BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014302
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 213 QITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 272
QIT + P G+ G PI S+L+++ T +A DGT +W S+
Sbjct: 233 QITEKT--PTGKLIGHHGPI-------SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 273 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 331
+ S + A+W + ++I + GS+ L S+ + LL + + D V +
Sbjct: 284 CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT--------LLALSIVDGVPIFA 335
Query: 332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 391
+I+ D G++ AV++ G + +YD ++ S SL G G NP P+
Sbjct: 336 G----RISQD--GQKYAVAF------MDGQVNVYDLKKLNSKSRSLYGNRDGIL-NPLPI 382
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF---VTGATWDPEGRMILLAFAG 298
+ WSP G+Y +A FD T +W+ N E ++ G V W P G ++
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL------ 120
Query: 299 SLTLGSIHFASKPPSLDAHLLPVDLPD---IVSLTGS--QGIEKIAWDASGERLA-VSYK 352
A+ + VD D VS+ S Q ++ + W S E LA SY
Sbjct: 121 ---------ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 353 GGDDIYK 359
+Y+
Sbjct: 172 DTVKLYR 178
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS 160
D++ V WH + ++A S V + E+ C + V L + P+G R S
Sbjct: 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 161 VGCKGGICIWAPSYPGNAASV 181
+ IW PGN V
Sbjct: 212 CSDDRTVRIWRQYLPGNEQGV 232
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI-LLA 295
G+ + +W P+ D + AK+D T + E E + +G P R I L+A
Sbjct: 280 NGMDVSEWDPSKDKYITAKYDATTAI-EAKALNKEALQAEAGL-------PVDRKIPLIA 331
Query: 296 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL----TGSQGIEKI 338
F G L K P + A +P + + V + TG + EK+
Sbjct: 332 FIGRLE------EQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKL 372
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 258 GSEDNLVYIWNLQTKEI 274
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 204 DFLRSQNGEQITALSWGP-DGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL 262
++L S + +++ + WG DG+F I G+S + WS + +A D T +
Sbjct: 39 EWLASSSADKLIKI-WGAYDGKFE---KTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 263 WETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTLGSIHFASKPPSLDAHLLP 320
W+ ++ + S +V ++P+ +I+ +F S+ + + +L AH P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 321 V 321
V
Sbjct: 155 V 155
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 258 GSEDNLVYIWNLQTKEI 274
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 204 DFLRSQNGEQITALSWGP-DGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL 262
++L S + +++ + WG DG+F I G+S + WS + +A D T +
Sbjct: 39 EWLASSSADKLIKI-WGAYDGKFE---KTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 263 WETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTLGSIHFASKPPSLDAHLLP 320
W+ ++ + S +V ++P+ +I+ +F S+ + + +L AH P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 321 V 321
V
Sbjct: 155 V 155
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 258 GSEDNLVYIWNLQTKEI 274
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 208 SQNGEQITALS-------WGP-DGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259
S NGE + A S WG DG+F I G+S + WS + +A D T
Sbjct: 35 SPNGEWLAASSADKLIKIWGAYDGKFE---KTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTLGSIHFASKPPSLDAH 317
+W+ ++ + S +V ++P+ +I+ +F S+ + + +L AH
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 318 LLPV 321
PV
Sbjct: 152 SDPV 155
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 272 GSEDNLVYIWNLQTKEI 288
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 255 GSEDNLVYIWNLQTKEI 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 256 GSEDNLVYIWNLQTKEI 272
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 255 GSEDNLVYIWNLQTKEI 271
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 277 GSEDNLVYIWNLQTKEI 293
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 251 GSEDNLVYIWNLQTKEI 267
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 261 GSEDNLVYIWNLQTKEI 277
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 261 GSEDNLVYIWNLQTKEI 277
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 254 GSEDNLVYIWNLQTKEI 270
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 260 GSEDNLVYIWNLQTKEI 276
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 279 GSEDNLVYIWNLQTKEI 295
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPE 288
+S +K+SP G Y AA D T LW+ T+T +E + + F VTG W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 289 GRMILLAFAGSLTLGSI 305
G L + +L I
Sbjct: 261 GSEDNLVYIWNLQTKEI 277
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE 264
+S +K+SP G Y AA D T LW+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|2EJX|A Chain A, Crystal Structure Of The Hypothetical Protein St0812 From
Sulfolobus Tokodaii
Length = 139
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA---IYDARR 369
A +P P I S+ + IE ++A G+ LA SYK +YKG+ IYD+ R
Sbjct: 28 AFTIPQIFPGIASI---KCIEPEIFEAEGKFLAFSYKVKGRVYKGVDEVRIIYDSDR 81
>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
Bacillus Thuringiensis At 2.5 Angstroms Resolution
Length = 584
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW 151
A SG T+V Y D +A T DS+R+V + W
Sbjct: 354 AVYSGVTKVEFSQYNDQTDEASTQTYDSKRNVGAVSW 390
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 154 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT--LVDFLRSQNG 211
N R + G KG + +W S+PGN + V S L L+R R L D G
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPV-----SQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 212 EQITALS-WGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 269
+ + LS W P + + L SP F+ DG +W+ + T
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 239 LSILKWSPTGDYFFAAKFDGTFYLWE 264
+S +K+SP G Y AA D LW+
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWD 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,769,849
Number of Sequences: 62578
Number of extensions: 608471
Number of successful extensions: 2011
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 93
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)