||+||+++ |. +++++++|+.
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v-~l~~~~~l--------Q~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~ 101 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLL-PFLTLRRF--------QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIE 101 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHH-HHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHH-HHHHHHHH--------HHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHH
Confidence 36899999999999 9999999 68889999 76 7999999999999997 43 8999999999
Q ss_pred HHHHHHHHcCccC---CceEEEEcCCcc-hhhHHHHHH--hccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHh
Q 014300 145 ETAAIYLACGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 218 (427)
Q Consensus 145 ~~~a~~lA~GiDp---~k~~if~QS~v~-~~~eL~w~L--~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 218 (427)
++.+.++++ ||| +|++||.||+|+ ++.++.|+. ++.+++++|.++.+||++. + +++++|+|+||+||||
T Consensus 102 ~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaa 176 (420)
T 1jil_A 102 GISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAI 176 (420)
T ss_dssp HHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHH
Confidence 999999998 888 999999999997 679999986 8999999999999998654 2 6789999999999999
Q ss_pred hhhcc----ccceEecccchHHHHHHHHHHHHHH-hhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccc
Q 014300 219 DILLY----QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 293 (427)
Q Consensus 219 DIll~----~adlvpvG~DQ~qh~eLaRdiA~r~-n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMS 293 (427)
||++| ++|+||||.||++|++++||+|+|| |. + .|..+.. ++||++ || +|||
T Consensus 177 D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~--~----------------~~~~l~~---pll~~l-dG-~KMS 233 (420)
T 1jil_A 177 DFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQ--T----------------DAYGLTI---PLVTKS-DG-KKFG 233 (420)
T ss_dssp HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCC--C----------------CCEEEEE---CCCBCT-TS-CBTT
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCC--C----------------CeeEeec---ccccCC-cc-cccc
Confidence 99999 9999999999999999999999999 73 1 2333333 489999 67 6999
Q ss_pred cCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHh-cCChhhHHH
Q 014300 294 KSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKP 369 (427)
Q Consensus 294 KS~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~l~~gdlK~ 369 (427)
||. +|+|+|+| +|++|++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+
T Consensus 234 KS~---~naI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~ 297 (420)
T 1jil_A 234 KSE---SGAVWLDAEKTSPYEFYQFWINQS-------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQK 297 (420)
T ss_dssp BCS---SSBCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHH
T ss_pred CCC---CCeEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHH
Confidence 997 47999999 9999999999852 123445555555555567888899997 568999999
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 014300 370 LLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 370 ~Lae~I~~~L~pirer~~ 387 (427)
.||+.|+++++..++..+
T Consensus 298 ~La~~v~~~~hg~~~~~~ 315 (420)
T 1jil_A 298 TLAEEVTKFIHGEDALND 315 (420)
T ss_dssp HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHH
Confidence 999999999999876554
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.5e-48 Score=423.42 Aligned_cols=265 Identities=14% Similarity=0.154 Sum_probs=217.6
Q ss_pred CCCCCCCCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc--cceEEEEEeccceecc-C--CCHHHHHHHHH
Q 014300 70 PVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITL-P--YDTQQLSKATR 144 (427)
Q Consensus 70 ~~~~~~~~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~-~--~~~~~l~~~~~ 144 (427)
+.+++...+..|+|+- |||.+||||+++.++.+.++ +|. +++++|+||||||+++ + .+++++++++.
T Consensus 374 ~~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~-------~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~ 445 (690)
T 3p0j_A 374 ALPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDF-------IAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQ 445 (690)
T ss_dssp --CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHH-------HHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHH
T ss_pred ccCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHH-------HHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHH
Confidence 3444555677888888 99999999999877644443 255 8999999999999998 3 58999999999
Q ss_pred HHHHHHHHcCccCCceEEEEcCCcchh-hHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhh
Q 014300 145 ETAAIYLACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 219 (427)
Q Consensus 145 ~~~a~~lA~GiDp~k~~if~QS~v~~~-~eL~w~----L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAAD 219 (427)
|++++|+|+|+|| +++|++||+|+.. .+++|. ++..++++|+.+.. +.+++++|+|+||+|||||
T Consensus 446 y~~~~~~alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaD 515 (690)
T 3p0j_A 446 VNCALLKAYGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVAT 515 (690)
T ss_dssp HHHHHHHHHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhh
Confidence 9999999999998 8999999998753 356775 56777777777642 2377899999999999999
Q ss_pred hhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 220 ILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 220 Ill~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
|+.+++|++|+|.||++|++||||+|++++ .|..++. .++|+|+++.++||||++
T Consensus 516 i~~l~aDi~~gG~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~---~~~P~L~gp~~~~~~~s~-- 570 (690)
T 3p0j_A 516 ALMLSVSHVISTSLDGHINAFAREYTKERI--------------------DCVQTLE---GRIPALHRPGAAPAVLGA-- 570 (690)
T ss_dssp HHHTTCSEEEECSTTTTTTHHHHHHTTTCS--------------------EEEECCC---CSSCCSSCCCC---------
T ss_pred hhccCCCEEecccccHHHHHHHHHHHHhcc--------------------Ccccccc---cccccCCCcccccCCCCC--
Confidence 999999999999999999999999998743 2444443 499999766666667765
Q ss_pred CceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhC-------------------CCCHHHHHHHHh
Q 014300 300 QSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-------------------GKTKGEVAEECQ 360 (427)
Q Consensus 300 ~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t-------------------~~~~eel~~~y~ 360 (427)
+|+|+|+|+|++|++|||+|||++ + .+.|++++|++++. .++++|++++|.
T Consensus 571 ~~~I~l~D~~~~i~~KI~kA~c~p---------~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~ 640 (690)
T 3p0j_A 571 DDVLYLDDNDMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCG 640 (690)
T ss_dssp CCSCBTTCCHHHHHHHHHHSCCCT---------T-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHH
T ss_pred CCeeeccCCHHHHHHHHHHhcCCC---------C-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHH
Confidence 699999999999999999999954 2 56799999999761 368999999997
Q ss_pred --cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014300 361 --NMNWGTFKPLLTDALIEHLHPIQVRYE 387 (427)
Q Consensus 361 --~l~~gdlK~~Lae~I~~~L~pirer~~ 387 (427)
.+||+|+|++|++.|+++|+|+|++|+
T Consensus 641 ~G~lhp~dlK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 641 SGALHPADLKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998
No 37
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.09 E-value=5.2e-10 Score=117.55 Aligned_cols=198 Identities=18% Similarity=0.188 Sum_probs=130.3
Q ss_pred cCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEE-EeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCce---
Q 014300 85 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFF-IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA--- 160 (427)
Q Consensus 85 i~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~-IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~--- 160 (427)
=.|||.+||||+.+++.+|... +.....|++ |-|. ++ .....+....+..++..+||+++.-
T Consensus 13 PsPTG~LHiG~~rtAL~n~l~A--------r~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~ 78 (498)
T 2ja2_A 13 PSPTGTPHVGLVRTALFNWAYA--------RHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEV 78 (498)
T ss_dssp CCSSSSCBHHHHHHHHHHHHHH--------HHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTT
T ss_pred cCCCCCccHHHHHHHHHHHHHH--------HHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCc
Confidence 3577999999999999999988 553445555 8886 21 2334466778888999999999974
Q ss_pred ----EEEEcCCcchhhHHH--------HHHhccccHHHHhhhh---------hHHHH---------HH--hhCCC-----
Q 014300 161 ----SVFVQSHVRAHVELM--------WLLSSATPIGWLNKMI---------QFKEK---------SH--KAGGE----- 203 (427)
Q Consensus 161 ----~if~QS~v~~~~eL~--------w~L~~~t~i~~l~R~~---------~~k~~---------~~--~~~~~----- 203 (427)
.+|+||+..+....+ ..+.|+++-.+|.++. .|... .. ..|..
T Consensus 79 gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~ 158 (498)
T 2ja2_A 79 GGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRL 158 (498)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEE
Confidence 589999976533211 1245999998886542 11110 00 01100
Q ss_pred -----Cc-----ccccchhhHHHHhhhhccccceEec-------------------ccchHHHHHHHHHHHHHHhhhhcC
Q 014300 204 -----NV-----GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGG 254 (427)
Q Consensus 204 -----~~-----~~g~l~YPvLQAADIll~~adlvpv-------------------G~DQ~qh~eLaRdiA~r~n~~yg~ 254 (427)
.+ -.|.+.++.-+.-|.+++++|-.|. |.|+..+...-+.+.+.||. +|
T Consensus 159 k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g- 236 (498)
T 2ja2_A 159 RMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IG- 236 (498)
T ss_dssp CCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TT-
T ss_pred ECCCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hc-
Confidence 00 1244666666666777766555555 99999999999999999876 63
Q ss_pred ccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 255 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 255 ~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
+| ++.|+..+.+ +|.+. +| +||||++. ...|.+ .|+.|.+-+..
T Consensus 237 -----~g------~~~P~~~h~p---lil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 237 -----VA------ERIPKFAHLP---TVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp -----SC------CCCCEEEEEC---CEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred -----CC------CCCCeEEEee---eeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHH
Confidence 11 5668766554 77776 56 69999974 233332 47777776655
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.07 E-value=8.8e-11 Score=116.06 Aligned_cols=176 Identities=16% Similarity=0.216 Sum_probs=104.2
Q ss_pred ecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014300 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 162 (427)
Q Consensus 84 Gi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~i 162 (427)
--.|||.+||||+.+++.+|... +. +...++-|.|.. + .....+....+..++.++||+++.. +
T Consensus 11 APsPtG~LHiG~~rtal~n~l~A--------r~~~g~~ilRieDtD----~--~R~~~~~~~~I~~dL~~LGl~~D~~-~ 75 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQA--------RARQGRWLVRIEDID----P--PREVPGAAETILRQLEHYGLHWDGD-V 75 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHH--------HHTTCEEEEEECCSC----G--GGSCTTHHHHHHHHHHHTTCCCSSC-C
T ss_pred CcCCCCCccHHHHHHHHHHHHHH--------HhcCCeEEEEEecCC----c--hhhHHHHHHHHHHHHHHcCCCCCCC-C
Confidence 34577999999999999999988 43 456666688742 1 1334567778889999999999874 7
Q ss_pred EEcCCcch-hhHHH-------HHHhccccHHHHhhhhh-HHHHHHh---hC---------------CCCcccccchhhH-
Q 014300 163 FVQSHVRA-HVELM-------WLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV- 214 (427)
Q Consensus 163 f~QS~v~~-~~eL~-------w~L~~~t~i~~l~R~~~-~k~~~~~---~~---------------~~~~~~g~l~YPv- 214 (427)
++||+..+ +.+.. +.+.|.++-.+|+++.. |....+. .| .+..-.|.+.++.
T Consensus 76 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~ 155 (298)
T 1nzj_A 76 LWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEK 155 (298)
T ss_dssp EEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHH
T ss_pred eeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcc
Confidence 99999653 22211 12458899888876411 1000000 00 0011234445554
Q ss_pred HHHhhhhccccceEec-------------------ccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceec
Q 014300 215 LMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLI 275 (427)
Q Consensus 215 LQAADIll~~adlvpv-------------------G~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~ 275 (427)
....|.+++++|-.|. |.|+..+...-..+.+.|+ ++.|...+
T Consensus 156 ~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H 217 (298)
T 1nzj_A 156 LAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIH 217 (298)
T ss_dssp HHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEE
T ss_pred cCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEE
Confidence 4666777777666666 9999877766666556543 45677665
Q ss_pred CCCCcccccCCCCCCccccCCC
Q 014300 276 PPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 276 ~~~~~~l~sL~dg~~KMSKS~p 297 (427)
.+ +|.+. +| +||||++.
T Consensus 218 ~p---ll~~~-~g-~KLSKR~g 234 (298)
T 1nzj_A 218 LP---LALNP-QG-AKLSKQNH 234 (298)
T ss_dssp EC---BCCC-------------
T ss_pred ee---eeECC-CC-CcccccCC
Confidence 54 77787 56 69999974
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.89 E-value=8.6e-10 Score=115.15 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=126.5
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceE----
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 161 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~---- 161 (427)
.|||.+||||+.+++.+|...+ +.+...++=|-|. ++ .....+....+..++..+||+++...
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar-------~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG 75 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWAR-------RNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGG 75 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHH-------HTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred CCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 5789999999999999999872 3355555667775 21 12233566688889999999999753
Q ss_pred ---EEEcCCcch-hhHHHH-------HHhccccHHHHhhhh-------------hHHHHHHh--hCC---------C--C
Q 014300 162 ---VFVQSHVRA-HVELMW-------LLSSATPIGWLNKMI-------------QFKEKSHK--AGG---------E--N 204 (427)
Q Consensus 162 ---if~QS~v~~-~~eL~w-------~L~~~t~i~~l~R~~-------------~~k~~~~~--~~~---------~--~ 204 (427)
.|+||+..+ +.+..- .+.|.++-.++.++. +..+..+. .|. . .
T Consensus 76 ~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~ 155 (468)
T 1j09_A 76 PHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGT 155 (468)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred CCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCc
Confidence 599999754 222111 145899888886532 11111111 110 0 0
Q ss_pred c-----ccccchhhHHHHhhhhccccceEec-------------------ccchHHHHHHHHHHHHHHhhhhcCcccccc
Q 014300 205 V-----GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKL 260 (427)
Q Consensus 205 ~-----~~g~l~YPvLQAADIll~~adlvpv-------------------G~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~ 260 (427)
+ -.|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.|+
T Consensus 156 ~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg----------- 224 (468)
T 1j09_A 156 TEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG----------- 224 (468)
T ss_dssp EEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT-----------
T ss_pred eEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC-----------
Confidence 1 1245777777778888887666666 9999999998888888764
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 261 ~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
++.|+..+. ++|.+. +| +||||++.+ . .|.+ .|+.|.+-+..
T Consensus 225 -------~~~p~~~h~---~li~~~-~g-~klSKR~g~--~--~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 -------WEAPRFYHM---PLLRNP-DK-TKISKRKSH--T--SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp -------CCCCEEEEE---CCCBCT-TS-CBCCTTTSC--C--BHHHHHHTTCCHHHHHHHHHH
T ss_pred -------CCCCeEEEe---eeeeCC-CC-Cccccccch--h--hHHHHHHCCCCHHHHHHHHHH
Confidence 455765543 367776 56 699999853 2 3332 57777777655
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.89 E-value=7.5e-10 Score=116.14 Aligned_cols=201 Identities=16% Similarity=0.168 Sum_probs=125.3
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
.++=-.=.|||.+||||+..++.+|...+ +.+.++++-|-|. ++ .....+....+..++..+||+++
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-------~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wD 92 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR-------KEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWD 92 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH-------HHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCS
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCC
Confidence 34444566789999999999999999871 3356666667776 21 13344566788889999999999
Q ss_pred ceE-------EEEcCCcchh-hHHHH-H------HhccccHHHHhhh--hhHHHH--HHhhCC--------C--Cc----
Q 014300 159 KAS-------VFVQSHVRAH-VELMW-L------LSSATPIGWLNKM--IQFKEK--SHKAGG--------E--NV---- 205 (427)
Q Consensus 159 k~~-------if~QS~v~~~-~eL~w-~------L~~~t~i~~l~R~--~~~k~~--~~~~~~--------~--~~---- 205 (427)
... .|+||+..+. .+..- + +.|.++-.+|.++ +.|... ....|. . .+
T Consensus 93 e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D 172 (488)
T 3afh_A 93 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFED 172 (488)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEE
T ss_pred cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEe
Confidence 753 6999997542 22111 1 3477776666542 111100 000110 0 00
Q ss_pred -ccccchhhHHHHhhhhcc-------------------ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCC
Q 014300 206 -GVALLTYPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 265 (427)
Q Consensus 206 -~~g~l~YPvLQAADIll~-------------------~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~ 265 (427)
-.|.+.++.-+.-|.+++ +.++|.-|.|+..+...-..+.+.|+
T Consensus 173 ~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG---------------- 236 (488)
T 3afh_A 173 LLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG---------------- 236 (488)
T ss_dssp TTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT----------------
T ss_pred ccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC----------------
Confidence 123344444333444444 45666669999999988888888765
Q ss_pred ccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhhc
Q 014300 266 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 319 (427)
Q Consensus 266 ~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~kA 319 (427)
++.|+..+.+ +|.+. +| +||||++.+ +.|.+ .|+.|.+-+...
T Consensus 237 --~~~P~f~H~p---li~~~-~g-~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 237 --WEAPVFMHIP---LILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp --CCCCEEEEEC---CEECT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHHT
T ss_pred --CCCCeEEEEe---eeeCC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 4567766554 77786 56 699999742 34432 578888777653
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.68 E-value=6.4e-07 Score=94.08 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=120.3
Q ss_pred ecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEEE
Q 014300 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 163 (427)
Q Consensus 84 Gi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~if 163 (427)
.=.|||.+||||...++.+|.... +.+.+.++=|-|.- + .....+....+..++..+||+++. ..|
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar-------~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde-~~~ 72 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR-------HRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDE-GPY 72 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-------hcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCC-CCc
Confidence 446789999999999999999871 33566666688763 1 122356777888999999999986 479
Q ss_pred EcCCcch-hhHHHHH-------HhccccHHHHhhhh----------hHHH---------HHH--hhCCC-----Ccc---
Q 014300 164 VQSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFKE---------KSH--KAGGE-----NVG--- 206 (427)
Q Consensus 164 ~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~----------~~k~---------~~~--~~~~~-----~~~--- 206 (427)
+||+..+ +.+..-. +.|+++-.+|..+. .|.. ... ..|.. .++
T Consensus 73 ~QS~r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 152 (492)
T 2cfo_A 73 FQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDR 152 (492)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTC
T ss_pred cccCCHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCC
Confidence 9999643 2222211 34888877775431 1110 000 01100 000
Q ss_pred --------cccchhhHHHH-hhhhc------------------------cccceEecccchHHHHHHHHHHHHHHhhhhc
Q 014300 207 --------VALLTYPVLMA-SDILL------------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYG 253 (427)
Q Consensus 207 --------~g~l~YPvLQA-ADIll------------------------~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg 253 (427)
-|.+.++.-.. .|.++ .+.|+|..|.|+..+-..-..|.+.|+
T Consensus 153 ~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg---- 228 (492)
T 2cfo_A 153 QIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG---- 228 (492)
T ss_dssp EEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT----
T ss_pred ceEEEecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC----
Confidence 12333333333 34444 455677799999998887777777653
Q ss_pred CccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 254 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 254 ~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
++.|...+.+ +|.+. +| +|||||+.+ ..|.+ .|+.|..-+..
T Consensus 229 --------------~~~P~~~H~p---lil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 --------------ATPPNFAHTP---LILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp --------------CCCCEEEEEC---CEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred --------------CCCceEEEee---eEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 4567666554 77787 56 699999843 23321 57778777765
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.67 E-value=1.1e-09 Score=117.48 Aligned_cols=200 Identities=16% Similarity=0.159 Sum_probs=121.5
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
.++=-.=.|||.+||||+.+++.+|...+ +.+.++++-|.|. ++. ....+....+..++..+||+++
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar-------~~~G~~ilRieDt----D~~--r~~~~~~~~I~~dL~wlGl~~D 196 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFAR-------KEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWD 196 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-------HHTCEEEECBCCC----CSS--SCCHHHHHHHHHHHHHTTCCCS
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHH-------hcCCcEEEEecCc----Chh--hccHHHHHHHHHHHHHcCCCCC
Confidence 44444577889999999999999999871 2356677778883 322 3344566688889999999999
Q ss_pred ceE-------EEEcCCcchh-hHHHH-H------HhccccHHHHhhh--hhHHHH--HHhhC---------C-C-----C
Q 014300 159 KAS-------VFVQSHVRAH-VELMW-L------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-E-----N 204 (427)
Q Consensus 159 k~~-------if~QS~v~~~-~eL~w-~------L~~~t~i~~l~R~--~~~k~~--~~~~~---------~-~-----~ 204 (427)
... .|+||+..+. .+..- + +.|.++-.+|.+. +.|... ....| . . .
T Consensus 197 ~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D 276 (592)
T 3al0_C 197 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFED 276 (592)
T ss_dssp BBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECC
T ss_pred CCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeee
Confidence 753 6899997542 22111 1 3477766555442 011100 00001 0 0 0
Q ss_pred cccccchhhHHHHhhhhcc-------------------ccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCC
Q 014300 205 VGVALLTYPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 265 (427)
Q Consensus 205 ~~~g~l~YPvLQAADIll~-------------------~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~ 265 (427)
.-.|.+.+|.-+.-|.+++ +.++|.-|.|+..|...-..+.+.|+
T Consensus 277 ~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg---------------- 340 (592)
T 3al0_C 277 LLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG---------------- 340 (592)
T ss_dssp TTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT----------------
T ss_pred cccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC----------------
Confidence 0123333333333344443 45666669999999988887766643
Q ss_pred ccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 266 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 266 ~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
++.|+..+. ++|.+. +| +||||++.+ +.|.+ .|+.|.+-+..
T Consensus 341 --~~~P~~~hl---pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 341 --WEAPVFMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp --CCCCBCCEE---CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTT
T ss_pred --CCCCeEEEe---eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 455765444 377776 56 699999742 33432 58888887765
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.13 E-value=2.4e-05 Score=81.90 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=113.9
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
.+....=.|||.+||||..+++-+|.... +.+...++=|-|.- ......+....+..++..+|++++
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar-------~~~G~~iLRieDtD------~~r~~~~~~~~I~~~l~wlGl~~d 80 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFAR-------KEKGKFILRIEDTD------LERSEREYEEKLMESLRWLGLLWD 80 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHH-------HHTCEEEECBCCSS------CCSGGGHHHHHHHHHHHHHTCCCS
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHH-------HcCCeEEEEEecCC------ccccHHHHHHHHHHHHHHcCCCCC
Confidence 46677888999999999999999998761 22334443344432 112334566677888889999988
Q ss_pred ce-------EEEEcCCcch-hhHHHHH-------HhccccHHHHhhhh----------hHH----HH-------HH--hh
Q 014300 159 KA-------SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFK----EK-------SH--KA 200 (427)
Q Consensus 159 k~-------~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~----------~~k----~~-------~~--~~ 200 (427)
.. -.|+||+-.+ +.+..-. +.|.++-.++..+. .|. +. .+ ..
T Consensus 81 e~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~ 160 (481)
T 2o5r_A 81 EGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEK 160 (481)
T ss_dssp BBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHT
T ss_pred CCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhc
Confidence 63 2578998432 2221111 23554443332210 000 00 00 00
Q ss_pred CC-------------------------CCcccccch------hhHHHHhhhh---ccccceEecccchHHHHHHHHHHHH
Q 014300 201 GG-------------------------ENVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAE 246 (427)
Q Consensus 201 ~~-------------------------~~~~~g~l~------YPvLQAADIl---l~~adlvpvG~DQ~qh~eLaRdiA~ 246 (427)
|. ++..+|-++ ||..+-|+++ +.+.|+|..|.||..|...-..+.+
T Consensus 161 G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 240 (481)
T 2o5r_A 161 GLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYE 240 (481)
T ss_dssp TCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHH
T ss_pred CCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHH
Confidence 10 001111111 4444444443 3578999999999999988777777
Q ss_pred HHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014300 247 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 318 (427)
Q Consensus 247 r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 318 (427)
.++ ++.|...+.+ ++.+. +| +||||++.+ ..|.| .|+.|.+-+..
T Consensus 241 aLG------------------~~~p~~~H~p---lil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 241 AFE------------------KAPPVFAHVS---TILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp HTT------------------CCCCEEEEEC---CEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHT
T ss_pred HcC------------------CCCCeEEEEe---eEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 654 4567655543 56665 56 599999743 23332 46666666554
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.90 E-value=0.00021 Score=74.93 Aligned_cols=97 Identities=21% Similarity=0.174 Sum_probs=59.2
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCcc
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID 156 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiD 156 (427)
+.++=-.=.|||.+||||+..++.+|+.. +. +...++=|-| |++ .....+....+..++..+||+
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~A--------r~~~G~filRieD----tD~--~R~~~~~~~~i~~dl~wlGl~ 90 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFA--------RKMKGTFVLRIED----TDV--ERSSQEAVDAILEGMAWLGLD 90 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHH--------HHTTCEEEEEECC----CCG--GGCCHHHHHHHHHHHHHTTCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHH--------HhcCCeEEEEeCC----CCc--ccccHHHHHHHHHHHHHcCCC
Confidence 34444455677999999999999999887 33 3444444544 221 123456777888899999999
Q ss_pred CCceEEEEcCCcch-hhHHHH-------HHhccccHHHHhh
Q 014300 157 NSKASVFVQSHVRA-HVELMW-------LLSSATPIGWLNK 189 (427)
Q Consensus 157 p~k~~if~QS~v~~-~~eL~w-------~L~~~t~i~~l~R 189 (427)
++. ..|.||+..+ +.+..- .+.|+++-.+|..
T Consensus 91 ~d~-~~~~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~ 130 (490)
T 4g6z_A 91 YDE-GPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDA 130 (490)
T ss_dssp CSE-EEEEGGGCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred CCC-CCcccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHH
Confidence 987 4689999532 222211 2348888777754
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.68 E-value=0.00014 Score=77.01 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=92.5
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 81 i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
+.+=| .|||.+||||...++-+|.... +.+..+++=|-|. ++ .....+....+..++..+|++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-------~~~G~~iLRieDt----D~--~R~~~e~~~~I~edL~wLGl~wd 163 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-------KYDGRLILRIEDT----DP--RRVDPEAYDMIPADLEWLGVEWD 163 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCC----CG--GGCCTTHHHHHHHHHHHHTCCCS
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCC
Confidence 34444 4569999999999998888761 2234455446664 21 12233566678888999999997
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHhhhh------hHHH-----HHH-----hhCC------------
Q 014300 159 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI------QFKE-----KSH-----KAGG------------ 202 (427)
Q Consensus 159 k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~R~~------~~k~-----~~~-----~~~~------------ 202 (427)
.+++||+..+ +.+..-. +.|.++-.++.... .+.. ... ..|.
T Consensus 164 --~~~~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~ 241 (553)
T 3aii_A 164 --ETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDL 241 (553)
T ss_dssp --EEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCT
T ss_pred --CCcccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEccc
Confidence 5899999643 3222211 23777666554211 0100 000 0110
Q ss_pred --CCccc----------------cc--chhhHHH---HhhhhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccc
Q 014300 203 --ENVGV----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 259 (427)
Q Consensus 203 --~~~~~----------------g~--l~YPvLQ---AADIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k 259 (427)
.+.++ |- ..||..+ +.|.-+.+.|+|..|.|...+-..-.-+...+ |
T Consensus 242 ~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~al----G------ 311 (553)
T 3aii_A 242 NHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHL----G------ 311 (553)
T ss_dssp TCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHH----T------
T ss_pred ccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHc----C------
Confidence 00011 11 1355554 44556678999999999987665544444443 3
Q ss_pred cCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014300 260 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 296 (427)
Q Consensus 260 ~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 296 (427)
++.|...+.+ +| .+ +| .|||||.
T Consensus 312 --------~~~P~y~H~~---~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 --------WEPPEFIHYG---RL-KM-DD-VALSTSG 334 (553)
T ss_dssp --------CCCCEEECCC---CB-C---------CHH
T ss_pred --------CCCCeEEEee---EE-ec-CC-ceechhh
Confidence 4567766554 66 44 56 5999996
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.11 E-value=0.0019 Score=67.96 Aligned_cols=178 Identities=20% Similarity=0.185 Sum_probs=101.7
Q ss_pred ecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCce---
Q 014300 84 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA--- 160 (427)
Q Consensus 84 Gi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~--- 160 (427)
-=.|||.+||||...|+-+|.... +.+.++++=|=|. ++. ....+....+..++.-+||+++.-
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar-------~~~G~fiLRieDt----D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~ 96 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAK-------SCGGKFLLRIEDT----DQS--RYSPEAENDLYSSLKWLGISFDEGPVV 96 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHH-------HTTCEEEECBCCC----CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTT
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEeCcC----CCC--cCCHHHHHHHHHHHHHcCCCCCcCCcc
Confidence 335679999999999999998871 3344444335553 221 111234456667777889998753
Q ss_pred ----EEEEcCCcchhh-HHH-HH------HhccccHHHHhhhhhHH-------------------HHHHh--hCC-----
Q 014300 161 ----SVFVQSHVRAHV-ELM-WL------LSSATPIGWLNKMIQFK-------------------EKSHK--AGG----- 202 (427)
Q Consensus 161 ----~if~QS~v~~~~-eL~-w~------L~~~t~i~~l~R~~~~k-------------------~~~~~--~~~----- 202 (427)
..|+||+-.+.- +.. .+ +.|.++-.++.+..... +.... .+.
T Consensus 97 ~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R 176 (512)
T 4gri_A 97 GGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVR 176 (512)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceee
Confidence 347999854321 111 11 34888877775432211 00000 000
Q ss_pred ------CCc-----ccccch-----------------hhHHHHhhh---hccccceEecccchHHHHHHHHHHHHHHhhh
Q 014300 203 ------ENV-----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYL 251 (427)
Q Consensus 203 ------~~~-----~~g~l~-----------------YPvLQAADI---ll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~ 251 (427)
.++ -.|.+. ||..+=|-. .+.+.++|.-|.|...+--.-.-|.+-|+
T Consensus 177 ~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg-- 254 (512)
T 4gri_A 177 FKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK-- 254 (512)
T ss_dssp ECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT--
T ss_pred ecccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC--
Confidence 000 012211 222222211 12468999999999887766666666544
Q ss_pred hcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014300 252 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 252 yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
++.|...+.+ .|.+- +| +|+||.+.
T Consensus 255 ----------------~~~P~y~H~p---li~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 ----------------WKPPIYCHLP---MVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp ----------------CCCCEEEEEC---CCBCT-TS-SBCCTTTS
T ss_pred ----------------CCCCeEEecc---hhccc-cc-cccCcccc
Confidence 6788877665 77775 56 69999974
No 47
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.08 E-value=0.0032 Score=65.54 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=50.0
Q ss_pred CceEEEecC--CCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCH-HHHHHHHHH
Q 014300 78 KKRIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRE 145 (427)
Q Consensus 78 ~~~i~sGi~--PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~~~ 145 (427)
+..+++|-- |||.+||||....+-.-+-. +++ ..|++|.+. =.|-|..-. ..++ +-..++...
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~-----R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 79 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIA-----RYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAER 79 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHH-----HHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHH-----HHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345556655 66999999987655432222 332 247887544 334443321 1234 334456667
Q ss_pred HHHHHHHcCccCCceEEEEcCC
Q 014300 146 TAAIYLACGIDNSKASVFVQSH 167 (427)
Q Consensus 146 ~~a~~lA~GiDp~k~~if~QS~ 167 (427)
+..++.++|++++ .++..++
T Consensus 80 ~~~~~~~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 80 FKKLWEFLKIEYT--KFIRTTD 99 (497)
T ss_dssp HHHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHHhCCcCC--CCccCCC
Confidence 8889999999988 4666776
No 48
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.06 E-value=0.0032 Score=66.28 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=47.8
Q ss_pred CceEEEecCC--CCcchhhhhHHHHHHHHHhcccccccc-cccceEEE-EEeccceecc-------CCCHHHH-HHHHHH
Q 014300 78 KKRIVSGVQP--TGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAITL-------PYDTQQL-SKATRE 145 (427)
Q Consensus 78 ~~~i~sGi~P--TG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t~-------~~~~~~l-~~~~~~ 145 (427)
+...++|--| ||.+||||..+++..-+- .+++ ..|++|.+ .-.|.|..-. ..+++++ .+....
T Consensus 25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~l-----aR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~ 99 (536)
T 4dlp_A 25 EKYYITTAIAYPNGKPHIGHAYELIATDAM-----ARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSA 99 (536)
T ss_dssp CEEEEEECCBCCSSCCCHHHHHHHHHHHHH-----HHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCcCcchhHHHHHHHHH-----HHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455566554 599999998765532111 1222 24788754 4556654321 1244433 445556
Q ss_pred HHHHHHHcCccCCceEEEEcCC
Q 014300 146 TAAIYLACGIDNSKASVFVQSH 167 (427)
Q Consensus 146 ~~a~~lA~GiDp~k~~if~QS~ 167 (427)
+..++.++|++++ .++.-++
T Consensus 100 ~~~~l~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 100 FRRMAEVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHHcCCCCC--cceeCCC
Confidence 7788889999988 3444443
No 49
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=96.94 E-value=0.0026 Score=66.09 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=48.4
Q ss_pred ceEEEecCC--CCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCHHHH-HHHHHHH
Q 014300 79 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQL-SKATRET 146 (427)
Q Consensus 79 ~~i~sGi~P--TG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~l-~~~~~~~ 146 (427)
..+++|--| +|.+||||..+.+..-+- -+++ ..|++|.+. -.|-|..-. ..++.++ .++...+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~-----~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 78 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFL-----ARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHH-----HHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHH-----HHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455666666 799999998765543222 1333 247887554 234333211 1234333 3455577
Q ss_pred HHHHHHcCccCCceEEEEcCC
Q 014300 147 AAIYLACGIDNSKASVFVQSH 167 (427)
Q Consensus 147 ~a~~lA~GiDp~k~~if~QS~ 167 (427)
..++.++|++++ .++..++
T Consensus 79 ~~~~~~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 79 KRAWDLLGIAYD--DFIRTTE 97 (500)
T ss_dssp HHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHhCCcCC--CCcccCC
Confidence 788899999988 4566666
No 50
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=96.18 E-value=0.0033 Score=67.21 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=27.5
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEE--Eecc
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF--IVDL 127 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~--IaDl 127 (427)
..-|+|--|+|.+||||.-+++--=. +.+++. .|++|++. |.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~-----laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDA-----IARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHH-----HHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHH-----HHHHHHHcCCceEEEeccCCc
Confidence 34478999999999999876542100 112222 37888653 7776
No 51
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=95.50 E-value=0.039 Score=57.20 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=44.8
Q ss_pred EEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-cceEEEE--Eeccceec------cCCCHHHH-HHHHHHHHHHH
Q 014300 81 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHAIT------LPYDTQQL-SKATRETAAIY 150 (427)
Q Consensus 81 i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA~t------~~~~~~~l-~~~~~~~~a~~ 150 (427)
.++|--|.|.+||||.-.++-.-+- .++++. |++|++. +.|+=--+ ...++.++ ..+...+..++
T Consensus 26 yv~gPt~y~~~HiGHar~~v~~D~l-----~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 26 YVCGITVYDLCHIGHGRTFVAFDVV-----ARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EECCCBSSSCCBHHHHHHHHHHHHH-----HHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCcCCCCCcccccHHHHHHHHH-----HHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455555599999998655433221 233333 7887655 34442111 11244443 34455777888
Q ss_pred HHcCccCCceEEEEcCC
Q 014300 151 LACGIDNSKASVFVQSH 167 (427)
Q Consensus 151 lA~GiDp~k~~if~QS~ 167 (427)
.++|+.+.. .+..+|+
T Consensus 101 ~~LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 101 DALNILRPD-MEPRATH 116 (461)
T ss_dssp HHTTCCCCS-BCCBGGG
T ss_pred HHcCCCCCc-ccccccc
Confidence 899998522 2345555
No 52
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.45 E-value=0.036 Score=58.24 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=52.7
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceE-EEEEeccceecc--CC------------C-------
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYET-LFFIVDLHAITL--PY------------D------- 135 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~-~i~IaDlhA~t~--~~------------~------- 135 (427)
.++-+|.-|||.+||||.-.++..++-. +|+. .++++ +++-.|.|--.. |. +
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~la-----R~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p 96 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVG-----HALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDP 96 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHH-----HHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCT
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHH-----HHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcc
Confidence 5666799999999999998888775543 3333 36776 444455554111 00 0
Q ss_pred ----HHHHHHHHHHHHHHHHHcCccCCceEEEEcCC
Q 014300 136 ----TQQLSKATRETAAIYLACGIDNSKASVFVQSH 167 (427)
Q Consensus 136 ----~~~l~~~~~~~~a~~lA~GiDp~k~~if~QS~ 167 (427)
.+-..++...+..++..+||+++ +|.||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 97 WGCHESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp TSSSSSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11224466677888889999987 459998
No 53
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.07 E-value=0.079 Score=56.17 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=61.9
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 158 (427)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~ 158 (427)
.+.=-+=.|||.+||||.-.++-+|.... +.+..+++=|-|.- + .....+....+..++..+||+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-------~~gG~fiLRieDTD----~--~R~~~e~~~~I~edL~wLGl~wd 93 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-------DYKGQCNLRFDDTN----P--VKEDIEYVESIKNDVEWLGFHWS 93 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCCC----G--GGCCHHHHHHHHHHHHHTTCCCS
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECCCC----c--hhcCHHHHHHHHHHHHHcCCCCC
Confidence 34444666789999999999998988761 22445554466642 1 23344566788888999999985
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014300 159 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLN 188 (427)
Q Consensus 159 k~~if~QS~v~~-~~eL~w~-------L~~~t~i~~l~ 188 (427)
. ..++||+..+ +.+.+-. +.|.++-.++.
T Consensus 94 e-~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 94 G-NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp S-SCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred C-CCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 4 4699998643 3332222 23777766554
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=94.02 E-value=0.034 Score=59.88 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=26.4
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEE--Eecc
Q 014300 82 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF--IVDL 127 (427)
Q Consensus 82 ~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~--IaDl 127 (427)
|+|--|+|.+|+||.-+++--- .+.+++. .|++|+.. |.||
T Consensus 125 ~~spN~~~~~HiGH~Rs~iigD-----~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTKPLHMGHARNAILGD-----VMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTSCCBHHHHHHHHHHH-----HHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCCCCccchhHHHHHHH-----HHHHHHHHcCCCceEEecccch
Confidence 7899999999999986544210 0111222 47887654 7777
No 55
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=93.80 E-value=0.17 Score=52.56 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=43.5
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEE-Eecccee--cc-----CCCHHH-HHHHHHHHHHH
Q 014300 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF-IVDLHAI--TL-----PYDTQQ-LSKATRETAAI 149 (427)
Q Consensus 80 ~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~-IaDlhA~--t~-----~~~~~~-l~~~~~~~~a~ 149 (427)
..++|.-|.|.+||||....+-. + .+.+|+. .|++|.+. -.|.|-- .. ..++.+ ..+++..+..+
T Consensus 28 ~YvcGPtvy~~~HIGHaR~~v~~--D---vl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 28 LYVCGMTVYDYMHIGHGRSWIIF--D---MVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHH--H---HHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCchhhhHHHHHH--H---HHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34578888899999997654321 1 1223332 37887554 3333321 00 124433 34555678888
Q ss_pred HHHcCccCCc
Q 014300 150 YLACGIDNSK 159 (427)
Q Consensus 150 ~lA~GiDp~k 159 (427)
+.++|+.++.
T Consensus 103 ~~~LgI~~d~ 112 (462)
T 3tqo_A 103 EKALRVLSPD 112 (462)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCc
Confidence 8899998754
No 56
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.49 E-value=0.11 Score=57.51 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=60.5
Q ss_pred EecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014300 83 SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 162 (427)
Q Consensus 83 sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~k~~i 162 (427)
-+=.|||.+||||.-.++-+|.... +.+..+++=|-|. ++. ....++...+..++..+||+++. .+
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~Ar-------~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~ 136 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTAR-------QYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HF 136 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CE
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-Cc
Confidence 3667789999999999998988761 2244555556664 221 33446677888888999999854 47
Q ss_pred EEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014300 163 FVQSHVRA-HVELMWL-------LSSATPIGWLN 188 (427)
Q Consensus 163 f~QS~v~~-~~eL~w~-------L~~~t~i~~l~ 188 (427)
++||+..+ +.+..-. +.|.++-.++.
T Consensus 137 ~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 137 YYASDYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp EEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred ccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 99999643 3222211 24777766554
No 57
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=89.51 E-value=0.89 Score=47.84 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=46.8
Q ss_pred ceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCHHH-HHHHHHHHH
Q 014300 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETA 147 (427)
Q Consensus 79 ~~i~sG-i~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~-l~~~~~~~~ 147 (427)
..|.++ .-|||.+||||..+.+..-+- .+++ ..|++|.+. -.|.|..-. ..++++ ..+....+.
T Consensus 20 ~~v~~~~py~ng~lHiGH~r~~v~~D~l-----aR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 94 (560)
T 3h99_A 20 ILVTCASPYANGSIHLGHMLEHIQADVW-----VRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQ 94 (560)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHH-----HHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHH-----HHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444 345599999998876543211 1222 237887544 455554321 124443 344556777
Q ss_pred HHHHHcCccCCceEEEEcC
Q 014300 148 AIYLACGIDNSKASVFVQS 166 (427)
Q Consensus 148 a~~lA~GiDp~k~~if~QS 166 (427)
.++.++|++++. ++.-+
T Consensus 95 ~~~~~lgi~~d~--~~~t~ 111 (560)
T 3h99_A 95 TDFAGFNISYDN--YHSTH 111 (560)
T ss_dssp HHHHHTTCCCSE--EEESS
T ss_pred HHHHHcCCCCCC--ceeCC
Confidence 888999999884 44444
No 58
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=88.35 E-value=1.3 Score=46.26 Aligned_cols=89 Identities=9% Similarity=0.052 Sum_probs=52.2
Q ss_pred CCceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEEE-eccceec--c-----CCCH-HHHHHHHHH
Q 014300 77 VKKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFI-VDLHAIT--L-----PYDT-QQLSKATRE 145 (427)
Q Consensus 77 ~~~~i~sG-i~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~I-aDlhA~t--~-----~~~~-~~l~~~~~~ 145 (427)
+++.|-|. --++|.+||||.++.+.. ++ +.+|+ ..|++|++.- .|-|.+- . ..++ +-..++...
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~--Di---i~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLIT--DV---IGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGE 83 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHH--HH---HHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHH--HH---HHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455555 357899999998875421 22 22332 3488886654 4444332 1 2255 344556677
Q ss_pred HHHHHHHcCccCCceEEEEcCCcchhhH
Q 014300 146 TAAIYLACGIDNSKASVFVQSHVRAHVE 173 (427)
Q Consensus 146 ~~a~~lA~GiDp~k~~if~QS~v~~~~e 173 (427)
+..++.++|++.+. |.-..-++|.+
T Consensus 84 ~~~~~~~lgi~~D~---~~~T~~~~~~~ 108 (542)
T 3u1f_A 84 FKKCFEQMDYSIDY---FIRTTNEQHKA 108 (542)
T ss_dssp HHHHHHHHTCCCSE---EEETTCHHHHH
T ss_pred HHHHHHHhCCccCc---CccCCCHHHHH
Confidence 88889999999874 33344445544
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=85.07 E-value=2.9 Score=44.10 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=47.0
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEE-EEEeccceecc-------CCCHHH-HHHHHHHHH
Q 014300 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETL-FFIVDLHAITL-------PYDTQQ-LSKATRETA 147 (427)
Q Consensus 80 ~i~sGi--~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~-i~IaDlhA~t~-------~~~~~~-l~~~~~~~~ 147 (427)
.++++- -|+|.+||||..+.+..-+- -+++ ..|++|+ ++-.|.|..-. ..++++ ..+....+.
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~l-----aR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVL-----GRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHH-----HHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHH-----HHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344443 47799999998765532111 1222 2378874 44566665321 124533 344556777
Q ss_pred HHHHHcCccCCceEEEEcCC
Q 014300 148 AIYLACGIDNSKASVFVQSH 167 (427)
Q Consensus 148 a~~lA~GiDp~k~~if~QS~ 167 (427)
.++..+||+.+. ++.-++
T Consensus 103 ~~~~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 103 QCFQEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHHHHTTCCCSE--EEETTS
T ss_pred HHHHHcCCCCCc--cccCCC
Confidence 888899999883 444443
No 60
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=82.66 E-value=0.42 Score=50.52 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=34.0
Q ss_pred cccceEecccchHHHHHH---HHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014300 223 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 299 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eL---aRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 299 (427)
+.+|+..+|.||..++-+ ++-.+ .| ++.|..++.. ..| .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 357899999999885322 22222 23 3445554432 255 33 56 6999997
Q ss_pred CceeecC
Q 014300 300 QSRINLL 306 (427)
Q Consensus 300 ~s~I~L~ 306 (427)
+|.|.+.
T Consensus 345 GNvV~p~ 351 (564)
T 3kfl_A 345 GNAFDPV 351 (564)
T ss_dssp TCCCCHH
T ss_pred CCCCCHH
Confidence 6788654
No 61
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=82.33 E-value=0.43 Score=49.73 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCHHHH-HHHHHHHHHHHHHcCc
Q 014300 86 QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQL-SKATRETAAIYLACGI 155 (427)
Q Consensus 86 ~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~l-~~~~~~~~a~~lA~Gi 155 (427)
-|+|.+||||....+-.=+ +-+++ ..|++|.+. -.|-|..-. ..++.++ .++...+..++.++|+
T Consensus 22 ~~ng~lHiGHa~~~i~~D~-----l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDA-----IARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHH-----HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchhHHHHHHHH-----HHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3579999999875443211 22332 247887553 334443211 1234333 3455677788889999
Q ss_pred cCCceEEEEcCC
Q 014300 156 DNSKASVFVQSH 167 (427)
Q Consensus 156 Dp~k~~if~QS~ 167 (427)
+++ .++..++
T Consensus 97 ~~d--~~~~t~~ 106 (524)
T 2x1l_A 97 SFD--RFIRTSD 106 (524)
T ss_dssp CCS--EEEETTS
T ss_pred cCC--CCeecCC
Confidence 887 4556665
No 62
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=82.31 E-value=4.2 Score=44.23 Aligned_cols=76 Identities=13% Similarity=0.269 Sum_probs=46.6
Q ss_pred CceEEEec-CCCCcchhhhhHH-HHH-H-HHHhcccccccccccceEEEE-Eeccceecc-------CCCHHH-HHHHHH
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLG-AIK-N-WIALQPFCDLMLQNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATR 144 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg-aik-~-~~~l~~~~~~~~Q~~~~~~i~-IaDlhA~t~-------~~~~~~-l~~~~~ 144 (427)
+..|.+++ -|+|.+||||..+ .+. - +..+ .-..|++|++. -.|-|.+-. ..++.+ ..++..
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy------~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~ 76 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRY------LRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE 76 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHH------HHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHH------HHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35566665 6789999999987 332 1 2222 01248887555 556665421 225543 344556
Q ss_pred HHHHHHHHcCccCCc
Q 014300 145 ETAAIYLACGIDNSK 159 (427)
Q Consensus 145 ~~~a~~lA~GiDp~k 159 (427)
.+..+|.++|++.+.
T Consensus 77 ~~~~~~~~lgis~D~ 91 (722)
T 1rqg_A 77 QIKITFQRAKISFDF 91 (722)
T ss_dssp HHHHHHHHHTCCCSE
T ss_pred HHHHHHHHhCCCCCC
Confidence 778888999998884
No 63
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=81.28 E-value=0.72 Score=50.82 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=35.1
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~adlvpvG~DQ~q-h~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
+-+|+..+|.||.. |+...+-...- .++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHH---HcCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999975 76654332221 1221 1234444432 23332 56 6999997 67
Q ss_pred eeecCC
Q 014300 302 RINLLD 307 (427)
Q Consensus 302 ~I~L~D 307 (427)
.|.+.|
T Consensus 658 vv~p~d 663 (810)
T 1wkb_A 658 VLNFID 663 (810)
T ss_dssp CCBHHH
T ss_pred cCCHHH
Confidence 777643
No 64
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=80.19 E-value=0.67 Score=48.36 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=31.7
Q ss_pred ccceEecccchHHHHH---HHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014300 224 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300 (427)
Q Consensus 224 ~adlvpvG~DQ~qh~e---LaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 300 (427)
-+|+...|.||..++. .++-++. | ++.|..++.. ..|- . +| +|||||. +
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l~-~-~G-~KMSKSl---G 329 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWWT-K-DR-KKISKSL---G 329 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCCE-E-TT-BCCBTTT---T
T ss_pred cceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--ccee-c-CC-ceecccc---C
Confidence 3689999999987542 2322221 2 3445544432 1332 2 45 7999997 6
Q ss_pred ceeec
Q 014300 301 SRINL 305 (427)
Q Consensus 301 s~I~L 305 (427)
|.|..
T Consensus 330 Nvi~p 334 (542)
T 3u1f_A 330 NVFDP 334 (542)
T ss_dssp BCCCH
T ss_pred CCCCh
Confidence 77754
No 65
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=79.03 E-value=0.41 Score=49.62 Aligned_cols=75 Identities=29% Similarity=0.224 Sum_probs=39.7
Q ss_pred ccchhhHHHHhhhhcc------ccceE--ecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCC
Q 014300 208 ALLTYPVLMASDILLY------QSDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 279 (427)
Q Consensus 208 g~l~YPvLQAADIll~------~adlv--pvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~ 279 (427)
|..+| .+.||-+. ..|.+ .+|.||..|+.--..+++.++ +..|..-+-..
T Consensus 215 G~~~Y---~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG------------------~~~~~~~h~~~- 272 (464)
T 3fnr_A 215 GRGTY---LAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLG------------------FDSNNLEIILA- 272 (464)
T ss_dssp SCBCH---HHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTT------------------CCGGGEEEEEE-
T ss_pred Cceeh---hhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcC------------------CCccceEEEEe-
Confidence 55555 45555432 35644 699999999987777766543 22222111111
Q ss_pred cccccCCCCC-CccccCCCCCCceeecCC
Q 014300 280 ARVMSLTDGL-SKMSKSAPSDQSRINLLD 307 (427)
Q Consensus 280 ~~l~sL~dg~-~KMSKS~p~~~s~I~L~D 307 (427)
.+|.-..||+ .|||||. ++.|.+.|
T Consensus 273 g~V~l~~dG~~~KMSKr~---Gn~v~l~d 298 (464)
T 3fnr_A 273 QMVSLLKDGEPYKMSKRA---GNFILMSD 298 (464)
T ss_dssp CCEEEEETTEECCC---C---CSSCBHHH
T ss_pred eeEEecCCCcccCCcCcC---CCCCCHHH
Confidence 1331113553 5999997 67887754
No 66
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=78.40 E-value=0.97 Score=50.91 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=34.3
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~adlvpvG~DQ~q-h~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
+-+|+...|.||.. |+...+-...- .++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 56899999999965 65554322211 1221 1224434332 23432 56 6999997 67
Q ss_pred eeecC
Q 014300 302 RINLL 306 (427)
Q Consensus 302 ~I~L~ 306 (427)
.|.+.
T Consensus 658 vv~p~ 662 (967)
T 1wz2_A 658 VLNFI 662 (967)
T ss_dssp CCBHH
T ss_pred CCCHH
Confidence 77664
No 67
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=76.18 E-value=1.1 Score=45.59 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=47.2
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEE-EEeccceecc-------CCCHHH-HHHHHHHHHHH
Q 014300 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAI 149 (427)
Q Consensus 80 ~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t~-------~~~~~~-l~~~~~~~~a~ 149 (427)
..++|.-|.|.+||||..+.+-. +. +.+++ ..|++|.+ .-.|.|..-. ..++.+ ..++...+..+
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~--Dv---laR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~ 116 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTF--DL---VHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED 116 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHH--HH---HHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCcCccccHHHHHH--HH---HHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44667777799999998755422 11 12222 23788744 4556664211 124433 34445677788
Q ss_pred HHHcCcc-CCceEEEEcCC
Q 014300 150 YLACGID-NSKASVFVQSH 167 (427)
Q Consensus 150 ~lA~GiD-p~k~~if~QS~ 167 (427)
+.++|+. ++ .++..|+
T Consensus 117 ~~~Lgi~~~d--~~~r~t~ 133 (414)
T 3c8z_A 117 MAALRVLPPH--DYVAATD 133 (414)
T ss_dssp HHHTTCCCCS--EEEEGGG
T ss_pred HHHcCCCCCc--ceecccc
Confidence 8899998 65 3445555
No 68
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=74.98 E-value=1 Score=50.21 Aligned_cols=60 Identities=28% Similarity=0.350 Sum_probs=36.7
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014300 223 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 301 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 301 (427)
|-+|+...|.||.. +=++|.++.... ..|. .| ..++.. ..+... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g~---------------~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMGE---------------RPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSSS---------------CSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcCC---------------CcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 56899999999975 446777766542 1231 24 222221 244443 56 6999997 57
Q ss_pred eeecC
Q 014300 302 RINLL 306 (427)
Q Consensus 302 ~I~L~ 306 (427)
.|...
T Consensus 536 vIdP~ 540 (862)
T 1gax_A 536 VIDPL 540 (862)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77653
No 69
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=73.99 E-value=1.6 Score=48.87 Aligned_cols=58 Identities=31% Similarity=0.327 Sum_probs=34.2
Q ss_pred ccccceEecccchHH---HHHHHHHHHHHHhhhhcCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCC
Q 014300 222 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 297 (427)
Q Consensus 222 l~~adlvpvG~DQ~q---h~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p 297 (427)
.+-+|+...|.||.. |-.+...++- .|. .| ..++.. .+|... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g~---------------~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RGV---------------SPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HSS---------------CSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hCC---------------CcccceeEe--eeEEcC-CC-cCccccc-
Confidence 366899999999973 4444555441 231 23 223221 255443 56 6999997
Q ss_pred CCCceeecC
Q 014300 298 SDQSRINLL 306 (427)
Q Consensus 298 ~~~s~I~L~ 306 (427)
+|.|.+.
T Consensus 601 --GNvV~P~ 607 (917)
T 1ffy_A 601 --GNVIVPD 607 (917)
T ss_dssp --SCCCCHH
T ss_pred --CCcCChH
Confidence 6777653
No 70
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=72.86 E-value=1.8 Score=47.77 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.8
Q ss_pred cccceEecccchHH
Q 014300 223 YQSDFVPVGEDQKQ 236 (427)
Q Consensus 223 ~~adlvpvG~DQ~q 236 (427)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999974
No 71
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=71.39 E-value=7.5 Score=40.21 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.4
Q ss_pred cccceEecccchHHH
Q 014300 223 YQSDFVPVGEDQKQH 237 (427)
Q Consensus 223 ~~adlvpvG~DQ~qh 237 (427)
+.+|+..+|.||...
T Consensus 264 ~p~di~~~G~D~~~f 278 (524)
T 2x1l_A 264 WPADLHMIGKDIIRF 278 (524)
T ss_dssp CSCSEEEEEGGGHHH
T ss_pred CCCeEEEEeechhHh
Confidence 358999999999853
No 72
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=71.16 E-value=1.6 Score=45.92 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=18.2
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014300 268 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 306 (427)
Q Consensus 268 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 306 (427)
++.|..++.. .+|.. +| +|||||. +|.|.+.
T Consensus 327 ~~~p~~v~~h--g~v~~--~G-~KMSKS~---GNvv~p~ 357 (560)
T 3h99_A 327 FRKPSNLFVH--GYVTV--NG-AKMSKSR---GTFIKAS 357 (560)
T ss_dssp BCCCSEEEEE--CCEEE--TT-EECCTTT---TCCCBHH
T ss_pred CCCCcEEEEE--eEEEe--CC-eeccccC---CCcCCHH
Confidence 4566544422 13322 56 6999997 6777654
No 73
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=67.95 E-value=15 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.120 Sum_probs=20.3
Q ss_pred HHhhhhccccceEecccchHH-HHHHHHHHHH
Q 014300 216 MASDILLYQSDFVPVGEDQKQ-HLELTRELAE 246 (427)
Q Consensus 216 QAADIll~~adlvpvG~DQ~q-h~eLaRdiA~ 246 (427)
|+...+-...|+.++|.|+.. |++...-...
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~ 267 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHAE 267 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHHH
Confidence 344444345799999999887 7766544433
No 74
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=65.15 E-value=18 Score=37.77 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=44.4
Q ss_pred CceE-EEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEEE--Eecc---------c--eecc-----CCCHH
Q 014300 78 KKRI-VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF--IVDL---------H--AITL-----PYDTQ 137 (427)
Q Consensus 78 ~~~i-~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i~--IaDl---------h--A~t~-----~~~~~ 137 (427)
++++ ++|.-|.|.+||||....+.. + .+.+|++ .|++|.+. |.|+ | .+.. ..++.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~--D---vl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~ 116 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFG--D---LLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVY 116 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHH--H---HHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHH--H---HHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHH
Confidence 3444 457666699999997643321 1 1233433 37888776 4444 3 2222 12453
Q ss_pred -HHHHHHHHHHHHHHHcCccCCc
Q 014300 138 -QLSKATRETAAIYLACGIDNSK 159 (427)
Q Consensus 138 -~l~~~~~~~~a~~lA~GiDp~k 159 (427)
-..+++..+..++.++|+.++.
T Consensus 117 e~a~~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 117 EISEFFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC
Confidence 4455667788899999998775
No 75
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=61.06 E-value=17 Score=40.45 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=45.5
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCH-HHHHHHHHHH
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRET 146 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~~~~ 146 (427)
+..+++++ -|||.+||||..+.+.. +. +-+|+ ..|++|.+. --|-|.+-. ..++ +-..+++..+
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~--Dv---laRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~ 128 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIG--DV---IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYM 128 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHH--HH---HHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHH--HH---HHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45677776 67899999998764322 11 11222 347887554 445554421 1234 3334456677
Q ss_pred HHHHHHcCccCC
Q 014300 147 AAIYLACGIDNS 158 (427)
Q Consensus 147 ~a~~lA~GiDp~ 158 (427)
..++.++|+..+
T Consensus 129 ~~~l~~LGis~D 140 (880)
T 4arc_A 129 KNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHHHhCCCcC
Confidence 788889998877
No 76
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=58.07 E-value=5.5 Score=44.37 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.3
Q ss_pred cccceEecccch-HHHHHHHHHHHHH
Q 014300 223 YQSDFVPVGEDQ-KQHLELTRELAER 247 (427)
Q Consensus 223 ~~adlvpvG~DQ-~qh~eLaRdiA~r 247 (427)
+-+|+...|.|| .-|+-.+|=+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 469999999999 6777777766543
No 77
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=53.73 E-value=6.1 Score=41.29 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=19.7
Q ss_pred HHHhhhhccccceEecccch-HHHHHHHHHH
Q 014300 215 LMASDILLYQSDFVPVGEDQ-KQHLELTREL 244 (427)
Q Consensus 215 LQAADIll~~adlvpvG~DQ-~qh~eLaRdi 244 (427)
-|+...|--..|+-.+|.|. .+|++--.-.
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAq 274 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAI 274 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHH
Confidence 34555555567999999996 4677654333
No 78
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=53.42 E-value=3.8 Score=42.73 Aligned_cols=70 Identities=27% Similarity=0.338 Sum_probs=32.9
Q ss_pred ccceEecccchHH---HHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCC-CCCCccccCCCCC
Q 014300 224 QSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPSD 299 (427)
Q Consensus 224 ~adlvpvG~DQ~q---h~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~-dg~~KMSKS~p~~ 299 (427)
..++-++|.|+.. ......+++.. .+| .+.|..++.. +|.. . +| +|||||.
T Consensus 230 ~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~---~i~~-~g~g-~KmSKs~--- 284 (523)
T 1irx_A 230 GVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYE---FVGI-KGQK-GKMSGSK--- 284 (523)
T ss_dssp CCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEEC---CEEE-SCC------------
T ss_pred CCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEE---EEEe-CCCC-CCCCCcC---
Confidence 4455588999887 22334566632 345 3456444433 4433 2 24 7999997
Q ss_pred CceeecCC-----CHHHHHHHhhh
Q 014300 300 QSRINLLD-----PKDVIANKIKR 318 (427)
Q Consensus 300 ~s~I~L~D-----spe~I~kKI~k 318 (427)
+|.|.+.| .|+.++.=+.+
T Consensus 285 Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp -CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 45654432 57777776654
No 79
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=52.88 E-value=10 Score=42.36 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=19.8
Q ss_pred cccceEecccch-HHHHHHHHHHHHHH
Q 014300 223 YQSDFVPVGEDQ-KQHLELTRELAERV 248 (427)
Q Consensus 223 ~~adlvpvG~DQ-~qh~eLaRdiA~r~ 248 (427)
+-+|+-.+|.|| .-|+-.+|=....+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 468999999999 56888887554443
No 80
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=48.09 E-value=23 Score=39.36 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=28.7
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eecccee
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAI 130 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~ 130 (427)
++.|++|. -|||.+|+||.++.... ++ +-+|. ..|+++.+. --|-|.+
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~--Di---i~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQ--DA---LIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHH--HH---HHHHHHTTTSEEEEECEEBCCTH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHH--HH---HHHHHHhCCCccccccccCCCCc
Confidence 45666653 56899999998764322 21 22221 347887554 5677765
No 81
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=45.69 E-value=4.5 Score=41.72 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=4.9
Q ss_pred ceEecccchHHHHHH
Q 014300 226 DFVPVGEDQKQHLEL 240 (427)
Q Consensus 226 dlvpvG~DQ~qh~eL 240 (427)
++||||.||++|.|-
T Consensus 235 ~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 235 TRVPLPVGTGNEDAA 249 (451)
T ss_dssp GCCBCC---------
T ss_pred cccccccccccchhh
Confidence 468999999999544
No 82
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=37.41 E-value=22 Score=37.95 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.4
Q ss_pred ccchhhHHHHhhh--hc-----cccceEe--cccchHHHHHHHHHHHHHHh
Q 014300 208 ALLTYPVLMASDI--LL-----YQSDFVP--VGEDQKQHLELTRELAERVN 249 (427)
Q Consensus 208 g~l~YPvLQAADI--ll-----~~adlvp--vG~DQ~qh~eLaRdiA~r~n 249 (427)
|..+|- +.|| .+ ++.|.+. +|.||..|+.-...+++.++
T Consensus 343 G~~~Y~---t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 343 GTTLYL---TRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp SCCCHH---HHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCcCCC---CCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 555663 5676 22 2456666 99999999988888887654
No 83
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=36.30 E-value=29 Score=38.58 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=43.7
Q ss_pred CceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eeccceecc-------CCCH-HHHHHHHHHH
Q 014300 78 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRET 146 (427)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~-~~l~~~~~~~ 146 (427)
+..+++| --|+|.+||||..+.+.. +. +-+|+ ..|++|.+. --|-|.+-. ..++ +-..+++..+
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~--Dv---l~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~ 108 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMG--DV---LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHH--HH---HHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHH--HH---HHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4677777 445699999998764322 11 11222 237887544 334444321 1133 3345556677
Q ss_pred HHHHHHcCccCC
Q 014300 147 AAIYLACGIDNS 158 (427)
Q Consensus 147 ~a~~lA~GiDp~ 158 (427)
..++..+|+..+
T Consensus 109 ~~~~~~LGi~~D 120 (878)
T 2v0c_A 109 KESLRLMGILYD 120 (878)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHHHhCCccC
Confidence 788889998665
No 84
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=35.69 E-value=26 Score=38.40 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=25.6
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceEEEE-Eecccee
Q 014300 79 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAI 130 (427)
Q Consensus 79 ~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~ 130 (427)
+.|.+|. -|+|.+||||.++.+.. +. +-+|. ..|++|.+. --|.|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~--D~---i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIP--DV---IARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHH--HH---HHHHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHH--HH---HHHHHHcCCCccCcCCccCCCCC
Confidence 4444443 35799999998875432 11 11221 347887654 3355544
No 85
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=32.26 E-value=18 Score=39.71 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=29.0
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-cccceE-EEEEecccee
Q 014300 78 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAI 130 (427)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~ 130 (427)
++.+++|. -|||.+|+||.++.+.. +. +-+|. ..|++| +++--|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~--D~---i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYK--DL---FPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHH--HH---HHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHH--HH---HHHHHHhcCCcccccccccCCCc
Confidence 45666666 67899999998864322 21 11221 347886 4445566655
No 86
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=29.45 E-value=10 Score=41.17 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=26.4
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhhhc
Q 014300 268 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 319 (427)
Q Consensus 268 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----spe~I~kKI~kA 319 (427)
++.|..++.. .+|.- +| +|||||. +|.|+..| .+|.++==+...
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4566555533 24432 56 6999997 68887542 466666555543
No 87
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=27.43 E-value=29 Score=35.73 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=25.4
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhcccccccc-cccceE--EEEEeccc
Q 014300 82 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET--LFFIVDLH 128 (427)
Q Consensus 82 ~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~-Q~~~~~--~i~IaDlh 128 (427)
|+.--|||.+|+||.-+++-.-.-. +++ -.|++| ...|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~-----r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLT-----RLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHH-----HHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHH-----HHHHHcCCceEEEeeeCCcc
Confidence 6788999999999976554321110 111 236775 44577764
No 88
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=25.29 E-value=25 Score=37.39 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=25.8
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhccccccccc-ccceEEE--EEecc
Q 014300 82 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF--FIVDL 127 (427)
Q Consensus 82 ~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q-~~~~~~i--~IaDl 127 (427)
|+|--|+|.+|+||.-+++---. + -+++. .|++|+. -|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~-l----aRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGF-L----ANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHH-H----HHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHH-H----HHHHHHcCCCeeEEEeecCc
Confidence 78999999999999866542110 0 11122 4788754 37774
No 89
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=22.50 E-value=84 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHH
Q 014300 333 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDA 374 (427)
Q Consensus 333 ~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~ 374 (427)
.|..+..++.++. .|.+.+||.++|-++...++..+|+-+
T Consensus 50 TRI~V~~Il~~l~--~G~s~eeIl~~yP~Lt~edI~aAL~Ya 89 (106)
T 2ga1_A 50 TRIPVWTLVAYRQ--QGAPDKELLANYPGLTAEDLSAAWHYY 89 (106)
T ss_dssp SCCBHHHHHHHHH--TTCCHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHH--cCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4555566665433 589999999999889999988877644
No 90
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=22.17 E-value=2.3e+02 Score=26.81 Aligned_cols=83 Identities=13% Similarity=0.223 Sum_probs=57.3
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccc-ceEEEEEeccceecc----CCCHHHHHHHH--------H
Q 014300 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNS-YETLFFIVDLHAITL----PYDTQQLSKAT--------R 144 (427)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~-~~~~i~IaDlhA~t~----~~~~~~l~~~~--------~ 144 (427)
...++.||-|=-.-|=+.++-.+-.|. +.. -+|.|+++|.++--+ ..++.+.+..+ .
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa----------~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~ 98 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA----------VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRR 98 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH----------HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH----------HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 468899999988888888887776665 344 469999999866543 23444333333 3
Q ss_pred HHHHHHHHcCccCCceEEEEcCCcchhh
Q 014300 145 ETAAIYLACGIDNSKASVFVQSHVRAHV 172 (427)
Q Consensus 145 ~~~a~~lA~GiDp~k~~if~QS~v~~~~ 172 (427)
.+...|.++|++++ .++.=||+..+.
T Consensus 99 ~i~ral~~~g~~~~--~v~~~Sd~~~~~ 124 (257)
T 3oqi_A 99 FAEKALEAHGGNPE--DIHTFSDFANQT 124 (257)
T ss_dssp HHHHHHHHHTCCTT--CEEETTTTTTCH
T ss_pred HHHHHHHHcCCCcc--cceeHHHhhcCH
Confidence 45556667899887 677779986443
Done!