Query 014302
Match_columns 427
No_of_seqs 425 out of 3301
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2139 WD40 repeat protein [G 100.0 1.9E-49 4.1E-54 339.3 27.1 407 1-427 1-438 (445)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-32 7.8E-37 237.7 21.4 259 101-418 177-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.8E-31 6.2E-36 229.3 24.6 289 95-418 109-479 (480)
4 KOG0273 Beta-transducin family 100.0 1.7E-29 3.8E-34 223.8 26.4 260 101-421 237-524 (524)
5 KOG0271 Notchless-like WD40 re 100.0 6.2E-30 1.3E-34 221.1 20.5 241 101-366 159-479 (480)
6 KOG0279 G protein beta subunit 100.0 2.7E-28 5.9E-33 202.9 28.0 274 97-420 11-313 (315)
7 KOG0286 G-protein beta subunit 100.0 2.5E-27 5.4E-32 198.4 25.8 271 95-417 49-342 (343)
8 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-29 1.1E-33 218.0 16.4 220 97-366 213-458 (459)
9 KOG0772 Uncharacterized conser 100.0 8.3E-28 1.8E-32 215.3 20.4 282 101-418 169-485 (641)
10 KOG0263 Transcription initiati 100.0 3.5E-28 7.6E-33 228.5 18.6 194 101-369 453-650 (707)
11 KOG0645 WD40 repeat protein [G 100.0 1E-26 2.3E-31 192.7 24.9 266 101-419 16-310 (312)
12 KOG0284 Polyadenylation factor 100.0 3.3E-28 7.1E-33 212.1 15.7 264 99-420 96-380 (464)
13 KOG0263 Transcription initiati 100.0 4.7E-27 1E-31 220.9 21.2 240 101-422 380-651 (707)
14 KOG0293 WD40 repeat-containing 100.0 1.1E-26 2.3E-31 203.0 21.7 274 93-419 216-512 (519)
15 KOG0291 WD40-repeat-containing 100.0 1.9E-26 4E-31 215.3 24.1 239 101-373 352-617 (893)
16 KOG0282 mRNA splicing factor [ 100.0 2.8E-27 6E-32 210.6 17.8 270 93-418 206-503 (503)
17 KOG0318 WD40 repeat stress pro 99.9 1.5E-24 3.3E-29 195.0 29.1 271 101-422 192-562 (603)
18 KOG0266 WD40 repeat-containing 99.9 9.4E-25 2E-29 209.6 28.4 243 101-420 161-409 (456)
19 KOG0279 G protein beta subunit 99.9 5.3E-25 1.2E-29 183.4 22.0 236 95-368 57-313 (315)
20 KOG0285 Pleiotropic regulator 99.9 5.8E-25 1.3E-29 188.9 22.5 270 95-418 145-437 (460)
21 cd00200 WD40 WD40 domain, foun 99.9 3.7E-24 8E-29 193.5 29.2 259 101-418 11-289 (289)
22 KOG2055 WD40 repeat protein [G 99.9 3.4E-25 7.5E-30 196.2 20.5 278 101-420 215-512 (514)
23 KOG0315 G-protein beta subunit 99.9 1.8E-24 3.9E-29 177.4 22.9 224 100-373 41-293 (311)
24 KOG0284 Polyadenylation factor 99.9 6.5E-26 1.4E-30 197.8 13.6 223 101-368 140-380 (464)
25 KOG0265 U5 snRNP-specific prot 99.9 3.7E-24 7.9E-29 180.1 23.6 262 101-416 49-334 (338)
26 KOG0291 WD40-repeat-containing 99.9 1.7E-23 3.7E-28 195.7 30.2 259 100-419 266-549 (893)
27 KOG0315 G-protein beta subunit 99.9 7.1E-24 1.5E-28 173.9 24.1 261 113-422 12-290 (311)
28 KOG0275 Conserved WD40 repeat- 99.9 1E-24 2.3E-29 185.1 17.9 265 101-418 215-507 (508)
29 KOG0645 WD40 repeat protein [G 99.9 1.3E-23 2.8E-28 174.4 22.8 225 101-368 63-311 (312)
30 KOG0286 G-protein beta subunit 99.9 8.4E-24 1.8E-28 177.3 21.4 218 101-366 99-343 (343)
31 PLN00181 protein SPA1-RELATED; 99.9 4E-23 8.6E-28 212.7 31.3 277 100-420 484-793 (793)
32 KOG0318 WD40 repeat stress pro 99.9 2.8E-23 6E-28 186.9 25.2 248 93-375 51-357 (603)
33 PTZ00421 coronin; Provisional 99.9 1.4E-22 2.9E-27 194.1 30.3 215 95-375 69-297 (493)
34 KOG1407 WD40 repeat protein [F 99.9 6.5E-23 1.4E-27 169.4 23.5 260 101-419 22-310 (313)
35 KOG0295 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 181.2 19.9 259 101-418 110-404 (406)
36 KOG0266 WD40 repeat-containing 99.9 6.5E-23 1.4E-27 196.9 26.1 239 101-419 205-453 (456)
37 KOG0973 Histone transcription 99.9 3.3E-23 7.2E-28 201.6 22.6 281 101-419 15-354 (942)
38 KOG0273 Beta-transducin family 99.9 1.8E-22 3.9E-27 179.5 24.2 262 99-420 178-482 (524)
39 KOG0283 WD40 repeat-containing 99.9 3.6E-23 7.8E-28 196.5 20.9 247 101-419 269-575 (712)
40 KOG0316 Conserved WD40 repeat- 99.9 1.5E-22 3.3E-27 164.8 21.0 236 101-420 19-257 (307)
41 KOG0296 Angio-associated migra 99.9 2.6E-22 5.6E-27 173.2 22.1 252 96-419 59-315 (399)
42 KOG0647 mRNA export protein (c 99.9 3.7E-22 8E-27 168.2 22.2 251 100-424 28-285 (347)
43 KOG0276 Vesicle coat complex C 99.9 1.9E-22 4.1E-27 185.1 20.7 233 101-416 57-295 (794)
44 KOG0292 Vesicle coat complex C 99.9 2.9E-22 6.3E-27 190.4 22.5 255 101-415 11-317 (1202)
45 KOG0295 WD40 repeat-containing 99.9 1E-22 2.2E-27 175.6 17.7 223 97-367 146-405 (406)
46 KOG0319 WD40-repeat-containing 99.9 4.3E-22 9.2E-27 186.1 20.3 237 93-367 357-618 (775)
47 KOG0313 Microtubule binding pr 99.9 5E-21 1.1E-25 166.1 22.8 268 96-418 102-416 (423)
48 KOG0319 WD40-repeat-containing 99.9 1.9E-21 4E-26 181.9 21.5 261 101-418 325-617 (775)
49 KOG0640 mRNA cleavage stimulat 99.9 1.6E-21 3.4E-26 165.0 18.0 269 101-418 114-424 (430)
50 PTZ00420 coronin; Provisional 99.9 2.2E-20 4.8E-25 179.9 28.3 229 97-399 70-318 (568)
51 KOG0276 Vesicle coat complex C 99.9 3.1E-21 6.7E-26 177.2 20.7 233 101-418 15-255 (794)
52 PTZ00420 coronin; Provisional 99.9 3.1E-20 6.7E-25 178.9 28.8 239 117-420 50-293 (568)
53 KOG1446 Histone H3 (Lys4) meth 99.9 7.7E-20 1.7E-24 155.6 27.5 245 98-419 13-261 (311)
54 KOG0305 Anaphase promoting com 99.9 6.9E-21 1.5E-25 176.4 22.4 241 101-421 219-462 (484)
55 KOG0310 Conserved WD40 repeat- 99.9 8.6E-21 1.9E-25 169.7 21.9 234 101-417 70-306 (487)
56 KOG0306 WD40-repeat-containing 99.9 4.1E-21 9E-26 179.8 20.4 231 101-372 375-668 (888)
57 KOG0643 Translation initiation 99.9 1.5E-20 3.3E-25 156.0 21.4 238 95-368 4-317 (327)
58 cd00200 WD40 WD40 domain, foun 99.9 3.8E-20 8.2E-25 167.2 25.0 216 101-366 53-289 (289)
59 PLN00181 protein SPA1-RELATED; 99.9 2.5E-20 5.4E-25 192.1 26.7 229 101-367 534-792 (793)
60 KOG1063 RNA polymerase II elon 99.9 2.5E-20 5.4E-25 173.2 23.6 285 95-420 261-699 (764)
61 KOG0288 WD40 repeat protein Ti 99.9 2.7E-21 5.7E-26 169.5 16.1 264 101-417 177-458 (459)
62 PTZ00421 coronin; Provisional 99.9 1.2E-19 2.6E-24 174.0 28.6 250 101-420 22-290 (493)
63 KOG0293 WD40 repeat-containing 99.9 3.6E-21 7.8E-26 168.6 16.1 222 101-369 271-514 (519)
64 KOG1273 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 157.7 19.8 271 101-418 25-320 (405)
65 KOG1407 WD40 repeat protein [F 99.9 3E-20 6.4E-25 153.8 19.0 224 101-368 66-311 (313)
66 KOG0264 Nucleosome remodeling 99.9 8.3E-20 1.8E-24 162.2 22.0 259 95-419 120-403 (422)
67 KOG0294 WD40 repeat-containing 99.9 1.6E-19 3.4E-24 153.4 22.3 237 101-422 45-283 (362)
68 KOG0292 Vesicle coat complex C 99.9 1.1E-19 2.5E-24 173.0 23.4 207 101-350 53-310 (1202)
69 KOG0296 Angio-associated migra 99.9 6.2E-20 1.3E-24 158.6 19.5 217 101-368 108-398 (399)
70 KOG0278 Serine/threonine kinas 99.9 8.2E-20 1.8E-24 150.3 18.5 259 101-419 16-296 (334)
71 KOG0973 Histone transcription 99.9 4.4E-20 9.6E-25 180.0 19.6 225 101-369 71-356 (942)
72 KOG0299 U3 snoRNP-associated p 99.9 1.9E-19 4.1E-24 160.1 21.8 221 101-382 204-429 (479)
73 KOG0264 Nucleosome remodeling 99.9 6.9E-20 1.5E-24 162.7 18.9 211 101-369 179-405 (422)
74 KOG2096 WD40 repeat protein [G 99.8 5.2E-19 1.1E-23 150.4 23.1 301 89-416 74-398 (420)
75 KOG0289 mRNA splicing factor [ 99.8 5.5E-19 1.2E-23 156.0 24.0 220 101-368 221-460 (506)
76 KOG0268 Sof1-like rRNA process 99.8 2.6E-20 5.7E-25 160.7 15.4 281 96-425 61-350 (433)
77 KOG0277 Peroxisomal targeting 99.8 3.9E-20 8.5E-25 152.5 15.5 238 101-418 62-307 (311)
78 KOG0265 U5 snRNP-specific prot 99.8 1.5E-19 3.3E-24 152.4 18.9 214 101-364 92-334 (338)
79 KOG0772 Uncharacterized conser 99.8 1.3E-19 2.8E-24 163.1 19.4 231 98-365 213-484 (641)
80 KOG0650 WD40 repeat nucleolar 99.8 1.9E-19 4.1E-24 164.8 20.5 292 97-418 396-733 (733)
81 KOG1332 Vesicle coat complex C 99.8 8.4E-20 1.8E-24 149.7 16.0 228 101-369 13-287 (299)
82 KOG1274 WD40 repeat protein [G 99.8 5.2E-19 1.1E-23 169.4 23.2 259 101-421 15-301 (933)
83 KOG0302 Ribosome Assembly prot 99.8 4.7E-19 1E-23 153.8 20.8 242 111-421 165-440 (440)
84 KOG0278 Serine/threonine kinas 99.8 7.6E-20 1.6E-24 150.4 15.1 204 98-373 99-302 (334)
85 KOG0316 Conserved WD40 repeat- 99.8 9.3E-19 2E-23 142.9 21.1 227 99-408 59-288 (307)
86 KOG1036 Mitotic spindle checkp 99.8 2.2E-18 4.9E-23 146.1 23.1 235 101-410 15-294 (323)
87 KOG0283 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 170.2 19.7 251 141-419 265-531 (712)
88 KOG1446 Histone H3 (Lys4) meth 99.8 7.8E-18 1.7E-22 143.4 25.8 234 101-418 58-301 (311)
89 KOG0281 Beta-TrCP (transducin 99.8 1.3E-19 2.8E-24 155.7 14.4 256 101-420 199-477 (499)
90 KOG0281 Beta-TrCP (transducin 99.8 1.3E-19 2.8E-24 155.7 13.7 211 142-421 196-429 (499)
91 KOG0646 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 156.6 18.9 223 101-374 83-313 (476)
92 KOG1408 WD40 repeat protein [F 99.8 1.8E-18 3.9E-23 161.4 21.1 171 236-421 459-672 (1080)
93 KOG0282 mRNA splicing factor [ 99.8 1.8E-19 3.9E-24 161.1 14.0 282 25-366 168-503 (503)
94 KOG0289 mRNA splicing factor [ 99.8 2.5E-18 5.4E-23 151.9 20.6 220 101-367 263-505 (506)
95 KOG0306 WD40-repeat-containing 99.8 5.4E-18 1.2E-22 159.2 23.7 257 101-418 322-620 (888)
96 KOG0270 WD40 repeat-containing 99.8 2.8E-18 6.2E-23 152.0 20.3 243 103-420 177-449 (463)
97 KOG0310 Conserved WD40 repeat- 99.8 3.6E-18 7.8E-23 153.1 21.1 235 101-418 28-266 (487)
98 KOG4283 Transcription-coupled 99.8 8.2E-18 1.8E-22 141.7 21.7 217 97-372 41-280 (397)
99 KOG0641 WD40 repeat protein [G 99.8 3.3E-17 7.2E-22 133.1 24.0 244 101-419 91-348 (350)
100 KOG0313 Microtubule binding pr 99.8 3.9E-18 8.4E-23 148.3 19.5 247 101-367 146-417 (423)
101 KOG1408 WD40 repeat protein [F 99.8 1.5E-18 3.2E-23 162.0 18.0 221 101-369 461-714 (1080)
102 KOG4328 WD40 protein [Function 99.8 3.8E-18 8.3E-23 151.7 19.5 272 101-418 188-493 (498)
103 KOG1539 WD repeat protein [Gen 99.8 4.9E-17 1.1E-21 154.5 27.7 296 101-418 204-646 (910)
104 KOG0269 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 163.2 16.9 203 101-370 89-298 (839)
105 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.8E-17 1.2E-21 148.4 26.7 227 101-375 32-286 (300)
106 KOG0275 Conserved WD40 repeat- 99.8 9.4E-19 2E-23 149.1 13.3 211 137-419 207-422 (508)
107 KOG0277 Peroxisomal targeting 99.8 8.1E-18 1.8E-22 138.9 18.1 245 102-423 11-268 (311)
108 KOG0305 Anaphase promoting com 99.8 1.2E-17 2.6E-22 155.1 21.4 239 99-419 177-418 (484)
109 KOG0639 Transducin-like enhanc 99.8 4.6E-18 1E-22 152.8 16.3 241 99-421 465-705 (705)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6E-16 1.3E-20 141.6 29.1 256 111-419 1-278 (300)
111 KOG0307 Vesicle coat complex C 99.8 4.7E-18 1E-22 166.8 14.9 248 100-425 65-332 (1049)
112 KOG0300 WD40 repeat-containing 99.8 5.3E-17 1.2E-21 138.2 18.8 273 96-419 143-427 (481)
113 KOG2919 Guanine nucleotide-bin 99.8 1.5E-16 3.1E-21 135.9 21.5 261 102-414 52-363 (406)
114 KOG0274 Cdc4 and related F-box 99.8 1.4E-16 3E-21 153.2 24.1 231 97-420 245-482 (537)
115 KOG0640 mRNA cleavage stimulat 99.8 1.5E-17 3.2E-22 141.1 14.9 231 97-368 168-426 (430)
116 KOG1538 Uncharacterized conser 99.8 1.4E-16 3E-21 148.0 21.5 266 96-424 9-297 (1081)
117 KOG0269 WD40 repeat-containing 99.8 1.6E-17 3.5E-22 156.5 15.3 187 101-350 135-328 (839)
118 KOG0285 Pleiotropic regulator 99.7 1.2E-16 2.7E-21 138.0 18.4 227 101-368 195-439 (460)
119 KOG0301 Phospholipase A2-activ 99.7 4.7E-16 1E-20 145.1 23.0 258 97-419 10-287 (745)
120 KOG0308 Conserved WD40 repeat- 99.7 5E-17 1.1E-21 150.5 16.1 224 104-370 29-287 (735)
121 KOG0302 Ribosome Assembly prot 99.7 7.1E-17 1.5E-21 140.4 16.0 197 101-349 213-425 (440)
122 KOG0288 WD40 repeat protein Ti 99.7 5.9E-17 1.3E-21 142.4 15.1 232 101-365 221-458 (459)
123 KOG1009 Chromatin assembly com 99.7 2.8E-16 6E-21 138.0 18.6 162 101-299 15-187 (434)
124 KOG0267 Microtubule severing p 99.7 1.2E-17 2.7E-22 156.2 10.7 216 101-398 30-249 (825)
125 KOG0321 WD40 repeat-containing 99.7 3.5E-16 7.5E-21 144.7 19.7 269 101-419 102-390 (720)
126 KOG0299 U3 snoRNP-associated p 99.7 3.5E-16 7.5E-21 139.5 18.6 242 101-418 144-408 (479)
127 KOG1445 Tumor-specific antigen 99.7 1.6E-16 3.5E-21 146.7 16.7 238 96-400 624-872 (1012)
128 KOG4378 Nuclear protein COP1 [ 99.7 2.4E-16 5.3E-21 141.6 17.3 248 99-398 34-304 (673)
129 KOG2445 Nuclear pore complex c 99.7 2.3E-15 5E-20 127.8 22.3 247 101-372 15-322 (361)
130 KOG0270 WD40 repeat-containing 99.7 4.9E-16 1.1E-20 137.9 17.9 204 101-373 245-454 (463)
131 KOG2055 WD40 repeat protein [G 99.7 2.2E-16 4.8E-21 140.7 15.6 200 101-368 305-512 (514)
132 KOG0641 WD40 repeat protein [G 99.7 2E-15 4.3E-20 122.8 19.7 216 142-420 31-261 (350)
133 KOG0643 Translation initiation 99.7 1.7E-15 3.7E-20 126.2 19.5 211 137-419 4-219 (327)
134 KOG1445 Tumor-specific antigen 99.7 3.2E-16 6.9E-21 144.8 16.6 255 106-424 586-848 (1012)
135 KOG2106 Uncharacterized conser 99.7 1.4E-14 3E-19 130.7 25.2 290 101-419 248-580 (626)
136 KOG0303 Actin-binding protein 99.7 5.1E-15 1.1E-19 129.7 20.5 216 92-372 72-298 (472)
137 KOG2096 WD40 repeat protein [G 99.7 3.8E-15 8.2E-20 127.1 18.9 237 139-418 82-358 (420)
138 KOG2106 Uncharacterized conser 99.7 2.5E-14 5.5E-19 129.1 23.7 261 101-420 156-477 (626)
139 KOG0267 Microtubule severing p 99.7 8.1E-17 1.8E-21 150.8 7.9 186 97-349 66-255 (825)
140 KOG0771 Prolactin regulatory e 99.7 1.6E-15 3.5E-20 134.1 15.5 191 103-299 148-346 (398)
141 KOG1063 RNA polymerase II elon 99.7 2.7E-15 5.7E-20 140.1 17.7 226 85-368 510-763 (764)
142 PRK11028 6-phosphogluconolacto 99.7 2.9E-13 6.2E-18 125.8 31.3 260 101-422 36-306 (330)
143 KOG0290 Conserved WD40 repeat- 99.7 1.1E-14 2.4E-19 122.9 19.2 268 101-411 46-357 (364)
144 KOG2048 WD40 repeat protein [G 99.7 2.1E-14 4.5E-19 134.0 22.9 243 101-418 27-273 (691)
145 KOG4283 Transcription-coupled 99.7 7.8E-15 1.7E-19 123.9 18.3 158 101-313 103-281 (397)
146 KOG0294 WD40 repeat-containing 99.7 2E-14 4.2E-19 122.7 19.8 193 101-370 85-283 (362)
147 KOG0300 WD40 repeat-containing 99.7 5.9E-15 1.3E-19 125.8 16.2 204 101-375 192-435 (481)
148 KOG0274 Cdc4 and related F-box 99.7 1.5E-14 3.2E-19 139.3 21.0 227 99-419 208-440 (537)
149 KOG1523 Actin-related protein 99.7 4.6E-14 1E-18 120.7 21.4 215 101-370 12-238 (361)
150 KOG0639 Transducin-like enhanc 99.7 1.9E-15 4.1E-20 136.2 13.5 193 101-367 511-703 (705)
151 KOG1539 WD repeat protein [Gen 99.6 8.5E-15 1.8E-19 139.5 18.4 197 100-369 449-649 (910)
152 KOG1524 WD40 repeat-containing 99.6 5E-15 1.1E-19 134.5 15.6 182 112-349 76-273 (737)
153 KOG0322 G-protein beta subunit 99.6 2.1E-14 4.7E-19 119.5 17.5 283 96-420 9-323 (323)
154 KOG0268 Sof1-like rRNA process 99.6 2.6E-15 5.7E-20 130.1 12.4 196 102-371 150-348 (433)
155 KOG1273 WD40 repeat protein [G 99.6 3.6E-14 7.9E-19 121.0 18.2 200 146-420 26-226 (405)
156 KOG1332 Vesicle coat complex C 99.6 1.9E-14 4.1E-19 118.6 15.8 186 97-306 52-284 (299)
157 KOG4497 Uncharacterized conser 99.6 6E-14 1.3E-18 120.4 19.4 71 101-173 50-122 (447)
158 KOG0308 Conserved WD40 repeat- 99.6 1.6E-14 3.4E-19 134.2 17.0 193 101-310 75-287 (735)
159 KOG0647 mRNA export protein (c 99.6 2.7E-13 5.8E-18 115.1 22.9 204 100-372 73-285 (347)
160 KOG2048 WD40 repeat protein [G 99.6 1.1E-13 2.5E-18 129.2 21.7 211 142-423 24-236 (691)
161 KOG4497 Uncharacterized conser 99.6 5.3E-14 1.1E-18 120.7 17.3 252 101-412 93-424 (447)
162 PF08662 eIF2A: Eukaryotic tra 99.6 9.9E-14 2.1E-18 117.3 18.8 141 103-298 9-164 (194)
163 KOG1274 WD40 repeat protein [G 99.6 3E-13 6.6E-18 130.5 23.8 249 138-419 8-261 (933)
164 KOG4378 Nuclear protein COP1 [ 99.6 1.7E-13 3.8E-18 123.5 20.8 253 116-420 7-280 (673)
165 KOG1034 Transcriptional repres 99.6 3.5E-14 7.7E-19 121.7 15.7 252 101-418 91-381 (385)
166 KOG2919 Guanine nucleotide-bin 99.6 3.9E-14 8.4E-19 121.3 15.8 219 101-350 106-358 (406)
167 PRK01742 tolB translocation pr 99.6 3.1E-13 6.7E-18 129.6 23.7 213 120-420 183-401 (429)
168 KOG1538 Uncharacterized conser 99.6 1.3E-14 2.8E-19 135.0 13.5 220 97-369 49-294 (1081)
169 KOG0646 WD40 repeat protein [G 99.6 1.9E-13 4.2E-18 122.4 20.3 233 112-421 51-308 (476)
170 KOG1007 WD repeat protein TSSC 99.6 2.4E-13 5.1E-18 114.8 19.1 210 101-367 125-360 (370)
171 KOG0650 WD40 repeat nucleolar 99.6 8.3E-14 1.8E-18 128.3 17.5 234 135-425 392-685 (733)
172 PRK01742 tolB translocation pr 99.6 1.9E-13 4.2E-18 131.0 21.0 180 101-351 205-390 (429)
173 KOG0301 Phospholipase A2-activ 99.6 1.2E-13 2.6E-18 129.3 18.3 209 105-368 64-288 (745)
174 KOG1007 WD repeat protein TSSC 99.6 5.3E-13 1.1E-17 112.7 20.1 221 113-369 28-290 (370)
175 KOG1034 Transcriptional repres 99.6 4.6E-14 9.9E-19 121.1 13.6 202 101-307 137-382 (385)
176 PRK11028 6-phosphogluconolacto 99.6 9.2E-12 2E-16 115.7 30.3 242 115-419 6-257 (330)
177 PRK05137 tolB translocation pr 99.6 4.8E-13 1E-17 128.7 22.3 204 101-373 203-417 (435)
178 KOG0321 WD40 repeat-containing 99.6 1.5E-13 3.2E-18 127.5 17.7 252 105-419 55-346 (720)
179 KOG0307 Vesicle coat complex C 99.6 2.2E-14 4.9E-19 141.4 12.1 205 101-371 118-330 (1049)
180 KOG1587 Cytoplasmic dynein int 99.6 8.8E-13 1.9E-17 126.3 22.3 239 101-369 244-517 (555)
181 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 124.6 23.7 201 101-373 200-411 (429)
182 PRK02889 tolB translocation pr 99.5 1.3E-12 2.8E-17 125.2 23.1 199 101-369 197-404 (427)
183 PRK04922 tolB translocation pr 99.5 1.3E-12 2.8E-17 125.6 22.7 200 101-372 205-415 (433)
184 KOG0642 Cell-cycle nuclear pro 99.5 2.2E-13 4.8E-18 124.8 15.9 129 101-270 296-430 (577)
185 KOG0303 Actin-binding protein 99.5 1.2E-12 2.6E-17 115.1 19.3 255 98-419 26-293 (472)
186 KOG2110 Uncharacterized conser 99.5 3.3E-12 7.1E-17 111.5 21.4 195 101-369 48-249 (391)
187 KOG2394 WD40 protein DMR-N9 [G 99.5 5.1E-13 1.1E-17 121.7 16.7 183 101-310 175-364 (636)
188 KOG1036 Mitotic spindle checkp 99.5 2.1E-12 4.6E-17 110.1 19.3 211 97-351 52-293 (323)
189 KOG1517 Guanine nucleotide bin 99.5 1.9E-12 4E-17 126.8 21.0 248 101-418 1111-1379(1387)
190 PRK05137 tolB translocation pr 99.5 1.4E-11 3E-16 118.7 26.9 181 122-373 183-371 (435)
191 PRK03629 tolB translocation pr 99.5 1.5E-11 3.2E-16 117.8 25.6 209 122-413 180-396 (429)
192 KOG1310 WD40 repeat protein [G 99.5 8.7E-13 1.9E-17 120.5 15.4 230 95-372 44-307 (758)
193 KOG1963 WD40 repeat protein [G 99.5 1.3E-11 2.7E-16 119.1 23.8 274 101-419 207-537 (792)
194 KOG4227 WD40 repeat protein [G 99.5 3.7E-12 8.1E-17 111.9 18.3 252 101-421 58-323 (609)
195 KOG4328 WD40 protein [Function 99.5 3.4E-12 7.5E-17 114.2 18.4 239 140-418 183-448 (498)
196 KOG1009 Chromatin assembly com 99.5 1.7E-12 3.7E-17 114.5 15.8 74 101-174 67-154 (434)
197 PRK02889 tolB translocation pr 99.5 2.6E-11 5.6E-16 116.2 25.6 183 122-375 177-367 (427)
198 KOG1188 WD40 repeat protein [G 99.5 5.4E-12 1.2E-16 109.1 18.3 173 112-310 41-244 (376)
199 KOG2139 WD40 repeat protein [G 99.5 7E-12 1.5E-16 109.2 18.8 223 142-413 97-368 (445)
200 PRK04922 tolB translocation pr 99.5 1.5E-11 3.2E-16 118.3 23.1 184 121-375 184-375 (433)
201 PF08662 eIF2A: Eukaryotic tra 99.5 6.1E-12 1.3E-16 106.5 17.9 120 237-372 60-183 (194)
202 KOG1587 Cytoplasmic dynein int 99.5 5.2E-11 1.1E-15 114.3 25.4 267 101-419 182-515 (555)
203 KOG0649 WD40 repeat protein [G 99.4 3.4E-11 7.4E-16 99.5 19.9 217 101-375 12-242 (325)
204 KOG2445 Nuclear pore complex c 99.4 5.8E-11 1.3E-15 101.4 20.3 245 138-422 8-320 (361)
205 TIGR02800 propeller_TolB tol-p 99.4 4.3E-11 9.2E-16 115.1 22.3 198 101-370 191-399 (417)
206 PRK04792 tolB translocation pr 99.4 4.6E-11 9.9E-16 114.9 22.2 199 101-371 219-428 (448)
207 PRK00178 tolB translocation pr 99.4 1.1E-10 2.3E-15 112.6 23.6 200 101-372 200-410 (430)
208 PF10282 Lactonase: Lactonase, 99.4 1.1E-09 2.3E-14 102.2 29.4 267 101-419 38-321 (345)
209 KOG1523 Actin-related protein 99.4 1.8E-11 3.9E-16 105.1 15.4 178 94-294 48-266 (361)
210 KOG2110 Uncharacterized conser 99.4 4.3E-10 9.2E-15 98.6 23.2 234 101-420 7-248 (391)
211 PRK01029 tolB translocation pr 99.4 1.5E-10 3.3E-15 110.5 22.4 119 240-375 284-410 (428)
212 PF10282 Lactonase: Lactonase, 99.4 2.2E-09 4.7E-14 100.0 29.3 229 101-395 88-345 (345)
213 KOG1524 WD40 repeat-containing 99.4 2.7E-11 5.7E-16 110.7 15.6 204 141-374 12-222 (737)
214 KOG0644 Uncharacterized conser 99.4 4.8E-12 1E-16 121.1 11.0 199 101-375 192-433 (1113)
215 KOG2111 Uncharacterized conser 99.3 1.1E-09 2.4E-14 94.2 23.2 179 121-369 75-257 (346)
216 COG2319 FOG: WD40 repeat [Gene 99.3 2E-09 4.4E-14 102.6 28.1 241 101-420 67-314 (466)
217 KOG1334 WD40 repeat protein [G 99.3 3.2E-11 7E-16 109.0 13.9 275 101-419 144-465 (559)
218 PF04762 IKI3: IKI3 family; I 99.3 1.1E-09 2.4E-14 112.9 27.2 282 98-423 74-382 (928)
219 KOG2111 Uncharacterized conser 99.3 1.7E-09 3.7E-14 93.1 23.5 236 102-420 8-256 (346)
220 COG2706 3-carboxymuconate cycl 99.3 3.7E-09 8E-14 92.9 26.0 232 98-396 87-345 (346)
221 KOG0290 Conserved WD40 repeat- 99.3 2.8E-10 6.1E-15 96.5 18.3 197 101-353 152-357 (364)
222 PRK04792 tolB translocation pr 99.3 9.6E-10 2.1E-14 105.9 24.2 118 240-373 265-387 (448)
223 TIGR02800 propeller_TolB tol-p 99.3 1.9E-09 4.2E-14 103.6 25.6 181 122-373 171-359 (417)
224 COG2319 FOG: WD40 repeat [Gene 99.3 3.5E-09 7.5E-14 101.0 27.3 240 101-421 111-360 (466)
225 KOG1272 WD40-repeat-containing 99.3 1.9E-11 4.1E-16 109.8 10.1 255 101-416 131-405 (545)
226 KOG0322 G-protein beta subunit 99.3 1E-10 2.2E-15 97.9 13.3 161 100-308 151-323 (323)
227 PRK00178 tolB translocation pr 99.3 2E-09 4.3E-14 103.9 24.2 183 122-375 180-370 (430)
228 KOG1310 WD40 repeat protein [G 99.3 2.3E-10 4.9E-15 105.0 15.8 224 138-423 45-306 (758)
229 PRK01029 tolB translocation pr 99.3 4.1E-09 8.9E-14 100.7 25.3 123 239-376 233-367 (428)
230 KOG0771 Prolactin regulatory e 99.3 3.4E-10 7.4E-15 100.8 16.3 195 147-418 148-352 (398)
231 KOG1188 WD40 repeat protein [G 99.2 5.3E-10 1.1E-14 97.0 16.6 229 101-368 72-346 (376)
232 KOG2394 WD40 protein DMR-N9 [G 99.2 6E-11 1.3E-15 108.5 11.4 137 100-287 220-384 (636)
233 PRK04043 tolB translocation pr 99.2 3.7E-09 8.1E-14 100.4 23.7 199 101-373 189-405 (419)
234 KOG2321 WD40 repeat protein [G 99.2 3E-09 6.5E-14 98.4 21.3 270 101-419 53-342 (703)
235 KOG1963 WD40 repeat protein [G 99.2 7.8E-09 1.7E-13 100.2 24.9 212 103-373 164-380 (792)
236 COG2706 3-carboxymuconate cycl 99.2 1.1E-07 2.4E-12 83.8 29.8 265 101-418 41-319 (346)
237 KOG1517 Guanine nucleotide bin 99.2 3.8E-09 8.2E-14 104.2 20.4 252 101-419 1066-1332(1387)
238 KOG0642 Cell-cycle nuclear pro 99.2 1.5E-09 3.2E-14 100.1 16.7 220 140-419 291-560 (577)
239 KOG1240 Protein kinase contain 99.2 2.1E-08 4.6E-13 100.6 25.1 262 101-422 1050-1336(1431)
240 PF02239 Cytochrom_D1: Cytochr 99.1 1.6E-08 3.5E-13 94.3 22.5 257 104-418 41-345 (369)
241 KOG2041 WD40 repeat protein [G 99.1 3.1E-09 6.7E-14 100.7 16.9 268 100-419 15-336 (1189)
242 KOG0644 Uncharacterized conser 99.1 5.5E-10 1.2E-14 107.3 11.0 223 101-369 234-469 (1113)
243 PRK04043 tolB translocation pr 99.1 7.1E-08 1.5E-12 91.7 25.4 124 239-377 235-366 (419)
244 PF02239 Cytochrom_D1: Cytochr 99.1 3E-08 6.5E-13 92.5 22.4 195 112-376 6-210 (369)
245 KOG3881 Uncharacterized conser 99.1 1.1E-08 2.5E-13 90.4 17.6 210 101-373 107-325 (412)
246 KOG1354 Serine/threonine prote 99.1 2.3E-08 5.1E-13 87.1 19.1 260 101-370 27-361 (433)
247 KOG2315 Predicted translation 99.0 9.1E-08 2E-12 88.6 21.0 258 101-418 75-388 (566)
248 KOG2314 Translation initiation 99.0 2.4E-07 5.1E-12 85.8 23.2 260 101-412 251-559 (698)
249 KOG4227 WD40 repeat protein [G 99.0 8.1E-09 1.8E-13 91.2 13.1 172 140-371 53-228 (609)
250 KOG2314 Translation initiation 99.0 1.2E-07 2.5E-12 87.7 20.4 271 101-422 212-527 (698)
251 KOG0974 WD-repeat protein WDR6 99.0 4.5E-08 9.7E-13 96.8 17.9 191 103-370 91-290 (967)
252 KOG2315 Predicted translation 99.0 9.3E-08 2E-12 88.5 18.9 226 103-371 129-393 (566)
253 KOG0649 WD40 repeat protein [G 99.0 1.8E-07 3.8E-12 77.9 18.6 159 101-309 116-275 (325)
254 KOG1920 IkappaB kinase complex 98.9 4.1E-07 9E-12 91.7 24.4 279 101-424 70-369 (1265)
255 KOG1240 Protein kinase contain 98.9 1.6E-07 3.4E-12 94.5 21.4 218 135-419 1040-1272(1431)
256 PF04762 IKI3: IKI3 family; I 98.9 2.4E-07 5.1E-12 96.0 22.6 252 101-423 122-459 (928)
257 KOG4547 WD40 repeat-containing 98.9 2.3E-07 4.9E-12 86.6 19.5 113 235-369 101-221 (541)
258 KOG1272 WD40-repeat-containing 98.9 7.2E-09 1.6E-13 93.5 8.9 189 101-353 211-400 (545)
259 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.8E-06 3.9E-11 79.0 24.2 226 107-373 53-335 (352)
260 PLN02919 haloacid dehalogenase 98.9 3E-06 6.4E-11 89.6 28.5 271 103-419 571-887 (1057)
261 COG4946 Uncharacterized protei 98.8 8.3E-07 1.8E-11 80.8 19.9 127 235-376 358-485 (668)
262 COG5354 Uncharacterized protei 98.8 8.9E-07 1.9E-11 81.3 19.2 222 101-370 34-308 (561)
263 COG5354 Uncharacterized protei 98.8 4.7E-06 1E-10 76.7 23.7 265 101-422 73-397 (561)
264 COG5170 CDC55 Serine/threonine 98.8 5.9E-08 1.3E-12 83.5 10.8 248 101-369 28-310 (460)
265 KOG1409 Uncharacterized conser 98.8 1.6E-06 3.4E-11 75.9 18.6 201 98-309 67-271 (404)
266 PF08450 SGL: SMP-30/Gluconola 98.7 2E-05 4.4E-10 69.8 26.3 220 104-396 4-233 (246)
267 PF15492 Nbas_N: Neuroblastoma 98.7 1.7E-05 3.7E-10 68.3 23.7 216 105-373 3-264 (282)
268 KOG2041 WD40 repeat protein [G 98.7 8E-07 1.7E-11 84.8 16.2 219 95-350 65-326 (1189)
269 KOG0280 Uncharacterized conser 98.7 5.8E-07 1.3E-11 77.0 13.4 140 102-290 124-266 (339)
270 KOG2321 WD40 repeat protein [G 98.7 1.8E-06 3.9E-11 80.4 17.4 193 140-373 48-263 (703)
271 PLN02919 haloacid dehalogenase 98.7 7.8E-06 1.7E-10 86.5 24.3 222 102-372 626-892 (1057)
272 COG0823 TolB Periplasmic compo 98.6 5.3E-06 1.2E-10 78.5 20.3 162 239-416 240-407 (425)
273 KOG4532 WD40-like repeat conta 98.6 5.9E-06 1.3E-10 70.1 17.5 197 113-371 130-334 (344)
274 KOG1354 Serine/threonine prote 98.6 1.2E-06 2.5E-11 76.7 12.9 184 101-308 86-359 (433)
275 KOG3881 Uncharacterized conser 98.6 1.2E-05 2.6E-10 71.7 18.8 241 101-419 57-319 (412)
276 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.0002 4.4E-09 65.8 27.0 120 284-419 200-329 (352)
277 COG4946 Uncharacterized protei 98.5 7.6E-06 1.6E-10 74.7 16.1 142 101-297 361-508 (668)
278 KOG1334 WD40 repeat protein [G 98.5 3.7E-06 8E-11 76.9 13.7 240 139-418 138-422 (559)
279 KOG0974 WD-repeat protein WDR6 98.5 2.5E-06 5.4E-11 84.8 13.3 152 103-309 137-289 (967)
280 KOG1912 WD40 repeat protein [G 98.4 6.6E-05 1.4E-09 72.8 21.5 250 101-418 17-302 (1062)
281 KOG4547 WD40 repeat-containing 98.4 5.3E-06 1.2E-10 77.7 14.0 147 110-309 69-221 (541)
282 COG0823 TolB Periplasmic compo 98.4 5.7E-06 1.2E-10 78.4 14.3 186 101-350 194-387 (425)
283 PF15492 Nbas_N: Neuroblastoma 98.4 0.00018 3.9E-09 62.0 21.6 172 238-420 45-259 (282)
284 KOG1064 RAVE (regulator of V-A 98.4 2E-06 4.3E-11 90.0 11.1 171 101-310 2210-2400(2439)
285 PF07433 DUF1513: Protein of u 98.3 0.00029 6.3E-09 62.6 21.9 225 103-376 8-255 (305)
286 KOG3914 WD repeat protein WDR4 98.3 1.8E-05 3.8E-10 70.9 14.0 157 101-311 64-226 (390)
287 KOG1832 HIV-1 Vpr-binding prot 98.3 8.2E-07 1.8E-11 86.7 5.4 186 101-372 1103-1295(1516)
288 KOG3914 WD repeat protein WDR4 98.3 1.5E-05 3.3E-10 71.4 12.2 113 242-373 113-228 (390)
289 PF00400 WD40: WD domain, G-be 98.3 2.9E-06 6.4E-11 51.1 5.5 34 231-264 6-39 (39)
290 KOG1409 Uncharacterized conser 98.3 9.2E-05 2E-09 65.2 16.5 243 101-419 26-269 (404)
291 PF08450 SGL: SMP-30/Gluconola 98.2 0.001 2.2E-08 58.9 22.5 156 239-418 42-211 (246)
292 KOG4532 WD40-like repeat conta 98.2 9.2E-05 2E-09 63.0 14.2 149 101-296 160-321 (344)
293 KOG2695 WD40 repeat protein [G 98.1 8.4E-06 1.8E-10 71.5 6.2 125 101-271 254-381 (425)
294 KOG1008 Uncharacterized conser 98.1 8.8E-06 1.9E-10 77.1 6.5 210 101-369 58-276 (783)
295 KOG1912 WD40 repeat protein [G 98.0 0.00012 2.5E-09 71.2 14.0 72 100-173 56-143 (1062)
296 KOG2066 Vacuolar assembly/sort 98.0 8.5E-05 1.8E-09 72.4 13.0 140 247-412 82-226 (846)
297 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00077 1.7E-08 63.1 19.5 236 101-354 44-349 (353)
298 KOG0309 Conserved WD40 repeat- 98.0 1.8E-05 4E-10 76.1 7.8 199 100-368 25-232 (1081)
299 KOG2114 Vacuolar assembly/sort 98.0 0.0036 7.7E-08 62.0 22.7 202 106-369 30-244 (933)
300 KOG4190 Uncharacterized conser 98.0 1.9E-05 4.2E-10 73.5 6.8 179 137-374 729-912 (1034)
301 KOG1645 RING-finger-containing 97.9 0.001 2.2E-08 60.0 17.1 71 101-174 195-267 (463)
302 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0069 1.5E-07 56.7 24.0 261 108-410 1-347 (353)
303 PF07433 DUF1513: Protein of u 97.9 0.00097 2.1E-08 59.3 16.9 191 93-294 48-273 (305)
304 PF11768 DUF3312: Protein of u 97.9 0.00027 5.8E-09 67.1 14.0 68 101-173 261-329 (545)
305 KOG4714 Nucleoporin [Nuclear s 97.9 0.0003 6.4E-09 59.8 12.8 71 238-309 181-255 (319)
306 KOG2066 Vacuolar assembly/sort 97.9 0.001 2.2E-08 65.3 18.0 142 109-308 81-233 (846)
307 PF00400 WD40: WD domain, G-be 97.9 2.7E-05 5.9E-10 46.7 5.0 37 135-171 3-39 (39)
308 COG5170 CDC55 Serine/threonine 97.9 6.2E-05 1.3E-09 65.3 8.5 164 101-310 87-311 (460)
309 KOG0309 Conserved WD40 repeat- 97.9 7.7E-05 1.7E-09 72.0 9.1 145 97-292 110-260 (1081)
310 KOG0280 Uncharacterized conser 97.8 0.0012 2.6E-08 57.1 15.2 198 101-370 71-286 (339)
311 KOG4190 Uncharacterized conser 97.8 7.2E-05 1.6E-09 69.8 8.3 159 101-309 737-907 (1034)
312 KOG1920 IkappaB kinase complex 97.8 0.0048 1E-07 63.4 20.8 121 279-419 197-321 (1265)
313 KOG3617 WD40 and TPR repeat-co 97.6 0.00063 1.4E-08 67.0 11.8 70 101-173 61-131 (1416)
314 KOG1064 RAVE (regulator of V-A 97.6 0.00048 1E-08 73.1 11.2 165 142-373 2207-2371(2439)
315 KOG4714 Nucleoporin [Nuclear s 97.6 0.00032 7E-09 59.5 7.8 72 101-173 181-254 (319)
316 KOG0882 Cyclophilin-related pe 97.6 0.00068 1.5E-08 62.0 10.3 207 109-374 18-237 (558)
317 PRK02888 nitrous-oxide reducta 97.6 0.0056 1.2E-07 59.8 16.9 171 241-419 197-403 (635)
318 PF11768 DUF3312: Protein of u 97.5 0.00029 6.4E-09 66.8 7.9 78 327-422 254-331 (545)
319 PRK02888 nitrous-oxide reducta 97.5 0.0025 5.5E-08 62.1 13.9 116 245-369 285-405 (635)
320 PF02897 Peptidase_S9_N: Proly 97.4 0.078 1.7E-06 50.9 23.6 61 101-164 125-190 (414)
321 PRK13616 lipoprotein LpqB; Pro 97.4 0.021 4.6E-07 56.8 19.9 164 100-310 350-529 (591)
322 PRK13616 lipoprotein LpqB; Pro 97.4 0.0065 1.4E-07 60.4 16.1 165 238-422 351-527 (591)
323 KOG0882 Cyclophilin-related pe 97.4 0.02 4.4E-07 52.7 17.4 259 101-421 55-373 (558)
324 KOG2695 WD40 repeat protein [G 97.4 0.00071 1.5E-08 59.8 7.5 126 236-380 252-388 (425)
325 COG3490 Uncharacterized protei 97.3 0.057 1.2E-06 47.1 18.2 120 275-420 223-348 (366)
326 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.022 4.9E-07 42.4 12.8 67 333-416 43-110 (111)
327 PF15390 DUF4613: Domain of un 97.2 0.013 2.7E-07 56.1 14.2 161 100-310 20-188 (671)
328 KOG1275 PAB-dependent poly(A) 97.2 0.012 2.5E-07 58.9 14.0 191 110-373 146-347 (1118)
329 KOG3621 WD40 repeat-containing 97.1 0.0065 1.4E-07 59.0 12.0 119 101-267 35-155 (726)
330 PF06977 SdiA-regulated: SdiA- 97.1 0.17 3.7E-06 44.4 20.9 200 101-349 23-238 (248)
331 KOG3617 WD40 and TPR repeat-co 97.1 0.0021 4.5E-08 63.5 8.0 107 104-266 20-131 (1416)
332 PF06977 SdiA-regulated: SdiA- 97.0 0.04 8.7E-07 48.3 14.8 175 231-417 16-198 (248)
333 PF15390 DUF4613: Domain of un 97.0 0.021 4.5E-07 54.7 13.5 143 211-372 19-190 (671)
334 KOG3621 WD40 repeat-containing 97.0 0.0077 1.7E-07 58.5 10.7 119 238-369 35-155 (726)
335 KOG1645 RING-finger-containing 97.0 0.0029 6.4E-08 57.2 7.3 80 232-311 189-269 (463)
336 PF04053 Coatomer_WDAD: Coatom 96.8 0.016 3.5E-07 55.5 11.3 135 101-302 34-169 (443)
337 KOG4640 Anaphase-promoting com 96.7 0.0074 1.6E-07 57.9 8.5 69 101-173 22-92 (665)
338 smart00320 WD40 WD40 repeats. 96.7 0.0033 7.3E-08 36.4 4.4 33 232-264 8-40 (40)
339 PF10647 Gmad1: Lipoprotein Lp 96.7 0.18 4E-06 44.6 16.7 157 238-412 25-187 (253)
340 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0059 1.3E-07 38.0 4.9 29 101-129 13-41 (47)
341 PF13360 PQQ_2: PQQ-like domai 96.5 0.22 4.7E-06 43.5 16.3 61 109-173 34-94 (238)
342 PF10647 Gmad1: Lipoprotein Lp 96.5 0.23 4.9E-06 44.1 16.0 153 101-304 25-192 (253)
343 smart00320 WD40 WD40 repeats. 96.5 0.0048 1E-07 35.6 3.8 27 101-127 14-40 (40)
344 PF04841 Vps16_N: Vps16, N-ter 96.4 0.93 2E-05 43.4 25.4 66 104-173 33-109 (410)
345 KOG1008 Uncharacterized conser 96.4 0.0024 5.2E-08 61.2 2.9 155 101-309 104-276 (783)
346 KOG1275 PAB-dependent poly(A) 96.3 0.03 6.5E-07 56.2 10.2 142 108-306 184-340 (1118)
347 KOG1832 HIV-1 Vpr-binding prot 96.3 0.0033 7.2E-08 62.5 3.6 143 232-398 1097-1241(1516)
348 KOG4640 Anaphase-promoting com 96.3 0.021 4.5E-07 54.9 8.8 48 240-287 66-115 (665)
349 PF08553 VID27: VID27 cytoplas 96.2 0.2 4.3E-06 51.2 15.4 62 237-299 578-640 (794)
350 PF14583 Pectate_lyase22: Olig 96.1 1.2 2.6E-05 41.5 21.9 68 106-173 42-110 (386)
351 PF08553 VID27: VID27 cytoplas 96.1 0.083 1.8E-06 53.8 12.0 69 101-173 579-647 (794)
352 COG3391 Uncharacterized conser 96.1 1.4 3E-05 41.8 22.8 203 102-375 76-290 (381)
353 PF06433 Me-amine-dh_H: Methyl 96.0 1.1 2.5E-05 40.8 22.8 158 249-420 148-320 (342)
354 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.2E-07 35.2 5.2 29 237-265 12-40 (47)
355 TIGR03300 assembly_YfgL outer 96.0 1.4 3.1E-05 41.6 23.2 136 248-417 241-376 (377)
356 COG3386 Gluconolactonase [Carb 96.0 1.2 2.7E-05 40.5 23.3 104 275-397 160-264 (307)
357 PF02897 Peptidase_S9_N: Proly 95.9 0.3 6.6E-06 46.9 14.8 118 240-370 127-262 (414)
358 PF08596 Lgl_C: Lethal giant l 95.9 1.7 3.6E-05 41.3 20.5 71 101-173 3-115 (395)
359 PF04053 Coatomer_WDAD: Coatom 95.6 0.63 1.4E-05 44.8 15.4 143 144-370 33-175 (443)
360 COG3490 Uncharacterized protei 95.4 1.5 3.4E-05 38.6 15.3 56 242-297 119-181 (366)
361 PF05694 SBP56: 56kDa selenium 95.3 0.66 1.4E-05 43.6 13.9 60 237-296 312-392 (461)
362 PF14583 Pectate_lyase22: Olig 95.3 1.1 2.3E-05 41.7 15.0 143 143-308 187-383 (386)
363 COG3204 Uncharacterized protei 95.1 0.97 2.1E-05 40.0 13.5 132 229-369 78-211 (316)
364 COG3204 Uncharacterized protei 95.1 2.3 4.9E-05 37.8 19.9 172 141-371 83-266 (316)
365 PF08596 Lgl_C: Lethal giant l 94.8 0.58 1.3E-05 44.3 12.3 164 238-420 3-173 (395)
366 PF06433 Me-amine-dh_H: Methyl 94.8 2.2 4.7E-05 39.0 15.2 69 101-174 96-166 (342)
367 KOG2395 Protein involved in va 94.8 0.84 1.8E-05 43.6 12.9 58 239-298 433-492 (644)
368 PF14783 BBS2_Mid: Ciliary BBS 94.7 0.66 1.4E-05 34.7 9.8 66 102-173 2-71 (111)
369 COG3391 Uncharacterized conser 94.6 4.2 9.2E-05 38.5 27.5 127 238-375 117-246 (381)
370 KOG3630 Nuclear pore complex, 94.3 1.9 4.1E-05 45.2 15.2 58 237-294 199-260 (1405)
371 PF14727 PHTB1_N: PTHB1 N-term 94.3 5.1 0.00011 38.2 23.4 63 111-173 37-105 (418)
372 TIGR02604 Piru_Ver_Nterm putat 94.2 5 0.00011 37.8 24.9 65 101-168 15-93 (367)
373 PF03178 CPSF_A: CPSF A subuni 94.1 4.7 0.0001 37.1 19.7 153 102-309 29-203 (321)
374 PF14870 PSII_BNR: Photosynthe 94.1 4.5 9.7E-05 36.8 23.6 157 236-417 144-301 (302)
375 PF10313 DUF2415: Uncharacteri 94.0 0.21 4.5E-06 30.1 4.8 31 237-267 1-34 (43)
376 PRK10115 protease 2; Provision 93.4 3.9 8.4E-05 42.1 16.0 114 239-367 129-254 (686)
377 PF10168 Nup88: Nuclear pore c 93.4 11 0.00023 38.9 23.8 97 142-269 83-182 (717)
378 PF12234 Rav1p_C: RAVE protein 93.3 1.6 3.4E-05 43.7 12.4 70 103-173 33-104 (631)
379 PF07995 GSDH: Glucose / Sorbo 92.8 8.1 0.00017 35.8 19.6 52 102-154 4-59 (331)
380 PF14870 PSII_BNR: Photosynthe 92.5 8 0.00017 35.1 19.7 165 118-349 121-292 (302)
381 PF10313 DUF2415: Uncharacteri 92.5 0.4 8.6E-06 28.9 4.4 30 144-173 1-33 (43)
382 PF10168 Nup88: Nuclear pore c 92.4 4.8 0.0001 41.3 14.8 79 334-420 86-179 (717)
383 PF00780 CNH: CNH domain; Int 92.2 8.3 0.00018 34.5 24.7 60 109-173 5-64 (275)
384 TIGR03300 assembly_YfgL outer 92.1 11 0.00023 35.6 21.7 58 111-173 65-123 (377)
385 PF12234 Rav1p_C: RAVE protein 92.0 2.1 4.6E-05 42.8 11.3 116 238-367 31-155 (631)
386 KOG2395 Protein involved in va 91.8 2.5 5.4E-05 40.5 11.0 69 101-173 432-500 (644)
387 KOG2377 Uncharacterized conser 91.7 6.2 0.00014 37.3 13.1 144 103-297 26-173 (657)
388 PF14761 HPS3_N: Hermansky-Pud 91.7 7.6 0.00017 33.0 14.6 116 249-371 29-166 (215)
389 PF04841 Vps16_N: Vps16, N-ter 91.3 14 0.00031 35.4 22.3 57 237-293 217-275 (410)
390 KOG2079 Vacuolar assembly/sort 91.2 0.67 1.5E-05 48.0 7.2 69 101-173 132-203 (1206)
391 TIGR03606 non_repeat_PQQ dehyd 91.2 6.1 0.00013 38.1 13.3 54 236-289 29-90 (454)
392 KOG2079 Vacuolar assembly/sort 91.2 0.81 1.8E-05 47.4 7.7 73 236-309 130-206 (1206)
393 KOG1897 Damage-specific DNA bi 91.0 22 0.00048 37.1 24.8 84 331-419 713-814 (1096)
394 KOG2114 Vacuolar assembly/sort 91.0 15 0.00032 37.7 15.8 73 101-173 127-201 (933)
395 PF07676 PD40: WD40-like Beta 90.7 0.87 1.9E-05 26.8 4.8 28 236-263 8-38 (39)
396 PF13360 PQQ_2: PQQ-like domai 90.6 11 0.00023 32.7 18.2 63 247-310 75-142 (238)
397 PRK10115 protease 2; Provision 90.5 24 0.00051 36.5 28.0 60 101-164 128-192 (686)
398 KOG2444 WD40 repeat protein [G 90.2 1.2 2.6E-05 37.8 6.7 60 111-173 70-132 (238)
399 KOG2247 WD40 repeat-containing 90.1 0.075 1.6E-06 49.9 -0.4 137 104-295 39-177 (615)
400 PRK13684 Ycf48-like protein; P 90.1 14 0.00031 34.3 14.6 65 101-168 174-238 (334)
401 COG5276 Uncharacterized conser 89.9 14 0.0003 33.0 18.8 107 243-371 133-244 (370)
402 COG5290 IkappaB kinase complex 89.9 25 0.00055 35.9 16.4 157 239-420 204-366 (1243)
403 PF07676 PD40: WD40-like Beta 89.8 1.1 2.5E-05 26.3 4.8 25 275-299 6-30 (39)
404 PF07995 GSDH: Glucose / Sorbo 89.7 4 8.7E-05 37.8 10.6 110 238-350 3-131 (331)
405 COG4590 ABC-type uncharacteriz 89.4 3.5 7.6E-05 38.8 9.5 162 101-311 222-389 (733)
406 PF07569 Hira: TUP1-like enhan 89.2 2.9 6.3E-05 36.1 8.7 55 244-298 18-87 (219)
407 PF12657 TFIIIC_delta: Transcr 88.9 4.8 0.00011 33.2 9.6 30 237-266 86-121 (173)
408 KOG4460 Nuclear pore complex, 88.8 24 0.00052 34.2 14.8 33 238-270 105-137 (741)
409 PF07569 Hira: TUP1-like enhan 88.6 3.6 7.8E-05 35.5 8.8 66 107-173 18-95 (219)
410 PF03178 CPSF_A: CPSF A subuni 87.6 23 0.00049 32.6 14.4 113 101-267 90-203 (321)
411 COG3386 Gluconolactonase [Carb 87.6 22 0.00048 32.5 14.5 155 243-420 31-193 (307)
412 KOG4460 Nuclear pore complex, 86.6 17 0.00036 35.2 12.2 96 144-270 104-202 (741)
413 PRK11138 outer membrane biogen 86.0 32 0.00069 32.7 21.1 58 111-173 120-178 (394)
414 KOG2280 Vacuolar assembly/sort 85.8 44 0.00095 34.1 16.4 65 105-173 38-112 (829)
415 KOG3630 Nuclear pore complex, 85.3 8.6 0.00019 40.7 10.4 112 238-367 102-227 (1405)
416 KOG4649 PQQ (pyrrolo-quinoline 84.6 27 0.00059 30.6 12.4 110 246-376 20-131 (354)
417 PF13449 Phytase-like: Esteras 84.0 35 0.00077 31.5 16.7 111 238-349 86-231 (326)
418 PF05694 SBP56: 56kDa selenium 83.4 28 0.00061 33.2 12.2 109 257-372 221-346 (461)
419 PRK13684 Ycf48-like protein; P 83.3 39 0.00084 31.4 20.6 109 238-366 216-329 (334)
420 TIGR02276 beta_rpt_yvtn 40-res 83.0 3.2 6.9E-05 24.6 4.2 26 246-271 1-27 (42)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 82.6 9 0.0002 36.5 8.9 78 336-419 5-96 (415)
422 PF02333 Phytase: Phytase; In 82.6 44 0.00095 31.5 20.8 122 238-370 157-292 (381)
423 PF14761 HPS3_N: Hermansky-Pud 82.2 31 0.00066 29.5 12.6 50 112-162 29-78 (215)
424 TIGR02604 Piru_Ver_Nterm putat 81.9 46 0.001 31.3 17.9 60 102-163 74-143 (367)
425 KOG4499 Ca2+-binding protein R 81.6 34 0.00074 29.6 13.9 88 279-373 159-246 (310)
426 PF08728 CRT10: CRT10; InterP 81.5 35 0.00077 34.9 12.9 75 98-173 99-195 (717)
427 TIGR03606 non_repeat_PQQ dehyd 80.9 15 0.00032 35.6 9.8 69 334-409 31-103 (454)
428 PF00780 CNH: CNH domain; Int 80.8 41 0.00089 29.9 16.9 115 239-373 38-170 (275)
429 PF08728 CRT10: CRT10; InterP 79.8 77 0.0017 32.6 15.9 162 248-422 49-248 (717)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 79.1 23 0.0005 33.8 10.4 31 101-131 309-339 (415)
431 PF14781 BBS2_N: Ciliary BBSom 78.5 30 0.00065 27.1 13.8 71 103-173 2-81 (136)
432 KOG2444 WD40 repeat protein [G 78.0 7.6 0.00016 33.2 6.0 60 248-309 70-133 (238)
433 KOG1916 Nuclear protein, conta 77.9 9.2 0.0002 39.4 7.5 104 121-266 153-265 (1283)
434 KOG2377 Uncharacterized conser 77.5 69 0.0015 30.7 18.0 101 235-350 65-171 (657)
435 COG5290 IkappaB kinase complex 76.5 6.4 0.00014 39.9 5.9 94 104-224 251-349 (1243)
436 PF03088 Str_synth: Strictosid 76.1 8 0.00017 27.9 5.0 45 255-299 34-78 (89)
437 PF12657 TFIIIC_delta: Transcr 75.5 20 0.00044 29.5 8.1 32 389-420 87-121 (173)
438 KOG1897 Damage-specific DNA bi 75.0 1.2E+02 0.0026 32.2 16.3 154 101-310 776-944 (1096)
439 KOG4499 Ca2+-binding protein R 73.6 61 0.0013 28.2 10.9 74 336-419 161-240 (310)
440 TIGR02171 Fb_sc_TIGR02171 Fibr 73.5 54 0.0012 34.4 11.7 60 251-310 322-387 (912)
441 TIGR03032 conserved hypothetic 72.1 79 0.0017 28.9 14.7 52 243-297 209-260 (335)
442 TIGR02276 beta_rpt_yvtn 40-res 71.9 12 0.00027 21.9 4.5 28 342-374 1-28 (42)
443 COG1770 PtrB Protease II [Amin 69.4 61 0.0013 32.7 10.7 61 239-300 131-196 (682)
444 KOG2280 Vacuolar assembly/sort 66.8 1.6E+02 0.0035 30.3 15.0 54 237-290 217-272 (829)
445 COG1506 DAP2 Dipeptidyl aminop 66.8 1.3E+02 0.0028 30.7 13.2 57 99-160 59-117 (620)
446 PLN00033 photosystem II stabil 64.9 1.3E+02 0.0029 28.7 17.1 98 238-349 282-387 (398)
447 PRK13615 lipoprotein LpqB; Pro 64.1 1.6E+02 0.0036 29.5 15.7 147 240-408 337-487 (557)
448 KOG1898 Splicing factor 3b, su 62.9 2.2E+02 0.0048 30.6 16.0 56 242-300 939-997 (1205)
449 PF07250 Glyoxal_oxid_N: Glyox 61.4 1.1E+02 0.0025 26.8 10.6 118 244-373 74-202 (243)
450 PLN00033 photosystem II stabil 61.2 1.6E+02 0.0034 28.2 25.9 155 238-417 240-396 (398)
451 COG5167 VID27 Protein involved 59.7 25 0.00055 34.0 5.9 59 112-173 574-632 (776)
452 PF01436 NHL: NHL repeat; Int 59.1 26 0.00057 18.7 3.7 24 103-126 5-28 (28)
453 PRK13613 lipoprotein LpqB; Pro 58.8 2.1E+02 0.0046 29.0 15.6 164 238-419 364-536 (599)
454 PF14781 BBS2_N: Ciliary BBSom 58.2 89 0.0019 24.5 12.1 110 242-373 4-130 (136)
455 COG5167 VID27 Protein involved 56.5 34 0.00073 33.2 6.1 52 247-298 572-624 (776)
456 COG4590 ABC-type uncharacteriz 55.7 1.2E+02 0.0026 29.2 9.4 30 334-370 359-388 (733)
457 KOG1520 Predicted alkaloid syn 54.4 1.9E+02 0.0041 27.1 15.5 57 253-309 194-250 (376)
458 KOG3616 Selective LIM binding 53.8 32 0.00069 35.0 5.8 31 101-131 16-46 (1636)
459 KOG1916 Nuclear protein, conta 51.5 17 0.00038 37.6 3.7 69 101-173 182-265 (1283)
460 PF11715 Nup160: Nucleoporin N 50.9 26 0.00056 35.1 5.0 32 239-270 217-252 (547)
461 PRK11138 outer membrane biogen 50.5 2.3E+02 0.0049 26.9 21.5 138 248-419 256-393 (394)
462 PF10214 Rrn6: RNA polymerase 47.2 3.7E+02 0.008 28.4 22.6 108 144-288 146-257 (765)
463 PF10214 Rrn6: RNA polymerase 46.6 3.8E+02 0.0082 28.3 26.7 164 237-424 146-333 (765)
464 PF12341 DUF3639: Protein of u 45.2 50 0.0011 17.7 3.6 24 101-126 3-26 (27)
465 PF13570 PQQ_3: PQQ-like domai 44.5 37 0.00081 19.8 3.1 21 247-267 20-40 (40)
466 PF01731 Arylesterase: Arylest 44.0 58 0.0013 23.3 4.5 31 334-369 55-85 (86)
467 PF11715 Nup160: Nucleoporin N 43.5 40 0.00086 33.8 5.0 31 101-131 216-250 (547)
468 PF01731 Arylesterase: Arylest 42.3 1.1E+02 0.0024 21.8 5.7 32 277-308 53-84 (86)
469 smart00564 PQQ beta-propeller 42.2 47 0.001 18.1 3.2 21 250-270 8-28 (33)
470 PHA02713 hypothetical protein; 41.6 3.8E+02 0.0083 27.0 14.0 27 343-373 512-538 (557)
471 PF05935 Arylsulfotrans: Aryls 39.8 3.8E+02 0.0082 26.4 12.3 35 334-373 272-306 (477)
472 KOG2006 WD40 repeat protein [G 39.8 70 0.0015 33.9 5.9 72 101-173 150-225 (1023)
473 COG1506 DAP2 Dipeptidyl aminop 38.1 1.1E+02 0.0025 31.2 7.4 63 273-349 55-117 (620)
474 KOG1900 Nuclear pore complex, 37.7 2.2E+02 0.0047 31.4 9.1 34 235-268 241-274 (1311)
475 PF13449 Phytase-like: Esteras 34.9 3.7E+02 0.008 24.8 22.7 75 235-309 145-252 (326)
476 KOG3616 Selective LIM binding 34.7 90 0.0019 32.0 5.6 33 238-270 16-48 (1636)
477 TIGR02608 delta_60_rpt delta-6 34.1 1.2E+02 0.0026 19.5 4.4 18 102-119 3-20 (55)
478 PRK13615 lipoprotein LpqB; Pro 33.9 5.1E+02 0.011 26.1 15.0 154 102-309 336-503 (557)
479 PF09866 DUF2093: Uncharacteri 33.3 28 0.00061 20.8 1.2 21 6-26 3-23 (42)
480 PRK13614 lipoprotein LpqB; Pro 31.8 5.6E+02 0.012 26.0 18.1 83 278-368 434-518 (573)
481 PF05787 DUF839: Bacterial pro 31.1 1.1E+02 0.0024 30.4 5.8 21 275-295 499-519 (524)
482 PF11635 Med16: Mediator compl 31.0 6.6E+02 0.014 26.5 16.8 63 237-299 260-342 (753)
483 PF14727 PHTB1_N: PTHB1 N-term 30.6 5E+02 0.011 25.1 15.1 39 248-286 37-80 (418)
484 KOG4649 PQQ (pyrrolo-quinoline 29.5 4.1E+02 0.0089 23.7 19.5 51 243-293 100-152 (354)
485 PF07250 Glyoxal_oxid_N: Glyox 28.7 2.5E+02 0.0053 24.8 6.8 40 261-300 49-89 (243)
486 KOG1900 Nuclear pore complex, 28.5 8.7E+02 0.019 27.2 16.0 54 118-173 96-157 (1311)
487 COG4257 Vgb Streptogramin lyas 28.5 4.4E+02 0.0096 23.8 14.4 179 101-306 63-260 (353)
488 KOG4441 Proteins containing BT 28.4 6.4E+02 0.014 25.6 11.3 138 110-301 380-534 (571)
489 PF03088 Str_synth: Strictosid 28.3 2.3E+02 0.005 20.4 7.0 40 119-161 35-74 (89)
490 KOG0918 Selenium-binding prote 28.0 3.5E+02 0.0076 25.7 7.8 92 261-352 293-408 (476)
491 KOG2247 WD40 repeat-containing 27.9 39 0.00085 32.6 1.9 57 105-165 123-180 (615)
492 PF01011 PQQ: PQQ enzyme repea 27.4 99 0.0022 17.7 3.0 20 251-270 3-22 (38)
493 COG4880 Secreted protein conta 25.8 4.5E+02 0.0097 25.3 8.1 78 328-419 423-502 (603)
494 KOG1983 Tomosyn and related SN 25.5 9.2E+02 0.02 26.5 13.4 29 101-129 37-65 (993)
495 COG2133 Glucose/sorbosone dehy 24.9 6.2E+02 0.013 24.2 12.8 162 240-407 70-256 (399)
496 TIGR03118 PEPCTERM_chp_1 conse 24.9 5.5E+02 0.012 23.6 18.6 54 360-419 222-278 (336)
497 PHA03098 kelch-like protein; P 24.4 7.1E+02 0.015 24.7 16.0 199 110-377 294-520 (534)
498 PHA02713 hypothetical protein; 23.8 4.5E+02 0.0098 26.5 8.7 23 247-269 512-536 (557)
499 PF11725 AvrE: Pathogenicity f 22.8 9.4E+02 0.02 27.9 10.9 70 237-309 438-517 (1774)
500 PF12566 DUF3748: Protein of u 22.5 85 0.0018 23.7 2.4 17 337-353 72-88 (122)
No 1
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-49 Score=339.26 Aligned_cols=407 Identities=39% Similarity=0.670 Sum_probs=333.7
Q ss_pred CCCCCCCCceEEEEEcceeeeecccCcchhhhhhcccceeeeccCCCCCccccCCCCCchhhhhccccccccchhhhhhh
Q 014302 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGI 80 (427)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (427)
|-+||+||.+|++++|+|+.++...++.+..+.++||+|++|.++-|..-.+...+.|.|.. +......+.++++++..
T Consensus 1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~E~~-~~~~~as~~~~a~l~~a 79 (445)
T KOG2139|consen 1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEGENG-DKASGASKGLVATLQMA 79 (445)
T ss_pred CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCcccccc-hhhcccchHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999988754332222222211 12234567788888888
Q ss_pred hhccccccccCCCCCCCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEE
Q 014302 81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS 160 (427)
Q Consensus 81 ~~~~~~~~~~p~~~~~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 160 (427)
+....++...+.+...+.+..++.++||+.-..+|++..|.+|++|+-+.. .+..+++..+..|++++|.|.+...|+
T Consensus 80 ~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~ksst--~pt~Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 80 VALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST--CPTKLKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccCCC--CCceecchhhcceeEEEeccCCcceee
Confidence 888888888777888889999999999998788999999999999886653 666777778889999999999999999
Q ss_pred EecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------
Q 014302 161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG----------- 229 (427)
Q Consensus 161 ~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----------- 229 (427)
+|+..+|+||..+.+.+......+. .-...+.+++..+.+|++++|++||..+.+.
T Consensus 158 vgCr~gIciW~~s~tln~~r~~~~~-------------s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWd 224 (445)
T KOG2139|consen 158 VGCRAGICIWSDSRTLNANRNIRMM-------------STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWD 224 (445)
T ss_pred eeecceeEEEEcCcccccccccccc-------------cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEc
Confidence 9999999999998555443322221 1134566777778999999999999875433
Q ss_pred ------ceEE-eccCCeEEEEEccCCCEEEEEecCCcEEEE-EcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302 230 ------TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLW-ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT 301 (427)
Q Consensus 230 ------~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw-d~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~ 301 (427)
.+++ ...+++.-+.|||||.+|++++.|+..++| ..+++.++++.-..+.|...+|+|+|++|++++.....
T Consensus 225 pdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 225 PDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred CCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence 2233 355788899999999999999999999999 56777788888777799999999999999999999999
Q ss_pred eeeeeeCCCCCCcc------ccccccccccceeecc----CCceeEEEECCCCCEEEEEEecCC--CcceeEEEEEEecc
Q 014302 302 LGSIHFASKPPSLD------AHLLPVDLPDIVSLTG----SQGIEKIAWDASGERLAVSYKGGD--DIYKGLIAIYDARR 369 (427)
Q Consensus 302 i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~i~~v~~sp~g~~La~~~~~~~--d~~~g~i~vwd~~~ 369 (427)
++...+..+...+. .+..+.++++.....+ ++.+.+++|+|.|.+||+.+++.+ ......|.+||.+.
T Consensus 305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 99999988754443 6667777777766655 679999999999999999999987 22236688999999
Q ss_pred CceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccCCCCC
Q 014302 370 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427 (427)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~~~~ 427 (427)
.+.+.+.++|++.++. |.-++|+|-+++|.+|+|+|+.|+|+.|||+|..+-+|
T Consensus 385 sp~vels~cg~i~ge~----P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~~~~~p 438 (445)
T KOG2139|consen 385 SPPVELSYCGMIGGEY----PAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQCFRDP 438 (445)
T ss_pred cCceEEEecccccCCC----CceEEeeecccCCcEEEEEeccCceEeeeeEEEeeccc
Confidence 9999999999988755 55788999899999999999999999999999988765
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-32 Score=237.70 Aligned_cols=259 Identities=14% Similarity=0.206 Sum_probs=211.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-CCceEEEe-cCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGRSLSVG-CKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g-~~~~i~iw~~~~~~~~ 178 (427)
+|..+.|++|+..||||+.+|.++||..... .......+|...|.++.|+|. ...-+|++ .|+++++|+++
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~----- 249 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS----- 249 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-----
Confidence 8999999999999999999999999998877 566777899999999999998 34455555 56999999998
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeEE
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLSI 241 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~~ 241 (427)
.-.++..+.+| ..+|..++|+|+|++++++.. ..+|..+|.+
T Consensus 250 --------------------~e~~l~~l~gH-~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 250 --------------------QETPLQDLEGH-LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred --------------------CCcchhhhhcc-hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccce
Confidence 22467778888 799999999999999886642 4568999999
Q ss_pred EEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccc
Q 014302 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHL 318 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~ 318 (427)
++|+|||..+++|+.|..=+|||++++.+..+. +|...|.+|.|+|+|..||++++++ ++++|++..... .+.+|.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~ly~ipAH~ 387 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMRSELYTIPAHS 387 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC-cEEEeeecccccceeccccc
Confidence 999999999999999999999999999996555 9999999999999999999876555 888888877532 233333
Q ss_pred cccccccceeeccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302 319 LPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 397 (427)
Q Consensus 319 ~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 397 (427)
.-|+.|.|+| .|.+|++ ++-| .+++||...+..++ ..+. +...++.++...+
T Consensus 388 --------------nlVS~Vk~~p~~g~fL~T---asyD---~t~kiWs~~~~~~~-----ksLa--GHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 388 --------------NLVSQVKYSPQEGYFLVT---ASYD---NTVKIWSTRTWSPL-----KSLA--GHEGKVISLDISP 440 (459)
T ss_pred --------------chhhheEecccCCeEEEE---cccC---cceeeecCCCcccc-----hhhc--CCccceEEEEecc
Confidence 3789999998 7888888 5555 66999999887665 2222 3444577888877
Q ss_pred CCCCCceeEEEeeCceEEEEe
Q 014302 398 KFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 398 ~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+ +..++.+.-|-.|.||.
T Consensus 441 d---~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 441 D---SQAIATSSFDRTIKLWR 458 (459)
T ss_pred C---CceEEEeccCceeeecc
Confidence 6 56677776788888874
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-31 Score=229.32 Aligned_cols=289 Identities=20% Similarity=0.313 Sum_probs=205.6
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEe
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA 171 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~ 171 (427)
.-+.+| .|-|++|+|+|.+||+|+.|.++|+||+.+. .+.....+|...|.|++|+||| ..||+|+. |.|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCc-chhhccccCCeEEEec
Confidence 344566 8999999999999999999999999999988 5667778999999999999999 67777765 9999999
Q ss_pred ccCCCCccccccC-----------------cccccccccCCCCcce------eEeehhcccCCCceeeeEeCCCCCCcc-
Q 014302 172 PSYPGNAASVRSG-----------------AASFLGALSRGPGTRW------TLVDFLRSQNGEQITALSWGPDGRFPG- 227 (427)
Q Consensus 172 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~spdg~~l~- 227 (427)
-..++..-..-.+ +...+..-++++.-.+ .++..+.+| ..+|+|+.|.-+|-+-.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVTCVRWGGEGLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceEEEEEcCCceEEec
Confidence 7633221111111 1112222233433222 133445555 78888888875543200
Q ss_pred ---------------cCceEEeccCCeEEEEEc-----------cCCC-------------------------EEEEEec
Q 014302 228 ---------------LGTPIRRGFGGLSILKWS-----------PTGD-------------------------YFFAAKF 256 (427)
Q Consensus 228 ---------------~~~~~~~~~~~v~~~~~s-----------p~g~-------------------------~l~~~~~ 256 (427)
....+++|...|..++.| |.++ .|++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 112355677777777755 3343 3888998
Q ss_pred CCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCccccccccccccceeeccC
Q 014302 257 DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 257 dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
|.++.+|+....+. ....+|..-|..+.||||++++++++-+. .++.|+-.+. ..++.||..
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~------------- 410 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVA------------- 410 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccc-------------
Confidence 99999998655443 34458999999999999999999886555 6666665554 236677776
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
.|..++|+.|.++|++ ++.| .++++|++++.++..- -++....+.++.|.|+ |..++-|-.|-
T Consensus 411 -~VYqvawsaDsRLlVS---~SkD---sTLKvw~V~tkKl~~D-------LpGh~DEVf~vDwspD---G~rV~sggkdk 473 (480)
T KOG0271|consen 411 -AVYQVAWSADSRLLVS---GSKD---STLKVWDVRTKKLKQD-------LPGHADEVFAVDWSPD---GQRVASGGKDK 473 (480)
T ss_pred -eeEEEEeccCccEEEE---cCCC---ceEEEEEeeeeeeccc-------CCCCCceEEEEEecCC---CceeecCCCce
Confidence 7799999999999988 6666 6799999999887522 2334444789999986 88888887887
Q ss_pred eEEEEe
Q 014302 413 FCCTYP 418 (427)
Q Consensus 413 ~i~~~~ 418 (427)
.+.||.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 777763
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.7e-29 Score=223.77 Aligned_cols=260 Identities=22% Similarity=0.374 Sum_probs=196.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|++++|+.+|..||+|+.||.+++|+.... .......|.++|.++.|+.+|.++|+.+.|+++.+||..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~------- 306 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH------- 306 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-------
Confidence 8999999999999999999999999998765 666677899999999999999777888888999999986
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC---------CCCC----cc---cCceEEeccCCeEEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP---------DGRF----PG---LGTPIRRGFGGLSILKW 244 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---------dg~~----l~---~~~~~~~~~~~v~~~~~ 244 (427)
++ ...+.+..+ ..+-..+.|-. ||.+ +. ....+.+|.+.|.++.|
T Consensus 307 --~g----------------~~~q~f~~~-s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 307 --TG----------------TVKQQFEFH-SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred --Cc----------------eEEEeeeec-cCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 22 222223332 22223334432 3322 11 11234569999999999
Q ss_pred ccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCC---------CEEEEEEcCCceeeeeeeCCCCC--
Q 014302 245 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG---------RMILLAFAGSLTLGSIHFASKPP-- 312 (427)
Q Consensus 245 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg---------~~l~~~~~~~~~i~~~~~~~~~~-- 312 (427)
.|.|..|++++.|++++||.+....+ ..+..|...|..+.|+|.| ..+++++.+ +++.+|++....+
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d-stV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD-STVKLWDVESGVPIH 446 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC-CeEEEEEccCCceeE
Confidence 99999999999999999999876665 5566899999999999965 456665544 4888888877633
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 392 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
.+.. |..+|.+|+|+|+|+|||+ |+-| |.|.+|++++++++.... .......
T Consensus 447 ~f~k--------------H~~pVysvafS~~g~ylAs---Gs~d---g~V~iws~~~~~l~~s~~--------~~~~Ife 498 (524)
T KOG0273|consen 447 TLMK--------------HQEPVYSVAFSPNGRYLAS---GSLD---GCVHIWSTKTGKLVKSYQ--------GTGGIFE 498 (524)
T ss_pred eecc--------------CCCceEEEEecCCCcEEEe---cCCC---CeeEeccccchheeEeec--------CCCeEEE
Confidence 2333 4448899999999999999 8887 789999999999874321 1111334
Q ss_pred EEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCTYPLIF 421 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~~ 421 (427)
+.|.. .|..|+++.++|.+++.+|.+
T Consensus 499 l~Wn~---~G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 499 LCWNA---AGDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred EEEcC---CCCEEEEEecCCCceEEEecC
Confidence 55644 478999999999999999864
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.2e-30 Score=221.06 Aligned_cols=241 Identities=20% Similarity=0.350 Sum_probs=173.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-----CCCceEEEec-CCeEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGC-KGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-----~~~~~la~g~-~~~i~iw~~~~ 174 (427)
-|.|++|+|||++||+|+.||+|++||..++.. .-....+|...|++++|.| .. ++||+++ |+.++|||+..
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~-r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPC-RRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCc-cceecccCCCCEEEEEccC
Confidence 799999999999999999999999999877732 3345568999999999986 44 4666664 59999999972
Q ss_pred CCCccccccC-----------cccccccccCCCCc------ceeEeehhcccCCCceeeeEeC-----------CCCCC-
Q 014302 175 PGNAASVRSG-----------AASFLGALSRGPGT------RWTLVDFLRSQNGEQITALSWG-----------PDGRF- 225 (427)
Q Consensus 175 ~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s-----------pdg~~- 225 (427)
+.......+ +..-+..-+++..- +-.+...+++| ...|+.++.+ |.|+.
T Consensus 237 -~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 237 -GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred -ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhccc-chheeeeeccchhhhhccccccccccC
Confidence 211111111 11111111111111 11233455666 6667766655 33333
Q ss_pred ------------------------cccC------------------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEE
Q 014302 226 ------------------------PGLG------------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 263 (427)
Q Consensus 226 ------------------------l~~~------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw 263 (427)
+.++ ..+.+|..-|..+.||||++++|+++.|++|++|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLW 394 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeee
Confidence 1111 1234588889999999999999999999999999
Q ss_pred EcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEE
Q 014302 264 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAW 340 (427)
Q Consensus 264 d~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 340 (427)
|.++++. ..+.+|-..|..++|+.|.+.|+++ +.+.++++|++..++. .+.||. ..|.++.|
T Consensus 395 ~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~-SkDsTLKvw~V~tkKl~~DLpGh~--------------DEVf~vDw 459 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG-SKDSTLKVWDVRTKKLKQDLPGHA--------------DEVFAVDW 459 (480)
T ss_pred eCCCcchhhhhhhccceeEEEEeccCccEEEEc-CCCceEEEEEeeeeeecccCCCCC--------------ceEEEEEe
Confidence 9999998 4556899999999999999988865 5666999999988743 333443 38899999
Q ss_pred CCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 341 DASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 341 sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
+|||+.+++ |+.| ..+++|.
T Consensus 460 spDG~rV~s---ggkd---kv~~lw~ 479 (480)
T KOG0271|consen 460 SPDGQRVAS---GGKD---KVLRLWR 479 (480)
T ss_pred cCCCceeec---CCCc---eEEEeec
Confidence 999999998 7777 7799985
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-28 Score=202.87 Aligned_cols=274 Identities=15% Similarity=0.218 Sum_probs=210.1
Q ss_pred CCCC--ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCC---CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302 97 LPEV--DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSG---KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw 170 (427)
+.+| .|+.++..+.+. .|.+++.|.++.+|++.... ..+.....+|...|..+..++||.+.|+.+.|+.+++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 3445 799999988854 88899999999999998762 23456667899999999999999777777788999999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------EEe--
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------IRR-- 234 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~~~-- 234 (427)
|+. ++ ...+.+.+| ...|.++++++|.+.+.+|.. +..
T Consensus 91 Dl~---------~g----------------~~t~~f~GH-~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~ 144 (315)
T KOG0279|consen 91 DLA---------TG----------------ESTRRFVGH-TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE 144 (315)
T ss_pred Eec---------CC----------------cEEEEEEec-CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec
Confidence 998 22 455667777 889999999999998776643 111
Q ss_pred --ccCCeEEEEEccC--CCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 235 --GFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 235 --~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
+..-|.++.|+|+ ..+|++++.|++|++||+++.+. ..+.+|.+.++.+++||||...++| +.++.+..|++..
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG-gkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG-GKDGEAMLWDLNE 223 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC-CCCceEEEEEccC
Confidence 2467999999998 67888999999999999999887 4566999999999999999999876 5556899999988
Q ss_pred CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE-Eeeeeeee-CCCCC
Q 014302 310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS-LSLIGFIR-GPGDN 387 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~-~~~~~~~~-~~~~~ 387 (427)
++. ...+.+...|.+++|+|+.-+|+.. .. ..|+|||+.++.++. +.+.+.-. .....
T Consensus 224 ~k~-------------lysl~a~~~v~sl~fspnrywL~~a---t~----~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 224 GKN-------------LYSLEAFDIVNSLCFSPNRYWLCAA---TA----TSIKIWDLESKAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred Cce-------------eEeccCCCeEeeEEecCCceeEeec---cC----CceEEEeccchhhhhhccccccccccccCC
Confidence 643 1223344489999999999888873 22 239999999987753 33322211 11223
Q ss_pred CCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
+..+.++|.+ +|+.|-.|+.|+.|.+|.+.
T Consensus 284 ~~clslaws~---dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAWSA---DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEEcC---CCcEEEeeecCCcEEEEEee
Confidence 3334455654 59999999999999998754
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=198.36 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=207.8
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEe
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA 171 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~ 171 (427)
++|.+| +|.++.|++|.++|++++.||.+.|||.-+..+. ....-....|+.++|+|.| +++|+|+ ++...||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~--haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV--HAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce--eEEecCceeEEEEEECCCC-CeEEecCcCceeEEEe
Confidence 567888 9999999999999999999999999998777332 2333455689999999999 7777775 47777999
Q ss_pred ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------cC---ceEEec
Q 014302 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------LG---TPIRRG 235 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------~~---~~~~~~ 235 (427)
+....+ .+.....+.+.+| ...+.+..|-+|+.++. ++ ..+.+|
T Consensus 126 ls~~d~-------------------~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 126 LSTRDA-------------------EGNVRVSRELAGH-TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred cccccc-------------------cccceeeeeecCc-cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC
Confidence 973211 1122344556666 88888999988887743 22 235668
Q ss_pred cCCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--
Q 014302 236 FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-- 311 (427)
Q Consensus 236 ~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~-- 311 (427)
.+.|.+++++| +++.+++|+.|+..++||++.+.+ +.+.+|...|.+++|.|+|.-++++ +++++.+++++....
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG-SDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG-SDDATCRLYDLRADQEL 264 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeec-CCCceeEEEeecCCcEE
Confidence 99999999999 999999999999999999999988 5677999999999999999999876 566688888887642
Q ss_pred CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCce
Q 014302 312 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 391 (427)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (427)
..+.... ...+|++++||..|++|.. |..| .++.|||.-.++.+ |.+.|... +..
T Consensus 265 a~ys~~~------------~~~gitSv~FS~SGRlLfa---gy~d---~~c~vWDtlk~e~v-----g~L~GHeN--RvS 319 (343)
T KOG0286|consen 265 AVYSHDS------------IICGITSVAFSKSGRLLFA---GYDD---FTCNVWDTLKGERV-----GVLAGHEN--RVS 319 (343)
T ss_pred eeeccCc------------ccCCceeEEEcccccEEEe---eecC---CceeEeeccccceE-----EEeeccCC--eeE
Confidence 1222111 1238999999999999977 5555 45999998777765 44444443 356
Q ss_pred eEEeccCCCCCceeEEEeeCceEEEE
Q 014302 392 AFSFHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 392 ~~~f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
|+...|+ |.-|+.|.=|..+.+|
T Consensus 320 cl~~s~D---G~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 320 CLGVSPD---GMAVATGSWDSTLRIW 342 (343)
T ss_pred EEEECCC---CcEEEecchhHheeec
Confidence 8888886 8788888778888776
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.1e-29 Score=218.04 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=176.2
Q ss_pred CCCC--ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEe
Q 014302 97 LPEV--DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWA 171 (427)
Q Consensus 97 l~~~--~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~ 171 (427)
+.+| .|.++.|+|. +..||+++.||++++|+++.. .+.....+|...|..++|+|+| ++|+++ .|.+-++||
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWD 289 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCC-ceeeecccccchhhcc
Confidence 4455 8999999998 459999999999999999886 5666677899999999999999 555555 568999999
Q ss_pred ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEe
Q 014302 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRR 234 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~ 234 (427)
+. ++ ..+-..++| ...|.+++|.|||.++++|.. +.+
T Consensus 290 ~~---------tk----------------~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 290 LE---------TK----------------SELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred cc---------cc----------------hhhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 98 22 223334555 889999999999999776632 456
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCC--
Q 014302 235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASK-- 310 (427)
Q Consensus 235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~-- 310 (427)
|...|..++|+|+|..||+|+.|++++|||++..+. ....+|..-|+.|+|+| .|.+|+++ +.++++++|.-.+.
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta-syD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA-SYDNTVKIWSTRTWSP 422 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc-ccCcceeeecCCCccc
Confidence 899999999999999999999999999999998877 34459999999999999 56777765 55556666654442
Q ss_pred CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 311 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
...+.||.. .|.+++.++|++++++ .+-| .++++|.
T Consensus 423 ~ksLaGHe~--------------kV~s~Dis~d~~~i~t---~s~D---RT~KLW~ 458 (459)
T KOG0272|consen 423 LKSLAGHEG--------------KVISLDISPDSQAIAT---SSFD---RTIKLWR 458 (459)
T ss_pred chhhcCCcc--------------ceEEEEeccCCceEEE---eccC---ceeeecc
Confidence 234555544 8899999999999999 5666 5699995
No 9
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=215.33 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=197.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC---cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~ 177 (427)
.|.++++.|.|-+|++|+.|.+|++||+..... ....+.......|.+++|++.|..+|++.+....+|+|-+ +..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~ 247 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFE 247 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cce
Confidence 799999999999999999999999999987622 1222223344579999999999999999988889999875 212
Q ss_pred ccccccCcccccccccCCCCcceeEe--ehhcccCCCceeeeEeCCCCCC--cccC-----------------ceEEe--
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLV--DFLRSQNGEQITALSWGPDGRF--PGLG-----------------TPIRR-- 234 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~--l~~~-----------------~~~~~-- 234 (427)
...+..| ..+.. ..-++| ...+++.+|+|+.+- +.++ .+++.
T Consensus 248 ~~e~~KG--------------DQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 248 IVEFSKG--------------DQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred eeeeecc--------------chhhhhhhccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 1122222 11222 223344 778999999997653 2111 11211
Q ss_pred ---ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc----cCCC--CeeEEEECCCCCEEEEEEcCCceeeee
Q 014302 235 ---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----STSG--FVTGATWDPEGRMILLAFAGSLTLGSI 305 (427)
Q Consensus 235 ---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~--~v~~v~~spdg~~l~~~~~~~~~i~~~ 305 (427)
..-.++.++|+|||++||+|+.||+|.+|+..+....... .|.. .|+++.||+||++|++-+. +..+++|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvW 391 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVW 391 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC-CCceeee
Confidence 2246788999999999999999999999998766553221 6666 8999999999999997544 4499999
Q ss_pred eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCC
Q 014302 306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 385 (427)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~ 385 (427)
++.+....+.. ...+...-.-+.++|||+.++|++..+.-.....|++++||..+...+...+.
T Consensus 392 DLrq~kkpL~~---------~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i------- 455 (641)
T KOG0772|consen 392 DLRQFKKPLNV---------RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI------- 455 (641)
T ss_pred eccccccchhh---------hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-------
Confidence 98875322211 00111111458899999999998854444444568899999887665533211
Q ss_pred CCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
....++.++|||..++ +.+|..||.+++|-
T Consensus 456 ~~aSvv~~~WhpkLNQ---i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQ---IFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEEeecchhhh---eeeecCCCceEEEE
Confidence 1334778999999776 88999999999873
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=3.5e-28 Score=228.46 Aligned_cols=194 Identities=17% Similarity=0.302 Sum_probs=163.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
+|..++|+|+.++|++++.|+++|+|.+.+. .....+.+|..+|+++.|+|.| .++|+++ |++.++|..+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d------ 523 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTD------ 523 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecc------
Confidence 8999999999999999999999999999987 6777888999999999999999 7777765 5889999988
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
..++.+ .+-+|...|.|++|+|+..|+++|+.|.+
T Consensus 524 -------------------~~~PlR--------------------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~t 558 (707)
T KOG0263|consen 524 -------------------HNKPLR--------------------------IFAGHLSDVDCVSFHPNSNYVATGSSDRT 558 (707)
T ss_pred -------------------cCCchh--------------------------hhcccccccceEEECCcccccccCCCCce
Confidence 112333 23346778999999999999999999999
Q ss_pred EEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCcee
Q 014302 260 FYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIE 336 (427)
Q Consensus 260 v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 336 (427)
||+||+.++... .+.+|.++|.+++|||+|++|++|+ .++.|.+|++..... .+.+| .+.|.
T Consensus 559 VRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~v~~l~~H--------------t~ti~ 623 (707)
T KOG0263|consen 559 VRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSLVKQLKGH--------------TGTIY 623 (707)
T ss_pred EEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcchhhhhcc--------------cCcee
Confidence 999999999884 5569999999999999999999875 455888888887522 33444 34899
Q ss_pred EEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
+|.||.||..||+ ++.| .+|++||+..
T Consensus 624 SlsFS~dg~vLas---gg~D---nsV~lWD~~~ 650 (707)
T KOG0263|consen 624 SLSFSRDGNVLAS---GGAD---NSVRLWDLTK 650 (707)
T ss_pred EEEEecCCCEEEe---cCCC---CeEEEEEchh
Confidence 9999999999999 6666 5699999864
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=192.69 Aligned_cols=266 Identities=18% Similarity=0.348 Sum_probs=201.5
Q ss_pred ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCC-CCcce-eeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS-GKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~-~~~~~-~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~ 176 (427)
.|..++|||- |..||+++.|+.|++|+...+ ..... .+-.+|...|++++|+|.| ++||+++ |.++.||.-.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~--- 91 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKE--- 91 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecC---
Confidence 6899999998 899999999999999998853 22222 2334699999999999999 6777775 5889999765
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEecc
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRRGF 236 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~~~ 236 (427)
..++.++..+++| ...|.+++|+++|++|++.+ ++..|.
T Consensus 92 --------------------~~efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 92 --------------------DGEFECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred --------------------CCceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 4577899999999 99999999999999988653 356688
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCC---Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW---TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 312 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~---~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~ 312 (427)
+.|..+.|+|....|++++.|.+|++|+-... .+ ..+.+|...|.+++|++.|..|+++ ++++++.+|.......
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~~~~~~~ 229 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC-SDDGTVSIWRLYTDLS 229 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe-cCCcceEeeeeccCcc
Confidence 99999999999999999999999999986632 23 3445888899999999999999875 6666888887664211
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE-EEeeeeeeeCCCCCCCce
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-SLSLIGFIRGPGDNPKPV 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 391 (427)
..++..+..++|. ...||+ ++.| +.|+||.-...+.- ......-..+..+. ...
T Consensus 230 ----------------~~~sr~~Y~v~W~--~~~IaS---~ggD---~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN 284 (312)
T KOG0645|consen 230 ----------------GMHSRALYDVPWD--NGVIAS---GGGD---DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN 284 (312)
T ss_pred ----------------hhcccceEeeeec--ccceEe---ccCC---CEEEEEEecCCCCCchHHHHHhhhccccc-ccc
Confidence 1133478999999 446777 5556 66999987653211 11111112222222 366
Q ss_pred eEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 392 AFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
+++|.|.. ..+|+.|..||.|.+|.+
T Consensus 285 sV~w~p~~--~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 285 SVQWNPKV--SNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eEEEcCCC--CCceeecCCCceEEEEEe
Confidence 99999953 457888889999999976
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.3e-28 Score=212.09 Aligned_cols=264 Identities=17% Similarity=0.293 Sum_probs=206.5
Q ss_pred CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN 177 (427)
Q Consensus 99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~ 177 (427)
.+.|..+.|.|+|++|++|+..|.+.||+...- ....+...|...|+++.|++++ ..+.+|.. +.|++|+.+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm--- 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM--- 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch---
Confidence 348999999999999999999999999987544 3445667899999999999999 66666655 8899998761
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcc----------------cCceEEeccCCeE
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPG----------------LGTPIRRGFGGLS 240 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~----------------~~~~~~~~~~~v~ 240 (427)
..+..+..++...|.+++|+| |.+++. ...++++|.-.|.
T Consensus 170 -----------------------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 170 -----------------------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred -----------------------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 234556666568999999998 444422 1134678889999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCcccc
Q 014302 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAH 317 (427)
Q Consensus 241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~ 317 (427)
++.|+|....|++++.|..|++||.+++.+.. ...|+..|..+.|+|++.+|++++.+. .++++++... ...+.+|
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehhHhHHHHHhhcc
Confidence 99999999999999999999999999999954 459999999999999999999875554 7777777742 1244455
Q ss_pred ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302 318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 397 (427)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 397 (427)
.. .|+++.|+|-..-|.++ |+.| |.|..|.+.....+ +.+.-+ ......+++|||
T Consensus 306 kk--------------dv~~~~WhP~~~~lfts--gg~D---gsvvh~~v~~~~p~-----~~i~~A-Hd~~iwsl~~hP 360 (464)
T KOG0284|consen 306 KK--------------DVTSLTWHPLNESLFTS--GGSD---GSVVHWVVGLEEPL-----GEIPPA-HDGEIWSLAYHP 360 (464)
T ss_pred hh--------------hheeeccccccccceee--ccCC---CceEEEeccccccc-----cCCCcc-cccceeeeeccc
Confidence 54 78999999988777775 7777 77999998733322 222222 223366899999
Q ss_pred CCCCCceeEEEeeCceEEEEecc
Q 014302 398 KFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 398 ~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
- |-+||.|..|..+.||.=-
T Consensus 361 l---Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 361 L---GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred c---ceeEeecCCCcceeeeccC
Confidence 7 8899999999999998743
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=4.7e-27 Score=220.91 Aligned_cols=240 Identities=17% Similarity=0.250 Sum_probs=192.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC-----------------------------CCcceeeccCCcCCeeEEEE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-----------------------------GKDACILTSDSQRDVKVLEW 151 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~-----------------------------~~~~~~~~~~~~~~v~~l~~ 151 (427)
.|+|..|++|+..||.|..|..|++|.+... .........+|.++|...+|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 7999999999999999999999999999741 01122234689999999999
Q ss_pred ccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce
Q 014302 152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP 231 (427)
Q Consensus 152 sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 231 (427)
+|+...+|.++.|.++++|.++ .+.++. .
T Consensus 460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V--------------------------~ 488 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLV--------------------------I 488 (707)
T ss_pred cccccceeeccCCcceeeeecc-------------------------cceeEE--------------------------E
Confidence 9999666666777999999998 222332 3
Q ss_pred EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
+++|..+|+.+.|+|.|-|+|+++.|++-++|......+. .+.+|-+.|.++.|+|+..|+++| +.+.++++|++...
T Consensus 489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG-SsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG-SSDRTVRLWDVSTG 567 (707)
T ss_pred ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC-CCCceEEEEEcCCC
Confidence 4557889999999999999999999999999999887774 455999999999999999999987 45558888888775
Q ss_pred CC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC
Q 014302 311 PP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 388 (427)
Q Consensus 311 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 388 (427)
.. .+.| |.++|.+|+|||+|++||+ |++| |.|.+||+.++.++ ..+.+. ..
T Consensus 568 ~~VRiF~G--------------H~~~V~al~~Sp~Gr~LaS---g~ed---~~I~iWDl~~~~~v-----~~l~~H--t~ 620 (707)
T KOG0263|consen 568 NSVRIFTG--------------HKGPVTALAFSPCGRYLAS---GDED---GLIKIWDLANGSLV-----KQLKGH--TG 620 (707)
T ss_pred cEEEEecC--------------CCCceEEEEEcCCCceEee---cccC---CcEEEEEcCCCcch-----hhhhcc--cC
Confidence 22 2333 4458899999999999999 8888 67999999998765 222233 33
Q ss_pred CceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302 389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 422 (427)
Q Consensus 389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~ 422 (427)
....++|..+ |.+|++|..|-.|.+|++-..
T Consensus 621 ti~SlsFS~d---g~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 621 TIYSLSFSRD---GNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceeEEEEecC---CCEEEecCCCCeEEEEEchhh
Confidence 3557888654 899999999999999998654
No 14
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=202.96 Aligned_cols=274 Identities=15% Similarity=0.211 Sum_probs=208.2
Q ss_pred CCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302 93 HVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169 (427)
Q Consensus 93 ~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i 169 (427)
+.+++.+| +|.-+.||++|++||+++.|.+..+|++..... +......+|..+|..+.||||..+++++|.+..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 44555566 899999999999999999999999999877622 223445679999999999999988999999988999
Q ss_pred EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe---------------
Q 014302 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR--------------- 234 (427)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~--------------- 234 (427)
||++ +| .+...+.......+.+.+|.|||..+.+|.+-+.
T Consensus 296 wDv~---------tg----------------d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~ 350 (519)
T KOG0293|consen 296 WDVD---------TG----------------DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE 350 (519)
T ss_pred ccCC---------cc----------------hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc
Confidence 9998 33 1222233223567889999999988776655211
Q ss_pred --ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC-
Q 014302 235 --GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP- 311 (427)
Q Consensus 235 --~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~- 311 (427)
....|.+++.++||+++++.+.|..|++|+..............++++++.|.||+++++.-... .+.+|++.+..
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e~~l 429 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ-EIHLWDLEENKL 429 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC-eeEEeecchhhH
Confidence 12458999999999999988899999999998877766667788999999999999988765444 78888887642
Q ss_pred -CCccccccccccccceeeccCCceeEEEEC-CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCC
Q 014302 312 -PSLDAHLLPVDLPDIVSLTGSQGIEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 389 (427)
Q Consensus 312 -~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 389 (427)
..+.||.... -|-.-||. .+..++|+ |++| +.|+||+..++.++.. +.|.. ..
T Consensus 430 v~kY~Ghkq~~------------fiIrSCFgg~~~~fiaS---GSED---~kvyIWhr~sgkll~~-----LsGHs--~~ 484 (519)
T KOG0293|consen 430 VRKYFGHKQGH------------FIIRSCFGGGNDKFIAS---GSED---SKVYIWHRISGKLLAV-----LSGHS--KT 484 (519)
T ss_pred HHHhhcccccc------------eEEEeccCCCCcceEEe---cCCC---ceEEEEEccCCceeEe-----ecCCc--ce
Confidence 2444444311 23333566 45678888 9998 7799999999988733 22332 34
Q ss_pred ceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
..|++|.|. ....+|.+..||+|.+|-.
T Consensus 485 vNcVswNP~--~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 485 VNCVSWNPA--DPEMFASASDDGTIRIWGP 512 (519)
T ss_pred eeEEecCCC--CHHHhhccCCCCeEEEecC
Confidence 669999997 4567999999999999854
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=215.30 Aligned_cols=239 Identities=17% Similarity=0.275 Sum_probs=184.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.+++++++|||+++|+|+.||.|+|||...+ -+......|...|+.+.|+..|..+|.++-||+|+.||+.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk------- 422 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK------- 422 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec-------
Confidence 8999999999999999999999999998887 5677778899999999999999667777788999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------eEEeccCCeEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------PIRRGFGGLSIL 242 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------~~~~~~~~v~~~ 242 (427)
++...+.+..+...+..|++..|.|.++..|. .+.+|.++|.++
T Consensus 423 ------------------RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 423 ------------------RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred ------------------ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 45566667666677778889888888754332 256799999999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCcccccc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLL 319 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~ 319 (427)
+|+|+|..|++++.|++||+||+-.... .....+...+.+++|+|||+.|++++-++ .|..|+.... ...+++...
T Consensus 485 ~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldg-qItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 485 SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDG-QITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred EEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecc-eEEEEEhhhceeeccccchhh
Confidence 9999999999999999999999866533 33346778899999999999999887655 6666665543 112222211
Q ss_pred ccc------cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 320 PVD------LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 320 ~~~------~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
... .-....-..+...+.+++|+||.+|++ |+.. ..|++|++..+-++
T Consensus 564 ~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA---gG~s---n~iCiY~v~~~vll 617 (893)
T KOG0291|consen 564 LSGGRKETDRITAENSAKGKTFTTICYSADGKCILA---GGES---NSICIYDVPEGVLL 617 (893)
T ss_pred ccccccccceeehhhcccCCceEEEEEcCCCCEEEe---cCCc---ccEEEEECchhhee
Confidence 110 000111122347899999999999988 6666 34999999876543
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=210.58 Aligned_cols=270 Identities=14% Similarity=0.237 Sum_probs=206.0
Q ss_pred CCCCCCCC--ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302 93 HVHLLPEV--DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169 (427)
Q Consensus 93 ~~~~l~~~--~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i 169 (427)
.+..+.+| .|+++.|.| .+.+|++++.|+.|+||++-.. ......+.+|..+|.+++|+.+|..+|.++.|+.+++
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45566777 899999999 8889999999999999999874 3577788899999999999999999999999999999
Q ss_pred EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-CcccCce-----------------
Q 014302 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-FPGLGTP----------------- 231 (427)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~----------------- 231 (427)
||++ +| .+...+. ....++|+.|+||+. .+..|..
T Consensus 285 wDtE---------TG----------------~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 285 WDTE---------TG----------------QVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred eccc---------cc----------------eEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 9998 44 3333333 456788999999983 3222211
Q ss_pred EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
+..|-+.|..+.|-++|++++++++|++++||+.+..-..... .......++..+|++.++++- +-++.+.++.+..
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ-s~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ-SMDNYIAIFSTVP 416 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh-ccCceEEEEeccc
Confidence 2237789999999999999999999999999999887765544 444566788899999999854 4454666665544
Q ss_pred C-----CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 310 K-----PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 310 ~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
+ ...++||... |--..+.|||||++|++ |+.| |.+.+||.++..++.. +.+.
T Consensus 417 ~~r~nkkK~feGh~va------------Gys~~v~fSpDG~~l~S---Gdsd---G~v~~wdwkt~kl~~~-----lkah 473 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVA------------GYSCQVDFSPDGRTLCS---GDSD---GKVNFWDWKTTKLVSK-----LKAH 473 (503)
T ss_pred ccccCHhhhhcceecc------------CceeeEEEcCCCCeEEe---ecCC---ccEEEeechhhhhhhc-----cccC
Confidence 2 2244555442 35678899999999988 7777 7799999998877632 2222
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
..-.+.+.|||.. ...+|.|.-+|.|.+|+
T Consensus 474 --~~~ci~v~wHP~e--~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 --DQPCIGVDWHPVE--PSKVATCGWDGLIKIWD 503 (503)
T ss_pred --CcceEEEEecCCC--cceeEecccCceeEecC
Confidence 1225578899974 34677777899999985
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.5e-24 Score=195.05 Aligned_cols=271 Identities=15% Similarity=0.226 Sum_probs=176.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~ 177 (427)
=|+|+.|+|||.++|+++.||++.+||=.++ +..... .+|.+.|.+++|+||+.+++.++.|.+++|||+....-
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 5999999999999999999999999886665 333333 36999999999999998888889999999999972110
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC--------CCCCC--cc-----cCceEEeccCCeEEE
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--------PDGRF--PG-----LGTPIRRGFGGLSIL 242 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------pdg~~--l~-----~~~~~~~~~~~v~~~ 242 (427)
...+.-... ...+...+-|. -+|.+ +. .-..+.+|...|+++
T Consensus 270 -----------v~t~~~~~~------------v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 270 -----------VSTWPMGST------------VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred -----------EEEeecCCc------------hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 000000000 00111112221 11211 00 123467799999999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECC---------------------------------
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDP--------------------------------- 287 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~sp--------------------------------- 287 (427)
..+|++++|++|+.||.|.-||..++...++ ..|...|.+++-+.
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 9999999999999999999999887765433 23444444444333
Q ss_pred -----------------------------------------------CCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302 288 -----------------------------------------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 320 (427)
Q Consensus 288 -----------------------------------------------dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 320 (427)
+++.+++|+.++ .+.++.+....
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg-kvhvysl~g~~--------- 476 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG-KVHVYSLSGDE--------- 476 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc-eEEEEEecCCc---------
Confidence 222222221111 22222222110
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
-.++.....+.+.|+.+++|||+.|||++ ... +.|.+||+.+.... ...-+| ...+..|++|.|+
T Consensus 477 -l~ee~~~~~h~a~iT~vaySpd~~yla~~---Da~---rkvv~yd~~s~~~~-~~~w~F-----HtakI~~~aWsP~-- 541 (603)
T KOG0318|consen 477 -LKEEAKLLEHRAAITDVAYSPDGAYLAAG---DAS---RKVVLYDVASREVK-TNRWAF-----HTAKINCVAWSPN-- 541 (603)
T ss_pred -ccceeeeecccCCceEEEECCCCcEEEEe---ccC---CcEEEEEcccCcee-cceeee-----eeeeEEEEEeCCC--
Confidence 01112334566799999999999999994 333 66999999988762 211122 3345779999998
Q ss_pred CCceeEEEeeCceEEEEecccc
Q 014302 401 QGPLLSVCWSSGFCCTYPLIFR 422 (427)
Q Consensus 401 ~g~~l~v~~~~g~i~~~~~~~~ 422 (427)
..++|.|.-|-.|.+|.+-=+
T Consensus 542 -n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 542 -NKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred -ceEEEeccccceEEEEEccCh
Confidence 568999999999999986443
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9.4e-25 Score=209.59 Aligned_cols=243 Identities=16% Similarity=0.226 Sum_probs=184.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|.++.|+|+|++|++++.|+.+++|+.............+|...|.+++|+|++..++.++.|.+++|||+..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------ 234 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------ 234 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC------
Confidence 89999999999999999999999999996552113333367999999999999995444445569999999940
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
....+. .+++|...|++++|+|+|+++++|+.|++|
T Consensus 235 ------------------~~~~~~--------------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 235 ------------------DGRNLK--------------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTV 270 (456)
T ss_pred ------------------CCeEEE--------------------------EecCCCCceEEEEecCCCCEEEEecCCCcE
Confidence 112222 445678889999999999999999999999
Q ss_pred EEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC----CccccccccccccceeeccCCce
Q 014302 261 YLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP----SLDAHLLPVDLPDIVSLTGSQGI 335 (427)
Q Consensus 261 ~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i 335 (427)
+|||++++++ ..+..|...|.+++|+++|++|+++ +.++.+++|++..... .+.++.. .. .+
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~-----------~~-~~ 337 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAEN-----------SA-PV 337 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCC-----------CC-ce
Confidence 9999999887 4555999999999999999999987 5577888888887631 1111111 11 57
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC-CCCCceeEEEeeCceE
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK-FKQGPLLSVCWSSGFC 414 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~g~~l~v~~~~g~i 414 (427)
+.+.|+|++++|++ +..| +++++||+..+.+... ..+.... ..|+ |.+. +..+..+.+|..++.|
T Consensus 338 ~~~~fsp~~~~ll~---~~~d---~~~~~w~l~~~~~~~~-----~~~~~~~--~~~~-~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLS---ASLD---RTLKLWDLRSGKSVGT-----YTGHSNL--VRCI-FSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred eEEEECCCCcEEEE---ecCC---CeEEEEEccCCcceee-----ecccCCc--ceeE-ecccccCCCCeEEEEeCCceE
Confidence 99999999999999 5666 5699999998776522 2222111 1232 3332 4468899999999999
Q ss_pred EEEecc
Q 014302 415 CTYPLI 420 (427)
Q Consensus 415 ~~~~~~ 420 (427)
++|++-
T Consensus 404 ~~~~~~ 409 (456)
T KOG0266|consen 404 YVWDSS 409 (456)
T ss_pred EEEeCC
Confidence 999964
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=5.3e-25 Score=183.35 Aligned_cols=236 Identities=16% Similarity=0.189 Sum_probs=170.7
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
+.+.+| .|..+..++||++.++++.|+++++||+..+ +......+|...|.+++|+||..+++..+.|+++++|++
T Consensus 57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 334444 8999999999999999999999999999988 666777899999999999999944444445599999998
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC--CCcccC-----------------ceEE
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RFPGLG-----------------TPIR 233 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~-----------------~~~~ 233 (427)
- +.. .....+..+..-|+|+.|+|+. -++..+ ..+.
T Consensus 135 ~-----------------------g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 135 L-----------------------GVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred c-----------------------ccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 6 111 1111122227789999999985 222211 1234
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302 234 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 313 (427)
Q Consensus 234 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~ 313 (427)
+|.+.++.+++||||..+++|+.||.+.+||++.++......+...|.+++|+|+...|+.+ .+. .|++|++..+...
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~-sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TAT-SIKIWDLESKAVV 267 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCC-ceEEEeccchhhh
Confidence 57888999999999999999999999999999999997777899999999999976666544 333 5788887775321
Q ss_pred ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.+-. .+..........-...+++|++||..|.. |-.| +.|++|.+.
T Consensus 268 ~~l~---~d~~g~s~~~~~~~clslaws~dG~tLf~---g~td---~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELK---LDGIGPSSKAGDPICLSLAWSADGQTLFA---GYTD---NVIRVWQVA 313 (315)
T ss_pred hhcc---ccccccccccCCcEEEEEEEcCCCcEEEe---eecC---CcEEEEEee
Confidence 1000 00000000011114568899999999977 5555 559999874
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=5.8e-25 Score=188.93 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=208.1
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
.++.+| .|+|+++.|.++++++|+.|++++|||+.++ +......+|...|..+++|+-..+++++|.++.|+.||+
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 345566 8999999999999999999999999999998 667777889999999999999988888888899999999
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEec
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRG 235 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~ 235 (427)
. .-+.++.+.+| ...|.+++.+|.-..+.++. .+.+|
T Consensus 223 e-------------------------~nkvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 223 E-------------------------YNKVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred h-------------------------hhhhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence 8 22456667777 88999999999766655442 25668
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--C
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--P 312 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~ 312 (427)
...|..+.+.|....+++|+.|++|++||++.++.. ....|+..+.+++.+|....+++++ .+ .+..|.+..+. .
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchhh
Confidence 899999999999999999999999999999998874 4558999999999999888777654 33 57777777652 1
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC-CCCCCce
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPV 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~ 391 (427)
.+.+|.. -|+.++...||- +++ |++. |.|.+||.+++..++....-.--|. .......
T Consensus 355 nlsgh~~--------------iintl~~nsD~v-~~~---G~dn---g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 355 NLSGHNA--------------IINTLSVNSDGV-LVS---GGDN---GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred ccccccc--------------eeeeeeeccCce-EEE---cCCc---eEEEEEecCcCcccccccccccCCcccccccee
Confidence 2333333 678999888874 444 5554 8899999999887644311110111 1223345
Q ss_pred eEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 392 AFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+.+|.. .|.-|..|-.|-.|.+|-
T Consensus 414 as~fDk---tg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 414 ASCFDK---TGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEeecc---cCceEEeccCCcceEEEe
Confidence 666754 377788888999999984
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=3.7e-24 Score=193.49 Aligned_cols=259 Identities=19% Similarity=0.316 Sum_probs=192.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|++++|+|++++|++++.|+.+++|++... ........|...+..+.|+|++..+++++.++.+.+|++...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~----- 83 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG----- 83 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-----
Confidence 7999999999999999999999999999876 344455678888999999999954555555799999999710
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~ 243 (427)
.....+..+ ...+.++.|+++++++..+. .+..|...+.+++
T Consensus 84 --------------------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 84 --------------------ECVRTLTGH-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred --------------------cceEEEecc-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 122223333 55788999999876644322 1223667799999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLP 320 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 320 (427)
|+|+++++++++.++.|++||+++.+.. .+..+...+.+++|+|+++.+++++. ++.+.+|++..... .+.
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~----- 216 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLR----- 216 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchh-----
Confidence 9999999998888999999999877663 34477789999999999988888765 55788887765311 111
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
.+...+.+++|+|++.++++ ++.+ +.|++|++.++...... .. ......+++|.|+
T Consensus 217 ---------~~~~~i~~~~~~~~~~~~~~---~~~~---~~i~i~~~~~~~~~~~~-----~~--~~~~i~~~~~~~~-- 272 (289)
T cd00200 217 ---------GHENGVNSVAFSPDGYLLAS---GSED---GTIRVWDLRTGECVQTL-----SG--HTNSVTSLAWSPD-- 272 (289)
T ss_pred ---------hcCCceEEEEEcCCCcEEEE---EcCC---CcEEEEEcCCceeEEEc-----cc--cCCcEEEEEECCC--
Confidence 22337899999999888877 4434 66999999876554222 12 1223668889886
Q ss_pred CCceeEEEeeCceEEEEe
Q 014302 401 QGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 401 ~g~~l~v~~~~g~i~~~~ 418 (427)
+..|+++..+|.|.+|+
T Consensus 273 -~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 -GKRLASGSADGTIRIWD 289 (289)
T ss_pred -CCEEEEecCCCeEEecC
Confidence 67889999999999984
No 22
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=196.21 Aligned_cols=278 Identities=11% Similarity=0.117 Sum_probs=199.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|+++.|||..++|++++.|++++||.++......+...+-...+|.+..|.|+|...+++++. .....||+..
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~----- 289 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET----- 289 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc-----
Confidence 8999999999999999999999999999887444555445566789999999999746655555 7788999971
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------EE--eccCCeEEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------IR--RGFGGLSILK 243 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~~--~~~~~v~~~~ 243 (427)
. +...+..+.+.....+..+..+|++++++.... +. ...+.+..++
T Consensus 290 ----a--------------k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~ 351 (514)
T KOG2055|consen 290 ----A--------------KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFT 351 (514)
T ss_pred ----c--------------ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEE
Confidence 1 222233333443455667888888887552211 10 1246788999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCccc-cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc-cccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL-DAHLLP 320 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 320 (427)
|+.||+.|++++.+|.|++||++...+.. +. ...-.-+++|.|++|++||+|+..+ ++++++....+ .....|
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G----iVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG----IVNIYDGNSCFASTNPKP 427 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc----eEEEeccchhhccCCCCc
Confidence 99999999988889999999999998744 33 3333456888999999999876555 66666642222 122222
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
+ .........|++|.|++|++.||.|+.... ..+++-.+.+..++...|.. +.+.. .+.|++|.|.
T Consensus 428 i----k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k----nalrLVHvPS~TVFsNfP~~--n~~vg--~vtc~aFSP~-- 493 (514)
T KOG2055|consen 428 I----KTVDNLTTAITSLQFNHDAQILAIASRVKK----NALRLVHVPSCTVFSNFPTS--NTKVG--HVTCMAFSPN-- 493 (514)
T ss_pred h----hhhhhhheeeeeeeeCcchhhhhhhhhccc----cceEEEeccceeeeccCCCC--CCccc--ceEEEEecCC--
Confidence 2 111112238999999999999999765554 35999888887777665533 22233 3669999997
Q ss_pred CCceeEEEeeCceEEEEecc
Q 014302 401 QGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 401 ~g~~l~v~~~~g~i~~~~~~ 420 (427)
+..||+|...|++.+|-|-
T Consensus 494 -sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 -SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CceEEeecCCCceeeEeec
Confidence 6689999999999999874
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=177.36 Aligned_cols=224 Identities=15% Similarity=0.223 Sum_probs=175.0
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
..|+.+...|++..||+++ ...||+||+++....+...+.+|.+.|+++.|.-+| +.+.+|++ |+++|||+..
T Consensus 41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~---- 114 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRS---- 114 (311)
T ss_pred cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccC----
Confidence 3799999999999999884 678999999998666788888999999999999999 66666655 9999999981
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------eEEeccCCeE
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------PIRRGFGGLS 240 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------~~~~~~~~v~ 240 (427)
..+.+.++ ...+|+++..+|+...|..+. .++.....+.
T Consensus 115 ---------------------~~~qR~~~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 115 ---------------------LSCQRNYQ--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred ---------------------cccchhcc--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 12222222 358889999998654433221 1233346789
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEcCCCCc-------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-C-
Q 014302 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-P- 311 (427)
Q Consensus 241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~- 311 (427)
++...|||.+|+.+...|..++|++-.... .++..|.+.+..+.+|||+++|++++++. ++++|+..+. +
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~~~~~kl 250 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK-TVKIWNTDDFFKL 250 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-eEEEEecCCceee
Confidence 999999999999999999999999876543 23448999999999999999999875555 8888887764 1
Q ss_pred -CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 312 -PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 312 -~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
..+++ +...++.++||.||+||++ ++.| +.+++|++..++.+
T Consensus 251 e~~l~g--------------h~rWvWdc~FS~dg~YlvT---assd---~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 251 ELVLTG--------------HQRWVWDCAFSADGEYLVT---ASSD---HTARLWDLSAGKEV 293 (311)
T ss_pred EEEeec--------------CCceEEeeeeccCccEEEe---cCCC---CceeecccccCcee
Confidence 11222 2238999999999999988 7777 67999999988765
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=6.5e-26 Score=197.83 Aligned_cols=223 Identities=16% Similarity=0.286 Sum_probs=175.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|+++.|+++|.++++|..+|.|++|+.+-. ........|...|++++|||+...++.++.|++|+|||...+
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----- 212 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----- 212 (464)
T ss_pred cceeEEEccCCCEEEEcCCCceEEecccchh--hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-----
Confidence 8999999999999999999999999987765 344444456689999999998866777777799999998722
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~~~~ 243 (427)
+....+++| .-.|.++.|+|...+++++.. +..|...|..+.
T Consensus 213 --------------------kee~vL~GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 213 --------------------KEERVLRGH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred --------------------chhheeccC-CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 233456666 778999999998877765532 334778899999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 322 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (427)
|+|++++|++++.|..++++|+++.+. ..+.+|+..+.++.|+|-..-|++.+..++.+..|.+.-..+..
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~-------- 343 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG-------- 343 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc--------
Confidence 999999999999999999999996655 55568999999999999887777766777677777766321100
Q ss_pred cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.....+.+.|++|+|+|-|..||+ |++| .++++|.-.
T Consensus 344 ---~i~~AHd~~iwsl~~hPlGhil~t---gsnd---~t~rfw~r~ 380 (464)
T KOG0284|consen 344 ---EIPPAHDGEIWSLAYHPLGHILAT---GSND---RTVRFWTRN 380 (464)
T ss_pred ---CCCcccccceeeeeccccceeEee---cCCC---cceeeeccC
Confidence 011224458999999999999988 8888 569999753
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=3.7e-24 Score=180.11 Aligned_cols=262 Identities=16% Similarity=0.267 Sum_probs=190.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|+.+.|+|+|.+||+|+.|..|.+|++..... -.-...+|.+.|+.+.|.+|+..++.+|.|.++..||++
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~------- 120 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE------- 120 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEecccccc-ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-------
Confidence 899999999999999999999999999766522 223335899999999999999888888999999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEe-----------CCCCCCc----ccCceEEe--ccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-----------GPDGRFP----GLGTPIRR--GFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------spdg~~l----~~~~~~~~--~~~~v~~~~ 243 (427)
+| ++....+.| ...|..+.- ++|+..- .....++. ....++++.
T Consensus 121 --tG----------------~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 121 --TG----------------KRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred --cc----------------eeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEE
Confidence 32 333334444 344443332 2222210 00001111 134688999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC------ccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS------LDA 316 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~------~~~ 316 (427)
|..++..+.+|+-|+.|++||++.... ....+|...|+.+..+|+|.++++-+ -+.++++|++....+. +.+
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCCCceEEEeec
Confidence 999999999999999999999998887 45559999999999999999998654 4448888877664221 112
Q ss_pred cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302 317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 396 (427)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 396 (427)
|.... .-....++|+|+++++.. |+.| ..+++||..+..++-.. ++......+++||
T Consensus 261 ~~hnf----------eknlL~cswsp~~~~i~a---gs~d---r~vyvwd~~~r~~lykl-------pGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 261 HIHNF----------EKNLLKCSWSPNGTKITA---GSAD---RFVYVWDTTSRRILYKL-------PGHYGSVNEVDFH 317 (338)
T ss_pred chhhh----------hhhcceeeccCCCCcccc---cccc---ceEEEeecccccEEEEc-------CCcceeEEEeeec
Confidence 21111 114567899999999988 7888 45999999886665222 3444557799999
Q ss_pred cCCCCCceeEEEeeCceEEE
Q 014302 397 DKFKQGPLLSVCWSSGFCCT 416 (427)
Q Consensus 397 ~~~~~g~~l~v~~~~g~i~~ 416 (427)
|. ..+|..|.+|-+|.+
T Consensus 318 p~---e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 318 PT---EPIILSCSSDKTIYL 334 (338)
T ss_pred CC---CcEEEEeccCceeEe
Confidence 97 678888889988865
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.7e-23 Score=195.67 Aligned_cols=259 Identities=17% Similarity=0.324 Sum_probs=199.2
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC--CeEEEEeccCCCC
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN 177 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~--~~i~iw~~~~~~~ 177 (427)
..|++.+||+.-..||+|-.+|...+|++..- .......-.+..|..++|+..| ..||.|+. +.+.||++.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f--~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWq---- 338 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF--NLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQ---- 338 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCc--eEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEee----
Confidence 47899999999999999999999999988766 3333333345679999999999 67777766 689999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeE
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLS 240 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~ 240 (427)
. +.+.+ ..++| ...+++++++|||+++++|.. +..|..+|+
T Consensus 339 -----s---------------EsYVl-KQQgH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 339 -----S---------------ESYVL-KQQGH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT 396 (893)
T ss_pred -----c---------------cceee-ecccc-ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence 1 11222 24445 889999999999999887632 445889999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccc
Q 014302 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDA 316 (427)
Q Consensus 241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~ 316 (427)
.+.|+..|+.+++++-||+||.||+....+-+ +. .......+++-.|.|..+..|+.+.=.|++|.+...+. .+.|
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 99999999999999999999999998877733 33 33344567777888988877665555677777776522 3444
Q ss_pred cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC--ceEEEeeeeeeeCCCCCCCceeEE
Q 014302 317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFS 394 (427)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
|.. +|.+++|+|+|..||+ ++.| .+|++||+-.. ....+. ....++.++
T Consensus 477 HEg--------------PVs~l~f~~~~~~LaS---~SWD---kTVRiW~if~s~~~vEtl~---------i~sdvl~vs 527 (893)
T KOG0291|consen 477 HEG--------------PVSGLSFSPDGSLLAS---GSWD---KTVRIWDIFSSSGTVETLE---------IRSDVLAVS 527 (893)
T ss_pred CCC--------------cceeeEEccccCeEEe---cccc---ceEEEEEeeccCceeeeEe---------eccceeEEE
Confidence 444 7899999999999999 8888 77999998543 222111 112367899
Q ss_pred eccCCCCCceeEEEeeCceEEEEec
Q 014302 395 FHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 395 f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
|.|+ |.-|||++.||.|.+|+.
T Consensus 528 frPd---G~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 528 FRPD---GKELAVATLDGQITFFDI 549 (893)
T ss_pred EcCC---CCeEEEEEecceEEEEEh
Confidence 9997 788999999999999985
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=173.87 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=195.1
Q ss_pred EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccc
Q 014302 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL 192 (427)
Q Consensus 113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 192 (427)
+|++++.|.+||+|...++ ............|+.+...||+ +.||+++...|++||++ ++
T Consensus 12 iLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~qhvRlyD~~---------S~-------- 71 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDK-KDLAAAGNQHVRLYDLN---------SN-------- 71 (311)
T ss_pred EEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCc-chhhhccCCeeEEEEcc---------CC--------
Confidence 8999999999999999888 4444444456789999999999 88999999999999998 11
Q ss_pred cCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce----------------EEeccCCeEEEEEccCCCEEEEEec
Q 014302 193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP----------------IRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------------~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
.-.++..+.+| ...|+.+.|..||+++.+|.. .-.+..+|.++..+|+...|++|..
T Consensus 72 ------np~Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 72 ------NPNPVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred ------CCCceeEEecc-CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC
Confidence 11245567776 788999999999999776643 1226689999999999999999999
Q ss_pred CCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302 257 DGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 257 dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
+|.|++||+....+. ........|.++...|||++|+.+ .+.|..++|++-... ...++.|+ .+...+.+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~~~--~~s~l~P~----~k~~ah~~~ 217 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLNHQ--TASELEPV----HKFQAHNGH 217 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccCCC--ccccceEh----hheecccce
Confidence 999999999988763 333666889999999999999855 666699999987732 11222222 223345668
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 414 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i 414 (427)
|..+.+|||+++||+| +.| .+++||+..+--..++... +.. .=.-.++|..+ |.-|-.|.+|+..
T Consensus 218 il~C~lSPd~k~lat~---ssd---ktv~iwn~~~~~kle~~l~----gh~--rWvWdc~FS~d---g~YlvTassd~~~ 282 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATC---SSD---KTVKIWNTDDFFKLELVLT----GHQ--RWVWDCAFSAD---GEYLVTASSDHTA 282 (311)
T ss_pred EEEEEECCCCcEEEee---cCC---ceEEEEecCCceeeEEEee----cCC--ceEEeeeeccC---ccEEEecCCCCce
Confidence 9999999999999995 445 6799999987622222211 111 11224556543 6668888899999
Q ss_pred EEEecccc
Q 014302 415 CTYPLIFR 422 (427)
Q Consensus 415 ~~~~~~~~ 422 (427)
.+|++.-.
T Consensus 283 rlW~~~~~ 290 (311)
T KOG0315|consen 283 RLWDLSAG 290 (311)
T ss_pred eecccccC
Confidence 99997543
No 28
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1e-24 Score=185.14 Aligned_cols=265 Identities=14% Similarity=0.166 Sum_probs=199.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc------eeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA------CILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~------~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
.+-|..|||||++|++|+.||-|.||++.++.... .....-+...|.|+.||.|. ..||+|+. |.|++|.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEe
Confidence 68899999999999999999999999998872111 11112377899999999998 78888765 999999998
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------ceEEecc
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------TPIRRGF 236 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~~~~ 236 (427)
+| .|++.++..+...|+++.|+.|+..+.++ ..+++|.
T Consensus 294 ---------tG----------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs 348 (508)
T KOG0275|consen 294 ---------TG----------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS 348 (508)
T ss_pred ---------cc----------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence 44 56676775558889999999998764432 2356788
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP- 312 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~- 312 (427)
.-|....|.+||.++++++.||+|++|+.++.+|.. +. +....|.++..-|.+.--+..++..++++++++.....
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 889999999999999999999999999999999843 33 66778899988887654444567777888888876511
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 392 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
.+. . ....++..-+.+.||.|.|+.+ .++| +.++.|.+.++.+....+. ....++.
T Consensus 429 sfs---------S--GkREgGdFi~~~lSpkGewiYc---igED---~vlYCF~~~sG~LE~tl~V-------hEkdvIG 484 (508)
T KOG0275|consen 429 SFS---------S--GKREGGDFINAILSPKGEWIYC---IGED---GVLYCFSVLSGKLERTLPV-------HEKDVIG 484 (508)
T ss_pred eec---------c--CCccCCceEEEEecCCCcEEEE---EccC---cEEEEEEeecCceeeeeec-------ccccccc
Confidence 110 0 0112345567789999999977 6677 7899999999887543321 2223677
Q ss_pred EEeccCCCCCceeEEEeeCceEEEEe
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
++.||. ..+||.=..||.+.+|.
T Consensus 485 l~HHPH---qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 485 LTHHPH---QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccCcc---cchhhhhcccchhhhcC
Confidence 888986 45777777888888773
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=174.44 Aligned_cols=225 Identities=19% Similarity=0.363 Sum_probs=173.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|++++|+|.|++||+|+.|.++.||.-.....+......+|...|.+++||++| .+||++++ +.|-||.++
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~d------ 135 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEID------ 135 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEec------
Confidence 8999999999999999999999999987766666777888999999999999999 78887765 889999987
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEeccCCe
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRRGFGGL 239 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~~~~~v 239 (427)
...++.+...+..| ...|..+.|+|...+|.+++ .+..|..-|
T Consensus 136 ----------------eddEfec~aVL~~H-tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV 198 (312)
T KOG0645|consen 136 ----------------EDDEFECIAVLQEH-TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV 198 (312)
T ss_pred ----------------CCCcEEEEeeeccc-cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE
Confidence 23477888888888 88999999999877766442 244567789
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCcccc
Q 014302 240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAH 317 (427)
Q Consensus 240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~ 317 (427)
++++|++.|..|++++.|++|+||...+. ....|...+..+.|. .-.|++++.++ .|.++.-.+.+ +.+
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~-~i~lf~~s~~~d~p~~--- 269 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDD-AIRLFKESDSPDEPSW--- 269 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCC-EEEEEEecCCCCCchH---
Confidence 99999999999999999999999986521 122577889999998 34566665555 66665555421 111
Q ss_pred ccccccccceeeccCCceeEEEECCC-CCEEEEEEecCCCcceeEEEEEEec
Q 014302 318 LLPVDLPDIVSLTGSQGIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.+-......|...|+++.|+|. ..+|++ +++| |.|++|.+.
T Consensus 270 ----~l~~~~~~aHe~dVNsV~w~p~~~~~L~s---~~DD---G~v~~W~l~ 311 (312)
T KOG0645|consen 270 ----NLLAKKEGAHEVDVNSVQWNPKVSNRLAS---GGDD---GIVNFWELE 311 (312)
T ss_pred ----HHHHhhhcccccccceEEEcCCCCCceee---cCCC---ceEEEEEec
Confidence 0001112234558999999995 567777 7777 889999874
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=8.4e-24 Score=177.32 Aligned_cols=218 Identities=14% Similarity=0.180 Sum_probs=176.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC----CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~ 176 (427)
.|..++|+|.|+++|.|+.|....||++... .........+|.+.+.++.|-+|+ ++|.+++|.+..+||++
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie--- 174 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE--- 174 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc---
Confidence 7899999999999999999999999999854 112334467899999999999987 88888899999999998
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccC-----------------ceEEeccCC
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLG-----------------TPIRRGFGG 238 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~-----------------~~~~~~~~~ 238 (427)
++ +.++.+.+| ...|.+++++| +++...+| +.+.+|...
T Consensus 175 ------~g----------------~~~~~f~GH-~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 175 ------TG----------------QQTQVFHGH-TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred ------cc----------------eEEEEecCC-cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence 33 567778887 89999999999 88775443 235678899
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCC
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPS 313 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~ 313 (427)
|.+++|.|+|.-+++|++|++.|+||++..+..... .....|++++||..|++|+.+. ++.+..+|+.-.. ...
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~vg~ 310 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERVGV 310 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceEEE
Confidence 999999999999999999999999999988764333 4556899999999999998764 4445556654432 123
Q ss_pred ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
+.+| .+.|+++..+|||.-|++ |+.| .+|+||.
T Consensus 311 L~GH--------------eNRvScl~~s~DG~av~T---gSWD---s~lriW~ 343 (343)
T KOG0286|consen 311 LAGH--------------ENRVSCLGVSPDGMAVAT---GSWD---STLRIWA 343 (343)
T ss_pred eecc--------------CCeeEEEEECCCCcEEEe---cchh---HheeecC
Confidence 3333 348999999999999988 8888 5699994
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=4e-23 Score=212.74 Aligned_cols=277 Identities=10% Similarity=0.146 Sum_probs=189.6
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC---C--cceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---K--DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPS 173 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~---~--~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~ 173 (427)
..|.+++|+|+|++||+|+.|+.|+||++.... . ........+...|.+++|+|....+|+++ .++.|++||+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 379999999999999999999999999976421 0 01111223456799999998644566665 46999999997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCce--------------EE--ecc
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGTP--------------IR--RGF 236 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~--------------~~--~~~ 236 (427)
....+..+..| ...|++++|+| ++.+++++.. +. .+.
T Consensus 564 -------------------------~~~~~~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 564 -------------------------RSQLVTEMKEH-EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred -------------------------CCeEEEEecCC-CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 11344445555 78899999997 7777654321 10 123
Q ss_pred CCeEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302 237 GGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 313 (427)
Q Consensus 237 ~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~ 313 (427)
..+.++.|+ ++|.+|++|+.|+.|++||++..+. ..+..|...|.++.|. ++.+|++++ .++.+.+|++......
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISG 695 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccc
Confidence 567888885 5789999999999999999987653 3345899999999997 678888765 4558888887542110
Q ss_pred ccccccccccccceee-ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee---eeeeeC---CCC
Q 014302 314 LDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL---IGFIRG---PGD 386 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~---~~~~~~---~~~ 386 (427)
... .....+ .+...+..++|+|++.+||+ ++.| +.|++|+........... ...+.+ ...
T Consensus 696 ~~~-------~~l~~~~gh~~~i~~v~~s~~~~~las---gs~D---~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~ 762 (793)
T PLN00181 696 INE-------TPLHSFMGHTNVKNFVGLSVSDGYIAT---GSET---NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA 762 (793)
T ss_pred cCC-------cceEEEcCCCCCeeEEEEcCCCCEEEE---EeCC---CEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence 000 001111 23347889999999999999 6666 679999986543221110 001111 111
Q ss_pred CCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 387 ~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
.....+++|.|+ +..|++|.++|.|.+|++.
T Consensus 763 ~~~V~~v~ws~~---~~~lva~~~dG~I~i~~~~ 793 (793)
T PLN00181 763 SQFISSVCWRGQ---SSTLVAANSTGNIKILEMV 793 (793)
T ss_pred CcEEEEEEEcCC---CCeEEEecCCCcEEEEecC
Confidence 223568889885 6789999999999999873
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=2.8e-23 Score=186.94 Aligned_cols=248 Identities=19% Similarity=0.286 Sum_probs=174.2
Q ss_pred CCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC----Ce
Q 014302 93 HVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GG 166 (427)
Q Consensus 93 ~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~----~~ 166 (427)
...+..+| .++...|||.|.|+|+|...|+|||||................++|.+++|++|+++++|+|.. +.
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 34444555 8999999999999999999999999998775222222333467899999999999888888843 45
Q ss_pred EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC------------cccCce---
Q 014302 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------------PGLGTP--- 231 (427)
Q Consensus 167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~------------l~~~~~--- 231 (427)
+.+||... .+-.+.+| ...|.++.|-|.--+ +..|.+
T Consensus 131 ~F~~DSG~---------------------------SvGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF 182 (603)
T KOG0318|consen 131 VFLWDSGN---------------------------SVGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF 182 (603)
T ss_pred EEEecCCC---------------------------ccceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee
Confidence 66787651 12223333 555555555543322 112223
Q ss_pred ---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc----ccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302 232 ---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGS 304 (427)
Q Consensus 232 ---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~ 304 (427)
++.|..-|.++.|+|||.++++.+.||+|.+||-.+++.... ..|++.|.+++|+||++.+++++ .+.++++
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-aDkt~KI 261 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-ADKTIKI 261 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-CCceEEE
Confidence 345788999999999999999999999999999999887322 28999999999999999999864 5558888
Q ss_pred eeeCCCCC--------Cc----------ccccccccccc------------ceee-ccCCceeEEEECCCCCEEEEEEec
Q 014302 305 IHFASKPP--------SL----------DAHLLPVDLPD------------IVSL-TGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 305 ~~~~~~~~--------~~----------~~~~~~~~~~~------------~~~~-~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
|++..... ++ ..|...+.+.. ...+ .|...|+++..+||+++|.+ +
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S---g 338 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS---G 338 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe---e
Confidence 88775311 00 11221111111 1111 23458999999999999977 7
Q ss_pred CCCcceeEEEEEEeccCceEEE
Q 014302 354 GDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
+.| |.|.-|+..++....+
T Consensus 339 syD---G~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 339 SYD---GHINSWDSGSGTSDRL 357 (603)
T ss_pred ccC---ceEEEEecCCcccccc
Confidence 777 7799999988765533
No 33
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.4e-22 Score=194.13 Aligned_cols=215 Identities=13% Similarity=0.184 Sum_probs=155.1
Q ss_pred CCCCCC--ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEccCCCceEEEe-cCC
Q 014302 95 HLLPEV--DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKG 165 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~ 165 (427)
.++.+| .|++++|+| ++++||+|+.|++|+|||+..... .......+|...|.+++|+|++..+|+++ .|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 345566 899999999 888999999999999999976421 23445568999999999999875666665 569
Q ss_pred eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc
Q 014302 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS 245 (427)
Q Consensus 166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s 245 (427)
.|+|||+. ++ .... .+..|...|.+++|+
T Consensus 149 tVrIWDl~---------tg----------------~~~~--------------------------~l~~h~~~V~sla~s 177 (493)
T PTZ00421 149 VVNVWDVE---------RG----------------KAVE--------------------------VIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEECC---------CC----------------eEEE--------------------------EEcCCCCceEEEEEE
Confidence 99999997 11 1111 233456789999999
Q ss_pred cCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCC-eeEEEECCCCCEEEEEEc---CCceeeeeeeCCCCCCccccccc
Q 014302 246 PTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGF-VTGATWDPEGRMILLAFA---GSLTLGSIHFASKPPSLDAHLLP 320 (427)
Q Consensus 246 p~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~-v~~v~~spdg~~l~~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 320 (427)
|+|++|++++.|+.|++||+++++.. .+..|.+. ...+.|.+++..+++++. .++.+.+|++.+....+..
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~---- 253 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST---- 253 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE----
Confidence 99999999999999999999988763 33356543 457889999888876553 3457777777653211100
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
........+....|++++++|+++ +..| +.|++||+..+.++..
T Consensus 254 ------~~~d~~~~~~~~~~d~d~~~L~lg--gkgD---g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 254 ------VDLDQSSALFIPFFDEDTNLLYIG--SKGE---GNIRCFELMNERLTFC 297 (493)
T ss_pred ------eccCCCCceEEEEEcCCCCEEEEE--EeCC---CeEEEEEeeCCceEEE
Confidence 001112245667899999999885 3335 6799999998876543
No 34
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=6.5e-23 Score=169.40 Aligned_cols=260 Identities=17% Similarity=0.264 Sum_probs=187.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~ 179 (427)
.|.+++|+-+|..||+|+.|++++||+++...........+|.+.|-.+.|.|....+++++ +++.|++||+.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r------ 95 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR------ 95 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec------
Confidence 78999999999999999999999999998873333344567999999999999877777665 56999999997
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------EE--eccCCeEEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------IR--RGFGGLSILK 243 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~~--~~~~~v~~~~ 243 (427)
.+ +++..... ...=..+.|+|+|++++.+.. .. .....+..++
T Consensus 96 ---~~----------------k~~~~i~~--~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~ 154 (313)
T KOG1407|consen 96 ---SG----------------KCTARIET--KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEIS 154 (313)
T ss_pred ---cC----------------cEEEEeec--cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeee
Confidence 11 33332222 222346789999998654321 00 1224567788
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLP 320 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 320 (427)
|+-++.+++.....|+|.|......+.. .+..|.....++.|+|+|+++|+|+.+. .+-+|++.+... .+..
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-lvSLWD~~ELiC~R~isR---- 229 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-LVSLWDVDELICERCISR---- 229 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc-eeeccChhHhhhheeecc----
Confidence 9988888886666899999998877774 4458999999999999999999987665 344444433211 1111
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
..-+|+.++||.||++||+ +++| ..|-|=+++++..+--.++ .. ....++|||+
T Consensus 230 ----------ldwpVRTlSFS~dg~~lAS---aSED---h~IDIA~vetGd~~~eI~~-------~~-~t~tVAWHPk-- 283 (313)
T KOG1407|consen 230 ----------LDWPVRTLSFSHDGRMLAS---ASED---HFIDIAEVETGDRVWEIPC-------EG-PTFTVAWHPK-- 283 (313)
T ss_pred ----------ccCceEEEEeccCcceeec---cCcc---ceEEeEecccCCeEEEeec-------cC-CceeEEecCC--
Confidence 1128899999999999999 8988 5588888888876533222 11 2457999998
Q ss_pred CCceeEEEeeC---------ceEEEEec
Q 014302 401 QGPLLSVCWSS---------GFCCTYPL 419 (427)
Q Consensus 401 ~g~~l~v~~~~---------g~i~~~~~ 419 (427)
..|||.+.++ |.+.+|=|
T Consensus 284 -~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 284 -RPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred -CceeeEEecCCCCccccccceeEEecC
Confidence 5689988875 56666543
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=181.20 Aligned_cols=259 Identities=14% Similarity=0.172 Sum_probs=200.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
.|+.+-|+|+-..+++++.|++|++||+.++ +......+|...|.+++|+..| ++|++++ |-.+++||.+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~------ 180 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFD------ 180 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHH------
Confidence 8999999999999999999999999999998 5566678899999999999999 5666554 4459999997
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL 242 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~ 242 (427)
..+.++..+.+| ...|.+++|-|.|.++.+.. .++.|..-|..+
T Consensus 181 ------------------~~~~c~ks~~gh-~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 181 ------------------TFFRCIKSLIGH-EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred ------------------HHHHHHHHhcCc-ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 123455555666 78899999999988765432 255677889999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCC---------------CCEEEEEEcCCceeeeee
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPE---------------GRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spd---------------g~~l~~~~~~~~~i~~~~ 306 (427)
+.+.||..+++++.|.+|++|-+.++++. .+..|...|.+++|.|. ++++.+ .+.|++|++|+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s-~SrDktIk~wd 320 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS-GSRDKTIKIWD 320 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe-ecccceEEEEe
Confidence 99999999999999999999999999884 44589999999999874 245554 46666999999
Q ss_pred eCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 307 FASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 307 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
+..... ++.+| ...|..++|+|.|+||++| .+| ++++|||++++++....+ ..
T Consensus 321 v~tg~cL~tL~gh--------------dnwVr~~af~p~Gkyi~Sc---aDD---ktlrvwdl~~~~cmk~~~-----ah 375 (406)
T KOG0295|consen 321 VSTGMCLFTLVGH--------------DNWVRGVAFSPGGKYILSC---ADD---KTLRVWDLKNLQCMKTLE-----AH 375 (406)
T ss_pred ccCCeEEEEEecc--------------cceeeeeEEcCCCeEEEEE---ecC---CcEEEEEeccceeeeccC-----CC
Confidence 887633 33333 3489999999999999996 344 779999999988863321 11
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+. -..++.||.+.. .+..|.-|..+.+|.
T Consensus 376 -~h-fvt~lDfh~~~p---~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 -EH-FVTSLDFHKTAP---YVVTGSVDQTVKVWE 404 (406)
T ss_pred -cc-eeEEEecCCCCc---eEEeccccceeeeee
Confidence 11 255888887743 466676777777663
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=196.91 Aligned_cols=239 Identities=21% Similarity=0.333 Sum_probs=176.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
.|++++|+|++++|++++.|++++|||+.... .......+|...|++++|+|++ +++++|+ |++|+||++.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~------ 276 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR------ 276 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEecc------
Confidence 89999999999999999999999999994332 3445556999999999999999 6666665 5999999998
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
++ .+.. .+..|.++|.+++|++++++|++++.|+.
T Consensus 277 ---~~----------------~~~~--------------------------~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 277 ---TG----------------ECVR--------------------------KLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ---CC----------------eEEE--------------------------eeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 11 2222 35567889999999999999999999999
Q ss_pred EEEEEcCCCCc---cccccCCC--CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccC
Q 014302 260 FYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 260 v~iwd~~~~~~---~~~~~~~~--~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 332 (427)
|++||+.++.. .....+.. .+..++|+|++.+++++. .++.+..|++.... ..+.+|... .
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~~~~~~~~~~-----------~ 379 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSVGTYTGHSNL-----------V 379 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcceeeecccCCc-----------c
Confidence 99999999983 23333333 699999999999999875 45588888887642 233333321 0
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe--e
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW--S 410 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~--~ 410 (427)
..+.+...++.++++.+ ++.| +.|++|++.++..+. .+.+.. ......++++|. ..+++.+. .
T Consensus 380 ~~~~~~~~~~~~~~i~s---g~~d---~~v~~~~~~s~~~~~-----~l~~h~-~~~~~~~~~~~~---~~~~~s~s~~~ 444 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYS---GSED---GSVYVWDSSSGGILQ-----RLEGHS-KAAVSDLSSHPT---ENLIASSSFEG 444 (456)
T ss_pred eeEecccccCCCCeEEE---EeCC---ceEEEEeCCccchhh-----hhcCCC-CCceeccccCCC---cCeeeecCcCC
Confidence 14455666899999988 7777 679999999865441 122221 223456778876 34555554 5
Q ss_pred CceEEEEec
Q 014302 411 SGFCCTYPL 419 (427)
Q Consensus 411 ~g~i~~~~~ 419 (427)
|+.|.+|.-
T Consensus 445 d~~~~~w~~ 453 (456)
T KOG0266|consen 445 DGLIRLWKY 453 (456)
T ss_pred CceEEEecC
Confidence 888888864
No 37
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=3.3e-23 Score=201.59 Aligned_cols=281 Identities=18% Similarity=0.289 Sum_probs=200.3
Q ss_pred ceeeeEEcCCCCEEEEEe--CCCeEEEEEccCCC----------CcceeeccCCcCCeeEEEEccCCCceEEEecC-CeE
Q 014302 101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSG----------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGI 167 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~--~d~~v~vwd~~~~~----------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i 167 (427)
.|.+++.||+|..+|+|+ .|+.++||+.+.-. .........|.+.|+|+.|+||| .+||+|+| .-|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v 93 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLV 93 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceE
Confidence 689999999999999999 89999999976531 12233345699999999999999 89999988 667
Q ss_pred EEEeccC-CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------
Q 014302 168 CIWAPSY-PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT---------------- 230 (427)
Q Consensus 168 ~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---------------- 230 (427)
.||.... +.......++ ....-..|+.+..+++| ...|..++|+|++.+++++.
T Consensus 94 ~iW~~~~~~~~~~fgs~g--------~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTG--------GAKNVESWKVVSILRGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred EEeeecccCCcccccccc--------cccccceeeEEEEEecC-CCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 7998862 1111111111 01223468888889998 99999999999999976442
Q ss_pred -eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCCCCEEEEEEcCCc--
Q 014302 231 -PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAGSL-- 300 (427)
Q Consensus 231 -~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~~~~~~~-- 300 (427)
.++.|.+.|-.+.|.|-|+|||+-+.|++|++|++..+...... ........+.|||||++|++...-.+
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 35679999999999999999999999999999998776653322 34567889999999999997654332
Q ss_pred -eeeeeee--CCCCCCccccccccccccceeeccCCceeEEEECCC------C---------CE-EEEEEecCCCcceeE
Q 014302 301 -TLGSIHF--ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS------G---------ER-LAVSYKGGDDIYKGL 361 (427)
Q Consensus 301 -~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~------g---------~~-La~~~~~~~d~~~g~ 361 (427)
.+.+++- |+....+-| |.+++..++|+|. . .| +|++ |+.| ++
T Consensus 245 ~~~~IieR~tWk~~~~LvG--------------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av--gSqD---rS 305 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVG--------------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV--GSQD---RS 305 (942)
T ss_pred ceeEEEecCCceeeeeeec--------------CCCceEEEEeChHHhccccccCCccCCCcceEEEEE--ecCC---cc
Confidence 2333322 222223333 4447788888862 1 12 3332 8888 77
Q ss_pred EEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 362 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 362 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
|.||.....+.+.+ +. .-.....++++|.|+ |..|-+|.-||.|.++.|
T Consensus 306 lSVW~T~~~RPl~v-----i~-~lf~~SI~DmsWspd---G~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 306 LSVWNTALPRPLFV-----IH-NLFNKSIVDMSWSPD---GFSLFACSLDGTVALIHF 354 (942)
T ss_pred EEEEecCCCCchhh-----hh-hhhcCceeeeeEcCC---CCeEEEEecCCeEEEEEc
Confidence 99999866443311 11 112234778999886 888999999999999876
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=1.8e-22 Score=179.48 Aligned_cols=262 Identities=21% Similarity=0.357 Sum_probs=195.5
Q ss_pred CCceeeeEEcCCCC-EEEEEeCCCeEEEEEccCC---CCcceeecc---------CCcCCeeEEEEccCCCceEEEecC-
Q 014302 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDS---GKDACILTS---------DSQRDVKVLEWRPNGGRSLSVGCK- 164 (427)
Q Consensus 99 ~~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~---~~~~~~~~~---------~~~~~v~~l~~sp~~~~~la~g~~- 164 (427)
+++|.+.+|+|-.. .||+|+.|-+.++|++... ......+.+ .....|++++|+.+| .+||+|..
T Consensus 178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-~~LatG~~~ 256 (524)
T KOG0273|consen 178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-TLLATGSED 256 (524)
T ss_pred CCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC-CeEEEeecC
Confidence 44899999999887 9999999999999999752 111111111 134679999999999 78888865
Q ss_pred CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-------------
Q 014302 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------- 231 (427)
Q Consensus 165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------- 231 (427)
|.++||+.+ | ..+..+..| ..+|.++.|+.+|.++.++.+
T Consensus 257 G~~riw~~~----------G----------------~l~~tl~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 257 GEARIWNKD----------G----------------NLISTLGQH-KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cEEEEEecC----------c----------------hhhhhhhcc-CCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 889999986 1 234556666 999999999999998765532
Q ss_pred ----EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 232 ----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 232 ----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
+..|..+...+.|-. ...+++++.|+.|+|+.+....+ .++.+|.+.|.++.|.|.|+.|+++ ++++++++|+
T Consensus 310 ~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~-SdD~TlkiWs 387 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC-SDDGTLKIWS 387 (524)
T ss_pred EEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe-cCCCeeEeee
Confidence 222444545666764 45688888899999999987777 4566999999999999999999875 6666999888
Q ss_pred eCCCC--CCccccccccccccceeeccCCceeEEEECCCC---------CEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 307 FASKP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG---------ERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 307 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g---------~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
..+.. ..+.+|.. .|..+.|+|+| ..||++ +.| ++|++||+..+.++..
T Consensus 388 ~~~~~~~~~l~~Hsk--------------ei~t~~wsp~g~v~~n~~~~~~l~sa---s~d---stV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSK--------------EIYTIKWSPTGPVTSNPNMNLMLASA---SFD---STVKLWDVESGVPIHT 447 (524)
T ss_pred cCCCcchhhhhhhcc--------------ceeeEeecCCCCccCCCcCCceEEEe---ecC---CeEEEEEccCCceeEe
Confidence 76642 23444443 78899999875 466664 334 6799999999877622
Q ss_pred eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
+....+ .+.+++|.|+ |..||.|.-||.|++|+..
T Consensus 448 -----f~kH~~--pVysvafS~~---g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 448 -----LMKHQE--PVYSVAFSPN---GRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -----eccCCC--ceEEEEecCC---CcEEEecCCCCeeEecccc
Confidence 222233 3678999986 8889999999999999853
No 39
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=196.46 Aligned_cols=247 Identities=16% Similarity=0.291 Sum_probs=176.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccC--------------------------------C-----------------
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED--------------------------------S----------------- 131 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~--------------------------------~----------------- 131 (427)
.|.+|.||+||+|||+|+.|+.|+||.+.. .
T Consensus 269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 899999999999999999999999999866 0
Q ss_pred ---------CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeE
Q 014302 132 ---------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 202 (427)
Q Consensus 132 ---------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (427)
..++...+.+|.+.|.+|+||.++ .+|.++.|.+|+||++. .-.|
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-------------------------~~~C 402 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-------------------------RKEC 402 (712)
T ss_pred cCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCC-------------------------Ccce
Confidence 001122235799999999999888 88999999999999987 1123
Q ss_pred eehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCccccccCCCCee
Q 014302 203 VDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT 281 (427)
Q Consensus 203 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 281 (427)
+..+ .|..-|+|++|+| |.+|+++|+-|+.||||++...+...|.....-|+
T Consensus 403 L~~F---------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT 455 (712)
T KOG0283|consen 403 LKVF---------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT 455 (712)
T ss_pred eeEE---------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe
Confidence 3322 2666788888888 66789999999999999999888888877779999
Q ss_pred EEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCccee
Q 014302 282 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKG 360 (427)
Q Consensus 282 ~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g 360 (427)
++||+|||++.++|+-++ .++.++..+.+.....|.. +.......++ .|+.+.|.|... .|+|+ ++| .
T Consensus 456 Avcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~---~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT---SnD---S 524 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIR---LHNKKKKQGK-RITGLQFFPGDPDEVLVT---SND---S 524 (712)
T ss_pred eEEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEe---eccCccccCc-eeeeeEecCCCCCeEEEe---cCC---C
Confidence 999999999999887655 5566655554322222211 1112222233 899999986443 35553 334 4
Q ss_pred EEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 361 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 361 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
.|+|||.+...++. ...|+.++ ...+.-+|..+ |.-+..+..|..|++|.+
T Consensus 525 rIRI~d~~~~~lv~-KfKG~~n~----~SQ~~Asfs~D---gk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 525 RIRIYDGRDKDLVH-KFKGFRNT----SSQISASFSSD---GKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ceEEEeccchhhhh-hhcccccC----CcceeeeEccC---CCEEEEeecCceEEEEeC
Confidence 49999997766542 22333332 22345567663 665666669999999986
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=164.82 Aligned_cols=236 Identities=12% Similarity=0.153 Sum_probs=181.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
+|+++.|+-||++.++++.|.+|++|+...+ .....+.+|...|.+++.+.|..++.++|+|..+.+||++
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~------- 89 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN------- 89 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-------
Confidence 8999999999999999999999999998777 6777888899999999999999778888889999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
+| +..+ .+++|.+.|..++|+.+...+++|+.|.++
T Consensus 90 --TG----------------kv~R--------------------------r~rgH~aqVNtV~fNeesSVv~SgsfD~s~ 125 (307)
T KOG0316|consen 90 --TG----------------KVDR--------------------------RFRGHLAQVNTVRFNEESSVVASGSFDSSV 125 (307)
T ss_pred --cC----------------eeee--------------------------ecccccceeeEEEecCcceEEEecccccee
Confidence 33 2222 355678889999999999999999999999
Q ss_pred EEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302 261 YLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 261 ~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
++||-++....+.. .....|.++..+. ..+ .+++-+++++.+++....... -..+.+|++
T Consensus 126 r~wDCRS~s~ePiQildea~D~V~Si~v~~--heI-vaGS~DGtvRtydiR~G~l~s--------------Dy~g~pit~ 188 (307)
T KOG0316|consen 126 RLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEI-VAGSVDGTVRTYDIRKGTLSS--------------DYFGHPITS 188 (307)
T ss_pred EEEEcccCCCCccchhhhhcCceeEEEecc--cEE-EeeccCCcEEEEEeecceeeh--------------hhcCCccee
Confidence 99999987764433 6677888888863 344 456777788888887753211 112338899
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
++|++||+.+.++ +-+ ++|++.|-.+++++. ...|...-+..+.+.+.. ....+.-|..||.+.||
T Consensus 189 vs~s~d~nc~La~---~l~---stlrLlDk~tGklL~-----sYkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 189 VSFSKDGNCSLAS---SLD---STLRLLDKETGKLLK-----SYKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFW 254 (307)
T ss_pred EEecCCCCEEEEe---ecc---ceeeecccchhHHHH-----Hhcccccceeeeeeeecc---cceeEEeccCCceEEEE
Confidence 9999999998884 444 569999999998762 222332222234444533 35578889999999999
Q ss_pred ecc
Q 014302 418 PLI 420 (427)
Q Consensus 418 ~~~ 420 (427)
+|-
T Consensus 255 dLv 257 (307)
T KOG0316|consen 255 DLV 257 (307)
T ss_pred Eec
Confidence 974
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=2.6e-22 Score=173.22 Aligned_cols=252 Identities=16% Similarity=0.229 Sum_probs=188.4
Q ss_pred CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEec
Q 014302 96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAP 172 (427)
Q Consensus 96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~ 172 (427)
.+..| +|.+++.+|+.+++|||+.|....||+..++ +......+|...|+++.||.+| .+||+|.- +.|+||..
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKV 135 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEc
Confidence 34455 8999999999999999999999999999988 5667778999999999999999 88998865 89999999
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF 252 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~ 252 (427)
. ++ .... .+......+..+.|+|.+..|+
T Consensus 136 s---------tg----------------~~~~--------------------------~~~~e~~dieWl~WHp~a~ill 164 (399)
T KOG0296|consen 136 S---------TG----------------GEQW--------------------------KLDQEVEDIEWLKWHPRAHILL 164 (399)
T ss_pred c---------cC----------------ceEE--------------------------EeecccCceEEEEecccccEEE
Confidence 7 22 0000 0111234677899999999999
Q ss_pred EEecCCcEEEEEcCCC-CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302 253 AAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 331 (427)
Q Consensus 253 ~~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (427)
+|+.||.+.+|.+.+. .+..+.+|..++++=.|.|||+.++++.. +++|.+|+.....+...-. . ..
T Consensus 165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~----------~-~e 232 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKIT----------Q-AE 232 (399)
T ss_pred eecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecCCCceeEEec----------c-cc
Confidence 9999999999999984 44666799999999999999999998754 5588888877763311100 0 01
Q ss_pred CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee-eeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302 332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 410 (427)
Q Consensus 332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~ 410 (427)
+.....+.++..+..+.. ++.+ +.+++-...+++++.... .+..-.+......-|+.|.|.+..-.|.|+|.-
T Consensus 233 ~~~~~~~~~~~~~~~~~~---g~~e---~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTK---GNSE---GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred cCcCCccccccccceeEe---ccCC---ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 224567778888877766 5554 447777777777664432 111112333334558889998888889999999
Q ss_pred CceEEEEec
Q 014302 411 SGFCCTYPL 419 (427)
Q Consensus 411 ~g~i~~~~~ 419 (427)
||+|.+|++
T Consensus 307 dG~i~iyD~ 315 (399)
T KOG0296|consen 307 DGTIAIYDL 315 (399)
T ss_pred cceEEEEec
Confidence 999999995
No 42
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.7e-22 Score=168.24 Aligned_cols=251 Identities=17% Similarity=0.239 Sum_probs=177.3
Q ss_pred CceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 100 ~~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
-.|.+|+||| ...+|+.++.|++||+|+++..+.........|.++|.+++|+.||..+++.++|+.+++||+.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~----- 102 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA----- 102 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-----
Confidence 3789999999 4557778999999999999986334445556799999999999999888888899999999997
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC--EEEEEec
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD--YFFAAKF 256 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~ 256 (427)
++ ++. .+..|.++|..+.|-+... .|++|+.
T Consensus 103 ----S~----------------------------Q~~---------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSW 135 (347)
T KOG0647|consen 103 ----SG----------------------------QVS---------------QVAAHDAPVKTCHWVPGMNYQCLVTGSW 135 (347)
T ss_pred ----CC----------------------------Cee---------------eeeecccceeEEEEecCCCcceeEeccc
Confidence 11 111 2345788899999876655 7889999
Q ss_pred CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302 257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 336 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 336 (427)
|++|+.||++.............+.++..- ...++++..+. .|.++++.+....++.+..|+.. .++
T Consensus 136 DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r-~i~vynL~n~~te~k~~~SpLk~----------Q~R 202 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAER-HIAVYNLENPPTEFKRIESPLKW----------QTR 202 (347)
T ss_pred ccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCC-cEEEEEcCCCcchhhhhcCcccc----------eee
Confidence 999999999987775555555555555432 23455554444 78888888776555555544321 568
Q ss_pred EEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCC---CCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGP---GDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
+++.-+|.+..|. |+-+ |.+.|..+..+ +....+..+..+.. .+.-.+..|+|||. .|.+.++| +||
T Consensus 203 ~va~f~d~~~~al---GsiE---Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~--hgtlvTaG-sDG 273 (347)
T KOG0647|consen 203 CVACFQDKDGFAL---GSIE---GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV--HGTLVTAG-SDG 273 (347)
T ss_pred EEEEEecCCceEe---eeec---ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc--cceEEEec-CCc
Confidence 8888777776676 5555 67999888763 33333444444321 11123557999995 57777777 999
Q ss_pred eEEEEeccccCC
Q 014302 413 FCCTYPLIFRSH 424 (427)
Q Consensus 413 ~i~~~~~~~~~~ 424 (427)
++.||+-=-+.+
T Consensus 274 tf~FWDkdar~k 285 (347)
T KOG0647|consen 274 TFSFWDKDARTK 285 (347)
T ss_pred eEEEecchhhhh
Confidence 999998544333
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.9e-22 Score=185.06 Aligned_cols=233 Identities=14% Similarity=0.204 Sum_probs=187.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
+|++..|-+..+|+++|+.|..|+||++++. +.......|.+-|++++.+|..+.+|.++.|-.|++|+.+
T Consensus 57 PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we------- 127 (794)
T KOG0276|consen 57 PVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE------- 127 (794)
T ss_pred chhhheeeeccceEEEecCCceEEEEecccc--eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc-------
Confidence 7889999999999999999999999999998 6667778899999999999999888888888999999997
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEEecCCc
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT 259 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~ 259 (427)
..|.+.+.+.+| ..-|.+++|.| |.+.+++++-|++
T Consensus 128 -----------------~~wa~~qtfeGH--------------------------~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 128 -----------------NEWACEQTFEGH--------------------------EHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred -----------------CceeeeeEEcCc--------------------------ceEEEEEEecCCCccceeeeecccc
Confidence 256666666655 44566666766 5568889999999
Q ss_pred EEEEEcCCCCc-cccccCCCCeeEEEECCCC--CEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCc
Q 014302 260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 260 v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg--~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
|+||.+.+..+ .++.+|...|.++++-+-| .+|++| .++.++++|++.++. .+++||.. .
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-aDD~tiKvWDyQtk~CV~TLeGHt~--------------N 229 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-ADDLTIKVWDYQTKSCVQTLEGHTN--------------N 229 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-CCCceEEEeecchHHHHHHhhcccc--------------c
Confidence 99999988777 4555999999999998755 588765 566689999988874 37788877 7
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 414 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i 414 (427)
|+.+.|+|.-..+++ |++| |+|+||+..+-++...... .-++..||+-++. ...+++|+..|.|
T Consensus 230 vs~v~fhp~lpiiis---gsED---GTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~---~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 230 VSFVFFHPELPIIIS---GSED---GTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKG---DGKIAVGFDEGSV 293 (794)
T ss_pred ceEEEecCCCcEEEE---ecCC---ccEEEecCcceehhhhhhc-------CCceEEEEeecCC---CCeEEEeccCCcE
Confidence 899999999999988 8888 8899999987665422221 2234678887775 4458999888876
Q ss_pred EE
Q 014302 415 CT 416 (427)
Q Consensus 415 ~~ 416 (427)
.+
T Consensus 294 ~v 295 (794)
T KOG0276|consen 294 TV 295 (794)
T ss_pred EE
Confidence 54
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.9e-22 Score=190.44 Aligned_cols=255 Identities=14% Similarity=0.190 Sum_probs=195.8
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
.|..++|||...+++++--+|.|++||+.-+ ........|.++|+.+.|+|+++ ++++|+ |-.|++|+..
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk------ 81 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYK------ 81 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecc------
Confidence 6889999999999999999999999999876 45555667999999999999995 555555 4789999997
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------ceEEeccCCeEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------TPIRRGFGGLSIL 242 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~~~~~~v~~~ 242 (427)
.-+++-.+.+| ...|..+.|++.--|+.+. ..+++|.--|.|.
T Consensus 82 -------------------~rrclftL~GH-lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA 141 (1202)
T KOG0292|consen 82 -------------------TRRCLFTLLGH-LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA 141 (1202)
T ss_pred -------------------cceehhhhccc-cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence 33667777777 8888888888877664432 2356788889999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCc-----c-------------------------ccccCCCCeeEEEECCCCCEE
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTS-----E-------------------------PWSSTSGFVTGATWDPEGRMI 292 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~-------------------------~~~~~~~~v~~v~~spdg~~l 292 (427)
+|+|....++++|-|.+|||||+...+. . .+.+|...|.-++|+|.-..+
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 9999999999999999999999853221 0 112788899999999988888
Q ss_pred EEEEcCCceeeeeeeCCCC----CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 293 LLAFAGSLTLGSIHFASKP----PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 293 ~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
++| +++..+++|++...+ .+..+|.. .|+++-|+|....+++ .++| ++|+|||+.
T Consensus 222 VSG-~DDRqVKlWrmnetKaWEvDtcrgH~n--------------nVssvlfhp~q~lIlS---nsED---ksirVwDm~ 280 (1202)
T KOG0292|consen 222 VSG-ADDRQVKLWRMNETKAWEVDTCRGHYN--------------NVSSVLFHPHQDLILS---NSED---KSIRVWDMT 280 (1202)
T ss_pred Eec-CCcceeeEEEeccccceeehhhhcccC--------------CcceEEecCccceeEe---cCCC---ccEEEEecc
Confidence 765 566588888877642 23445555 7899999999988888 7888 779999998
Q ss_pred cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEE
Q 014302 369 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 415 (427)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~ 415 (427)
....+.. | + .+..+..+++-||. ..+.|.|-.+|.+.
T Consensus 281 kRt~v~t----f-r--rendRFW~laahP~---lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 281 KRTSVQT----F-R--RENDRFWILAAHPE---LNLFAAGHDSGMIV 317 (1202)
T ss_pred cccceee----e-e--ccCCeEEEEEecCC---cceeeeecCCceEE
Confidence 7765522 1 1 13334667888886 55777776666544
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-22 Score=175.61 Aligned_cols=223 Identities=17% Similarity=0.273 Sum_probs=182.9
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~ 174 (427)
|++| .|..++|+..|++||+++.|-.+++||++.. ........+|...|.++.|-|.|..++.++.|.+|+.|+++
T Consensus 146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~- 223 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD- 223 (406)
T ss_pred hhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc-
Confidence 3444 8999999999999999999999999999875 23555667899999999999999777777788999999998
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccC
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFG 237 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~ 237 (427)
++ +++..+..| ..-|..+..+.||.+++++. .++.|.-
T Consensus 224 --------tg----------------~cv~t~~~h-~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh 278 (406)
T KOG0295|consen 224 --------TG----------------YCVKTFPGH-SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH 278 (406)
T ss_pred --------cc----------------eeEEeccCc-hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc
Confidence 33 777878887 66888889999998866442 3667888
Q ss_pred CeEEEEEccC---------------CCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302 238 GLSILKWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT 301 (427)
Q Consensus 238 ~v~~~~~sp~---------------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~ 301 (427)
.|.+++|.|. ++++++++.|++|++||+.++.+ ..+.+|..+|..++|+|.|+||+++ .++++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDkt 357 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKT 357 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCc
Confidence 9999998762 25788999999999999999998 4556999999999999999999976 56669
Q ss_pred eeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 302 LGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 302 i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
+++|++...+. .+..|.. -+++++|+.+..++++ |+-| .++++|.-
T Consensus 358 lrvwdl~~~~cmk~~~ah~h--------------fvt~lDfh~~~p~VvT---GsVd---qt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEH--------------FVTSLDFHKTAPYVVT---GSVD---QTVKVWEC 405 (406)
T ss_pred EEEEEeccceeeeccCCCcc--------------eeEEEecCCCCceEEe---cccc---ceeeeeec
Confidence 99999988644 3333333 6799999998888877 8877 56999964
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=4.3e-22 Score=186.10 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=185.2
Q ss_pred CCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEec-CCeE
Q 014302 93 HVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGI 167 (427)
Q Consensus 93 ~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i 167 (427)
...++.+| .|.+++...+|.+||+|+.|.++++|.++.+. ........+|...|.+++++..+..+|++++ |.++
T Consensus 357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 44567788 78888866778999999999999999995552 2233445679999999999988877777765 5999
Q ss_pred EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce----------------
Q 014302 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP---------------- 231 (427)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---------------- 231 (427)
++|++....+.... ....+......| ...|++++.+|+.+++++++.
T Consensus 437 K~W~l~~s~~~~~~----------------~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 437 KLWDLPKSKETAFP----------------IVLTCRYTERAH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred EEecCCCccccccc----------------ceehhhHHHHhh-cccccceEecCCCceEEecccccceeeecccCceEEE
Confidence 99999731111100 000111122333 778999999999999887743
Q ss_pred -EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 232 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 232 -~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
+++|..+++++.|+|..+.++++|.|++|+||.+.+..+. ++.+|...|..+.|-.+|+.|++++.++ .+++|++..
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG-liKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG-LIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC-cEEEEeccc
Confidence 6779999999999999999999999999999999999995 5558999999999999999999876555 888888877
Q ss_pred CC--CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 310 KP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 310 ~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
.. .+++.|.. .|++++-+|.+.++++ |+.| |.|.+|.=
T Consensus 579 ~eC~~tlD~H~D--------------rvWaL~~~~~~~~~~t---gg~D---g~i~~wkD 618 (775)
T KOG0319|consen 579 NECEMTLDAHND--------------RVWALSVSPLLDMFVT---GGGD---GRIIFWKD 618 (775)
T ss_pred hhhhhhhhhccc--------------eeEEEeecCccceeEe---cCCC---eEEEEeec
Confidence 53 36666665 8899999999998877 7777 78999964
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=5e-21 Score=166.07 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=192.4
Q ss_pred CCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc---eEEEecCCeEEEEec
Q 014302 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR---SLSVGCKGGICIWAP 172 (427)
Q Consensus 96 ~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~---~la~g~~~~i~iw~~ 172 (427)
++.+--|.++... +.+|++|+.||.++|||.... ......+|.++|.+++|.-.... ++.++.|.++++|.+
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 4444467777766 789999999999999998765 66777899999999999743323 566666799999998
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------------
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG----------------------- 229 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----------------------- 229 (427)
+.+.+. ..+....++| ...|.+++..++|....++
T Consensus 177 ~~~~~~---------------------~~~~~~~~GH-k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 177 NVGENK---------------------VKALKVCRGH-KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred cCchhh---------------------hhHHhHhccc-ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 733221 1122223344 7777777777776652211
Q ss_pred -------------------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCC
Q 014302 230 -------------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGR 290 (427)
Q Consensus 230 -------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~ 290 (427)
..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+++............++..+|...
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc
Confidence 11456899999999998 6678899999999999999999877777788899999999999
Q ss_pred EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 291 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 291 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
.|++++++. .+.+|+.+.. .+. +.......|.+.|.++.|+|...++.++ ++.| +++++||+++.
T Consensus 314 Ll~~gssdr----~irl~DPR~~-~gs-----~v~~s~~gH~nwVssvkwsp~~~~~~~S--~S~D---~t~klWDvRS~ 378 (423)
T KOG0313|consen 314 LLASGSSDR----HIRLWDPRTG-DGS-----VVSQSLIGHKNWVSSVKWSPTNEFQLVS--GSYD---NTVKLWDVRST 378 (423)
T ss_pred eeeecCCCC----ceeecCCCCC-CCc-----eeEEeeecchhhhhheecCCCCceEEEE--EecC---CeEEEEEeccC
Confidence 998877555 5555554221 111 1113334566699999999999988776 7877 78999999875
Q ss_pred c--eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 371 P--LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 371 ~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
. ++ .+.+. ..+.+++.|. .+.++..|..|.+|++|.
T Consensus 379 k~ply------dI~~h--~DKvl~vdW~----~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 379 KAPLY------DIAGH--NDKVLSVDWN----EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCcce------eeccC--CceEEEEecc----CCceEEeccCcceEEEec
Confidence 4 33 23333 3346677775 355677777899998875
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.9e-21 Score=181.86 Aligned_cols=261 Identities=13% Similarity=0.177 Sum_probs=190.5
Q ss_pred ceeeeEE-cCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302 101 DLQGVSW-HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~-sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~ 178 (427)
.|..|.| .|+.++||+++..+.+|+|++.+. ...+..+|...|.++....+| .+|++++ |+++++|.++..-
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~-- 398 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC-- 398 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc--
Confidence 7888887 678889999999999999988777 444788999999999955566 6777775 4999999985111
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cc--------------------------cCce
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PG--------------------------LGTP 231 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~--------------------------~~~~ 231 (427)
....++....+| ...|.+++.+..+.- +. +...
T Consensus 399 -------------------~~~~~~a~~~gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 399 -------------------SKSLCVAQANGH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred -------------------chhhhhhhhccc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 111223333344 555555555433221 10 0111
Q ss_pred EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
.+.|...|.+++++|+.+.+|+|+.|++.+||++..... ..+.+|...|.+|.|+|..+.++++ +.|.++++|.+.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC-SGDKTVKIWSISTF 537 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec-cCCceEEEEEeccc
Confidence 344889999999999999999999999999999995555 3455999999999999999999875 56669999999886
Q ss_pred --CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC
Q 014302 311 --PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 388 (427)
Q Consensus 311 --~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 388 (427)
..+++||.. .|..+.|-.+|+.|++ ++.| |.|+||+++++.|.. .+.+..+
T Consensus 538 SClkT~eGH~~--------------aVlra~F~~~~~qliS---~~ad---GliKlWnikt~eC~~-----tlD~H~D-- 590 (775)
T KOG0319|consen 538 SCLKTFEGHTS--------------AVLRASFIRNGKQLIS---AGAD---GLIKLWNIKTNECEM-----TLDAHND-- 590 (775)
T ss_pred eeeeeecCccc--------------eeEeeeeeeCCcEEEe---ccCC---CcEEEEeccchhhhh-----hhhhccc--
Confidence 347777776 7899999999999999 5556 779999999998862 1222222
Q ss_pred CceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+...++-.+. +.....|-.||+|.+|-
T Consensus 591 rvWaL~~~~~---~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 591 RVWALSVSPL---LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEEEeecCc---cceeEecCCCeEEEEee
Confidence 2333333333 33566677999999984
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.6e-21 Score=165.01 Aligned_cols=269 Identities=16% Similarity=0.221 Sum_probs=192.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC---------------CC-cceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------------GK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~---------------~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~ 164 (427)
.+++.+|+|||.++|+|+.|..|+|.|++.. .. ........|...|+++.|+|.. .+|++|++
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~sr 192 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSR 192 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-heEEeccC
Confidence 7899999999999999999999999998731 01 2234456799999999999998 77777765
Q ss_pred -CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------
Q 014302 165 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------- 230 (427)
Q Consensus 165 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------- 230 (427)
++|+++|+.++... +....+. ...+|.+++|+|.|.++..|+
T Consensus 193 D~tvKlFDfsK~saK----------------------rA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAK----------------------RAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred CCeEEEEecccHHHH----------------------HHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 99999999722110 1111222 367889999999999865442
Q ss_pred -------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 231 -------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 231 -------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
+-..|.+.|+++.+|+.|+..++++.||.|+|||--+.+|.... .....|.+..|..+|+++++.+ .+.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS 327 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDS 327 (430)
T ss_pred eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-Ccc
Confidence 23347899999999999999999999999999999998885544 3456799999999999999764 445
Q ss_pred eeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302 301 TLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 378 (427)
Q Consensus 301 ~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~ 378 (427)
.++.|.+...+. .+.|....- . ...-+...|+....|++.--..+ +.+.-||.++...+.+.+.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tg------r---q~~rtqAvFNhtEdyVl~pDEas-----~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTG------R---QKHRTQAVFNHTEDYVLFPDEAS-----NSLCSWDARTADRVALLSL 393 (430)
T ss_pred eeeeeeecCCceEEEEecCCccc------c---hhhhhhhhhcCccceEEcccccc-----Cceeeccccchhhhhhccc
Confidence 888888876532 111110000 0 00124456777788887642222 4599999999877766655
Q ss_pred eeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
|. ...+-+|...|. +.-...|..|-++.||-
T Consensus 394 gH------n~a~R~i~HSP~---~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 394 GH------NGAVRWIVHSPV---EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CC------CCCceEEEeCCC---CCceeeecccceeeeee
Confidence 43 122447777775 55677787888888773
No 50
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=2.2e-20 Score=179.90 Aligned_cols=229 Identities=14% Similarity=0.179 Sum_probs=151.0
Q ss_pred CCCC--ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCCC------cceeeccCCcCCeeEEEEccCCCceEEEe-cCCe
Q 014302 97 LPEV--DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGK------DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG 166 (427)
Q Consensus 97 l~~~--~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~ 166 (427)
+.+| .|.+++|+|+ +.+||+|+.|++|+|||+..... .......+|...|.+++|+|++..+|+++ .|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3445 8999999997 78999999999999999975421 12234467999999999999986677665 5699
Q ss_pred EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP 246 (427)
Q Consensus 167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp 246 (427)
|+|||+. .+ .... .+. +...|.+++|+|
T Consensus 150 IrIWDl~---------tg----------------~~~~--------------------------~i~-~~~~V~Slswsp 177 (568)
T PTZ00420 150 VNIWDIE---------NE----------------KRAF--------------------------QIN-MPKKLSSLKWNI 177 (568)
T ss_pred EEEEECC---------CC----------------cEEE--------------------------EEe-cCCcEEEEEECC
Confidence 9999997 11 0000 011 234688999999
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeE-----EEECCCCCEEEEEEcCCc---eeeeeeeCCCCCCcccc
Q 014302 247 TGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTG-----ATWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAH 317 (427)
Q Consensus 247 ~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~-----v~~spdg~~l~~~~~~~~---~i~~~~~~~~~~~~~~~ 317 (427)
+|.+|++++.|+.|+|||+++++.. .+..|.+.+.. ..|++++.+|++++.++. .+.+|++......+.
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-- 255 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV-- 255 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE--
Confidence 9999999999999999999988763 34467665433 335689999998776653 577777664311110
Q ss_pred ccccccccceeeccCCceeEEEEC-CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302 318 LLPVDLPDIVSLTGSQGIEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 396 (427)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 396 (427)
...+.....+....|+ ++|.++++ |+.| ++|++|++..+.+..+.. + . .... ...++|.
T Consensus 256 --------~~~ld~~~~~L~p~~D~~tg~l~ls---GkGD---~tIr~~e~~~~~~~~l~~--~-~-s~~p--~~g~~f~ 315 (568)
T PTZ00420 256 --------TMSIDNASAPLIPHYDESTGLIYLI---GKGD---GNCRYYQHSLGSIRKVNE--Y-K-SCSP--FRSFGFL 315 (568)
T ss_pred --------EEEecCCccceEEeeeCCCCCEEEE---EECC---CeEEEEEccCCcEEeecc--c-c-cCCC--ccceEEc
Confidence 0011111122222344 55777776 6666 679999998765443321 1 1 1111 2357788
Q ss_pred cCC
Q 014302 397 DKF 399 (427)
Q Consensus 397 ~~~ 399 (427)
|+.
T Consensus 316 Pkr 318 (568)
T PTZ00420 316 PKQ 318 (568)
T ss_pred ccc
Confidence 874
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.1e-21 Score=177.17 Aligned_cols=233 Identities=16% Similarity=0.245 Sum_probs=183.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|.++.|||...+++++-.+|.|.||++++. .......-...+|++..|-+.. +.+++|+| ..|+|++.+
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnyn------ 85 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYN------ 85 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecc------
Confidence 6899999999999999999999999999987 4444444466789999999877 55555555 889999997
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
++ ..+. .+..|..-|++++.+|...+++++++|-+
T Consensus 86 ---t~----------------ekV~--------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~ 120 (794)
T KOG0276|consen 86 ---TG----------------EKVK--------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMT 120 (794)
T ss_pred ---cc----------------eeeE--------------------------EeeccccceeeeeecCCCCeEEecCCccE
Confidence 21 1222 34557788999999999999999999999
Q ss_pred EEEEEcCCC-Cc-cccccCCCCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCc
Q 014302 260 FYLWETNTW-TS-EPWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 260 v~iwd~~~~-~~-~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
|++||.+.. .+ +.+.+|...|++++|.|.. +.+++ ++-+.++++|.+.+..+ ++++|.. .
T Consensus 121 iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS-~sLDrTVKVWslgs~~~nfTl~gHek--------------G 185 (794)
T KOG0276|consen 121 IKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS-ASLDRTVKVWSLGSPHPNFTLEGHEK--------------G 185 (794)
T ss_pred EEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee-eeccccEEEEEcCCCCCceeeecccc--------------C
Confidence 999998754 34 5666999999999999955 45555 45666999999988644 5667766 8
Q ss_pred eeEEEECC--CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 335 IEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 335 i~~v~~sp--~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
|+++++=+ |..+|++ |++| .+|+|||.++..|++ .+.|.... ..++.|||.+ .+++.|..||
T Consensus 186 VN~Vdyy~~gdkpylIs---gaDD---~tiKvWDyQtk~CV~-----TLeGHt~N--vs~v~fhp~l---piiisgsEDG 249 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLIS---GADD---LTIKVWDYQTKSCVQ-----TLEGHTNN--VSFVFFHPEL---PIIISGSEDG 249 (794)
T ss_pred cceEEeccCCCcceEEe---cCCC---ceEEEeecchHHHHH-----Hhhccccc--ceEEEecCCC---cEEEEecCCc
Confidence 89999975 4468988 8888 679999999998873 33343333 5578899974 5899999999
Q ss_pred eEEEEe
Q 014302 413 FCCTYP 418 (427)
Q Consensus 413 ~i~~~~ 418 (427)
++.+|.
T Consensus 250 TvriWh 255 (794)
T KOG0276|consen 250 TVRIWN 255 (794)
T ss_pred cEEEec
Confidence 999996
No 52
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=3.1e-20 Score=178.89 Aligned_cols=239 Identities=13% Similarity=0.176 Sum_probs=155.0
Q ss_pred EeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCC
Q 014302 117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRG 195 (427)
Q Consensus 117 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (427)
|+.++.++||+.... .......+|...|.+++|+|+...+|++|+ |+.|+||++...+.
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~------------------ 109 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE------------------ 109 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc------------------
Confidence 456788999987665 455566789999999999998446766665 59999999961100
Q ss_pred CCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEE-EEEecCCcEEEEEcCCCCccccc
Q 014302 196 PGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWS 274 (427)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~ 274 (427)
....+. . ....+..|...|.+++|+|++..+ ++++.|++|+|||+++++.....
T Consensus 110 ------~~~~i~----~---------------p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 110 ------SVKEIK----D---------------PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred ------cccccc----c---------------ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 000000 0 001244577889999999999875 58899999999999988764333
Q ss_pred cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302 275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK 352 (427)
Q Consensus 275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~ 352 (427)
.+...|.+++|+|+|+.|++++ .++.+++|++..... .+.+|.... ....+....|++++.+|+++
T Consensus 165 ~~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~tl~gH~g~~---------~s~~v~~~~fs~d~~~IlTt-- 232 (568)
T PTZ00420 165 NMPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGK---------NTKNIWIDGLGGDDNYILST-- 232 (568)
T ss_pred ecCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEEEEecccCCc---------eeEEEEeeeEcCCCCEEEEE--
Confidence 4667899999999999998765 455888888776422 222222110 00023334567999999885
Q ss_pred cCCCcceeEEEEEEecc-CceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 353 GGDDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 353 ~~~d~~~g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
|.++...++|+|||++. ...+.. +.. ......+...|.+ ..|.++.+|..|+.|.+|++.
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~-----~~l-d~~~~~L~p~~D~--~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVT-----MSI-DNASAPLIPHYDE--STGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEE-----EEe-cCCccceEEeeeC--CCCCEEEEEECCCeEEEEEcc
Confidence 33221124699999985 332211 111 1111122222322 258889999999999999974
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.7e-20 Score=155.58 Aligned_cols=245 Identities=13% Similarity=0.169 Sum_probs=177.8
Q ss_pred CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccCC
Q 014302 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYP 175 (427)
Q Consensus 98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~ 175 (427)
..+.|+++.|+++|.+|++++.|.+++|||...+ ........+.-+|..+.|......++.+.. +.+|+..++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-- 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-- 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee--
Confidence 3458999999999999999999999999999887 455555556667888888877656776665 5788888776
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 255 (427)
.-+.++ .+.+|...|.+++.+|-+..+++++
T Consensus 89 -----------------------dNkylR--------------------------YF~GH~~~V~sL~~sP~~d~FlS~S 119 (311)
T KOG1446|consen 89 -----------------------DNKYLR--------------------------YFPGHKKRVNSLSVSPKDDTFLSSS 119 (311)
T ss_pred -----------------------cCceEE--------------------------EcCCCCceEEEEEecCCCCeEEecc
Confidence 113333 3445677899999999999999999
Q ss_pred cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCccccccccccccceeeccCCc
Q 014302 256 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
.|++|++||++..++.-... ...-..++|.|+|-++|.+...+ .|+++++..- ...+..-.... .....
T Consensus 120 ~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~--------~~~~e 189 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITD--------NDEAE 189 (311)
T ss_pred cCCeEEeeEecCCCCceEEe-cCCCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCC--------CCccc
Confidence 99999999999888865542 22334678999999998876665 7777777653 11111100000 11226
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCce
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 413 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~ 413 (427)
.+.|.|||||++|+.+..+ +.+++.|.-+|.+. ..+.. +....-++...|.|+ ++.+..|..||+
T Consensus 190 w~~l~FS~dGK~iLlsT~~------s~~~~lDAf~G~~~-----~tfs~~~~~~~~~~~a~ftPd---s~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLSTNA------SFIYLLDAFDGTVK-----STFSGYPNAGNLPLSATFTPD---SKFVLSGSDDGT 255 (311)
T ss_pred eeeeEEcCCCCEEEEEeCC------CcEEEEEccCCcEe-----eeEeeccCCCCcceeEEECCC---CcEEEEecCCCc
Confidence 7999999999999995433 44999999888743 12222 223333567889997 677999999999
Q ss_pred EEEEec
Q 014302 414 CCTYPL 419 (427)
Q Consensus 414 i~~~~~ 419 (427)
|++|.+
T Consensus 256 i~vw~~ 261 (311)
T KOG1446|consen 256 IHVWNL 261 (311)
T ss_pred EEEEEc
Confidence 999987
No 54
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.9e-21 Score=176.40 Aligned_cols=241 Identities=15% Similarity=0.240 Sum_probs=177.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|+++.|+++|.+||+|..+|.|.|||.... ........ |...|.+++|+ + .++.+|.. +.|..+|+...
T Consensus 219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~--~-~~lssGsr~~~I~~~dvR~~--- 290 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN--S-SVLSSGSRDGKILNHDVRIS--- 290 (484)
T ss_pred ceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc--C-ceEEEecCCCcEEEEEEecc---
Confidence 7999999999999999999999999998876 33333344 99999999999 3 57777765 88999999710
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
.+ ....+..|...|..++|++|+++||+|+.|+
T Consensus 291 -----------------------------~~------------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN 323 (484)
T KOG0305|consen 291 -----------------------------QH------------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDN 323 (484)
T ss_pred -----------------------------hh------------------hhhhhhcccceeeeeEECCCCCeeccCCCcc
Confidence 00 0002455788899999999999999999999
Q ss_pred cEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302 259 TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 259 ~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
.+.|||...... ..+..|.+.|.+++|+|-.+-|++. +++...+.|++|+... +. ......-+..|.+
T Consensus 324 ~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs-GGGs~D~~i~fwn~~~---g~-------~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 324 VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT-GGGSADRCIKFWNTNT---GA-------RIDSVDTGSQVCS 392 (484)
T ss_pred ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE-cCCCcccEEEEEEcCC---Cc-------EecccccCCceee
Confidence 999999966555 4556999999999999966555433 3333556666666421 00 1122233458999
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
|.|++..+-|+++..-+ + ..|.||+..+...+ ..+.+. ...++.++..|+ |..+++|.+|.++.||
T Consensus 393 L~Wsk~~kEi~sthG~s-~---n~i~lw~~ps~~~~-----~~l~gH--~~RVl~la~SPd---g~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGYS-E---NQITLWKYPSMKLV-----AELLGH--TSRVLYLALSPD---GETIVTGAADETLRFW 458 (484)
T ss_pred EEEcCCCCEEEEecCCC-C---CcEEEEecccccee-----eeecCC--cceeEEEEECCC---CCEEEEecccCcEEec
Confidence 99999998888865333 3 35999999885543 222232 234778888886 8889999999999999
Q ss_pred eccc
Q 014302 418 PLIF 421 (427)
Q Consensus 418 ~~~~ 421 (427)
.++=
T Consensus 459 ~~f~ 462 (484)
T KOG0305|consen 459 NLFD 462 (484)
T ss_pred cccC
Confidence 9653
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.6e-21 Score=169.71 Aligned_cols=234 Identities=16% Similarity=0.168 Sum_probs=178.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|.++.|..||++||.|...|.|+|+|+.+. .......+|+.+|..+.|+|++..++++|+| +.+++||++
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s------ 141 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS------ 141 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC------
Confidence 6899999999999999999999999995543 4566678899999999999999899999988 667799997
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEEEecCC
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFAAKFDG 258 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg 258 (427)
+. .... .+..|...|.+.+|+|-.. .+++|+.||
T Consensus 142 ---~a----------------~v~~--------------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 142 ---TA----------------YVQA--------------------------ELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred ---Cc----------------EEEE--------------------------EecCCcceeEeeccccCCCeEEEecCCCc
Confidence 11 1111 2445778899999999776 555999999
Q ss_pred cEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302 259 TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 259 ~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
.|++||+++... .....|..+|.++.+-|.|+.+++++ ++.+++|++-.....+ .....|...|++
T Consensus 177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll-----------~~~~~H~KtVTc 243 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLL-----------TSMFNHNKTVTC 243 (487)
T ss_pred eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceeh-----------hhhhcccceEEE
Confidence 999999998854 33348999999999999999998754 3368888887532111 001113348999
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
+++..++..|++ ++-| +.|++||+.+.+++. +-.-....++++..|+ ++.+.+|.++|.+..=
T Consensus 244 L~l~s~~~rLlS---~sLD---~~VKVfd~t~~Kvv~--------s~~~~~pvLsiavs~d---d~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 244 LRLASDSTRLLS---GSLD---RHVKVFDTTNYKVVH--------SWKYPGPVLSIAVSPD---DQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEeecCCceEee---cccc---cceEEEEccceEEEE--------eeecccceeeEEecCC---CceEEEecccceeeee
Confidence 999999999988 7878 559999987766542 1122233667888775 6689999999987653
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=4.1e-21 Score=179.80 Aligned_cols=231 Identities=11% Similarity=0.153 Sum_probs=166.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC--------------------------------------cceeeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--------------------------------------DACILTSDS 142 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~--------------------------------------~~~~~~~~~ 142 (427)
+|+++++|.+...+++| ..+.+++|+.++... ........|
T Consensus 375 dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence 67777777766666666 345666777664200 112222469
Q ss_pred cCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEe-----ehhcccCCCceeee
Q 014302 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV-----DFLRSQNGEQITAL 217 (427)
Q Consensus 143 ~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~ 217 (427)
.+.+++++.+||+..++..+.|.+|++|+...-.. .++.+-+.+ +.++ ....|.|+
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-----------------~~gt~~k~lsl~~~rtLe--l~ddvL~v 514 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-----------------VPGTQKKVLSLKHTRTLE--LEDDVLCV 514 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-----------------cCcccceeeeeccceEEe--ccccEEEE
Confidence 99999999999998788888889999999862111 001110111 1111 35678899
Q ss_pred EeCCCCCCcccCc-----------------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCC
Q 014302 218 SWGPDGRFPGLGT-----------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGF 279 (427)
Q Consensus 218 ~~spdg~~l~~~~-----------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~ 279 (427)
++||||++++.+- .+.+|.-+|.+|.+|||++.+++|+.|+.|+||-++-+.|. .+.+|...
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS 594 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS 594 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence 9999999976431 14568899999999999999999999999999999999995 45599999
Q ss_pred eeEEEECCCCCEEEEEEcCCceeeeeeeCC--CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc
Q 014302 280 VTGATWDPEGRMILLAFAGSLTLGSIHFAS--KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI 357 (427)
Q Consensus 280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~ 357 (427)
|+++.|-|.. +++++++.++.++.|+-.. .-..+.+|.. .|++++.+|+|.++++ ++.|
T Consensus 595 vm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~--------------ev~cLav~~~G~~vvs---~shD- 655 (888)
T KOG0306|consen 595 VMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS--------------EVWCLAVSPNGSFVVS---SSHD- 655 (888)
T ss_pred eeEEEEcccc-eeEEEecCcceEEeechhhhhhheeeccchh--------------eeeeeEEcCCCCeEEe---ccCC-
Confidence 9999999955 4555566666777775443 2234555544 8899999999999998 6666
Q ss_pred ceeEEEEEEeccCce
Q 014302 358 YKGLIAIYDARRTPL 372 (427)
Q Consensus 358 ~~g~i~vwd~~~~~~ 372 (427)
..|++|......+
T Consensus 656 --~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 656 --KSIRLWERTDEIL 668 (888)
T ss_pred --ceeEeeeccCcce
Confidence 5699999765443
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-20 Score=155.95 Aligned_cols=238 Identities=13% Similarity=0.202 Sum_probs=171.8
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
.++++| +++.+.++.+|.+|.+++.|.++.||--..+ +..-.+.+|.+.|+++...-+.+.++..+.|.++++||+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 345666 8999999999999999999999999976555 677888999999999999998866666667799999999
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------------------
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG------------------------- 227 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~------------------------- 227 (427)
. +| +.+..++ ...+|..+.|+++|++..
T Consensus 82 ~---------tG----------------k~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 82 E---------TG----------------KQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred C---------CC----------------cEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 8 22 2222222 356677777777777621
Q ss_pred -cCce---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302 228 -LGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLT 301 (427)
Q Consensus 228 -~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~ 301 (427)
...+ +..+...++.+-|+|.+++|++|..||.|.+||+++++.. .-..|...|+.+++++|..++++++.+. +
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-t 213 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-T 213 (327)
T ss_pred cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-c
Confidence 1111 2335578889999999999999999999999999998652 2337888999999999999999875444 6
Q ss_pred eeeeeeCCCC---------C-------Cccccccc------cccc--------------------ccee-eccCCceeEE
Q 014302 302 LGSIHFASKP---------P-------SLDAHLLP------VDLP--------------------DIVS-LTGSQGIEKI 338 (427)
Q Consensus 302 i~~~~~~~~~---------~-------~~~~~~~~------~~~~--------------------~~~~-~~~~~~i~~v 338 (427)
-++|++.+.. + .+..|... .++. +... ..|=++|++|
T Consensus 214 akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv 293 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV 293 (327)
T ss_pred ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCccee
Confidence 6666655421 0 00011000 0000 0001 1234699999
Q ss_pred EECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 339 AWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
+|+|+|+..++ |++| |.|++....
T Consensus 294 AfhPdGksYsS---GGED---G~VR~h~Fd 317 (327)
T KOG0643|consen 294 AFHPDGKSYSS---GGED---GYVRLHHFD 317 (327)
T ss_pred EECCCCccccc---CCCC---ceEEEEEec
Confidence 99999999988 9999 779987553
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=3.8e-20 Score=167.16 Aligned_cols=216 Identities=21% Similarity=0.381 Sum_probs=165.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
.+..+.|+|++++|++++.|+.+++|++... ........|...+.++.|+|++ .+++++. ++.+.+|++.
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~------ 123 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVE------ 123 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECC------
Confidence 5789999999999999999999999999875 3444445778899999999997 6777776 7999999986
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL 242 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~ 242 (427)
.......+..+ ...+.+++|+|+++++..+. .+..+...+.++
T Consensus 124 -------------------~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 183 (289)
T cd00200 124 -------------------TGKCLTTLRGH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183 (289)
T ss_pred -------------------CcEEEEEeccC-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence 11233334433 66789999999877654332 123455689999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL 319 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 319 (427)
.|+|+++.+++++.++.|++||++..+..... .+...+.+++|+|++.+++++ ..++.+++|++..... .+.
T Consensus 184 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~i~~~~~~~~~~~~~---- 258 (289)
T cd00200 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG-SEDGTIRVWDLRTGECVQTLS---- 258 (289)
T ss_pred EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE-cCCCcEEEEEcCCceeEEEcc----
Confidence 99999999998888999999999987764444 788899999999997777654 4455888888765311 111
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
.+...|.+++|+|++++|++ ++.| +.|++|+
T Consensus 259 ----------~~~~~i~~~~~~~~~~~l~~---~~~d---~~i~iw~ 289 (289)
T cd00200 259 ----------GHTNSVTSLAWSPDGKRLAS---GSAD---GTIRIWD 289 (289)
T ss_pred ----------ccCCcEEEEEECCCCCEEEE---ecCC---CeEEecC
Confidence 23347899999999999988 5666 6799996
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=2.5e-20 Score=192.07 Aligned_cols=229 Identities=17% Similarity=0.259 Sum_probs=160.1
Q ss_pred ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeEEEEeccCCCC
Q 014302 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i~iw~~~~~~~ 177 (427)
.|.+++|+|. +.+||+++.|++|+|||+... .......+|...|++++|+| ++ .+|++| .|+.|++||+.
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~-~~L~Sgs~Dg~v~iWd~~---- 606 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADP-TLLASGSDDGSVKLWSIN---- 606 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCCCC-CEEEEEcCCCEEEEEECC----
Confidence 6889999875 679999999999999999876 45555678999999999997 55 566555 56999999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC-CCCCCcccCc------------------eEEeccCC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRFPGLGT------------------PIRRGFGG 238 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~------------------~~~~~~~~ 238 (427)
.+ ..+..+.. ...+.++.|+ ++|.+++.+. .+..|...
T Consensus 607 -----~~----------------~~~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 607 -----QG----------------VSIGTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred -----CC----------------cEEEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 11 12222332 3467788884 4566544321 23447788
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCC------c-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWT------S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 311 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~------~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~ 311 (427)
|.++.|. ++.+|++++.|+.|++||++... . ..+.+|...+..++|+|++.+|++++ .++.+.+|+.....
T Consensus 664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~ 741 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCC
Confidence 9999997 78899999999999999997532 1 23447888999999999999998875 45577777754432
Q ss_pred CCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 312 PSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
.......... .........+...|.+++|+|++..|++ ++.+ |.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva---~~~d---G~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA---ANST---GNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE---ecCC---CcEEEEec
Confidence 1100000000 0000111123346999999999999988 5666 67999996
No 60
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.5e-20 Score=173.19 Aligned_cols=285 Identities=18% Similarity=0.253 Sum_probs=192.8
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--Cccee---eccCCcCCeeEEEEccCCCceEEEecCCeE
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACI---LTSDSQRDVKVLEWRPNGGRSLSVGCKGGI 167 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~~~~~---~~~~~~~~v~~l~~sp~~~~~la~g~~~~i 167 (427)
.++.+| -|+++.|+|.+..|++++.|.++.+|.-+... +.... ...+...+..+.-|+|++..+|+-|..|+.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 456677 89999999999999999999999999876541 11111 112234568899999999767777777999
Q ss_pred EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCc---------------------
Q 014302 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFP--------------------- 226 (427)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l--------------------- 226 (427)
++|... + ...|.....+.+| ...|+.++|+|.|+++
T Consensus 341 hlWkt~-d---------------------~~~w~~~~~iSGH-~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w 397 (764)
T KOG1063|consen 341 HLWKTK-D---------------------KTFWTQEPVISGH-VDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW 397 (764)
T ss_pred EEEecc-C---------------------ccceeeccccccc-cccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence 999832 1 1123333334444 5555555665555540
Q ss_pred ----------------------------------------------------------------------c---------
Q 014302 227 ----------------------------------------------------------------------G--------- 227 (427)
Q Consensus 227 ----------------------------------------------------------------------~--------- 227 (427)
+
T Consensus 398 HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~ 477 (764)
T KOG1063|consen 398 HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG 477 (764)
T ss_pred eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence 0
Q ss_pred ---cC------------------------------------ceEEeccCCeEEEEEccCCCEEEEEecCC-----cEEEE
Q 014302 228 ---LG------------------------------------TPIRRGFGGLSILKWSPTGDYFFAAKFDG-----TFYLW 263 (427)
Q Consensus 228 ---~~------------------------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iw 263 (427)
+| ..+.+|...|++++.+|+|+++|+++... .|++|
T Consensus 478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEE
Confidence 00 01445888999999999999999887654 49999
Q ss_pred EcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC
Q 014302 264 ETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 342 (427)
Q Consensus 264 d~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 342 (427)
+..++.... +..|.-.|+.++|||||++|++++.+. .|.+++.......... + .....|..-|+++.|+|
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR----t~sl~~~~~~~~~e~~---f--a~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR----TVSLYEVQEDIKDEFR---F--ACLKAHTRIIWDCSWSP 628 (764)
T ss_pred eccchhhhheecccceEEEEEEECCCCcEEEEeecCc----eEEeeeeecccchhhh---h--ccccccceEEEEcccCc
Confidence 999988755 669999999999999999999887555 5555543211111111 0 00112333689999999
Q ss_pred CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC--CCceeEEEeeCceEEEEecc
Q 014302 343 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK--QGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~g~~l~v~~~~g~i~~~~~~ 420 (427)
++.++|+ ++.| ++|+||.....+.-.+.. +...........++|+|.+. .+.+++||...|.|.+|..+
T Consensus 629 de~~FaT---aSRD---K~VkVW~~~~~~d~~i~~---~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 629 DEKYFAT---ASRD---KKVKVWEEPDLRDKYISR---FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccceeEE---ecCC---ceEEEEeccCchhhhhhh---hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9999988 6777 779999998763111110 01111122244667777653 46689999999999999976
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=2.7e-21 Score=169.47 Aligned_cols=264 Identities=13% Similarity=0.176 Sum_probs=192.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|..+.|-++...|++|+.|..|++|+.............+..++|+++.|.+++..+||.+.++.+++|+++
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd------- 249 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD------- 249 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-------
Confidence 8999999999999999999999999999877544555666777889999999999889999999999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEE--------------e--ccCCeEEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIR--------------R--GFGGLSILKW 244 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~--------------~--~~~~v~~~~~ 244 (427)
+......+.+| ...|+++.|.-....+.++..-+ . ....+..+..
T Consensus 250 ------------------~~r~~~TLsGH-tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 250 ------------------SLRLRHTLSGH-TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC 310 (459)
T ss_pred ------------------chhhhhhhccc-ccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence 44566677776 88888888766544332222100 0 1122333333
Q ss_pred ccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccc
Q 014302 245 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVD 322 (427)
Q Consensus 245 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~ 322 (427)
+ ...+++|-.|++||+||+++..+.......+.|+++..+++|..|++.+.++ ++.++++..... .+..
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-tl~viDlRt~eI~~~~sA------ 381 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-TLKVIDLRTKEIRQTFSA------ 381 (459)
T ss_pred c--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-ceeeeecccccEEEEeec------
Confidence 3 4456688899999999999998877666677999999999999999875555 777777766421 1110
Q ss_pred cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302 323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 402 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g 402 (427)
. .+.-+...+.+.|||+++|+|. |+.| |.|+||++.++++... +..........+++|.|. |
T Consensus 382 ---~-g~k~asDwtrvvfSpd~~YvaA---GS~d---gsv~iW~v~tgKlE~~-----l~~s~s~~aI~s~~W~~s---G 443 (459)
T KOG0288|consen 382 ---E-GFKCASDWTRVVFSPDGSYVAA---GSAD---GSVYIWSVFTGKLEKV-----LSLSTSNAAITSLSWNPS---G 443 (459)
T ss_pred ---c-ccccccccceeEECCCCceeee---ccCC---CcEEEEEccCceEEEE-----eccCCCCcceEEEEEcCC---C
Confidence 0 1111225789999999999999 7887 7799999999988633 223334435779999985 4
Q ss_pred ceeEEEeeCceEEEE
Q 014302 403 PLLSVCWSSGFCCTY 417 (427)
Q Consensus 403 ~~l~v~~~~g~i~~~ 417 (427)
.-|..+..++.+.+|
T Consensus 444 ~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 444 SGLLSADKQKAVTLW 458 (459)
T ss_pred chhhcccCCcceEec
Confidence 434444467777776
No 62
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=1.2e-19 Score=173.99 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=158.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC---------CC--cceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------GK--DACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGI 167 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~---------~~--~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i 167 (427)
.|+....++++..+++++.+..+..|+...+ ++ .......+|.+.|++++|+| ++ .+|+++ .|+.|
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-QKLFTASEDGTI 100 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEE
Confidence 4555556667666666666666666654332 11 11123467999999999999 66 556655 56999
Q ss_pred EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT 247 (427)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~ 247 (427)
++|++...+. .... .. .-..+..|...|.+++|+|+
T Consensus 101 kIWdi~~~~~-------------------------~~~~----~~---------------~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 101 MGWGIPEEGL-------------------------TQNI----SD---------------PIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EEEecCCCcc-------------------------cccc----Cc---------------ceEEecCCCCcEEEEEeCcC
Confidence 9999971100 0000 00 01134457788999999998
Q ss_pred C-CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccccccc
Q 014302 248 G-DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDL 323 (427)
Q Consensus 248 g-~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~ 323 (427)
+ .+|++++.|++|+|||+++++.. .+..|...|.+++|+|+|+.|++++ .++.+++|++.+... .+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs-~Dg~IrIwD~rsg~~v~tl~~H~----- 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS-KDKKLNIIDPRDGTIVSSVEAHA----- 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec-CCCEEEEEECCCCcEEEEEecCC-----
Confidence 6 58889999999999999988763 3447889999999999999998765 555888888766421 111111
Q ss_pred ccceeeccCCceeEEEECCCCCEEEEEE-ecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302 324 PDIVSLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 402 (427)
Q Consensus 324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~-~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g 402 (427)
+..+..+.|.+++..|+++. ..+.| +.|++||++..... ...... ..........|.++ +
T Consensus 211 --------~~~~~~~~w~~~~~~ivt~G~s~s~D---r~VklWDlr~~~~p----~~~~~~-d~~~~~~~~~~d~d---~ 271 (493)
T PTZ00421 211 --------SAKSQRCLWAKRKDLIITLGCSKSQQ---RQIMLWDTRKMASP----YSTVDL-DQSSALFIPFFDED---T 271 (493)
T ss_pred --------CCcceEEEEcCCCCeEEEEecCCCCC---CeEEEEeCCCCCCc----eeEecc-CCCCceEEEEEcCC---C
Confidence 11345678999888877642 22345 67999999764321 111111 11111223345443 5
Q ss_pred ceeEEEe-eCceEEEEecc
Q 014302 403 PLLSVCW-SSGFCCTYPLI 420 (427)
Q Consensus 403 ~~l~v~~-~~g~i~~~~~~ 420 (427)
.+|.+|. .||.|.+|++.
T Consensus 272 ~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CEEEEEEeCCCeEEEEEee
Confidence 6677765 59999999864
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.6e-21 Score=168.61 Aligned_cols=222 Identities=16% Similarity=0.223 Sum_probs=162.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|..+.||||.++|++++.|..+++||.+++.. ......++...+.+++|.|||.++++.+.|+++..|+++ |+
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~-~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn--- 344 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL-RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GN--- 344 (519)
T ss_pred ceEEEEECCCCCeEEecCchHheeeccCCcchh-hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cc---
Confidence 899999999999999999999999999999822 112223356889999999999766666677999999997 11
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce----------------EEeccCCeEEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP----------------IRRGFGGLSILKW 244 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------------~~~~~~~v~~~~~ 244 (427)
. ....++-....|.+++.++||+++..... +-....+|+++++
T Consensus 345 ------------------~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~i 403 (519)
T KOG0293|consen 345 ------------------I---LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSI 403 (519)
T ss_pred ------------------h---hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEE
Confidence 1 11122222456889999999998432111 1113468999999
Q ss_pred ccCCCEEEEEecCCcEEEEEcCCCCc-cccccCC--CCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCC--Cccccc
Q 014302 245 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPP--SLDAHL 318 (427)
Q Consensus 245 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~--~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~ 318 (427)
|.||+++++.-.+..+++||++.... .++.+|+ ..+..-||.--. .++++ +++++.+++|+..+... .+.||.
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS-GSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS-GSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe-cCCCceEEEEEccCCceeEeecCCc
Confidence 99999999999999999999996654 3444444 456667787544 55555 56666999999877633 556666
Q ss_pred cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
. .|++|+|+|....+..+ +++| |+|+||....
T Consensus 483 ~--------------~vNcVswNP~~p~m~AS--asDD---gtIRIWg~~~ 514 (519)
T KOG0293|consen 483 K--------------TVNCVSWNPADPEMFAS--ASDD---GTIRIWGPSD 514 (519)
T ss_pred c--------------eeeEEecCCCCHHHhhc--cCCC---CeEEEecCCc
Confidence 5 78999999877654443 7888 8899998753
No 64
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=157.74 Aligned_cols=271 Identities=13% Similarity=0.243 Sum_probs=182.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
...|+.|++.|.+||+|..||.|.|||+.+. .......+|..+|++++||+||..+|.++.|..+.+||+..+.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---- 98 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---- 98 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----
Confidence 4789999999999999999999999999987 4555667899999999999999767777778999999997211
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEec-----cCC
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRG-----FGG 238 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~-----~~~ 238 (427)
+...++ ...+|....|+|-.+...... .+... ...
T Consensus 99 ---------------------~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 99 ---------------------PLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred ---------------------ceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccc
Confidence 111121 356677777777443311000 01100 011
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC-cc
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS-LD 315 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~-~~ 315 (427)
..+..|.+.|+++++|...|.+.+||..+.++.... .....|.++.++..|+.+++-+++. .|+.+.+.+-... -.
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRD 234 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCcc
Confidence 122348889999999999999999999999885443 2346889999999999999876555 7777766642110 01
Q ss_pred ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 395 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 395 (427)
+...+ ..+.+.+.....=.+++||.+|.|++.+ +.. ...++||.-..|.++.+ +.|+... .-+.+.|
T Consensus 235 ~e~e~--~~K~qDvVNk~~Wk~ccfs~dgeYv~a~---s~~--aHaLYIWE~~~GsLVKI-----LhG~kgE-~l~DV~w 301 (405)
T KOG1273|consen 235 GEVEP--EHKLQDVVNKLQWKKCCFSGDGEYVCAG---SAR--AHALYIWEKSIGSLVKI-----LHGTKGE-ELLDVNW 301 (405)
T ss_pred CCcCh--hHHHHHHHhhhhhhheeecCCccEEEec---ccc--ceeEEEEecCCcceeee-----ecCCchh-heeeccc
Confidence 11110 0111111122234678999999999874 322 16799999999998744 3444322 2568889
Q ss_pred ccCCCCCceeEEEeeCceEEEEe
Q 014302 396 HDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 396 ~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
||-+. +++ .-++|.+.+|.
T Consensus 302 hp~rp---~i~-si~sg~v~iw~ 320 (405)
T KOG1273|consen 302 HPVRP---IIA-SIASGVVYIWA 320 (405)
T ss_pred cccee---eee-eccCCceEEEE
Confidence 98632 232 22899999886
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=3e-20 Score=153.79 Aligned_cols=224 Identities=17% Similarity=0.263 Sum_probs=153.8
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~ 179 (427)
.|-.++|+|... ++|+++.|.+|++||.... ++........+ =.-+.|+|+|.++++.+.++.|...|..
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~--k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r------ 136 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDAR------ 136 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccC--cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEec------
Confidence 788899988665 9999999999999999887 34333333333 3457899999666666666888888876
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-----------------cccCceEEeccCCeEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-----------------PGLGTPIRRGFGGLSIL 242 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-----------------l~~~~~~~~~~~~v~~~ 242 (427)
..+.+... .....+..++|+-++.+ |..-..++.|.....|+
T Consensus 137 -------------------~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI 195 (313)
T KOG1407|consen 137 -------------------TYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICI 195 (313)
T ss_pred -------------------ccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEE
Confidence 11111111 12344556666655544 11112356688889999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 321 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 321 (427)
.|+|+|++||+|+.|..+-+||+...-|.. +.-+..+|..+.||.||++||+++.+- .+++......
T Consensus 196 ~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~vetG-------- 263 (313)
T KOG1407|consen 196 EFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEVETG-------- 263 (313)
T ss_pred EECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEecccC--------
Confidence 999999999999999999999999888854 447889999999999999999886554 4554442111
Q ss_pred ccccceeeccCCceeEEEECCCCCEEEEEEecCCC---cceeEEEEEEec
Q 014302 322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---IYKGLIAIYDAR 368 (427)
Q Consensus 322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d---~~~g~i~vwd~~ 368 (427)
.....+...++...|+|+|...+||-+..+.++ +..|+|++|-+.
T Consensus 264 --d~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 264 --DRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred --CeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 112223344577999999999999875332221 113677777553
No 66
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=8.3e-20 Score=162.21 Aligned_cols=259 Identities=17% Similarity=0.278 Sum_probs=181.0
Q ss_pred CCCCCCceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcc--------eeeccCCcCCeeEEEEccCCCceEEEe-cC
Q 014302 95 HLLPEVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGGRSLSVG-CK 164 (427)
Q Consensus 95 ~~l~~~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~--------~~~~~~~~~~v~~l~~sp~~~~~la~g-~~ 164 (427)
.+.....|+.+.+-|+.. .+|+.+..+.|.|||+....... .....+|.+.-.+|+|++.....|+++ .+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 344555788888999886 77888899999999997652222 224567888788999999765555555 45
Q ss_pred CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEE
Q 014302 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKW 244 (427)
Q Consensus 165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~ 244 (427)
++|++||++..+. +++.+.....+..|...|..++|
T Consensus 200 ~~i~lwdi~~~~~--------------------------------------------~~~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 200 HTICLWDINAESK--------------------------------------------EDKVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred CcEEEEecccccc--------------------------------------------CCccccceEEeecCCcceehhhc
Confidence 9999999981110 00111122346678889999999
Q ss_pred ccCCCEEE-EEecCCcEEEEEcCCC--Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Ccccc
Q 014302 245 SPTGDYFF-AAKFDGTFYLWETNTW--TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAH 317 (427)
Q Consensus 245 sp~g~~l~-~~~~dg~v~iwd~~~~--~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~ 317 (427)
++-...|+ +++.|+.+.|||+|++ +. ....+|.+.+.+++|+|-+.+++.+++.++++.+|++.+... ++.+
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~- 314 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG- 314 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC-
Confidence 99777655 8999999999999964 22 233489999999999998887777777777999999888532 2233
Q ss_pred ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE------Eeeee--eeeCCCCCCC
Q 014302 318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS------LSLIG--FIRGPGDNPK 389 (427)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~------~~~~~--~~~~~~~~~~ 389 (427)
+...|..|.|||+..-+..+ .+.| +.+.|||+..-.-.+ -.|.. |+-+ +....
T Consensus 315 -------------H~dev~~V~WSPh~etvLAS--Sg~D---~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~k 375 (422)
T KOG0264|consen 315 -------------HEDEVFQVEWSPHNETVLAS--SGTD---RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAK 375 (422)
T ss_pred -------------CCcceEEEEeCCCCCceeEe--cccC---CcEEEEeccccccccChhhhccCCcceeEEec-Ccccc
Confidence 34489999999986654443 4566 569999996421111 11222 3222 23334
Q ss_pred ceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
...++|.|. .-.+++....|+.+++|.+
T Consensus 376 V~DfsWnp~--ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 376 VSDFSWNPN--EPWTIASVAEDNILQIWQM 403 (422)
T ss_pred cccccCCCC--CCeEEEEecCCceEEEeec
Confidence 668889987 4567888889999999984
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.6e-19 Score=153.37 Aligned_cols=237 Identities=16% Similarity=0.224 Sum_probs=168.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.|++++.+ +.++|+|+.|.+|+|||+... ........|.+.|+++.|.+.-. .+|+++.||.|.+|++.
T Consensus 45 sitavAVs--~~~~aSGssDetI~IYDm~k~--~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----- 115 (362)
T KOG0294|consen 45 SITALAVS--GPYVASGSSDETIHIYDMRKR--KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----- 115 (362)
T ss_pred ceeEEEec--ceeEeccCCCCcEEEEeccch--hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-----
Confidence 78888875 899999999999999999877 44445557899999999998764 57777778999999997
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
.|.++..+ +.|.+.|+.++++|.|+.-++.+.|+
T Consensus 116 --------------------~W~~~~sl--------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~ 149 (362)
T KOG0294|consen 116 --------------------SWELLKSL--------------------------KAHKGQVTDLSIHPSGKLALSVGGDQ 149 (362)
T ss_pred --------------------CeEEeeee--------------------------cccccccceeEecCCCceEEEEcCCc
Confidence 66666544 44566799999999999888888999
Q ss_pred cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302 259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI 338 (427)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 338 (427)
.+++||+-.++.............+.|+|.|.+++....+. +.++.+.+... +. .+.....+.++
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v-~~------------~i~~~~r~l~~ 214 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASV-FR------------EIENPKRILCA 214 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhH-hh------------hhhccccceee
Confidence 99999998888755554444555699999999888765443 33444433210 00 00011245666
Q ss_pred EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
.|. ++..|++ |.++ +.|.+||..+..++ ..+.+.... .-.|.+.-+ ..+.+|..+.+||.|.+|+
T Consensus 215 ~~l-~~~~L~v---G~d~---~~i~~~D~ds~~~~-----~~~~AH~~R--VK~i~~~~~-~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 215 TFL-DGSELLV---GGDN---EWISLKDTDSDTPL-----TEFLAHENR--VKDIASYTN-PEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eec-CCceEEE---ecCC---ceEEEeccCCCccc-----eeeecchhh--eeeeEEEec-CCceEEEEeccCceEEEEE
Confidence 665 4667877 6666 66999999874332 334443333 335554332 2356788888999999999
Q ss_pred cccc
Q 014302 419 LIFR 422 (427)
Q Consensus 419 ~~~~ 422 (427)
+--.
T Consensus 280 ~~~~ 283 (362)
T KOG0294|consen 280 IDME 283 (362)
T ss_pred cccc
Confidence 8665
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.1e-19 Score=173.02 Aligned_cols=207 Identities=13% Similarity=0.167 Sum_probs=166.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
+|+.++|||++.++++|+.|..|+||++... .......+|.+-|+.+.|++.-+.+|+++.|.+|+||++.
T Consensus 53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq------- 123 (1202)
T KOG0292|consen 53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ------- 123 (1202)
T ss_pred ccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc-------
Confidence 8999999999999999999999999999887 5666677899999999999999778887888999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------------------------
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------------------------------- 229 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------------------------- 229 (427)
++ .++..+.+| ...|.|.+|+|...++.++
T Consensus 124 --sr----------------~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 124 --SR----------------KCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred --CC----------------ceEEEEecC-ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 22 677778887 8888999999966552211
Q ss_pred ---------------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCE
Q 014302 230 ---------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRM 291 (427)
Q Consensus 230 ---------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~ 291 (427)
.++.+|..+|..++|+|.-..|++|++|+.|++|.+...+. ....+|.+.|.++.|+|....
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 12456889999999999999999999999999999865543 445599999999999998888
Q ss_pred EEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302 292 ILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 350 (427)
Q Consensus 292 l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~ 350 (427)
+++. ++++.|++|++..... ++. ...+.-+.++-+|..+++|..
T Consensus 265 IlSn-sEDksirVwDm~kRt~v~tfr--------------rendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 265 ILSN-SEDKSIRVWDMTKRTSVQTFR--------------RENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred eEec-CCCccEEEEecccccceeeee--------------ccCCeEEEEEecCCcceeeee
Confidence 8765 5666888888887632 111 112256777778888777773
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.86 E-value=6.2e-20 Score=158.63 Aligned_cols=217 Identities=17% Similarity=0.217 Sum_probs=152.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~ 179 (427)
.|+++.||.+|.+||||..+|.|+||..+++.. .......-..+.-+.|+|.+ .+|+.| .++.+.+|.+...
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~---- 180 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQ---- 180 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCce--EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCc----
Confidence 899999999999999999999999999998832 22223445678889999998 555555 4599999998721
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------------------------
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------------------------- 227 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------------------------- 227 (427)
...+.+.+| ..++++-.|.|||+.+.
T Consensus 181 ---------------------~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 181 ---------------------ALCKVMSGH-NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred ---------------------ceeeEecCC-CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence 122223333 44444444444444311
Q ss_pred -------------------------cCceEE-----------eccCCeEEEE---EccCCCEEEEEecCCcEEEEEcCCC
Q 014302 228 -------------------------LGTPIR-----------RGFGGLSILK---WSPTGDYFFAAKFDGTFYLWETNTW 268 (427)
Q Consensus 228 -------------------------~~~~~~-----------~~~~~v~~~~---~sp~g~~l~~~~~dg~v~iwd~~~~ 268 (427)
+++++. .+...+.++. |+..=.+.|+|+.||+|.|||+...
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 111110 1222333333 4444456779999999999999998
Q ss_pred CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCE
Q 014302 269 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 346 (427)
Q Consensus 269 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~ 346 (427)
+.+....|...|..+.|-+ ..+|++++.++ .++.|+....+. .+.||.. .|.+++.+|++++
T Consensus 319 ~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g-~v~~wDaRtG~l~~~y~GH~~--------------~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 319 TLRHICEHEDGVTKLKWLN-TDYLLTACANG-KVRQWDARTGQLKFTYTGHQM--------------GILDFALSPQKRL 382 (399)
T ss_pred hhheeccCCCceEEEEEcC-cchheeeccCc-eEEeeeccccceEEEEecCch--------------heeEEEEcCCCcE
Confidence 8888888999999999998 67787776555 888888777533 4456655 7899999999999
Q ss_pred EEEEEecCCCcceeEEEEEEec
Q 014302 347 LAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 347 La~~~~~~~d~~~g~i~vwd~~ 368 (427)
+++ .+.| ++.+||++.
T Consensus 383 vvT---~s~D---~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVT---VSDD---NTALVFEVP 398 (399)
T ss_pred EEE---ecCC---CeEEEEecC
Confidence 988 6666 669998864
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=8.2e-20 Score=150.25 Aligned_cols=259 Identities=16% Similarity=0.215 Sum_probs=195.1
Q ss_pred ceeeeEEcC---CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302 101 DLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp---~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~ 176 (427)
+|..++||| +|-+|++++.|+.-.+.+=+++ .-.-...+|.+.|++...+.+- ...|++ .|=+-++||.-
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~--- 89 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAV--- 89 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhh---
Confidence 788999975 7889999999999888655555 5566677899999999988776 444444 45677899976
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------------EEeccCC
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------------IRRGFGG 238 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------------~~~~~~~ 238 (427)
+| ..+..+. +..-|..++|+.|.+.+.+|.. +.+|.++
T Consensus 90 ------tg----------------delhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 90 ------TG----------------DELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred ------hh----------------hhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 22 1122222 3566789999999888766532 5668899
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 318 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 318 (427)
|..+.|....+.|++++.|++||+||.+++...+.......|.++..+++|++|.++- .. .+..|+...- ..++...
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gs-sV~Fwdaksf-~~lKs~k 222 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GS-SVKFWDAKSF-GLLKSYK 222 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cc-eeEEeccccc-cceeecc
Confidence 9999999999999988999999999999999887777888999999999999987642 22 3433433321 1122222
Q ss_pred cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302 319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 398 (427)
Q Consensus 319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 398 (427)
+|. .|.+.+.+|+...+++ |++| ..++.||..++.-+.. + ..+....+.|+.|.|+
T Consensus 223 ~P~------------nV~SASL~P~k~~fVa---Gged---~~~~kfDy~TgeEi~~----~--nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 223 MPC------------NVESASLHPKKEFFVA---GGED---FKVYKFDYNTGEEIGS----Y--NKGHFGPVHCVRFSPD 278 (334)
T ss_pred Ccc------------ccccccccCCCceEEe---cCcc---eEEEEEeccCCceeee----c--ccCCCCceEEEEECCC
Confidence 222 7899999999977776 8988 6799999999887643 2 2334444779999996
Q ss_pred CCCCceeEEEeeCceEEEEec
Q 014302 399 FKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 399 ~~~g~~l~v~~~~g~i~~~~~ 419 (427)
|.+.|.|..||.|.+|-.
T Consensus 279 ---GE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 279 ---GELYASGSEDGTIRLWQT 296 (334)
T ss_pred ---CceeeccCCCceEEEEEe
Confidence 999999999999999964
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=4.4e-20 Score=180.01 Aligned_cols=225 Identities=20% Similarity=0.317 Sum_probs=170.8
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC----------------CCcceeeccCCcCCeeEEEEccCCCceEEEe-c
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------------GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-C 163 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~----------------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~ 163 (427)
.|+|+.|+|||++||+|+.|+.|.||..... .+.......+|...|.++.|+|++ .+|+++ -
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~ 149 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSL 149 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecc
Confidence 8999999999999999999999999999830 123455667899999999999999 566555 5
Q ss_pred CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------
Q 014302 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------ 231 (427)
Q Consensus 164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------ 231 (427)
|++|.||+.. .+..+..+++| ...|..+.|.|-|+++++..-
T Consensus 150 DnsViiwn~~-------------------------tF~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 150 DNSVIIWNAK-------------------------TFELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred cceEEEEccc-------------------------cceeeeeeecc-cccccceEECCccCeeeeecCCceEEEEEcccc
Confidence 6999999987 34677778888 899999999999999774421
Q ss_pred -----EEe------ccCCeEEEEEccCCCEEEEEe-c---CCcEEEEEcCCCCc-cccccCCCCeeEEEECCC-------
Q 014302 232 -----IRR------GFGGLSILKWSPTGDYFFAAK-F---DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE------- 288 (427)
Q Consensus 232 -----~~~------~~~~v~~~~~sp~g~~l~~~~-~---dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spd------- 288 (427)
+.. ....+..+.|||||++|++.. . -.++.|.+-.+++. ..+.+|.+++..+.|+|-
T Consensus 204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 111 123466788999999999532 2 33588888888886 566699999999999981
Q ss_pred -C-------CE-EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcce
Q 014302 289 -G-------RM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 359 (427)
Q Consensus 289 -g-------~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~ 359 (427)
| .| +++.++.|+.|-+|.....++.+-.|.. -...|.+|+|+|||-.|.+|+.+
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l-----------f~~SI~DmsWspdG~~LfacS~D------ 346 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL-----------FNKSIVDMSWSPDGFSLFACSLD------ 346 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh-----------hcCceeeeeEcCCCCeEEEEecC------
Confidence 1 11 5556677778888888665554433322 11379999999999999886444
Q ss_pred eEEEEEEecc
Q 014302 360 GLIAIYDARR 369 (427)
Q Consensus 360 g~i~vwd~~~ 369 (427)
|+|.++.++.
T Consensus 347 GtV~~i~Fee 356 (942)
T KOG0973|consen 347 GTVALIHFEE 356 (942)
T ss_pred CeEEEEEcch
Confidence 5699998864
No 72
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.9e-19 Score=160.07 Aligned_cols=221 Identities=15% Similarity=0.217 Sum_probs=166.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.+.+++.|+||++||+|+.|..|.||+.++. +......+|.+.|.+++|.-....+++++.|.++++|+++
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~------- 274 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID------- 274 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehh-------
Confidence 7899999999999999999999999999988 6666678999999999999777678888889999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
+...+. .+.+|...|..+.-..-++.+.+|+.|+++
T Consensus 275 ------------------~~s~ve--------------------------tlyGHqd~v~~IdaL~reR~vtVGgrDrT~ 310 (479)
T KOG0299|consen 275 ------------------QLSYVE--------------------------TLYGHQDGVLGIDALSRERCVTVGGRDRTV 310 (479)
T ss_pred ------------------HhHHHH--------------------------HHhCCccceeeechhcccceEEecccccee
Confidence 212222 233456677777777677777788899999
Q ss_pred EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302 261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 340 (427)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 340 (427)
++|++.......+.++.+.+.+++|-.+. ++++| +++|.|..|.++.+++.+......-..+......+..+|++++.
T Consensus 311 rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsG-SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~ 388 (479)
T KOG0299|consen 311 RLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSG-SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV 388 (479)
T ss_pred EEEeccccceeeeeCCCCCeeeEEEeccc-ceeec-cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence 99999766667777899999999998754 45555 66679999999998653321111011111111222248999999
Q ss_pred CCCCCEEEEEEecCCCcceeEEEEEEeccC-----ceEEEeeeeeee
Q 014302 341 DASGERLAVSYKGGDDIYKGLIAIYDARRT-----PLISLSLIGFIR 382 (427)
Q Consensus 341 sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-----~~~~~~~~~~~~ 382 (427)
.|...++|+ |+.+ |.|++|.+..+ .+..+...||++
T Consensus 389 i~~sdL~as---GS~~---G~vrLW~i~~g~r~i~~l~~ls~~GfVN 429 (479)
T KOG0299|consen 389 IPGSDLLAS---GSWS---GCVRLWKIEDGLRAINLLYSLSLVGFVN 429 (479)
T ss_pred cccCceEEe---cCCC---CceEEEEecCCccccceeeecccccEEE
Confidence 999999988 7776 77999999876 223444556655
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=6.9e-20 Score=162.69 Aligned_cols=211 Identities=15% Similarity=0.282 Sum_probs=157.8
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
.=++|+|++... .|++++.|++|++||++.... .+...+.+|...|..++|+|....++++.++ +.+.|||+.
T Consensus 179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 367899999876 899999999999999987633 3455677899999999999988788877666 889999997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE-EE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY-FF 252 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~-l~ 252 (427)
.. . . ........|.+.+.|++|+|-+.+ ||
T Consensus 259 ~~-----------------------~------~--------------------~~~~~~~ah~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 259 SN-----------------------T------S--------------------KPSHSVKAHSAEVNCVAFNPFNEFILA 289 (422)
T ss_pred CC-----------------------C------C--------------------CCcccccccCCceeEEEeCCCCCceEE
Confidence 10 0 0 011234568889999999997765 55
Q ss_pred EEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC---ccccccccccccce
Q 014302 253 AAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---LDAHLLPVDLPDIV 327 (427)
Q Consensus 253 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~ 327 (427)
+|+.|++|++||+|+... ..+.+|...|..|.|||....++.+++.++.+.+|++..-... -.+...|. ..
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp----El 365 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP----EL 365 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc----ce
Confidence 999999999999998876 4555999999999999988777666667778888887763111 11111111 11
Q ss_pred eec---cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 328 SLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 328 ~~~---~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
.+. |...|..+.|+|+..+++++ ..+| +.+.||++..
T Consensus 366 lF~HgGH~~kV~DfsWnp~ePW~I~S--vaeD---N~LqIW~~s~ 405 (422)
T KOG0264|consen 366 LFIHGGHTAKVSDFSWNPNEPWTIAS--VAED---NILQIWQMAE 405 (422)
T ss_pred eEEecCcccccccccCCCCCCeEEEE--ecCC---ceEEEeeccc
Confidence 222 33479999999999998887 6666 6799999863
No 74
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.2e-19 Score=150.39 Aligned_cols=301 Identities=13% Similarity=0.162 Sum_probs=171.5
Q ss_pred ccCCCCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeeccC-CcCCeeEEEEccCCCceEEEecC
Q 014302 89 LHPDHVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSD-SQRDVKVLEWRPNGGRSLSVGCK 164 (427)
Q Consensus 89 ~~p~~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~ 164 (427)
.+|-....|.+| .|++++|+.||+.||+++.|++|+||++..-..+ ...+... .-+.-+.++|+||...+++....
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence 344456667777 8999999999999999999999999998765111 1111111 12245788999999666554434
Q ss_pred -CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhccc--------CCCceeeeEeCCCCCCcccCceEEec
Q 014302 165 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--------NGEQITALSWGPDGRFPGLGTPIRRG 235 (427)
Q Consensus 165 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~spdg~~l~~~~~~~~~ 235 (427)
+++++|.+.+...-....+.-......+++.-.-. +..+... ......-+-|+-.|+.|. .+...
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~---~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~---~idtn 227 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD---IINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ---SIDTN 227 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccc---eEEEeecCCceEEEEecCCCcEEEEecCCceee---eeccc
Confidence 78999987631110000000000000000000000 0000000 000111233433333333 11122
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
....+..+.||+|++|++++.--.|++|.+--.+. ..+.+|...|..++||++.+.+++.+.++ .|+
T Consensus 228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG----~wr 303 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG----KWR 303 (420)
T ss_pred cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC----cEE
Confidence 33456778999999999999999999998743321 12338999999999999999999886555 555
Q ss_pred eCCCCCCcccccccccccccee--eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 307 FASKPPSLDAHLLPVDLPDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
+|+....++....|.-+..... ...++....++.+|.|+.||+++ |+ + |++|..++++.+... -...
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs-~-----l~~~~se~g~~~~~~----e~~h 372 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GS-D-----LKVFASEDGKDYPEL----EDIH 372 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CC-c-----eEEEEcccCccchhH----HHhh
Confidence 6654333333333322222211 11223445899999999999963 32 2 999999887654111 0111
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 416 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~ 416 (427)
.. ...|++|.++ |..++.| .+-.+.+
T Consensus 373 ~~--~Is~is~~~~---g~~~atc-Gdr~vrv 398 (420)
T KOG2096|consen 373 ST--TISSISYSSD---GKYIATC-GDRYVRV 398 (420)
T ss_pred cC--ceeeEEecCC---CcEEeee-cceeeee
Confidence 22 2458888885 6556655 3444443
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=5.5e-19 Score=155.96 Aligned_cols=220 Identities=14% Similarity=0.256 Sum_probs=169.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.+.++...|....+++|+.|..+.++|.... +...+..+|...|+++.|+|+...++....+..|+||.....
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----- 293 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----- 293 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----
Confidence 7889999988889999999999999988777 677788899999999999999855555556788999998621
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCceEEecc-----CCeEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGTPIRRGF-----GGLSI 241 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~~~~~~~-----~~v~~ 241 (427)
......+.| ..+|+.+..+|.|+++. .+..+..+. -.+++
T Consensus 294 --------------------s~~~~~~~h-~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts 352 (506)
T KOG0289|consen 294 --------------------SEPTSSRPH-EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS 352 (506)
T ss_pred --------------------cCccccccc-cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence 122223344 78899999999998843 233333322 24889
Q ss_pred EEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 320 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 320 (427)
.+|+|||..|.+|..|+.|+|||+.+... ..+.+|.++|..++|+.+|.+|++++.++ .+++|++..... ++
T Consensus 353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~n-~k----- 425 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRKLKN-FK----- 425 (506)
T ss_pred eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehhhcc-cc-----
Confidence 99999999999999999999999998876 56679999999999999999999887666 688888876421 10
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
...+.....+.+++|++.|++|+. ++++ |+||-..
T Consensus 426 -----t~~l~~~~~v~s~~fD~SGt~L~~---~g~~-----l~Vy~~~ 460 (506)
T KOG0289|consen 426 -----TIQLDEKKEVNSLSFDQSGTYLGI---AGSD-----LQVYICK 460 (506)
T ss_pred -----eeeccccccceeEEEcCCCCeEEe---ecce-----eEEEEEe
Confidence 011112226899999999999999 4555 6666554
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=2.6e-20 Score=160.73 Aligned_cols=281 Identities=14% Similarity=0.161 Sum_probs=188.7
Q ss_pred CCCCC--ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 96 LLPEV--DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 96 ~l~~~--~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
-|.+| .|.|++=+|.. ..+|+|+.||.|+|||+... ........|.+-|..|++.. + .++.+|.|.+|+.|.+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~-~-~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ-T-SFFTVGDDKTVKQWKI 136 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc-c-ceEEecCCcceeeeec
Confidence 34777 89999999988 68999999999999999887 55666678999999999986 3 7999999999999998
Q ss_pred cCCCCccccccCcccccccccC--CCC---cceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302 173 SYPGNAASVRSGAASFLGALSR--GPG---TRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT 247 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~ 247 (427)
+-+ +...-.+.. ....+.. ..+ ..-..+...+.....++..+.| ....+.++.|+|-
T Consensus 137 ~~~--p~~tilg~s-~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw---------------G~Dti~svkfNpv 198 (433)
T KOG0268|consen 137 DGP--PLHTILGKS-VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW---------------GADSISSVKFNPV 198 (433)
T ss_pred cCC--cceeeeccc-cccccccccccccccccCceeeecccccCCccceeec---------------CCCceeEEecCCC
Confidence 621 111111100 0000000 000 0000111122222334444444 3456889999998
Q ss_pred CCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302 248 GDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 326 (427)
Q Consensus 248 g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
...|+ ++..|+.|.+||++...+.........-..++|+|++-. +++++++..++.+++......+..|
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafn-F~~a~ED~nlY~~DmR~l~~p~~v~--------- 268 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFN-FVAANEDHNLYTYDMRNLSRPLNVH--------- 268 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeeeeccccceecCccccc-eeeccccccceehhhhhhcccchhh---------
Confidence 87655 777999999999999998666656667789999995544 4456777688888877643222111
Q ss_pred eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302 327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 406 (427)
Q Consensus 327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~ 406 (427)
..+...|.+|+|||.|+-+++ |+-| .+|+||.++.+....+-. .-..+ .+.|+.|.-+ ..-+.
T Consensus 269 --~dhvsAV~dVdfsptG~Efvs---gsyD---ksIRIf~~~~~~SRdiYh----tkRMq--~V~~Vk~S~D---skyi~ 331 (433)
T KOG0268|consen 269 --KDHVSAVMDVDFSPTGQEFVS---GSYD---KSIRIFPVNHGHSRDIYH----TKRMQ--HVFCVKYSMD---SKYII 331 (433)
T ss_pred --cccceeEEEeccCCCcchhcc---cccc---ceEEEeecCCCcchhhhh----Hhhhh--eeeEEEEecc---ccEEE
Confidence 112338899999999999998 7877 679999997655432110 00112 3668888765 34578
Q ss_pred EEeeCceEEEEeccccCCC
Q 014302 407 VCWSSGFCCTYPLIFRSHL 425 (427)
Q Consensus 407 v~~~~g~i~~~~~~~~~~~ 425 (427)
.|..+|.|.+|--+=+.+|
T Consensus 332 SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ecCCCcceeeeecchhhhc
Confidence 8889999999987655443
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.9e-20 Score=152.49 Aligned_cols=238 Identities=17% Similarity=0.262 Sum_probs=165.8
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce-EEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~-la~g~~~~i~iw~~~~~~~~ 178 (427)
.+..++|+++.. .+++++.||+++|||+... ..+......|...|.++.|++...+. |.++-|++|++|+.+.+
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--- 137 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--- 137 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---
Confidence 678999999765 7888999999999996544 34666777899999999999865454 44555699999998721
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEEecC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFD 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d 257 (427)
..++ .+++|..-|+..+|||.. +.+++++.|
T Consensus 138 ----------------------~Sv~--------------------------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 138 ----------------------NSVQ--------------------------TFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred ----------------------cceE--------------------------eecCCccEEEEEecCCCCCCeEEEccCC
Confidence 1122 233456678888888855 466699999
Q ss_pred CcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---CccccccccccccceeeccCC
Q 014302 258 GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAHLLPVDLPDIVSLTGSQ 333 (427)
Q Consensus 258 g~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 333 (427)
+++++||++.... ..+..|...+.++.|+.-...++++++.++.++.|++.+.+. .+.+|. -
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~--------------~ 235 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG--------------L 235 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc--------------e
Confidence 9999999987654 455689999999999998877777777788999999988532 222333 3
Q ss_pred ceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 334 GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 334 ~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
.|+.+.|||... .||+ .+-| -+++|||...+.... +.+. ...+-+..+.|.+. ..+.+..+|| |+
T Consensus 236 AVRkvk~Sph~~~lLaS---asYD---mT~riw~~~~~ds~~----e~~~--~HtEFv~g~Dws~~-~~~~vAs~gW-De 301 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLAS---ASYD---MTVRIWDPERQDSAI----ETVD--HHTEFVCGLDWSLF-DPGQVASTGW-DE 301 (311)
T ss_pred EEEEEecCcchhhHhhh---cccc---ceEEecccccchhhh----hhhh--ccceEEeccccccc-cCceeeeccc-cc
Confidence 899999998765 4555 5555 569999987543210 0110 11111223444443 3455666665 56
Q ss_pred eEEEEe
Q 014302 413 FCCTYP 418 (427)
Q Consensus 413 ~i~~~~ 418 (427)
.+.+|+
T Consensus 302 ~l~Vw~ 307 (311)
T KOG0277|consen 302 LLYVWN 307 (311)
T ss_pred ceeeec
Confidence 677765
No 78
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.85 E-value=1.5e-19 Score=152.43 Aligned_cols=214 Identities=14% Similarity=0.195 Sum_probs=161.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
+|..+.|.+|+..|++++.|.+++.||..++ +.......|..-|+++.-+.-|..++.++++ ++++|||+.
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R------ 163 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR------ 163 (338)
T ss_pred eeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec------
Confidence 8999999999999999999999999999998 4555556788889998866667778888877 999999997
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL 242 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~ 242 (427)
.-.+++.+. ...+++++.|..++..+.++. .+++|...|+.+
T Consensus 164 -------------------~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 164 -------------------KKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGL 222 (338)
T ss_pred -------------------ccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeE
Confidence 111222221 255677777777665533221 356788999999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCcccc-----c----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-----S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP- 312 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-----~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~- 312 (427)
..+|+|.++.+-+.|.++++||++....... . ........++|+|+++.+.+++.+. .+++|+......
T Consensus 223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-FVYVWDTTSRRIL 301 (338)
T ss_pred EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-eEEEeecccccEE
Confidence 9999999999999999999999987654221 1 2334567899999999998765444 777777666422
Q ss_pred -CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEE
Q 014302 313 -SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI 364 (427)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~v 364 (427)
.+.||. +.|+.++|+|....|.++ +.| ++|++
T Consensus 302 yklpGh~--------------gsvn~~~Fhp~e~iils~---~sd---k~i~l 334 (338)
T KOG0265|consen 302 YKLPGHY--------------GSVNEVDFHPTEPIILSC---SSD---KTIYL 334 (338)
T ss_pred EEcCCcc--------------eeEEEeeecCCCcEEEEe---ccC---ceeEe
Confidence 233443 388999999999999985 445 45765
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=163.14 Aligned_cols=231 Identities=16% Similarity=0.345 Sum_probs=158.4
Q ss_pred CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-------c---ceeeccCCcCCeeEEEEccCCCc-eEEEecCCe
Q 014302 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-------D---ACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGG 166 (427)
Q Consensus 98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-------~---~~~~~~~~~~~v~~l~~sp~~~~-~la~g~~~~ 166 (427)
..|.|++++|++.|..|++.+....++|+|-+.... + -.....+|...++|.+|+|+.+. +|.++.|++
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 356899999999999888888888999988765411 0 11233579999999999998755 566667799
Q ss_pred EEEEeccCCCCccccccCcccccccccCCCCcceeEe-ehhcccCCCceeeeEeCCCCCCcccCce--------------
Q 014302 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPDGRFPGLGTP-------------- 231 (427)
Q Consensus 167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~-------------- 231 (427)
++||+++.... +...+ ....+....+++.++|+|||++++.+-.
T Consensus 293 lRiWdv~~~k~---------------------q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 293 LRIWDVNNTKS---------------------QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV 351 (641)
T ss_pred EEEEecCCchh---------------------heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc
Confidence 99999983221 11111 1122334667889999999999775421
Q ss_pred ------EEeccC--CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--c--cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 232 ------IRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--S--STSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 232 ------~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~--~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
-..|.. .|++++||+||++|++-+.|+++++||++..+.... . .....-+.++|||+.+.|++|.+-.
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 123554 899999999999999999999999999998775322 2 3445667899999999999876533
Q ss_pred c--eeeeeeeCCCCCCccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302 300 L--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 365 (427)
Q Consensus 300 ~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw 365 (427)
. .-..+.+.+.. .+.....+. ....|..+.|+|.=+.|.+ ++.| |+++||
T Consensus 432 ~~~~~g~L~f~d~~----------t~d~v~ki~i~~aSvv~~~WhpkLNQi~~---gsgd---G~~~vy 484 (641)
T KOG0772|consen 432 NGMTAGTLFFFDRM----------TLDTVYKIDISTASVVRCLWHPKLNQIFA---GSGD---GTAHVY 484 (641)
T ss_pred CCCCCceEEEEecc----------ceeeEEEecCCCceEEEEeecchhhheee---ecCC---CceEEE
Confidence 1 11122222220 011111111 1337889999998888877 5666 668875
No 80
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.9e-19 Score=164.82 Aligned_cols=292 Identities=16% Similarity=0.295 Sum_probs=189.3
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc-eEEEecCCeEEEEecc
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPS 173 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~la~g~~~~i~iw~~~ 173 (427)
..+| .|++|+.+|.|.+||+|+.||+|+||.+.++ .+.......+.|.|++|+|.+.. +||++....+.|-+..
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3445 8999999999999999999999999999988 44444456678999999998754 5677766556655543
Q ss_pred CCCCccc------cccCcc-----cccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------
Q 014302 174 YPGNAAS------VRSGAA-----SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------------- 229 (427)
Q Consensus 174 ~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------- 229 (427)
++..... +...+. .....+.+....+...-..+...+...|..+.|+..|.++++-
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 3211000 000000 0001111111111110000111236778899999999996522
Q ss_pred -------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302 230 -------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT 301 (427)
Q Consensus 230 -------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~ 301 (427)
.+++...+.+.++.|+|...+|++++ ...|+|||+..... .........|.+++.+|.|..|++++.+. .
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~-k 630 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK-K 630 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC-e
Confidence 22344557789999999999999887 68899999977554 33446778899999999999999876555 4
Q ss_pred eeeeeeCC--CC-CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe------ccCce
Q 014302 302 LGSIHFAS--KP-PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA------RRTPL 372 (427)
Q Consensus 302 i~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~------~~~~~ 372 (427)
+..+++.- ++ .++.-| ...+++|+|++.-.++|+ +++| |++.||.- -.+++
T Consensus 631 ~~WfDldlsskPyk~lr~H--------------~~avr~Va~H~ryPLfas---~sdD---gtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLH--------------EKAVRSVAFHKRYPLFAS---GSDD---GTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred eEEEEcccCcchhHHhhhh--------------hhhhhhhhhccccceeee---ecCC---CcEEEEeeeeehhhhcCCc
Confidence 44444432 21 122223 337899999999999999 6666 66888743 22222
Q ss_pred EEEeeeeeeeCCC--CCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 373 ISLSLIGFIRGPG--DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 373 ~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+-|...+++.. .....+.+.|||. ..+|-.+.+||.|.+|+
T Consensus 691 --iVPlK~L~gH~~~~~~gVLd~~wHP~---qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 691 --IVPLKRLRGHEKTNDLGVLDTIWHPR---QPWLFSAGADGTIRLFT 733 (733)
T ss_pred --eEeeeeccCceeecccceEeecccCC---CceEEecCCCceEEeeC
Confidence 23445555542 3344667779997 44555555999999985
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.4e-20 Score=149.74 Aligned_cols=228 Identities=17% Similarity=0.288 Sum_probs=163.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEcc--CCCceEEEecC-CeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCK-GGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~-~~i~iw~~~~~~ 176 (427)
-|..+...--|.+|||++.|++|+|+....... .......+|.++|..++|.. .| .+||+++. +.|.||.-.
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~--- 88 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEE--- 88 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecC---
Confidence 456666777899999999999999999887743 55666789999999999974 55 78888765 999999876
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC--CcccC--------------------ceEEe
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--FPGLG--------------------TPIRR 234 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~--------------------~~~~~ 234 (427)
+++|........| ...|++++|.|.+- .|+++ .....
T Consensus 89 --------------------~g~w~k~~e~~~h-~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 89 --------------------NGRWTKAYEHAAH-SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred --------------------CCchhhhhhhhhh-cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 3344444444444 77888888877432 23222 12345
Q ss_pred ccCCeEEEEEccC---C-----------CEEEEEecCCcEEEEEcCCCC--c-cccccCCCCeeEEEECCCC----CEEE
Q 014302 235 GFGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPEG----RMIL 293 (427)
Q Consensus 235 ~~~~v~~~~~sp~---g-----------~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~v~~v~~spdg----~~l~ 293 (427)
|.-++++++|.|- | +.|++|+.|..|+||+..+.+ . ..+.+|...|..++|.|.- .+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 8889999999986 4 569999999999999988753 2 3355999999999999964 4566
Q ss_pred EEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 294 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 294 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
+ ++.++++.+|.........+.... -+ -...+..++||..|..||++ +.| ..|.+|.-..
T Consensus 228 S-~SqDg~viIwt~~~e~e~wk~tll-~~--------f~~~~w~vSWS~sGn~LaVs---~Gd---Nkvtlwke~~ 287 (299)
T KOG1332|consen 228 S-CSQDGTVIIWTKDEEYEPWKKTLL-EE--------FPDVVWRVSWSLSGNILAVS---GGD---NKVTLWKENV 287 (299)
T ss_pred E-ecCCCcEEEEEecCccCccccccc-cc--------CCcceEEEEEeccccEEEEe---cCC---cEEEEEEeCC
Confidence 5 456667777766543222221111 01 12268999999999999995 333 4599998653
No 82
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.2e-19 Score=169.45 Aligned_cols=259 Identities=14% Similarity=0.175 Sum_probs=177.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
..+.|+|.|+|.+|.+++.|+.|++|+......++..+. .+...|.+++-... +++++..+++|.+|.+... .
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps~-~--- 87 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACYSN--HFLTGSEQNTVLRYKFPSG-E--- 87 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeeccc--ceEEeeccceEEEeeCCCC-C---
Confidence 468899999999999999999999999776632333322 26667877776533 5666667799999998711 1
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~ 243 (427)
...+-.+...++.+++++-+|++++.|. .+++|.++|.++.
T Consensus 88 ----------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 88 ----------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ----------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 0111122366788999999999876442 3677999999999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCccccc---------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CC
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PP 312 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~ 312 (427)
|+|.+.+||+.+.||.|++||+.++...... .....+..++|+|+|..+++...++ .+.+++..+. .-
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKGWELQF 224 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCCceehe
Confidence 9999999999999999999999988763222 1245678899999976666655554 4444443332 11
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 392 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
.+.. ..++..+..+.|+|+|+|||++ +-+ |.|.|||+++... ........|
T Consensus 225 ~Lr~------------~~~ss~~~~~~wsPnG~YiAAs---~~~---g~I~vWnv~t~~~-----------~~~~~~Vc~ 275 (933)
T KOG1274|consen 225 KLRD------------KLSSSKFSDLQWSPNGKYIAAS---TLD---GQILVWNVDTHER-----------HEFKRAVCC 275 (933)
T ss_pred eecc------------cccccceEEEEEcCCCcEEeee---ccC---CcEEEEecccchh-----------ccccceeEE
Confidence 1111 1122248999999999999994 444 5699999987332 112223668
Q ss_pred EEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCTYPLIF 421 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~~ 421 (427)
++|+|+.. -+++-...|...+++-+-
T Consensus 276 ~aw~p~~n---~it~~~~~g~~~~~~~iv 301 (933)
T KOG1274|consen 276 EAWKPNAN---AITLITALGTLGVSPAIV 301 (933)
T ss_pred EecCCCCC---eeEEEeeccccccChhhc
Confidence 88998743 355555566555555433
No 83
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=4.7e-19 Score=153.82 Aligned_cols=242 Identities=22% Similarity=0.351 Sum_probs=162.7
Q ss_pred CCEEEEEeCCCeEEEEEccCC--------------CCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCC
Q 014302 111 KHIVAFISGSTQVIVRDYEDS--------------GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP 175 (427)
Q Consensus 111 g~~lat~~~d~~v~vwd~~~~--------------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~ 175 (427)
..+.|+-+..|.|+||++... ...++....+|...=+.|.|||-....|++| +.+.|++|...
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~-- 242 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS-- 242 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec--
Confidence 347777788999999998542 2234455567888889999999543445555 55889999886
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE-EEEE
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY-FFAA 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~-l~~~ 254 (427)
++ .|. ....++..|...|-.++|||..+. |++|
T Consensus 243 -------~g--------------~W~-------------------------vd~~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 243 -------TG--------------SWK-------------------------VDQRPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred -------cC--------------cee-------------------------ecCccccccccchhhhccCCccCceEEee
Confidence 11 222 123355668889999999998775 5599
Q ss_pred ecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302 255 KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 331 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (427)
+.||+|+|||+|++.. .....|.+.|..+.|+.+-.+|++| .++|++.+|++..-+.. .|+ .....|
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG-~DdGt~~iwDLR~~~~~-----~pV----A~fk~H 346 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASG-GDDGTLSIWDLRQFKSG-----QPV----ATFKYH 346 (440)
T ss_pred ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeec-CCCceEEEEEhhhccCC-----Ccc----eeEEec
Confidence 9999999999999854 3445899999999999988867654 66778888888774321 111 233345
Q ss_pred CCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCce------------EEEeee-eeee-CCCCCCCceeEEec
Q 014302 332 SQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPL------------ISLSLI-GFIR-GPGDNPKPVAFSFH 396 (427)
Q Consensus 332 ~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~------------~~~~~~-~~~~-~~~~~~~~~~~~f~ 396 (427)
..+|+++.|+|... .||+ ++.| ..|.|||+....- ..+.|+ =|+- |..+ .-.+.||
T Consensus 347 k~pItsieW~p~e~s~iaa---sg~D---~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke---~KevhWH 417 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAA---SGED---NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE---VKEVHWH 417 (440)
T ss_pred cCCeeEEEeccccCceEEe---ccCC---CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH---hhhheec
Confidence 56999999998654 4545 4555 4599999954221 111111 1222 2111 2357788
Q ss_pred cCCCCCceeEEEeeCceEEEEeccc
Q 014302 397 DKFKQGPLLSVCWSSGFCCTYPLIF 421 (427)
Q Consensus 397 ~~~~~g~~l~v~~~~g~i~~~~~~~ 421 (427)
+.. .|.++..+ -+|.-.|+++.+
T Consensus 418 ~Qi-PG~lvsTa-~dGfnVfktIsv 440 (440)
T KOG0302|consen 418 RQI-PGLLVSTA-IDGFNVFKTISV 440 (440)
T ss_pred cCC-CCeEEEec-ccceeEEEeccC
Confidence 864 36666666 788888888743
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=7.6e-20 Score=150.44 Aligned_cols=204 Identities=14% Similarity=0.181 Sum_probs=157.3
Q ss_pred CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (427)
Q Consensus 98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~ 177 (427)
..|-|.+++|+.|.++|++|+.+..+||+|++... .+.....+|.+.|..+-|....+.+|.++.+++|++||..
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r---- 173 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR---- 173 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec----
Confidence 34589999999999999999999999999998773 3455667899999999999877678888778999999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
++ ..++ .+. ...+|.++.++++|++|.++. .
T Consensus 174 -----Tg----------------t~v~-----------sL~----------------~~s~VtSlEvs~dG~ilTia~-g 204 (334)
T KOG0278|consen 174 -----TG----------------TEVQ-----------SLE----------------FNSPVTSLEVSQDGRILTIAY-G 204 (334)
T ss_pred -----cC----------------cEEE-----------EEe----------------cCCCCcceeeccCCCEEEEec-C
Confidence 22 1122 111 134688999999999887654 7
Q ss_pred CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302 258 GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
+.|..||..+....+-......|.+..++|+...+++ ++++..++.+++..... +.. ....+.++|.+
T Consensus 205 ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa-Gged~~~~kfDy~TgeE----------i~~-~nkgh~gpVhc 272 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA-GGEDFKVYKFDYNTGEE----------IGS-YNKGHFGPVHC 272 (334)
T ss_pred ceeEEeccccccceeeccCccccccccccCCCceEEe-cCcceEEEEEeccCCce----------eee-cccCCCCceEE
Confidence 8899999998887666566678899999998866665 45665777777776411 000 01234558999
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
|.|+|||...|+ |++| |+|+||.+..++..
T Consensus 273 VrFSPdGE~yAs---GSED---GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 273 VRFSPDGELYAS---GSED---GTIRLWQTTPGKTY 302 (334)
T ss_pred EEECCCCceeec---cCCC---ceEEEEEecCCCch
Confidence 999999999999 9999 88999999766554
No 85
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.3e-19 Score=142.89 Aligned_cols=227 Identities=15% Similarity=0.152 Sum_probs=163.1
Q ss_pred CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCC
Q 014302 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 177 (427)
Q Consensus 99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~ 177 (427)
+++|..++.+.|...+++++.|..+.+||++++ +......+|.+.|+.++|+.+. .++++|+ |..+++||..
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--kv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCR---- 131 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--KVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCR---- 131 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccC--eeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcc----
Confidence 348999999999999999999999999999998 6666778899999999999888 6777664 6999999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
.. ...+++.+... ..+|.++.. .+..|++|+.|
T Consensus 132 -----S~--------------s~ePiQildea--------------------------~D~V~Si~v--~~heIvaGS~D 164 (307)
T KOG0316|consen 132 -----SR--------------SFEPIQILDEA--------------------------KDGVSSIDV--AEHEIVAGSVD 164 (307)
T ss_pred -----cC--------------CCCccchhhhh--------------------------cCceeEEEe--cccEEEeeccC
Confidence 11 22344433322 345666655 45679999999
Q ss_pred CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCccccccccccccceeeccCCce
Q 014302 258 GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGI 335 (427)
Q Consensus 258 g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i 335 (427)
|++|.||++.++... .....+|++++|++||+.++.++-+. +++.++-... ...+++|...- --
T Consensus 165 GtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~s-tlrLlDk~tGklL~sYkGhkn~e------------yk 230 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDS-TLRLLDKETGKLLKSYKGHKNME------------YK 230 (307)
T ss_pred CcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccc-eeeecccchhHHHHHhcccccce------------ee
Confidence 999999999887522 13466899999999999998765444 5655554443 12445554311 22
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 408 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~ 408 (427)
..++++.....+++ |++| |.|++||+.....+...+. ........+++||.- ..+.++
T Consensus 231 ldc~l~qsdthV~s---gSED---G~Vy~wdLvd~~~~sk~~~------~~~v~v~dl~~hp~~---~~f~~A 288 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFS---GSED---GKVYFWDLVDETQISKLSV------VSTVIVTDLSCHPTM---DDFITA 288 (307)
T ss_pred eeeeecccceeEEe---ccCC---ceEEEEEeccceeeeeecc------CCceeEEeeecccCc---cceeEe
Confidence 45677777777877 8888 8899999988776644321 122235688999973 335555
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.2e-18 Score=146.07 Aligned_cols=235 Identities=14% Similarity=0.167 Sum_probs=166.8
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|.++.|+|.++.|++++.||++++|++... .......|..++.+++|.++. ..++.+.++.|+.+|++
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln------- 83 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLN------- 83 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccch---hhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEec-------
Confidence 6899999999999999999999999999876 445556788999999999876 77888888999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
++ ....+..|..++.++.+++-...+++|++|++|
T Consensus 84 --~~-------------------------------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~i 118 (323)
T KOG1036|consen 84 --TG-------------------------------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTI 118 (323)
T ss_pred --CC-------------------------------------------cceeeccCCCceEEEEeeccCCeEEEcccCccE
Confidence 21 111344578899999999888899999999999
Q ss_pred EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-------Cccccc-----cc--------
Q 014302 261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-------SLDAHL-----LP-------- 320 (427)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~-----~~-------- 320 (427)
++||.+.............|.++..+ |..|++|+.+. .+.+|++.+... .++-.. .|
T Consensus 119 k~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r-~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s 195 (323)
T KOG1036|consen 119 KFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDR-KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS 195 (323)
T ss_pred EEEeccccccccccccCceEEEEecc--CCEEEEeecCc-eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE
Confidence 99999975544444445577777654 67788776666 666776665311 111000 00
Q ss_pred -------ccc---c----cce--eecc----C-----CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 321 -------VDL---P----DIV--SLTG----S-----QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 321 -------~~~---~----~~~--~~~~----~-----~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
++. . +.. ...| . -+|++|+|+|-...||+ |+.| |.|.+||+...+.+..
T Consensus 196 SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT---gGsD---G~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 196 SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT---GGSD---GIVNIWDLFNRKRLKQ 269 (323)
T ss_pred eecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe---cCCC---ceEEEccCcchhhhhh
Confidence 000 0 000 0011 1 17999999999999999 7878 8899999988765411
Q ss_pred eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302 376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 410 (427)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~ 410 (427)
-+....+...++|.- .|.+|||+.+
T Consensus 270 -------~~~~~~SI~slsfs~---dG~~LAia~s 294 (323)
T KOG1036|consen 270 -------LAKYETSISSLSFSM---DGSLLAIASS 294 (323)
T ss_pred -------ccCCCCceEEEEecc---CCCeEEEEec
Confidence 122223355677754 4999999976
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=170.20 Aligned_cols=251 Identities=16% Similarity=0.182 Sum_probs=159.6
Q ss_pred CCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccC----------cccccccccCCCCcceeEeehhccc
Q 014302 141 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSG----------AASFLGALSRGPGTRWTLVDFLRSQ 209 (427)
Q Consensus 141 ~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (427)
.|.+.|+++.||+|| ++||+|+. +.|+||.+.... ......+ ..+...+..-..+..-......+.
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e-~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~- 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESE-RMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK- 341 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccc-hhcccccccchhhhhhhhccccCcccccccccccccccccc-
Confidence 699999999999999 77777765 889999986211 0000000 000000000000000000000000
Q ss_pred CCCceeeeEeCCCCCCcccCc---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEEC
Q 014302 210 NGEQITALSWGPDGRFPGLGT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWD 286 (427)
Q Consensus 210 ~~~~v~~~~~spdg~~l~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~s 286 (427)
.....+ ..-|+........ .+.+|.+.|..++||.+ .+|++++.|++||+|++....|.....|...|++|+|+
T Consensus 342 -~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 342 -GSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred -ccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 000111 1112211111222 25679999999999966 48899999999999999999998888999999999999
Q ss_pred C-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302 287 P-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 365 (427)
Q Consensus 287 p-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw 365 (427)
| |.+|+++| +-|+.+++|.+.+........ ...-|++++|+|||++.++ |+-+ |..++|
T Consensus 419 PvDDryFiSG-SLD~KvRiWsI~d~~Vv~W~D-------------l~~lITAvcy~PdGk~avI---Gt~~---G~C~fY 478 (712)
T KOG0283|consen 419 PVDDRYFISG-SLDGKVRLWSISDKKVVDWND-------------LRDLITAVCYSPDGKGAVI---GTFN---GYCRFY 478 (712)
T ss_pred ccCCCcEeec-ccccceEEeecCcCeeEeehh-------------hhhhheeEEeccCCceEEE---EEec---cEEEEE
Confidence 9 66777765 555589999888863211111 1136899999999999988 6655 679999
Q ss_pred EeccCceEEEeeeeeeeCCC-CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 366 DARRTPLISLSLIGFIRGPG-DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 366 d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
++...++..-.....-++.. ...+...++|.|.... -+.|..+|.+|.+|++
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDG 531 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEec
Confidence 99887765443332222221 1224667888886433 5888889999999997
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.8e-18 Score=143.45 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=164.1
Q ss_pred ceeeeEEcCCCCEEEEEeC--CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.|..+.|......+..++. |.+||.-++... +.+....+|...|.+|+.+|-++.+|.++.|++|++||+...+.
T Consensus 58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c- 134 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC- 134 (311)
T ss_pred cccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-
Confidence 5677778655555555555 889999888777 67777889999999999999998888888999999999971110
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
.. .+ +..+-...+|+|+|-.+|++....
T Consensus 135 ------------------------qg--------------------------~l--~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 135 ------------------------QG--------------------------LL--NLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred ------------------------ce--------------------------EE--ecCCCcceeECCCCcEEEEecCCC
Confidence 00 01 122334678999999999888777
Q ss_pred cEEEEEcCCCCccccc------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeec
Q 014302 259 TFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLT 330 (427)
Q Consensus 259 ~v~iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 330 (427)
.|++||+|+....++. ........+.|||||++++.++..+ .+++++..+.. .++..+....
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~~~~tfs~~~~~~--------- 232 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGTVKSTFSGYPNAG--------- 232 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCcEeeeEeeccCCC---------
Confidence 9999999987654332 4466788999999999999876555 77787777652 1222221110
Q ss_pred cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302 331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 410 (427)
Q Consensus 331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~ 410 (427)
.---+.+|+||++++.+ +.+| |+|.+|+++++..+.. .+++ ......|+.|.|.+ .+...+
T Consensus 233 --~~~~~a~ftPds~Fvl~---gs~d---g~i~vw~~~tg~~v~~-----~~~~-~~~~~~~~~fnP~~-----~mf~sa 293 (311)
T KOG1446|consen 233 --NLPLSATFTPDSKFVLS---GSDD---GTIHVWNLETGKKVAV-----LRGP-NGGPVSCVRFNPRY-----AMFVSA 293 (311)
T ss_pred --CcceeEEECCCCcEEEE---ecCC---CcEEEEEcCCCcEeeE-----ecCC-CCCCccccccCCce-----eeeeec
Confidence 01246789999999988 6777 7799999999887633 2232 11124578888874 233445
Q ss_pred CceEEEEe
Q 014302 411 SGFCCTYP 418 (427)
Q Consensus 411 ~g~i~~~~ 418 (427)
+..+.+|-
T Consensus 294 ~s~l~fw~ 301 (311)
T KOG1446|consen 294 SSNLVFWL 301 (311)
T ss_pred CceEEEEe
Confidence 66666653
No 89
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.83 E-value=1.3e-19 Score=155.66 Aligned_cols=256 Identities=12% Similarity=0.152 Sum_probs=153.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|+|+++. ...+++|..|.+|+|||.+.. .......+|.+.|.|+.|... -++..++|.+|++||++
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~------- 265 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVN------- 265 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEecc-------
Confidence 45555543 344556666666666666555 444455566666666666544 45566666666666665
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC------------------cccCceEEeccCCeEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------------------PGLGTPIRRGFGGLSIL 242 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~------------------l~~~~~~~~~~~~v~~~ 242 (427)
++ .++..+-+| -..|..+.|+..-.. +....++.+|...|..+
T Consensus 266 --tg----------------e~l~tlihH-ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 266 --TG----------------EPLNTLIHH-CEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred --CC----------------chhhHHhhh-cceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 22 223333332 333333333211000 11112355678889888
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL 319 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 319 (427)
.|+ .+++++++.|.+|++|++.+.+..... +|...|.++.+. |+++++|+++ .+|++|++..... .++||..
T Consensus 327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD-ntIRlwdi~~G~cLRvLeGHEe 401 (499)
T KOG0281|consen 327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD-NTIRLWDIECGACLRVLEGHEE 401 (499)
T ss_pred ccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC-ceEEEEeccccHHHHHHhchHH
Confidence 884 569999999999999999999985554 899888887764 7777766554 4899998887633 5566655
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE--eeeeeeeCCCCCCCceeEEecc
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL--SLIGFIRGPGDNPKPVAFSFHD 397 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~ 397 (427)
-|.++.|+ .+.+++ |.-| |+|+|||+..+.-..- ...+..........+..++|.-
T Consensus 402 --------------LvRciRFd--~krIVS---GaYD---GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 402 --------------LVRCIRFD--NKRIVS---GAYD---GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred --------------hhhheeec--Cceeee---cccc---ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 56888885 567877 7777 8899999976432110 0011111111222344555542
Q ss_pred CCCCCceeEEEeeCceEEEEecc
Q 014302 398 KFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 398 ~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
- -+..+.-|..|.+|+|-
T Consensus 460 ----f-qIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 460 ----F-QIISSSHDDTILIWDFL 477 (499)
T ss_pred ----e-EEEeccCCCeEEEEEcC
Confidence 1 24445568899999873
No 90
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.82 E-value=1.3e-19 Score=155.72 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=150.8
Q ss_pred CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (427)
Q Consensus 142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (427)
..++|+|+.+.-+ .++....|++|+|||.+ .. .+...+.+| .+.|.|+.|..
T Consensus 196 ~skgVYClQYDD~--kiVSGlrDnTikiWD~n---------~~----------------~c~~~L~GH-tGSVLCLqyd~ 247 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE--KIVSGLRDNTIKIWDKN---------SL----------------ECLKILTGH-TGSVLCLQYDE 247 (499)
T ss_pred cCCceEEEEecch--hhhcccccCceEEeccc---------cH----------------HHHHhhhcC-CCcEEeeeccc
Confidence 3568999999999 59999999999999988 33 345556677 66677776632
Q ss_pred CCCCcccC--------------ce---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc----cccCCCCe
Q 014302 222 DGRFPGLG--------------TP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSGFV 280 (427)
Q Consensus 222 dg~~l~~~--------------~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~v 280 (427)
+.+.+| .+ +-.|...|..+.|+ +.++++++.|.++.+||+.+..... +.+|...|
T Consensus 248 --rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 248 --RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred --eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 232222 22 22377888888886 4589999999999999998876432 33999999
Q ss_pred eEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcc
Q 014302 281 TGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 358 (427)
Q Consensus 281 ~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~ 358 (427)
..+.|+ .+++++++ ++.+|+.|++... ..++.+|.. .|.++.+ .|+++++ |+.|
T Consensus 324 NvVdfd--~kyIVsAS-gDRTikvW~~st~efvRtl~gHkR--------------GIAClQY--r~rlvVS---GSSD-- 379 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSAS-GDRTIKVWSTSTCEFVRTLNGHKR--------------GIACLQY--RDRLVVS---GSSD-- 379 (499)
T ss_pred eeeccc--cceEEEec-CCceEEEEeccceeeehhhhcccc--------------cceehhc--cCeEEEe---cCCC--
Confidence 999997 46887765 4558888888775 224555554 5666554 5777766 8888
Q ss_pred eeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302 359 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 421 (427)
Q Consensus 359 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~ 421 (427)
.+|++||+..+.++. .++|..+- .-|+-|..+ -+..|-=||+|.+|+|--
T Consensus 380 -ntIRlwdi~~G~cLR-----vLeGHEeL--vRciRFd~k-----rIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 380 -NTIRLWDIECGACLR-----VLEGHEEL--VRCIRFDNK-----RIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred -ceEEEEeccccHHHH-----HHhchHHh--hhheeecCc-----eeeeccccceEEEEeccc
Confidence 679999999998873 34454444 347777542 344555799999999753
No 91
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.3e-19 Score=156.62 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=164.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|.+++-+|+|.+|+.|+..+.+++|.+.++ ........|-..|+++.|+-||..++.+|.|+.|.+|.+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~------- 153 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT------- 153 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE-------
Confidence 6999999999999999999999999999998 5666668899999999999999666666677999999986
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEEEecCC
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFAAKFDG 258 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg 258 (427)
..+.....+.. +.-..+..|.-+|+.+...+. ..+|++++.|.
T Consensus 154 --------------------~lv~a~~~~~~---------------~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 154 --------------------DLVSADNDHSV---------------KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred --------------------eecccccCCCc---------------cceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 12221111100 001123446777888876654 46899999999
Q ss_pred cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC---ccccccccccccceeec-cCC-
Q 014302 259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---LDAHLLPVDLPDIVSLT-GSQ- 333 (427)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~- 333 (427)
++++||+..+...........+.+++..|-++.+++|+ .+|.|++..+....+. +.......+......+. +.+
T Consensus 199 t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE 277 (476)
T ss_pred eEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence 99999999988766667788999999999888888765 4558888887764321 10011111222222232 333
Q ss_pred -ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302 334 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 374 (427)
Q Consensus 334 -~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~ 374 (427)
.|++++.+-||..|++ |+.| |.|+|||+.+.+++.
T Consensus 278 ~~ITcLais~DgtlLlS---Gd~d---g~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLS---GDED---GKVCVWDIYSKQCIR 313 (476)
T ss_pred cceeEEEEecCccEEEe---eCCC---CCEEEEecchHHHHH
Confidence 8999999999999999 8888 779999998877653
No 92
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=161.38 Aligned_cols=171 Identities=12% Similarity=0.159 Sum_probs=124.7
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCC---CCEEEEEEcCCceeeeeeeCCC-
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASK- 310 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spd---g~~l~~~~~~~~~i~~~~~~~~- 310 (427)
.-++.+++.||+|++||+|..-|.++|||+...+...+ ..|...|.++.||.. .+.|+++ +.+..|.++++...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa-srdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA-SRDRLIHVYDVKRNY 537 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc-cCCceEEEEeccccc
Confidence 35799999999999999999999999999988776444 499999999999863 3556655 55546666665442
Q ss_pred --CCCccccccccccc-----------------------------------cceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 311 --PPSLDAHLLPVDLP-----------------------------------DIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 311 --~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
..++++|...+..- ..+....++.+.+|+..|+.+++++ +
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t---~ 614 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT---V 614 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE---E
Confidence 33555553322100 0001112347899999999999988 7
Q ss_pred CCCcceeEEEEEEeccCceEEEeeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302 354 GDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 421 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~ 421 (427)
+.|++ |+||++++++... .+.+ ..++...+.+...|. |--|+..++|-.+.+|+|+-
T Consensus 615 cQDrn---irif~i~sgKq~k-----~FKgs~~~eG~lIKv~lDPS---giY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 615 CQDRN---IRIFDIESGKQVK-----SFKGSRDHEGDLIKVILDPS---GIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred ecccc---eEEEeccccceee-----eecccccCCCceEEEEECCC---ccEEEEeecCCceEEEEecc
Confidence 88855 9999999988762 2334 345567888888886 55699999999999999873
No 93
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=1.8e-19 Score=161.08 Aligned_cols=282 Identities=18% Similarity=0.229 Sum_probs=190.7
Q ss_pred cCcchhhhhhcccceeeeccCCCCCccccCCCCCchhhhhccccccccchhhhhhhhhccccccccCCCCCC--------
Q 014302 25 LSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHL-------- 96 (427)
Q Consensus 25 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~-------- 96 (427)
.+.-+.++.+ +.+|..+...|........ .+.+.-++.+..++.++.........||...++
T Consensus 168 ~s~~h~k~~~-dyq~r~~l~~P~dv~vnlR---------~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~ 237 (503)
T KOG0282|consen 168 SSTLHGKSLF-DYQGRSYLQKPKDVGVNLR---------EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDG 237 (503)
T ss_pred cccccccchh-hccccccccCCcccCCccc---------cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCc
Confidence 3333333333 5566666666655544433 112334555556666666655555556533322
Q ss_pred ----------------CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce
Q 014302 97 ----------------LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS 158 (427)
Q Consensus 97 ----------------l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 158 (427)
..+| .|.+++|+++|..+++++.|+.+++||.+++ .+.........++|+.|.|++.++
T Consensus 238 ~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---~~~~~f~~~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 238 LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---QVLSRFHLDKVPTCVKFHPDNQNI 314 (503)
T ss_pred eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc---eEEEEEecCCCceeeecCCCCCcE
Confidence 2233 8999999999999999999999999999998 444444556678999999999555
Q ss_pred -EEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------
Q 014302 159 -LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------ 231 (427)
Q Consensus 159 -la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------ 231 (427)
|+.+.++.|+.||+. ++ ..++.+..| ...|..+.|-++|+...+...
T Consensus 315 fl~G~sd~ki~~wDiR---------s~----------------kvvqeYd~h-Lg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIR---------SG----------------KVVQEYDRH-LGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred EEEecCCCcEEEEecc---------ch----------------HHHHHHHhh-hhheeeeEEccCCceEeeeccCccEEE
Confidence 455567999999998 22 456666666 889999999999887432211
Q ss_pred --------E----EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc----cccccC--CCCeeEEEECCCCCEEE
Q 014302 232 --------I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSST--SGFVTGATWDPEGRMIL 293 (427)
Q Consensus 232 --------~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~--~~~v~~v~~spdg~~l~ 293 (427)
+ ....-...++..+|++++++.-+.|+.|.++.+...-. ..+.+| .+.-..+.|||||++|+
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 1 11223466888999999999999999999998654322 334444 45677899999999999
Q ss_pred EEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEE
Q 014302 294 LAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 294 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd 366 (427)
+|.+++ .+++|+..... ..+..| .+.+..+.|+|... .+|+ ++.+ |.|++|+
T Consensus 449 SGdsdG-~v~~wdwkt~kl~~~lkah--------------~~~ci~v~wHP~e~Skvat---~~w~---G~Ikiwd 503 (503)
T KOG0282|consen 449 SGDSDG-KVNFWDWKTTKLVSKLKAH--------------DQPCIGVDWHPVEPSKVAT---CGWD---GLIKIWD 503 (503)
T ss_pred eecCCc-cEEEeechhhhhhhccccC--------------CcceEEEEecCCCcceeEe---cccC---ceeEecC
Confidence 875554 66666555431 133333 24789999998765 4555 4566 7799996
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=2.5e-18 Score=151.86 Aligned_cols=220 Identities=20% Similarity=0.222 Sum_probs=164.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|+.+.++|+...+++++.|..|+||..... ........|..+|+.+..+|.|+++|++..+++..+.++.
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~------- 333 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS------- 333 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc-------
Confidence 7999999999999999999999999987766 3555667899999999999999888888888998888887
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~~~~ 243 (427)
.+ ...... ........+++.+|+|||.++++|.. +.+|.++|..++
T Consensus 334 --~g--------------~~lt~v-s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~ 396 (506)
T KOG0289|consen 334 --SG--------------SQLTVV-SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAIS 396 (506)
T ss_pred --CC--------------cEEEEE-eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEE
Confidence 22 111111 11122456889999999999776643 556899999999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeee----eCCCCCCcccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIH----FASKPPSLDAH 317 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~----~~~~~~~~~~~ 317 (427)
|+-+|-||++++.|+.|++||+|..+..+.. .....+.+++|.+.|++|+.++ .+-.++... -|.....+.
T Consensus 397 FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~W~~~~~~~-- 473 (506)
T KOG0289|consen 397 FSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKSWTEIKELA-- 473 (506)
T ss_pred eccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEecccccceeeehhh--
Confidence 9999999999999999999999988763333 4445799999999999999873 332444443 222211111
Q ss_pred ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
.+.+..+.+.|....++|++ ++.| ..++++.+
T Consensus 474 ------------~~sg~st~v~Fg~~aq~l~s---~smd---~~l~~~a~ 505 (506)
T KOG0289|consen 474 ------------DHSGLSTGVRFGEHAQYLAS---TSMD---AILRLYAL 505 (506)
T ss_pred ------------hcccccceeeecccceEEee---ccch---hheEEeec
Confidence 12346688999999999998 5555 33666543
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=5.4e-18 Score=159.15 Aligned_cols=257 Identities=19% Similarity=0.242 Sum_probs=189.5
Q ss_pred ceeeeEEcCCCC---EEEEEeCCCeEEEEEccCCCCc-------ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302 101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSGKD-------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (427)
Q Consensus 101 ~V~~l~~sp~g~---~lat~~~d~~v~vwd~~~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw 170 (427)
.+.+++|-|.+. .|++ -.+.++.+|.++..... ......+|+..|+++++|.+. .++++|..+.+++|
T Consensus 322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga~~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASGAGESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeeecCCCcEEEE
Confidence 788899988764 3333 56788988888763111 123445799999999999887 88999999999999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEE
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIR 233 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~ 233 (427)
+.+ ..++++.+. ...+.+..|-|.++++..|. .++
T Consensus 400 n~~-------------------------t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 400 NRD-------------------------TLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred Ecc-------------------------CcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 997 224444444 44677888888777744332 256
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----c--------ccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 234 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----E--------PWSSTSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 234 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~--------~~~~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
.|.+.+++++.+||++.+++|+.|.+|++||...... . ........|.++.+||||++|+++--+.
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn- 530 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN- 530 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-
Confidence 7999999999999999999999999999999642211 1 1225667899999999999999876555
Q ss_pred eeeeeeeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302 301 TLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 378 (427)
Q Consensus 301 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~ 378 (427)
++.++.+.+. -.++-||.. +|.+|..|||++.+++ ++.|+ .|++|-+.-|.|...
T Consensus 531 TVkVyflDtlKFflsLYGHkL--------------PV~smDIS~DSklivT---gSADK---nVKiWGLdFGDCHKS--- 587 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHKL--------------PVLSMDISPDSKLIVT---GSADK---NVKIWGLDFGDCHKS--- 587 (888)
T ss_pred eEEEEEecceeeeeeeccccc--------------ceeEEeccCCcCeEEe---ccCCC---ceEEeccccchhhhh---
Confidence 7777766664 234556666 7799999999999998 77774 499999998887522
Q ss_pred eeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+ -+..+. ..++.|.|. ..+.-.|..||.|.-|+
T Consensus 588 -~-fAHdDS--vm~V~F~P~---~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 588 -F-FAHDDS--VMSVQFLPK---THLFFTCGKDGKVKQWD 620 (888)
T ss_pred -h-hcccCc--eeEEEEccc---ceeEEEecCcceEEeec
Confidence 1 122333 679999996 33555666899999885
No 96
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.8e-18 Score=152.00 Aligned_cols=243 Identities=15% Similarity=0.203 Sum_probs=172.4
Q ss_pred eeeEEcCC-------CCEEEEEeCCCeEEEEEccCCCCcc-------------------eeeccCCcCCeeEEEEccCCC
Q 014302 103 QGVSWHQH-------KHIVAFISGSTQVIVRDYEDSGKDA-------------------CILTSDSQRDVKVLEWRPNGG 156 (427)
Q Consensus 103 ~~l~~sp~-------g~~lat~~~d~~v~vwd~~~~~~~~-------------------~~~~~~~~~~v~~l~~sp~~~ 156 (427)
.|++|.-. |+++|.|+.|..|.|||++-..... .....+|...|.+++|+-.-.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 46666432 5699999999999999997531100 111235888899999999888
Q ss_pred ceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEec
Q 014302 157 RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRG 235 (427)
Q Consensus 157 ~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 235 (427)
.+||+|+. .+|++||++ ++ ++.. .+..|
T Consensus 257 nVLaSgsaD~TV~lWD~~---------~g----------------~p~~--------------------------s~~~~ 285 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVD---------TG----------------KPKS--------------------------SITHH 285 (463)
T ss_pred eeEEecCCCceEEEEEcC---------CC----------------Ccce--------------------------ehhhc
Confidence 89999875 999999998 22 2222 22335
Q ss_pred cCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CC
Q 014302 236 FGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PP 312 (427)
Q Consensus 236 ~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~ 312 (427)
.+.|.++.|+|... .|++|+.|++|.+.|.|..... ......+.|..++|.|.....++++.++|.++-+++.+. .+
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 67788888887654 6779999999999999964442 222677899999999999888888888889998888875 22
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 392 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
. .....|.++|.++++++.-..+.++ ++.| ++|++|++.....-......+. -....|
T Consensus 366 v------------wt~~AHd~~ISgl~~n~~~p~~l~t--~s~d---~~Vklw~~~~~~~~~v~~~~~~-----~~rl~c 423 (463)
T KOG0270|consen 366 V------------WTLKAHDDEISGLSVNIQTPGLLST--ASTD---KVVKLWKFDVDSPKSVKEHSFK-----LGRLHC 423 (463)
T ss_pred e------------eEEEeccCCcceEEecCCCCcceee--cccc---ceEEEEeecCCCCccccccccc-----ccceee
Confidence 1 1222345589999999887777765 7777 7899999865332111111111 111446
Q ss_pred EEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
+++.|.. -.+|++|-..+.+.+|++.
T Consensus 424 ~~~~~~~--a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 424 FALDPDV--AFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccCCCc--ceEEEecCccceEEEeecc
Confidence 7777753 4589999999999999864
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3.6e-18 Score=153.06 Aligned_cols=235 Identities=15% Similarity=0.190 Sum_probs=172.7
Q ss_pred ceeeeEEcCCCCE-EEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~-lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|.+++|+|...+ +|+. ..-.+.||+.... ..........+.|+++.|..|| .+||+|.+ |.|+|+|+.
T Consensus 28 ~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k----- 98 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMK----- 98 (487)
T ss_pred cceeEecCCCCCCceEEe-cccEEEEEecchh--hhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccc-----
Confidence 7999999998873 4444 3557889876665 4444455678899999999999 89998887 889999975
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d 257 (427)
++ ..+. .+..|..++..+.|+|++..++ +|++|
T Consensus 99 ----~r----------------~iLR--------------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 99 ----SR----------------VILR--------------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred ----cH----------------HHHH--------------------------HHhhccCceeEEEecccCCeEEEecCCC
Confidence 10 0111 2445677888999999777555 88999
Q ss_pred CcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302 258 GTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 336 (427)
Q Consensus 258 g~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 336 (427)
+.+++||+.+.... ...+|+..|.+.+|+|-..+++++++.|+.++.|+...... ....+.++.+|.
T Consensus 133 ~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~------------~v~elnhg~pVe 200 (487)
T KOG0310|consen 133 KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS------------RVVELNHGCPVE 200 (487)
T ss_pred ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc------------eeEEecCCCcee
Confidence 99999999888753 33499999999999998888888888888888888876521 123445666999
Q ss_pred EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302 337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 416 (427)
Q Consensus 337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~ 416 (427)
++.+-|.|..+|++ |++. |+|||+.++...... . ........|+.+..+ +.-|-.|.-||++.+
T Consensus 201 ~vl~lpsgs~iasA--gGn~-----vkVWDl~~G~qll~~---~---~~H~KtVTcL~l~s~---~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 201 SVLALPSGSLIASA--GGNS-----VKVWDLTTGGQLLTS---M---FNHNKTVTCLRLASD---STRLLSGSLDRHVKV 264 (487)
T ss_pred eEEEcCCCCEEEEc--CCCe-----EEEEEecCCceehhh---h---hcccceEEEEEeecC---CceEeecccccceEE
Confidence 99999999999997 6654 999999855432111 0 112233668888764 344555559999999
Q ss_pred Ee
Q 014302 417 YP 418 (427)
Q Consensus 417 ~~ 418 (427)
|+
T Consensus 265 fd 266 (487)
T KOG0310|consen 265 FD 266 (487)
T ss_pred EE
Confidence 98
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=8.2e-18 Score=141.71 Aligned_cols=217 Identities=13% Similarity=0.153 Sum_probs=157.1
Q ss_pred CCCCceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC---------cce----eeccCCcCCeeEEEEccCCCceEEEe
Q 014302 97 LPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK---------DAC----ILTSDSQRDVKVLEWRPNGGRSLSVG 162 (427)
Q Consensus 97 l~~~~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~---------~~~----~~~~~~~~~v~~l~~sp~~~~~la~g 162 (427)
..+..|++++..+ .|+++++|+.||.|.|||++.... ... .-..+|.-.|.++.|-|-..-++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3445899999987 578999999999999999987521 011 11134778899999999665566555
Q ss_pred -cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEE
Q 014302 163 -CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSI 241 (427)
Q Consensus 163 -~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~ 241 (427)
.|.++++||.+ ..+....++ ..+.|++
T Consensus 121 SFDhtlKVWDtn-------------------------TlQ~a~~F~---------------------------me~~VYs 148 (397)
T KOG4283|consen 121 SFDHTLKVWDTN-------------------------TLQEAVDFK---------------------------MEGKVYS 148 (397)
T ss_pred cccceEEEeecc-------------------------cceeeEEee---------------------------cCceeeh
Confidence 56999999997 111111111 2335566
Q ss_pred EEEccCCC---EEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Cc
Q 014302 242 LKWSPTGD---YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SL 314 (427)
Q Consensus 242 ~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~ 314 (427)
-+|||-.. ++|+|..|-.|++-|+.++.. ..+.+|...|.++.|+|...+++.+++.++.++.|++..... .+
T Consensus 149 hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l 228 (397)
T KOG4283|consen 149 HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVL 228 (397)
T ss_pred hhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEe
Confidence 66666332 566899999999999999998 556699999999999999999998888999999999887533 22
Q ss_pred cccccccccccc-eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 315 DAHLLPVDLPDI-VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 315 ~~~~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
+.|.. ...+.. ....+.+.|+.++|+.||.+|+++ +.+ ..+++|+...+.-
T Consensus 229 D~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~~--gtd----~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 229 DQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLASC--GTD----DRIRVWNMESGRN 280 (397)
T ss_pred ecccC-ccCccccccccccceeeeeeecccchhhhhc--cCc----cceEEeecccCcc
Confidence 33321 111112 245577799999999999999996 444 3499999987653
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.3e-17 Score=133.06 Aligned_cols=244 Identities=16% Similarity=0.168 Sum_probs=161.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCCcCCeeEEEEccC---CCceEEEecCCeEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~v~~l~~sp~---~~~~la~g~~~~i~iw~~~~ 174 (427)
.|.|.+|+|+|++||+|+.|.+|++.-++..... .-....-|.+.|..++|-.+ +..+|++++.+..+||-.+
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td- 169 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD- 169 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee-
Confidence 8999999999999999999999999777654111 12233458999999999743 4468998888777777655
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
+..| .... .+.+|.+.|.++ ++=+|-.+++|
T Consensus 170 ------c~~g----------------~~~~--------------------------a~sghtghilal-yswn~~m~~sg 200 (350)
T KOG0641|consen 170 ------CGRG----------------QGFH--------------------------ALSGHTGHILAL-YSWNGAMFASG 200 (350)
T ss_pred ------cCCC----------------Ccce--------------------------eecCCcccEEEE-EEecCcEEEcc
Confidence 0011 1111 234456666554 33367889999
Q ss_pred ecCCcEEEEEcCCCCccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302 255 KFDGTFYLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 326 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
+.|.+|+.||++-..+.... -....|.+++..|.|+.|+++-.+. ....+++...... .
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg~r~i------------q 267 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRGGRMI------------Q 267 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeCCcee------------e
Confidence 99999999999988775433 1236789999999999999765444 5555666554211 1
Q ss_pred eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302 327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 406 (427)
Q Consensus 327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~ 406 (427)
....+...|.++.|||...||.++ +-| -.|++-|++.....++. .-.+ +. ...+++.+.|||.. -. ..
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~---syd---~~ikltdlqgdla~el~-~~vv-~e-hkdk~i~~rwh~~d--~s-fi 335 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTC---SYD---MKIKLTDLQGDLAHELP-IMVV-AE-HKDKAIQCRWHPQD--FS-FI 335 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEe---ccc---ceEEEeecccchhhcCc-eEEE-Ee-ccCceEEEEecCcc--ce-ee
Confidence 122345589999999999999885 444 45999999753322221 1122 21 22346778899862 12 23
Q ss_pred EEeeCceEEEEec
Q 014302 407 VCWSSGFCCTYPL 419 (427)
Q Consensus 407 v~~~~g~i~~~~~ 419 (427)
....|-...+|.+
T Consensus 336 sssadkt~tlwa~ 348 (350)
T KOG0641|consen 336 SSSADKTATLWAL 348 (350)
T ss_pred eccCcceEEEecc
Confidence 3336777777754
No 100
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.81 E-value=3.9e-18 Score=148.30 Aligned_cols=247 Identities=15% Similarity=0.235 Sum_probs=170.5
Q ss_pred ceeeeEEcCCCC---EEEEEeCCCeEEEEEccCCCCcc--eeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302 101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~---~lat~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~ 175 (427)
.|.+++|.-..+ .+++++.|.++++|.++.+.... .....+|...|-+++..++|.+++..+.|..+.||+...+
T Consensus 146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 778788754333 69999999999999998873322 2233489999999999999955555556799999994321
Q ss_pred CC-ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-------------cccCceEE--eccCCe
Q 014302 176 GN-AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-------------PGLGTPIR--RGFGGL 239 (427)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-------------l~~~~~~~--~~~~~v 239 (427)
.. ....... ..............-.++..+.+| ..+|.++.|++.+.. +.++.... ......
T Consensus 226 ~~~~~E~~s~-~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl 303 (423)
T KOG0313|consen 226 EEDELESSSN-RRRKKQKREKEGGTRTPLVTLEGH-TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSL 303 (423)
T ss_pred ccccccccch-hhhhhhhhhhcccccCceEEeccc-ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcce
Confidence 11 0000000 000011111122233455667777 999999999985433 11222221 234678
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEcCCCCc----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302 240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 315 (427)
Q Consensus 240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~ 315 (427)
.++..+|..++|++|+.|..+++||.+++.. ..+.+|++.|.++.|+|...++++.++.++++++|++......+
T Consensus 304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl- 382 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL- 382 (423)
T ss_pred eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc-
Confidence 8999999999999999999999999998764 34559999999999999999988888999899999998864211
Q ss_pred ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
.....+...|.++.|+. +.++++ |+.| .+|+|+.-
T Consensus 383 ----------ydI~~h~DKvl~vdW~~-~~~IvS---GGaD---~~l~i~~~ 417 (423)
T KOG0313|consen 383 ----------YDIAGHNDKVLSVDWNE-GGLIVS---GGAD---NKLRIFKG 417 (423)
T ss_pred ----------eeeccCCceEEEEeccC-CceEEe---ccCc---ceEEEecc
Confidence 00111234789999985 567777 8888 56998864
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=161.96 Aligned_cols=221 Identities=14% Similarity=0.180 Sum_probs=176.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc--CCCceEEEecC-CeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCK-GGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~-~~i~iw~~~~~~~ 177 (427)
.|++++.||+|++||+|..-|+++||++... ........|...|.|+.||- -+.++||++++ .-|+|+|+.
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---- 534 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---- 534 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc----
Confidence 7999999999999999999999999999877 45556678999999999983 24468998877 678899996
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC---ccc----------------CceEEec---
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF---PGL----------------GTPIRRG--- 235 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~---l~~----------------~~~~~~~--- 235 (427)
.++.+++.+.+| ...|+++.|-..|-. +.+ +..+..|
T Consensus 535 --------------------rny~l~qtld~H-SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 535 --------------------RNYDLVQTLDGH-SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred --------------------cccchhhhhccc-ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 245677788888 899999999876621 211 2222222
Q ss_pred --cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-c---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 236 --FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-S---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 236 --~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
...++.|+..|..+++++++.|+.|+|||+.+++..+. . .|.+....+...|.|.||++.+++. ++..+++..
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk-tl~~~Df~s 672 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK-TLCFVDFVS 672 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC-ceEEEEecc
Confidence 24688999999999999999999999999999987443 3 6778899999999999999887666 888888887
Q ss_pred CCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 310 KPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 310 ~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
... ...||.. .|+.|.|.+|-+.|++ .+.| |.|.||.+..
T Consensus 673 gEcvA~m~GHsE--------------~VTG~kF~nDCkHlIS---vsgD---gCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 GECVAQMTGHSE--------------AVTGVKFLNDCKHLIS---VSGD---GCIFVWKLPL 714 (1080)
T ss_pred chhhhhhcCcch--------------heeeeeecccchhhee---ecCC---ceEEEEECch
Confidence 532 3334433 7899999999999998 4555 8899999864
No 102
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=3.8e-18 Score=151.69 Aligned_cols=272 Identities=18% Similarity=0.221 Sum_probs=176.3
Q ss_pred ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCC-ceEEEecCCeEEEEeccCC
Q 014302 101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~~~i~iw~~~~~ 175 (427)
.|++++|||..+ .+|+|..-|+|-+||+... ..........|..+|.++.|+|... ++++++.||+|++-|++..
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 899999999875 8889989999999999632 3345566678999999999999754 5677778899999998711
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc------------------cCceEEeccC
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG------------------LGTPIRRGFG 237 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~------------------~~~~~~~~~~ 237 (427)
-... +-.++.. ...+..+.|+.+...+. ....++.|..
T Consensus 268 i~e~-----------------------v~s~~~d-~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 268 ISEE-----------------------VLSLDTD-NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred hhHH-----------------------HhhcCcc-ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 0000 0000000 11112222222211100 1123556788
Q ss_pred CeEEEEEccCCCE-EEEEecCCcEEEEEcCCCCccc--c---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC---
Q 014302 238 GLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP--W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA--- 308 (427)
Q Consensus 238 ~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~--~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~--- 308 (427)
.|.+++++|...+ |++++.|++.+|||++...... + ..|...|.++.|||.|-.|++++.++ .|++|+..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~s 402 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCIS 402 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC-ceEEeeccccc
Confidence 9999999998875 5599999999999999866533 2 28999999999999888888765555 78777763
Q ss_pred CC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCC
Q 014302 309 SK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 386 (427)
Q Consensus 309 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~ 386 (427)
.+ ....-.|. ......-......|.|+..++++ |.-- ..|-|+|-+.++.+.- +..+..
T Consensus 403 a~~~p~~~I~Hn--------~~t~RwlT~fKA~W~P~~~li~v---g~~~---r~IDv~~~~~~q~v~e-----l~~P~~ 463 (498)
T KOG4328|consen 403 AKDEPLGTIPHN--------NRTGRWLTPFKAAWDPDYNLIVV---GRYP---RPIDVFDGNGGQMVCE-----LHDPES 463 (498)
T ss_pred ccCCccceeecc--------CcccccccchhheeCCCccEEEE---eccC---cceeEEcCCCCEEeee-----ccCccc
Confidence 11 10000000 00000013456689999999988 4433 4499999988875411 112322
Q ss_pred CCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 387 ~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
..-+.-..|||. ...++|-+.+.|.|++|.
T Consensus 464 ~tI~~vn~~HP~--~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 464 STIPSVNEFHPM--RDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccceeeccc--ccceeccCCccceEEEEe
Confidence 222335679996 233788888899999875
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=4.9e-17 Score=154.47 Aligned_cols=296 Identities=18% Similarity=0.217 Sum_probs=193.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCC-cCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC-
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN- 177 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~- 177 (427)
.|+++.=+|-=..+|.|..+|+|.|+++..+ +. .....| .+.|++++|.-||..++|+|+. |.+.+||++...-
T Consensus 204 ~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--ki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 204 RITAIEQSPALDVVAIGLENGTVIIFNLKFD--KI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred ceeEeccCCcceEEEEeccCceEEEEEcccC--cE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 7899998998899999999999999999877 33 334455 4899999999999999999988 7799999973211
Q ss_pred --ccccc------------------cCcccccccccCC-CCcceeEeehhcccCCCceeeeEeC-CCCCCcc--------
Q 014302 178 --AASVR------------------SGAASFLGALSRG-PGTRWTLVDFLRSQNGEQITALSWG-PDGRFPG-------- 227 (427)
Q Consensus 178 --~~~~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~-------- 227 (427)
..+.. .++-++.....-+ +.+....++ .+.++..+..++.|. ..|..+.
T Consensus 281 ~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 281 NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee-eccCCCCCchheeeeccCcEEEEecccCcch
Confidence 11111 1111111111011 111112222 222335666666654 2222200
Q ss_pred --------------------------------------------------------------------------cCc---
Q 014302 228 --------------------------------------------------------------------------LGT--- 230 (427)
Q Consensus 228 --------------------------------------------------------------------------~~~--- 230 (427)
.|.
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 000
Q ss_pred ---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-cc---ccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302 231 ---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW---SSTSGFVTGATWDPEGRMILLAFAGSLTLG 303 (427)
Q Consensus 231 ---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~ 303 (427)
.++.....+++++.+++|++.+.|...|.|.+|+++++-.. .+ ..|+..|++++...-++.+++++.++ .+.
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G-ilk 518 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG-ILK 518 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc-eEE
Confidence 01112256889999999999999999999999999998763 33 38999999999988888888765544 777
Q ss_pred eeeeCCCCC--Cc--c-------ccc----ccc----------cccc---ceee-ccCCceeEEEECCCCCEEEEEEecC
Q 014302 304 SIHFASKPP--SL--D-------AHL----LPV----------DLPD---IVSL-TGSQGIEKIAWDASGERLAVSYKGG 354 (427)
Q Consensus 304 ~~~~~~~~~--~~--~-------~~~----~~~----------~~~~---~~~~-~~~~~i~~v~~sp~g~~La~~~~~~ 354 (427)
.|++..+.. .+ . -|. ..+ +... ...+ .+++.|++++|||||+||++ ++
T Consensus 519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis---as 595 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS---AS 595 (910)
T ss_pred EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE---ee
Confidence 777776421 00 0 000 000 0000 0111 36679999999999999999 45
Q ss_pred CCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeC-ceEEEEe
Q 014302 355 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS-GFCCTYP 418 (427)
Q Consensus 355 ~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~-g~i~~~~ 418 (427)
.| ++|++||+.++.++... ..+..+..++|.|+ |..||+.-.+ --|++|.
T Consensus 596 mD---~tIr~wDlpt~~lID~~--------~vd~~~~sls~SPn---gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 596 MD---STIRTWDLPTGTLIDGL--------LVDSPCTSLSFSPN---GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cC---CcEEEEeccCcceeeeE--------ecCCcceeeEECCC---CCEEEEEEecCceEEEEE
Confidence 55 66999999998876332 12222567889997 8888888777 4677775
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=163.16 Aligned_cols=203 Identities=17% Similarity=0.274 Sum_probs=150.9
Q ss_pred ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~ 177 (427)
....+.|+. +.++|||++.+|.|.+||+..... +....+..|...|.++.|++...++|.+|+. +.|++||+....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~- 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK- 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-
Confidence 566788874 456999999999999999988522 3445667799999999999998899888876 999999997110
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC-CCEEEEEec
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT-GDYFFAAKF 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~ 256 (427)
... .++.....|+.++|+|. +..++++.+
T Consensus 168 ------------------------S~~--------------------------t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 168 ------------------------SKS--------------------------TFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ------------------------ccc--------------------------cccccchhhhceeeccCCCceEEEecC
Confidence 011 12223446777888874 557779999
Q ss_pred CCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302 257 DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 257 dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
.|.+++||+|.... .++..|.++|.++.|+|++.+||+|+ .|+++++|++.+..... ...+....+
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~-----------~~tInTiap 265 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP-----------KHTINTIAP 265 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc-----------eeEEeecce
Confidence 99999999998775 45669999999999999999999876 66688888887642211 111122348
Q ss_pred eeEEEECCCCCE-EEEEEecCCCcceeEEEEEEeccC
Q 014302 335 IEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 335 i~~v~~sp~g~~-La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
|..|.|-|..++ ||+|+...+ ..|+|||++..
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~d----tsV~VWDvrRP 298 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVD----TSVHVWDVRRP 298 (839)
T ss_pred eeeeeeccCccchhhhhhcccc----ceEEEEeeccc
Confidence 899999998765 666655544 56999999763
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=5.8e-17 Score=148.41 Aligned_cols=227 Identities=12% Similarity=0.145 Sum_probs=148.0
Q ss_pred ceeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~ 178 (427)
.+.+++|+|+|+.+ ++++.++.|++||.... ........+ ..+..++|+|+++.+++++. ++.+.+||+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---- 104 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIET---- 104 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC----
Confidence 46789999999976 56678899999998876 222222223 33577899999965555554 58899999971
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce---------------EE--eccCCeEE
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP---------------IR--RGFGGLSI 241 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---------------~~--~~~~~v~~ 241 (427)
. ..+..+.. ...+..++|+|+|+++..+.. .. ........
T Consensus 105 -----~----------------~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (300)
T TIGR03866 105 -----R----------------KVLAEIPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRF 161 (300)
T ss_pred -----C----------------eEEeEeeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccE
Confidence 1 12222221 223567888888877442210 00 01234567
Q ss_pred EEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-c-------CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302 242 LKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-S-------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 312 (427)
Q Consensus 242 ~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~-------~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~ 312 (427)
++|+|+|++|+ ++..++.|++||+++++..... . .......++|+|+|++++++...+..+.+|++.+...
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 88999999887 4456899999999987653221 1 1112356889999998776655555677776644311
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
......+..+.+++|+|+|++|+++ ...+ +.|.+||+++++++..
T Consensus 242 -------------~~~~~~~~~~~~~~~~~~g~~l~~~--~~~~---~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 242 -------------LDYLLVGQRVWQLAFTPDEKYLLTT--NGVS---NDVSVIDVAALKVIKS 286 (300)
T ss_pred -------------EEEEEeCCCcceEEECCCCCEEEEE--cCCC---CeEEEEECCCCcEEEE
Confidence 0111223468899999999999874 2333 6699999999887643
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=9.4e-19 Score=149.13 Aligned_cols=211 Identities=17% Similarity=0.237 Sum_probs=146.2
Q ss_pred eeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCcee
Q 014302 137 ILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 215 (427)
Q Consensus 137 ~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 215 (427)
.++++....+.|..||||| ++|++|+ ||-|.+|+.. +| +...-++..
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~---------~G----------------KlrKDLkYQ------ 254 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYT---------TG----------------KLRKDLKYQ------ 254 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhc---------cc----------------hhhhhhhhh------
Confidence 3455666778999999999 6666665 5889999986 22 111111111
Q ss_pred eeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccc-cCCCCeeEEEECCCCCEEE
Q 014302 216 ALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMIL 293 (427)
Q Consensus 216 ~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~v~~spdg~~l~ 293 (427)
. ...+--+..+|.|+.||.|...||+|+.||.|++|.++++.|. .+. .|...|+++.||.|++.++
T Consensus 255 -----A-------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL 322 (508)
T KOG0275|consen 255 -----A-------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL 322 (508)
T ss_pred -----h-------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh
Confidence 0 1123336788999999999999999999999999999999994 444 8999999999999999999
Q ss_pred EEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 294 LAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 294 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
+++.+. ++++--+.+.+ ..+.||.. -|+...|++||.++++ ++.| |+|+||+.++.+
T Consensus 323 S~sfD~-tvRiHGlKSGK~LKEfrGHsS--------------yvn~a~ft~dG~~iis---aSsD---gtvkvW~~Ktte 381 (508)
T KOG0275|consen 323 SASFDQ-TVRIHGLKSGKCLKEFRGHSS--------------YVNEATFTDDGHHIIS---ASSD---GTVKVWHGKTTE 381 (508)
T ss_pred cccccc-eEEEeccccchhHHHhcCccc--------------cccceEEcCCCCeEEE---ecCC---ccEEEecCcchh
Confidence 876444 33333333321 14445544 6799999999999999 4555 779999999988
Q ss_pred eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 372 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
++. .+...+.+.....+-..|+. ..-+.||.-+..+.+..+
T Consensus 382 C~~-----Tfk~~~~d~~vnsv~~~PKn--peh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 382 CLS-----TFKPLGTDYPVNSVILLPKN--PEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred hhh-----hccCCCCcccceeEEEcCCC--CceEEEEcCCCeEEEEec
Confidence 863 22222233334455556652 445667766666665543
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.1e-18 Score=138.93 Aligned_cols=245 Identities=16% Similarity=0.243 Sum_probs=167.3
Q ss_pred eeeeEEcCCC-CEEEEE-------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce-EEEecCCeEEEEec
Q 014302 102 LQGVSWHQHK-HIVAFI-------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAP 172 (427)
Q Consensus 102 V~~l~~sp~g-~~lat~-------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~-la~g~~~~i~iw~~ 172 (427)
=.++.|||-- ++||++ ..+|++.|-++.............-.+.+.+++|++....+ +++.+||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 3678899954 355554 34688888877644222223333456789999999976555 55557899999997
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EE
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YF 251 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l 251 (427)
..+. .++.. ++.|...|.++.|++..+ .+
T Consensus 91 ~~~s------------------------~Pi~~--------------------------~kEH~~EV~Svdwn~~~r~~~ 120 (311)
T KOG0277|consen 91 TMPS------------------------KPIHK--------------------------FKEHKREVYSVDWNTVRRRIF 120 (311)
T ss_pred CCCC------------------------cchhH--------------------------HHhhhhheEEeccccccceeE
Confidence 6211 12332 334567788888887555 45
Q ss_pred EEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCcccccccccccccee
Q 014302 252 FAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVS 328 (427)
Q Consensus 252 ~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~ 328 (427)
++++.|++|++|+....+. .++.+|...|...+|+|.-..++...+.++.+++|++... ...+..
T Consensus 121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a------------ 188 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA------------ 188 (311)
T ss_pred EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe------------
Confidence 5889999999999876665 5667999999999999976655555677778888887653 111222
Q ss_pred eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302 329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 408 (427)
Q Consensus 329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~ 408 (427)
+...|.++.|+.-...++++ ++.| +.|++||++.... |...+.+.+-. .-.+.|.|. .-.+||.+
T Consensus 189 --h~~Eil~cdw~ky~~~vl~T--g~vd---~~vr~wDir~~r~----pl~eL~gh~~A--VRkvk~Sph--~~~lLaSa 253 (311)
T KOG0277|consen 189 --HNSEILCCDWSKYNHNVLAT--GGVD---NLVRGWDIRNLRT----PLFELNGHGLA--VRKVKFSPH--HASLLASA 253 (311)
T ss_pred --ccceeEeecccccCCcEEEe--cCCC---ceEEEEehhhccc----cceeecCCceE--EEEEecCcc--hhhHhhhc
Confidence 22388999999655554444 7777 6799999987552 23344444444 336778775 35689988
Q ss_pred eeCceEEEEeccccC
Q 014302 409 WSSGFCCTYPLIFRS 423 (427)
Q Consensus 409 ~~~g~i~~~~~~~~~ 423 (427)
.=|=++.+|++.-.+
T Consensus 254 sYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 254 SYDMTVRIWDPERQD 268 (311)
T ss_pred cccceEEecccccch
Confidence 888889999876443
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-17 Score=155.07 Aligned_cols=239 Identities=17% Similarity=0.260 Sum_probs=171.4
Q ss_pred CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN 177 (427)
Q Consensus 99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~ 177 (427)
+...+-++|+ ..+.||+|. ...|.+|+-..+ ....+...+...|+++.|+++| .+||+|.. +.|.|||..
T Consensus 177 DfY~nlldWs-s~n~laVal-g~~vylW~~~s~--~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~---- 247 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVAL-GQSVYLWSASSG--SVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVK---- 247 (484)
T ss_pred cHhhhHhhcc-cCCeEEEEe-cceEEEEecCCC--ceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehh----
Confidence 3356678899 556777774 558899998877 3344444447899999999999 78888865 999999987
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
+.+.+..+..+ |...|.+++|. +..+.+|+.+
T Consensus 248 ---------------------~~k~~~~~~~~-------------------------h~~rvg~laW~--~~~lssGsr~ 279 (484)
T KOG0305|consen 248 ---------------------EQKKTRTLRGS-------------------------HASRVGSLAWN--SSVLSSGSRD 279 (484)
T ss_pred ---------------------hccccccccCC-------------------------cCceeEEEecc--CceEEEecCC
Confidence 11222222221 56678888887 5677799999
Q ss_pred CcEEEEEcCCCCcc-c-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302 258 GTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 335 (427)
Q Consensus 258 g~v~iwd~~~~~~~-~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 335 (427)
+.|..+|++..+.. . ...|...|..+.|++|++++|+++.+. .+.+|+.....+ ......|.+.|
T Consensus 280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p------------~~~~~~H~aAV 346 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEP------------KFTFTEHTAAV 346 (484)
T ss_pred CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-ceEeccCCCccc------------cEEEeccceee
Confidence 99999999988762 3 458999999999999999999875554 666666633221 12334455689
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEE
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 415 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~ 415 (427)
.+++|+|--.-|+++..|+.| ++|++||..++..+..... ......+.|.+.+. .-+.+.|+++..|.
T Consensus 347 KA~awcP~q~~lLAsGGGs~D---~~i~fwn~~~g~~i~~vdt--------gsQVcsL~Wsk~~k-Ei~sthG~s~n~i~ 414 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSAD---RCIKFWNTNTGARIDSVDT--------GSQVCSLIWSKKYK-ELLSTHGYSENQIT 414 (484)
T ss_pred eEeeeCCCccCceEEcCCCcc---cEEEEEEcCCCcEeccccc--------CCceeeEEEcCCCC-EEEEecCCCCCcEE
Confidence 999999865544444556667 7899999998887633211 11244678888742 45788999999999
Q ss_pred EEec
Q 014302 416 TYPL 419 (427)
Q Consensus 416 ~~~~ 419 (427)
+|..
T Consensus 415 lw~~ 418 (484)
T KOG0305|consen 415 LWKY 418 (484)
T ss_pred EEec
Confidence 9975
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=4.6e-18 Score=152.77 Aligned_cols=241 Identities=13% Similarity=0.200 Sum_probs=175.8
Q ss_pred CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
+.-|+++.++|||+.|++|+.-.++.|||+.............-.-.+.+++.|||.+-.+++..+|.|.|||+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh----- 539 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----- 539 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----
Confidence 337899999999999999999999999999887322222222223457899999999667777788999999998
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
....++. +.+|..++.|+.+++||..|-+|+-|.
T Consensus 540 --------------------nq~~Vrq--------------------------fqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 540 --------------------NQTLVRQ--------------------------FQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred --------------------cceeeec--------------------------ccCCCCCceeEEecCCCceeecCCCcc
Confidence 2233333 445678899999999999999999999
Q ss_pred cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302 259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI 338 (427)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 338 (427)
+||-||++.+...........|.++-.+|++.+|+++-.+. .+.+.+.... ..+.-| .+..-|.++
T Consensus 574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens-~vevlh~skp-~kyqlh------------lheScVLSl 639 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS-NVEVLHTSKP-EKYQLH------------LHESCVLSL 639 (705)
T ss_pred ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC-cEEEEecCCc-cceeec------------ccccEEEEE
Confidence 99999999988766667788999999999999999876555 5555544442 111111 122368999
Q ss_pred EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
.|.+.|+|++++ +-| ..+..|.+.-+..+ ++.. +...++++...-+ ..++..|..+-+..+|.
T Consensus 640 KFa~cGkwfvSt---GkD---nlLnawrtPyGasi-------Fqsk-E~SsVlsCDIS~d---dkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 640 KFAYCGKWFVST---GKD---NLLNAWRTPYGASI-------FQSK-ESSSVLSCDISFD---DKYIVTGSGDKKATVYE 702 (705)
T ss_pred EecccCceeeec---Cch---hhhhhccCccccce-------eecc-ccCcceeeeeccC---ceEEEecCCCcceEEEE
Confidence 999999999995 344 34889998776643 2222 2222445544332 45677787787899998
Q ss_pred ccc
Q 014302 419 LIF 421 (427)
Q Consensus 419 ~~~ 421 (427)
+.|
T Consensus 703 V~Y 705 (705)
T KOG0639|consen 703 VIY 705 (705)
T ss_pred EeC
Confidence 876
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=6e-16 Score=141.64 Aligned_cols=256 Identities=12% Similarity=0.086 Sum_probs=160.9
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCccccc
Q 014302 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL 189 (427)
Q Consensus 111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~ 189 (427)
+..+++++.|+.+++||+.+. ........+ ..+.+++|+|++..+++++. ++.+.+|+.. ++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~---------~~----- 63 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLA---------TG----- 63 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC--ceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECC---------CC-----
Confidence 356888999999999998776 333333333 34788999999965556554 5889999987 11
Q ss_pred ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc---------------CceEEe--ccCCeEEEEEccCCCEEE
Q 014302 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL---------------GTPIRR--GFGGLSILKWSPTGDYFF 252 (427)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~---------------~~~~~~--~~~~v~~~~~sp~g~~l~ 252 (427)
.....+.. ...+..++|+|+|+.+.. ...+.. ....+..++|+|+|++++
T Consensus 64 -----------~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 64 -----------EVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVV 130 (300)
T ss_pred -----------cEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEE
Confidence 11111221 122356778887774321 011111 123467889999999999
Q ss_pred EEecCC-cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccccccceee
Q 014302 253 AAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 253 ~~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 329 (427)
++..++ .+.+||.++.+.............++|+|+|++|++++..++.+.+|++..... .+..+.. . ..
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-----~--~~ 203 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-----G--VH 203 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-----c--cc
Confidence 877665 467789887665333223345678999999999987766667888888876421 1110000 0 00
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 409 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~ 409 (427)
........++|+|++++++++..+ + +.|.+||+++++....... +. .+.+++|.|+ |..|.++.
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~~--~---~~i~v~d~~~~~~~~~~~~------~~--~~~~~~~~~~---g~~l~~~~ 267 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALGP--A---NRVAVVDAKTYEVLDYLLV------GQ--RVWQLAFTPD---EKYLLTTN 267 (300)
T ss_pred cccCCccceEECCCCCEEEEEcCC--C---CeEEEEECCCCcEEEEEEe------CC--CcceEEECCC---CCEEEEEc
Confidence 011134568899999987664322 2 3599999988776533211 11 3568899986 66676654
Q ss_pred -eCceEEEEec
Q 014302 410 -SSGFCCTYPL 419 (427)
Q Consensus 410 -~~g~i~~~~~ 419 (427)
.+|.|.+|++
T Consensus 268 ~~~~~i~v~d~ 278 (300)
T TIGR03866 268 GVSNDVSVIDV 278 (300)
T ss_pred CCCCeEEEEEC
Confidence 5899999985
No 111
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.7e-18 Score=166.84 Aligned_cols=248 Identities=15% Similarity=0.221 Sum_probs=171.5
Q ss_pred CceeeeEEcCCCCE----EEEEeCCCeEEEEEccCC----CCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEE
Q 014302 100 VDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIW 170 (427)
Q Consensus 100 ~~V~~l~~sp~g~~----lat~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw 170 (427)
...+.++|.+.|.. ||.|..||.|.+||...- ..........|.+.|..+.|++....+||+|.+ +.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 36789999998875 899999999999998762 222334455699999999999999889999976 999999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD- 249 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~- 249 (427)
|++++..+.... -......|.+++|+..-.
T Consensus 145 Dlnn~~tP~~~~-------------------------------------------------~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 145 DLNKPETPFTPG-------------------------------------------------SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred ccCCcCCCCCCC-------------------------------------------------CCCCcccceEeccchhhhH
Confidence 998321110000 000124677888876554
Q ss_pred EEEEEecCCcEEEEEcCCCCcc-ccc--cCCCCeeEEEECCCCCE-EEEEEcCCc--eeeeeeeCCC---CCCccccccc
Q 014302 250 YFFAAKFDGTFYLWETNTWTSE-PWS--STSGFVTGATWDPEGRM-ILLAFAGSL--TLGSIHFASK---PPSLDAHLLP 320 (427)
Q Consensus 250 ~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~~~v~~v~~spdg~~-l~~~~~~~~--~i~~~~~~~~---~~~~~~~~~~ 320 (427)
.|++++.+|.+.|||++..+.. .+. .....+..+.|+|++.. |++++.++. .|..|++... ...+++|..
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~- 254 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR- 254 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-
Confidence 4558889999999999988653 232 23345889999998754 444444442 4444444332 123344544
Q ss_pred cccccceeeccCCceeEEEECCCC-CEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 399 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g-~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 399 (427)
.|.+|.|++.+ ++|++| +.| +.|.+|+.++++.+.-.|.+ +. -...+.|.|.
T Consensus 255 -------------GilslsWc~~D~~lllSs---gkD---~~ii~wN~~tgEvl~~~p~~-----~n--W~fdv~w~pr- 307 (1049)
T KOG0307|consen 255 -------------GILSLSWCPQDPRLLLSS---GKD---NRIICWNPNTGEVLGELPAQ-----GN--WCFDVQWCPR- 307 (1049)
T ss_pred -------------ceeeeccCCCCchhhhcc---cCC---CCeeEecCCCceEeeecCCC-----Cc--ceeeeeecCC-
Confidence 89999999776 667664 444 55999999999887433321 11 1336778887
Q ss_pred CCCceeEEEeeCceEEEEeccccCCC
Q 014302 400 KQGPLLSVCWSSGFCCTYPLIFRSHL 425 (427)
Q Consensus 400 ~~g~~l~v~~~~g~i~~~~~~~~~~~ 425 (427)
.-.++++.+-+|+|.+|.+.=.++.
T Consensus 308 -~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 308 -NPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred -CcchhhhheeccceeeeeeecCCcc
Confidence 3458999999999999998766544
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=5.3e-17 Score=138.17 Aligned_cols=273 Identities=15% Similarity=0.186 Sum_probs=179.3
Q ss_pred CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
.+.+| .|..++-....+.+.+++.|.+.+||.++.+ .+...+.+|.+.|+++.|++.+..++..++|++.+||...
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 34455 6777777777779999999999999999998 6778888999999999999998444444567889999743
Q ss_pred ----CCCCc-cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cCceEEeccCCeEEEEEccC
Q 014302 174 ----YPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LGTPIRRGFGGLSILKWSPT 247 (427)
Q Consensus 174 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~~~~~~~~v~~~~~sp~ 247 (427)
.|.+. .....+ ..+.... + ...+-+.-.-..||..+. .-..+.+|.+.|.+..|-..
T Consensus 221 v~~~vP~~~a~~~hSs------------EeE~e~s---D--e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSS------------EEEEEHS---D--EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred hcCcCCCCCCCCCCCc------------hhhhhcc---c--ccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 11110 000000 0000000 0 011111111112222211 11235568888999999999
Q ss_pred CCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Ccccccccccc
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAHLLPVDL 323 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~ 323 (427)
|+.+++++.|.+-.+||++++... .+.+|....+.++-+|..+.+++ ++.+.+.+.|++..... .+.||..
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT-sSrDtTFRLWDFReaI~sV~VFQGHtd---- 358 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT-SSRDTTFRLWDFREAIQSVAVFQGHTD---- 358 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE-eccCceeEeccchhhcceeeeeccccc----
Confidence 999999999999999999999984 45599999999999998776665 56666777777775321 3344444
Q ss_pred ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc
Q 014302 324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP 403 (427)
Q Consensus 324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~ 403 (427)
.|+++.|..+.+ +++ |++| .+|+|||+++... |...|+- ... ...++... .+.
T Consensus 359 ----------tVTS~vF~~dd~-vVS---gSDD---rTvKvWdLrNMRs----plATIRt-dS~--~NRvavs~---g~~ 411 (481)
T KOG0300|consen 359 ----------TVTSVVFNTDDR-VVS---GSDD---RTVKVWDLRNMRS----PLATIRT-DSP--ANRVAVSK---GHP 411 (481)
T ss_pred ----------ceeEEEEecCCc-eee---cCCC---ceEEEeeeccccC----cceeeec-CCc--cceeEeec---CCc
Confidence 789999997654 545 7777 6799999987543 2223332 111 22333322 356
Q ss_pred eeEEEeeCceEEEEec
Q 014302 404 LLSVCWSSGFCCTYPL 419 (427)
Q Consensus 404 ~l~v~~~~g~i~~~~~ 419 (427)
++++--.+-+|.+|+|
T Consensus 412 iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDL 427 (481)
T ss_pred eEEeccCCceEEEEec
Confidence 7888877888888876
No 113
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1.5e-16 Score=135.92 Aligned_cols=261 Identities=18% Similarity=0.225 Sum_probs=171.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCC---CC--------cceeeccCCcCCeeEEEEc-------cCCCceEEEec
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS---GK--------DACILTSDSQRDVKVLEWR-------PNGGRSLSVGC 163 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~---~~--------~~~~~~~~~~~~v~~l~~s-------p~~~~~la~g~ 163 (427)
...+.|+|||..|++-+.|..+++|++... .. ............|....|- |+. .++++++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-ceeeecc
Confidence 456899999999999999999999998654 11 1122222345678888887 555 4555554
Q ss_pred -CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------
Q 014302 164 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP----------- 231 (427)
Q Consensus 164 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------- 231 (427)
+.-|++||.-.+....+. ...+..+ ....-.+++|+|||..+..|-.
T Consensus 131 r~~PIh~wdaftG~lraSy-------------------~~ydh~d--e~taAhsL~Fs~DGeqlfaGykrcirvFdt~Rp 189 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASY-------------------RAYDHQD--EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRP 189 (406)
T ss_pred ccCceeeeeccccccccch-------------------hhhhhHH--hhhhheeEEecCCCCeEeecccceEEEeeccCC
Confidence 488999998611111000 0011000 1223358999999998654411
Q ss_pred ----------EE---eccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEE
Q 014302 232 ----------IR---RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAF 296 (427)
Q Consensus 232 ----------~~---~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~ 296 (427)
.+ +..+-+.+++|+|-.. .++.++....+-||.-.......+. +|.+.|+.++|.++|+.|++++
T Consensus 190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc
Confidence 00 0134577899999665 7889999999999987776664444 8999999999999999999998
Q ss_pred cCCceeeeeeeCCCCC---CccccccccccccceeeccCCceeEEEE--CCCCCEEEEEEecCCCcceeEEEEEEecc-C
Q 014302 297 AGSLTLGSIHFASKPP---SLDAHLLPVDLPDIVSLTGSQGIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARR-T 370 (427)
Q Consensus 297 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~v~~--sp~g~~La~~~~~~~d~~~g~i~vwd~~~-~ 370 (427)
..+..|-.|++..... .+..|... .-..+-| .|+|++||+ |+.+ |.|++||++. +
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~-------------TNQRI~FDld~~~~~Las---G~td---G~V~vwdlk~~g 330 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGD-------------TNQRILFDLDPKGEILAS---GDTD---GSVRVWDLKDLG 330 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccC-------------ccceEEEecCCCCceeec---cCCC---ccEEEEecCCCC
Confidence 8888999999887422 23333220 1133444 599999999 7777 7799999987 4
Q ss_pred ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302 371 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 414 (427)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i 414 (427)
..+.+.+ ...+. ...++++|. -.+||++ +..+|
T Consensus 331 n~~sv~~-----~~sd~--vNgvslnP~---mpilats-sGqr~ 363 (406)
T KOG2919|consen 331 NEVSVTG-----NYSDT--VNGVSLNPI---MPILATS-SGQRI 363 (406)
T ss_pred Ccccccc-----ccccc--ccceecCcc---cceeeec-cCcee
Confidence 4232111 11222 346788886 5567666 33443
No 114
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.77 E-value=1.4e-16 Score=153.20 Aligned_cols=231 Identities=17% Similarity=0.203 Sum_probs=167.5
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPS 173 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~ 173 (427)
+.+| .|.++++..-+..|++|+.|.+++|||+.++ .......+|...|.++...+ .++++| .|.+|++|+++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEecc
Confidence 4455 8999999887889999999999999998887 67777789999999987653 344444 66999999997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~ 253 (427)
.+ .++. .+++|.+.|.++..+ +.++++
T Consensus 320 ---------n~----------------~~l~--------------------------l~~~h~~~V~~v~~~--~~~lvs 346 (537)
T KOG0274|consen 320 ---------NG----------------ACLN--------------------------LLRGHTGPVNCVQLD--EPLLVS 346 (537)
T ss_pred ---------Cc----------------ceEE--------------------------EeccccccEEEEEec--CCEEEE
Confidence 11 2222 233467788898887 889999
Q ss_pred EecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CC--Cccccccccccccceee
Q 014302 254 AKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PP--SLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~~~~~~~ 329 (427)
|+.|++|++||+.++++. ...+|...|.++.+... .+++.++-+ +.|++|++..+ .. .+.+|..
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-~~IkvWdl~~~~~c~~tl~~h~~---------- 414 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-TTIKVWDLRTKRKCIHTLQGHTS---------- 414 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec-cceEeecCCchhhhhhhhcCCcc----------
Confidence 999999999999999884 44599999999988765 777766544 58888888876 22 3334433
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 409 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~ 409 (427)
-+..+ ...+++|++ ++.| ++|++||.+.++++.... +. .......+++. ...+.++.
T Consensus 415 ----~v~~l--~~~~~~Lvs---~~aD---~~Ik~WD~~~~~~~~~~~-----~~-~~~~v~~l~~~-----~~~il~s~ 471 (537)
T KOG0274|consen 415 ----LVSSL--LLRDNFLVS---SSAD---GTIKLWDAEEGECLRTLE-----GR-HVGGVSALALG-----KEEILCSS 471 (537)
T ss_pred ----ccccc--ccccceeEe---cccc---ccEEEeecccCceeeeec-----cC-CcccEEEeecC-----cceEEEEe
Confidence 23333 345778888 5666 679999999998874432 21 11112233232 24577777
Q ss_pred eCceEEEEecc
Q 014302 410 SSGFCCTYPLI 420 (427)
Q Consensus 410 ~~g~i~~~~~~ 420 (427)
.+|.+.+|++.
T Consensus 472 ~~~~~~l~dl~ 482 (537)
T KOG0274|consen 472 DDGSVKLWDLR 482 (537)
T ss_pred cCCeeEEEecc
Confidence 99999999753
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.76 E-value=1.5e-17 Score=141.15 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=163.7
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
|-+| +|+++.|||....|++|+.|++|+++|+....-+..........+|.+++|+|.| .+|++|.+ ..+++||++
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEecc
Confidence 4455 8999999999999999999999999999876322222233445689999999999 56666665 899999998
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------E-Eec
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------I-RRG 235 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~-~~~ 235 (427)
+- +......-...+...|+++.+++.|++-.+++. + +.|
T Consensus 247 ---------T~--------------QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH 303 (430)
T KOG0640|consen 247 ---------TY--------------QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH 303 (430)
T ss_pred ---------ce--------------eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc
Confidence 11 222222233345788999999999987443321 1 124
Q ss_pred c-CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302 236 F-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 236 ~-~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~ 308 (427)
. ..|.+..|..+|+++++++.|..|++|.+.++.+.. +. +....-+...|+....++++-....+.+..|+..
T Consensus 304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 3 568888999999999999999999999999988743 33 1222334566888888888766666677777766
Q ss_pred CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
+... .....+.|.+.+..+.-||.+.-+.+ ++.| ..+++|--+
T Consensus 384 tadr-----------~~l~slgHn~a~R~i~HSP~~p~FmT---csdD---~raRFWyrr 426 (430)
T KOG0640|consen 384 TADR-----------VALLSLGHNGAVRWIVHSPVEPAFMT---CSDD---FRARFWYRR 426 (430)
T ss_pred chhh-----------hhhcccCCCCCceEEEeCCCCCceee---eccc---ceeeeeeec
Confidence 5310 01223345568899999999999988 4555 459999653
No 116
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=147.99 Aligned_cols=266 Identities=15% Similarity=0.269 Sum_probs=178.9
Q ss_pred CCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccC
Q 014302 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY 174 (427)
Q Consensus 96 ~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~ 174 (427)
....|.|+.++|-|||..|+.+. +..+.|||.+.+ .......+|.+.|++++|+.|| ..+|+| .|..|.+|.-..
T Consensus 9 ~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 9 DKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred cccccchheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccc
Confidence 34556899999999999877774 557789998887 4556668999999999999999 666666 558899998752
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------EE--eccCCeE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------IR--RGFGGLS 240 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------~~--~~~~~v~ 240 (427)
-..++..+...|.|+.|+|-...+++... .. .....+.
T Consensus 85 ----------------------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~ 136 (1081)
T KOG1538|consen 85 ----------------------------EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII 136 (1081)
T ss_pred ----------------------------cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence 22355556888999999998777665432 11 1235678
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCC-----EEEEEEcCCceeeeeeeCCCCC
Q 014302 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGR-----MILLAFAGSLTLGSIHFASKPP 312 (427)
Q Consensus 241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~-----~l~~~~~~~~~i~~~~~~~~~~ 312 (427)
+.+|..||++|+.|-.+|+|.|-+-......... +...+|.+++|+|... .+++...+. ++....+..
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-TLSFy~LsG--- 212 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-TLSFYQLSG--- 212 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc-eeEEEEecc---
Confidence 8999999999999999999988754322222222 5778999999999642 222221111 111111111
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 392 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
...- ..-...-...++.+-++|.|+.+ |+.| +.+.+|.-+.-. + |.+- . .+.=...
T Consensus 213 ----~~Ig------k~r~L~FdP~CisYf~NGEy~Li---GGsd---k~L~~fTR~Gvr-L-----GTvg-~-~D~WIWt 268 (1081)
T KOG1538|consen 213 ----KQIG------KDRALNFDPCCISYFTNGEYILL---GGSD---KQLSLFTRDGVR-L-----GTVG-E-QDSWIWT 268 (1081)
T ss_pred ----eeec------ccccCCCCchhheeccCCcEEEE---ccCC---CceEEEeecCeE-E-----eecc-c-cceeEEE
Confidence 1110 00001125578888999999999 6766 568888654321 1 2211 1 1222335
Q ss_pred EEeccCCCCCceeEEEeeCceEEEEeccccCC
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 424 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~ 424 (427)
++.+|+ ++..++|+-||+|.-|.+.|++-
T Consensus 269 V~~~PN---sQ~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 269 VQAKPN---SQYVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred EEEccC---CceEEEEEccCeeehhhhHHhHh
Confidence 778897 66799999999999999988763
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.6e-17 Score=156.55 Aligned_cols=187 Identities=15% Similarity=0.236 Sum_probs=139.9
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|+++.||+... +|++|+.||+|++||+... ....+..+....|+++.|+|.....++++.+ |.+++||+..+..
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r- 211 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR- 211 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-
Confidence 899999999876 8889999999999999887 4555556677899999999988789999988 8888999982110
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
+. ..+..|.++|.++.|+|++.+||+|+.|+
T Consensus 212 -----------------------~~--------------------------~k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 212 -----------------------CE--------------------------KKLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred -----------------------HH--------------------------HHhhcccCceEEEeecCCCceeeecCCCc
Confidence 11 12445889999999999999999999999
Q ss_pred cEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEc--CCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302 259 TFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 259 ~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
.|+|||+.+.+.. .......++..|.|-|+.++.+..++ .+..+++|++...-. +......|...
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-----------P~~t~~eH~~~ 311 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-----------PYATFLEHTDS 311 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-----------cceeeeccCcc
Confidence 9999999876653 33367789999999998887654443 334677777766411 11223334446
Q ss_pred eeEEEECC-CCCEEEEE
Q 014302 335 IEKIAWDA-SGERLAVS 350 (427)
Q Consensus 335 i~~v~~sp-~g~~La~~ 350 (427)
++.++|.. |-..|.++
T Consensus 312 vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 312 VTGIAWDSGDRINLWSC 328 (839)
T ss_pred ccceeccCCCceeeEee
Confidence 78888874 44445453
No 118
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=138.02 Aligned_cols=227 Identities=17% Similarity=0.208 Sum_probs=167.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|..+++|+...||.+++.|+.|+.||+... +....+++|-..|.+++..|.-+.++.+|.|.+++|||+.
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR------- 265 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR------- 265 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec-------
Confidence 7899999999999999999999999999988 7778889999999999999998555555567999999998
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCc-------------ccCc---eEEeccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFP-------------GLGT---PIRRGFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l-------------~~~~---~~~~~~~~v~~~~ 243 (427)
+. ..+..+.+| ..+|..+.+.| |++.+ ..|. .+..|...+.+++
T Consensus 266 --tr----------------~~V~~l~GH-~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 266 --TR----------------ASVHVLSGH-TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC 326 (460)
T ss_pred --cc----------------ceEEEecCC-CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence 22 335556776 88888888876 44431 1221 2445778899999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 322 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (427)
.+|....+|+++.| .|+-|++..+.. ..+.+|..-+.+++...||-++ + +++.+.+..|+..+...-..++..+.
T Consensus 327 lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~-~-G~dng~~~fwdwksg~nyQ~~~t~vq- 402 (460)
T KOG0285|consen 327 LHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV-S-GGDNGSIMFWDWKSGHNYQRGQTIVQ- 402 (460)
T ss_pred cCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEE-E-cCCceEEEEEecCcCccccccccccc-
Confidence 99999888888754 589999988776 4456899999999998887544 3 45555777776655421111111111
Q ss_pred cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.-.+.....|.+.+|+..|..|++ +..| ++|++|.-.
T Consensus 403 ---pGSl~sEagI~as~fDktg~rlit---~ead---KtIk~~keD 439 (460)
T KOG0285|consen 403 ---PGSLESEAGIFASCFDKTGSRLIT---GEAD---KTIKMYKED 439 (460)
T ss_pred ---CCccccccceeEEeecccCceEEe---ccCC---cceEEEecc
Confidence 112223347999999999999998 5666 669999754
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=4.7e-16 Score=145.11 Aligned_cols=258 Identities=15% Similarity=0.143 Sum_probs=177.9
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeE-EEEcc-CCCceEEEecCCeEEEEec
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LEWRP-NGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~-l~~sp-~~~~~la~g~~~~i~iw~~ 172 (427)
+.+| +|..++..+. ..+++++.|+++++|+-............+|.+-|.. +++-+ ++.+++..+.|..+.+|..
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 3455 6777776544 4888999999999998765544343445556666655 77765 3324666667788999998
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCceEEeccCC
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGTPIRRGFGG 238 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~~~~~~~~~ 238 (427)
. ...+...+++| ...|.+++...++.++. ....+.+|...
T Consensus 89 ~-------------------------~~~P~~~LkgH-~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~as 142 (745)
T KOG0301|consen 89 S-------------------------QAEPLYTLKGH-KSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTAS 142 (745)
T ss_pred C-------------------------CCCchhhhhcc-ccceeeeecCCcCceEecccccceEEecchhhhcccCCcchh
Confidence 7 33456667777 77788887766666211 11225669999
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCccc
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDA 316 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~ 316 (427)
|++++.-|.+ .+++|+.|++|++|.- ++. ..+.+|...|..+++-+++.+| + +++++.|+.|++... ...+.+
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-S-csNDg~Ir~w~~~ge~l~~~~g 217 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-S-CSNDGSIRLWDLDGEVLLEMHG 217 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-e-ecCCceEEEEeccCceeeeeec
Confidence 9999988888 7889999999999975 333 5566999999999999977665 3 466778888888554 224445
Q ss_pred cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302 317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 396 (427)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 396 (427)
|.. -|.+++...++..+++ .++| +++++|+.. .+.+. +.-|... ..++.+.
T Consensus 218 htn--------------~vYsis~~~~~~~Ivs---~gED---rtlriW~~~--e~~q~-----I~lPtts--iWsa~~L 268 (745)
T KOG0301|consen 218 HTN--------------FVYSISMALSDGLIVS---TGED---RTLRIWKKD--ECVQV-----ITLPTTS--IWSAKVL 268 (745)
T ss_pred cce--------------EEEEEEecCCCCeEEE---ecCC---ceEEEeecC--ceEEE-----EecCccc--eEEEEEe
Confidence 544 6789997788888888 4667 779999986 33321 2222222 2344444
Q ss_pred cCCCCCceeEEEeeCceEEEEec
Q 014302 397 DKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 397 ~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
++ | -+.||.+||+|.+|+-
T Consensus 269 ~N---g-DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 269 LN---G-DIVVGGSDGRVRVFTV 287 (745)
T ss_pred eC---C-CEEEeccCceEEEEEe
Confidence 43 2 2778889999999974
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=5e-17 Score=150.48 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=171.7
Q ss_pred eeEEc-CCCCEEEEEeCCCeEEEEEccCCCCc----ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 104 GVSWH-QHKHIVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 104 ~l~~s-p~g~~lat~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
++..+ |.+++|.+|+.||.|++|++...... .......|...|+++...-+++.++.+++|.+|++|+....+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-- 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-- 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence 44444 45668999999999999998776332 133345599999999999999888999999999999997221
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe-CCCCCCcccCce--------------------------
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRFPGLGTP-------------------------- 231 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~~-------------------------- 231 (427)
-.++..++.| ...|.|+++ .++..++++|..
T Consensus 107 ---------------------~~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 107 ---------------------TFCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ---------------------chhHhhhhcc-cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 2456667777 888888888 555555433311
Q ss_pred --EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302 232 --IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 232 --~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~ 308 (427)
..++..+|++++-.+.|..|++|+..+.+++||-++.+. ..+.+|...|..+..++||..++++++++ +|++|++.
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-tIrlWdLg 243 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-TIRLWDLG 243 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc-eEEeeecc
Confidence 114567899999999998999999999999999999887 55669999999999999999999876655 88888888
Q ss_pred CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
...... +...|...|+++..+|+=+.+.+ |+.| |.|..=|+++.
T Consensus 244 qQrCl~------------T~~vH~e~VWaL~~~~sf~~vYs---G~rd---~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 244 QQRCLA------------TYIVHKEGVWALQSSPSFTHVYS---GGRD---GNIYRTDLRNP 287 (735)
T ss_pred ccceee------------eEEeccCceEEEeeCCCcceEEe---cCCC---CcEEecccCCc
Confidence 763311 11223347899999999888866 8888 55888888774
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=7.1e-17 Score=140.41 Aligned_cols=197 Identities=15% Similarity=0.317 Sum_probs=140.8
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcce-eeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~ 177 (427)
.=++|+|||-.. .|++|..-+.|++|...++.+..- .-..+|...|-.|+|||....+||++ +|++|+|||+.
T Consensus 213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR---- 288 (440)
T KOG0302|consen 213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR---- 288 (440)
T ss_pred cceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEec----
Confidence 457899999554 688888889999999888733221 22245999999999999987888776 67999999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
.+ . + . .....+.|.+.|..++|+.+-.+||+|+.|
T Consensus 289 -----s~--------------~---------~-~----------------~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 289 -----SG--------------P---------K-K----------------AAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred -----CC--------------C---------c-c----------------ceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 11 0 0 0 011234577889999999888899999999
Q ss_pred CcEEEEEcCCCCcc----ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-------Cccccccccccccc
Q 014302 258 GTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-------SLDAHLLPVDLPDI 326 (427)
Q Consensus 258 g~v~iwd~~~~~~~----~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~ 326 (427)
|+++|||+++.+.. .+..|..+|+++.|+|....++.+++.+..+.+|++.-... ...+ ..+++..
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~---L~dlPpQ 400 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG---LQDLPPQ 400 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc---hhcCCce
Confidence 99999999988764 55589999999999997665555666666888888875321 1111 1133322
Q ss_pred eeecc--CCceeEEEECCCCCEEEE
Q 014302 327 VSLTG--SQGIEKIAWDASGERLAV 349 (427)
Q Consensus 327 ~~~~~--~~~i~~v~~sp~g~~La~ 349 (427)
..+.| ...+..|.|++.-.-+++
T Consensus 401 LLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 401 LLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred eEEEecchhHhhhheeccCCCCeEE
Confidence 22333 347889999976554444
No 122
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=5.9e-17 Score=142.42 Aligned_cols=232 Identities=13% Similarity=0.164 Sum_probs=151.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|+++.|.+++..+++++.|+.+++|+++.. .......+|.+.|+++.|.-....++..+.|.++++||+...--
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C--- 295 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC--- 295 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---
Confidence 7999999999999999999999999999887 55666678999999999997764444444569999999972100
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
.......+....-.......+.+|....|. .|+-.+. ..-..+. ..+.|+++..+++|..|++++.|.++
T Consensus 296 -----~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR--fwD~Rs~--~~~~sv~-~gg~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 296 -----SKTVLPGSQCNDIVCSISDVISGHFDKKVR--FWDIRSA--DKTRSVP-LGGRVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred -----eccccccccccceEecceeeeecccccceE--EEeccCC--ceeeEee-cCcceeeEeeccCCeEEeeecCCCce
Confidence 000000011111000011122222222211 1110000 0000122 34589999999999999999999999
Q ss_pred EEEEcCCCCccc-cc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC-c
Q 014302 261 YLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G 334 (427)
Q Consensus 261 ~iwd~~~~~~~~-~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 334 (427)
.+.|+++.+... +. ......+.++|||+++|++.|+. ++.+++|++...+..... ...++. .
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-dgsv~iW~v~tgKlE~~l-----------~~s~s~~a 433 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-DGSVYIWSVFTGKLEKVL-----------SLSTSNAA 433 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-CCcEEEEEccCceEEEEe-----------ccCCCCcc
Confidence 999999887632 22 23345889999999999997654 458999988875322111 111111 6
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIY 365 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw 365 (427)
|++++|+|.|.+|+++ +.+ +.+.+|
T Consensus 434 I~s~~W~~sG~~Llsa---dk~---~~v~lW 458 (459)
T KOG0288|consen 434 ITSLSWNPSGSGLLSA---DKQ---KAVTLW 458 (459)
T ss_pred eEEEEEcCCCchhhcc---cCC---cceEec
Confidence 9999999999999884 444 568888
No 123
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=2.8e-16 Score=138.05 Aligned_cols=162 Identities=17% Similarity=0.363 Sum_probs=121.8
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCc-------ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEe
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKD-------ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA 171 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~ 171 (427)
+|.++.|+++.. .||+|+.|..|++|-++..... .......|...|+++.|+|+| .+||+|.| +.+.+|.
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWK 93 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEE
Confidence 799999999887 9999999999999998776111 122335699999999999999 79999988 8899998
Q ss_pred ccCCCCccccccCcccccccccCCC-CcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302 172 PSYPGNAASVRSGAASFLGALSRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY 250 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~ 250 (427)
... .++....+ +.+. ...|.. -..++.|...++.++|+|++.+
T Consensus 94 ~~~-~~~~~~d~---------e~~~~ke~w~v--------------------------~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 94 QGD-VRIFDADT---------EADLNKEKWVV--------------------------KKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred ecC-cCCccccc---------hhhhCccceEE--------------------------EEEecccccchhhhhccCCCce
Confidence 751 00000000 0000 001111 1234557889999999999999
Q ss_pred EEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 251 FFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 251 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
+++++.|..+++||+..++..... .|...+..++|.|-++++++-+.+.
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 999999999999999999986554 8999999999999999988755544
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.2e-17 Score=156.16 Aligned_cols=216 Identities=14% Similarity=0.273 Sum_probs=162.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|.++..-..++.+++|+.|..+-||..... .....+.+|..+|.++.|++.. .+|+.|.. ++|++||+.
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDle------ 100 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLE------ 100 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcch-hhhcccccCCceeeeehh------
Confidence 5666666666789999999999999988766 3444567899999999999988 77777765 899999998
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
+.+.+.. +.+|...+.++.|+|-+.|.+.|+.|..
T Consensus 101 -------------------eAk~vrt--------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd 135 (825)
T KOG0267|consen 101 -------------------EAKIVRT--------------------------LTGHLLNITSVDFHPYGEFFASGSTDTD 135 (825)
T ss_pred -------------------hhhhhhh--------------------------hhccccCcceeeeccceEEecccccccc
Confidence 2122332 2335567888889999999999999999
Q ss_pred EEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCcee
Q 014302 260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQGIE 336 (427)
Q Consensus 260 v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~ 336 (427)
+.+||++...| ..+.+|...+..+.|+|+|++++.++.+. .+.+|+..... ..+.+| .+.+.
T Consensus 136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~--------------e~~v~ 200 (825)
T KOG0267|consen 136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSH--------------EGKVQ 200 (825)
T ss_pred ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc-eeeeecccccccccccccc--------------ccccc
Confidence 99999997777 45557889999999999999999876544 56666554431 123333 34778
Q ss_pred EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302 337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 398 (427)
Q Consensus 337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 398 (427)
++.|+|..-+|+. |+.| ++|++||+++-+++. .+..+...+.|.+|.|.
T Consensus 201 sle~hp~e~Lla~---Gs~d---~tv~f~dletfe~I~-------s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 201 SLEFHPLEVLLAP---GSSD---RTVRFWDLETFEVIS-------SGKPETDGVRSLAFNPD 249 (825)
T ss_pred ccccCchhhhhcc---CCCC---ceeeeeccceeEEee-------ccCCccCCceeeeecCC
Confidence 9999998888877 8888 779999998765541 12223445668888876
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=3.5e-16 Score=144.69 Aligned_cols=269 Identities=13% Similarity=0.135 Sum_probs=167.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|..+.|-|....|++++.|.++++||+.........+..+|.+.|.+++|.|+...++++|++ +.|.|||+...+..
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d- 180 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD- 180 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh-
Confidence 7999999996669999999999999999988433344578999999999999999899999876 88999999721100
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC--CCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec-
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF- 256 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~- 256 (427)
. . +..+......+...+ +-..-. ..-+.++.+..+. +.|+.+ +..|...||+++.
T Consensus 181 ----~----~---------e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA~s~ti~---ssvTvv-~fkDe~tlaSaga~ 238 (720)
T KOG0321|consen 181 ----A----L---------EEFDNRIYGRHNTAP-TPSKPLKKRIRKWKAASNTIF---SSVTVV-LFKDESTLASAGAA 238 (720)
T ss_pred ----h----H---------HHHhhhhhccccCCC-CCCchhhccccccccccCcee---eeeEEE-EEeccceeeeccCC
Confidence 0 0 000000011110000 000000 0000111111111 124444 5568889996665
Q ss_pred CCcEEEEEcCCCCcc---------ccccC---CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC----Cccccccc
Q 014302 257 DGTFYLWETNTWTSE---------PWSST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP----SLDAHLLP 320 (427)
Q Consensus 257 dg~v~iwd~~~~~~~---------~~~~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 320 (427)
|+.|+|||++..... .+..+ ...+.+++....|.+|+..+. |+.|+.|++..... .+.++...
T Consensus 239 D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 239 DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNS 317 (720)
T ss_pred CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccc
Confidence 999999999987642 11123 345677777778899987777 55999999887422 22222210
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
...|. -..+||+.+|++ |+.| ...++|.+.+.+.-... ..| ....+.+++|.|.-
T Consensus 318 -----------sf~vk-s~lSpd~~~l~S---gSsd---~~ayiw~vs~~e~~~~~----l~G--ht~eVt~V~w~pS~- 372 (720)
T KOG0321|consen 318 -----------SFYVK-SELSPDDCSLLS---GSSD---EQAYIWVVSSPEAPPAL----LLG--HTREVTTVRWLPSA- 372 (720)
T ss_pred -----------eeeee-eecCCCCceEec---cCCC---cceeeeeecCccCChhh----hhC--cceEEEEEeecccc-
Confidence 00122 246899999999 7777 45999999875542111 112 23335688888852
Q ss_pred CCceeEEEeeCceEEEEec
Q 014302 401 QGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 401 ~g~~l~v~~~~g~i~~~~~ 419 (427)
... ++.|..|-++.+|.+
T Consensus 373 ~t~-v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 373 TTP-VATCSDDFRVKIWRL 390 (720)
T ss_pred CCC-ceeeccCcceEEEec
Confidence 233 445578999999998
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=3.5e-16 Score=139.47 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=170.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc---------------eeec-cCCcCCeeEEEEccCCCceEEEecC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA---------------CILT-SDSQRDVKVLEWRPNGGRSLSVGCK 164 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~---------------~~~~-~~~~~~v~~l~~sp~~~~~la~g~~ 164 (427)
.|.+++++|++.+..+++.+++|.=|++.++.... .... ..|...+.+++.|+|| ++|++|..
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~ 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGR 222 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCC
Confidence 89999999999999999999999999987762110 0011 2688889999999999 67777655
Q ss_pred -CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEE
Q 014302 165 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILK 243 (427)
Q Consensus 165 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~ 243 (427)
..|.||+.+ +. ..++ .++.|.+.|.+++
T Consensus 223 d~~v~Iw~~~---------t~----------------ehv~--------------------------~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 223 DRHVQIWDCD---------TL----------------EHVK--------------------------VFKGHRGAVSSLA 251 (479)
T ss_pred CceEEEecCc---------cc----------------chhh--------------------------cccccccceeeee
Confidence 778899998 11 1111 2455788899999
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 322 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (427)
|-..-..|++++.|++|++|++..... ..+.+|...|.++.-..-++.+ +.+..|.+.++|.+.+...
T Consensus 252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v-tVGgrDrT~rlwKi~eesq---------- 320 (479)
T KOG0299|consen 252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCV-TVGGRDRTVRLWKIPEESQ---------- 320 (479)
T ss_pred eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceE-EeccccceeEEEeccccce----------
Confidence 988888899999999999999987766 4555999999999887766655 4555666888888865421
Q ss_pred cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe--eeeeeeCCCCCCC---ceeEEecc
Q 014302 323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS--LIGFIRGPGDNPK---PVAFSFHD 397 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~f~~ 397 (427)
.....+.+.+.+++|=.+. .+++ |+++ |.|.+|++.....+... +.|.......... ...++-.|
T Consensus 321 ---lifrg~~~sidcv~~In~~-Hfvs---GSdn---G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 321 ---LIFRGGEGSIDCVAFINDE-HFVS---GSDN---GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred ---eeeeCCCCCeeeEEEeccc-ceee---ccCC---ceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc
Confidence 1112234478899987654 4556 6766 78999999776654333 2333322111111 12344555
Q ss_pred CCCCCceeEEEeeCceEEEEe
Q 014302 398 KFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 398 ~~~~g~~l~v~~~~g~i~~~~ 418 (427)
. ..++|.|.-+|.|.+|-
T Consensus 391 ~---sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 391 G---SDLLASGSWSGCVRLWK 408 (479)
T ss_pred c---CceEEecCCCCceEEEE
Confidence 3 56899998899888885
No 127
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=1.6e-16 Score=146.68 Aligned_cols=238 Identities=15% Similarity=0.243 Sum_probs=160.8
Q ss_pred CCCCCceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCC-----CcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEE
Q 014302 96 LLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGIC 168 (427)
Q Consensus 96 ~l~~~~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~ 168 (427)
+..+..|+.+.|.|- ..+||+++.||.|+||.+..++ ..+......|...|+++.|+|--..+|++++ +.+|+
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE 703 (1012)
T ss_pred cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence 344458999999995 4699999999999999997762 2233445678999999999998767887775 48999
Q ss_pred EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG 248 (427)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g 248 (427)
+||+. ++ . + ...+.+|.+.|..++|||||
T Consensus 704 lWDl~---------~~----------------~----~----------------------~~~l~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 704 LWDLA---------NA----------------K----L----------------------YSRLVGHTDQIFGIAWSPDG 732 (1012)
T ss_pred eeehh---------hh----------------h----h----------------------hheeccCcCceeEEEECCCC
Confidence 99997 11 0 0 11345688899999999999
Q ss_pred CEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc-ccccccccc
Q 014302 249 DYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD-AHLLPVDLP 324 (427)
Q Consensus 249 ~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 324 (427)
+.+++.+.||+|++|+.++.....+. .....-..+.|.-||+++++.+-+...-+.+.+++... +. ++..
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~-l~~~pl~----- 806 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT-LDLRPLY----- 806 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh-ccCCcce-----
Confidence 99999999999999999887764433 22244457889999999998776665555555555321 11 1111
Q ss_pred cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 325 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 325 ~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
...+...-.+.--.+++|...|..+ |-.| ..|++|.+-....+. .|+..+..+.... .++|+++..
T Consensus 807 -t~~lDvaps~LvP~YD~Ds~~lflt--GKGD---~~v~~yEv~~esPy~-lpl~~f~sp~~hq---Gl~fl~K~~ 872 (1012)
T KOG1445|consen 807 -TQVLDVAPSPLVPHYDYDSNVLFLT--GKGD---RFVNMYEVIYESPYL-LPLAPFMSPVGHQ---GLAFLQKLK 872 (1012)
T ss_pred -eeeecccCccccccccCCCceEEEe--cCCC---ceEEEEEecCCCcee-eecccccCCCccc---ceeeecccc
Confidence 1111111123333567888888776 6666 559999986655443 3333333333222 466777644
No 128
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.4e-16 Score=141.64 Aligned_cols=248 Identities=15% Similarity=0.269 Sum_probs=170.0
Q ss_pred CCceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 176 (427)
Q Consensus 99 ~~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~ 176 (427)
.+.+.++.|+.... .+|+.+.|..+++|.-+....+...+.......-.|++..... .++++|+ .+.|+|||+.
T Consensus 34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~--- 109 (673)
T KOG4378|consen 34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS-LYEISGGQSGCVKIWDLR--- 109 (673)
T ss_pred CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc-eeeeccCcCceeeehhhH---
Confidence 34689999998775 3344567889999976554222222222222244555555555 4555554 4889999997
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEec-cCC
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRG-FGG 238 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~-~~~ 238 (427)
...+.+.++.| ...|+++.++....+++... .+... .+.
T Consensus 110 ----------------------~kl~hr~lkdh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 110 ----------------------AKLIHRFLKDH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred ----------------------HHHHhhhccCC-cceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 22455667777 69999999988777765332 12222 345
Q ss_pred eEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcc-cc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302 239 LSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE-PW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 315 (427)
Q Consensus 239 v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~-~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~ 315 (427)
|.-+.|||..++|+ +++.+|.|.+||+....+. .+ ..|..+...+||+|.+..|++.-+-+..|+++++..+...
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-- 244 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-- 244 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc--
Confidence 67899999999877 8999999999999877763 33 3899999999999998888877777778888877765221
Q ss_pred ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 395 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 395 (427)
..+....+...|+|+++|.+|+. |+.. |.|..||++..+. |...+.+.... +.|++|
T Consensus 245 -----------~~l~y~~Plstvaf~~~G~~L~a---G~s~---G~~i~YD~R~~k~----Pv~v~sah~~s--Vt~vaf 301 (673)
T KOG4378|consen 245 -----------DRLTYSHPLSTVAFSECGTYLCA---GNSK---GELIAYDMRSTKA----PVAVRSAHDAS--VTRVAF 301 (673)
T ss_pred -----------ceeeecCCcceeeecCCceEEEe---ecCC---ceEEEEecccCCC----CceEeeecccc--eeEEEe
Confidence 11222236799999999999988 6666 7799999987543 22333333333 568888
Q ss_pred ccC
Q 014302 396 HDK 398 (427)
Q Consensus 396 ~~~ 398 (427)
.+.
T Consensus 302 q~s 304 (673)
T KOG4378|consen 302 QPS 304 (673)
T ss_pred eec
Confidence 775
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.3e-15 Score=127.84 Aligned_cols=247 Identities=15% Similarity=0.261 Sum_probs=164.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEcc-CCCceEEEec-CCeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRP-NGGRSLSVGC-KGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g~-~~~i~iw~~~~~~ 176 (427)
-|+++.|.+.|+++|+++.|++|+|||.... ..........|.+.|..+.|.+ .-.+++|+.+ |+++.||.-....
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 4899999999999999999999999997554 3334444456999999999974 4337888775 5999999764100
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC--CCcccCc------------------------
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RFPGLGT------------------------ 230 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~~------------------------ 230 (427)
.+..+.+|.....+... ...|+.+.|.|.- -.+++..
T Consensus 95 ----------------~~~~~~~Wv~~ttl~Ds-rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 95 ----------------EEAHGRRWVRRTTLVDS-RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred ----------------cccccceeEEEEEeecC-CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 11123366666666665 7889999998843 2222110
Q ss_pred ------eEEeccCCeEEEEEccCC---CEEEEEecC-----CcEEEEEcCCCCc-----cccccCCCCeeEEEECCCC--
Q 014302 231 ------PIRRGFGGLSILKWSPTG---DYFFAAKFD-----GTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEG-- 289 (427)
Q Consensus 231 ------~~~~~~~~v~~~~~sp~g---~~l~~~~~d-----g~v~iwd~~~~~~-----~~~~~~~~~v~~v~~spdg-- 289 (427)
+...+.....|+.|+|.- .+||+|+.+ +.++||....... ..+..|..+|.+++|.|+-
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 111245677899999743 478888765 4789997655431 2344899999999999962
Q ss_pred --CEEEEEEcCCceeeeeeeCCCCCCc--cccccc-----cccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcce
Q 014302 290 --RMILLAFAGSLTLGSIHFASKPPSL--DAHLLP-----VDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYK 359 (427)
Q Consensus 290 --~~l~~~~~~~~~i~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~ 359 (427)
..||+++ .+| ++++++......+ +....+ .++.....+. |.+.|+.|.|+-.|..|++ .++|
T Consensus 238 ~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS---tGdD--- 309 (361)
T KOG2445|consen 238 SYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS---TGDD--- 309 (361)
T ss_pred ceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee---cCCC---
Confidence 3455554 444 7788777532111 111111 1222233233 4559999999999999988 5566
Q ss_pred eEEEEEEeccCce
Q 014302 360 GLIAIYDARRTPL 372 (427)
Q Consensus 360 g~i~vwd~~~~~~ 372 (427)
|+|++|...-...
T Consensus 310 G~VRLWkany~n~ 322 (361)
T KOG2445|consen 310 GCVRLWKANYNNL 322 (361)
T ss_pred ceeeehhhhhhhh
Confidence 8999998765443
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=4.9e-16 Score=137.95 Aligned_cols=204 Identities=18% Similarity=0.326 Sum_probs=153.5
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|.+++|+..-+ .||+|+.|.+|++||++.+ ++......|.+.|.+++|+|....+|.+|+. +++.+.|.+.+++
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~- 321 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN- 321 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-
Confidence 577888988765 8999999999999999998 5666666799999999999998888888865 9999999871110
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d 257 (427)
....|. ..+.|-.++|.|.....+ +++.|
T Consensus 322 ------------------------------------s~~~wk--------------~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 322 ------------------------------------SGKEWK--------------FDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred ------------------------------------cCceEE--------------eccceEEEEecCCCceeEEEecCC
Confidence 011121 245678888988776544 88899
Q ss_pred CcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC-ccccccccccccceeeccCCc
Q 014302 258 GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS-LDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 258 g~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 334 (427)
|+|+-+|+|......+. .|...|.++++++.-..++++.+.++.+.+|++....+. ...|...+ +.
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~-----------~r 420 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL-----------GR 420 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc-----------cc
Confidence 99999999998654443 899999999999988888777788888999988876442 22222211 13
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
..+++++|+-.++.+. |+.. +.++|||+.+...+
T Consensus 421 l~c~~~~~~~a~~la~--GG~k---~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAF--GGEK---AVLRVWDIFTNSPV 454 (463)
T ss_pred eeecccCCCcceEEEe--cCcc---ceEEEeecccChhH
Confidence 5777888887776664 5555 56999999776543
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=140.71 Aligned_cols=200 Identities=14% Similarity=0.234 Sum_probs=144.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.+.....||++++||..+..|.|.|-...++ .......-.+.|.++.|+.|+..+++++++|.|.+|++.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~---eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~------- 374 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTK---ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR------- 374 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhh---hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecC-------
Confidence 4667788999999999999999999554444 333334456789999999999889999999999999997
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
...++..+.. +| .-.-++++.|+++.+||+|+..|.|
T Consensus 375 ------------------~~~~~~rf~D-------------~G------------~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 375 ------------------QNSCLHRFVD-------------DG------------SVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred ------------------CcceEEEEee-------------cC------------ccceeeeeecCCCceEEeccCcceE
Confidence 1112211110 11 1134578888999999999999999
Q ss_pred EEEEcCCCC----cc---ccccCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302 261 YLWETNTWT----SE---PWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 261 ~iwd~~~~~----~~---~~~~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
.|||..+-. +. .+......|.++.|++|++.|+.++... ..++.+++.+... + -.++... ..-
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-F------sNfP~~n--~~v 482 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-F------SNFPTSN--TKV 482 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-e------ccCCCCC--Ccc
Confidence 999965432 11 1225677899999999999999876544 4788888877521 0 0111110 011
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
+.|++|+|||.|.+||+ |..+ |.|.+|.+.
T Consensus 483 g~vtc~aFSP~sG~lAv---GNe~---grv~l~kL~ 512 (514)
T KOG2055|consen 483 GHVTCMAFSPNSGYLAV---GNEA---GRVHLFKLH 512 (514)
T ss_pred cceEEEEecCCCceEEe---ecCC---CceeeEeec
Confidence 37899999999999999 7777 679999885
No 132
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2e-15 Score=122.82 Aligned_cols=216 Identities=19% Similarity=0.282 Sum_probs=144.8
Q ss_pred CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCcee--eeE
Q 014302 142 SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT--ALS 218 (427)
Q Consensus 142 ~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~ 218 (427)
-...|.+++|+|.| .+.|+|++ .+++|-... ..+. ++..+...+. .+.
T Consensus 31 dsqairav~fhp~g-~lyavgsnskt~ric~yp---------------------------~l~~-~r~~hea~~~pp~v~ 81 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYP---------------------------ALID-LRHAHEAAKQPPSVL 81 (350)
T ss_pred chhheeeEEecCCC-ceEEeccCCceEEEEccc---------------------------cccC-cccccccccCCCeEE
Confidence 34579999999999 78888887 777776543 0011 1111111111 111
Q ss_pred eCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc------cccccCCCCeeEEEECCC----
Q 014302 219 WGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPE---- 288 (427)
Q Consensus 219 ~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~v~~v~~spd---- 288 (427)
.+.-+.|.+.|+|.+|||+|.+|++|+.|++|++.-.....+ ..+..|.+.|..++|-.+
T Consensus 82 ----------~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 82 ----------CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG 151 (350)
T ss_pred ----------eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC
Confidence 112234788999999999999999999999999986655443 234479999999999643
Q ss_pred CCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 289 GRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 289 g~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
|..|++++.++..|++-+-...++ .+.+|. +.|.++ ++-+|-.+|+ |+.| .+|++||
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sght--------------ghilal-yswn~~m~~s---gsqd---ktirfwd 210 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHT--------------GHILAL-YSWNGAMFAS---GSQD---KTIRFWD 210 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCc--------------ccEEEE-EEecCcEEEc---cCCC---ceEEEEe
Confidence 567777777776777665554422 233333 255554 3445777777 8888 7799999
Q ss_pred eccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 367 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
++-+.++...-..+-.+..+...+..++..|. |.||+.|-.|..+.+|++.
T Consensus 211 lrv~~~v~~l~~~~~~~glessavaav~vdps---grll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS---GRLLASGHADSSCMLYDIR 261 (350)
T ss_pred eeccceeeeccCcccCCCcccceeEEEEECCC---cceeeeccCCCceEEEEee
Confidence 99888876554433333323333456677775 9999999999999999974
No 133
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.71 E-value=1.7e-15 Score=126.23 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=153.0
Q ss_pred eeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceee
Q 014302 137 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216 (427)
Q Consensus 137 ~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 216 (427)
....+|..+++.+.++.+|+.++.++.|....+|--.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~------------------------------------------- 40 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL------------------------------------------- 40 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec-------------------------------------------
Confidence 4557899999999999999777777888999999764
Q ss_pred eEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE
Q 014302 217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF 296 (427)
Q Consensus 217 ~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~ 296 (427)
+|+.++ .+.+|.+.|+++..+-+.+++++|+.|.++++||+.++++.........|..+.|+++|.++++..
T Consensus 41 -----nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 41 -----NGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILAST 112 (327)
T ss_pred -----CCceee---eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEe
Confidence 122222 466789999999999999999999999999999999999977777888999999999999988765
Q ss_pred cCC----ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 297 AGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 297 ~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
... +.+.++++.+......... +-.........++.+.|+|-+++|+. |.++ |.|..||++++..
T Consensus 113 D~~mg~~~~v~~fdi~~~~~~~~s~e-----p~~kI~t~~skit~a~Wg~l~~~ii~---Ghe~---G~is~~da~~g~~ 181 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSSDIDSEE-----PYLKIPTPDSKITSALWGPLGETIIA---GHED---GSISIYDARTGKE 181 (327)
T ss_pred hhhcCcceEEEEEEccCChhhhcccC-----ceEEecCCccceeeeeecccCCEEEE---ecCC---CcEEEEEcccCce
Confidence 443 3566666654321111110 01122223357899999999999988 7777 7799999999865
Q ss_pred EEEeeeeeeeCCC-CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 373 ISLSLIGFIRGPG-DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
+ ++... .......++|.++ ......+..|-+-.+|++
T Consensus 182 ~-------v~s~~~h~~~Ind~q~s~d---~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 182 L-------VDSDEEHSSKINDLQFSRD---RTYFITGSKDTTAKLVDV 219 (327)
T ss_pred e-------eechhhhccccccccccCC---cceEEecccCccceeeec
Confidence 4 22211 1113446667665 445666767777777764
No 134
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=3.2e-16 Score=144.78 Aligned_cols=255 Identities=19% Similarity=0.294 Sum_probs=168.5
Q ss_pred EEcCCCCEEEE--EeCCCeEEEEEccCCCCcceeeccC--CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302 106 SWHQHKHIVAF--ISGSTQVIVRDYEDSGKDACILTSD--SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS 180 (427)
Q Consensus 106 ~~sp~g~~lat--~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~ 180 (427)
-|+-+..++|+ ++..|.|-||+++..++.+-....+ ....|+++.|.|-....||++++ +.|+||.+..++-+..
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 35555666665 3567999999998874433222222 44579999999988888998877 8899999973221111
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEEecCCc
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGT 259 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~ 259 (427)
.. .....+..|...|+++.|+|-- ..|++++.|.+
T Consensus 666 ~~--------------------------------------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 666 EM--------------------------------------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred cC--------------------------------------------CcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence 00 0123566788899999999965 46669999999
Q ss_pred EEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-CccccccccccccceeeccCCceeE
Q 014302 260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 260 v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
|++||+++.+. ..+.+|...|..++|||||+.+++.+.++ .+++++-.+... ..++.. | .++.-..
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-~~rVy~Prs~e~pv~Eg~g-p----------vgtRgAR 769 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-TLRVYEPRSREQPVYEGKG-P----------VGTRGAR 769 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-eEEEeCCCCCCCccccCCC-C----------ccCccee
Confidence 99999999887 45669999999999999999999887665 666655444321 111111 1 1123456
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
+.|--||++++++ |-+......|.+||.++...--+. ..+.... +.-+..+-++..+.++..|=.|-+|..|
T Consensus 770 i~wacdgr~viv~--Gfdk~SeRQv~~Y~Aq~l~~~pl~----t~~lDva--ps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 770 ILWACDGRIVIVV--GFDKSSERQVQMYDAQTLDLRPLY----TQVLDVA--PSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred EEEEecCcEEEEe--cccccchhhhhhhhhhhccCCcce----eeeeccc--CccccccccCCCceEEEecCCCceEEEE
Confidence 7788899998875 333222356999998764321111 1111111 1122223233456788889889999999
Q ss_pred eccccCC
Q 014302 418 PLIFRSH 424 (427)
Q Consensus 418 ~~~~~~~ 424 (427)
.+.|++-
T Consensus 842 Ev~~esP 848 (1012)
T KOG1445|consen 842 EVIYESP 848 (1012)
T ss_pred EecCCCc
Confidence 9998874
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=1.4e-14 Score=130.72 Aligned_cols=290 Identities=12% Similarity=0.134 Sum_probs=179.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC-cc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN-AA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~-~~ 179 (427)
-|.|++|.++|+.+ +|..+|.|.||+.... ......+.|.+.|.++..-.+| .+|..|.|..|..||-+.... +.
T Consensus 248 ~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 248 FVLCVTFLENGDVI-TGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred EEEEEEEcCCCCEE-eecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecCc-cEeecCccceEEeccccccccccc
Confidence 69999999999755 8999999999997555 3444445899999999999999 788866678999999542111 00
Q ss_pred cc--ccCcccccccccCCCCcceeE----------------eehhcccCCCceeeeEeCCCCCCcccCce----------
Q 014302 180 SV--RSGAASFLGALSRGPGTRWTL----------------VDFLRSQNGEQITALSWGPDGRFPGLGTP---------- 231 (427)
Q Consensus 180 ~~--~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~---------- 231 (427)
.+ ..|+... +.. +.+++.. .....+| ......++.+|+..++.+...
T Consensus 324 elPe~~G~iRt---v~e-~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~q~~T~gqdk~v~lW~~~ 398 (626)
T KOG2106|consen 324 ELPEQFGPIRT---VAE-GKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSKNQLLTCGQDKHVRLWNDH 398 (626)
T ss_pred cCchhcCCeeE---Eec-CCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCChhheeeccCcceEEEccCC
Confidence 00 0000000 000 0000000 0011122 334456777776655443321
Q ss_pred ----EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302 232 ----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 307 (427)
Q Consensus 232 ----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~ 307 (427)
-+....+..++.|+|.| .++.|+..|...+.|.++...........++..+.|+|+|.+||.++ .++.|+++.+
T Consensus 399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~V 476 (626)
T KOG2106|consen 399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRV 476 (626)
T ss_pred ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEE
Confidence 12234678888899999 88899999999999988865555555588999999999999999875 5558888888
Q ss_pred CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE-------e---e
Q 014302 308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL-------S---L 377 (427)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~-------~---~ 377 (427)
......+. ......+.+|+.+.||+|+++|.+ .+.| -.|..|....-+.... + -
T Consensus 477 s~~g~~y~----------r~~k~~gs~ithLDwS~Ds~~~~~---~S~d---~eiLyW~~~~~~~~ts~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 477 SANGRKYS----------RVGKCSGSPITHLDWSSDSQFLVS---NSGD---YEILYWKPSECKQITSVKDVKWATYTCT 540 (626)
T ss_pred CCCCcEEE----------EeeeecCceeEEeeecCCCceEEe---ccCc---eEEEEEccccCcccceecceeeeeeEEE
Confidence 76422111 011112258999999999999988 4444 3499994322111100 0 1
Q ss_pred eeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 378 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 378 ~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
.||.-..+.... .+.-......+.+||.|-..|.|++|.-
T Consensus 541 lGF~v~g~s~~t--~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 541 LGFEVFGGSDGT--DINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred EEEEEecccCCc--hHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 222211111111 1111122335779999999999999864
No 136
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=5.1e-15 Score=129.73 Aligned_cols=216 Identities=16% Similarity=0.244 Sum_probs=154.2
Q ss_pred CCCCCCCCC--ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCC-----CCcceeeccCCcCCeeEEEEccCCCceE-EEe
Q 014302 92 DHVHLLPEV--DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDS-----GKDACILTSDSQRDVKVLEWRPNGGRSL-SVG 162 (427)
Q Consensus 92 ~~~~~l~~~--~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~v~~l~~sp~~~~~l-a~g 162 (427)
....+..+| .|..++|+|.. +.||+|+.|.+|.||.+... ..++.....+|...|--++|+|.-.++| ++|
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 334445566 89999999966 48999999999999998765 2244566678999999999999876655 456
Q ss_pred cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEE
Q 014302 163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSIL 242 (427)
Q Consensus 163 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~ 242 (427)
+|+.|.+|++. ++ ..+- .+. |..-|+++
T Consensus 152 ~Dn~v~iWnv~---------tg----------------eali--------------------------~l~-hpd~i~S~ 179 (472)
T KOG0303|consen 152 SDNTVSIWNVG---------TG----------------EALI--------------------------TLD-HPDMVYSM 179 (472)
T ss_pred CCceEEEEecc---------CC----------------ceee--------------------------ecC-CCCeEEEE
Confidence 78999999998 22 0010 011 56689999
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCC-CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSG-FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 320 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~-~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 320 (427)
+|+.||.+|++.+.|+.|||||.++++...-. .|.+ .-..+.|-.+|. +++++-..-..+++-+|+....-+ |
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e----P 254 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE----P 254 (472)
T ss_pred EeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC----c
Confidence 99999999999999999999999998874332 4443 445677888888 444444443566777776421100 0
Q ss_pred cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
+ ....+..+..|.---|++|.+.|..| |-.| +.|+.|.+.....
T Consensus 255 ~---~~~elDtSnGvl~PFyD~dt~ivYl~--GKGD---~~IRYyEit~d~P 298 (472)
T KOG0303|consen 255 I---ALQELDTSNGVLLPFYDPDTSIVYLC--GKGD---SSIRYFEITNEPP 298 (472)
T ss_pred c---eeEEeccCCceEEeeecCCCCEEEEE--ecCC---cceEEEEecCCCc
Confidence 0 12233444567777789999999998 5555 5599999987663
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.8e-15 Score=127.13 Aligned_cols=237 Identities=14% Similarity=0.216 Sum_probs=142.7
Q ss_pred ccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeE
Q 014302 139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (427)
Q Consensus 139 ~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (427)
..+|.+.|++++|+.||+.+..++.|+.|+||+++ +.. .. +-.+++ . .-.....+.+.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~-----~~--------------eHr~~R-~-nve~dhpT~V~ 139 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVR-DFE-----NK--------------EHRCIR-Q-NVEYDHPTRVV 139 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecc-hhh-----hh--------------hhhHhh-c-cccCCCceEEE
Confidence 36899999999999999666666677999999986 100 00 000000 0 00122345667
Q ss_pred eCCCCCCc----ccCce--------------------------EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCC
Q 014302 219 WGPDGRFP----GLGTP--------------------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 268 (427)
Q Consensus 219 ~spdg~~l----~~~~~--------------------------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 268 (427)
|.||-+-+ ..+.. -+.|.-.+..+-....+++|++++.|..|.+|+++ +
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence 77765531 11111 11234455556666788899999999999999998 4
Q ss_pred Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee-CCCCCCccccccccccccceeec-cCCceeEEEECCCCC
Q 014302 269 TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-ASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGE 345 (427)
Q Consensus 269 ~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~ 345 (427)
+. .........-...+.||+|+++++++-.- -+++|.. ..+..+++.-. ....+. |...|..++||++.+
T Consensus 219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f~kdG~fqev~------rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIFTKDGTFQEVK------RVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred ceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEeccCcchhhhh------hhheeccchhheeeeeeCCCcc
Confidence 44 33334555566788999999999765443 4445542 22322221111 111222 334899999999999
Q ss_pred EEEEEEecCCCcceeEEEEEEeccC-------ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 346 RLAVSYKGGDDIYKGLIAIYDARRT-------PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 346 ~La~~~~~~~d~~~g~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
.+++ .+.| |+++|||+.-. .++..-+ .+...+ ..+++.++..|. |..||+. ....+++|-
T Consensus 292 r~vt---vSkD---G~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aa--g~~p~RL~lsP~---g~~lA~s-~gs~l~~~~ 358 (420)
T KOG2096|consen 292 RAVT---VSKD---GKWRIWDTDVRYEAGQDPKILKEGS-APLHAA--GSEPVRLELSPS---GDSLAVS-FGSDLKVFA 358 (420)
T ss_pred eeEE---EecC---CcEEEeeccceEecCCCchHhhcCC-cchhhc--CCCceEEEeCCC---CcEEEee-cCCceEEEE
Confidence 9999 4555 77999997421 1111000 111122 234778888886 7888887 455666653
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=2.5e-14 Score=129.08 Aligned_cols=261 Identities=15% Similarity=0.197 Sum_probs=180.2
Q ss_pred ceeeeEEcCC--CCEEEEE--eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302 101 DLQGVSWHQH--KHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~--g~~lat~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~ 176 (427)
.|.|++||+- |.+|+.. +.+..+.|||++.+.. ..-....++.|....|+|.+..++.+.+.+.+.+|+..
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~--~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~--- 230 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK--LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR--- 230 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhhhc--cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc---
Confidence 7999999984 4466554 4456788999988722 22223345678999999999999999999999999886
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc--C--------------ceEEeccCCeE
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL--G--------------TPIRRGFGGLS 240 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~--------------~~~~~~~~~v~ 240 (427)
++.-.+....++.+....|.|++|.++|..+.- + .....|.++|.
T Consensus 231 -------------------~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~ 291 (626)
T KOG2106|consen 231 -------------------GGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF 291 (626)
T ss_pred -------------------CCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence 122334455677777788999999998886320 0 11236899999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEcCCCCc--ccc---------------------------------------ccCCCC
Q 014302 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPW---------------------------------------SSTSGF 279 (427)
Q Consensus 241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~---------------------------------------~~~~~~ 279 (427)
+++.-.+|..|- |+.|+.|..||-.-.+. ..+ ..|...
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de 370 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE 370 (626)
T ss_pred EEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc
Confidence 999999997666 99999999998321111 000 134455
Q ss_pred eeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcce
Q 014302 280 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 359 (427)
Q Consensus 280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~ 359 (427)
...++.+|+...++++ +.++.+.+|+ +.+..+ ......++.++.|+|.| .||+ |...
T Consensus 371 lwgla~hps~~q~~T~-gqdk~v~lW~--~~k~~w-------------t~~~~d~~~~~~fhpsg-~va~---Gt~~--- 427 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTC-GQDKHVRLWN--DHKLEW-------------TKIIEDPAECADFHPSG-VVAV---GTAT--- 427 (626)
T ss_pred eeeEEcCCChhheeec-cCcceEEEcc--CCceeE-------------EEEecCceeEeeccCcc-eEEE---eecc---
Confidence 6667777776666654 4444555554 111111 11122378999999999 8888 5544
Q ss_pred eEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 360 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 360 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
|...|.|.++..++++.-. .+...++.|.|. |..||||.-|+.|.+|.+-
T Consensus 428 G~w~V~d~e~~~lv~~~~d--------~~~ls~v~ysp~---G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD--------NEQLSVVRYSPD---GAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ceEEEEecccceeEEEEec--------CCceEEEEEcCC---CCEEEEecCCCeEEEEEEC
Confidence 6699999998777755422 222447889886 9999999999999999864
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=8.1e-17 Score=150.78 Aligned_cols=186 Identities=15% Similarity=0.265 Sum_probs=142.4
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
+.+| .|.++.|++...+|+.|+.+|+|++||+... .......+|...+.++.|+|-+ .+.|+|+. ..+++||+.
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcceeeeccce-EEeccccccccceehhhh
Confidence 3444 8999999999999999999999999999987 5666778999999999999999 66677754 789999997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~ 253 (427)
+- -|. ..++.|...+..+.|+|+|++++.
T Consensus 143 k~-------------------------Gc~--------------------------~~~~s~~~vv~~l~lsP~Gr~v~~ 171 (825)
T KOG0267|consen 143 KK-------------------------GCS--------------------------HTYKSHTRVVDVLRLSPDGRWVAS 171 (825)
T ss_pred cc-------------------------Cce--------------------------eeecCCcceeEEEeecCCCceeec
Confidence 10 111 123346678889999999999999
Q ss_pred EecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302 254 AKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
++.|..++|||...++. ..+..|...+.++.|+|..-.++.|+.+. ++..|++..-...-.+. ..-
T Consensus 172 g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-tv~f~dletfe~I~s~~------------~~~ 238 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR-TVRFWDLETFEVISSGK------------PET 238 (825)
T ss_pred cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc-eeeeeccceeEEeeccC------------Ccc
Confidence 99999999999988887 45668999999999999777666655444 55555444210000000 012
Q ss_pred CceeEEEECCCCCEEEE
Q 014302 333 QGIEKIAWDASGERLAV 349 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~ 349 (427)
..|.+++|+|+++.+++
T Consensus 239 ~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLS 255 (825)
T ss_pred CCceeeeecCCceeeec
Confidence 37899999999999877
No 140
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.6e-15 Score=134.13 Aligned_cols=191 Identities=18% Similarity=0.287 Sum_probs=125.6
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccc
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~ 182 (427)
.+++|+.+|..||+|+.||++|||++... ........|.+.|.++.|+|||+.+...+.+ ..+||+++ .+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-TGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-cCchhhhc
Confidence 68999999999999999999999998877 4444556788999999999999544455555 89999998 22221111
Q ss_pred c-Ccc---cccccccCCCC-cceeEeehhcccCCCc-eeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 183 S-GAA---SFLGALSRGPG-TRWTLVDFLRSQNGEQ-ITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 183 ~-~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
+ ... -....+..++. ..+.+......+.... ...-.|+-+ +.+...+.+. ....|++++.|+||++++.|+.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIK-RFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhh-ccCcceeEEEcCCCcEEEEecc
Confidence 1 100 00001111111 1111111111110111 112334433 3333222332 2457999999999999999999
Q ss_pred CCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 257 DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
||.|-|++..+.+...+. .|...|+.+.|+||.++++..+.+.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 999999999988885554 8999999999999999998754444
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=2.7e-15 Score=140.15 Aligned_cols=226 Identities=17% Similarity=0.196 Sum_probs=153.6
Q ss_pred ccccccCCCCCCCCCC--ceeeeEEcCCCCEEEEEeCC-----CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc
Q 014302 85 IKPLLHPDHVHLLPEV--DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR 157 (427)
Q Consensus 85 ~~~~~~p~~~~~l~~~--~V~~l~~sp~g~~lat~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 157 (427)
++..++|+..++ .+| .|++++.+|+|++||++... ..|+||+...- .......+|.-.|+.++|||||.+
T Consensus 510 q~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 510 QQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheecccceEEEEEEECCCCcE
Confidence 344566665554 555 99999999999999998654 46788876655 444456789999999999999988
Q ss_pred eEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccC
Q 014302 158 SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFG 237 (427)
Q Consensus 158 ~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~ 237 (427)
+|+++.|.++.+|....+.. ..++ .+ ..+.|..
T Consensus 587 LLsvsRDRt~sl~~~~~~~~--------------------------~e~~------------------fa---~~k~HtR 619 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIK--------------------------DEFR------------------FA---CLKAHTR 619 (764)
T ss_pred EEEeecCceEEeeeeecccc--------------------------hhhh------------------hc---cccccce
Confidence 88888889999998861100 0000 00 1345677
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCC--Ccc---ccccCCCCeeEEEECC----CCCEEEEEEcCCceeeeeeeC
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TSE---PWSSTSGFVTGATWDP----EGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~--~~~---~~~~~~~~v~~v~~sp----dg~~l~~~~~~~~~i~~~~~~ 308 (427)
-|++..|+|++++++++|.|++|++|..... +.. ....+...|++++|.| +...+++.+-+.|.|.+|+..
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 8999999999999999999999999998776 332 2337889999999987 223355555666688888766
Q ss_pred CC--CCCccccccccccccceeeccCCceeEEEECCC--------CC--EEEEEEecCCCcceeEEEEEEec
Q 014302 309 SK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS--------GE--RLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 309 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--------g~--~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.. ..+...+..+. .......+...|+.+.|+|. .. .|++ +++| ..++++++.
T Consensus 700 ~~~~~~~~~~~~~~~--~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~---~g~D---~~vri~nv~ 763 (764)
T KOG1063|consen 700 REHRQVTVGTFNLDT--RLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAV---GGDD---ESVRIFNVD 763 (764)
T ss_pred cccccccceeeeecc--ccccccChHHhhheeEeccccccccccccceeEEee---eccc---ceeEEeecc
Confidence 32 11111111111 11112233447899999976 23 4577 5555 569998764
No 142
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=2.9e-13 Score=125.75 Aligned_cols=260 Identities=12% Similarity=0.102 Sum_probs=155.7
Q ss_pred ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~ 178 (427)
....++++|++++|++++ .++.|.+|+++..+................++|+|+++.++++.. ++.+.+|+++.++..
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~ 115 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP 115 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC
Confidence 456789999999887664 578899999973321111111123345678999999955555543 488999998611100
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d 257 (427)
. .... .+ .+......++++|+|++++ +...+
T Consensus 116 ~---------------------~~~~--------------------------~~-~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 116 V---------------------APIQ--------------------------II-EGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred C---------------------Ccee--------------------------ec-cCCCcccEeEeCCCCCEEEEeeCCC
Confidence 0 0000 00 0112456788999999987 55567
Q ss_pred CcEEEEEcCCCCccc-------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec
Q 014302 258 GTFYLWETNTWTSEP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 330 (427)
Q Consensus 258 g~v~iwd~~~~~~~~-------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (427)
+.|.+||+.+..... ..........++|+|+|++++++...++.+.+|++......+.........+. ...
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~--~~~ 225 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA--DFS 225 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC--cCC
Confidence 999999997633211 01223446789999999999988776779999988743222110000000000 001
Q ss_pred cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe-
Q 014302 331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW- 409 (427)
Q Consensus 331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~- 409 (427)
+......+.++|+|++|+++.. .+ ++|.+|++...... +...+.+.. + ..+..++|.|+ |..|.|+.
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~--~~---~~I~v~~i~~~~~~-~~~~~~~~~-~--~~p~~~~~~~d---g~~l~va~~ 293 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDR--TA---SLISVFSVSEDGSV-LSFEGHQPT-E--TQPRGFNIDHS---GKYLIAAGQ 293 (330)
T ss_pred CCccceeEEECCCCCEEEEecC--CC---CeEEEEEEeCCCCe-EEEeEEEec-c--ccCCceEECCC---CCEEEEEEc
Confidence 1123456899999999999622 22 56999999653211 112222221 1 23557888886 66666655
Q ss_pred eCceEEEEecccc
Q 014302 410 SSGFCCTYPLIFR 422 (427)
Q Consensus 410 ~~g~i~~~~~~~~ 422 (427)
.++.|.+|.+-..
T Consensus 294 ~~~~v~v~~~~~~ 306 (330)
T PRK11028 294 KSHHISVYEIDGE 306 (330)
T ss_pred cCCcEEEEEEcCC
Confidence 4889999987543
No 143
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.1e-14 Score=122.85 Aligned_cols=268 Identities=16% Similarity=0.240 Sum_probs=167.6
Q ss_pred ceeeeEEcC--CC-CEEEEEeC----CCeEEEEEccCCCCcce-eeccCCcCCeeEEEEccCCC----ceEEEecCCeEE
Q 014302 101 DLQGVSWHQ--HK-HIVAFISG----STQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC 168 (427)
Q Consensus 101 ~V~~l~~sp--~g-~~lat~~~----d~~v~vwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~----~~la~g~~~~i~ 168 (427)
.+.++.|+- +. .+||.|+. ...|.|-.++....+.. ...+.|.-+++.+.|.|+.. .+||+++ ..++
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~LR 124 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-DFLR 124 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-CeEE
Confidence 578889983 33 38999975 46777766665433222 22356889999999999873 3666655 5699
Q ss_pred EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccC------------------
Q 014302 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLG------------------ 229 (427)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~------------------ 229 (427)
+|.+..+......... +...-..+...+++++.|+. |-+++.+.
T Consensus 125 lWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred EEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 9999732221111000 00001112345666777765 33332211
Q ss_pred --ceEEeccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCccccc----cCCCCeeEEEECCCC-CEEEEEEcCCce
Q 014302 230 --TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEG-RMILLAFAGSLT 301 (427)
Q Consensus 230 --~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg-~~l~~~~~~~~~ 301 (427)
+.+-.|...|+.++|...+. .+|+.+.||+||++|++..+..+.. ....+...++|++.. +++|+-..+...
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 22345889999999999776 4558999999999999988775443 235678899999865 455655555556
Q ss_pred eeeeeeCCC---CCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCce-EEEe
Q 014302 302 LGSIHFASK---PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPL-ISLS 376 (427)
Q Consensus 302 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~ 376 (427)
+.++++... ...+.+|.. .|+.++|.|... .|++ +++| ..+.+||++.... -...
T Consensus 268 V~iLDiR~P~tpva~L~~H~a--------------~VNgIaWaPhS~~hict---aGDD---~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQA--------------SVNGIAWAPHSSSHICT---AGDD---CQALIWDLQQMPRENGED 327 (364)
T ss_pred EEEEEecCCCcceehhhcCcc--------------cccceEecCCCCceeee---cCCc---ceEEEEecccccccCCCC
Confidence 777777653 124444444 889999998765 4555 6666 5699999987544 1111
Q ss_pred eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeC
Q 014302 377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 411 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~ 411 (427)
|.=-. .++.+ ...++|.+. ++..+++++..
T Consensus 328 Pilay-~a~~E--VNqi~Ws~~--~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAY-TAGGE--VNQIQWSSS--QPDWIAICFGK 357 (364)
T ss_pred chhhh-hccce--eeeeeeccc--CCCEEEEEecC
Confidence 21111 12222 447788765 56788888543
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.1e-14 Score=134.02 Aligned_cols=243 Identities=14% Similarity=0.195 Sum_probs=163.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|++|||+.+.+.||.+-.||.|.+|++...-.....+.-+....|.+++|++.+ +++.++..+.|.-||+.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~------- 98 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH------- 98 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecc-------
Confidence 7999999999999999999999999999886333333444566789999999666 89999999999999997
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
++ +... .+....+.|++++.+|.+..++.|++||.+
T Consensus 99 --~l----------------k~~~--------------------------~~d~~gg~IWsiai~p~~~~l~IgcddGvl 134 (691)
T KOG2048|consen 99 --TL----------------KQKY--------------------------NIDSNGGAIWSIAINPENTILAIGCDDGVL 134 (691)
T ss_pred --cC----------------ceeE--------------------------EecCCCcceeEEEeCCccceEEeecCCceE
Confidence 11 1111 112235689999999999999999999977
Q ss_pred EEEEcCCCCcc---ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc-cccceeeccCCcee
Q 014302 261 YLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD-LPDIVSLTGSQGIE 336 (427)
Q Consensus 261 ~iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 336 (427)
..++...++.. .+.-.++.+.+++|+|++..++.|+.++ .|++|+....... .-+.+.++ +.+ ....-|+
T Consensus 135 ~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~t~-~~~~~~~d~l~k----~~~~iVW 208 (691)
T KOG2048|consen 135 YDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQTL-HIITMQLDRLSK----REPTIVW 208 (691)
T ss_pred EEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCCCceE-EEeeeccccccc----CCceEEE
Confidence 77777666542 1224568999999999999998775554 6777766654211 11111010 000 0111477
Q ss_pred EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302 337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 416 (427)
Q Consensus 337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~ 416 (427)
+|.|-.++ .||+ |... |+|.+||...+.+++... .....++|++-.++ +.-+-++..|++|..
T Consensus 209 Sv~~Lrd~-tI~s---gDS~---G~V~FWd~~~gTLiqS~~-------~h~adVl~Lav~~~---~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 209 SVLFLRDS-TIAS---GDSA---GTVTFWDSIFGTLIQSHS-------CHDADVLALAVADN---EDRVFSAGVDPKIIQ 271 (691)
T ss_pred EEEEeecC-cEEE---ecCC---ceEEEEcccCcchhhhhh-------hhhcceeEEEEcCC---CCeEEEccCCCceEE
Confidence 88777666 4555 3333 889999998887653321 12223556666554 333444447777766
Q ss_pred Ee
Q 014302 417 YP 418 (427)
Q Consensus 417 ~~ 418 (427)
|.
T Consensus 272 ~~ 273 (691)
T KOG2048|consen 272 YS 273 (691)
T ss_pred EE
Confidence 64
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=7.8e-15 Score=123.93 Aligned_cols=158 Identities=15% Similarity=0.266 Sum_probs=122.5
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCC--CceEEEecC-CeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCK-GGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~~la~g~~-~~i~iw~~~~~~ 176 (427)
.|.++.|=|-.. .+.+++.|.+++|||.++. .....+...+.|++-+|||-. ..++|+|.+ -.|++-|+.
T Consensus 103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl---Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~--- 176 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL---QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA--- 176 (397)
T ss_pred eeeeeEEeeecCceeecccccceEEEeecccc---eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc---
Confidence 899999999665 7778899999999999887 334445667789999999854 247888876 678999987
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEe
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAK 255 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~ 255 (427)
.| . ....+.+|.++|.++.|+|...+++ +|+
T Consensus 177 ------SG----------------s--------------------------~sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 177 ------SG----------------S--------------------------FSHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred ------CC----------------c--------------------------ceeeeccccCceEEEEeccCceeEEEecC
Confidence 22 0 1124667889999999999999877 999
Q ss_pred cCCcEEEEEcCCCC-c---------------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302 256 FDGTFYLWETNTWT-S---------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 313 (427)
Q Consensus 256 ~dg~v~iwd~~~~~-~---------------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~ 313 (427)
.||.|++||++.-. + ..-..|.+.+..++|+.||.++++.+.++ .++.|+..+...+
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-RIRVWNMESGRNT 281 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-ceEEeecccCccc
Confidence 99999999998541 1 11227889999999999999999876666 7778877765443
No 146
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2e-14 Score=122.66 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=140.4
Q ss_pred ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.|+++.|.++-. .|++|+.||.|.+|+...- .......+|.+.|+.++.+|.++..|++|.|+.+++|++-
T Consensus 85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV----- 157 (362)
T KOG0294|consen 85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV----- 157 (362)
T ss_pred ceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh-----
Confidence 899999999876 9999999999999997765 6667777899999999999999878999999999999986
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
.| ..-.+ .+ .....+.+.|+|.|.+++.+. ..
T Consensus 158 ----~G--------------r~a~v----------------------------~~-L~~~at~v~w~~~Gd~F~v~~-~~ 189 (362)
T KOG0294|consen 158 ----RG--------------RVAFV----------------------------LN-LKNKATLVSWSPQGDHFVVSG-RN 189 (362)
T ss_pred ----cC--------------cccee----------------------------ec-cCCcceeeEEcCCCCEEEEEe-cc
Confidence 11 00000 00 111234488999999988777 45
Q ss_pred cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCcee
Q 014302 259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIE 336 (427)
Q Consensus 259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 336 (427)
.|-+|.+.+-...........+.++.|-. +..|++|..+. .+..++-.+..+ .+.+|.. +|-
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~-~i~~~D~ds~~~~~~~~AH~~--------------RVK 253 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNE-WISLKDTDSDTPLTEFLAHEN--------------RVK 253 (362)
T ss_pred EEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCc-eEEEeccCCCccceeeecchh--------------hee
Confidence 68899887766544444445667777754 66777765554 666666665322 3334443 778
Q ss_pred EEEE--CCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 337 KIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 337 ~v~~--sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
++.+ .|++.+|++ .+.| |.|+|||+...
T Consensus 254 ~i~~~~~~~~~~lvT---aSSD---G~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVT---ASSD---GFIKVWDIDME 283 (362)
T ss_pred eeEEEecCCceEEEE---eccC---ceEEEEEcccc
Confidence 8773 488889988 5666 77999999775
No 147
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=5.9e-15 Score=125.85 Aligned_cols=204 Identities=14% Similarity=0.241 Sum_probs=150.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--------------------------------------CCcceeeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------------------------------------GKDACILTSDS 142 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--------------------------------------~~~~~~~~~~~ 142 (427)
.|+++.|++.+.++++++.|++..||..... ...+.....+|
T Consensus 192 SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH 271 (481)
T KOG0300|consen 192 SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH 271 (481)
T ss_pred ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence 8999999999999999999999999973110 01122334568
Q ss_pred cCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC
Q 014302 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (427)
Q Consensus 143 ~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 222 (427)
...|.+..|-..|++++..+.|.+..+||++ ++ ..+.
T Consensus 272 ~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE---------tg----------------e~v~------------------ 308 (481)
T KOG0300|consen 272 RAVVSACDWLAGGQQMVTASWDRTANLWDVE---------TG----------------EVVN------------------ 308 (481)
T ss_pred ccceEehhhhcCcceeeeeeccccceeeeec---------cC----------------ceec------------------
Confidence 8899999999888777777777999999998 22 2233
Q ss_pred CCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 223 GRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 223 g~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
.+.+|....+.++-+|..+++++++.|-+.++||.+..-. ..+.+|...|+++.|..|.+. + .++++.
T Consensus 309 --------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-V-SgSDDr 378 (481)
T KOG0300|consen 309 --------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-V-SGSDDR 378 (481)
T ss_pred --------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-e-ecCCCc
Confidence 2334566677778889999999999999999999984332 345599999999999987654 3 457777
Q ss_pred eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
++++|++.+....+.. +....+++.++.+..+..+|. -.+. ..|++||++...+..+
T Consensus 379 TvKvWdLrNMRsplAT------------IRtdS~~NRvavs~g~~iIAi---PhDN---RqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLAT------------IRTDSPANRVAVSKGHPIIAI---PHDN---RQVRLFDLNGNRLARL 435 (481)
T ss_pred eEEEeeeccccCccee------------eecCCccceeEeecCCceEEe---ccCC---ceEEEEecCCCccccC
Confidence 9999999886432211 112237888999988888887 3333 4599999987665433
No 148
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=139.31 Aligned_cols=227 Identities=16% Similarity=0.167 Sum_probs=164.2
Q ss_pred CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 176 (427)
Q Consensus 99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~ 176 (427)
.+.+.+..|+ +.++++++.|.++++|+.... ..... ..+|.+.|.++++.. +..+|.+|+ |.++++||+.
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~--- 279 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCS--- 279 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecC---
Confidence 4478889998 668889999999999998877 44444 678999999999987 446666665 7999999987
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
++ .+...+. +|...+.++.. ....+++|+.
T Consensus 280 ------sg----------------~C~~~l~--------------------------gh~stv~~~~~--~~~~~~sgs~ 309 (537)
T KOG0274|consen 280 ------TG----------------ECTHSLQ--------------------------GHTSSVRCLTI--DPFLLVSGSR 309 (537)
T ss_pred ------CC----------------cEEEEec--------------------------CCCceEEEEEc--cCceEeeccC
Confidence 22 3444333 34455555554 3446778999
Q ss_pred CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCC
Q 014302 257 DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQ 333 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 333 (427)
|.+|++|++.++.+.... +|...|.++..+ +.++++++.++ .+.+|++...+ ..+.+|..
T Consensus 310 D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~-------------- 372 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTG-------------- 372 (537)
T ss_pred CceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcc--------------
Confidence 999999999999886666 599999999998 77887765555 88888887532 24445544
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
.|.++.+.+. ..+++ |+-| ++|++||+.+. .++. .+.+..... ..+.+ .+..|.-+..||
T Consensus 373 ~V~sl~~~~~-~~~~S---gs~D---~~IkvWdl~~~~~c~~-----tl~~h~~~v--~~l~~-----~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 373 RVYSLIVDSE-NRLLS---GSLD---TTIKVWDLRTKRKCIH-----TLQGHTSLV--SSLLL-----RDNFLVSSSADG 433 (537)
T ss_pred eEEEEEecCc-ceEEe---eeec---cceEeecCCchhhhhh-----hhcCCcccc--ccccc-----ccceeEeccccc
Confidence 8899988775 77767 6766 67999999988 5541 122222221 12222 255788888999
Q ss_pred eEEEEec
Q 014302 413 FCCTYPL 419 (427)
Q Consensus 413 ~i~~~~~ 419 (427)
.|.+|++
T Consensus 434 ~Ik~WD~ 440 (537)
T KOG0274|consen 434 TIKLWDA 440 (537)
T ss_pred cEEEeec
Confidence 9999974
No 149
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=4.6e-14 Score=120.69 Aligned_cols=215 Identities=16% Similarity=0.251 Sum_probs=155.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~ 179 (427)
+|+|.+|++|++.+|++-.+..|.||...... .+.......|...|+.+.|+|.+++++.++.|..-.+|....
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~----- 86 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS----- 86 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC-----
Confidence 68999999999999999999999999988774 566677778999999999999998888888888889998730
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
+..|++.- ++..+....+++.|+|.++.+|+|+....
T Consensus 87 -----------------~~~Wkptl--------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~ 123 (361)
T KOG1523|consen 87 -----------------GGTWKPTL--------------------------VLLRINRAATCVKWSPKENKFAVGSGARL 123 (361)
T ss_pred -----------------CCeeccce--------------------------eEEEeccceeeEeecCcCceEEeccCccE
Confidence 11222222 34456778999999999999999999999
Q ss_pred EEEEEcCCCCc-----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC-----CC-CCcccccccccccccee
Q 014302 260 FYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-----KP-PSLDAHLLPVDLPDIVS 328 (427)
Q Consensus 260 v~iwd~~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~-----~~-~~~~~~~~~~~~~~~~~ 328 (427)
|-||=.+.... .....+...|.++.|+|++-.|+.|+.+. ..+++..+- ++ +.-.+..+|.-.-....
T Consensus 124 isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 124 ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred EEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 99987765442 12236778899999999988887665444 555554332 21 11122222221000111
Q ss_pred eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
-..++.|..+.|+|+|..||- .+.| ++|.+-|....
T Consensus 203 ~~~ggwvh~v~fs~sG~~law---v~Hd---s~v~~~da~~p 238 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAW---VGHD---STVSFVDAAGP 238 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeE---ecCC---CceEEeecCCC
Confidence 145668999999999999998 4444 56888887554
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.65 E-value=1.9e-15 Score=136.17 Aligned_cols=193 Identities=11% Similarity=0.133 Sum_probs=149.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
..++++.+||.+..+++..||.|.|||+... ..+....+|.+.+.||..++||.++-..|-|++|+.||+.
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr------- 581 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR------- 581 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhh-------
Confidence 5677899999999999999999999999887 5666778999999999999999777777788999999997
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
.+ .+ +..| .....|.++..+|++.+|++|-.++.|
T Consensus 582 --eg------------------rq-lqqh------------------------dF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 582 --EG------------------RQ-LQQH------------------------DFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred --hh------------------hh-hhhh------------------------hhhhhheecccCCCccceeeecccCcE
Confidence 11 11 1111 023467888899999999999999999
Q ss_pred EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302 261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 340 (427)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 340 (427)
.|......+...+..|...|.++.|++.|+++++++.++ .+..|+..-... +........|.++..
T Consensus 617 evlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn-lLnawrtPyGas-------------iFqskE~SsVlsCDI 682 (705)
T KOG0639|consen 617 EVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPYGAS-------------IFQSKESSSVLSCDI 682 (705)
T ss_pred EEEecCCccceeecccccEEEEEEecccCceeeecCchh-hhhhccCccccc-------------eeeccccCcceeeee
Confidence 998887777777778999999999999999999876555 444443332211 111223348899999
Q ss_pred CCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 341 DASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 341 sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
|-|.+|+++ |+.| +...||.+
T Consensus 683 S~ddkyIVT---GSGd---kkATVYeV 703 (705)
T KOG0639|consen 683 SFDDKYIVT---GSGD---KKATVYEV 703 (705)
T ss_pred ccCceEEEe---cCCC---cceEEEEE
Confidence 999999988 7777 44667764
No 151
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.65 E-value=8.5e-15 Score=139.51 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=150.8
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~ 176 (427)
..+++++.++.|++.+.|+..|+|-+|+++.+ .....+ ..|.+.|++++....+..+++++.+|-+++|+..
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~--- 523 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK--- 523 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccC--eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC---
Confidence 37899999999999999999999999999988 222222 3699999999998777556666677999999997
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
.. .....++ ....+..+..+.....++.+..
T Consensus 524 ------~k----------------~l~~~l~---------------------------l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 524 ------KK----------------VLKKSLR---------------------------LGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ------Cc----------------ceeeeec---------------------------cCCCcceeeeeehhhhhhhhcC
Confidence 00 1111111 1235666777778888889999
Q ss_pred CCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302 257 DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 335 (427)
Q Consensus 257 dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 335 (427)
|-.|+++|+.+.+. ..+.+|...|++++|||||++|++++.+. +|+.|++..... ++ .+....+.
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-tIr~wDlpt~~l-ID------------~~~vd~~~ 620 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-TIRTWDLPTGTL-ID------------GLLVDSPC 620 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-cEEEEeccCcce-ee------------eEecCCcc
Confidence 99999999998887 45669999999999999999999876544 888888877521 11 11223378
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
.++.|||+|.+||++..+... |++|--++
T Consensus 621 ~sls~SPngD~LAT~Hvd~~g-----IylWsNks 649 (910)
T KOG1539|consen 621 TSLSFSPNGDFLATVHVDQNG-----IYLWSNKS 649 (910)
T ss_pred eeeEECCCCCEEEEEEecCce-----EEEEEchh
Confidence 999999999999998777665 99997543
No 152
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=5e-15 Score=134.50 Aligned_cols=182 Identities=21% Similarity=0.329 Sum_probs=135.2
Q ss_pred CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCccccccc
Q 014302 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA 191 (427)
Q Consensus 112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 191 (427)
..++.++.||.+.|- +..++ .......|.+.+.+-.|+|||.-+|.+|.||.|++|.-. |
T Consensus 76 d~~~i~s~DGkf~il--~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------G------- 135 (737)
T KOG1524|consen 76 DTLLICSNDGRFVIL--NKSAR-VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------G------- 135 (737)
T ss_pred ceEEEEcCCceEEEe--cccch-hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----------c-------
Confidence 378888899999884 43322 334556799999999999999889999999999999864 1
Q ss_pred ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCc--eEEeccCCeEEEEEccCCCEEEEEe
Q 014302 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGT--PIRRGFGGLSILKWSPTGDYFFAAK 255 (427)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~--~~~~~~~~v~~~~~sp~g~~l~~~~ 255 (427)
.++..-.....+|.|++|.|+.+-+. ... ..+.|.+-|.++.|++.+..+++|+
T Consensus 136 ----------MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 136 ----------MLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred ----------hHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC
Confidence 11111122477899999999876421 111 2456899999999999999999999
Q ss_pred cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302 256 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 335 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 335 (427)
+|-..+|||-..........|..+|++++|.|+ +.++.++ .. ..++... .-+.|
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-~n----t~R~~~p--------------------~~GSi 259 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-YN----TARFSSP--------------------RVGSI 259 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeeccc-cceeeee-ee----eeeecCC--------------------Cccce
Confidence 999999999765555555589999999999999 4444443 22 2222221 12488
Q ss_pred eEEEECCCCCEEEE
Q 014302 336 EKIAWDASGERLAV 349 (427)
Q Consensus 336 ~~v~~sp~g~~La~ 349 (427)
..++||+||..+++
T Consensus 260 fnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 260 FNLSWSADGTQATC 273 (737)
T ss_pred EEEEEcCCCceeec
Confidence 99999999999998
No 153
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=2.1e-14 Score=119.52 Aligned_cols=283 Identities=15% Similarity=0.127 Sum_probs=169.2
Q ss_pred CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
.|+.| .|+++.|..+++ |.+|..-|.|++|++.+... ...+.-.+...|+.+.--|++ .+..-|.+..+.+|++.
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~-~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD-LPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIA 85 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCcc-chhhhhhccceeeceeecCCc-chhhcCCCceEEEEEcc
Confidence 34444 789999988775 78899999999999998722 222332467789999988986 78888889999999997
Q ss_pred CCCCccccccC--cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-C----cccCc---------eEEeccC
Q 014302 174 YPGNAASVRSG--AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-F----PGLGT---------PIRRGFG 237 (427)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~----l~~~~---------~~~~~~~ 237 (427)
... -...+.- ..-.+..++--.+ ......+.+.|+.. . ...+. .-....+
T Consensus 86 ~s~-~i~i~Si~~nslgFCrfSl~~~-------------~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 86 YSA-FISIHSIVVNSLGFCRFSLVKK-------------PKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred Ccc-eEEEeeeeccccccccceeccC-------------CCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 311 0000000 0000000000000 00001111111100 0 00000 0111235
Q ss_pred CeEEEEEcc-CCCE--EEEEecCCcEEEEEcCCCCc-----------cccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302 238 GLSILKWSP-TGDY--FFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 303 (427)
Q Consensus 238 ~v~~~~~sp-~g~~--l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~ 303 (427)
.+.+..|.. ++.+ |++|-++|.|.+||+.++.. .....|..+|.++.+.+.-..=+.++-++ .+.
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~ 230 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLV 230 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cce
Confidence 566666543 4443 34888999999999988632 12237899999999986443333443333 455
Q ss_pred eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeC
Q 014302 304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 383 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~ 383 (427)
.|.+......+ .+.....+.+. .|..+..-||++.||+ ++.| +.|+||..++...+.+. .-
T Consensus 231 ~~Sl~~s~gsl-------q~~~e~~lknp-Gv~gvrIRpD~KIlAT---AGWD---~RiRVyswrtl~pLAVL-----ky 291 (323)
T KOG0322|consen 231 MYSLNHSTGSL-------QIRKEITLKNP-GVSGVRIRPDGKILAT---AGWD---HRIRVYSWRTLNPLAVL-----KY 291 (323)
T ss_pred eeeeccccCcc-------cccceEEecCC-CccceEEccCCcEEee---cccC---CcEEEEEeccCCchhhh-----hh
Confidence 55554432111 11111112222 6888999999999999 7777 66999999887655322 11
Q ss_pred CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 384 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 384 ~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
......+++|+|+ -.++|.+..|++|.+|.+|
T Consensus 292 --Hsagvn~vAfspd---~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 292 --HSAGVNAVAFSPD---CELMAAASKDARISLWKLY 323 (323)
T ss_pred --hhcceeEEEeCCC---CchhhhccCCceEEeeecC
Confidence 2234679999997 4689999999999999998
No 154
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=2.6e-15 Score=130.14 Aligned_cols=196 Identities=13% Similarity=0.199 Sum_probs=129.6
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccc
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~ 180 (427)
+..+.-+..+..+||++.+ |.|||.... .+.....--...|.++.|+|-...+|+++ +|++|.|||+.
T Consensus 150 ~~gIdh~~~~~~FaTcGe~--i~IWD~~R~--~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R------- 218 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGEQ--IDIWDEQRD--NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR------- 218 (433)
T ss_pred ccccccccccccccccCce--eeecccccC--CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc-------
Confidence 3334333334444444332 444554433 22222223345788999999888888887 77999999997
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
. ..++..+. ..-....++|+|.+-.++++++|..+
T Consensus 219 --~---------------------------~~Pl~KVi----------------~~mRTN~IswnPeafnF~~a~ED~nl 253 (433)
T KOG0268|consen 219 --Q---------------------------ASPLKKVI----------------LTMRTNTICWNPEAFNFVAANEDHNL 253 (433)
T ss_pred --c---------------------------CCccceee----------------eeccccceecCccccceeeccccccc
Confidence 1 11111100 01234578899976677799999999
Q ss_pred EEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302 261 YLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI 338 (427)
Q Consensus 261 ~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 338 (427)
+.||++.... ....+|.+.|.++.|||-|+-+++|+ -+.+|+++........---|.. --+.|.+|
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs-yDksIRIf~~~~~~SRdiYhtk-----------RMq~V~~V 321 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS-YDKSIRIFPVNHGHSRDIYHTK-----------RMQHVFCV 321 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhcccc-ccceEEEeecCCCcchhhhhHh-----------hhheeeEE
Confidence 9999998765 34448999999999999999999775 4547877777664211000111 11378999
Q ss_pred EECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
.||-|.+|+++ |++| +.|++|.....+
T Consensus 322 k~S~Dskyi~S---GSdd---~nvRlWka~Ase 348 (433)
T KOG0268|consen 322 KYSMDSKYIIS---GSDD---GNVRLWKAKASE 348 (433)
T ss_pred EEeccccEEEe---cCCC---cceeeeecchhh
Confidence 99999999988 8888 559999986544
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.6e-14 Score=121.03 Aligned_cols=200 Identities=22% Similarity=0.299 Sum_probs=139.8
Q ss_pred eeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC
Q 014302 146 VKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (427)
Q Consensus 146 v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 224 (427)
..|+.|++.| .+||+|+. |.+.|||+. +. .
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~---------T~----------------~----------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFD---------TF----------------R----------------------- 56 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEcc---------cc----------------c-----------------------
Confidence 7899999999 89999976 889999997 11 0
Q ss_pred CcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302 225 FPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 304 (427)
Q Consensus 225 ~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~ 304 (427)
.+..+..|..+|.+++||+||+.|++++.|..|.+||+..+.+....-..++|..+.|+|-.+..+.++--...-.+
T Consensus 57 ---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~v 133 (405)
T KOG1273|consen 57 ---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVV 133 (405)
T ss_pred ---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEE
Confidence 12245567889999999999999999999999999999999987766788999999999976655555433333455
Q ss_pred eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
+.+.+....+ .|.+-+. .+ ........|++.|+++.+ |... |.+.++|..+.+++...-...+
T Consensus 134 i~~s~~~h~~----Lp~d~d~--dl--n~sas~~~fdr~g~yIit---GtsK---Gkllv~~a~t~e~vas~rits~--- 196 (405)
T KOG1273|consen 134 IDFSDPKHSV----LPKDDDG--DL--NSSASHGVFDRRGKYIIT---GTSK---GKLLVYDAETLECVASFRITSV--- 196 (405)
T ss_pred EEecCCceee----ccCCCcc--cc--ccccccccccCCCCEEEE---ecCc---ceEEEEecchheeeeeeeechh---
Confidence 6666532111 1110000 00 002233479999999988 7776 8899999999887744322211
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
...+.+-+++ .|..|++-++|-.|..|++-
T Consensus 197 -~~IK~I~~s~-----~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 197 -QAIKQIIVSR-----KGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred -eeeeEEEEec-----cCcEEEEecCCceEEEEehh
Confidence 1222222322 37789999999999999864
No 156
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-14 Score=118.60 Aligned_cols=186 Identities=17% Similarity=0.299 Sum_probs=133.5
Q ss_pred CCCC--ceeeeEEcC--CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEe-cCCeEEEE
Q 014302 97 LPEV--DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVG-CKGGICIW 170 (427)
Q Consensus 97 l~~~--~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g-~~~~i~iw 170 (427)
|.+| +|..++|.. .|.+||+++.||.|.||.-..+..........|...|++++|.|.+. .+|+++ +||.|.|.
T Consensus 52 L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 52 LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred ecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 3555 899999955 78999999999999999988775555555667999999999999753 356665 56999999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC---CCC-----------cccC-------
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRF-----------PGLG------- 229 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd---g~~-----------l~~~------- 229 (427)
+.+..+ .+........| ...|++++|.|- |.. ++++
T Consensus 132 ~~~~~g----------------------~w~t~ki~~aH-~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 132 TYDSSG----------------------GWTTSKIVFAH-EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred EEcCCC----------------------Cccchhhhhcc-ccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 887221 12222223333 677888888885 433 2221
Q ss_pred ------------ceEEeccCCeEEEEEccCC----CEEEEEecCCcEEEEEcCCCCc----cccccCCCCeeEEEECCCC
Q 014302 230 ------------TPIRRGFGGLSILKWSPTG----DYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG 289 (427)
Q Consensus 230 ------------~~~~~~~~~v~~~~~sp~g----~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg 289 (427)
..+..|.+-|+.++|.|.- .+||++++||+|.||..+.... ..+......+..+.||..|
T Consensus 189 iW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 189 IWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred eeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc
Confidence 1256688999999999965 3789999999999998762211 1222556779999999999
Q ss_pred CEEEEEEcCCceeeeee
Q 014302 290 RMILLAFAGSLTLGSIH 306 (427)
Q Consensus 290 ~~l~~~~~~~~~i~~~~ 306 (427)
+.|++++.+. .+.+|.
T Consensus 269 n~LaVs~GdN-kvtlwk 284 (299)
T KOG1332|consen 269 NILAVSGGDN-KVTLWK 284 (299)
T ss_pred cEEEEecCCc-EEEEEE
Confidence 9999876555 555443
No 157
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=6e-14 Score=120.43 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=54.5
Q ss_pred ceeeeEEcCCCCEEE-EEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~ 173 (427)
.|.-+.|.-|..+++ ....++.|++|++..... ......-..++.+++|||||..+|.++. +-.|.+|.+.
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~ 122 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN 122 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec
Confidence 677889999888655 457788999999988733 3333455678999999999977766654 4778899987
No 158
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.6e-14 Score=134.19 Aligned_cols=193 Identities=16% Similarity=0.129 Sum_probs=145.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEE-ccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-RPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~-sp~~~~~la~g~-~~~i~iw~~~~~~~~ 178 (427)
.|+.+...-+|+.|++++.|-+|++|+......-.......|.+.|.|++. .++. .++|+|+ |+.|.+||++..-.
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~- 152 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA- 152 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch-
Confidence 788889999999999999999999999887743344555679999999999 6666 6666665 58999999982111
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEE
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSI 241 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~ 241 (427)
..+.+. +......+.......|++++-++.|..+..|. .+++|...|..
T Consensus 153 ~l~~s~--------------n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 153 TLVASF--------------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred hhhhhc--------------cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 000000 00111222212377888888888887655442 26679999999
Q ss_pred EEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
+..++||..+++++.||+|++||+...+| ..+..|+..|.++.-+|+=.++++|+. ++.|+.-++.+.
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNP 287 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC-CCcEEecccCCc
Confidence 99999999999999999999999998888 455689989999999998888887654 447777777763
No 159
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=2.7e-13 Score=115.15 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=139.7
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEecC-CeEEEEeccCCCC
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGN 177 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~-~~i~iw~~~~~~~ 177 (427)
.+|.+++|+.||..+++|+.|+.+++||+.++ .......|.++|..+.|-+... ..|++|+. ++++.||..
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R---- 145 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR---- 145 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCC---CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC----
Confidence 38999999999999999999999999999988 4455567999999999987652 37777764 999999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
...++..+. ....++++.. -...++++..+
T Consensus 146 ---------------------~~~pv~t~~---------------------------LPeRvYa~Dv--~~pm~vVata~ 175 (347)
T KOG0647|consen 146 ---------------------SSNPVATLQ---------------------------LPERVYAADV--LYPMAVVATAE 175 (347)
T ss_pred ---------------------CCCeeeeee---------------------------ccceeeehhc--cCceeEEEecC
Confidence 101111111 0123444432 23467788899
Q ss_pred CcEEEEEcCCCCcccc---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CC--Cccccccccccccceeec
Q 014302 258 GTFYLWETNTWTSEPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PP--SLDAHLLPVDLPDIVSLT 330 (427)
Q Consensus 258 g~v~iwd~~~~~~~~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~ 330 (427)
+.|.+|+++....+.. ...+..+.+++..+|....+.|+-++ .+.+-.+... .. +++.|........
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkCHR~~~~~~~----- 249 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKCHRSTNSVND----- 249 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEEeccCCCCCC-----
Confidence 9999999987654221 14566788998888888777776555 4444455443 11 3344432110000
Q ss_pred cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
.--.|++++|+|.-..|++ .+.| |+..+||-.....
T Consensus 250 ~VYaVNsi~FhP~hgtlvT---aGsD---Gtf~FWDkdar~k 285 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVT---AGSD---GTFSFWDKDARTK 285 (347)
T ss_pred ceEEecceEeecccceEEE---ecCC---ceEEEecchhhhh
Confidence 0116899999999889988 4555 8899999865443
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=129.16 Aligned_cols=211 Identities=18% Similarity=0.365 Sum_probs=148.2
Q ss_pred CcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC
Q 014302 142 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (427)
Q Consensus 142 ~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (427)
....|.++|++.++ +.||++. ++.|.||++. ..|.+...+.++
T Consensus 24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~------------------------~~w~~~~vi~g~----------- 67 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLS------------------------NNWFLEPVIHGP----------- 67 (691)
T ss_pred eccceEEEEEeccC-CceeeeccCCcEEEEccC------------------------CCceeeEEEecC-----------
Confidence 45689999999988 5677775 4999999997 134444444433
Q ss_pred CCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 221 PDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 221 pdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
....|.+++|+ ++..|++.+.+|.|.-||+.+.+.. ......+.|.+++.+|.+..++.++.++
T Consensus 68 --------------~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG 132 (691)
T KOG2048|consen 68 --------------EDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG 132 (691)
T ss_pred --------------CCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc
Confidence 23467778888 5557888888999999999998874 4447788999999999999999886555
Q ss_pred ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee
Q 014302 300 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 379 (427)
Q Consensus 300 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~ 379 (427)
.++.+.......+++..+ ....++|.+++|+|++..||. |+.| |.|++||+..+..+.+...+
T Consensus 133 -vl~~~s~~p~~I~~~r~l----------~rq~sRvLslsw~~~~~~i~~---Gs~D---g~Iriwd~~~~~t~~~~~~~ 195 (691)
T KOG2048|consen 133 -VLYDFSIGPDKITYKRSL----------MRQKSRVLSLSWNPTGTKIAG---GSID---GVIRIWDVKSGQTLHIITMQ 195 (691)
T ss_pred -eEEEEecCCceEEEEeec----------ccccceEEEEEecCCccEEEe---cccC---ceEEEEEcCCCceEEEeeec
Confidence 666665555432221111 112458999999999999988 8888 88999999988766433222
Q ss_pred eeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302 380 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 423 (427)
Q Consensus 380 ~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~ 423 (427)
+- +..... .++.|.-.|-...+++.|-+.|.|+||+..+.+
T Consensus 196 ~d-~l~k~~--~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 196 LD-RLSKRE--PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred cc-ccccCC--ceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 22 122211 134444333345678999999999999987754
No 161
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=5.3e-14 Score=120.74 Aligned_cols=252 Identities=15% Similarity=0.297 Sum_probs=159.9
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC----eEEEEeccCC
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG----GICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~----~i~iw~~~~~ 175 (427)
.+.+++|||||+ .|.+...+-.|.||.+.+. ....+ ......+..++|+||| ++.|...+. .+.|....
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~-~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~-- 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLL-PHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCK-- 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEe-cccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhH--
Confidence 788999999997 6667788999999999887 23332 2334467899999999 677666542 22222211
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC------ceEEec-cCCeEEEEEccCC
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------TPIRRG-FGGLSILKWSPTG 248 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------~~~~~~-~~~v~~~~~sp~g 248 (427)
.|..+..++.. ....+.+.|+|||..++.- ..+.-+ .-++..++|+|.+
T Consensus 167 -----------------------~W~ll~~f~~d-T~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 167 -----------------------AWILLKEFKLD-TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN 222 (447)
T ss_pred -----------------------HHHHHHhcCCC-cccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc
Confidence 22333334433 5567799999999987622 111112 3688999999999
Q ss_pred CEEEEEecCCcEEEEEcCCCCc--------------------------------ccc-----------------------
Q 014302 249 DYFFAAKFDGTFYLWETNTWTS--------------------------------EPW----------------------- 273 (427)
Q Consensus 249 ~~l~~~~~dg~v~iwd~~~~~~--------------------------------~~~----------------------- 273 (427)
++|++|+.|+.+|+.+--+++. ..+
T Consensus 223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP 302 (447)
T ss_pred ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence 9999999999988754222110 000
Q ss_pred ------------ccCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302 274 ------------SSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 340 (427)
Q Consensus 274 ------------~~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 340 (427)
....-.+..++||+|..++++-.+.- +.+++|++...+. |. .+....+|....|
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l----~a---------vLiQk~piraf~W 369 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL----HA---------VLIQKHPIRAFEW 369 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh----hh---------hhhhccceeEEEe
Confidence 01123466799999999987532221 4678888776521 11 1122338899999
Q ss_pred CCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 341 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 341 sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
+|....|++|..++ .+++|......++.+.-.|| +...+.|+-. |..++.+..|-
T Consensus 370 dP~~prL~vctg~s------rLY~W~psg~~~V~vP~~GF--------~i~~l~W~~~---g~~i~l~~kDa 424 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKS------RLYFWAPSGPRVVGVPKKGF--------NIQKLQWLQP---GEFIVLCGKDA 424 (447)
T ss_pred CCCCceEEEEcCCc------eEEEEcCCCceEEecCCCCc--------eeeeEEecCC---CcEEEEEcCCc
Confidence 99999999974333 39999987755554433332 2445556543 55555554443
No 162
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=9.9e-14 Score=117.35 Aligned_cols=141 Identities=15% Similarity=0.305 Sum_probs=96.3
Q ss_pred eeeEEcCCCCEEEEEeC----------CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEE
Q 014302 103 QGVSWHQHKHIVAFISG----------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIW 170 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~----------d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw 170 (427)
-.+.|+|+|++|++-.. -+...||.++........+.....+.|.+++|+|+|..++++.+ ...+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999997765422 24566777755533333333344557999999999976655432 3679999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY 250 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~ 250 (427)
+++ . ..+. ..+...+..+.|||+|++
T Consensus 89 d~~---------~-----------------~~i~----------------------------~~~~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 89 DVK---------G-----------------KKIF----------------------------SFGTQPRNTISWSPDGRF 114 (194)
T ss_pred cCc---------c-----------------cEeE----------------------------eecCCCceEEEECCCCCE
Confidence 986 0 0111 112335668999999999
Q ss_pred EEEEec---CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302 251 FFAAKF---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG 298 (427)
Q Consensus 251 l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~ 298 (427)
|++++. .|.|.+||+++.+......|. .+..++|+|||++++++...
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 997764 467999999976665444443 47899999999999987753
No 163
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3e-13 Score=130.47 Aligned_cols=249 Identities=16% Similarity=0.210 Sum_probs=160.1
Q ss_pred eccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC-CCccccc-cCcccccccccCCCCcceeEeehhcccCCCcee
Q 014302 138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVR-SGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 215 (427)
Q Consensus 138 ~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 215 (427)
....|..+.+.++|.|+|..+++++.++.|++|+...+ ..|..+. .+ .....+...++. . +.+.....|.
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s~~--f----~~~s~~~tv~ 79 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYSNH--F----LTGSEQNTVL 79 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecccc--e----EEeeccceEE
Confidence 34578889999999999987888888999999998633 2222222 11 000011111110 0 0000000111
Q ss_pred eeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEE
Q 014302 216 ALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILL 294 (427)
Q Consensus 216 ~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~ 294 (427)
...| |.+. ....+.+..-++++++++.+|+++|.|+.|-.|++.++...... .+.+|.++|.++.|+|++.+||+
T Consensus 80 ~y~f-ps~~---~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv 155 (933)
T KOG1274|consen 80 RYKF-PSGE---EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV 155 (933)
T ss_pred EeeC-CCCC---ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence 1111 1111 11234445668999999999999999999999999999877664 45599999999999999999998
Q ss_pred EEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 295 AFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 295 ~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
... +|.+++|++.+... ++.+-.... .......+..++|+|+|..||+ -+.| +.|++|+..+...
T Consensus 156 ss~-dG~v~iw~~~~~~~~~tl~~v~k~n------~~~~s~i~~~~aW~Pk~g~la~---~~~d---~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 156 SSC-DGKVQIWDLQDGILSKTLTGVDKDN------EFILSRICTRLAWHPKGGTLAV---PPVD---NTVKVYSRKGWEL 222 (933)
T ss_pred Eec-CceEEEEEcccchhhhhcccCCccc------cccccceeeeeeecCCCCeEEe---eccC---CeEEEEccCCcee
Confidence 654 45899999987632 221111111 1111235788999999766666 2333 5699999987665
Q ss_pred EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 373 ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
. ..++.........+++|.|. |.-||.+..+|.|.+|+.
T Consensus 223 ~-----f~Lr~~~~ss~~~~~~wsPn---G~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 223 Q-----FKLRDKLSSSKFSDLQWSPN---GKYIAASTLDGQILVWNV 261 (933)
T ss_pred h-----eeecccccccceEEEEEcCC---CcEEeeeccCCcEEEEec
Confidence 3 12222222233668999997 888999999999999984
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-13 Score=123.52 Aligned_cols=253 Identities=17% Similarity=0.168 Sum_probs=163.9
Q ss_pred EEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE--ecCCeEEEEeccCCCCccccccCccccccccc
Q 014302 116 FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV--GCKGGICIWAPSYPGNAASVRSGAASFLGALS 193 (427)
Q Consensus 116 t~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~--g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 193 (427)
.++....++|||+...........+.....+.++.|+... .+++. +++..+++|.-+ +. ++
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-~lvvas~~gdk~~~~~~K~--g~-----~~--------- 69 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-FLVVASMAGDKVMRIKEKD--GK-----TP--------- 69 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccc-eEEEeecCCceeEEEeccc--CC-----CC---------
Confidence 3444557899999887444444433334459999999776 33322 244667788654 11 00
Q ss_pred CCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------ceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------TPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
++..+..+.+.....|.+..++ .++..+ ..++.|...|+++.+.-...|||+++.
T Consensus 70 -----~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~ 141 (673)
T KOG4378|consen 70 -----EVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD 141 (673)
T ss_pred -----ccceeeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc
Confidence 1111111111111112222221 111111 224568889999999999999999999
Q ss_pred CCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302 257 DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
.|.|.|..+.++...... .....|.-+.|+|..++|+...+++|.+.+|++....+.+.. ...|+.+
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-----------~~~HsAP 210 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-----------SEAHSAP 210 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-----------hhhccCC
Confidence 999999999988875443 334556789999999999998899989999988876443211 1113346
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 414 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i 414 (427)
...++|+|....|.++ -+-| +.|.+||+.+....... .. +. -...++|.+. |..|++|.+.|+|
T Consensus 211 ~~gicfspsne~l~vs--VG~D---kki~~yD~~s~~s~~~l----~y---~~-Plstvaf~~~---G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVS--VGYD---KKINIYDIRSQASTDRL----TY---SH-PLSTVAFSEC---GTYLCAGNSKGEL 274 (673)
T ss_pred cCcceecCCccceEEE--eccc---ceEEEeeccccccccee----ee---cC-CcceeeecCC---ceEEEeecCCceE
Confidence 6999999988887775 5555 67999999865543111 11 11 1235778775 9999999999999
Q ss_pred EEEecc
Q 014302 415 CTYPLI 420 (427)
Q Consensus 415 ~~~~~~ 420 (427)
.+|++.
T Consensus 275 i~YD~R 280 (673)
T KOG4378|consen 275 IAYDMR 280 (673)
T ss_pred EEEecc
Confidence 999986
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=3.5e-14 Score=121.74 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=161.3
Q ss_pred ceeeeEEcCC----CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCC
Q 014302 101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~----g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~ 175 (427)
....++|+-+ ..+||.|+.-|.|+|.|+... +....+.+|...|+.+.+.|+..+++.+++. ..|++|+++
T Consensus 91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-- 166 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-- 166 (385)
T ss_pred ceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc--
Confidence 4567778654 348999999999999998877 5556667899999999999998888777754 899999998
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 255 (427)
.-.++..+.+ +.+|.+.|.++.|+++|.+|++++
T Consensus 167 -----------------------~~~Cv~VfGG-----------------------~egHrdeVLSvD~~~~gd~i~ScG 200 (385)
T KOG1034|consen 167 -----------------------TDVCVAVFGG-----------------------VEGHRDEVLSVDFSLDGDRIASCG 200 (385)
T ss_pred -----------------------CCeEEEEecc-----------------------cccccCcEEEEEEcCCCCeeeccC
Confidence 1133332221 345788999999999999999999
Q ss_pred cCCcEEEEEcCCCCcc-------c---------c-------------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 256 FDGTFYLWETNTWTSE-------P---------W-------------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~~-------~---------~-------------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
.|.++++|++...+.. . + .-|...|.++.|- |.++++=+ .++.|..|.
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks-cenaI~~w~ 277 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS-CENAIVCWK 277 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc-cCceEEEEe
Confidence 9999999999843210 0 0 0345555666664 56666543 333666665
Q ss_pred eCCCCCCccccccccccccc--eeec-cCCceeEE--EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeee
Q 014302 307 FASKPPSLDAHLLPVDLPDI--VSLT-GSQGIEKI--AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 381 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~v--~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~ 381 (427)
.......+. ...|-+.... ..+. ....|+-+ +|+|-+++||. |... |.|.+||++..+....+ .+
T Consensus 278 pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~---gnq~---g~v~vwdL~~~ep~~~t---tl 347 (385)
T KOG1034|consen 278 PGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL---GNQS---GKVYVWDLDNNEPPKCT---TL 347 (385)
T ss_pred cchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh---ccCC---CcEEEEECCCCCCccCc---eE
Confidence 432111111 0111111111 0111 11245554 55688999988 6655 77999999876653211 11
Q ss_pred eCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 382 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 382 ~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
.-.......-..+|.. +|.+|...+++|.|.-|+
T Consensus 348 ~~s~~~~tVRQ~sfS~---dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSR---DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred Eeccccceeeeeeecc---cCcEEEEEeCCCcEEEEE
Confidence 1111111133455543 488888888999998887
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=3.9e-14 Score=121.25 Aligned_cols=219 Identities=17% Similarity=0.256 Sum_probs=147.0
Q ss_pred ceeeeEEc-------CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCe---eEEEEccCCCceEEEecCCeEEEE
Q 014302 101 DLQGVSWH-------QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV---KVLEWRPNGGRSLSVGCKGGICIW 170 (427)
Q Consensus 101 ~V~~l~~s-------p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v---~~l~~sp~~~~~la~g~~~~i~iw 170 (427)
.|...+|= |+..++|+.+.+.-|++||.-++..........|...+ .+++|+||| ..|.+|....|+++
T Consensus 106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGykrcirvF 184 (406)
T KOG2919|consen 106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGYKRCIRVF 184 (406)
T ss_pred EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeecccceEEEe
Confidence 56666664 67779999999999999999988333332233355544 589999999 67777888999999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC-CCCcccCc-----------------eE
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRFPGLGT-----------------PI 232 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~-----------------~~ 232 (427)
++..+|......+. +..-+....+-+.+++|+|- .+.++.++ .+
T Consensus 185 dt~RpGr~c~vy~t------------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll 246 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTT------------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL 246 (406)
T ss_pred eccCCCCCCcchhh------------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee
Confidence 99766653322222 11112233566778899884 33444332 23
Q ss_pred EeccCCeEEEEEccCCCEEEEEec-CCcEEEEEcCCCCccccc--cC---CCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 233 RRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWS--ST---SGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 233 ~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
-+|.++|+.++|.++|+.|++|.. |-.|-.||++......+. .| +..-.-+...|+|++|+++ +.++.+.+|+
T Consensus 247 ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG-~tdG~V~vwd 325 (406)
T KOG2919|consen 247 GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG-DTDGSVRVWD 325 (406)
T ss_pred cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc-CCCccEEEEe
Confidence 458899999999999999998765 778999999977653332 22 3333455667999999876 4555777777
Q ss_pred eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302 307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 350 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~ 350 (427)
+.+.-.. . ......+.-++.++++|--..+|++
T Consensus 326 lk~~gn~--~---------sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 326 LKDLGNE--V---------SVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred cCCCCCc--c---------cccccccccccceecCcccceeeec
Confidence 7663110 0 0111233468999999998888884
No 167
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.1e-13 Score=129.65 Aligned_cols=213 Identities=21% Similarity=0.273 Sum_probs=131.9
Q ss_pred CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCC
Q 014302 120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGP 196 (427)
Q Consensus 120 d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (427)
+..|.|||++... . .....|...+.+++|||||++++.++.+ ..|.+|++. ++
T Consensus 183 ~~~i~i~d~dg~~--~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~---------tg------------ 238 (429)
T PRK01742 183 PYEVRVADYDGFN--Q-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR---------SG------------ 238 (429)
T ss_pred eEEEEEECCCCCC--c-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC---------CC------------
Confidence 4688899887652 2 2334566789999999999655555433 358889886 11
Q ss_pred CcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecCCcEEEE--EcCCCCcccc
Q 014302 197 GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLW--ETNTWTSEPW 273 (427)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iw--d~~~~~~~~~ 273 (427)
....+.. ..+....++|+|||+.|+.+ +.+|.+.|| |+.++....+
T Consensus 239 --~~~~l~~-----------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 239 --ARKVVAS-----------------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred --ceEEEec-----------------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 1011110 11123357899999988854 467876555 6666655555
Q ss_pred ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 274 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 274 ~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
..+...+..++|+|||+.|++++..++...+|.+....... ..+.+. . ..++|+|||++|++. +
T Consensus 288 t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~------------~~l~~~-~-~~~~~SpDG~~ia~~--~ 351 (429)
T PRK01742 288 TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA------------SLVGGR-G-YSAQISADGKTLVMI--N 351 (429)
T ss_pred ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe------------EEecCC-C-CCccCCCCCCEEEEE--c
Confidence 56666788999999999998877655544444443211000 001111 1 357899999999885 3
Q ss_pred CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
... +.+||+.++....+... ... ...+|.|+ |..|+.+..+|.+.++.+.
T Consensus 352 ~~~-----i~~~Dl~~g~~~~lt~~------~~~---~~~~~sPd---G~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 352 GDN-----VVKQDLTSGSTEVLSST------FLD---ESPSISPN---GIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCC-----EEEEECCCCCeEEecCC------CCC---CCceECCC---CCEEEEEEcCCCceEEEEE
Confidence 222 77799988775433211 111 14568885 7778888788888776654
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=135.02 Aligned_cols=220 Identities=17% Similarity=0.239 Sum_probs=160.5
Q ss_pred CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302 97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~ 174 (427)
|.+| .|+|++|+.||+++|+|+.|..|.||.-.. .-.+...|.+.|.|+.|+|-. +.|++.+-...-+|..+
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl----EG~LkYSH~D~IQCMsFNP~~-h~LasCsLsdFglWS~~- 122 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL----EGILKYSHNDAIQCMSFNPIT-HQLASCSLSDFGLWSPE- 122 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecccc----cceeeeccCCeeeEeecCchH-HHhhhcchhhccccChh-
Confidence 4455 799999999999999999999999997443 335667899999999999998 67777766667789876
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEe---c
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRR---G 235 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~---~ 235 (427)
.....+.....++.+.+|+.||++++.|. .+.+ .
T Consensus 123 ---------------------------qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~ 175 (1081)
T KOG1538|consen 123 ---------------------------QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS 175 (1081)
T ss_pred ---------------------------hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC
Confidence 01223444577889999999999965331 1222 3
Q ss_pred cCCeEEEEEccCC-----CEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 236 FGGLSILKWSPTG-----DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 236 ~~~v~~~~~sp~g-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
..+|++++|+|.. ..+++.....++..|.+.......-........++.+.++|.+++.|+++. ..++...
T Consensus 176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk----~L~~fTR 251 (1081)
T KOG1538|consen 176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK----QLSLFTR 251 (1081)
T ss_pred CCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC----ceEEEee
Confidence 4689999999854 367788888888888876544333333445566888999999999988776 5555554
Q ss_pred CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 311 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
....-|... ....+|+.++..|+++++++ |+.| |+|..|++-.
T Consensus 252 ~GvrLGTvg----------~~D~WIWtV~~~PNsQ~v~~---GCqD---GTiACyNl~f 294 (1081)
T KOG1538|consen 252 DGVRLGTVG----------EQDSWIWTVQAKPNSQYVVV---GCQD---GTIACYNLIF 294 (1081)
T ss_pred cCeEEeecc----------ccceeEEEEEEccCCceEEE---EEcc---CeeehhhhHH
Confidence 221111111 11238999999999999999 8888 8899998753
No 169
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.9e-13 Score=122.38 Aligned_cols=233 Identities=17% Similarity=0.210 Sum_probs=159.2
Q ss_pred CEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccccccCccccc
Q 014302 112 HIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFL 189 (427)
Q Consensus 112 ~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~ 189 (427)
.+++++. ....+.+|.+... .....+.-..+.|.+++-+|+| .+|+.| -.+.+.+|.+. +|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~--~~~~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWels---------sG----- 113 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKK--DQVVQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELS---------SG----- 113 (476)
T ss_pred hheeeecccCccccccccCch--hhhhhhcccccceeeeecCCCc-eEEEeecccCcEEEEEec---------cc-----
Confidence 4555553 3457888988766 2222334466789999999999 555555 66999999998 22
Q ss_pred ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCC-
Q 014302 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW- 268 (427)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~- 268 (427)
.++. .+..|.+.|+++.|+-||.+|++|+.||.|.+|++...
T Consensus 114 -----------~LL~--------------------------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 114 -----------ILLN--------------------------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred -----------cHHH--------------------------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 1122 34557889999999999999999999999999986431
Q ss_pred ------Cc---cccccCCCCeeEEEECCC--CCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302 269 ------TS---EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 269 ------~~---~~~~~~~~~v~~v~~spd--g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
.. ..+..|.-.|+++...+- ..+|+++ +.|.++++|++.....-+ ...-...+.+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLl-------------ti~fp~si~a 222 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLL-------------TITFPSSIKA 222 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeE-------------EEecCCccee
Confidence 11 234489999999888764 3566665 555588888887752211 1111227899
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE-----------EEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-----------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 406 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~ 406 (427)
|+.+|-++.+.+ |+++ |.|.+.++...+-. ..+....+.|........|++..- +|.+|.
T Consensus 223 v~lDpae~~~yi---Gt~~---G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~---DgtlLl 293 (476)
T KOG0646|consen 223 VALDPAERVVYI---GTEE---GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST---DGTLLL 293 (476)
T ss_pred EEEcccccEEEe---cCCc---ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec---CccEEE
Confidence 999999999977 8888 77888887543311 111111112222212355777654 499999
Q ss_pred EEeeCceEEEEeccc
Q 014302 407 VCWSSGFCCTYPLIF 421 (427)
Q Consensus 407 v~~~~g~i~~~~~~~ 421 (427)
.|-.||.+++|+++=
T Consensus 294 SGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYS 308 (476)
T ss_pred eeCCCCCEEEEecch
Confidence 999999999999873
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.59 E-value=2.4e-13 Score=114.78 Aligned_cols=210 Identities=14% Similarity=0.234 Sum_probs=139.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee----ccCCcCCeeEEEEcc--CCCceEEEecCCeEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~----~~~~~~~v~~l~~sp--~~~~~la~g~~~~i~iw~~~~ 174 (427)
.|.|+.|.|++..||+.. |..|.+|+++........+ ...+....++-+||| ++ ..+++.+++++..||+.
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~tt~d~tl~~~D~R- 201 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVATTSDSTLQFWDLR- 201 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEEEeCCCcEEEEEcc-
Confidence 789999999999998885 8899999998873311111 123566788999999 45 78899999999999997
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-E
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-A 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~ 253 (427)
+. ..... .-..|...+..+.|+|+.++++ +
T Consensus 202 --------T~----------------~~~~s-------------------------I~dAHgq~vrdlDfNpnkq~~lvt 232 (370)
T KOG1007|consen 202 --------TM----------------KKNNS-------------------------IEDAHGQRVRDLDFNPNKQHILVT 232 (370)
T ss_pred --------ch----------------hhhcc-------------------------hhhhhcceeeeccCCCCceEEEEE
Confidence 11 11111 1223667788999999988654 9
Q ss_pred EecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC-----------CCcccccc-
Q 014302 254 AKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-----------PSLDAHLL- 319 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~- 319 (427)
++.||.|+|||.+..+.. .+..|..+|.++.|+|.-..|+.+++.+..+..+....-. ....++..
T Consensus 233 ~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 233 CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE 312 (370)
T ss_pred cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence 999999999999987763 3448999999999999765554444444444444333211 01111100
Q ss_pred --cccccc--c-eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 320 --PVDLPD--I-VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 320 --~~~~~~--~-~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
...++. . ....+...|.+++||.-..++..+ -+-| |.+.|=.+
T Consensus 313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS--LSYD---GRviIs~V 360 (370)
T KOG1007|consen 313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS--LSYD---GRVIISSV 360 (370)
T ss_pred HhcccccccccccccccccceEEEeeccCCCeeEEE--eccC---ceEEeecC
Confidence 001111 1 223356689999999888888765 3334 55665444
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.3e-14 Score=128.27 Aligned_cols=234 Identities=18% Similarity=0.318 Sum_probs=162.1
Q ss_pred ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCc
Q 014302 135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ 213 (427)
Q Consensus 135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (427)
....+.+|.+.|.+|+..|.| ..|++|++ |+++||.+. ++ .|+.... ....
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~---------Tg----------------Rcvr~~~--~d~~ 443 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIA---------TG----------------RCVRTVQ--FDSE 443 (733)
T ss_pred eeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEee---------cc----------------eEEEEEe--ecce
Confidence 445667899999999999988 78888877 999999997 33 3444333 2457
Q ss_pred eeeeEeCCCCCC--c----------------------------ccC-----------------------c--eEEeccCC
Q 014302 214 ITALSWGPDGRF--P----------------------------GLG-----------------------T--PIRRGFGG 238 (427)
Q Consensus 214 v~~~~~spdg~~--l----------------------------~~~-----------------------~--~~~~~~~~ 238 (427)
|.+++|+|.+.. + +.. . ..-.|...
T Consensus 444 I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~ 523 (733)
T KOG0650|consen 444 IRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKS 523 (733)
T ss_pred eEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCc
Confidence 889999988776 0 000 0 01126678
Q ss_pred eEEEEEccCCCEEEEEecC---CcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302 239 LSILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 314 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~ 314 (427)
|..+.|+..|.||++...+ ..|.|+++..... ..+....+.+.++.|+|...+|++++.. .++++++.....
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqel-- 599 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQEL-- 599 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHH--
Confidence 9999999999999965543 4688999876655 4555778899999999999998877543 455555554310
Q ss_pred cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302 315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 394 (427)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
. ...+.+...|..|+.+|.|..|++ ++.| +.+..||+....- |...++-.... ...++
T Consensus 600 v----------KkL~tg~kwiS~msihp~GDnli~---gs~d---~k~~WfDldlssk----Pyk~lr~H~~a--vr~Va 657 (733)
T KOG0650|consen 600 V----------KKLLTGSKWISSMSIHPNGDNLIL---GSYD---KKMCWFDLDLSSK----PYKTLRLHEKA--VRSVA 657 (733)
T ss_pred H----------HHHhcCCeeeeeeeecCCCCeEEE---ecCC---CeeEEEEcccCcc----hhHHhhhhhhh--hhhhh
Confidence 0 111233448999999999999988 7777 6699999864321 11122222222 34788
Q ss_pred eccCCCCCceeEEEeeCceEEEEeccccCCC
Q 014302 395 FHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL 425 (427)
Q Consensus 395 f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~~ 425 (427)
||+. -.|+|+|..||.+++|--+.-++|
T Consensus 658 ~H~r---yPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 658 FHKR---YPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred hccc---cceeeeecCCCcEEEEeeeeehhh
Confidence 9997 458999999999999874444444
No 172
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.9e-13 Score=131.02 Aligned_cols=180 Identities=15% Similarity=0.254 Sum_probs=110.7
Q ss_pred ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~ 176 (427)
.+.+.+|||||++||+.+.+ ..|++||+..+...... ...+....++|+|||..++.+.. ++.+.||.++..
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~---~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~- 280 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA---SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN- 280 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe---cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC-
Confidence 68899999999999987654 47999998776222222 12223457899999955555543 466777766510
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEe
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAK 255 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~ 255 (427)
++ .. . .+..+...+....|+|||+.|+ ++.
T Consensus 281 ------~~--------------~~---~--------------------------~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 281 ------GG--------------TP---S--------------------------QLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred ------CC--------------Ce---E--------------------------eeccCCCCcCCEEECCCCCEEEEEEC
Confidence 00 00 0 1111233456788999999887 555
Q ss_pred cCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302 256 FDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
.++..+||++..... .....+.. ..+.|+|||++|++++. + .+..|++....... + .....
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-~-~i~~~Dl~~g~~~~------l--------t~~~~ 373 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-D-NVVKQDLTSGSTEV------L--------SSTFL 373 (429)
T ss_pred CCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-C-CEEEEECCCCCeEE------e--------cCCCC
Confidence 678889998764332 22223333 46789999999988755 3 34446554431100 0 00012
Q ss_pred eeEEEECCCCCEEEEEE
Q 014302 335 IEKIAWDASGERLAVSY 351 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~ 351 (427)
..+++|+|||++|+.+.
T Consensus 374 ~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 374 DESPSISPNGIMIIYSS 390 (429)
T ss_pred CCCceECCCCCEEEEEE
Confidence 35678999999999853
No 173
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.58 E-value=1.2e-13 Score=129.32 Aligned_cols=209 Identities=16% Similarity=0.177 Sum_probs=157.4
Q ss_pred eEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccccc
Q 014302 105 VSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (427)
Q Consensus 105 l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~ 183 (427)
+++-+ ++-+|++|+.|.++.+|..... .+.....+|+..|.+++-..++ .++.++.|.++++|...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~---------- 130 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIG---------- 130 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCCcC-ceEecccccceEEecch----------
Confidence 66665 4447999999999999988877 7778888999999999988777 56666677999999887
Q ss_pred CcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------ceEEeccCCeEEEEEccCCC
Q 014302 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------TPIRRGFGGLSILKWSPTGD 249 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~~~~~~~~~v~~~~~sp~g~ 249 (427)
.+...+.+| ...|..++.-|++.++.-+ +.+.+|..-|+.+++-+++
T Consensus 131 -----------------~l~~~l~gH-~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~- 191 (745)
T KOG0301|consen 131 -----------------ELVYSLQGH-TASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS- 191 (745)
T ss_pred -----------------hhhcccCCc-chheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-
Confidence 445557777 8888888888887653211 2356688999999998765
Q ss_pred EEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee
Q 014302 250 YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 250 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
.+++++.||.|++|++.........+|...+.++....++..+++++ +++++++|..... ...+
T Consensus 192 ~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e~---------------~q~I 255 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDEC---------------VQVI 255 (745)
T ss_pred CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCce---------------EEEE
Confidence 47788889999999995444466779999999999888888888764 5547777765532 1122
Q ss_pred ccCC-ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 330 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 330 ~~~~-~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.+.+ .|+++.+-++|..+ + |+.| |.|+||...
T Consensus 256 ~lPttsiWsa~~L~NgDIv-v---g~SD---G~VrVfT~~ 288 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGDIV-V---GGSD---GRVRVFTVD 288 (745)
T ss_pred ecCccceEEEEEeeCCCEE-E---eccC---ceEEEEEec
Confidence 2222 78888888888754 4 5566 779999875
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.58 E-value=5.3e-13 Score=112.71 Aligned_cols=221 Identities=17% Similarity=0.226 Sum_probs=155.6
Q ss_pred EEEEEe----CCCeEEEEEccCCCCcc-eeeccCCcCCeeEEEEccCCCceEEEecC--------CeEEEEeccCCCCcc
Q 014302 113 IVAFIS----GSTQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GGICIWAPSYPGNAA 179 (427)
Q Consensus 113 ~lat~~----~d~~v~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~la~g~~--------~~i~iw~~~~~~~~~ 179 (427)
.+++|+ .|..|.+-+++..+... ......|.+.|+.++-+|....+|++... .++.||.+..+-+..
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 455664 36788888887763322 23334577899999999999889888632 235599987332221
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------e----EE-----eccC
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------P----IR-----RGFG 237 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------~----~~-----~~~~ 237 (427)
+ ...+.++..+.....+.|.|+.|.|++..+++.. . +. .+..
T Consensus 108 ~----------------~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 108 N----------------SSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred c----------------cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccc
Confidence 1 1123455566655577899999999987744221 1 00 1334
Q ss_pred CeEEEEEcc--CCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302 238 GLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP- 312 (427)
Q Consensus 238 ~v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~- 312 (427)
..++-+||| +|..+++.+ |++++.||+++.++.... .|...|..+.|+|+-+++++++++++.+++|+....+.
T Consensus 172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred eecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 567778998 777777665 899999999988874333 88899999999999999998889998999998877421
Q ss_pred --CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 313 --SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 313 --~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
.+.+|.. .|++|.|+|--..|+.+ ++.| ..|.+|...+
T Consensus 251 v~el~~HsH--------------WvW~VRfn~~hdqLiLs--~~SD---s~V~Lsca~s 290 (370)
T KOG1007|consen 251 VQELPGHSH--------------WVWAVRFNPEHDQLILS--GGSD---SAVNLSCASS 290 (370)
T ss_pred ccccCCCce--------------EEEEEEecCccceEEEe--cCCC---ceeEEEeccc
Confidence 3334433 89999999987777765 7777 5699998754
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.57 E-value=4.6e-14 Score=121.08 Aligned_cols=202 Identities=10% Similarity=0.206 Sum_probs=126.1
Q ss_pred ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302 101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~ 176 (427)
.|+.|.++|+. ++|++++.|.+||+|++++. ...... .+|.+.|.++.|+++|.+++.+|.|.++++|+++.+.
T Consensus 137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 99999999988 48899999999999999988 344333 3499999999999999888888889999999997322
Q ss_pred CccccccC----cccccccccCCCCcceeEeehhcccCCCcee-----------------eeEeCCCC--CCcc------
Q 014302 177 NAASVRSG----AASFLGALSRGPGTRWTLVDFLRSQNGEQIT-----------------ALSWGPDG--RFPG------ 227 (427)
Q Consensus 177 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------~~~~spdg--~~l~------ 227 (427)
-+..+... +..+..+++.... .+.....-+.| ...|. -++|-|.. +.+.
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~-~fp~fst~diH-rnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e 292 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKT-HFPDFSTTDIH-RNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPE 292 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCcccc-ccccccccccc-cchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCc
Confidence 11100000 0000000110000 00000001111 22232 23444410 0000
Q ss_pred -cCce---EEeccCCeEEEE--EccCCCEEEEEecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECCCCCEEEEEE
Q 014302 228 -LGTP---IRRGFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAF 296 (427)
Q Consensus 228 -~~~~---~~~~~~~v~~~~--~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~~~ 296 (427)
..+. +......++.+. |.|-++.||.|...|.|.+||++........ .....|...+||.||+.|+..+
T Consensus 293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC 372 (385)
T ss_pred cceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence 0011 112334566655 5688899999999999999999987763221 4456799999999999998765
Q ss_pred cCCceeeeeee
Q 014302 297 AGSLTLGSIHF 307 (427)
Q Consensus 297 ~~~~~i~~~~~ 307 (427)
. +++++.|+.
T Consensus 373 d-d~~Vwrwdr 382 (385)
T KOG1034|consen 373 D-DGTVWRWDR 382 (385)
T ss_pred C-CCcEEEEEe
Confidence 4 447777764
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=9.2e-12 Score=115.66 Aligned_cols=242 Identities=10% Similarity=0.095 Sum_probs=143.0
Q ss_pred EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCccccccccc
Q 014302 115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALS 193 (427)
Q Consensus 115 at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 193 (427)
++...++.|.+|++...+.........+.+....++++|+++.+++++. ++.|.+|+++..+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g----------------- 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG----------------- 68 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-----------------
Confidence 3346789999999964321111122223456788999999954545443 4888889886100
Q ss_pred CCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCc-c
Q 014302 194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTS-E 271 (427)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~-~ 271 (427)
.+.... ... ..+....++++|++++|++++ .++.|.+|++.+... .
T Consensus 69 -----~l~~~~--------------------------~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 69 -----ALTFAA--------------------------ESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred -----ceEEee--------------------------eec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 000000 000 112345789999999999665 488999999974322 1
Q ss_pred c---cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEE
Q 014302 272 P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA 348 (427)
Q Consensus 272 ~---~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La 348 (427)
. ...+......++++|+|++++++...++.+.+|++... ..+..... .......+.....++|+|+|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-g~l~~~~~-----~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 117 APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-GHLVAQEP-----AEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-CcccccCC-----CceecCCCCCCceEEECCCCCEEE
Confidence 1 11233456778899999999888888789999998652 11111000 000111123567899999999998
Q ss_pred EEEecCCCcceeEEEEEEecc--CceEEEeeeeeeeCC-CCCCCceeEEeccCCCCCceeEEE-eeCceEEEEec
Q 014302 349 VSYKGGDDIYKGLIAIYDARR--TPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPL 419 (427)
Q Consensus 349 ~~~~~~~d~~~g~i~vwd~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~g~~l~v~-~~~g~i~~~~~ 419 (427)
++..++ ++|.+|++.. +.+..+.....+... .....+..+.|+|+ |..|.|+ ..++.|.+|++
T Consensus 191 v~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd---g~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 191 CVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD---GRHLYACDRTASLISVFSV 257 (330)
T ss_pred EEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC---CCEEEEecCCCCeEEEEEE
Confidence 864333 5699999973 333222222111110 01112346888886 5556665 44788988876
No 177
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=4.8e-13 Score=128.74 Aligned_cols=204 Identities=14% Similarity=0.170 Sum_probs=126.2
Q ss_pred ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCe--EEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGG--ICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~--i~iw~~~~ 174 (427)
.+.+.+|+|||+.|+..+. +..|.+||+..+ .... ...+.+.+.+.+|+|||+.++.+.. ++. |.+|++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~- 278 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--QREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR- 278 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--cEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-
Confidence 6889999999999988764 468999998776 2222 2345567788999999966655544 344 4455554
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
++ . ... +..+........|+|||++|+..
T Consensus 279 --------~~--------------~--~~~---------------------------Lt~~~~~~~~~~~spDG~~i~f~ 307 (435)
T PRK05137 279 --------SG--------------T--TTR---------------------------LTDSPAIDTSPSYSPDGSQIVFE 307 (435)
T ss_pred --------CC--------------c--eEE---------------------------ccCCCCccCceeEcCCCCEEEEE
Confidence 11 0 000 11112234457899999988855
Q ss_pred e-cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302 255 K-FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 255 ~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
+ .+| .|++||+..++...+......+..+.|+|||++|++...+.+ .++++++..... ..+
T Consensus 308 s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--------------~~l 373 (435)
T PRK05137 308 SDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--------------RIL 373 (435)
T ss_pred ECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--------------Eec
Confidence 4 333 577888776655554444556778899999999998765443 455555433210 001
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
.....+..+.|+|||++|+.............|+++++..+...
T Consensus 374 t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 374 TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 11124578899999999987543221100024888888665543
No 178
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.57 E-value=1.5e-13 Score=127.51 Aligned_cols=252 Identities=18% Similarity=0.173 Sum_probs=158.6
Q ss_pred eEEcCC---CCEEEEEeCCCeEEEEEccCCCCc--c--eeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302 105 VSWHQH---KHIVAFISGSTQVIVRDYEDSGKD--A--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (427)
Q Consensus 105 l~~sp~---g~~lat~~~d~~v~vwd~~~~~~~--~--~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~ 177 (427)
..|++. ...||.+.+||.|.++|....... . ......|...|.++.|.|-...++...+|.++++||+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk---- 130 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK---- 130 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec----
Confidence 455542 238899999999999987655111 1 22334599999999999944334455577999999997
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEec
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKF 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~ 256 (427)
.. .+ . -+....+|.+.+.+++|.|+...++ +|+.
T Consensus 131 -----~s----------------~l----~--------------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 131 -----TS----------------RL----V--------------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred -----cc----------------ee----e--------------------cceeecccccccchhhhccCCCcceeeccC
Confidence 11 00 0 0113445788899999999888665 9999
Q ss_pred CCcEEEEEcCCCCcc----------------------------ccccCCCCeeE---EEECCCCCEEEEEEcCCceeeee
Q 014302 257 DGTFYLWETNTWTSE----------------------------PWSSTSGFVTG---ATWDPEGRMILLAFAGSLTLGSI 305 (427)
Q Consensus 257 dg~v~iwd~~~~~~~----------------------------~~~~~~~~v~~---v~~spdg~~l~~~~~~~~~i~~~ 305 (427)
||.|.|||++-.... .+..+...|.+ +.+..|...|++++..|+.|++|
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW 245 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence 999999999754310 11134445555 66778899999988878899999
Q ss_pred eeCCCCCCccccccccc-cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 306 HFASKPPSLDAHLLPVD-LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 306 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
++......+.......+ ++.. -...-.+.++..+..|.+|.++ +.| +.|++|++.+.. ..|.+.+.+.
T Consensus 246 DLRk~~~~~r~ep~~~~~~~t~--skrs~G~~nL~lDssGt~L~As---CtD---~sIy~ynm~s~s---~sP~~~~sg~ 314 (720)
T KOG0321|consen 246 DLRKNYTAYRQEPRGSDKYPTH--SKRSVGQVNLILDSSGTYLFAS---CTD---NSIYFYNMRSLS---ISPVAEFSGK 314 (720)
T ss_pred eecccccccccCCCcccCccCc--ccceeeeEEEEecCCCCeEEEE---ecC---CcEEEEeccccC---cCchhhccCc
Confidence 99886444433322221 0000 0011267888888999998774 445 459999997643 2333333332
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
......+.-...| ++.-|+.|.++++..+|-+
T Consensus 315 ~~~sf~vks~lSp---d~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 315 LNSSFYVKSELSP---DDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred ccceeeeeeecCC---CCceEeccCCCcceeeeee
Confidence 2111111111122 3555777778887777643
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.2e-14 Score=141.35 Aligned_cols=205 Identities=18% Similarity=0.269 Sum_probs=143.1
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|..+.|++.+. +||+|+.||.|.|||++........-.......|.+++|+-.-.++||+++. +.+.|||+++
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~---- 193 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK---- 193 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC----
Confidence 899999999876 9999999999999999886322222133366789999999887789999987 7899999981
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEEEecC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFAAKFD 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d 257 (427)
..+|..++.++ ....+..++|+|++. .|++++.|
T Consensus 194 --------------------------------~~pii~ls~~~-------------~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 194 --------------------------------KKPIIKLSDTP-------------GRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred --------------------------------CCcccccccCC-------------CccceeeeeeCCCCceeeeeecCC
Confidence 11111111111 012466788998875 45555554
Q ss_pred C---cEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302 258 G---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 258 g---~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
. .|.+||+|.-.. ..+..|...|.++.|++.+..++.++..++.+..|+...... . ......+
T Consensus 229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv------l------~~~p~~~ 296 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV------L------GELPAQG 296 (1049)
T ss_pred CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE------e------eecCCCC
Confidence 3 499999987665 344589999999999998866665667776777777666310 0 0011134
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
.++..+.|+|...-+.++ .+-| |.|.||.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~--asfd---gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAA--ASFD---GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhh--heec---cceeeeeeecCC
Confidence 489999999987744333 4444 679999997655
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=8.8e-13 Score=126.32 Aligned_cols=239 Identities=18% Similarity=0.263 Sum_probs=157.3
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCc----ceeeccCCcCCeeEEEEccCCCc--eEEEecCCeEEEEecc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~v~~l~~sp~~~~--~la~g~~~~i~iw~~~ 173 (427)
.|+|+.|+|... +||.|..+|+|.+||+...... .......|..+|+.+.|-.+-.. ++.++.||.|+.|+++
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~ 323 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD 323 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence 899999999765 8888899999999999887432 12334559999999999865544 8888899999999887
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-----------cc--------------c
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-----------PG--------------L 228 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-----------l~--------------~ 228 (427)
.-..+........ .............+++++|.+.... .. .
T Consensus 324 ~l~~P~e~~~~~~--------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 324 MLSLPVEGLLLES--------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred ccccchhhccccc--------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 3222222111100 0000001112334555565553221 00 0
Q ss_pred Cc-eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCC-cc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeee
Q 014302 229 GT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 305 (427)
Q Consensus 229 ~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~ 305 (427)
+. ....|.+.|+++.++|=+..++..+.|.+|+||...... +. .+..+...+.+++|||--..++++...+|.+.+|
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 11 123467899999999988877744449999999877333 32 3336666799999999888888888888888888
Q ss_pred eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
++..... .|+ ..........+.+.|+++|+.|++ |... |++.+|++..
T Consensus 470 DLl~~~~------~Pv----~s~~~~~~~l~~~~~s~~g~~lav---Gd~~---G~~~~~~l~~ 517 (555)
T KOG1587|consen 470 DLLQDDE------EPV----LSQKVCSPALTRVRWSPNGKLLAV---GDAN---GTTHILKLSE 517 (555)
T ss_pred hhhcccc------CCc----ccccccccccceeecCCCCcEEEE---ecCC---CcEEEEEcCc
Confidence 8776411 111 000011225678889999999999 5555 7799999964
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.5e-12 Score=124.63 Aligned_cols=201 Identities=12% Similarity=0.170 Sum_probs=122.0
Q ss_pred ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~~ 174 (427)
.+.+.+|||||+.||..+. +..+.+|++..+ ....+. ...+.+..++|+|||+.++.+... + .|.+|+++
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G--~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~- 275 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA- 275 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--CeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-
Confidence 6789999999999987643 457888888765 222222 233445678999999666555432 3 46667765
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
++ . ..+ +..+...+....|+|||+.|+..
T Consensus 276 --------tg--------------~--~~~---------------------------lt~~~~~~~~~~wSPDG~~I~f~ 304 (429)
T PRK03629 276 --------SG--------------Q--IRQ---------------------------VTDGRSNNTEPTWFPDSQNLAYT 304 (429)
T ss_pred --------CC--------------C--EEE---------------------------ccCCCCCcCceEECCCCCEEEEE
Confidence 11 0 000 00112235567899999988855
Q ss_pred ec-CCcEEEE--EcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302 255 KF-DGTFYLW--ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 255 ~~-dg~v~iw--d~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
+. ++...|| |+.+++...+.........++|+|||++|++....++ .++.+++..... ..+
T Consensus 305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--------------~~L 370 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--------------QVL 370 (429)
T ss_pred eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--------------EEe
Confidence 54 4444554 6655554444434445668999999999998765543 455666544311 001
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
..........|+|||++|+.+...+. ...+.++++......
T Consensus 371 t~~~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 371 TDTFLDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKA 411 (429)
T ss_pred CCCCCCCCceECCCCCEEEEEEcCCC---ceEEEEEECCCCCeE
Confidence 11112346789999999998643332 256888888654443
No 182
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=125.16 Aligned_cols=199 Identities=15% Similarity=0.218 Sum_probs=121.4
Q ss_pred ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~ 176 (427)
.+.+.+|+|||+.||..+.+ ..|.+||+..+ ....+ ....+.+.+++|+|||+.++.+.. ++...||.++..+
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g--~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG--RRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCC--CEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 67899999999999887643 45889998776 23222 223345678999999966655544 4667788775110
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK- 255 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~- 255 (427)
+ . .. .+..+........|+|||++|+..+
T Consensus 274 -------~--------------~---~~--------------------------~lt~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 274 -------S--------------G---LR--------------------------RLTQSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred -------C--------------C---cE--------------------------ECCCCCCCCcCeEEcCCCCEEEEEec
Confidence 0 0 00 0111122334567999999888444
Q ss_pred cCCcEEEEEcC--CCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeecc
Q 014302 256 FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 331 (427)
Q Consensus 256 ~dg~v~iwd~~--~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (427)
.++...||.+. +++..............+|||||++|++++..++ .++++++...... .+..
T Consensus 304 ~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--------------~lt~ 369 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--------------ALTD 369 (427)
T ss_pred CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--------------EccC
Confidence 45666777654 3333333223334557899999999998765543 5666666543110 0111
Q ss_pred CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
......+.|+|||++|+.+...... ..+.+.++..
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~~g 404 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQGGR---SVLAAVSSDG 404 (427)
T ss_pred CCCccCceECCCCCEEEEEEecCCC---EEEEEEECCC
Confidence 1133678999999999986443322 4576767643
No 183
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.3e-12 Score=125.64 Aligned_cols=200 Identities=16% Similarity=0.260 Sum_probs=123.6
Q ss_pred ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CC--eEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~--~i~iw~~~~ 174 (427)
.+.+.+|+|||+.|++.+.+ ..|.+|++..+ ....+ ..+.+...+++|+|||+.++.+.. ++ .|.+|++.
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g--~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~- 280 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG--QRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG- 280 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCC--CEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-
Confidence 67889999999999987643 46889998766 22222 233445568899999966655443 33 47777775
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
++ ... .+..+.......+|+|||++|+..
T Consensus 281 --------~g--------------~~~-----------------------------~lt~~~~~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 281 --------SR--------------QLT-----------------------------RLTNHFGIDTEPTWAPDGKSIYFT 309 (433)
T ss_pred --------CC--------------CeE-----------------------------ECccCCCCccceEECCCCCEEEEE
Confidence 11 100 011112223457899999988855
Q ss_pred e-cCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302 255 K-FDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 255 ~-~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
+ .+|. |+++|+.+++...+.........++|||||++|++....++ .+++|++...... .+
T Consensus 310 sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--------------~L 375 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--------------TL 375 (433)
T ss_pred ECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--------------EC
Confidence 4 4555 66666666554443333344567899999999998765442 4666666443110 11
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
..+.....+.|+|||++|+.+...... +.|.++++.....
T Consensus 376 t~~~~~~~p~~spdG~~i~~~s~~~g~---~~L~~~~~~g~~~ 415 (433)
T PRK04922 376 TPGSLDESPSFAPNGSMVLYATREGGR---GVLAAVSTDGRVR 415 (433)
T ss_pred CCCCCCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce
Confidence 111133567899999999886443322 5688888865443
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.2e-13 Score=124.78 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=99.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC------CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~ 174 (427)
.|++++|+|-...|++++.|+++++|+++.. ..++.....+|.++|.|+...+++..++..|-|++|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 7889999999999999999999999999332 2345556678999999999999997777888889999998861
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
...+ ...+ ........+.+|.+.++.+++|+....|+++
T Consensus 376 n~dp---------------------------~ds~--------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 376 NQDP---------------------------DDSY--------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred CCCc---------------------------cccc--------------Ccchhccceeccccceeeeeecccccceeee
Confidence 1000 0000 0001122466789999999999999999999
Q ss_pred ecCCcEEEEEcCCCCc
Q 014302 255 KFDGTFYLWETNTWTS 270 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~ 270 (427)
+.||+||+|+......
T Consensus 415 s~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP 430 (577)
T ss_pred cCCceEEeeccCCcCc
Confidence 9999999998765443
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.53 E-value=1.2e-12 Score=115.07 Aligned_cols=255 Identities=15% Similarity=0.234 Sum_probs=159.6
Q ss_pred CCCceeeeEEcC-----CCCEEEEE---eCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEecC-Ce
Q 014302 98 PEVDLQGVSWHQ-----HKHIVAFI---SGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GG 166 (427)
Q Consensus 98 ~~~~V~~l~~sp-----~g~~lat~---~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~ 166 (427)
.+..|+..+|.. +..+||+. +..|...|--+..- .....-+..+|.++|..++|+|..+..||+|++ .+
T Consensus 26 ddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~ 105 (472)
T KOG0303|consen 26 DDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK 105 (472)
T ss_pred cceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce
Confidence 344667777753 34566653 33344444222221 112334556899999999999999899999987 88
Q ss_pred EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP 246 (427)
Q Consensus 167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp 246 (427)
|.||.+..++- ...+ ..+ -..+.+|...|..++|+|
T Consensus 106 v~vW~IPe~~l-------------------------~~~l----tep---------------vv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 106 VMVWQIPENGL-------------------------TRDL----TEP---------------VVELYGHQRRVGLVQWHP 141 (472)
T ss_pred EEEEECCCccc-------------------------ccCc----ccc---------------eEEEeecceeEEEEeecc
Confidence 99999972111 0000 111 113556778889999999
Q ss_pred CCCE-EEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccc
Q 014302 247 TGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 325 (427)
Q Consensus 247 ~g~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 325 (427)
.-.. |++++.|.+|.+||+.+++......|...|.+++|+.||++|++++.+. .+++|+-.......++
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~--------- 211 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEG--------- 211 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeec---------
Confidence 8765 4488889999999999999866667999999999999999999876544 6666665554211111
Q ss_pred ceeecc-CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCce
Q 014302 326 IVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL 404 (427)
Q Consensus 326 ~~~~~~-~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~ 404 (427)
..| +..-..+.|-.+|..+.+.|+..++ ..+.|||-.....- .++..- +..+-+-+-|.... .+-+
T Consensus 212 ---~~heG~k~~Raifl~~g~i~tTGfsr~se---Rq~aLwdp~nl~eP----~~~~el--DtSnGvl~PFyD~d-t~iv 278 (472)
T KOG0303|consen 212 ---VAHEGAKPARAIFLASGKIFTTGFSRMSE---RQIALWDPNNLEEP----IALQEL--DTSNGVLLPFYDPD-TSIV 278 (472)
T ss_pred ---ccccCCCcceeEEeccCceeeeccccccc---cceeccCcccccCc----ceeEEe--ccCCceEEeeecCC-CCEE
Confidence 011 1134556688888866565555555 56999998653321 111111 11112223333221 2446
Q ss_pred eEEEeeCceEEEEec
Q 014302 405 LSVCWSSGFCCTYPL 419 (427)
Q Consensus 405 l~v~~~~g~i~~~~~ 419 (427)
..+|=.||.|..|.+
T Consensus 279 Yl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEI 293 (472)
T ss_pred EEEecCCcceEEEEe
Confidence 777878999998865
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=3.3e-12 Score=111.54 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=131.1
Q ss_pred ceeeeEEcCCCCEEEEEeCC--CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGS--TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.|-.+-|+. .++|..+.+ +.+++.++... ...........|.++.++.+ ++++ .-...|.|||+.
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~---~~ICe~~fpt~IL~VrmNr~--RLvV-~Lee~IyIydI~----- 114 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK---TTICEIFFPTSILAVRMNRK--RLVV-CLEESIYIYDIK----- 114 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccC---ceEEEEecCCceEEEEEccc--eEEE-EEcccEEEEecc-----
Confidence 444455553 345544443 45788777655 22222233457999998854 3444 444559999998
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE--EEec
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF--AAKF 256 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~--~~~~ 256 (427)
.++++..+..- ..+..++.++++++.+.+|+ ....
T Consensus 115 --------------------~MklLhTI~t~-----------------------~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 115 --------------------DMKLLHTIETT-----------------------PPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred --------------------cceeehhhhcc-----------------------CCCccceEeeccCCCCceEEecCCCC
Confidence 33444433321 11334566677777777888 4445
Q ss_pred CCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCC
Q 014302 257 DGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQ 333 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 333 (427)
.|.|.|||+.+.+.... ..|++.+.+++|+++|.+||+++..+..|+++.+.+... .+.....++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~------------ 219 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV------------ 219 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee------------
Confidence 78999999988887544 499999999999999999999988887788888877532 222222223
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
.|.+++|+||+++|+++ ++. ++|+||.+..
T Consensus 220 ~IySL~Fs~ds~~L~~s--S~T----eTVHiFKL~~ 249 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAAS--SNT----ETVHIFKLEK 249 (391)
T ss_pred EEEEEEECCCCCeEEEe--cCC----CeEEEEEecc
Confidence 89999999999999985 333 6799999864
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=5.1e-13 Score=121.71 Aligned_cols=183 Identities=15% Similarity=0.215 Sum_probs=113.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc----CCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS----DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~ 175 (427)
..+...=.|.+--|+.|-.-|.|++.|.... +...+.. ..+..|+++.|-|.++.++.++- .+.+.+++....
T Consensus 175 dfn~~~a~~~g~dllIGf~tGqvq~idp~~~--~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~ 252 (636)
T KOG2394|consen 175 DFNSFTATPKGLDLLIGFTTGQVQLIDPINF--EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV 252 (636)
T ss_pred cccccccCCCCcceEEeeccCceEEecchhh--HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc
Confidence 3344444567777888888888988665442 1211111 13468999999998777666664 488888887522
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhccc-CCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
....... ....+++. . ..+..-+.+ ...++.. +....+.|..++|+|||++||+.
T Consensus 253 ~~~t~p~-------~~~~k~~~-~-f~i~t~ksk~~rNPv~~---------------w~~~~g~in~f~FS~DG~~LA~V 308 (636)
T KOG2394|consen 253 CGATAPS-------YQALKDGD-Q-FAILTSKSKKTRNPVAR---------------WHIGEGSINEFAFSPDGKYLATV 308 (636)
T ss_pred ccCCCCc-------ccccCCCC-e-eEEeeeeccccCCccce---------------eEeccccccceeEcCCCceEEEE
Confidence 1100000 00001111 0 001100100 0122222 22234588999999999999999
Q ss_pred ecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 255 KFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
+.||.+||+|..+.+..-. ..--+...+++|||||+||++++.+| .+.+|.+.++
T Consensus 309 SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er 364 (636)
T KOG2394|consen 309 SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER 364 (636)
T ss_pred ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence 9999999999987765322 24456789999999999999998888 7777777765
No 188
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2.1e-12 Score=110.14 Aligned_cols=211 Identities=11% Similarity=0.120 Sum_probs=137.7
Q ss_pred CCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (427)
Q Consensus 97 l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~ 176 (427)
-.++++.+++|.+ ...+++|+.||.|+++|++.+ .......|..+|+++.+++-...+++.+.|++|++||....
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~---~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~- 126 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG---NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK- 126 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCC---cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-
Confidence 3456899999998 457789999999999999988 33444579999999999987767888888899999998610
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------ceE----EeccCCe
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------TPI----RRGFGGL 239 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------~~~----~~~~~~v 239 (427)
.....+. ....|.++..+-+--.+++. .++ +...-.+
T Consensus 127 ------------------------~~~~~~d--~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 127 ------------------------VVVGTFD--QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred ------------------------ccccccc--cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 0011111 11233333332211111000 001 1122458
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEcCCCCc---c--ccc---------cCCCCeeEEEECCCCCEEEEEEcCCceeeee
Q 014302 240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS---E--PWS---------STSGFVTGATWDPEGRMILLAFAGSLTLGSI 305 (427)
Q Consensus 240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~--~~~---------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~ 305 (427)
+++++-|++.-.++++-||.|.+=.+..... . .+. ..-.+|.+++|+|--..+++|++++ .+..|
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-~V~~W 259 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-IVNIW 259 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc-eEEEc
Confidence 8999999888899999999998866554421 1 111 1224789999999988899876655 55566
Q ss_pred eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEE
Q 014302 306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 351 (427)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~ 351 (427)
+...++.-..-|. -...|.+++|+-||..||+++
T Consensus 260 d~~~rKrl~q~~~------------~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 260 DLFNRKRLKQLAK------------YETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cCcchhhhhhccC------------CCCceEEEEeccCCCeEEEEe
Confidence 6555422111111 123799999999999999954
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.9e-12 Score=126.79 Aligned_cols=248 Identities=13% Similarity=0.152 Sum_probs=158.9
Q ss_pred ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCC-Ccce-ee-cc-------CCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSG-KDAC-IL-TS-------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (427)
Q Consensus 101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~-~~~~-~~-~~-------~~~~~v~~l~~sp~~~~~la~g~~~~i~ 168 (427)
.|+.+.+-.+ ..+|++|+.||.||||+-.... ++.. .. .. +-.+.=.-+.|......++++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 6888887443 3488999999999999754432 1111 11 11 1111124567887776777777779999
Q ss_pred EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc-cC
Q 014302 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS-PT 247 (427)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s-p~ 247 (427)
|||.+.+ .++..+... ....+++++-+ +.
T Consensus 1191 IWDa~~E-------------------------~~~~diP~~-------------------------s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1191 IWDAHKE-------------------------QVVADIPYG-------------------------SSTLVTALSADLVH 1220 (1387)
T ss_pred EEecccc-------------------------eeEeecccC-------------------------CCccceeecccccC
Confidence 9999811 111111111 12234444432 34
Q ss_pred CCEEEEEecCCcEEEEEcCCCCcc----ccccCCCC--eeEEEECCCCCE-EEEEEcCCceeeeeeeCCC-CCCcccccc
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGF--VTGATWDPEGRM-ILLAFAGSLTLGSIHFASK-PPSLDAHLL 319 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~--v~~v~~spdg~~-l~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 319 (427)
|+.+++|..||.|++||.+..... .+..|... |..+.+.+.|-. |+++ +.+|.|+.|++... ..++-..
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg-s~~G~I~~~DlR~~~~e~~~~i-- 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG-SQDGDIQLLDLRMSSKETFLTI-- 1297 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee-ccCCeEEEEecccCccccccee--
Confidence 789999999999999999876652 23367666 999999997765 6655 55557887777663 1111000
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 399 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 399 (427)
...-..++..++|..+++...+|+ |+. +.|+||++....+-.+.+.+.+-+.. .....|++|||-
T Consensus 1298 ------v~~~~yGs~lTal~VH~hapiiAs---Gs~----q~ikIy~~~G~~l~~~k~n~~F~~q~-~gs~scL~FHP~- 1362 (1387)
T KOG1517|consen 1298 ------VAHWEYGSALTALTVHEHAPIIAS---GSA----QLIKIYSLSGEQLNIIKYNPGFMGQR-IGSVSCLAFHPH- 1362 (1387)
T ss_pred ------eeccccCccceeeeeccCCCeeee---cCc----ceEEEEecChhhhcccccCcccccCc-CCCcceeeecch-
Confidence 000011235899999999999999 664 45999999876664444443333332 223679999995
Q ss_pred CCCceeEEEeeCceEEEEe
Q 014302 400 KQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 400 ~~g~~l~v~~~~g~i~~~~ 418 (427)
..+||+|..|..|.+|.
T Consensus 1363 --~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1363 --RLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred --hHhhhhccCCceEEEee
Confidence 67899999999999985
No 190
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.4e-11 Score=118.67 Aligned_cols=181 Identities=15% Similarity=0.226 Sum_probs=115.2
Q ss_pred eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec---CCeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (427)
Q Consensus 122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (427)
.|.+||.+.. .... ...+...+.+++|+|||+.++.+.. +..|.+|++. ++
T Consensus 183 ~l~~~d~dg~--~~~~-lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~---------~g-------------- 236 (435)
T PRK05137 183 RLAIMDQDGA--NVRY-LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE---------TG-------------- 236 (435)
T ss_pred EEEEECCCCC--CcEE-EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC---------CC--------------
Confidence 6667766544 2333 2356678999999999965555543 2568888886 11
Q ss_pred ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCc--EEEEEcCCCCcccccc
Q 014302 199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGT--FYLWETNTWTSEPWSS 275 (427)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~--v~iwd~~~~~~~~~~~ 275 (427)
... .+..+.+.+...+|||||+.|+ +.+.++. |++||+.++....+..
T Consensus 237 ~~~-----------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 237 QRE-----------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred cEE-----------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence 100 1111223455678999999876 5565655 7777888877666555
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
+........|+|||+.|++++...+ .++.+++..... ..+ ....+.+....|+|||++|+.+...
T Consensus 288 ~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~------~~l-------t~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 288 SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP------RRI-------SFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe------EEe-------ecCCCcccCeEECCCCCEEEEEEcC
Confidence 6666778999999999998775443 566666543211 000 0112345678999999999986443
Q ss_pred CCCcceeEEEEEEeccCceE
Q 014302 354 GDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~ 373 (427)
..+ ..|.+||+..+...
T Consensus 355 ~~~---~~i~~~d~~~~~~~ 371 (435)
T PRK05137 355 GGQ---FSIGVMKPDGSGER 371 (435)
T ss_pred CCc---eEEEEEECCCCceE
Confidence 332 45889998665543
No 191
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.5e-11 Score=117.83 Aligned_cols=209 Identities=15% Similarity=0.185 Sum_probs=125.9
Q ss_pred eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec---CCeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (427)
Q Consensus 122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (427)
.|.+||++.. ....+. .+...+.+.+|||||+.++.+.. +..+.+|++. ++
T Consensus 180 ~l~~~d~dg~--~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~---------~G-------------- 233 (429)
T PRK03629 180 ELRVSDYDGY--NQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA---------NG-------------- 233 (429)
T ss_pred eEEEEcCCCC--CCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC---------CC--------------
Confidence 6777777655 233332 35567999999999965554432 2457777775 11
Q ss_pred ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCcccccc
Q 014302 199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSS 275 (427)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~ 275 (427)
+...+. ...+.+..++|||||+.|+ +.+.+| .|++||+.+++...+..
T Consensus 234 ~~~~l~-----------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 234 AVRQVA-----------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred CeEEcc-----------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC
Confidence 101111 0112233578999999888 444455 48899998887665555
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
+...+..+.|+|||+.|++++...+ .++.+++..... ..+ ..........+|+|||++|+.....
T Consensus 285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~------~~l-------t~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP------QRI-------TWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe------EEe-------ecCCCCccCEEECCCCCEEEEEEcc
Confidence 5567789999999999988776543 445444443211 000 0112245678999999999885433
Q ss_pred CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCce
Q 014302 354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 413 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~ 413 (427)
... ..|.+||+.++....++.. .... ..+|.|+ |..|+....+|.
T Consensus 352 ~g~---~~I~~~dl~~g~~~~Lt~~------~~~~---~p~~SpD---G~~i~~~s~~~~ 396 (429)
T PRK03629 352 GGQ---QHIAKQDLATGGVQVLTDT------FLDE---TPSIAPN---GTMVIYSSSQGM 396 (429)
T ss_pred CCC---ceEEEEECCCCCeEEeCCC------CCCC---CceECCC---CCEEEEEEcCCC
Confidence 322 4599999988876544321 1111 3446665 555666555553
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=8.7e-13 Score=120.51 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=141.5
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEe-cCCeEEEE
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVG-CKGGICIW 170 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g-~~~~i~iw 170 (427)
..|.+| -|+|+.|+.+|.+||+|+.|-.+.|||.... +....+..+|...|.++.|-|... .++++| +|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc-ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 445666 7999999999999999999999999998754 334456678999999999999543 455544 66889999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY 250 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~ 250 (427)
|++.... + + .+ + ....+.. ....|...|..++-.|++..
T Consensus 123 dl~~~~~------~------------~--------~d-~-~~~~~~~-------------~~~cht~rVKria~~p~~Ph 161 (758)
T KOG1310|consen 123 DLDSSKE------G------------G--------MD-H-GMEETTR-------------CWSCHTDRVKRIATAPNGPH 161 (758)
T ss_pred ecccccc------c------------c--------cc-c-Cccchhh-------------hhhhhhhhhhheecCCCCCc
Confidence 9971100 0 0 00 0 0111111 12235667778888899955
Q ss_pred EE-EEecCCcEEEEEcCCCCc-cc----------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc--c
Q 014302 251 FF-AAKFDGTFYLWETNTWTS-EP----------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD--A 316 (427)
Q Consensus 251 l~-~~~~dg~v~iwd~~~~~~-~~----------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~--~ 316 (427)
.+ ++++||+++.||++.... .. +...--...++..+|...+++..+..+...++++.....+.+. +
T Consensus 162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~ 241 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG 241 (758)
T ss_pred eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence 54 999999999999987432 11 1122345678899997665444444444544444322111111 1
Q ss_pred ccc---ccccccceee-----c--------cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 317 HLL---PVDLPDIVSL-----T--------GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 317 ~~~---~~~~~~~~~~-----~--------~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
... |.+-.....+ . ...-++-+.|+|+|.-|.++..+ + .|+++|+...+.
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-E-----hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-E-----HVYLFDVNEDKS 307 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC-e-----EEEEEeecCCCC
Confidence 000 0000001100 0 01126778999999988885543 3 399999976543
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.3e-11 Score=119.11 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=166.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccC--CCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED--SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.+++.++||+++++|+|..||.|.||.-.. .......+.+-|...|++++|+++|.++|..|.++-+.+|.+..++
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-- 284 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-- 284 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--
Confidence 579999999999999999999999997544 2334556667798999999999999666665566888899998221
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc-----------------CceE---------
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL-----------------GTPI--------- 232 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-----------------~~~~--------- 232 (427)
+.+-.+...+|..+.|+||+.+... ...+
T Consensus 285 -------------------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 285 -------------------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred -------------------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 1122224677889999999887110 0000
Q ss_pred --EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-----------cCCCCeeEEEECCCCCEEEEEEcC
Q 014302 233 --RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-----------STSGFVTGATWDPEGRMILLAFAG 298 (427)
Q Consensus 233 --~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-----------~~~~~v~~v~~spdg~~l~~~~~~ 298 (427)
+...+-.+.++++|.-+.++..+..|.|.+||+.+.+... +. .+.-.+++++.+..|+++++.--.
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 1123446678899977788888899999999998766421 11 123357788888889998865321
Q ss_pred C---------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC-CCCC-EEEEEEecCCCcceeEEEEEEe
Q 014302 299 S---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD-ASGE-RLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 299 ~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~-~La~~~~~~~d~~~g~i~vwd~ 367 (427)
. ..++.|.......++ .+.......|+..+...++. +... ..++ .+.| |.++||-+
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~-------~L~T~I~~PH~~~~vat~~~~~~rs~~~vt---a~~d---g~~KiW~~ 486 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTF-------ILNTKINNPHGNAFVATIFLNPTRSVRCVT---ASVD---GDFKIWVF 486 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCccee-------EEEEEEecCCCceeEEEEEecCcccceeEE---eccC---CeEEEEEE
Confidence 1 123333333322111 11112223344444444444 4333 4544 4445 67999998
Q ss_pred ccCceE----EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 368 RRTPLI----SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 368 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
..-.-. ...-|-.+ +.-........+|. ++|.+|+++ -++.|.+|+.
T Consensus 487 ~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs---~dGslla~s-~~~~Itiwd~ 537 (792)
T KOG1963|consen 487 TDDSNIYKKSSNWTCKAI-GSYHKTPITALCFS---QDGSLLAVS-FDDTITIWDY 537 (792)
T ss_pred ecccccCcCccceEEeee-eccccCcccchhhc---CCCcEEEEe-cCCEEEEecC
Confidence 442211 01111111 11001111223343 458999999 7889999985
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.7e-12 Score=111.85 Aligned_cols=252 Identities=11% Similarity=0.087 Sum_probs=163.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC----CCccee-eccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----GKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~----~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~ 174 (427)
.|++|.|+.++++||+|+.|..++||+++.. ..++.. ....|...|.|++|.... ..|.+|. +++|.+-|+.
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiE- 135 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIE- 135 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecc-
Confidence 7999999999999999999999999998764 112222 334477899999999776 5666655 5999999997
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
+. ..+..+... ...+.|+.+..+|..+.|++.
T Consensus 136 --------t~----------------qsi~V~~~~------------------------~~~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 136 --------TK----------------QSIYVANEN------------------------NNRGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred --------cc----------------eeeeeeccc------------------------CcccceeecccCCCCceEEEE
Confidence 11 111111100 123579999999999999999
Q ss_pred ecCCcEEEEEcCCCCc--cccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec
Q 014302 255 KFDGTFYLWETNTWTS--EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 330 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~--~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (427)
+.++.|.+||++.... ..+. .......++.|+|.-..|+...+..+-..+|++......+-.......++.
T Consensus 168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~----- 242 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ----- 242 (609)
T ss_pred ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc-----
Confidence 9999999999987663 2222 444566788999988777666555556666666554221100000000110
Q ss_pred cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe----eeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302 331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS----LIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 406 (427)
Q Consensus 331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~ 406 (427)
....--++.|+|+|..|.+.-.+ ..-.+||+.+..++.+. |.|+.+... ..+++|..++ .++
T Consensus 243 ~~~~~M~~~~~~~G~Q~msiRR~------~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T----~KS~~F~~D~----~v~ 308 (609)
T KOG4227|consen 243 ENTEWMGSLWSPSGNQFMSIRRG------KCPLYFDFISQRCFVLKSDHNPNGYCNIKT----IKSMTFIDDY----TVA 308 (609)
T ss_pred cchhhhheeeCCCCCeehhhhcc------CCCEEeeeecccceeEeccCCCCcceeeee----eeeeeeecce----eee
Confidence 00122467899999988774222 23557898876665443 345554322 2256676553 378
Q ss_pred EEeeCceEEEEeccc
Q 014302 407 VCWSSGFCCTYPLIF 421 (427)
Q Consensus 407 v~~~~g~i~~~~~~~ 421 (427)
.|..+=.|++|.+.-
T Consensus 309 tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 309 TGSDHWGIHIWKLPR 323 (609)
T ss_pred ccCcccceEEEecCC
Confidence 887888899988753
No 195
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.48 E-value=3.4e-12 Score=114.22 Aligned_cols=239 Identities=16% Similarity=0.173 Sum_probs=157.7
Q ss_pred cCCcCCeeEEEEccCCC-ceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302 140 SDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (427)
Q Consensus 140 ~~~~~~v~~l~~sp~~~-~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (427)
.-+.+.|++++|+|... .++|+|.. |.|-+|++... ......+..+.. +..+|.++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~---------------------~~d~d~v~~f~~-hs~~Vs~l 240 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ---------------------EKDKDGVYLFTP-HSGPVSGL 240 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCC---------------------CCccCceEEecc-CCccccce
Confidence 34778999999999886 68888877 88999999510 001112222333 38889999
Q ss_pred EeCCCCCC--cc---cCc-------------eEEe--ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--ccccc
Q 014302 218 SWGPDGRF--PG---LGT-------------PIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSS 275 (427)
Q Consensus 218 ~~spdg~~--l~---~~~-------------~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~ 275 (427)
.|+|...- +. .|. ++.. ....+..+.|+.+...++.+..=|.+.+||+++.+. ..+.-
T Consensus 241 ~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred EecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 99985432 11 010 0111 223456677888888888887778999999998877 34557
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC
Q 014302 276 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD 355 (427)
Q Consensus 276 ~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~ 355 (427)
|+..|.+++++|...+++.+++.+.+.++|++......-. | -...+.|.-.|.+..|||+|-.|+++ +.
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----p----~lst~~HrrsV~sAyFSPs~gtl~TT---~~ 389 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----P----FLSTLPHRRSVNSAYFSPSGGTLLTT---CQ 389 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----c----ceecccccceeeeeEEcCCCCceEee---cc
Confidence 8889999999998887777777777888998877422111 1 13344556689999999998888874 44
Q ss_pred CcceeEEEEEEeccCceEEEeeeeeeeCC---CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 356 DIYKGLIAIYDARRTPLISLSLIGFIRGP---GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 356 d~~~g~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
| ..|+|||..--. -...|.+.|.-. +....+..-.|+|+ ..++.||----.|.+|+
T Consensus 390 D---~~IRv~dss~~s-a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~---~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 390 D---NEIRVFDSSCIS-AKDEPLGTIPHNNRTGRWLTPFKAAWDPD---YNLIVVGRYPRPIDVFD 448 (498)
T ss_pred C---CceEEeeccccc-ccCCccceeeccCcccccccchhheeCCC---ccEEEEeccCcceeEEc
Confidence 5 349999984100 012234444432 12234556678885 45777776666666664
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.48 E-value=1.7e-12 Score=114.52 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=59.8
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEcc--------C------CCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE--------D------SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 166 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~--------~------~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~ 166 (427)
.|+++.|+|+|.+||+|+.+|.|.+|... + ..+.......+|...|..++|+|++..+++.+.++.
T Consensus 67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS 146 (434)
T ss_pred eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce
Confidence 89999999999999999999999999876 1 112333445579999999999999954555556799
Q ss_pred EEEEeccC
Q 014302 167 ICIWAPSY 174 (427)
Q Consensus 167 i~iw~~~~ 174 (427)
+++||+..
T Consensus 147 ~~l~Dv~~ 154 (434)
T KOG1009|consen 147 VRLWDVHA 154 (434)
T ss_pred EEEEEecc
Confidence 99999973
No 197
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.6e-11 Score=116.25 Aligned_cols=183 Identities=18% Similarity=0.216 Sum_probs=107.9
Q ss_pred eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (427)
Q Consensus 122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (427)
.+.++|.+.. ....+ ..+...+.+.+|+|||+.++.+..+ ..|.+|++. ++
T Consensus 177 ~L~~~D~dG~--~~~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~---------~g-------------- 230 (427)
T PRK02889 177 QLQISDADGQ--NAQSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA---------TG-------------- 230 (427)
T ss_pred EEEEECCCCC--CceEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC---------CC--------------
Confidence 4555554332 22222 3456789999999999555544432 347788876 11
Q ss_pred ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEc--CCCCcccccc
Q 014302 199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWET--NTWTSEPWSS 275 (427)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~--~~~~~~~~~~ 275 (427)
.... +....+.+...+|||||+.|+ +.+.++...||.+ ..+....+..
T Consensus 231 ~~~~-----------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 231 RRRV-----------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred CEEE-----------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC
Confidence 1010 111122345678999999887 5677887666654 4444444444
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCce--eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 276 TSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 276 ~~~~v~~v~~spdg~~l~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
+......+.|+|||+.|++++..++. ++.+++..... ..+ . ..+......+|||||++||.+...
T Consensus 282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~------~~l------t-~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA------QRV------T-FTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce------EEE------e-cCCCCcCceEECCCCCEEEEEEcc
Confidence 55556788999999999987655443 33333332210 000 0 011133467899999999975433
Q ss_pred CCCcceeEEEEEEeccCceEEE
Q 014302 354 GDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
+.. ..|.+||+.++....+
T Consensus 349 ~g~---~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 349 GGA---FKLYVQDLATGQVTAL 367 (427)
T ss_pred CCc---EEEEEEECCCCCeEEc
Confidence 222 4699999988776543
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.4e-12 Score=109.10 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=115.9
Q ss_pred CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-CCc-eEEEecCCeEEEEeccCCCCccccccCccccc
Q 014302 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (427)
Q Consensus 112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~-~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~ 189 (427)
..+|++-.+|.|++||..++ .......++...++.++|... +.. +++++.||+|++||+....+......+
T Consensus 41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~----- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT----- 113 (376)
T ss_pred eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-----
Confidence 57999999999999999886 455556678888889999863 333 556667799999999732221111111
Q ss_pred ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------------eEEeccCCeEEEEEcc
Q 014302 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------------PIRRGFGGLSILKWSP 246 (427)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------------~~~~~~~~v~~~~~sp 246 (427)
.+...+..+++-+..++.+++|. ....|...|++++|+|
T Consensus 114 ------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 114 ------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred ------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 11112333444433333333332 1234889999999999
Q ss_pred CCC-EEEEEecCCcEEEEEcCCCCc----cccccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCCC
Q 014302 247 TGD-YFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 247 ~g~-~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~~ 310 (427)
... .|++|+.||.|.|||+..... .....+...|..+.|..++. .|.+ -.......+|++.+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~c-lTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMC-LTHMETFAIYELEDG 244 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEE-EEccCceeEEEccCC
Confidence 775 566999999999999987654 23347888899999999882 3433 344446777777665
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=7e-12 Score=109.20 Aligned_cols=223 Identities=17% Similarity=0.290 Sum_probs=143.3
Q ss_pred CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (427)
Q Consensus 142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (427)
....+..++|++.--.+.+.+.|..|++|+-.. .+...++......|++++|.|
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss--------------------------t~pt~Lks~sQrnvtclawRP 150 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--------------------------TCPTKLKSVSQRNVTCLAWRP 150 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC--------------------------CCCceecchhhcceeEEEecc
Confidence 345688899998653344445669999998761 223345555577899999999
Q ss_pred CCCC-cc-----------------cC-----------ceEEe-ccCCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCc
Q 014302 222 DGRF-PG-----------------LG-----------TPIRR-GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTS 270 (427)
Q Consensus 222 dg~~-l~-----------------~~-----------~~~~~-~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~ 270 (427)
.+.. ++ .+ +.++. ....|++|+|.+||..+++++ .|..|.|||..++.+
T Consensus 151 lsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 151 LSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred CCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 6543 11 11 11211 225799999999999999665 467899999999998
Q ss_pred cccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302 271 EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 349 (427)
Q Consensus 271 ~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~ 349 (427)
..+. ...+.+.-+.|||||.+|++++-+. ...+|+........ .-..+++.|+..+|+|+|++|..
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~da----vfrlw~e~q~wt~e---------rw~lgsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDA----VFRLWQENQSWTKE---------RWILGSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccc----eeeeehhcccceec---------ceeccCCceeeeeecCCCCEEEE
Confidence 7766 5667788999999999998876554 55555332111111 11234458999999999999988
Q ss_pred EEecCCCcceeEEEEEEeccC--ceE--------E------EeeeeeeeCC-CCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 350 SYKGGDDIYKGLIAIYDARRT--PLI--------S------LSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 350 ~~~~~~d~~~g~i~vwd~~~~--~~~--------~------~~~~~~~~~~-~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
++.++ =+||.+... ... . +..+....+. .....+.+++|.|. |.-|+|-+..+
T Consensus 298 ~~sgs-------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps---GeyLav~fKg~ 367 (445)
T KOG2139|consen 298 ACSGS-------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS---GEYLAVIFKGQ 367 (445)
T ss_pred EEcCC-------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC---CCEEEEEEcCC
Confidence 76665 345554321 111 0 0111111111 11234669999996 77799888766
Q ss_pred e
Q 014302 413 F 413 (427)
Q Consensus 413 ~ 413 (427)
.
T Consensus 368 ~ 368 (445)
T KOG2139|consen 368 S 368 (445)
T ss_pred c
Confidence 4
No 200
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.5e-11 Score=118.35 Aligned_cols=184 Identities=17% Similarity=0.243 Sum_probs=114.7
Q ss_pred CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCC
Q 014302 121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 197 (427)
Q Consensus 121 ~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (427)
.+|.+||.+.. ....+ ..+...+.+++|+|||+.++.+... ..+.+|++. ++
T Consensus 184 ~~l~i~D~~g~--~~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~---------~g------------- 238 (433)
T PRK04922 184 YALQVADSDGY--NPQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA---------TG------------- 238 (433)
T ss_pred EEEEEECCCCC--CceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC---------CC-------------
Confidence 35778887644 23333 3456679999999999655555433 357788876 11
Q ss_pred cceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCccccc
Q 014302 198 TRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWS 274 (427)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~ 274 (427)
....+ ....+....++|+|||+.|+ +.+.+| .|++||+.+++...+.
T Consensus 239 -~~~~l-----------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 239 -QRELV-----------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred -CEEEe-----------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc
Confidence 10100 00112234678999998876 555555 5999999888766555
Q ss_pred cCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302 275 STSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK 352 (427)
Q Consensus 275 ~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~ 352 (427)
.+......++|+|||+.|++++...+ .++.+++..... ..+ ...+.....++|||||++|+.+..
T Consensus 289 ~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~l-------t~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 289 NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ERL-------TFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EEe-------ecCCCCccCEEECCCCCEEEEEEC
Confidence 55555678999999999998875544 456555543211 000 001123456899999999998533
Q ss_pred cCCCcceeEEEEEEeccCceEEE
Q 014302 353 GGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 353 ~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
.+.. ..|.+||+.++....+
T Consensus 356 ~~~~---~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 356 SGGQ---YRIAVMDLSTGSVRTL 375 (433)
T ss_pred CCCc---eeEEEEECCCCCeEEC
Confidence 2222 4699999988776533
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=6.1e-12 Score=106.47 Aligned_cols=120 Identities=18% Similarity=0.285 Sum_probs=81.2
Q ss_pred CCeEEEEEccCCCEEE--EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCC
Q 014302 237 GGLSILKWSPTGDYFF--AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPP 312 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~--~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~ 312 (427)
+.|.+++|+|+|+.|+ .|..++.|.+||++...... -....+..+.|||+|++|++++.++ +.+..|++.+...
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFS--FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEe--ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 4699999999999877 34567899999997322222 2356778999999999999987543 4566666664311
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
. ... .+..+..++|||||++|+++.....-+.+..++||+.....+
T Consensus 138 i-------------~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 138 I-------------STF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred e-------------ecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 0 011 122578999999999999975431111124599999965443
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.45 E-value=5.2e-11 Score=114.30 Aligned_cols=267 Identities=19% Similarity=0.296 Sum_probs=160.7
Q ss_pred ceeeeEEcCCCC--E-EEEE-----------------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEE
Q 014302 101 DLQGVSWHQHKH--I-VAFI-----------------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS 160 (427)
Q Consensus 101 ~V~~l~~sp~g~--~-lat~-----------------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 160 (427)
.++.+.|+|++. . .++. ..++.+.||++..... ......-...|+++.|+|....+++
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~--Pe~~~~~~s~v~~~~f~p~~p~ll~ 259 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNT--PELVLESPSEVTCLKFCPFDPNLLA 259 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCC--ceEEEecCCceeEEEeccCCcceEE
Confidence 688899999876 1 1111 1224688999988733 2233345678999999999999999
Q ss_pred EecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC------------CCCCcc
Q 014302 161 VGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP------------DGRFPG 227 (427)
Q Consensus 161 ~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------------dg~~l~ 227 (427)
+|.. |.|.+||+...+.+.. ..+......+..+++.+.|.. ||++..
T Consensus 260 gG~y~GqV~lWD~~~~~~~~~--------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 260 GGCYNGQVVLWDLRKGSDTPP--------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred eeccCceEEEEEccCCCCCCC--------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 9987 9999999984333110 011111222244444444432 443310
Q ss_pred ----------cC---ceEE------eccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCc---------cccccCCC
Q 014302 228 ----------LG---TPIR------RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS---------EPWSSTSG 278 (427)
Q Consensus 228 ----------~~---~~~~------~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~ 278 (427)
.+ .... ....++++++|.+... .+++|+++|.|.-=+....+. .....|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 00 0000 1235688999988665 566999999987733322221 13337889
Q ss_pred CeeEEEECCCCCEEEEEEcCCceeeeeeeC-CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc
Q 014302 279 FVTGATWDPEGRMILLAFAGSLTLGSIHFA-SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI 357 (427)
Q Consensus 279 ~v~~v~~spdg~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~ 357 (427)
.|.++.++|-+..++.++.+. .+++|.-. ...+. .........|++++|||...-+..+ +..+
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~~~Pl------------~~~~~~~~~v~~vaWSptrpavF~~--~d~~- 463 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVIASPL------------LSLDSSPDYVTDVAWSPTRPAVFAT--VDGD- 463 (555)
T ss_pred ceEeeecCCCccceeeeeccc-eeEeccccCCCCcc------------hhhhhccceeeeeEEcCcCceEEEE--EcCC-
Confidence 999999999888777665533 44444333 11111 1111122258999999987766665 4545
Q ss_pred ceeEEEEEEeccCce---EEEeeeeeeeCCCCCCCce-eEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 358 YKGLIAIYDARRTPL---ISLSLIGFIRGPGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 358 ~~g~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
|.|.+||+..... .....+ . .++ ++.|.+ .|.+|++|-..|+|++|.+
T Consensus 464 --G~l~iWDLl~~~~~Pv~s~~~~--------~-~~l~~~~~s~---~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 464 --GNLDIWDLLQDDEEPVLSQKVC--------S-PALTRVRWSP---NGKLLAVGDANGTTHILKL 515 (555)
T ss_pred --CceehhhhhccccCCccccccc--------c-cccceeecCC---CCcEEEEecCCCcEEEEEc
Confidence 6799999965332 211111 1 122 333333 4899999999999999987
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.4e-11 Score=99.53 Aligned_cols=217 Identities=12% Similarity=0.140 Sum_probs=140.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--------CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
.|.+-+|+|.+++|+.|..+|+|.+..++.. ++.......+|.++|+.++|. | .+|.++++|.|+=|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d--~~Lls~gdG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D--DFLLSGGDGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h--hheeeccCceEEEeee
Confidence 3556689999999999999999999887653 233334446799999999998 3 4667777799997776
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe---ccCCeEEEEEccCCC
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR---GFGGLSILKWSPTGD 249 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~---~~~~v~~~~~sp~g~ 249 (427)
+...+.. .+....+- ..+++. ....|.+|...|..+
T Consensus 89 ~E~~es~---------------------~~K~lwe~--------------------~~P~~~~~~evPeINam~ldP~en 127 (325)
T KOG0649|consen 89 NEEEESL---------------------ATKRLWEV--------------------KIPMQVDAVEVPEINAMWLDPSEN 127 (325)
T ss_pred hhhhhhc---------------------cchhhhhh--------------------cCccccCcccCCccceeEeccCCC
Confidence 5100000 00000000 001110 124688899999888
Q ss_pred EEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccccccc
Q 014302 250 YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDI 326 (427)
Q Consensus 250 ~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~ 326 (427)
.++.++.|+.++-||+++++. ..+.+|+..+.++.--.....++++ .+++++++|+....+. .++. .+.+..
T Consensus 128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG-~EDGtvRvWd~kt~k~v~~ie~----yk~~~~ 202 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSG-AEDGTVRVWDTKTQKHVSMIEP----YKNPNL 202 (325)
T ss_pred cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeec-CCCccEEEEeccccceeEEecc----ccChhh
Confidence 888777899999999999997 5566999999999984434445555 5566888888776432 1111 111112
Q ss_pred eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
.....+..|-+++- +..+|++ |+. ..+.+|++++.++..+
T Consensus 203 lRp~~g~wigala~--~edWlvC---GgG----p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 203 LRPDWGKWIGALAV--NEDWLVC---GGG----PKLSLWHLRSSESTCV 242 (325)
T ss_pred cCcccCceeEEEec--cCceEEe---cCC----CceeEEeccCCCceEE
Confidence 22223445666655 4568987 444 3499999988766544
No 204
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.8e-11 Score=101.42 Aligned_cols=245 Identities=15% Similarity=0.253 Sum_probs=150.4
Q ss_pred eccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302 138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (427)
Q Consensus 138 ~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (427)
+..+|.+-|.++.|.+.|.++.+++.|.+++|||.+. ..+.|.+....+.| .+.|-.+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~---------------------~s~~W~~Ts~Wrah-~~Si~rV 65 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS---------------------DSGTWSCTSSWRAH-DGSIWRV 65 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccC---------------------CCCceEEeeeEEec-CCcEEEE
Confidence 4457888899999999996666666789999999751 13366666667776 7777777
Q ss_pred EeCC--CCCCcccCc--------------------------eEEeccCCeEEEEEccC--CCEEEEEecCCcEEEEEcCC
Q 014302 218 SWGP--DGRFPGLGT--------------------------PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNT 267 (427)
Q Consensus 218 ~~sp--dg~~l~~~~--------------------------~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~ 267 (427)
.|.+ -|+.+++.. .+......|+.++|.|. |-.||+++.||.+|||+...
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 7754 455544221 12224578999999985 45788999999999998643
Q ss_pred CCc-ccc-------------ccCCCCeeEEEECCC---CCEEEEEEcCC----ceeeeeeeCCCCCCccccccccccccc
Q 014302 268 WTS-EPW-------------SSTSGFVTGATWDPE---GRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDI 326 (427)
Q Consensus 268 ~~~-~~~-------------~~~~~~v~~v~~spd---g~~l~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
... ..+ ..+.....++.|+|. ..+|+.++.++ +..+++...+....+. . . .
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~---k---v--a 217 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL---K---V--A 217 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee---e---e--h
Confidence 321 111 136677889999973 35777776653 1334444333210100 0 0 0
Q ss_pred eeeccCCceeEEEECCC----CCEEEEEEecCCCcceeEEEEEEeccCce-E-----------EEeeeeeeeCCCCCC-C
Q 014302 327 VSLTGSQGIEKIAWDAS----GERLAVSYKGGDDIYKGLIAIYDARRTPL-I-----------SLSLIGFIRGPGDNP-K 389 (427)
Q Consensus 327 ~~~~~~~~i~~v~~sp~----g~~La~~~~~~~d~~~g~i~vwd~~~~~~-~-----------~~~~~~~~~~~~~~~-~ 389 (427)
....+..+|++++|.|+ -..||+ ++.| | |+||.++.... + .-.+.-.+....++. .
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAv---A~kD---g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAV---ATKD---G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEE---eecC---c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 01134458999999986 346777 5655 5 99999974210 0 000111111111111 2
Q ss_pred ceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302 390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 422 (427)
Q Consensus 390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~ 422 (427)
+-.+.|.= -|.+|+...+||.+.+|-.-|.
T Consensus 291 VWrv~wNm---tGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 291 VWRVRWNM---TGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred eEEEEEee---eeeEEeecCCCceeeehhhhhh
Confidence 33444543 3778888889999999986664
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=4.3e-11 Score=115.09 Aligned_cols=198 Identities=16% Similarity=0.286 Sum_probs=122.2
Q ss_pred ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~~ 174 (427)
.+...+|+|||++||.+..+ ..|++|++..+ .... ...+...+.+++|+|||+.++.+... + .|.+|++.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--QREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--CEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-
Confidence 47888999999999987654 47899998766 2222 22345567789999999666655433 3 46666665
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
++ . ..+ +. .+........|+|||++|+..
T Consensus 267 --------~~--------------~--~~~-l~--------------------------~~~~~~~~~~~s~dg~~l~~~ 295 (417)
T TIGR02800 267 --------GK--------------Q--LTR-LT--------------------------NGPGIDTEPSWSPDGKSIAFT 295 (417)
T ss_pred --------CC--------------C--EEE-CC--------------------------CCCCCCCCEEECCCCCEEEEE
Confidence 11 0 000 00 011122345789999988754
Q ss_pred e-cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302 255 K-FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 255 ~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
+ .++ .|+++|+.+++...+..+......+.|+|+|++++++..+.+ .++.+++...... .+
T Consensus 296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--------------~l 361 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--------------VL 361 (417)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--------------Ec
Confidence 4 333 477778776665444445566778999999999998766543 4566665542110 01
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
.........+|+|||++|+........ ..+++.+....
T Consensus 362 ~~~~~~~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g~ 399 (417)
T TIGR02800 362 TDTGLDESPSFAPNGRMILYATTRGGR---GVLGLVSTDGR 399 (417)
T ss_pred cCCCCCCCceECCCCCEEEEEEeCCCc---EEEEEEECCCc
Confidence 111123456899999999886554432 45777665443
No 206
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=4.6e-11 Score=114.94 Aligned_cols=199 Identities=15% Similarity=0.158 Sum_probs=113.7
Q ss_pred ceeeeEEcCCCCEEEEEeC-CC--eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-Ce--EEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISG-ST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GG--ICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~--i~iw~~~~ 174 (427)
.+.+.+|||||++|+..+. ++ .|.+||+..+ ....+. ...+....++|+|||+.++.+... +. |.+|+++
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--~~~~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~- 294 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--VREKVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA- 294 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCC--CeEEec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-
Confidence 5678899999999987654 33 5777777665 222222 222344578999999666555443 54 4444543
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE-
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA- 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~- 253 (427)
++ ... .+..+.......+|+|||++|+.
T Consensus 295 --------tg--------------~~~-----------------------------~lt~~~~~~~~p~wSpDG~~I~f~ 323 (448)
T PRK04792 295 --------TK--------------ALT-----------------------------RITRHRAIDTEPSWHPDGKSLIFT 323 (448)
T ss_pred --------CC--------------CeE-----------------------------ECccCCCCccceEECCCCCEEEEE
Confidence 11 000 01111123445789999998874
Q ss_pred EecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302 254 AKFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 254 ~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
+..++. |+++|+.+++..............+|+|||++|++.....+ .|+.+++....... +
T Consensus 324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~------l-------- 389 (448)
T PRK04792 324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV------L-------- 389 (448)
T ss_pred ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE------c--------
Confidence 433444 66667766655433323333456799999999998766554 34445544431100 0
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
..........|+|||++|+.+...... +.|++++.....
T Consensus 390 t~~~~d~~ps~spdG~~I~~~~~~~g~---~~l~~~~~~G~~ 428 (448)
T PRK04792 390 TSTRLDESPSVAPNGTMVIYSTTYQGK---QVLAAVSIDGRF 428 (448)
T ss_pred cCCCCCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCc
Confidence 000112345799999999885433222 558888875443
No 207
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.1e-10 Score=112.58 Aligned_cols=200 Identities=13% Similarity=0.184 Sum_probs=118.0
Q ss_pred ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~~ 174 (427)
.+...+|+|||++||..+.+ ..|.+|++..+ ....+ ....+.+..++|+|||+.++.+... + .|.+|+++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~- 275 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--RREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA- 275 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--CEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-
Confidence 57888999999999877644 36788888766 22222 2233445678999999666544433 3 35556665
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
++ .... + ..+........|+|||+.|+..
T Consensus 276 --------~~--------------~~~~---l--------------------------t~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 276 --------SR--------------QLSR---V--------------------------TNHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred --------CC--------------CeEE---c--------------------------ccCCCCcCCeEECCCCCEEEEE
Confidence 11 1000 0 0111223456799999988744
Q ss_pred e-cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302 255 K-FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 255 ~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
+ .++ .|+++|+.+++...+...........|+|||++|++....++ .++.+++...... .+
T Consensus 305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--------------~l 370 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--------------IL 370 (430)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--------------Ec
Confidence 4 344 477777776665443322334456789999999998765543 3555555443110 00
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
..........|+|||++|+.+...... ..|.++++.....
T Consensus 371 t~~~~~~~p~~spdg~~i~~~~~~~g~---~~l~~~~~~g~~~ 410 (430)
T PRK00178 371 TDTSLDESPSVAPNGTMLIYATRQQGR---GVLMLVSINGRVR 410 (430)
T ss_pred cCCCCCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce
Confidence 111122356899999999886443322 5588888765443
No 208
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=1.1e-09 Score=102.16 Aligned_cols=267 Identities=17% Similarity=0.247 Sum_probs=157.4
Q ss_pred ceeeeEEcCCCCEEEEEeC----CCeEEEEEccCCCCcceee--ccCCcCCeeEEEEccCCCceEEEec-CCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDSGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~----d~~v~vwd~~~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~ 173 (427)
...-++++|++++|.+... ++.|..|.++........+ ..........++.+|++..++++.. .+.+.+++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567889999998888766 5799999888751112111 1113445678999999944444443 4889999997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~ 253 (427)
.++... .....+... .. .|+- .+.......++.++|+|+++++
T Consensus 118 ~~g~l~---------------------~~~~~~~~~------g~--g~~~--------~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 118 DDGSLG---------------------EVVQTVRHE------GS--GPNP--------DRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp TTSEEE---------------------EEEEEEESE------EE--ESST--------TTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcccc---------------------eeeeecccC------CC--CCcc--------cccccccceeEEECCCCCEEEE
Confidence 221100 000000000 00 0100 0112345778999999999986
Q ss_pred Ee-cCCcEEEEEcCCCCc--cc----cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302 254 AK-FDGTFYLWETNTWTS--EP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 326 (427)
Q Consensus 254 ~~-~dg~v~iwd~~~~~~--~~----~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
.. ....|++|++..... .. .......-..++|+|+|+++++.....+.+..+++......+........++.
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~- 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE- 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET-
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc-
Confidence 54 345799999977652 11 12556678899999999999998888888988888843222211111001111
Q ss_pred eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCce
Q 014302 327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL 404 (427)
Q Consensus 327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~ 404 (427)
..........++++|||++|.++..+. ..|.+|++. ++.+..+ +.+...+. .|..|++.|+ |..
T Consensus 240 -~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~~---~~~~~~G~--~Pr~~~~s~~---g~~ 305 (345)
T PF10282_consen 240 -GFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTLV---QTVPTGGK--FPRHFAFSPD---GRY 305 (345)
T ss_dssp -TSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEEE---EEEEESSS--SEEEEEE-TT---SSE
T ss_pred -cccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEEE---EEEeCCCC--CccEEEEeCC---CCE
Confidence 111222678999999999999976564 359999993 3444322 22322222 2778999875 666
Q ss_pred eEEEe-eCceEEEEec
Q 014302 405 LSVCW-SSGFCCTYPL 419 (427)
Q Consensus 405 l~v~~-~~g~i~~~~~ 419 (427)
|.|+. .++.|.+|.+
T Consensus 306 l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 306 LYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEecCCCeEEEEEE
Confidence 66665 6778988875
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.39 E-value=1.8e-11 Score=105.06 Aligned_cols=178 Identities=16% Similarity=0.277 Sum_probs=135.8
Q ss_pred CCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEc-cCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEE
Q 014302 94 VHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDY-EDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICI 169 (427)
Q Consensus 94 ~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~-~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~i 169 (427)
.+.+.+| .|++++|+|..++|++++.|....||.. +.+..++......+...++++.|+|.+ +.+|+|+. ..|.|
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isV 126 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISV 126 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEE
Confidence 3445555 8999999999999999999999999998 444555666666788999999999999 67777765 77889
Q ss_pred EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------------
Q 014302 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------------ 231 (427)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------------ 231 (427)
|-.+ +...|.....++.+....|+++.|+|++-+++.|..
T Consensus 127 cy~E----------------------~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp 184 (361)
T KOG1523|consen 127 CYYE----------------------QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP 184 (361)
T ss_pred EEEe----------------------cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC
Confidence 8876 122555666677777889999999999988776541
Q ss_pred -----------------EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEE
Q 014302 232 -----------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMI 292 (427)
Q Consensus 232 -----------------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l 292 (427)
.....+.+..+.|+|+|..|+-.+.|..+.+-|...... .......-+..++.|-.+...+
T Consensus 185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVV 264 (361)
T ss_pred CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCcee
Confidence 122456799999999999999888899999999876653 2222334677788887766555
Q ss_pred EE
Q 014302 293 LL 294 (427)
Q Consensus 293 ~~ 294 (427)
+.
T Consensus 265 ~a 266 (361)
T KOG1523|consen 265 AA 266 (361)
T ss_pred ec
Confidence 43
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=4.3e-10 Score=98.55 Aligned_cols=234 Identities=9% Similarity=0.087 Sum_probs=148.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE-ecC--CeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCK--GGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~--~~i~iw~~~~~~~ 177 (427)
.+..+.|+.+...|..|+.||. ++|..+.-.+ ..........|..+=|+. .++|. +.+ ..+++.++.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K---- 76 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK---- 76 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc----
Confidence 4566779999999999998875 5776665422 111111223344455553 24433 323 346666665
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
....|..+.| ...|.++.+. -++|+++-.+
T Consensus 77 --------------------------------k~~~ICe~~f----------------pt~IL~VrmN--r~RLvV~Lee 106 (391)
T KOG2110|consen 77 --------------------------------KKTTICEIFF----------------PTSILAVRMN--RKRLVVCLEE 106 (391)
T ss_pred --------------------------------cCceEEEEec----------------CCceEEEEEc--cceEEEEEcc
Confidence 0111222222 2356666664 3456655543
Q ss_pred CcEEEEEcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302 258 GTFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 258 g~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
.|+|||++..+..... .+...+.++.+++.+.+|++-++.. +.+.+++..+.++. ...-.|.
T Consensus 107 -~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v------------~~I~aH~ 173 (391)
T KOG2110|consen 107 -SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV------------NTINAHK 173 (391)
T ss_pred -cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee------------eEEEecC
Confidence 4999999998873322 4566678888888888999854433 45566655553221 1112356
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
+.+.+++|+++|.+||+ +++.+ ..||||.+.+++.+.- |.+|.. ..+..+++|+|+ ++.|++..+.+
T Consensus 174 ~~lAalafs~~G~llAT---ASeKG--TVIRVf~v~~G~kl~e----FRRG~~-~~~IySL~Fs~d---s~~L~~sS~Te 240 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLAT---ASEKG--TVIRVFSVPEGQKLYE----FRRGTY-PVSIYSLSFSPD---SQFLAASSNTE 240 (391)
T ss_pred CceeEEEECCCCCEEEE---eccCc--eEEEEEEcCCccEeee----eeCCce-eeEEEEEEECCC---CCeEEEecCCC
Confidence 68999999999999999 44442 4699999999887633 333333 455778999997 66899999999
Q ss_pred eEEEEecc
Q 014302 413 FCCTYPLI 420 (427)
Q Consensus 413 ~i~~~~~~ 420 (427)
+||+|-|-
T Consensus 241 TVHiFKL~ 248 (391)
T KOG2110|consen 241 TVHIFKLE 248 (391)
T ss_pred eEEEEEec
Confidence 99999864
No 211
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.5e-10 Score=110.50 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=75.3
Q ss_pred EEEEEccCCCEEEE-EecCCcEEEEEc--CC--CCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCC
Q 014302 240 SILKWSPTGDYFFA-AKFDGTFYLWET--NT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPP 312 (427)
Q Consensus 240 ~~~~~sp~g~~l~~-~~~dg~v~iwd~--~~--~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~ 312 (427)
...+|||||+.|+. +..+|...+|.+ .. .....+......+..+.|||||+.|++....++ .|+++++.....
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 45789999998884 445676566644 32 112233344456778999999999998765543 566666554321
Q ss_pred Cccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 313 SLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
. .+. ....+..+.|+|||++|+.+...... ..|++|++..+....+
T Consensus 364 ~--------------~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 364 Y--------------QLTTSPENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRKI 410 (428)
T ss_pred E--------------EccCCCCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEEe
Confidence 0 011 11245778999999999875333222 5699999988776544
No 212
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=2.2e-09 Score=100.05 Aligned_cols=229 Identities=15% Similarity=0.238 Sum_probs=139.2
Q ss_pred ceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCCCccee--ec----------cCCcCCeeEEEEccCCCceEEEec-CCe
Q 014302 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACI--LT----------SDSQRDVKVLEWRPNGGRSLSVGC-KGG 166 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~~~~~~--~~----------~~~~~~v~~l~~sp~~~~~la~g~-~~~ 166 (427)
....++++|++++|+++.. +++|.+++++..+..... .. ........++.|+|+++.++++.. .+.
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 4567899999999988864 899999999875211111 11 012234678999999955555443 378
Q ss_pred EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP 246 (427)
Q Consensus 167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp 246 (427)
|.+|+++.... .+.... .+.. ....+-+.+.|+|
T Consensus 168 v~~~~~~~~~~---------------------~l~~~~-----------~~~~--------------~~G~GPRh~~f~p 201 (345)
T PF10282_consen 168 VYVYDIDDDTG---------------------KLTPVD-----------SIKV--------------PPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEE-TTS----------------------TEEEEE-----------EEEC--------------STTSSEEEEEE-T
T ss_pred EEEEEEeCCCc---------------------eEEEee-----------cccc--------------ccCCCCcEEEEcC
Confidence 88998871100 011100 0000 1245677899999
Q ss_pred CCCEEE-EEecCCcEEEEEcC--CCCcccc-----c----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302 247 TGDYFF-AAKFDGTFYLWETN--TWTSEPW-----S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 314 (427)
Q Consensus 247 ~g~~l~-~~~~dg~v~iwd~~--~~~~~~~-----~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~ 314 (427)
++++++ +...++.|.++++. .+..... . ........++++|||++|+++......|.++.+......+
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL 281 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence 999988 55567889999988 3322111 1 1223678899999999999988787888888885532222
Q ss_pred cccccccccccceee-ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCce
Q 014302 315 DAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPV 391 (427)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~ 391 (427)
.. .... ..+...+.++++|+|++|+++...+ +.|.+|++. ++.+..... .+ ....|.
T Consensus 282 ~~---------~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~~--~~----~~~~p~ 341 (345)
T PF10282_consen 282 TL---------VQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVGS--SV----PIPSPV 341 (345)
T ss_dssp EE---------EEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEE--EE----ESSSEE
T ss_pred EE---------EEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEecc--cc----cCCCCE
Confidence 10 1111 1233589999999999999974444 459999874 555432211 11 223477
Q ss_pred eEEe
Q 014302 392 AFSF 395 (427)
Q Consensus 392 ~~~f 395 (427)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8876
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.36 E-value=2.7e-11 Score=110.70 Aligned_cols=204 Identities=21% Similarity=0.313 Sum_probs=124.6
Q ss_pred CCcCCeeEEEEccCCCceEEEecCCeEEEEe-ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe
Q 014302 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWA-PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (427)
Q Consensus 141 ~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (427)
.|...|.++.|+.+. .++.++.|..+.+|. +..+.......+. ..+.. .......-.+.....-+-+--
T Consensus 12 r~~e~vc~v~w~~~e-ei~~~~dDh~~~~~~~~~~~s~~~~~~p~--df~pt-------~~h~~~rs~~~g~~~d~~~i~ 81 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EIYFVSDDHQIFKWSDVSRDSVEVAKLPD--DFVPT-------DMHLGGRSSGGGKGSDTLLIC 81 (737)
T ss_pred ccceeEEeecccccc-eEEEeccCceEEEeecccchhhhhhhCCc--ccCCc-------cccccccccCCCCCcceEEEE
Confidence 466678899999887 677777777666654 3311110000000 00000 000000000001122223334
Q ss_pred CCCCCCccc---Cc---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEE
Q 014302 220 GPDGRFPGL---GT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 293 (427)
Q Consensus 220 spdg~~l~~---~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 293 (427)
+.||++... +. .+..|.+.+.+-.|+|||.-|+++++||.|++|.-...-..........|.+++|.|+.+.++
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 567776321 11 245588999999999999999999999999999854333344447788999999999999888
Q ss_pred EEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 294 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 294 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
++..+.-.|+-+....+...+ ..|.+-|.++.|++....+++ |++| -..+|||.....++
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~W--------------kAHDGiiL~~~W~~~s~lI~s---gGED---~kfKvWD~~G~~Lf 221 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRW--------------RAHDGLVLSLSWSTQSNIIAS---GGED---FRFKIWDAQGANLF 221 (737)
T ss_pred EecCCeEEEeecccccceeEE--------------eccCcEEEEeecCccccceee---cCCc---eeEEeecccCcccc
Confidence 765444333333222222122 234557899999999999988 8888 55999998766555
Q ss_pred E
Q 014302 374 S 374 (427)
Q Consensus 374 ~ 374 (427)
.
T Consensus 222 ~ 222 (737)
T KOG1524|consen 222 T 222 (737)
T ss_pred c
Confidence 3
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.35 E-value=4.8e-12 Score=121.06 Aligned_cols=199 Identities=17% Similarity=0.228 Sum_probs=126.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~ 179 (427)
.|+|+.|...|.++++|+.|..++||.+++. .......+|.+.|+.++.+.+. .++|++ .|..|++|.+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~------ 262 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLP------ 262 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecC------
Confidence 6999999999999999999999999998777 5666678999999999999887 555555 55789999987
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
.+ .++. ++++|.+.|++++|+|-- +.+.||+
T Consensus 263 ---~~----------------~pvs--------------------------vLrghtgavtaiafsP~~----sss~dgt 293 (1113)
T KOG0644|consen 263 ---DG----------------APVS--------------------------VLRGHTGAVTAIAFSPRA----SSSDDGT 293 (1113)
T ss_pred ---CC----------------chHH--------------------------HHhccccceeeeccCccc----cCCCCCc
Confidence 11 2233 344456667777777643 5667788
Q ss_pred EEEEEcCCCCccccc------cCCCCeeEEEECCCCCEEEEEEcCC----------------------------------
Q 014302 260 FYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGS---------------------------------- 299 (427)
Q Consensus 260 v~iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~~~~~~~---------------------------------- 299 (427)
+++||.+ .....+. ....-+.++.|..++...++++.+.
T Consensus 294 ~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 294 CRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred eEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeee
Confidence 8888776 1111110 1222333344443333333322211
Q ss_pred --ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 300 --LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 300 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
-.+..|++..... .| ....+...+..|.++|-...++.+ ++.| |...|||+-.+..+..
T Consensus 373 ~~~~~~vwnl~~g~l---~H---------~l~ghsd~~yvLd~Hpfn~ri~ms--ag~d---gst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQL---LH---------NLMGHSDEVYVLDVHPFNPRIAMS--AGYD---GSTIIWDIWEGIPIKH 433 (1113)
T ss_pred eeeEeeeeecccchh---hh---------hhcccccceeeeeecCCCcHhhhh--ccCC---CceEeeecccCCccee
Confidence 1222222222200 00 011233478999999999999875 6666 7799999976654433
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=1.1e-09 Score=94.18 Aligned_cols=179 Identities=16% Similarity=0.227 Sum_probs=119.1
Q ss_pred CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcce
Q 014302 121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW 200 (427)
Q Consensus 121 ~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (427)
..|.||| +.. +..........+|.++.++++ .|++.-.+.|.||... .+ .
T Consensus 75 NkviIWD-D~k--~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~--~n----------------------~ 124 (346)
T KOG2111|consen 75 NKVIIWD-DLK--ERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFP--DN----------------------P 124 (346)
T ss_pred ceEEEEe-ccc--CcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcC--CC----------------------h
Confidence 4788999 322 344455566788999999876 4555567889999875 11 0
Q ss_pred eEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc---cccccC
Q 014302 201 TLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS---EPWSST 276 (427)
Q Consensus 201 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~---~~~~~~ 276 (427)
+.+..++.. -+|. +..+++-.-+...|| -|-.-|.|+|-|+...+. .....|
T Consensus 125 k~l~~~et~---------~NPk---------------GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH 180 (346)
T KOG2111|consen 125 KLLHVIETR---------SNPK---------------GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH 180 (346)
T ss_pred hheeeeecc---------cCCC---------------ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc
Confidence 111111111 1121 222222222334555 456679999999987766 334499
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC
Q 014302 277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 356 (427)
Q Consensus 277 ~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d 356 (427)
.+.|.+++.+-+|..+|+++..+..|++++..++... .+...-.....|.+|+|||++.+||+ .++.
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l----------~E~RRG~d~A~iy~iaFSp~~s~Lav---sSdK 247 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL----------QELRRGVDRADIYCIAFSPNSSWLAV---SSDK 247 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe----------eeeecCCchheEEEEEeCCCccEEEE---EcCC
Confidence 9999999999999999999888877888887775221 11222223448999999999999999 4555
Q ss_pred cceeEEEEEEecc
Q 014302 357 IYKGLIAIYDARR 369 (427)
Q Consensus 357 ~~~g~i~vwd~~~ 369 (427)
|+|+||.++.
T Consensus 248 ---gTlHiF~l~~ 257 (346)
T KOG2111|consen 248 ---GTLHIFSLRD 257 (346)
T ss_pred ---CeEEEEEeec
Confidence 8899999875
No 216
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.33 E-value=2e-09 Score=102.61 Aligned_cols=241 Identities=19% Similarity=0.308 Sum_probs=158.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEE-ccCCCceEEE-ec-CCeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEW-RPNGGRSLSV-GC-KGGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~-sp~~~~~la~-g~-~~~i~iw~~~~~~ 176 (427)
.+.++.+.+.+..++.++.|+.+.+|+...... ....... +...+..+.+ ++++..+++. +. ++.+.+|+...
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 143 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK-LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST-- 143 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCce-eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC--
Confidence 789999999999999999999999999887731 2222223 2236777777 7888524443 44 58899999870
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
..... ..+..|...+..++|+|+++++++++.
T Consensus 144 ----------------------~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~ 175 (466)
T COG2319 144 ----------------------PGKLI--------------------------RTLEGHSESVTSLAFSPDGKLLASGSS 175 (466)
T ss_pred ----------------------CCeEE--------------------------EEEecCcccEEEEEECCCCCEEEecCC
Confidence 00011 123446677889999999998888775
Q ss_pred -CCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302 257 -DGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 334 (427)
Q Consensus 257 -dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
|+.+++|++...... ....|...+..++|+|++..++.+...++.+..|+...... +.. ....+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~----------~~~~~~~~ 244 (466)
T COG2319 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL-LRS----------TLSGHSDS 244 (466)
T ss_pred CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE-Eee----------ecCCCCcc
Confidence 999999999885553 33468999999999999985555546666777664332110 000 00111112
Q ss_pred eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce-EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCce
Q 014302 335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 413 (427)
Q Consensus 335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~ 413 (427)
. ...|+|++.++++ ++.+ +.+++|++..... +... .+. .....++.|.|. +..+..+..++.
T Consensus 245 ~-~~~~~~~~~~~~~---~~~d---~~~~~~~~~~~~~~~~~~-----~~~--~~~v~~~~~~~~---~~~~~~~~~d~~ 307 (466)
T COG2319 245 V-VSSFSPDGSLLAS---GSSD---GTIRLWDLRSSSSLLRTL-----SGH--SSSVLSVAFSPD---GKLLASGSSDGT 307 (466)
T ss_pred e-eEeECCCCCEEEE---ecCC---CcEEEeeecCCCcEEEEE-----ecC--CccEEEEEECCC---CCEEEEeeCCCc
Confidence 2 2279999988875 5555 6699999987654 2111 222 233557788883 344444777788
Q ss_pred EEEEecc
Q 014302 414 CCTYPLI 420 (427)
Q Consensus 414 i~~~~~~ 420 (427)
+.+|++.
T Consensus 308 ~~~~~~~ 314 (466)
T COG2319 308 VRLWDLE 314 (466)
T ss_pred EEEEEcC
Confidence 8888643
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=3.2e-11 Score=108.95 Aligned_cols=275 Identities=16% Similarity=0.186 Sum_probs=172.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.|+.+.|+..|..|++|+.|..|.+|||.... .......+|...|....|-|... .++.++.++.+++=.+...+
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~-- 220 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG-- 220 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc--
Confidence 79999999999999999999999999998872 23445567999999888988642 35555667888876654111
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC--cccC-------------ce------EEeccC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--PGLG-------------TP------IRRGFG 237 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--l~~~-------------~~------~~~~~~ 237 (427)
.......+..| .++|..++.-|+... +.++ .+ ...+..
T Consensus 221 --------------------~~e~t~rl~~h-~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 221 --------------------YVENTKRLAPH-EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred --------------------ceecceecccc-cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 11111112222 556666666655433 1000 00 111222
Q ss_pred ---CeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcc-------ccc------cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 238 ---GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-------PWS------STSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 238 ---~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-------~~~------~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
..+.++..|... .+++++.|..+++||.+..... .+. .....|++++|+.++.-|+++-++.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe- 358 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE- 358 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc-
Confidence 456788888777 5669999999999998865432 111 3345689999998887777655544
Q ss_pred eeeeeeeCCCCCCccccccccc---cccceeecc---CCceeEEEE-CCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 301 TLGSIHFASKPPSLDAHLLPVD---LPDIVSLTG---SQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~i~~v~~-sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
.|+.++-.-... ....+.. .-....+++ ...|..+-| -|...|+++ |++- |.|.||+-++++++
T Consensus 359 ~IYLF~~~~~~G---~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS---GSDC---GhIFiW~K~t~eii 429 (559)
T KOG1334|consen 359 DIYLFNKSMGDG---SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS---GSDC---GHIFIWDKKTGEII 429 (559)
T ss_pred ceEEeccccccC---CCCCCCcchhhccchhhcccccccccceeeeccCccceEEe---cCcc---ceEEEEecchhHHH
Confidence 555542111111 0001110 000011111 124666654 599999988 5554 67999999998876
Q ss_pred EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 374 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
.. +.+-.. -+.|+..||. -.+||.+--+..|++|+=
T Consensus 430 ~~-----MegDr~--VVNCLEpHP~---~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 430 RF-----MEGDRH--VVNCLEPHPH---LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred HH-----hhcccc--eEeccCCCCC---CchhhccCCccceeeecC
Confidence 32 222222 2569999996 668998889999999974
No 218
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.32 E-value=1.1e-09 Score=112.86 Aligned_cols=282 Identities=14% Similarity=0.230 Sum_probs=165.4
Q ss_pred CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (427)
Q Consensus 98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~ 176 (427)
....|.++.+-++...|+.+..+|.|.+...+.. ..........-..+|.+++||||+..++.+.+++.+.+.+-+++-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 3447999999999999999999999988733222 111233333456789999999999555555556777765433110
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC--------CCCcc-----------cCceEEeccC
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--------GRFPG-----------LGTPIRRGFG 237 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--------g~~l~-----------~~~~~~~~~~ 237 (427)
..-. .+..-... ...--.+-|... |+..+ ....+. ...
T Consensus 154 --i~E~-------------------~l~~~~~~-~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd 210 (928)
T PF04762_consen 154 --ISEV-------------------PLDSDDFG-ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDD 210 (928)
T ss_pred --EEEe-------------------ecCccccC-CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCC
Confidence 0000 00000000 011112222211 11100 001122 344
Q ss_pred CeEEEEEccCCCEEEEEec---C---CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 238 GLSILKWSPTGDYFFAAKF---D---GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~---d---g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
.-..++|-.||+++|+++. . +.+|||+-. +...... ...+--.+++|.|.|+.+|++.... .-..+.+..+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~-~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP-DRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC-CCcEEEEEec
Confidence 5668999999999996654 2 469999865 4332221 2333345789999999999876533 2244555554
Q ss_pred CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCc
Q 014302 311 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 390 (427)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 390 (427)
.+--.+.+. +.. ......|..+.|++|+..||+.. .| .|.+|-..+...+.....-+-.. .. .
T Consensus 289 NGLrhgeF~-l~~-----~~~~~~v~~l~Wn~ds~iLAv~~---~~----~vqLWt~~NYHWYLKqei~~~~~--~~--~ 351 (928)
T PF04762_consen 289 NGLRHGEFT-LRF-----DPEEEKVIELAWNSDSEILAVWL---ED----RVQLWTRSNYHWYLKQEIRFSSS--ES--V 351 (928)
T ss_pred CCcEeeeEe-cCC-----CCCCceeeEEEECCCCCEEEEEe---cC----CceEEEeeCCEEEEEEEEEccCC--CC--C
Confidence 332222222 100 01223789999999999999964 22 29999999888765543333211 11 2
Q ss_pred eeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302 391 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 423 (427)
Q Consensus 391 ~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~ 423 (427)
..+.|||. ....|.+.+.+|++..|++-+..
T Consensus 352 ~~~~Wdpe--~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 352 NFVKWDPE--KPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred CceEECCC--CCCEEEEEecCCcEEEEEEEEEE
Confidence 34889997 45568888888999999887754
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.7e-09 Score=93.08 Aligned_cols=236 Identities=15% Similarity=0.163 Sum_probs=146.6
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCC--eeEEEEccCCCceEEEec-C------CeEEEEec
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD--VKVLEWRPNGGRSLSVGC-K------GGICIWAP 172 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la~g~-~------~~i~iw~~ 172 (427)
..+++|+.|..-+++|..+ -.+||+.+.-. .......+.++ +..+-|..+ .+..+|+ . +.+.|||-
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~k--e~~~r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFK--ESASRQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchh--hhhhhccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEEEEec
Confidence 4558999999999988654 57899887641 11111112222 222222222 2333332 2 45889984
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF 252 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~ 252 (427)
. ....|..+.| ...|.++.++++ .|+
T Consensus 83 ~------------------------------------k~~~i~el~f----------------~~~I~~V~l~r~--riV 108 (346)
T KOG2111|consen 83 L------------------------------------KERCIIELSF----------------NSEIKAVKLRRD--RIV 108 (346)
T ss_pred c------------------------------------cCcEEEEEEe----------------ccceeeEEEcCC--eEE
Confidence 3 1223333333 346778888765 455
Q ss_pred EEecCCcEEEEEcCCCC-ccc-cc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302 253 AAKFDGTFYLWETNTWT-SEP-WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 328 (427)
Q Consensus 253 ~~~~dg~v~iwd~~~~~-~~~-~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
+.- .+.|+||.....- ... +. .....+.+++=..+..+|++-+...|.+.+.++...... +....
T Consensus 109 vvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----------~p~~I 177 (346)
T KOG2111|consen 109 VVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----------APSII 177 (346)
T ss_pred EEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC----------CceEE
Confidence 544 6889999876332 211 11 222234444444456677777777778888888765221 01222
Q ss_pred eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302 329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 408 (427)
Q Consensus 329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~ 408 (427)
..|...|.+|+.+-+|..||+++.-+ -.|+|||..++..+.-...| .+.+...||+|.|+ ..+|||.
T Consensus 178 ~AH~s~Iacv~Ln~~Gt~vATaStkG-----TLIRIFdt~~g~~l~E~RRG-----~d~A~iy~iaFSp~---~s~Lavs 244 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQGTLVATASTKG-----TLIRIFDTEDGTLLQELRRG-----VDRADIYCIAFSPN---SSWLAVS 244 (346)
T ss_pred EcccCceeEEEEcCCccEEEEeccCc-----EEEEEEEcCCCcEeeeeecC-----CchheEEEEEeCCC---ccEEEEE
Confidence 34556899999999999999964433 35999999999887443222 34456889999997 7799999
Q ss_pred eeCceEEEEecc
Q 014302 409 WSSGFCCTYPLI 420 (427)
Q Consensus 409 ~~~g~i~~~~~~ 420 (427)
...|++|+|-+.
T Consensus 245 SdKgTlHiF~l~ 256 (346)
T KOG2111|consen 245 SDKGTLHIFSLR 256 (346)
T ss_pred cCCCeEEEEEee
Confidence 999999999874
No 220
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=3.7e-09 Score=92.95 Aligned_cols=232 Identities=17% Similarity=0.226 Sum_probs=144.2
Q ss_pred CCCceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCC-CcceeeccCCcCC----------eeEEEEccCCCceEEEe-cC
Q 014302 98 PEVDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSG-KDACILTSDSQRD----------VKVLEWRPNGGRSLSVG-CK 164 (427)
Q Consensus 98 ~~~~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~-~~~~~~~~~~~~~----------v~~l~~sp~~~~~la~g-~~ 164 (427)
.+..-..++++++|++|+++.. .+.|.|+-++..+ -........|.+. +-...+.|+++.++++. +.
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence 3445588999999999998865 4889998886541 1122222234444 77889999994444443 23
Q ss_pred CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEE
Q 014302 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKW 244 (427)
Q Consensus 165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~ 244 (427)
+.|.+|+++ ++. +.......-....+-+.+.|
T Consensus 167 Dri~~y~~~-dg~-----------------------------------------------L~~~~~~~v~~G~GPRHi~F 198 (346)
T COG2706 167 DRIFLYDLD-DGK-----------------------------------------------LTPADPAEVKPGAGPRHIVF 198 (346)
T ss_pred ceEEEEEcc-cCc-----------------------------------------------cccccccccCCCCCcceEEE
Confidence 778899887 111 00000000023456788999
Q ss_pred ccCCCEEE-EEecCCcEEEEEcCCC--Cccccc---------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302 245 SPTGDYFF-AAKFDGTFYLWETNTW--TSEPWS---------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 312 (427)
Q Consensus 245 sp~g~~l~-~~~~dg~v~iwd~~~~--~~~~~~---------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~ 312 (427)
+|++++.+ ++--+++|.+|..... +...+. ....+..++..++||++|.++......|..+.+.....
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 99999988 5566899999998774 221111 34567788999999999987655556777777766422
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCc
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKP 390 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~ 390 (427)
.+.- + .....++...+...|+++|++|+++...++ .|.+|.+. ++.+-.+. .-....+|
T Consensus 279 ~L~~----~----~~~~teg~~PR~F~i~~~g~~Liaa~q~sd-----~i~vf~~d~~TG~L~~~~------~~~~~p~P 339 (346)
T COG2706 279 KLEL----V----GITPTEGQFPRDFNINPSGRFLIAANQKSD-----NITVFERDKETGRLTLLG------RYAVVPEP 339 (346)
T ss_pred EEEE----E----EEeccCCcCCccceeCCCCCEEEEEccCCC-----cEEEEEEcCCCceEEecc------cccCCCCc
Confidence 1110 0 011122334688999999999999644443 38888774 44443111 11133458
Q ss_pred eeEEec
Q 014302 391 VAFSFH 396 (427)
Q Consensus 391 ~~~~f~ 396 (427)
+||.|.
T Consensus 340 vcv~f~ 345 (346)
T COG2706 340 VCVKFL 345 (346)
T ss_pred EEEEEc
Confidence 899885
No 221
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.32 E-value=2.8e-10 Score=96.54 Aligned_cols=197 Identities=13% Similarity=0.223 Sum_probs=135.0
Q ss_pred ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCceEEE-ecCCeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~~~i~iw~~~~~~~ 177 (427)
++++..|+.-. ++|.+++-|-+..|||++.+ ..........|.+.|.+++|...+..++|+ |.||.++++|+..
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~--- 228 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS--- 228 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc---
Confidence 89999998755 58889999999999999987 222344455799999999999977667665 5679999999971
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEE-Ee
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFA-AK 255 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~-~~ 255 (427)
. + ...-.++... ...+...++|++.. +++|+ +-
T Consensus 229 ------l--------------e-HSTIIYE~p~------------------------~~~pLlRLswnkqDpnymATf~~ 263 (364)
T KOG0290|consen 229 ------L--------------E-HSTIIYEDPS------------------------PSTPLLRLSWNKQDPNYMATFAM 263 (364)
T ss_pred ------c--------------c-cceEEecCCC------------------------CCCcceeeccCcCCchHHhhhhc
Confidence 0 0 0000011110 02244557777644 46664 44
Q ss_pred cCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-CccccccccccccceeeccC
Q 014302 256 FDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (427)
....|.|.|++.... ..+..|.+.|..++|.|.....+++++++....+|++..... ... .| ......+
T Consensus 264 dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~---dP-----ilay~a~ 335 (364)
T KOG0290|consen 264 DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE---DP-----ILAYTAG 335 (364)
T ss_pred CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC---Cc-----hhhhhcc
Confidence 456799999997765 345599999999999998777667777777777888776422 111 11 1112244
Q ss_pred CceeEEEEC-CCCCEEEEEEec
Q 014302 333 QGIEKIAWD-ASGERLAVSYKG 353 (427)
Q Consensus 333 ~~i~~v~~s-p~g~~La~~~~~ 353 (427)
+.|+.+.|+ ....++++||.-
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ceeeeeeecccCCCEEEEEecC
Confidence 589999999 567899997543
No 222
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9.6e-10 Score=105.86 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=76.4
Q ss_pred EEEEEccCCCEEE-EEecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCc
Q 014302 240 SILKWSPTGDYFF-AAKFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSL 314 (427)
Q Consensus 240 ~~~~~sp~g~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~ 314 (427)
...+|+|||+.|+ +.+.++. |+++|+.+++...+..+......++|+|||+.|++.+..++ .++.+++.....
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-- 342 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-- 342 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--
Confidence 3578999999887 5566665 77778887766555555556778999999999988775443 455555543311
Q ss_pred cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
..+ . .........+|+|||++|+.+...... ..|.++|+.++...
T Consensus 343 ----~~L-----t--~~g~~~~~~~~SpDG~~l~~~~~~~g~---~~I~~~dl~~g~~~ 387 (448)
T PRK04792 343 ----SRL-----T--FEGEQNLGGSITPDGRSMIMVNRTNGK---FNIARQDLETGAMQ 387 (448)
T ss_pred ----EEE-----e--cCCCCCcCeeECCCCCEEEEEEecCCc---eEEEEEECCCCCeE
Confidence 000 0 011123456899999999886433222 34777888877654
No 223
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=1.9e-09 Score=103.63 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=110.7
Q ss_pred eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (427)
Q Consensus 122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (427)
.|.++|.+.. ....+. .+...+.+.+|+|||+.++.+... ..|.+|++. ++
T Consensus 171 ~l~~~d~~g~--~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~---------~g-------------- 224 (417)
T TIGR02800 171 ELQVADYDGA--NPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA---------TG-------------- 224 (417)
T ss_pred eEEEEcCCCC--CCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC---------CC--------------
Confidence 5666665433 233332 455578899999999555544432 457788876 11
Q ss_pred ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCcccccc
Q 014302 199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSS 275 (427)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~ 275 (427)
.... +..+.+.+..++|+|||+.|+ +.+.++ .|++||+.++....+..
T Consensus 225 ~~~~-----------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 225 QREK-----------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred CEEE-----------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence 0000 111122345678999998877 444444 58888988776655554
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
+........|+|||+.|++++...+ .++.+++..... ..+ ......+..+.|+|+|++|+.+...
T Consensus 276 ~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~------~~l-------~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 276 GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV------RRL-------TFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE------EEe-------ecCCCCccCeEECCCCCEEEEEEcc
Confidence 5555567899999999988765543 466665543210 000 1122356788999999999986443
Q ss_pred CCCcceeEEEEEEeccCceE
Q 014302 354 GDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~ 373 (427)
... ..|.+||+.++...
T Consensus 343 ~~~---~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 343 GGG---FNIAVMDLDGGGER 359 (417)
T ss_pred CCc---eEEEEEeCCCCCeE
Confidence 321 46999999876543
No 224
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.29 E-value=3.5e-09 Score=101.01 Aligned_cols=240 Identities=22% Similarity=0.305 Sum_probs=157.3
Q ss_pred ceeeeEE-cCCCC-EEEEEeC-CCeEEEEEccC-CCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccC
Q 014302 101 DLQGVSW-HQHKH-IVAFISG-STQVIVRDYED-SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~-sp~g~-~lat~~~-d~~v~vwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~ 174 (427)
.+..+.+ ++++. .++..+. |+.+++|+... . ........|...|..++|+|++. .++.+. ++.+++|++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCC--eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC
Confidence 4666666 88887 5555444 89999999987 3 35555667889999999999995 555443 79999999870
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFA 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~ 253 (427)
+ .... .+..|...+.+++|+|++. .+++
T Consensus 188 ---------~----------------~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 188 ---------G----------------KPLS--------------------------TLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred ---------C----------------ceEE--------------------------eeccCCCceEEEEEcCCcceEEEE
Confidence 0 1111 1222567889999999998 4445
Q ss_pred EecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302 254 AKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 331 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (427)
++.|+.|++||...+.... +..|.... -..|+|++..+++ +..++.+.+|++......+ .....+
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~-----------~~~~~~ 283 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS-GSSDGTIRLWDLRSSSSLL-----------RTLSGH 283 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE-ecCCCcEEEeeecCCCcEE-----------EEEecC
Confidence 5899999999888555543 44566554 3389999977774 4555577777776542200 000223
Q ss_pred CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE-ee
Q 014302 332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC-WS 410 (427)
Q Consensus 332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~-~~ 410 (427)
...|.++.|+|++..+++ ++.| +.+.+|++.......... ...... ....+.| +. . +..+.++ ..
T Consensus 284 ~~~v~~~~~~~~~~~~~~---~~~d---~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~-~~-~-~~~~~~~~~~ 349 (466)
T COG2319 284 SSSVLSVAFSPDGKLLAS---GSSD---GTVRLWDLETGKLLSSLT---LKGHEG--PVSSLSF-SP-D-GSLLVSGGSD 349 (466)
T ss_pred CccEEEEEECCCCCEEEE---eeCC---CcEEEEEcCCCceEEEee---ecccCC--ceEEEEE-CC-C-CCEEEEeecC
Confidence 458899999999999988 4444 349999888776543332 111111 2445666 42 1 4455555 56
Q ss_pred CceEEEEeccc
Q 014302 411 SGFCCTYPLIF 421 (427)
Q Consensus 411 ~g~i~~~~~~~ 421 (427)
++.+.+|++..
T Consensus 350 d~~~~~~~~~~ 360 (466)
T COG2319 350 DGTIRLWDLRT 360 (466)
T ss_pred CCcEEeeecCC
Confidence 77777776543
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=1.9e-11 Score=109.78 Aligned_cols=255 Identities=14% Similarity=0.164 Sum_probs=173.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.-..+.++.+|+.|+.|+.-|.+-.+|+.++ .......-...|.++.|-.+. +++|++..+.+.|||-.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD~~------- 199 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYDNN------- 199 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc---eeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEecCC-------
Confidence 5577899999999999999999999999887 333333445679999999877 89999999999999976
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK 243 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~ 243 (427)
+.+..|+. ....|..+.|-|.--+++... .++...+.+..|+
T Consensus 200 ----------------GtElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 200 ----------------GTELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK 258 (545)
T ss_pred ----------------CcEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence 44555554 345555566655444433221 1333456778888
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 322 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (427)
-+|-+..+-+|...|+|.+|...+.+. .....|.++|.++++.++|+|+++++-+. .+.+|++..... +..+..|.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr-~~kIWDlR~~~q-l~t~~tp~- 335 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR-KVKIWDLRNFYQ-LHTYRTPH- 335 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc-ceeEeeeccccc-cceeecCC-
Confidence 889888888999999999999887776 45668999999999999999999875444 777777776421 11111122
Q ss_pred cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC--ceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
+...+++|..|- ||.+ .|. .|.||.=... ..-.. -+++-. ....+..+.|.|.
T Consensus 336 -----------~a~~ls~Sqkgl-LA~~-~G~------~v~iw~d~~~~s~~~~~---pYm~H~-~~~~V~~l~FcP~-- 390 (545)
T KOG1272|consen 336 -----------PASNLSLSQKGL-LALS-YGD------HVQIWKDALKGSGHGET---PYMNHR-CGGPVEDLRFCPY-- 390 (545)
T ss_pred -----------Cccccccccccc-eeee-cCC------eeeeehhhhcCCCCCCc---chhhhc-cCcccccceeccH--
Confidence 568889998774 4442 233 2999953211 11100 011111 1112446778884
Q ss_pred CCceeEEEeeCceEEE
Q 014302 401 QGPLLSVCWSSGFCCT 416 (427)
Q Consensus 401 ~g~~l~v~~~~g~i~~ 416 (427)
..+|+||-+.|.-.+
T Consensus 391 -EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 391 -EDVLGIGHAGGITSI 405 (545)
T ss_pred -HHeeeccccCCceeE
Confidence 679999988885443
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.28 E-value=1e-10 Score=97.91 Aligned_cols=161 Identities=13% Similarity=0.160 Sum_probs=113.3
Q ss_pred CceeeeEEcC-CCC--EEEEEeCCCeEEEEEccCCC--------CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302 100 VDLQGVSWHQ-HKH--IVAFISGSTQVIVRDYEDSG--------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (427)
Q Consensus 100 ~~V~~l~~sp-~g~--~lat~~~d~~v~vwd~~~~~--------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~ 168 (427)
..|.|..|.- ++. +|+.|..+|.|.+||++.+. .+...-...|..+|.++.+.+.-..=+..|.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3677777644 333 67788899999999998851 112223345889999999987553444444456677
Q ss_pred EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG 248 (427)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g 248 (427)
.|+++.. ...+. ....+.....++..+.+-||+
T Consensus 231 ~~Sl~~s---------------------------~gslq--------------------~~~e~~lknpGv~gvrIRpD~ 263 (323)
T KOG0322|consen 231 MYSLNHS---------------------------TGSLQ--------------------IRKEITLKNPGVSGVRIRPDG 263 (323)
T ss_pred eeeeccc---------------------------cCccc--------------------ccceEEecCCCccceEEccCC
Confidence 8888610 00011 011223334578889999999
Q ss_pred CEEEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302 249 DYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 249 ~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~ 308 (427)
+.+|+++.|+.||||..++.+.... ..|...|++++|+|+...+|.+ +.+..|-.|+++
T Consensus 264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa-skD~rISLWkLY 323 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA-SKDARISLWKLY 323 (323)
T ss_pred cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc-cCCceEEeeecC
Confidence 9999999999999999999998544 4899999999999998888766 455477777653
No 227
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2e-09 Score=103.85 Aligned_cols=183 Identities=18% Similarity=0.246 Sum_probs=110.9
Q ss_pred eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (427)
Q Consensus 122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (427)
.+.++|.+.. ....+ ..+...+...+|+|||++++.++.+ ..|.+|++. ++
T Consensus 180 ~l~~~d~~g~--~~~~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~---------~g-------------- 233 (430)
T PRK00178 180 TLQRSDYDGA--RAVTL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD---------TG-------------- 233 (430)
T ss_pred EEEEECCCCC--CceEE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC---------CC--------------
Confidence 3556666543 23332 3455678999999999666555533 346667765 11
Q ss_pred ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCcccccc
Q 014302 199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSS 275 (427)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~ 275 (427)
....+. ...+.+...+|||||+.|+ +.+.++ .|++||+.+++...+..
T Consensus 234 ~~~~l~-----------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 234 RREQIT-----------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEcc-----------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence 101100 0112233578999999887 555555 58888998877655555
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302 276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
+......+.|+|||+.|++.+...+ .++.+++...... .+ . .........+|+|||++|+.+...
T Consensus 285 ~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~------~l-----t--~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 285 HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE------RV-----T--FVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE------Ee-----e--cCCCCccceEECCCCCEEEEEEcc
Confidence 5556677899999999988765543 4666655443110 00 0 011123457899999999886433
Q ss_pred CCCcceeEEEEEEeccCceEEE
Q 014302 354 GDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
... ..|.+||+.++....+
T Consensus 352 ~~~---~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 352 DGN---FHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCc---eEEEEEECCCCCEEEc
Confidence 222 4589999988776544
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.3e-10 Score=105.03 Aligned_cols=224 Identities=18% Similarity=0.284 Sum_probs=142.9
Q ss_pred eccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceee
Q 014302 138 LTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216 (427)
Q Consensus 138 ~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 216 (427)
...+|.+-|++++|+.+| .+|++|+| -.+.|||.- ..+++..+..
T Consensus 45 eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~-------------------------~~KllhsI~T-------- 90 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPF-------------------------EYKLLHSIST-------- 90 (758)
T ss_pred hhccccceecceeecCCC-CEEeecCCcceEEeecch-------------------------hcceeeeeec--------
Confidence 346899999999999999 78999987 668899985 2233332322
Q ss_pred eEeCCCCCCcccCceEEeccCCeEEEEEcc--CCCEEEEEecCCcEEEEEcCCCCc-----------cccccCCCCeeEE
Q 014302 217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGA 283 (427)
Q Consensus 217 ~~~spdg~~l~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~v 283 (427)
+|.+.|.++.|-| +.+.+++|..|..|+++|+...+. ..+..|...|..+
T Consensus 91 -----------------gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKri 153 (758)
T KOG1310|consen 91 -----------------GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRI 153 (758)
T ss_pred -----------------ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhe
Confidence 3667788888876 345677999999999999985331 1233788899999
Q ss_pred EECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEE
Q 014302 284 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLI 362 (427)
Q Consensus 284 ~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i 362 (427)
+-.|++...+-.++++|++++.++......-.....+..+.. ....--...++..+|... +||+ |+.|-+ .
T Consensus 154 a~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n--y~~~lielk~ltisp~rp~~laV---Ggsdpf---a 225 (758)
T KOG1310|consen 154 ATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN--YNPQLIELKCLTISPSRPYYLAV---GGSDPF---A 225 (758)
T ss_pred ecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH--hchhhheeeeeeecCCCCceEEe---cCCCch---h
Confidence 999999777777788889999999874211111101110000 000001567889998655 5666 777744 9
Q ss_pred EEEEecc-Cc-----------------eEEEeeeeeeeCC-C-CCCCcee---EEeccCCCCCceeEEEeeCceEEEEec
Q 014302 363 AIYDARR-TP-----------------LISLSLIGFIRGP-G-DNPKPVA---FSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 363 ~vwd~~~-~~-----------------~~~~~~~~~~~~~-~-~~~~~~~---~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
++||.+. .+ ++..-.-+.+... + ......| ++|.|+ |.-|.|.|+.-.+.+|++
T Consensus 226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN---GtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN---GTELLVSWGGEHVYLFDV 302 (758)
T ss_pred hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC---CcEEEEeeCCeEEEEEee
Confidence 9999431 11 0110001111111 1 1112333 455564 788999999999999997
Q ss_pred cccC
Q 014302 420 IFRS 423 (427)
Q Consensus 420 ~~~~ 423 (427)
-+..
T Consensus 303 n~~~ 306 (758)
T KOG1310|consen 303 NEDK 306 (758)
T ss_pred cCCC
Confidence 6654
No 229
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=4.1e-09 Score=100.72 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=73.2
Q ss_pred eEEEEEccCCCEEEEEe-cCC----cEEEEEcCCC---CccccccC-CCCeeEEEECCCCCEEEEEEcCCc--eeeeeee
Q 014302 239 LSILKWSPTGDYFFAAK-FDG----TFYLWETNTW---TSEPWSST-SGFVTGATWDPEGRMILLAFAGSL--TLGSIHF 307 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~-~dg----~v~iwd~~~~---~~~~~~~~-~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~ 307 (427)
....+|||||+.|+..+ .+| .+.+|++..+ ........ ......++|+|||+.|++.+..++ .++.+++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 34568999998888433 333 3444776653 22223322 234567899999999998775544 3444444
Q ss_pred CCCCCCccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 308 ASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
...... ...+. ....+...+|||||++|+.+...... ..|.+||+.++....++
T Consensus 313 ~~~g~~------------~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~---~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 313 DPEGQS------------PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV---RQICVYDLATGRDYQLT 367 (428)
T ss_pred cccccc------------eEEeccCCCCccceeECCCCCEEEEEEcCCCC---cEEEEEECCCCCeEEcc
Confidence 221000 01111 12356788999999999986433222 45999999988765443
No 230
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.4e-10 Score=100.78 Aligned_cols=195 Identities=19% Similarity=0.246 Sum_probs=123.6
Q ss_pred eEEEEccCCCceEEEe-cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC
Q 014302 147 KVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF 225 (427)
Q Consensus 147 ~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 225 (427)
..++|+.+| ..|+++ .|++++||++. ....+ +
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~P-------------------------s~~t~--l------------------- 180 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWP-------------------------SMLTI--L------------------- 180 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecC-------------------------cchhh--h-------------------
Confidence 789999999 566666 56999999975 00111 0
Q ss_pred cccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCC---CEEEEE-EcC
Q 014302 226 PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEG---RMILLA-FAG 298 (427)
Q Consensus 226 l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg---~~l~~~-~~~ 298 (427)
....|.+.|.++.|||||++|++-+.| ..+||+++++...... ........+.|+.|+ .+++++ ...
T Consensus 181 -----~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 181 -----EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred -----hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCC
Confidence 122367789999999999999988888 9999999998664433 333456678888776 333322 233
Q ss_pred Cceeeeee--eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 299 SLTLGSIH--FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 299 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
.+.+..++ +|.+...+. ..+.......|++|+.|+||+++|+ |+.+ |.|.|++..+.+++...
T Consensus 255 ~~~v~~~~~~~w~~~~~l~---------~~~~~~~~~siSsl~VS~dGkf~Al---GT~d---GsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLR---------LRKKIKRFKSISSLAVSDDGKFLAL---GTMD---GSVAIYDAKSLQRLQYV 319 (398)
T ss_pred CCceeEEEeeeeccccccc---------hhhhhhccCcceeEEEcCCCcEEEE---eccC---CcEEEEEeceeeeeEee
Confidence 33444433 344311110 0111223347999999999999999 5655 66999999988887655
Q ss_pred eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
+..+. . ....+.|.|+... +.. ..++-++.+..
T Consensus 320 k~aH~----~--~VT~ltF~Pdsr~--~~s-vSs~~~~~v~~ 352 (398)
T KOG0771|consen 320 KEAHL----G--FVTGLTFSPDSRY--LAS-VSSDNEAAVTK 352 (398)
T ss_pred hhhhe----e--eeeeEEEcCCcCc--ccc-cccCCceeEEE
Confidence 43221 1 2447889987543 233 22444444443
No 231
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=5.3e-10 Score=96.97 Aligned_cols=229 Identities=17% Similarity=0.255 Sum_probs=144.3
Q ss_pred ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCc-CCeeEEEEccCCCceEEEecC-----CeEEEEec
Q 014302 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGCK-----GGICIWAP 172 (427)
Q Consensus 101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~-----~~i~iw~~ 172 (427)
.++.++|..+ ...+.+++.||+|++||+............++. .+..+++-+-.+ +++++|.. -.+.+||+
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDv 150 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDV 150 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEe
Confidence 4667777653 457889999999999999887555555555555 466777776565 78888843 45779999
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCce--------------------
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGTP-------------------- 231 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~-------------------- 231 (427)
.. ..+.+..+...+...|+++.|+| +-+++.+|++
T Consensus 151 R~------------------------~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 151 RS------------------------EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred cc------------------------ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 71 11224445544599999999999 4556665543
Q ss_pred EEeccCCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCCccccccC-------------CCCeeEEEECCCCCEEEEEEc
Q 014302 232 IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSST-------------SGFVTGATWDPEGRMILLAFA 297 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~v~~v~~spdg~~l~~~~~ 297 (427)
.-.+...|..+.|..++ +.|.+-+...+..+|++..+....+... -..+...-...+....+.++.
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT 286 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc
Confidence 01145668899998877 4577888899999999988775433311 111222211223444555544
Q ss_pred CCceeeeeeeCCC-CCCccccccccccccceeec--cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 298 GSLTLGSIHFASK-PPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 298 ~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
+.+...+..+.+. ......+. ..+. +..-|+++.|...+..|.+ |++| |.+.+|..+
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~--------a~l~g~~~eiVR~i~~~~~~~~l~T---GGED---G~l~~Wk~~ 346 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEP--------AILQGGHEEIVRDILFDVKNDVLYT---GGED---GLLQAWKVE 346 (376)
T ss_pred ccCceeEEEeeecccccccCcc--------ccccCCcHHHHHHHhhhcccceeec---cCCC---ceEEEEecC
Confidence 4444444444432 11111110 1111 1125788899988888866 8998 889999964
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=6e-11 Score=108.48 Aligned_cols=137 Identities=18% Similarity=0.317 Sum_probs=99.8
Q ss_pred CceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCC-------------C-------------cceeeccCCcCCeeEEEEc
Q 014302 100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSG-------------K-------------DACILTSDSQRDVKVLEWR 152 (427)
Q Consensus 100 ~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~-------------~-------------~~~~~~~~~~~~v~~l~~s 152 (427)
..|+|+.|-|.+. .++++-.+|.+.+||..... . .++....--.+.|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 3899999999776 66667788999898753310 0 0000001123478899999
Q ss_pred cCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceE
Q 014302 153 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPI 232 (427)
Q Consensus 153 p~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~ 232 (427)
|||+.+..++.|+.++|++.+ ...+.. .+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fd-------------------------t~eLlg--------------------------~m 328 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFD-------------------------TQELLG--------------------------VM 328 (636)
T ss_pred CCCceEEEEecCceEEEeecc-------------------------HHHHHH--------------------------HH
Confidence 999555556677999999987 101111 23
Q ss_pred EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECC
Q 014302 233 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDP 287 (427)
Q Consensus 233 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~sp 287 (427)
+...++..|++|||||+||++|++|.-|.||.+...+...+- +|+.+|..|+|.|
T Consensus 329 kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 329 KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 335678999999999999999999999999999877775553 9999999999986
No 233
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.7e-09 Score=100.37 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=113.9
Q ss_pred ceeeeEEcCCCCE-EEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEecc
Q 014302 101 DLQGVSWHQHKHI-VAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~-lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~ 173 (427)
......|+|||+. ++..+.+ ..|.++|+.++ +...+. ...+.+...+|+|||.+++.+... + .|.++++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg--~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG--KKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC--cEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 4567899999985 6654443 45777777655 333333 244556778999999766655543 3 34444443
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF- 252 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~- 252 (427)
.+ .... +..+........|+|||+.|+
T Consensus 266 ---------~g--------------~~~~-----------------------------LT~~~~~d~~p~~SPDG~~I~F 293 (419)
T PRK04043 266 ---------TK--------------TLTQ-----------------------------ITNYPGIDVNGNFVEDDKRIVF 293 (419)
T ss_pred ---------CC--------------cEEE-----------------------------cccCCCccCccEECCCCCEEEE
Confidence 11 1010 100111122346999998888
Q ss_pred EEecCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--------ceeeeeeeCCCCCCccccccccc
Q 014302 253 AAKFDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVD 322 (427)
Q Consensus 253 ~~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~ 322 (427)
+....+ .|+++|+.+++.......... ...|||||++|++..... ..|+++++....
T Consensus 294 ~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------- 360 (419)
T PRK04043 294 VSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------- 360 (419)
T ss_pred EECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------
Confidence 443444 477778877766444322222 358999999999877543 245555544331
Q ss_pred cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
...+...+......|+|||+.|+.+...+.. ..|.+.++......
T Consensus 361 ---~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~---~~L~~~~l~g~~~~ 405 (419)
T PRK04043 361 ---IRRLTANGVNQFPRFSSDGGSIMFIKYLGNQ---SALGIIRLNYNKSF 405 (419)
T ss_pred ---eEECCCCCCcCCeEECCCCCEEEEEEccCCc---EEEEEEecCCCeeE
Confidence 1111111223458899999999886433222 55778888665444
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3e-09 Score=98.36 Aligned_cols=270 Identities=14% Similarity=0.175 Sum_probs=155.3
Q ss_pred ceeeeEEcCCCCE-EEEEeCCCeEEEEEccCCCCcceeeccCCcC-CeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~-lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.-+.|..+|||++ ||+|..--.|++||+... .......... .|.-.-.+-|-...+.--.|.+|.+-..- |..
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~h 127 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRH 127 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc--Cee
Confidence 4567889999994 578888899999999876 2121112222 23333333333334444455555432211 000
Q ss_pred cccccCcccccccccCCCCcc---eeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302 179 ASVRSGAASFLGALSRGPGTR---WTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK 255 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 255 (427)
....+++.+..- ......+-......|+.+-. ..|++|. ++....++++++..++...+|++|+
T Consensus 128 ---------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNL-EqGrfL~---P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 128 ---------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL-EQGRFLN---PFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred ---------eeeecCcCCccccccCCCccEEEeecCcceEEEEc-ccccccc---ccccccccceeeeecCccceEEecc
Confidence 000000000000 00000000001111111111 1244443 4454567899999999999999999
Q ss_pred cCCcEEEEEcCCCCccccc-------cC-----CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-Cccccccccc
Q 014302 256 FDGTFYLWETNTWTSEPWS-------ST-----SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVD 322 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~-------~~-----~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~ 322 (427)
.+|.|..||.+........ .+ ...|+++.|+.+|-.+++|++.+ .++++++....+ ....|...+
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~- 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYEL- 272 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCcc-
Confidence 9999999999887642221 22 23499999999999999887666 778888877644 333443333
Q ss_pred cccceeeccCCceeEEEECCC--CCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302 323 LPDIVSLTGSQGIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400 (427)
Q Consensus 323 ~~~~~~~~~~~~i~~v~~sp~--g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 400 (427)
+|..+.|-+. +..|+++ +. ..++|||-.++...... . +... ...+++.|+
T Consensus 273 -----------pi~~l~~~~~~~q~~v~S~--Dk-----~~~kiWd~~~Gk~~asi-----E-pt~~--lND~C~~p~-- 324 (703)
T KOG2321|consen 273 -----------PIKKLDWQDTDQQNKVVSM--DK-----RILKIWDECTGKPMASI-----E-PTSD--LNDFCFVPG-- 324 (703)
T ss_pred -----------ceeeecccccCCCceEEec--ch-----HHhhhcccccCCceeec-----c-ccCC--cCceeeecC--
Confidence 7899999765 4456553 43 46999999888765221 1 1222 235667776
Q ss_pred CCceeEEEeeCceEEEEec
Q 014302 401 QGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 401 ~g~~l~v~~~~g~i~~~~~ 419 (427)
+-++-++..++.++.|-+
T Consensus 325 -sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 325 -SGMFFTANESSKMHTYYI 342 (703)
T ss_pred -CceEEEecCCCcceeEEc
Confidence 446666778888877643
No 235
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=7.8e-09 Score=100.23 Aligned_cols=212 Identities=16% Similarity=0.273 Sum_probs=144.0
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc--eeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
.++.+++.|++.+... +..+.+|......+.. ......|...+++.++||++ +++|+|. +|.|.+|.-- .
T Consensus 164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~-~---- 236 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDF-G---- 236 (792)
T ss_pred ccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEecc-c----
Confidence 5788899888776664 4567788877752111 11223477779999999999 7777774 5999999743 0
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
.. ......+.+.| |...|.+++|+++|.+|++|+..+.
T Consensus 237 --------------------------~~-~~~~t~t~lHW---------------H~~~V~~L~fS~~G~~LlSGG~E~V 274 (792)
T KOG1963|consen 237 --------------------------SS-DDSETCTLLHW---------------HHDEVNSLSFSSDGAYLLSGGREGV 274 (792)
T ss_pred --------------------------cc-cccccceEEEe---------------cccccceeEEecCCceEeecccceE
Confidence 00 11444556666 5568999999999999999999999
Q ss_pred EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeE
Q 014302 260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEK 337 (427)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~ 337 (427)
+.+|.+.+++...+.-..+.|..+.+|||+.+.+....+. .|..++..+... ++.+-..+. ++. .....+-.+.
T Consensus 275 Lv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN-qI~li~~~dl~~k~tIsgi~~~~--~~~-k~~~~~l~t~ 350 (792)
T KOG1963|consen 275 LVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDN-QIHLIKASDLEIKSTISGIKPPT--PST-KTRPQSLTTG 350 (792)
T ss_pred EEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCc-eEEEEeccchhhhhhccCccCCC--ccc-ccccccccee
Confidence 9999999999655557788999999999999888766554 777777765321 111111110 000 0001124578
Q ss_pred EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
++++|.-+-++.+ +-. |+|.+||+.+...+
T Consensus 351 ~~idpr~~~~vln--~~~----g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 351 VSIDPRTNSLVLN--GHP----GHVQFYDLYTDSTI 380 (792)
T ss_pred EEEcCCCCceeec--CCC----ceEEEEecccccee
Confidence 8999966666653 332 78999999765543
No 236
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.1e-07 Score=83.84 Aligned_cols=265 Identities=15% Similarity=0.231 Sum_probs=157.9
Q ss_pred ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeecc--CCcCCeeEEEEccCCCceEEEecC--CeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~la~g~~--~~i~iw~~~ 173 (427)
..+-|+|+|++++|.++-. +|.|-.|.++........+.. ....+-+.++.++++ ++|.++.. +.|.++-++
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcc
Confidence 5788999999998887744 477888888764112222111 122233789999999 66666654 888899887
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~ 253 (427)
..|... ..++.+.+. . .+.-.+.-...+....+.|++++|++
T Consensus 120 ~dG~l~---------------------~~v~~~~h~------------g-----~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 120 ADGSLQ---------------------PVVQVVKHT------------G-----SGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred cCCccc---------------------cceeeeecC------------C-----CCCCccccCCccceeeeCCCCCEEEE
Confidence 322210 111111111 0 00001111233677889999999996
Q ss_pred Eec-CCcEEEEEcCCCCcccc----ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302 254 AKF-DGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 328 (427)
Q Consensus 254 ~~~-dg~v~iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
..- --.|.+|++..++.... ......-..+.|+|++++..+.++-++++-+|........++.-.....+++ .
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~--d 239 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE--D 239 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc--c
Confidence 543 45699999987665322 2556677899999999999988888888888888775332221111011111 2
Q ss_pred eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302 329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 407 (427)
Q Consensus 329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v 407 (427)
+.+.....++..+|||++|.++-.+-+ .|.+|.+... ..+. ..+.....+. .|-.+.|.+. |.+|.+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~d-----sI~~f~V~~~~g~L~--~~~~~~teg~--~PR~F~i~~~---g~~Lia 307 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHD-----SIAVFSVDPDGGKLE--LVGITPTEGQ--FPRDFNINPS---GRFLIA 307 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCC-----eEEEEEEcCCCCEEE--EEEEeccCCc--CCccceeCCC---CCEEEE
Confidence 334457789999999999999644443 4888888532 2221 1122222222 2556667664 555554
Q ss_pred Eee-CceEEEEe
Q 014302 408 CWS-SGFCCTYP 418 (427)
Q Consensus 408 ~~~-~g~i~~~~ 418 (427)
... +..|.+|.
T Consensus 308 a~q~sd~i~vf~ 319 (346)
T COG2706 308 ANQKSDNITVFE 319 (346)
T ss_pred EccCCCcEEEEE
Confidence 443 44566654
No 237
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.8e-09 Score=104.22 Aligned_cols=252 Identities=17% Similarity=0.227 Sum_probs=149.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~ 175 (427)
.-..+.|+|-...++++.....|+|||++.+ ....-+ ......|+++.+-.+ ...+|++.+||.|+||+--.+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 4567889999999999988889999999877 121111 124457888888643 223566667799999975411
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 255 (427)
+. +..+. --+|++-.. .+....+.-.-+.|.....+|++++
T Consensus 1144 ~~--------------------~~~eL-------------VTaw~~Ls~------~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1144 KW--------------------KKPEL-------------VTAWSSLSD------QLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred cc--------------------CCcee-------------EEeeccccc------cCccCCCCCeeeehhhhCCeEEecC
Confidence 10 00011 112322100 0111111224577988888888777
Q ss_pred cCCcEEEEEcCCCCccccc--cCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCC-----Cccccccccccccce
Q 014302 256 FDGTFYLWETNTWTSEPWS--STSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPP-----SLDAHLLPVDLPDIV 327 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~ 327 (427)
.-..|+|||.....+..-. .....++++.-+- .|+.++.|..++ .++.++..-... .+..|...
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~ds~v~~~R~h~~~------- 1256 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPDSLVCVYREHNDV------- 1256 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC-ceEEeecccCCccccceeecccCCc-------
Confidence 7899999999876653222 3445566654432 367777665544 555555443211 11112111
Q ss_pred eeccCCceeEEEECCCCCE-EEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC-CceeEEeccCCCCCcee
Q 014302 328 SLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP-KPVAFSFHDKFKQGPLL 405 (427)
Q Consensus 328 ~~~~~~~i~~v~~sp~g~~-La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~g~~l 405 (427)
.+|..+.+.+.|-. |++ |+.+ |.|++||++....... ... ..+.++. ...++..|+. ..++
T Consensus 1257 -----~~Iv~~slq~~G~~elvS---gs~~---G~I~~~DlR~~~~e~~--~~i-v~~~~yGs~lTal~VH~h---apii 1319 (1387)
T KOG1517|consen 1257 -----EPIVHLSLQRQGLGELVS---GSQD---GDIQLLDLRMSSKETF--LTI-VAHWEYGSALTALTVHEH---APII 1319 (1387)
T ss_pred -----ccceeEEeecCCCcceee---eccC---CeEEEEecccCccccc--cee-eeccccCccceeeeeccC---CCee
Confidence 13888889886655 666 6666 7799999987532211 111 1122222 1446777764 6788
Q ss_pred EEEeeCceEEEEec
Q 014302 406 SVCWSSGFCCTYPL 419 (427)
Q Consensus 406 ~v~~~~g~i~~~~~ 419 (427)
|.|.. +.|.+|++
T Consensus 1320 AsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSL 1332 (1387)
T ss_pred eecCc-ceEEEEec
Confidence 98866 99999985
No 238
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.5e-09 Score=100.15 Aligned_cols=220 Identities=13% Similarity=0.223 Sum_probs=147.8
Q ss_pred cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe
Q 014302 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (427)
Q Consensus 140 ~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (427)
..|...|+.++|.|-...++.+.-++.+++|+++... +..+..+.++
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----------------~s~~~~~epi---------------- 337 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----------------KSAEKDVEPI---------------- 337 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----------------Cccccceeee----------------
Confidence 3477889999999988556665666999999996100 0000111111
Q ss_pred CCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----------cccccCCCCeeEEEECCC
Q 014302 220 GPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPE 288 (427)
Q Consensus 220 spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~v~~spd 288 (427)
-.++.|.++|.|++.+++++.+++|+.||+|+.|++....- ..+.+|...+..+++|+.
T Consensus 338 ----------~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~ 407 (577)
T KOG0642|consen 338 ----------LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST 407 (577)
T ss_pred ----------EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc
Confidence 14677899999999999999999999999999997763221 234489999999999998
Q ss_pred CCEEEEEEcCCceeeeeeeCCCCC-Cc---ccccccc--cccc-------------------------ceee-----cc-
Q 014302 289 GRMILLAFAGSLTLGSIHFASKPP-SL---DAHLLPV--DLPD-------------------------IVSL-----TG- 331 (427)
Q Consensus 289 g~~l~~~~~~~~~i~~~~~~~~~~-~~---~~~~~~~--~~~~-------------------------~~~~-----~~- 331 (427)
...|+++ +.+++++.|......+ ++ ..+..|. +... ...+ .+
T Consensus 408 ~~~Llsc-s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 408 KDRLLSC-SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred ccceeee-cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 8888865 4555888887665422 11 1111111 0000 0000 01
Q ss_pred --CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302 332 --SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 409 (427)
Q Consensus 332 --~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~ 409 (427)
...+..+.++|.+..... +.++ +.|+++|..++.++... + . ......++++.|+ |.-|+.|.
T Consensus 487 ~~~~~in~vVs~~~~~~~~~---~hed---~~Ir~~dn~~~~~l~s~----~-a--~~~svtslai~~n---g~~l~s~s 550 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFT---AHED---RSIRFFDNKTGKILHSM----V-A--HKDSVTSLAIDPN---GPYLMSGS 550 (577)
T ss_pred cccCccceEEecCCCCeeEe---cccC---Cceecccccccccchhe----e-e--ccceecceeecCC---CceEEeec
Confidence 125788899999988766 7777 66999999988765211 1 1 1122457889887 77899999
Q ss_pred eCceEEEEec
Q 014302 410 SSGFCCTYPL 419 (427)
Q Consensus 410 ~~g~i~~~~~ 419 (427)
.||++.++.+
T Consensus 551 ~d~sv~l~kl 560 (577)
T KOG0642|consen 551 HDGSVRLWKL 560 (577)
T ss_pred CCceeehhhc
Confidence 9999998865
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.16 E-value=2.1e-08 Score=100.55 Aligned_cols=262 Identities=11% Similarity=0.038 Sum_probs=149.3
Q ss_pred ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCc-----ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302 101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~ 174 (427)
.|..++.++.. .++++|+.||+|++|+....... ....+......+.++.+.+.++.+.+++.||.|++.+++.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence 66677776655 89999999999999998765222 1122233567899999999995555555669999999871
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEE-EEcc-CC-CEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSIL-KWSP-TG-DYF 251 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~-~~sp-~g-~~l 251 (427)
.+. ... ........+.+ ..+.+.+| ++.. .+ ..|
T Consensus 1130 ~~~----~~~--------------~~~~~ri~n~~-------------------------~~g~vv~m~a~~~~~~S~~l 1166 (1431)
T KOG1240|consen 1130 YNV----SKR--------------VATQVRIPNLK-------------------------KDGVVVSMHAFTAIVQSHVL 1166 (1431)
T ss_pred ccc----ccc--------------eeeeeeccccc-------------------------CCCceEEeecccccccceeE
Confidence 000 000 00000000000 11122222 2221 22 357
Q ss_pred EEEecCCcEEEEEcCCCCcc---ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302 252 FAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 328 (427)
Q Consensus 252 ~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
+.+..-+.|..||+++.... +.....+.|++++.+|.+.+++.|++.+ .+-.|++.=+.+... +.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G-~l~lWDLRF~~~i~s-----w~------ 1234 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWDLRFRVPILS-----WE------ 1234 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc-eEEEEEeecCceeec-----cc------
Confidence 78888999999999887652 2235668899999999999999887666 566666543321110 00
Q ss_pred eccCCceeEEEECCC---CCEEEEEEe-cCCCcceeEEEEEEeccCceEEEeeee----eee-C-CCC-C--CCceeEEe
Q 014302 329 LTGSQGIEKIAWDAS---GERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIG----FIR-G-PGD-N--PKPVAFSF 395 (427)
Q Consensus 329 ~~~~~~i~~v~~sp~---g~~La~~~~-~~~d~~~g~i~vwd~~~~~~~~~~~~~----~~~-~-~~~-~--~~~~~~~f 395 (427)
.....+|..|..+|. ..+.+++.. +. +-|.+|++.++.+....-.+ .+. . +.+ . ...++.-+
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~-----nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~ 1309 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSN-----NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS 1309 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCC-----CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee
Confidence 111126666666643 346655432 33 34999999988664332211 000 0 000 0 00111111
Q ss_pred ccCCCCCceeEEEeeCceEEEEecccc
Q 014302 396 HDKFKQGPLLSVCWSSGFCCTYPLIFR 422 (427)
Q Consensus 396 ~~~~~~g~~l~v~~~~g~i~~~~~~~~ 422 (427)
..-...+.++..|-+|++|..|+.-++
T Consensus 1310 ~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1310 CGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eecccCCceeeecCCccceeeccCCCc
Confidence 111123557777879999999997655
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=1.6e-08 Score=94.31 Aligned_cols=257 Identities=15% Similarity=0.183 Sum_probs=135.8
Q ss_pred eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccCCCCcccc
Q 014302 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGNAASV 181 (427)
Q Consensus 104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~~~~~~~ 181 (427)
.+.|+|||+++.+++.|+.|.++|+.+. +..... .-.....++++|+|| +++++++ .+.+.++|..
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i-~~G~~~~~i~~s~DG-~~~~v~n~~~~~v~v~D~~-------- 108 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATI-KVGGNPRGIAVSPDG-KYVYVANYEPGTVSVIDAE-------- 108 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEE-E-SSEEEEEEE--TT-TEEEEEEEETTEEEEEETT--------
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEE-ecCCCcceEEEcCCC-CEEEEEecCCCceeEeccc--------
Confidence 4679999999999999999999999887 332222 223457889999999 5555553 3999999987
Q ss_pred ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecCCcE
Q 014302 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTF 260 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v 260 (427)
....++.+... ....++ ....+..+.-+|....++.. -+.+.|
T Consensus 109 -----------------tle~v~~I~~~--------~~~~~~-----------~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 109 -----------------TLEPVKTIPTG--------GMPVDG-----------PESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp -----------------T--EEEEEE----------EE-TTT-----------S---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred -----------------cccceeecccc--------cccccc-----------cCCCceeEEecCCCCEEEEEEccCCeE
Confidence 11222222111 000000 12356677778888866644 445888
Q ss_pred EEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cc----c---------ccccc---
Q 014302 261 YLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SL----D---------AHLLP--- 320 (427)
Q Consensus 261 ~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~----~---------~~~~~--- 320 (427)
.+.|....+.. .............|+|++++++.+......+..++...... .+ . .|...
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 88887766542 23355667788999999999988776666666665544210 00 0 00000
Q ss_pred ------------------c---c---cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 321 ------------------V---D---LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 321 ------------------~---~---~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
+ + ......+...+.-.-+..+|++++|.+...-+.+ ..+|.|+|.++.+.....
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~viD~~tl~~~~~i 310 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQVIDKKTLKVVKTI 310 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EEEEECCGTEEEE-H
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC--CceEEEEECcCcceeEEE
Confidence 0 0 0001112222222667789999999995222333 267999999988654221
Q ss_pred eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc-eEEEEe
Q 014302 377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG-FCCTYP 418 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g-~i~~~~ 418 (427)
.. + ....++.+.|.++ ...++...|... +|.+|+
T Consensus 311 ~~----~--~~~~~~h~ef~~d--G~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 311 TP----G--PGKRVVHMEFNPD--GKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp HH----H--HT--EEEEEE-TT--SSEEEEEEE--TTEEEEEE
T ss_pred ec----c--CCCcEeccEECCC--CCEEEEEEecCCCEEEEEE
Confidence 10 1 1112667788776 233444455544 999997
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.1e-09 Score=100.65 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=160.6
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-------------cceeeccCCcCCeeEEEEccCCCceEEEecC-C
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-------------DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G 165 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-------------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~ 165 (427)
....|++|+....+||+|+.||.++|-.+.+... ..-....+|...|..+.|+.+. +-|.++.. |
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCc
Confidence 3669999999999999999999999987765411 0112335799999999999877 55565554 7
Q ss_pred eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc----cCceEEe-------
Q 014302 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG----LGTPIRR------- 234 (427)
Q Consensus 166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~----~~~~~~~------- 234 (427)
-|.+|.+- ++. .+-..+..+..+.|.+++|+.||..+. .|.++-+
T Consensus 94 lIiVWmly-----------------------kgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 94 LIIVWMLY-----------------------KGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred eEEEEeee-----------------------ccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 78899885 112 223345566688899999999998743 1222111
Q ss_pred -----ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc------------ccCCCCeeEEEEC--------CCC
Q 014302 235 -----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW------------SSTSGFVTGATWD--------PEG 289 (427)
Q Consensus 235 -----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~v~~v~~s--------pdg 289 (427)
.......+.||+|.+.++.+-..|.+.+||.+..-..+. ......+..++|. ||-
T Consensus 150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 112234677999999888888889999999864322111 1222335666764 456
Q ss_pred CEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 290 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 290 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
..|+++-.++ ...+.+-.+.+ .|+ .+..+-.|....|+++|..||+| |... -..=+..+
T Consensus 230 P~lavcy~nG-r~QiMR~eND~-------~Pv------v~dtgm~~vgakWnh~G~vLAvc--G~~~-----da~~~~d~ 288 (1189)
T KOG2041|consen 230 PRLAVCYANG-RMQIMRSENDP-------EPV------VVDTGMKIVGAKWNHNGAVLAVC--GNDS-----DADEPTDS 288 (1189)
T ss_pred CEEEEEEcCc-eehhhhhcCCC-------CCe------EEecccEeecceecCCCcEEEEc--cCcc-----cccCcccc
Confidence 6676654444 33222222110 111 11122367889999999999997 4321 01112222
Q ss_pred CceEEEeeee----eeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 370 TPLISLSLIG----FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 370 ~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
+.+.-.+|.| +++.++.... .++|... |--+|++ .|+.|.|-.+
T Consensus 289 n~v~Fysp~G~i~gtlkvpg~~It--~lsWEg~---gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 289 NKVHFYSPYGHIVGTLKVPGSCIT--GLSWEGT---GLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred ceEEEeccchhheEEEecCCceee--eeEEcCC---ceEEEEE-ecceEEEEee
Confidence 3333334443 4444444432 4556543 4445555 6777766543
No 242
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.10 E-value=5.5e-10 Score=107.28 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=146.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|+.++.+.+..++|+++.|..|+||-+..+ .++.+..+|.+.|++++|+|-- +++.+|++++||....-....
T Consensus 234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~ 307 (1113)
T KOG0644|consen 234 DITDLAVSSNNTMIAAASNDKVIRVWRLPDG--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV 307 (1113)
T ss_pred ccchhccchhhhhhhhcccCceEEEEecCCC--chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC
Confidence 8999999999999999999999999999888 6777888999999999999975 566779999999862111000
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceE---Ee--------ccCCeEEEEEccCC-
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPI---RR--------GFGGLSILKWSPTG- 248 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~---~~--------~~~~v~~~~~sp~g- 248 (427)
.++ ++.....-+.++.|...+....++..- +. +...+..+..+.+-
T Consensus 308 prp----------------------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~ 365 (1113)
T KOG0644|consen 308 PRP----------------------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS 365 (1113)
T ss_pred CCC----------------------CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc
Confidence 000 000011222233333333222222110 00 11111122222222
Q ss_pred CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302 249 DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 327 (427)
Q Consensus 249 ~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (427)
.+.+++-.+-.+.+|++.++... ...+|...+..+.++|-+..++.....++...+|++|...+. ..
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi------------k~ 433 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI------------KH 433 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc------------ee
Confidence 23445556777899999888764 444899999999999999888887788888999999986321 11
Q ss_pred eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
...+++.+..-+||+||..++.+ +. . |.++|.....
T Consensus 434 y~~gh~kl~d~kFSqdgts~~ls--d~-h---gql~i~g~gq 469 (1113)
T KOG0644|consen 434 YFIGHGKLVDGKFSQDGTSIALS--DD-H---GQLYILGTGQ 469 (1113)
T ss_pred eecccceeeccccCCCCceEecC--CC-C---CceEEeccCC
Confidence 12234567788999999999773 22 2 6688876643
No 243
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=7.1e-08 Score=91.72 Aligned_cols=124 Identities=11% Similarity=0.066 Sum_probs=77.1
Q ss_pred eEEEEEccCCCEEE-EEecC--CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCC
Q 014302 239 LSILKWSPTGDYFF-AAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPS 313 (427)
Q Consensus 239 v~~~~~sp~g~~l~-~~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~ 313 (427)
.....|||||+.|+ +.+.+ ..|+++|+.+++...+..+........|+|||+.|++.+...+ .|+.+++.....
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~- 313 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV- 313 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 44567899998777 44434 4588888877766555544444556789999999998876543 566666654321
Q ss_pred ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc---ceeEEEEEEeccCceEEEee
Q 014302 314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI---YKGLIAIYDARRTPLISLSL 377 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~---~~g~i~vwd~~~~~~~~~~~ 377 (427)
..+...+. ....|||||++||.+....+.. ....|.+.|+.++....++.
T Consensus 314 -------------~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 314 -------------EQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred -------------EeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 00000011 1248999999999865432110 11358889998887665543
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.10 E-value=3e-08 Score=92.48 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=120.8
Q ss_pred CEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccc
Q 014302 112 HIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 190 (427)
Q Consensus 112 ~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 190 (427)
+++ ++-..++.|.|.|..+. +...........-..+.|+|||.++++++.++.|.++|+. +.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~---------~~------ 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA---------TG------ 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT---------SS------
T ss_pred cEEEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC---------cc------
Confidence 344 44556899999887765 3333332222223457899999767777777999999997 11
Q ss_pred cccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecCCcEEEEEcCCCC
Q 014302 191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT 269 (427)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~ 269 (427)
+.+.. ++ .......+++|+||++++++ ..++.+.++|.++.+
T Consensus 69 ----------~~v~~--------------------------i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 69 ----------KVVAT--------------------------IK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp ----------SEEEE--------------------------EE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred ----------cEEEE--------------------------Ee-cCCCcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 12221 11 12345679999999999955 578999999999988
Q ss_pred ccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC
Q 014302 270 SEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD 341 (427)
Q Consensus 270 ~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 341 (427)
..... .....+.++.-+|....++++..+.+.++.+++.+... +. ...+..........|+
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~----------~~~i~~g~~~~D~~~d 180 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LK----------VTTIKVGRFPHDGGFD 180 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EE----------EEEEE--TTEEEEEE-
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cc----------eeeecccccccccccC
Confidence 64432 13456788888999987777777777888887766421 10 1122223356788999
Q ss_pred CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 342 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 342 p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
|+++|++++..+++ .|.++|.+++.++...
T Consensus 181 pdgry~~va~~~sn-----~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 181 PDGRYFLVAANGSN-----KIAVIDTKTGKLVALI 210 (369)
T ss_dssp TTSSEEEEEEGGGT-----EEEEEETTTTEEEEEE
T ss_pred cccceeeecccccc-----eeEEEeeccceEEEEe
Confidence 99999988655554 4999999888776543
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.1e-08 Score=90.38 Aligned_cols=210 Identities=14% Similarity=0.117 Sum_probs=135.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~ 175 (427)
.|..++.. ...|.+|-.+|.+++|....+. ....... ....++..+.-++..+.++|+|+. +-+.|||++.
T Consensus 107 ~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~- 182 (412)
T KOG3881|consen 107 SIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ- 182 (412)
T ss_pred cccchhhc--CCEEEEEecCCcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeeccc-
Confidence 44444432 2367777889999999988551 1122222 223568888888888889997765 5678999971
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEE
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFA 253 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~ 253 (427)
..+.+... --| ..+|.. .++ -.++.+.|-+. ...||+
T Consensus 183 --------------------------~~qiw~aK---------Nvp-nD~L~L--rVP---vW~tdi~Fl~g~~~~~fat 221 (412)
T KOG3881|consen 183 --------------------------SKQIWSAK---------NVP-NDRLGL--RVP---VWITDIRFLEGSPNYKFAT 221 (412)
T ss_pred --------------------------ceeeeecc---------CCC-Cccccc--eee---eeeccceecCCCCCceEEE
Confidence 11111111 000 011110 011 13445667666 778999
Q ss_pred EecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302 254 AKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 331 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (427)
++.-+.||+||.+.+.. ..+......++++...|+|+.++++. ..+.+..+++..+.. -++. .-..
T Consensus 222 ~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~kl--~g~~---------~kg~ 289 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGKL--LGCG---------LKGI 289 (412)
T ss_pred EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchhheecccCcee--eccc---------cCCc
Confidence 99999999999996665 23336678999999999999988764 444677777666421 0110 1112
Q ss_pred CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
.|.|+++..+|.+++||+ ++-|++ |+|+|+++..++
T Consensus 290 tGsirsih~hp~~~~las---~GLDRy---vRIhD~ktrkll 325 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLAS---CGLDRY---VRIHDIKTRKLL 325 (412)
T ss_pred cCCcceEEEcCCCceEEe---ecccee---EEEeecccchhh
Confidence 358999999999999999 567754 999999986554
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=2.3e-08 Score=87.07 Aligned_cols=260 Identities=14% Similarity=0.175 Sum_probs=153.8
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCC------------cCCeeEEEEccCCC--ceEEEec
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDS------------QRDVKVLEWRPNGG--RSLSVGC 163 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~------------~~~v~~l~~sp~~~--~~la~g~ 163 (427)
-|.++.|...|.+||+|..+|.|.++.-+..... .......| ...|..++|.+++. .+|.++.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 5789999999999999999999999765544211 11111112 34688999998764 3788889
Q ss_pred CCeEEEEeccCCCCccc----cccCccccccc--cc----CCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEE
Q 014302 164 KGGICIWAPSYPGNAAS----VRSGAASFLGA--LS----RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIR 233 (427)
Q Consensus 164 ~~~i~iw~~~~~~~~~~----~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~ 233 (427)
+.+|++|.+...+.... ...++...... ++ .+...+..+.+.+...+...|.+++++.|++...+..-++
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR 186 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR 186 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence 99999999873322110 00111111111 11 1122234455566655577788999999988644332211
Q ss_pred e------------------------ccCCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCCc-----ccc----------
Q 014302 234 R------------------------GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-----EPW---------- 273 (427)
Q Consensus 234 ~------------------------~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-----~~~---------- 273 (427)
. ...-|++..|+|.. ..++.++..|+|++-|++.... ..+
T Consensus 187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rs 266 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRS 266 (433)
T ss_pred eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchh
Confidence 1 11236667788855 4555777799999999984321 111
Q ss_pred --ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CC-CccccccccccccceeeccCC---ceeEEEECCCCC
Q 014302 274 --SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PP-SLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGE 345 (427)
Q Consensus 274 --~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~---~i~~v~~sp~g~ 345 (427)
...-..|..+.|+++|+++++ .+-.++.+|++.-. +. ++.-|... ..+...+.... .-..++|+.++.
T Consensus 267 ffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~l--r~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 267 FFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYL--RSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred hHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhH--HHHHHHHhhccchhheeEEEEcCCcc
Confidence 123357889999999999985 44447777777432 11 11111110 00111111111 235789999999
Q ss_pred EEEEEEecCCCcceeEEEEEEeccC
Q 014302 346 RLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 346 ~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
++++ |+-. ..+++|++..+
T Consensus 343 ~v~T---Gsy~---n~frvf~~~~g 361 (433)
T KOG1354|consen 343 YVMT---GSYN---NVFRVFNLARG 361 (433)
T ss_pred eEec---cccc---ceEEEecCCCC
Confidence 9988 6544 34888885433
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.1e-08 Score=88.61 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=148.4
Q ss_pred ceeeeEEcCCCCEEEEE-----eC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302 101 DLQGVSWHQHKHIVAFI-----SG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~-----~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw 170 (427)
.++++.|||-|.+|.+- .. .-.+++|++.+. .....+....+.. +++.|++|. .+.|--..+.+++|
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~-W~~qfs~dE-sl~arlv~nev~f~ 151 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNG-WVPQFSIDE-SLAARLVSNEVQFY 151 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcC-cccccccch-hhhhhhhcceEEEE
Confidence 68899999999998774 11 235679998874 2222222223333 689999987 55544455789999
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC--cc------cCce--EE-------
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--PG------LGTP--IR------- 233 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--l~------~~~~--~~------- 233 (427)
+... .+ .....+ +...++.+.++|.+.. ++ .|.+ ++
T Consensus 152 ~~~~-f~-----------------------~~~~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 152 DLGS-FK-----------------------TIQHKL---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred ecCC-cc-----------------------ceeeee---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 8861 00 000001 1444555666655332 11 0000 00
Q ss_pred ---------e-ccCCeEEEEEccCCCEEE---EEecCC---------cEEEEEcCCCCccccccCCCCeeEEEECCCCCE
Q 014302 234 ---------R-GFGGLSILKWSPTGDYFF---AAKFDG---------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRM 291 (427)
Q Consensus 234 ---------~-~~~~v~~~~~sp~g~~l~---~~~~dg---------~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~ 291 (427)
. ....--.+.|.+-|.-|+ +..-|. ++++++++...+..-....++|.+++|+|+|+.
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 0 011223567888887443 333444 488888874444333466899999999999988
Q ss_pred EEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 292 ILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 292 l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
+++.-+-- ..+.++++.... . .++ ..++=+.+-|+|.|++|+.+.-|. .+|.|-|||+.+.
T Consensus 285 F~VvyGfMPAkvtifnlr~~~-v-------~df-------~egpRN~~~fnp~g~ii~lAGFGN---L~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGKP-V-------FDF-------PEGPRNTAFFNPHGNIILLAGFGN---LPGDMEVWDVPNR 346 (566)
T ss_pred EEEEEecccceEEEEcCCCCE-e-------EeC-------CCCCccceEECCCCCEEEEeecCC---CCCceEEEeccch
Confidence 76543221 133333333321 0 011 223558889999999999853333 4488999999987
Q ss_pred ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEee-----CceEEEEe
Q 014302 371 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCWS-----SGFCCTYP 418 (427)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~~-----~g~i~~~~ 418 (427)
+++.. -......-+.|+|+ |+ +|+..++ |..+.+|.
T Consensus 347 K~i~~---------~~a~~tt~~eW~Pd---Ge~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 347 KLIAK---------FKAANTTVFEWSPD---GEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred hhccc---------cccCCceEEEEcCC---CcEEEEEeccccEEecCCeEEEE
Confidence 76621 12333456789997 54 4555444 45566665
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.4e-07 Score=85.78 Aligned_cols=260 Identities=16% Similarity=0.239 Sum_probs=153.8
Q ss_pred ceeeeEEcCCCCEEEEEeC-----------CCeEEEEEccCCCCcceeec-cCCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302 101 DLQGVSWHQHKHIVAFISG-----------STQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~-----------d~~v~vwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~~~~i~ 168 (427)
.|.-+.|||+.++|+|-+. ...++|||+.++.....-.. ......-.-..||-|+ +++|.-..++|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTGNSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEeccceEE
Confidence 6888999999999998642 26889999998822111111 1111112346899998 788877778899
Q ss_pred EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------------cC
Q 014302 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------------LG 229 (427)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------------~~ 229 (427)
|++.. ...++. .+.-....|..+.|+|.+.+++ ++
T Consensus 330 IyEtp-------------------------sf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~ 383 (698)
T KOG2314|consen 330 IYETP-------------------------SFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK 383 (698)
T ss_pred EEecC-------------------------ceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc
Confidence 99876 111111 1111245577888998887754 12
Q ss_pred ceEEe---ccCCeEEEEEccCCCEEEEEec-------C---CcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEE
Q 014302 230 TPIRR---GFGGLSILKWSPTGDYFFAAKF-------D---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA 295 (427)
Q Consensus 230 ~~~~~---~~~~v~~~~~sp~g~~l~~~~~-------d---g~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~ 295 (427)
+.++. +.-.-..+.|..+|.+|+.--. . ..+.|+.++.... .........|...+|-|.|..+++-
T Consensus 384 ~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 384 REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence 22322 1111223559999999884211 1 1366777766554 2333677889999999999988765
Q ss_pred EcCC--ceeeeeeeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 296 FAGS--LTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 296 ~~~~--~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
..+. .++..+.+... ...+ . ..++ ....+.+.|+|.|++++++...+.. |.+.++|+....
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~~l---V--k~~d-------k~~~N~vfwsPkG~fvvva~l~s~~---g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKPSL---V--KELD-------KKFANTVFWSPKGRFVVVAALVSRR---GDLEFYDTDYAD 528 (698)
T ss_pred EccccccceeEEEeecCCCchhh---h--hhhc-------ccccceEEEcCCCcEEEEEEecccc---cceEEEecchhh
Confidence 5544 23333333321 1111 0 0111 1256889999999999997666544 679999987422
Q ss_pred eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302 372 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g 412 (427)
+.. + +.-++..+..+-|.|. |.-+..+.+.+
T Consensus 529 ~k~------~-~~~eh~~at~veWDPt---GRYvvT~ss~w 559 (698)
T KOG2314|consen 529 LKD------T-ASPEHFAATEVEWDPT---GRYVVTSSSSW 559 (698)
T ss_pred hhh------c-cCccccccccceECCC---CCEEEEeeehh
Confidence 221 1 1122223446778886 55555555544
No 249
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=8.1e-09 Score=91.22 Aligned_cols=172 Identities=12% Similarity=0.147 Sum_probs=115.6
Q ss_pred cCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeE
Q 014302 140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (427)
Q Consensus 140 ~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (427)
.+|.+.|.++.||.++ ++|++|++ ..+++|.++.. .... ..+++....
T Consensus 53 ~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~-----~~~k--------------~~KPI~~~~----------- 101 (609)
T KOG4227|consen 53 REHTGCINALQFSHND-RFLASGGDDMHGRVWNVDEL-----MVRK--------------TPKPIGVME----------- 101 (609)
T ss_pred hhhccccceeeeccCC-eEEeecCCcceeeeechHHH-----Hhhc--------------CCCCceecc-----------
Confidence 3689999999999997 88888877 77999998700 0000 001111111
Q ss_pred eCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccC---CCCeeEEEECCCCCEEEEE
Q 014302 219 WGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST---SGFVTGATWDPEGRMILLA 295 (427)
Q Consensus 219 ~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~v~~spdg~~l~~~ 295 (427)
..|...|.+++|...+++|++|..+++|.+.|+.+.+..-...| .+.|..+.-+|-.+.+++.
T Consensus 102 --------------~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 102 --------------HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred --------------CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE
Confidence 12557899999999999999999999999999998887555444 4589999999988888765
Q ss_pred EcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 296 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 296 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
.+++.+..|++.+.+.. ..++ .....+.....+-|+|-...|+.. .+.. +-+.|||++...
T Consensus 168 -t~~~~V~~~D~Rd~~~~----~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~--~~~~---~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 168 -TRAKLVSFIDNRDRQNP----ISLV-----LPANSGKNFYTAEFHPETPALILV--NSET---GGPNVFDRRMQA 228 (609)
T ss_pred -ecCceEEEEeccCCCCC----Ccee-----eecCCCccceeeeecCCCceeEEe--cccc---CCCCceeecccc
Confidence 45556777777665311 1111 000112256788899887766554 3333 338899987543
No 250
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.2e-07 Score=87.74 Aligned_cols=271 Identities=15% Similarity=0.212 Sum_probs=156.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec----------C-CeEEE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------K-GGICI 169 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------~-~~i~i 169 (427)
.=+-+.|||-|.+|++-..-| |.+|-=.. -.......|. .|.-+.|||...+++.-+. + ..++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCcc---HHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 457889999999999987655 55884222 1233344565 6899999999954444441 2 56889
Q ss_pred EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--EE--------------
Q 014302 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--IR-------------- 233 (427)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--~~-------------- 233 (427)
||+. +|... .....++.. ...-.-+.||.|+++++.... +.
T Consensus 287 WDI~---------tG~lk-------------rsF~~~~~~-~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 287 WDIA---------TGLLK-------------RSFPVIKSP-YLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKS 343 (698)
T ss_pred EEcc---------ccchh-------------cceeccCCC-ccccceEEeccCCceeEEeccceEEEEecCceeeecccc
Confidence 9997 33100 011111111 333446789999988653221 10
Q ss_pred eccCCeEEEEEccCCCEEE--EEecC---CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCc-------
Q 014302 234 RGFGGLSILKWSPTGDYFF--AAKFD---GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL------- 300 (427)
Q Consensus 234 ~~~~~v~~~~~sp~g~~l~--~~~~d---g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~------- 300 (427)
..-.+|....|||.+..|| +-..+ ..+.+-.+.+++..... -+.-.-..+-|-.+|.+|++-...-.
T Consensus 344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 1235788899999999888 22222 34666666666543322 23333456778899999876432211
Q ss_pred --eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302 301 --TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 378 (427)
Q Consensus 301 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~ 378 (427)
.+-+.++..+. .|+ ........|...+|.|.|..+++.+..... .++.+|.+++.... ..
T Consensus 424 f~n~eIfrireKd-------Ipv-----e~velke~vi~FaWEP~gdkF~vi~g~~~k---~tvsfY~~e~~~~~-~~-- 485 (698)
T KOG2314|consen 424 FSNLEIFRIREKD-------IPV-----EVVELKESVIAFAWEPHGDKFAVISGNTVK---NTVSFYAVETNIKK-PS-- 485 (698)
T ss_pred EeeEEEEEeeccC-------CCc-----eeeecchheeeeeeccCCCeEEEEEccccc---cceeEEEeecCCCc-hh--
Confidence 11222222221 111 112233478999999999999986433332 56999998752210 00
Q ss_pred eeeeCCCCCCCceeEEeccCCCCCceeEEE---eeCceEEEEecccc
Q 014302 379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVC---WSSGFCCTYPLIFR 422 (427)
Q Consensus 379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~---~~~g~i~~~~~~~~ 422 (427)
.+.- -+......+.|.|. |..+.++ ...|.+.||+.-|+
T Consensus 486 -lVk~-~dk~~~N~vfwsPk---G~fvvva~l~s~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 486 -LVKE-LDKKFANTVFWSPK---GRFVVVAALVSRRGDLEFYDTDYA 527 (698)
T ss_pred -hhhh-hcccccceEEEcCC---CcEEEEEEecccccceEEEecchh
Confidence 1111 11123446778886 5544444 34789999998874
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=4.5e-08 Score=96.77 Aligned_cols=191 Identities=18% Similarity=0.249 Sum_probs=132.5
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCe-----eEEEEccCCCceEEEecC-CeEEEEeccCCC
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV-----KVLEWRPNGGRSLSVGCK-GGICIWAPSYPG 176 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~ 176 (427)
....+.-+...++.++.+..+.+||.... .......+...+ .-+-++++. -.+++|.- +.+.+|+.. ..
T Consensus 91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~---~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~-~d 165 (967)
T KOG0974|consen 91 FGAKLFEENKKIALVTSRNSLLIRDSKNS---SVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPH-ED 165 (967)
T ss_pred cccchhhhcceEEEEEcCceEEEEecccC---ceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEecc-cc
Confidence 33455566778899999999999998766 222222333222 122334444 56677765 889999875 11
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
+ .+ ..+.+|.+.+..+.|+-||+++++.++
T Consensus 166 n----------------------------------~p----------------~~l~GHeG~iF~i~~s~dg~~i~s~Sd 195 (967)
T KOG0974|consen 166 N----------------------------------KP----------------IRLKGHEGSIFSIVTSLDGRYIASVSD 195 (967)
T ss_pred C----------------------------------Cc----------------ceecccCCceEEEEEccCCcEEEEEec
Confidence 1 00 024568899999999999999999999
Q ss_pred CCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-CccccccccccccceeeccCC
Q 014302 257 DGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQ 333 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 333 (427)
|.++|+|++.+.+... -.+|...+..++|.|+ .+++++.+. +.+.|....... .++.|.. .
T Consensus 196 DRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~~~~l~~y~~h~g-------------~ 259 (967)
T KOG0974|consen 196 DRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC-TCRVWGVNGTQLEVYDEHSG-------------K 259 (967)
T ss_pred CcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce-EEEEEecccceehhhhhhhh-------------c
Confidence 9999999999988744 3389999999999998 777665444 777774443311 2333322 3
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
.|+.++.+++...+++ +++| |.+++|++...
T Consensus 260 ~iw~~~~~~~~~~~vT---~g~D---s~lk~~~l~~r 290 (967)
T KOG0974|consen 260 GIWKIAVPIGVIIKVT---GGND---STLKLWDLNGR 290 (967)
T ss_pred ceeEEEEcCCceEEEe---eccC---cchhhhhhhcc
Confidence 7899999887777766 7777 77999998653
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.3e-08 Score=88.55 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=133.5
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCC-CceEEEe-----cC-CeEEEEeccCC
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG-GRSLSVG-----CK-GGICIWAPSYP 175 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~la~g-----~~-~~i~iw~~~~~ 175 (427)
.+.+|+.|..+.|-- ..+.+++|+.... ......-|...|+.+++||.+ ...+|+= +. ..++||.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f---~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSF---KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCc---cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 477899988755543 3567899887764 222222356789999999984 3345441 22 66889987622
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC------------------------cccC--
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------------------------PGLG-- 229 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~------------------------l~~~-- 229 (427)
+....+... .-....-..+.|++-|.- ++..
T Consensus 205 ~~~~~~a~k-----------------------sFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 205 GQHQPVANK-----------------------SFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred cccchhhhc-----------------------cccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 210000000 000111123344433322 0100
Q ss_pred -ceEEe-ccCCeEEEEEccCCCEEE--EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--ceee
Q 014302 230 -TPIRR-GFGGLSILKWSPTGDYFF--AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLG 303 (427)
Q Consensus 230 -~~~~~-~~~~v~~~~~sp~g~~l~--~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~ 303 (427)
..+.. ..++|+++.|+|+|+.++ .|-+-.++.|||++..-. +.-..++-.++-|+|.|++|+.++-+. |.+-
T Consensus 262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence 11222 368999999999998777 566788999999874332 223566778899999999999887665 4555
Q ss_pred eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
+|++.+.+....-. -..-+-+.|+|||++++++..+-.-+-+..++||+.....
T Consensus 340 vwDv~n~K~i~~~~--------------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFK--------------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEeccchhhccccc--------------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 55555532110000 0134678999999999997554221112349999986543
No 253
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.8e-07 Score=77.92 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=111.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
+|++|...|..+-|++++.|+.+.-||++++ .....+.+|.+.|.++.-.....++|..+.||++++||..
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G--~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k------- 186 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDG--RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK------- 186 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCC--EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc-------
Confidence 7999999999888888889999999999998 6777888999999999984444488888888999999997
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEecc-CCeEEEEEccCCCEEEEEecCCc
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
++ ++++++....+. ..++.|. ..|-+++ -+..+|++|+ ...
T Consensus 187 --t~----------------k~v~~ie~yk~~-----------------~~lRp~~g~wigala--~~edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 187 --TQ----------------KHVSMIEPYKNP-----------------NLLRPDWGKWIGALA--VNEDWLVCGG-GPK 228 (325)
T ss_pred --cc----------------ceeEEeccccCh-----------------hhcCcccCceeEEEe--ccCceEEecC-CCc
Confidence 21 333333221000 0122222 2233444 4566888775 678
Q ss_pred EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
+.+|++++.++.........+..+.|-.| .++.++ ++..+..|.+..
T Consensus 229 lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l~G 275 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGG-EGNHVQSYTLNG 275 (325)
T ss_pred eeEEeccCCCceEEEecccceeEeeeecc--eEEEec-cccceeeeeecc
Confidence 99999999999877777888888888643 344443 333555555544
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.95 E-value=4.1e-07 Score=91.68 Aligned_cols=279 Identities=13% Similarity=0.271 Sum_probs=155.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|.++.|.-++.-|+.+...|.|.+-|.++. .......-..+|.+++||||++.+..+.++.++.+-+-++. +..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~--~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE--PIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccc---ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc--chh
Confidence 7899999999999999999999998766655 33333445678999999999944433444466554332200 000
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC--------CCCcc-----cCceEE--eccCCeEEEEEc
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--------GRFPG-----LGTPIR--RGFGGLSILKWS 245 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--------g~~l~-----~~~~~~--~~~~~v~~~~~s 245 (427)
- +... .+....+....+-|-.. |+..+ ..+.+. .....-..++|-
T Consensus 145 E-------------------~~L~-~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 145 E-------------------KPLD-ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR 204 (1265)
T ss_pred c-------------------cccc-cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc
Confidence 0 0000 00000111112222211 11100 000000 011234568999
Q ss_pred cCCCEEEEEe----cC-CcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302 246 PTGDYFFAAK----FD-GTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 319 (427)
Q Consensus 246 p~g~~l~~~~----~d-g~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (427)
-||+++|+.. .+ +.|++||.. +..... ....+--.+++|-|.|..+++..... ....+.+..+.+...++..
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-sd~~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-SDSDIVFFERNGLRHGEFV 282 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-CCCcEEEEecCCccccccc
Confidence 9999999632 23 789999977 333222 23344456899999999988654333 3334555554443333332
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 399 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 399 (427)
+..+. ....+..++|+.++..||+-...... ..|++|-+.+...+......+ +... -+.|+|.-
T Consensus 283 -l~~p~-----de~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~NyhWYLKq~l~~---~~~~----~~~W~p~~ 346 (1265)
T KOG1920|consen 283 -LPFPL-----DEKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNYHWYLKQELQF---SQKA----LLMWDPVT 346 (1265)
T ss_pred -cCCcc-----cccchheeeecCCCCceeeeeccccc---ceEEEEEecCeEEEEEEEEec---cccc----cccccCCC
Confidence 11111 11148999999999999984333332 459999998877654432222 2222 15677742
Q ss_pred CCCceeEEEeeCceEEEEeccccCC
Q 014302 400 KQGPLLSVCWSSGFCCTYPLIFRSH 424 (427)
Q Consensus 400 ~~g~~l~v~~~~g~i~~~~~~~~~~ 424 (427)
...|-+-..+|.+.+|+|.|..+
T Consensus 347 --~~~L~v~~~sG~~~v~~~~~~t~ 369 (1265)
T KOG1920|consen 347 --EKTLHVLRESGQRLVRDFAWTTD 369 (1265)
T ss_pred --ceeEEEEecCCcEEEEEEEEeee
Confidence 22344433788888888877543
No 255
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.94 E-value=1.6e-07 Score=94.51 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=126.4
Q ss_pred ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCc
Q 014302 135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ 213 (427)
Q Consensus 135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (427)
.....+.|...|..++.++....++++|++ |+|++|+... +.++....
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k-------------------------------~~~~~~s~ 1088 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK-------------------------------LEGEGGSA 1088 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehh-------------------------------hhcCccee
Confidence 444456788888899988776567777765 9999999871 11111111
Q ss_pred eeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---------cCCC-CeeEE
Q 014302 214 ITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------STSG-FVTGA 283 (427)
Q Consensus 214 v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~-~v~~v 283 (427)
-..+.|++. ...+..+...+.+..+|.++.||.|++.++......... ...+ .+..-
T Consensus 1089 rS~ltys~~-------------~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~ 1155 (1431)
T KOG1240|consen 1089 RSELTYSPE-------------GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH 1155 (1431)
T ss_pred eeeEEEecc-------------CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee
Confidence 123444442 346777888889999999999999999998763221111 1122 22333
Q ss_pred EECC-CCC-EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeE
Q 014302 284 TWDP-EGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL 361 (427)
Q Consensus 284 ~~sp-dg~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~ 361 (427)
+|.. .++ .|++++... .+..|+..... +.-..+.-..+|.|++++.+|.+.|++. |+.. |.
T Consensus 1156 a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~----------~~w~lk~~~~hG~vTSi~idp~~~Wlvi---Gts~---G~ 1218 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLS-RIVSWDTRMRH----------DAWRLKNQLRHGLVTSIVIDPWCNWLVI---GTSR---GQ 1218 (1431)
T ss_pred cccccccceeEEEEEecc-ceEEecchhhh----------hHHhhhcCccccceeEEEecCCceEEEE---ecCC---ce
Confidence 3332 233 455554333 33344433321 0001111224568999999999999999 6665 78
Q ss_pred EEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302 362 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL 419 (427)
Q Consensus 362 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~ 419 (427)
+.+||++-+..+.....+ .... ...+..+|.+.+.. .+.++. +.+.+.+|.+
T Consensus 1219 l~lWDLRF~~~i~sw~~P----~~~~--i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHP----ARAP--IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred EEEEEeecCceeecccCc----ccCC--cceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 999999877665332111 1122 22444455443333 344444 5667777764
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=2.4e-07 Score=95.99 Aligned_cols=252 Identities=17% Similarity=0.272 Sum_probs=143.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccC-------------C---------CCcceee--------------------
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-------------S---------GKDACIL-------------------- 138 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~-------------~---------~~~~~~~-------------------- 138 (427)
.|.+++||||+..||..+.++++.+.+-+- + +++..+.
T Consensus 122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~ 201 (928)
T PF04762_consen 122 GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV 201 (928)
T ss_pred cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence 899999999999999999898887643211 0 0000000
Q ss_pred ----ccCCcCCeeEEEEccCCCceEEEec-------CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhc
Q 014302 139 ----TSDSQRDVKVLEWRPNGGRSLSVGC-------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR 207 (427)
Q Consensus 139 ----~~~~~~~v~~l~~sp~~~~~la~g~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (427)
.. +...-..++|..|| .++|++. ...++||+-+ |. ++...
T Consensus 202 d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re--G~-------------------------L~stS 252 (928)
T PF04762_consen 202 DEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE--GE-------------------------LQSTS 252 (928)
T ss_pred ccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC--ce-------------------------EEecc
Confidence 00 23345678999999 6666552 2457899865 11 11111
Q ss_pred ccCCCceeeeEeCCCCCCcccCce---------------------EE--eccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302 208 SQNGEQITALSWGPDGRFPGLGTP---------------------IR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 264 (427)
Q Consensus 208 ~~~~~~v~~~~~spdg~~l~~~~~---------------------~~--~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 264 (427)
....+--.+++|.|.|++++..+. ++ .....|..++|++|+..||....|. |.+|-
T Consensus 253 E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 253 EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 111222347899999998764432 11 1235688999999999999766555 99998
Q ss_pred cCCCCc---ccc-ccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302 265 TNTWTS---EPW-SSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 339 (427)
Q Consensus 265 ~~~~~~---~~~-~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 339 (427)
+.+..= ..+ ......+..+.|+|... .|.+.+.++ .+..+++. +.++
T Consensus 332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g-~~~~~~~~---------------------------~~v~ 383 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG-QYEIYDFA---------------------------WDVS 383 (928)
T ss_pred eeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC-cEEEEEEE---------------------------EEEE
Confidence 766441 111 13334455699999654 344444423 22222221 1111
Q ss_pred EC----C-CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302 340 WD----A-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 414 (427)
Q Consensus 340 ~s----p-~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i 414 (427)
.+ | |...+|+. ++. ++.+-.++...+ -.|.+...-. -...+.+++|.+. +..+++-.++|.|
T Consensus 384 ~s~~~~~~D~g~vaVI--DG~-----~lllTpf~~a~V--PPPMs~~~l~-~~~~v~~vaf~~~---~~~~avl~~d~~l 450 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVI--DGN-----KLLLTPFRRAVV--PPPMSSYELE-LPSPVNDVAFSPS---NSRFAVLTSDGSL 450 (928)
T ss_pred ecCCCCccCceEEEEE--eCC-----eEEEecccccCC--CchHhceEEc-CCCCcEEEEEeCC---CCeEEEEECCCCE
Confidence 22 2 22234442 432 377766654321 1222222222 1234778999886 3449999999999
Q ss_pred EEEeccccC
Q 014302 415 CTYPLIFRS 423 (427)
Q Consensus 415 ~~~~~~~~~ 423 (427)
.+|.+.+..
T Consensus 451 ~~~~~~~~~ 459 (928)
T PF04762_consen 451 SIYEWDLKN 459 (928)
T ss_pred EEEEecCCC
Confidence 999966543
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.3e-07 Score=86.57 Aligned_cols=113 Identities=12% Similarity=0.225 Sum_probs=86.9
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302 235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP- 312 (427)
Q Consensus 235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~- 312 (427)
|.++|.++.++.+-..|.+++.|+.+..|+...... ..+......+.+++.+|||..|++++. .|..|++.++..
T Consensus 101 h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~kevv 177 (541)
T KOG4547|consen 101 HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIETKEVV 177 (541)
T ss_pred CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccCceEE
Confidence 678899999999989999999999999999988776 445577788999999999999987653 677888877632
Q ss_pred -CccccccccccccceeeccCCceeEEEECCC-----CCEEEEEEecCCCcceeEEEEEEecc
Q 014302 313 -SLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS-----GERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-----g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
.+.||. ++|+.++|-.+ |.++.++...... +.+|-+..
T Consensus 178 ~~ftgh~--------------s~v~t~~f~~~~~g~~G~~vLssa~~~r~-----i~~w~v~~ 221 (541)
T KOG4547|consen 178 ITFTGHG--------------SPVRTLSFTTLIDGIIGKYVLSSAAAERG-----ITVWVVEK 221 (541)
T ss_pred EEecCCC--------------cceEEEEEEEeccccccceeeeccccccc-----eeEEEEEc
Confidence 344444 47788888766 8888775434333 88887754
No 258
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.89 E-value=7.2e-09 Score=93.52 Aligned_cols=189 Identities=13% Similarity=0.186 Sum_probs=126.8
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~ 179 (427)
.|..+.|-|..-+|++++..|.++--|+..+ +.+.....-.+.+..++-+|-. .++-.|. .|+|.+|.-.
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G--klVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~------ 281 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTG--KLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPN------ 281 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechh--hhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCC------
Confidence 8999999999999999999999999999888 4444444455678888899987 6777775 4999999875
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
.. .++. .+-.|.++|.++++.++|+|+++.+.|..
T Consensus 282 ---sk----------------ePLv--------------------------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 282 ---SK----------------EPLV--------------------------KILCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred ---Cc----------------chHH--------------------------HHHhcCCCcceEEECCCCcEEeecccccc
Confidence 00 0011 12237789999999999999999999999
Q ss_pred EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302 260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 339 (427)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 339 (427)
++|||++................+++|.-|- || .+.++ .+.+|.......++.. .+-.... -.+.|..+.
T Consensus 317 ~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA-~~~G~----~v~iw~d~~~~s~~~~---~pYm~H~-~~~~V~~l~ 386 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LA-LSYGD----HVQIWKDALKGSGHGE---TPYMNHR-CGGPVEDLR 386 (545)
T ss_pred eeEeeeccccccceeecCCCccccccccccc-ee-eecCC----eeeeehhhhcCCCCCC---cchhhhc-cCcccccce
Confidence 9999999877532222245667788886553 33 33444 3444443111111110 0001111 123889999
Q ss_pred ECCCCCEEEEEEec
Q 014302 340 WDASGERLAVSYKG 353 (427)
Q Consensus 340 ~sp~g~~La~~~~~ 353 (427)
|+|-...|-+...+
T Consensus 387 FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 387 FCPYEDVLGIGHAG 400 (545)
T ss_pred eccHHHeeeccccC
Confidence 99988888774333
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=1.8e-06 Score=79.05 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=121.7
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEEccCCCCccee-eccC------CcCCeeEEEEccCCCceEEEe-c-CCeE
Q 014302 107 WHQHKHIVAFISG----------STQVIVRDYEDSGKDACI-LTSD------SQRDVKVLEWRPNGGRSLSVG-C-KGGI 167 (427)
Q Consensus 107 ~sp~g~~lat~~~----------d~~v~vwd~~~~~~~~~~-~~~~------~~~~v~~l~~sp~~~~~la~g-~-~~~i 167 (427)
+||||+.|.++.. +..|.|||..+. +... +..+ ....-..++++|||+.+++.- . +..+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 8999998777654 789999999887 2221 1111 112234789999995444444 3 4889
Q ss_pred EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-----cCceEEeccCCe---
Q 014302 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-----LGTPIRRGFGGL--- 239 (427)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-----~~~~~~~~~~~v--- 239 (427)
.+.|+....-...+... .....+. ...-..+....||+++. .+... .....+
T Consensus 131 ~VvD~~~~kvv~ei~vp-----------~~~~vy~--------t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~ 190 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVP-----------DCYHIFP--------TANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHP 190 (352)
T ss_pred EEEECCCCcEEEEEeCC-----------CCcEEEE--------ecCCccEEEeecCceEEEEecCCCceE-EeeeeeecC
Confidence 99998721110001111 0000000 00001122233443322 01100 000000
Q ss_pred ------EEEEEcc-CCCEEEEEecCCcEEEEEcCCCCcc---ccc----c------CCCCeeEEEECCCCCEEEEEEcCC
Q 014302 240 ------SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE---PWS----S------TSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 240 ------~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~---~~~----~------~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
..-.|++ +|+++++... |.|.+.|+...... .+. . ..+...-++++|+|+++++.....
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 0003455 8888887776 99999996543321 111 0 122334489999999888743221
Q ss_pred ---------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEecc
Q 014302 300 ---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 300 ---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
+.+.+++....+ ....+..+..+..++++|||+ +|.++...+ +.|.++|+.+
T Consensus 270 ~~~thk~~~~~V~ViD~~t~k-------------vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsViD~~t 331 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGK-------------RLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYIFDAET 331 (352)
T ss_pred ccccccCCCCEEEEEECCCCe-------------EEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEEEECcC
Confidence 255555544431 122233455889999999999 777653333 4599999999
Q ss_pred CceE
Q 014302 370 TPLI 373 (427)
Q Consensus 370 ~~~~ 373 (427)
++.+
T Consensus 332 ~k~i 335 (352)
T TIGR02658 332 GKEL 335 (352)
T ss_pred CeEE
Confidence 8776
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=3e-06 Score=89.63 Aligned_cols=271 Identities=12% Similarity=0.105 Sum_probs=148.6
Q ss_pred eeeEEcCC-CCEEEEEeCCCeEEEEEccCCCCcceeecc-C------------CcCCeeEEEEccCCCceEEEec-CCeE
Q 014302 103 QGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTS-D------------SQRDVKVLEWRPNGGRSLSVGC-KGGI 167 (427)
Q Consensus 103 ~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-~------------~~~~v~~l~~sp~~~~~la~g~-~~~i 167 (427)
..++++++ +.++++-+.++.|++||.+.. ....... + .-..-..+++.+++..++++-. .+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788875 556666677889999987643 1111111 1 1123578899988744444333 3667
Q ss_pred EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT 247 (427)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~ 247 (427)
++++.. ++ . +..+.+... ....+ +|....... ....-+.++++|+
T Consensus 649 r~id~~---------~~--------------~---V~tlag~G~---~g~~~--~gg~~~~~~----~ln~P~gVa~dp~ 693 (1057)
T PLN02919 649 REIDFV---------NE--------------T---VRTLAGNGT---KGSDY--QGGKKGTSQ----VLNSPWDVCFEPV 693 (1057)
T ss_pred EEEecC---------CC--------------E---EEEEeccCc---ccCCC--CCChhhhHh----hcCCCeEEEEecC
Confidence 788765 11 0 111110000 00000 000000000 0123357899995
Q ss_pred CCEE-EEEecCCcEEEEEcCCCCccccc---------------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302 248 GDYF-FAAKFDGTFYLWETNTWTSEPWS---------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 311 (427)
Q Consensus 248 g~~l-~~~~~dg~v~iwd~~~~~~~~~~---------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~ 311 (427)
+..+ ++.+.++.|++||..++....+. ..-.....++|+|+|+.|+++...++.|+.|++....
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 5444 46677889999998765432211 0112456799999999888887777788888876532
Q ss_pred CCccccccc---c---ccccce---eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee---
Q 014302 312 PSLDAHLLP---V---DLPDIV---SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG--- 379 (427)
Q Consensus 312 ~~~~~~~~~---~---~~~~~~---~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~--- 379 (427)
..+-....+ . .+.... ....-.....++++++|..+++ +..+ ++|++||..++.+..+...|
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA---Ds~N---~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA---DSYN---HKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE---ECCC---CEEEEEECCCCeEEEEeccCCcC
Confidence 111000000 0 000000 0000114568999999986655 4444 66999999887766443222
Q ss_pred eeeC---CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 380 FIRG---PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 380 ~~~~---~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
+..+ ...-..|..+++.++ |.++.+...+++|.+|++
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~d---G~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGEN---GRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCCCcccccccCCceEEEEeCC---CCEEEEECCCCEEEEEEC
Confidence 1111 111224677888775 778888888999999986
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.83 E-value=8.3e-07 Score=80.82 Aligned_cols=127 Identities=14% Similarity=0.225 Sum_probs=99.3
Q ss_pred ccCCeEEEEEccCCCEEEEEecCC-cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302 235 GFGGLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 313 (427)
Q Consensus 235 ~~~~v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~ 313 (427)
+.++|.-..+.-+++-++.|..|| .+-|||.++++.......-+.|.++..++||++++.+ ++...++++++.+....
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-Ndr~el~vididngnv~ 436 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-cCceEEEEEEecCCCee
Confidence 345677777888888899999999 8999999999888888888999999999999998865 66668999999886432
Q ss_pred ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
+-.. ..-+-|+.++|+|+++++|-++..+-- ...|+++|+..++.+.++
T Consensus 437 ~idk------------S~~~lItdf~~~~nsr~iAYafP~gy~--tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 437 LIDK------------SEYGLITDFDWHPNSRWIAYAFPEGYY--TQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred Eecc------------cccceeEEEEEcCCceeEEEecCccee--eeeEEEEecCCCeEEEec
Confidence 2111 112368999999999999987764421 256999999998887554
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.80 E-value=8.9e-07 Score=81.30 Aligned_cols=222 Identities=15% Similarity=0.194 Sum_probs=133.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC----------------
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------------- 164 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---------------- 164 (427)
.+..++|||.|.+|++.... .|.+|.-.... ......|. .|..+.|||.+ .+|.+=.+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~---~l~~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA-GVECWGGPSKA---KLVRFRHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred chhheeecCcchheehhhcc-ceEEccccchh---heeeeecC-CceecccCccc-ceeeeeccCCccChhhccCCcccc
Confidence 68889999999999987544 57788766552 33333444 69999999999 67766433
Q ss_pred CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCC--ceeeeEeCCCCCCcc--cCce---------
Q 014302 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE--QITALSWGPDGRFPG--LGTP--------- 231 (427)
Q Consensus 165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~--~~~~--------- 231 (427)
+.+.+||+. ++ ..+..+...... .-.-+.|+-+.++.+ .+..
T Consensus 108 n~~~vwd~~---------sg----------------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n 162 (561)
T COG5354 108 NNVFVWDIA---------SG----------------MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDN 162 (561)
T ss_pred CceeEEecc---------Cc----------------eeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCc
Confidence 236788876 21 112212221111 112455665555422 1111
Q ss_pred -----EEe-ccCCeEEEEEccCCC--EEE-----EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEc
Q 014302 232 -----IRR-GFGGLSILKWSPTGD--YFF-----AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFA 297 (427)
Q Consensus 232 -----~~~-~~~~v~~~~~sp~g~--~l~-----~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~ 297 (427)
+.. ...++...+|+|.++ .|+ ....++.+++|.+......... -....-..+.|.+.|.+|++-..
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 111 125788899999743 344 3566888999999855543222 22334457889999999876432
Q ss_pred CC----------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 298 GS----------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 298 ~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
.. ..++++.+.... .+++ ....++|.+++|.|+++.+++++. -.+ .++.++|+
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~-------i~V~------~~~~~pVhdf~W~p~S~~F~vi~g-~~p---a~~s~~~l 305 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERS-------IPVE------KDLKDPVHDFTWEPLSSRFAVISG-YMP---ASVSVFDL 305 (561)
T ss_pred EeeecccceeccceEEEEeecccc-------ccee------ccccccceeeeecccCCceeEEec-ccc---cceeeccc
Confidence 21 133343333221 1111 122458999999999999999653 333 56889999
Q ss_pred ccC
Q 014302 368 RRT 370 (427)
Q Consensus 368 ~~~ 370 (427)
+.+
T Consensus 306 r~N 308 (561)
T COG5354 306 RGN 308 (561)
T ss_pred ccc
Confidence 876
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.80 E-value=4.7e-06 Score=76.72 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=148.2
Q ss_pred ceeeeEEcCCCCEEEEEeCC---------------CeEEEEEccCCCCcceeeccCCcCC--ee-EEEEccCCCceEEEe
Q 014302 101 DLQGVSWHQHKHIVAFISGS---------------TQVIVRDYEDSGKDACILTSDSQRD--VK-VLEWRPNGGRSLSVG 162 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d---------------~~v~vwd~~~~~~~~~~~~~~~~~~--v~-~l~~sp~~~~~la~g 162 (427)
.|.-+.|||.+++|.+-+.. ..+.|||...+ ...........+ .+ -+.|+-+. .++|--
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDD-KYVARV 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecc-hhhhhh
Confidence 78999999999999987433 34889998877 232222222222 33 57888877 555544
Q ss_pred cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-----------------
Q 014302 163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF----------------- 225 (427)
Q Consensus 163 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~----------------- 225 (427)
....+.|+++. + +.. ......++ ...+..++|+|.|+.
T Consensus 150 v~~sl~i~e~t-~-n~~--------------------~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 150 VGSSLYIHEIT-D-NIE--------------------EHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred ccCeEEEEecC-C-ccc--------------------cCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 55678888863 1 100 00111111 334556666665432
Q ss_pred ----cccCceEEec---cCCeEEEEEccCCCEEEEE----e-------cCCcEEEEEcCCCCccccccCCCCeeEEEECC
Q 014302 226 ----PGLGTPIRRG---FGGLSILKWSPTGDYFFAA----K-------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDP 287 (427)
Q Consensus 226 ----l~~~~~~~~~---~~~v~~~~~sp~g~~l~~~----~-------~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~sp 287 (427)
+..++++..+ ...-..+.|++.|++|+.- . ....++|++++...+.......++|..++|.|
T Consensus 205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p 284 (561)
T COG5354 205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP 284 (561)
T ss_pred EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecc
Confidence 1111222221 1223357799999987621 1 11357888887554433336689999999999
Q ss_pred CCCEEEEEEc-CCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 288 EGRMILLAFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 288 dg~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
.++.+++..+ ....+...++... + ....-.+.=+.+.|||.++++++ ++-+...|.|-+||
T Consensus 285 ~S~~F~vi~g~~pa~~s~~~lr~N---l------------~~~~Pe~~rNT~~fsp~~r~il~---agF~nl~gni~i~~ 346 (561)
T COG5354 285 LSSRFAVISGYMPASVSVFDLRGN---L------------RFYFPEQKRNTIFFSPHERYILF---AGFDNLQGNIEIFD 346 (561)
T ss_pred cCCceeEEecccccceeecccccc---e------------EEecCCcccccccccCcccEEEE---ecCCccccceEEec
Confidence 9988876542 2222333222221 0 00001113366789999999988 44444457799999
Q ss_pred eccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee------CceEEEEecccc
Q 014302 367 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS------SGFCCTYPLIFR 422 (427)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~------~g~i~~~~~~~~ 422 (427)
....-... |-+.++. ..-+.|.|+ ++.+.+.+. |-.|.+|+++=+
T Consensus 347 ~~~rf~~~----~~~~~~n----~s~~~wspd---~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 347 PAGRFKVA----GAFNGLN----TSYCDWSPD---GQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cCCceEEE----EEeecCC----ceEeeccCC---ceEEEecCCCcccccCcceEEEEecCc
Confidence 87765442 1222222 224456665 444444433 456777776644
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=5.9e-08 Score=83.49 Aligned_cols=248 Identities=13% Similarity=0.094 Sum_probs=135.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-C--cceeeccCC------------cCCeeEEEEccCCC--ceEEEec
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-K--DACILTSDS------------QRDVKVLEWRPNGG--RSLSVGC 163 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-~--~~~~~~~~~------------~~~v~~l~~sp~~~--~~la~g~ 163 (427)
.|+++.|...|.+||+|...|.|.++.-+... . +......+| ...|..+.|..++. .+|.++.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 68999999999999999888999998765441 1 111112222 23578899986653 3788899
Q ss_pred CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc--CceE-EeccCCeE
Q 014302 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL--GTPI-RRGFGGLS 240 (427)
Q Consensus 164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~~~-~~~~~~v~ 240 (427)
+.+|++|.+- ..+...+.....+.....+..+ .....+.+.. ...+....+++. .... ..|.-.+.
T Consensus 108 dktiKlWKiy-eknlk~va~nnls~~~~~~~~g--~~~s~~~l~l--------prls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 108 DKTIKLWKIY-EKNLKVVAENNLSDSFHSPMGG--PLTSTKELLL--------PRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred Cceeeeeeee-cccchhhhccccccccccccCC--CcCCHHHhhc--------ccccccceEEEeccceeccccceeEee
Confidence 9999999985 2221111111000000000000 0000000000 000000011110 0111 23666788
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEcCCCCc-c--------ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E--------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 311 (427)
Q Consensus 241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~--------~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~ 311 (427)
++++..|...++++. |=.|.+|++.-... - .......-|++..|+|....++.-++..|.|.+.++....
T Consensus 177 SiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 999999988887664 78899998764332 1 1112334678889999755444334445577777766421
Q ss_pred C------CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 312 P------SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 312 ~------~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
. .++-...+++..-. ...-..|..+.|+++|+|+++- .- -+|+|||++.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff--~eivsSISD~kFs~ngryIlsR---dy----ltvkiwDvnm 310 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFF--EEIVSSISDFKFSDNGRYILSR---DY----LTVKIWDVNM 310 (460)
T ss_pred hccCchhhhhhccCcccchhH--HHHhhhhcceEEcCCCcEEEEe---cc----ceEEEEeccc
Confidence 1 11111111111000 0112378999999999999883 22 4699999865
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=1.6e-06 Score=75.93 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=133.6
Q ss_pred CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (427)
Q Consensus 98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~ 175 (427)
....+++++++++-..|.+|-.+|++.-+.+... ..........|...|..+-|+-....++.+|.|.+ ..|.....
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~-~~~hc~e~ 145 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ-FAWHCTES 145 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc-eEEEeecc
Confidence 3448999999999999999999999988776554 22344555679999999999977656666666654 45665433
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 255 (427)
++....- .-.......+....-.+.+.+..+|+.+.+-+.+-- .-..+..|.+.+++++|.|..+.|++|.
T Consensus 146 ~~~lg~Y-------~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 146 GNRLGGY-------NFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred CCcccce-------EeeccCCCCceeeEEEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 3221110 000111111112222233444677777777665421 1123566889999999999999999999
Q ss_pred cCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 256 FDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
.|..+.+||+...+..... .|...|..++..+--+.|+++ +.++.|-.|+...
T Consensus 217 ~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~-~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC-GEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec-cCCCeEEEEeccc
Confidence 9999999999776654433 788888888877766777654 5555777776553
No 266
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=2e-05 Score=69.80 Aligned_cols=220 Identities=19% Similarity=0.342 Sum_probs=126.3
Q ss_pred eeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEc-cCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302 104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (427)
Q Consensus 104 ~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~la~g~~~~i~iw~~~~~~~~~~~ 181 (427)
++.|.+ ++.++.+--..+.|..|+.... ........ . ...+++. +++ .++++. .+.+.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~--~-~~G~~~~~~~g-~l~v~~-~~~~~~~d~~-------- 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--EVEVIDLP--G-PNGMAFDRPDG-RLYVAD-SGGIAVVDPD-------- 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEESS--S-EEEEEEECTTS-EEEEEE-TTCEEEEETT--------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC--eEEEEecC--C-CceEEEEccCC-EEEEEE-cCceEEEecC--------
Confidence 578998 6667777667899988887766 22222211 1 6677777 665 555554 4556666765
Q ss_pred ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC----
Q 014302 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---- 257 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---- 257 (427)
++ .+..+. -.+.+. ........+++.|+|+..++....
T Consensus 69 -~g--------------~~~~~~--------------~~~~~~---------~~~~~~ND~~vd~~G~ly~t~~~~~~~~ 110 (246)
T PF08450_consen 69 -TG--------------KVTVLA--------------DLPDGG---------VPFNRPNDVAVDPDGNLYVTDSGGGGAS 110 (246)
T ss_dssp -TT--------------EEEEEE--------------EEETTC---------SCTEEEEEEEE-TTS-EEEEEECCBCTT
T ss_pred -CC--------------cEEEEe--------------eccCCC---------cccCCCceEEEcCCCCEEEEecCCCccc
Confidence 11 111111 101000 012246678888888866654433
Q ss_pred ----CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302 258 ----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 333 (427)
Q Consensus 258 ----g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (427)
|.|..++.. ++.......-.....++|+|+++.|+++.+....|+.+++......+.......++.. ..+
T Consensus 111 ~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~g 184 (246)
T PF08450_consen 111 GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----GPG 184 (246)
T ss_dssp CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----SSC
T ss_pred cccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----CCc
Confidence 456666666 4443334445667899999999999888777778888888754321211110011110 112
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 396 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 396 (427)
..-.++++.+|+..++.+.+ +.|.+++.. ++++. .+.-+.. .+.+++|.
T Consensus 185 ~pDG~~vD~~G~l~va~~~~------~~I~~~~p~-G~~~~-----~i~~p~~--~~t~~~fg 233 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGG------GRIVVFDPD-GKLLR-----EIELPVP--RPTNCAFG 233 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETT------TEEEEEETT-SCEEE-----EEE-SSS--SEEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCC------CEEEEECCC-ccEEE-----EEcCCCC--CEEEEEEE
Confidence 47889999999877765422 459999987 66552 3333322 47788894
No 267
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=1.7e-05 Score=68.25 Aligned_cols=216 Identities=15% Similarity=0.261 Sum_probs=119.9
Q ss_pred eEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS 180 (427)
Q Consensus 105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~ 180 (427)
++.+.+|++||+- .|..|.|......-.. .........-.=+-++||||+ .+||.+.. |+|+++|+. ..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~-g~---- 75 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLM-GS---- 75 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecc-cc----
Confidence 5678999999887 5778888655444111 111111222345789999999 77777755 999999986 11
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc---C---CCEEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP---T---GDYFFAA 254 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp---~---g~~l~~~ 254 (427)
....+. .. . .+. |. ....|..|.|-+ + ...|++-
T Consensus 76 ------------------~lf~I~---p~-~------~~~--~d----------~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 76 ------------------ELFVIP---PA-M------SFP--GD----------LSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred ------------------eeEEcC---cc-c------ccC--Cc----------cccceeeeEeeccccccccceeEEEE
Confidence 111110 00 0 000 00 011222222211 1 1235555
Q ss_pred ecCCcEEEEEcCCCCcc------ccc---cCCCCeeEEEECCCCCEEEEEEcCCc----------eeeeeeeCCCCCCcc
Q 014302 255 KFDGTFYLWETNTWTSE------PWS---STSGFVTGATWDPEGRMILLAFAGSL----------TLGSIHFASKPPSLD 315 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~~------~~~---~~~~~v~~v~~spdg~~l~~~~~~~~----------~i~~~~~~~~~~~~~ 315 (427)
..+|.++-|-+..+... .+. .....|.+++|+|.-+.|++++.... -+..|++-+..+-++
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 66777777766433211 111 34678999999999888888775442 345566555322111
Q ss_pred ------cccc--c-----cccccceee----ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 316 ------AHLL--P-----VDLPDIVSL----TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 316 ------~~~~--~-----~~~~~~~~~----~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
.... + ..+.....+ .....|..|..||||+.||++... |.|.+|++.+..+.
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s------G~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS------GSLSLWEIPSLRLQ 264 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC------CeEEEEecCcchhh
Confidence 1100 0 011111111 123479999999999999997544 56999999876554
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=8e-07 Score=84.79 Aligned_cols=219 Identities=16% Similarity=0.247 Sum_probs=134.5
Q ss_pred CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
+.|.+| .|..+.|+.+.+.|-+...+|.|.||-+-.+.+-...+.......|.+++|+.||.++..+=.||.|.+=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 345666 899999999999999999999999999988755444555556678999999999966555445566655444
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc----cCc------------------
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG----LGT------------------ 230 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~----~~~------------------ 230 (427)
+ || ++. -..++ ......+.|++|.+.+. .|.
T Consensus 145 d--GN---------------------RIw-gKeLk---g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c 197 (1189)
T KOG2041|consen 145 D--GN---------------------RIW-GKELK---GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC 197 (1189)
T ss_pred c--cc---------------------eec-chhcc---hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce
Confidence 3 11 000 00011 12233667777665411 010
Q ss_pred ------eEEeccCCeEEEEE--------ccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE
Q 014302 231 ------PIRRGFGGLSILKW--------SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF 296 (427)
Q Consensus 231 ------~~~~~~~~v~~~~~--------sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~ 296 (427)
.+......+..+.| -||-..|+++-..|.+.|..-.+..........-.+..+.|+++|..|++++
T Consensus 198 ~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 198 EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence 01111112334444 2577899999999999887655554444445557889999999999999876
Q ss_pred cCCc-----eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302 297 AGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 350 (427)
Q Consensus 297 ~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~ 350 (427)
.+.- ....+++++.-...-+ .....+..|++++|-..|-.+|.+
T Consensus 278 ~~~da~~~~d~n~v~Fysp~G~i~g----------tlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYSPYGHIVG----------TLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CcccccCccccceEEEeccchhheE----------EEecCCceeeeeEEcCCceEEEEE
Confidence 5431 1123334332111111 111123368888888777777663
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.68 E-value=5.8e-07 Score=76.95 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=102.6
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS 180 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~ 180 (427)
..++.|++-+..++++-.+|.+.+-+.....-+.......|+-.++-.+|+-....++.+|+| +.+..||+..|++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence 457889999999999988999885443333222333456799999999999888788888877 8888999972221
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEEecCCc
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT 259 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~ 259 (427)
..|+ ..+.|..+|.++.-+| .+.+|++|+.|-.
T Consensus 201 ------------------------------------~i~~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 201 ------------------------------------FIWH----------NSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ------------------------------------eeee----------cceeeecceEEEecCCCCCceEEEeccccc
Confidence 0010 1234667888887764 5678999999999
Q ss_pred EEEEEcCCCCcccc-ccCCCCeeEEEECCCCC
Q 014302 260 FYLWETNTWTSEPW-SSTSGFVTGATWDPEGR 290 (427)
Q Consensus 260 v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~ 290 (427)
|++||.|+.....+ ....+.|..++++|.-.
T Consensus 235 i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred eeeeehhcccCccccCccccceEEEEecchhh
Confidence 99999997655333 35668999999999644
No 270
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.8e-06 Score=80.45 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=111.3
Q ss_pred cCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccC-CCceeee
Q 014302 140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITAL 217 (427)
Q Consensus 140 ~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 217 (427)
..+....+.|..+|||++++|+|.. -.|++||+.. -.++ +.-|. ...|.-.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-----------------------LSLK----FERhlDae~V~fe 100 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-----------------------LSLK----FERHLDAEVVDFE 100 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEccc-----------------------ceee----eeecccccceeEE
Confidence 3577788999999999999999987 8899999971 0101 11111 1112211
Q ss_pred EeCCCCCC---cccCceEEec-----------cCCeEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCee
Q 014302 218 SWGPDGRF---PGLGTPIRRG-----------FGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT 281 (427)
Q Consensus 218 ~~spdg~~---l~~~~~~~~~-----------~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~ 281 (427)
-.+-|-.. |..-..+.-| ...-..++++ |... |+.++....|+-+++..+.- ..+....+.+.
T Consensus 101 iLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN 179 (703)
T KOG2321|consen 101 ILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELN 179 (703)
T ss_pred EeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccce
Confidence 11111110 0000011111 1123345554 3333 44444466788888888776 44556668899
Q ss_pred EEEECCCCCEEEEEEcCCceeeeeeeCCCCC-----CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC
Q 014302 282 GATWDPEGRMILLAFAGSLTLGSIHFASKPP-----SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 356 (427)
Q Consensus 282 ~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d 356 (427)
++..++....|++|+.++ .+.+|+... .+..... +...........|+++.|+-+|-.+++ |...
T Consensus 180 ~v~in~~hgLla~Gt~~g----~VEfwDpR~ksrv~~l~~~~~---v~s~pg~~~~~svTal~F~d~gL~~aV---Gts~ 249 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDG----VVEFWDPRDKSRVGTLDAASS---VNSHPGGDAAPSVTALKFRDDGLHVAV---GTST 249 (703)
T ss_pred eeeecCccceEEecccCc----eEEEecchhhhhheeeecccc---cCCCccccccCcceEEEecCCceeEEe---eccC
Confidence 999999988888776555 555555321 1111111 000001111226999999999999999 6666
Q ss_pred cceeEEEEEEeccCceE
Q 014302 357 IYKGLIAIYDARRTPLI 373 (427)
Q Consensus 357 ~~~g~i~vwd~~~~~~~ 373 (427)
|.|.|||+++...+
T Consensus 250 ---G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 250 ---GSVLIYDLRASKPL 263 (703)
T ss_pred ---CcEEEEEcccCCce
Confidence 77999999987765
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=7.8e-06 Score=86.50 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=122.6
Q ss_pred eeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeecc-C---------------CcCCeeEEEEccCCCceEEEe-c
Q 014302 102 LQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTS-D---------------SQRDVKVLEWRPNGGRSLSVG-C 163 (427)
Q Consensus 102 V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~-~---------------~~~~v~~l~~sp~~~~~la~g-~ 163 (427)
-..++++++++.|.++ ..++.|+++|+... ....+.. + .-..-..++|+|++..++++. .
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 4788899988866555 44578888887654 1111110 0 011235789999554555444 4
Q ss_pred CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cCc-eEEeccCCeEE
Q 014302 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LGT-PIRRGFGGLSI 241 (427)
Q Consensus 164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~-~~~~~~~~v~~ 241 (427)
++.|.+|+.. .+ . +. .+..+|.... .+. ...........
T Consensus 704 ~~~I~v~d~~---------~g--------------~---v~-------------~~~G~G~~~~~~g~~~~~~~~~~P~G 744 (1057)
T PLN02919 704 QHQIWEYNIS---------DG--------------V---TR-------------VFSGDGYERNLNGSSGTSTSFAQPSG 744 (1057)
T ss_pred CCeEEEEECC---------CC--------------e---EE-------------EEecCCccccCCCCccccccccCccE
Confidence 5888899875 11 0 00 0111111000 000 00011234567
Q ss_pred EEEccCCCEEE-EEecCCcEEEEEcCCCCccccc--------------c--------CCCCeeEEEECCCCCEEEEEEcC
Q 014302 242 LKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS--------------S--------TSGFVTGATWDPEGRMILLAFAG 298 (427)
Q Consensus 242 ~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~--------------~--------~~~~v~~v~~spdg~~l~~~~~~ 298 (427)
++++|+|++|+ +.+.++.|++||+.++...... . .-.....++++++|..++ +...
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV-ADs~ 823 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV-ADSY 823 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE-EECC
Confidence 99999999666 5566789999998865421110 0 011345889999998544 5556
Q ss_pred CceeeeeeeCCCCC-Cccccccccccccce-eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 299 SLTLGSIHFASKPP-SLDAHLLPVDLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 299 ~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
+..|.+|+...... .+.+..... ..... ....-.....|+++++|+.+++ +..+ ++|++||+.++..
T Consensus 824 N~rIrviD~~tg~v~tiaG~G~~G-~~dG~~~~a~l~~P~GIavd~dG~lyVa---Dt~N---n~Irvid~~~~~~ 892 (1057)
T PLN02919 824 NHKIKKLDPATKRVTTLAGTGKAG-FKDGKALKAQLSEPAGLALGENGRLFVA---DTNN---SLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCeEEEEeccCCcC-CCCCcccccccCCceEEEEeCCCCEEEE---ECCC---CEEEEEECCCCcc
Confidence 66888887755321 111100000 00000 0001125688999999986665 5544 6799999988765
No 272
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.3e-06 Score=78.55 Aligned_cols=162 Identities=17% Similarity=0.254 Sum_probs=96.8
Q ss_pred eEEEEEccCCCEEE-EEecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee--eeeeeCCCCCC
Q 014302 239 LSILKWSPTGDYFF-AAKFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL--GSIHFASKPPS 313 (427)
Q Consensus 239 v~~~~~sp~g~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i--~~~~~~~~~~~ 313 (427)
....+|+|||++|+ +...||. |+++|+.+.....+....+.-....|+|||++++++++..+.- ++++.......
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 33567999999888 6677776 5566777666544444444455889999999999998777644 33333332110
Q ss_pred ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee-eeeCCCCCCCcee
Q 014302 314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDNPKPVA 392 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~ 392 (427)
.......+. ....|||||++|+........ -.|.+.|+.++.-....-.+ ..+.+....+-..
T Consensus 320 ------------riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~---~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~ 383 (425)
T COG0823 320 ------------RLTFSGGGN-SNPVWSPDGDKIVFESSSGGQ---WDIDKNDLASGGKIRILTSTYLNESPSWAPNGRM 383 (425)
T ss_pred ------------EeeccCCCC-cCccCCCCCCEEEEEeccCCc---eeeEEeccCCCCcEEEccccccCCCCCcCCCCce
Confidence 000111111 266799999999996421111 22777777766633332222 2223444444445
Q ss_pred EEeccCCCCCceeEEEeeCceEEE
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCT 416 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~ 416 (427)
+-|......+..|...-.+|+...
T Consensus 384 i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 384 IMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred EEEeccCCCCceEEEeeccceeEE
Confidence 556655555667777778888876
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=5.9e-06 Score=70.07 Aligned_cols=197 Identities=11% Similarity=0.012 Sum_probs=121.2
Q ss_pred EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA 191 (427)
Q Consensus 113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~ 191 (427)
.+..++.|.++++.+++........ +-..-.+.+++.++|+ +++++-+| ..|..|.++.+++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~se-------------- 192 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESE-------------- 192 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee--eccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccc--------------
Confidence 4667788999999888876222211 1111338899999999 55555545 8899998872111
Q ss_pred ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc
Q 014302 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 271 (427)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 271 (427)
+.... ........-.+.+|+.....+|++..||++.|||++.....
T Consensus 193 ---------y~~~~-------------------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 193 ---------YIENI-------------------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred ---------eeeee-------------------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 11110 11112345567889999999999999999999999986541
Q ss_pred ------ccccCCCCeeEEEECCCCCE-EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCC
Q 014302 272 ------PWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG 344 (427)
Q Consensus 272 ------~~~~~~~~v~~v~~spdg~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g 344 (427)
....|.+.+..+.|++-|.. |++-++.-+.+.++++.+.. .+...+..++.........|..-.|+.++
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~----~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV----NHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc----eeeEEecCccccccccccccccccccCCC
Confidence 22378999999999986642 33334555566677766642 22222222222222233457777888777
Q ss_pred CEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 345 ERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 345 ~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
..+-+ .+++ .+.=|++.+..
T Consensus 315 ~s~~v---~~e~----~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDV---KNEL----QGAEYNILSRS 334 (344)
T ss_pred ccccc---ccch----hhheeeccccc
Confidence 77655 3332 15556655443
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=1.2e-06 Score=76.74 Aligned_cols=184 Identities=12% Similarity=0.231 Sum_probs=109.2
Q ss_pred ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCCCcc----------------------------------eeeccCCcC
Q 014302 101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDA----------------------------------CILTSDSQR 144 (427)
Q Consensus 101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~~~~----------------------------------~~~~~~~~~ 144 (427)
.|+.+.|.++++ .++..+.|.+|++|.+....... ......|.-
T Consensus 86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty 165 (433)
T KOG1354|consen 86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY 165 (433)
T ss_pred hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee
Confidence 688999999886 55666789999999986542111 111235777
Q ss_pred CeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc---cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS---VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (427)
Q Consensus 145 ~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (427)
-|.+++++.|. ..+.++.+=.|.+|.++......+ +++..+.. ....|++..|+|
T Consensus 166 hiNSIS~NsD~-Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEe---------------------LteVITsaEFhp 223 (433)
T KOG1354|consen 166 HINSISVNSDK-ETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEE---------------------LTEVITSAEFHP 223 (433)
T ss_pred EeeeeeecCcc-ceEeeccceeeeeccccccCCceeEEEccccCHHH---------------------HHHHHhhhccCH
Confidence 89999999998 677778887799999875432111 11110000 011222333333
Q ss_pred C-----------CCC-cc----------cCc-------e-----EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCC
Q 014302 222 D-----------GRF-PG----------LGT-------P-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 267 (427)
Q Consensus 222 d-----------g~~-l~----------~~~-------~-----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~ 267 (427)
. |.+ +. ..+ + +..--..|..+.|+++|+++++-. --+|++||+..
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm 302 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM 302 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc
Confidence 1 111 00 000 0 111224688899999999999754 47899999854
Q ss_pred CCc--cccccC------------C---CCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302 268 WTS--EPWSST------------S---GFVTGATWDPEGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 268 ~~~--~~~~~~------------~---~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~ 308 (427)
... ..+..| . ..-..++|+-++.++++|+-.+ ..+++.+.
T Consensus 303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n-~frvf~~~ 359 (433)
T KOG1354|consen 303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN-VFRVFNLA 359 (433)
T ss_pred cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc-eEEEecCC
Confidence 332 222211 1 2335689999999999876555 55555533
No 275
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.2e-05 Score=71.68 Aligned_cols=241 Identities=13% Similarity=0.164 Sum_probs=146.2
Q ss_pred ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCCCcce----eeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302 101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDAC----ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~~~~~----~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~ 174 (427)
.|.+++|.-+++ .|...+.|..+....+........ .......+.|..++.. |+ .++++-+.|.+.+|.+..
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEeccC
Confidence 677888877665 444444666666665555421111 1223345667777665 55 677777779999999871
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-E
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-A 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~ 253 (427)
+.. | ..+..-++ ...++..|.-++...+++ +
T Consensus 135 ~d~-------------------------------h-ss~l~~la----------------~g~g~~~~r~~~~~p~Iva~ 166 (412)
T KOG3881|consen 135 GDL-------------------------------H-SSKLIKLA----------------TGPGLYDVRQTDTDPYIVAT 166 (412)
T ss_pred Ccc-------------------------------c-cccceeee----------------cCCceeeeccCCCCCceEec
Confidence 100 0 11111111 124566677677666666 6
Q ss_pred EecC--CcEEEEEcCCCCccccc-----------cCCCCeeEEEECCC--CCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302 254 AKFD--GTFYLWETNTWTSEPWS-----------STSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHL 318 (427)
Q Consensus 254 ~~~d--g~v~iwd~~~~~~~~~~-----------~~~~~v~~v~~spd--g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 318 (427)
|+.. ..+.|||+...+. .|. -..-+++++.|-+. .+.+++++... .++.++....+
T Consensus 167 GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-qvR~YDt~~qR------- 237 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-QVRLYDTRHQR------- 237 (412)
T ss_pred Cchhcccceeeeeccccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce-eEEEecCcccC-------
Confidence 8888 7899999987733 222 12235678888886 67777766444 44444333221
Q ss_pred cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302 319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 398 (427)
Q Consensus 319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 398 (427)
.|+ ........+|+++...|+|+++.+ +... |.+..||++.+.+.-.. +.+. ...+..+.-||.
T Consensus 238 RPV----~~fd~~E~~is~~~l~p~gn~Iy~---gn~~---g~l~~FD~r~~kl~g~~----~kg~--tGsirsih~hp~ 301 (412)
T KOG3881|consen 238 RPV----AQFDFLENPISSTGLTPSGNFIYT---GNTK---GQLAKFDLRGGKLLGCG----LKGI--TGSIRSIHCHPT 301 (412)
T ss_pred cce----eEeccccCcceeeeecCCCcEEEE---eccc---chhheecccCceeeccc----cCCc--cCCcceEEEcCC
Confidence 111 011111237899999999999988 5544 56999999998876322 2232 222446767875
Q ss_pred CCCCceeEEEeeCceEEEEec
Q 014302 399 FKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 399 ~~~g~~l~v~~~~g~i~~~~~ 419 (427)
+.+||.|.-|-.+.+|++
T Consensus 302 ---~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 302 ---HPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ---CceEEeeccceeEEEeec
Confidence 678999989998888875
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.54 E-value=0.0002 Score=65.76 Aligned_cols=120 Identities=10% Similarity=0.127 Sum_probs=68.8
Q ss_pred EECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce---eeccCCceeEEEECCCCCEEEEEEecCC----
Q 014302 284 TWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV---SLTGSQGIEKIAWDASGERLAVSYKGGD---- 355 (427)
Q Consensus 284 ~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~v~~sp~g~~La~~~~~~~---- 355 (427)
.|++ +|+++..+.. +.++.+++........ .++...... .--..+.+.-++++|+++.|.+...+..
T Consensus 200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~---~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFL---PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred ceEcCCCcEEEEecC--CeEEEEecCCCcceec---ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 3455 7877776544 6888888765422110 011100000 0011224455999999999988432211
Q ss_pred CcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302 356 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL 419 (427)
Q Consensus 356 d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~ 419 (427)
......|.++|+++++.+...+.|. .+..++|.|+ |. +|-+.. .++.|.+++.
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~vG~--------~~~~iavS~D---gkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIELGH--------EIDSINVSQD---AKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeCCC--------ceeeEEECCC---CCeEEEEeCCCCCcEEEEEC
Confidence 0011359999999998874443321 3568888886 45 554444 6888999984
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.50 E-value=7.6e-06 Score=74.75 Aligned_cols=142 Identities=13% Similarity=0.248 Sum_probs=101.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCC-eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGST-QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|+-..+.-+++-++.|..|| .+-|+|...+ +.. ...+.-+.|.++..+|+| +.++++.+ ..+.+.|++
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--e~k-r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vidid----- 431 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--EVK-RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDID----- 431 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCc--eEE-EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEec-----
Confidence 688888888888899999998 8899998877 323 333455789999999999 55555655 666666776
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
++ ..+.+. .. ..+-|+.+.|||+++++|.+--+|
T Consensus 432 ----ng--------------nv~~id---kS-------------------------~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 432 ----NG--------------NVRLID---KS-------------------------EYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred ----CC--------------CeeEec---cc-------------------------ccceeEEEEEcCCceeEEEecCcc
Confidence 11 212221 11 134567777888888888555444
Q ss_pred ----cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc
Q 014302 259 ----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA 297 (427)
Q Consensus 259 ----~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~ 297 (427)
.|++||+..++........+.-.+.+|.|||++|.+-+.
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 589999999888666666677788999999999987654
No 278
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=3.7e-06 Score=76.93 Aligned_cols=240 Identities=13% Similarity=0.136 Sum_probs=132.3
Q ss_pred ccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302 139 TSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (427)
Q Consensus 139 ~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (427)
...|.+.|..|.|+..| .+|++|++ ..|.+||+...........| +...|...
T Consensus 138 L~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SG-------------------------H~~NvfQa 191 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESG-------------------------HCNNVFQA 191 (559)
T ss_pred ccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccc-------------------------cccchhhh
Confidence 35699999999999999 67777766 88999999732222222222 12222222
Q ss_pred EeCC------------CCCC-----cccC-----ceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc
Q 014302 218 SWGP------------DGRF-----PGLG-----TPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS 274 (427)
Q Consensus 218 ~~sp------------dg~~-----l~~~-----~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~ 274 (427)
.|-| ||+. +.++ +.+..|.+.|.-++.-|+..+-+ +++.|+.+.-+|++........
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 2222 2211 1111 12345889999999999887655 9999999999999887763222
Q ss_pred ----cCCC---CeeEEEECCCCCEE-EEEEcCCceeeeeeeCCCCC-Cccc---cccccccccceeeccCCceeEEEECC
Q 014302 275 ----STSG---FVTGATWDPEGRMI-LLAFAGSLTLGSIHFASKPP-SLDA---HLLPVDLPDIVSLTGSQGIEKIAWDA 342 (427)
Q Consensus 275 ----~~~~---~v~~v~~spdg~~l-~~~~~~~~~i~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~i~~v~~sp 342 (427)
.+.. ...+++..|-+.+. ++++.+. ..++++...... ...+ +..|-.+. ....-.|++++|+.
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~----~d~~v~ITgl~Ysh 346 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLV----EDDPVNITGLVYSH 346 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhh-hhhhhcccchhhccccchhhhcCCcccc----ccCcccceeEEecC
Confidence 2333 56788889987744 4444333 333333332110 0111 11111110 01223799999996
Q ss_pred CCCEEEEEEecCCCcceeEEEEEEeccCce---EEEee-----eeeeeCCCCCCCceeEE-eccCCCCCceeEEEeeCce
Q 014302 343 SGERLAVSYKGGDDIYKGLIAIYDARRTPL---ISLSL-----IGFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGF 413 (427)
Q Consensus 343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~-f~~~~~~g~~l~v~~~~g~ 413 (427)
++.-|.+++.+- + |++|.-..+.- ..+.| .....|.......-.+- |.|+. .-+..|...|+
T Consensus 347 ~~sElLaSYnDe-~-----IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---EyVvSGSDCGh 417 (559)
T KOG1334|consen 347 DGSELLASYNDE-D-----IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---EYVVSGSDCGH 417 (559)
T ss_pred Cccceeeeeccc-c-----eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---ceEEecCccce
Confidence 665555544443 2 88884322111 11110 01112222222223343 44443 35888999999
Q ss_pred EEEEe
Q 014302 414 CCTYP 418 (427)
Q Consensus 414 i~~~~ 418 (427)
|-||+
T Consensus 418 IFiW~ 422 (559)
T KOG1334|consen 418 IFIWD 422 (559)
T ss_pred EEEEe
Confidence 99997
No 279
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.47 E-value=2.5e-06 Score=84.77 Aligned_cols=152 Identities=13% Similarity=0.015 Sum_probs=109.2
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccc
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~ 182 (427)
.-+.++++.-++++|+.-+.|.+|++... .......+|.+.+.++.|+-||..++.++.|.++++|.++
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~d--n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~--------- 205 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHED--NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID--------- 205 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEecccc--CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecc---------
Confidence 33456777779999999999999998844 2333567899999999999999545555566999999998
Q ss_pred cCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEE
Q 014302 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i 262 (427)
++ ....+ ..-+|...++.+.|.|+ ++++++.|-+.++
T Consensus 206 s~---------------------------~~~~~--------------~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 206 SR---------------------------EVLGC--------------TGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred cc---------------------------cccCc--------------ccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 11 00001 12247788999999998 8999999999999
Q ss_pred EEcCCCCccccccC-CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 263 WETNTWTSEPWSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 263 wd~~~~~~~~~~~~-~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
|+....+...+..| ...+..++..++...++ ++.+++.++.|++..
T Consensus 243 W~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~v-T~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 243 WGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKV-TGGNDSTLKLWDLNG 289 (967)
T ss_pred EecccceehhhhhhhhcceeEEEEcCCceEEE-eeccCcchhhhhhhc
Confidence 97665555555544 45677888777555554 556666777776543
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=6.6e-05 Score=72.80 Aligned_cols=250 Identities=14% Similarity=0.182 Sum_probs=139.6
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-----------CCceEEEecC-CeEE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-----------GGRSLSVGCK-GGIC 168 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----------~~~~la~g~~-~~i~ 168 (427)
.-.++.|+|.| +||.|+.. .|.|-|.-.. +.......|+..|+.+.|.|- ...+||++.. |.|.
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 56788999988 78888644 6667554444 555666778899999999873 2235666655 8899
Q ss_pred EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG 248 (427)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g 248 (427)
+||.. .+ ..+..+..+ ..++..++|- -+.++.
T Consensus 93 l~d~~---------~~----------------s~~~~l~~~-~~~~qdl~W~----------------------~~rd~S 124 (1062)
T KOG1912|consen 93 LVDFV---------LA----------------SVINWLSHS-NDSVQDLCWV----------------------PARDDS 124 (1062)
T ss_pred EEEeh---------hh----------------hhhhhhcCC-Ccchhheeee----------------------eccCcc
Confidence 99987 11 111122222 3333333332 223455
Q ss_pred C-EEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeee-CCCCCCccccccccccc
Q 014302 249 D-YFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHF-ASKPPSLDAHLLPVDLP 324 (427)
Q Consensus 249 ~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 324 (427)
+ .|++-....++.+|+..+++.. +.........++.+.| |.+++.+-+..+ .+...++ ....+...++...+.-+
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g-~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG-FVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc-eEEEEeccCCCCCCCCceeEEEecC
Confidence 3 4455556788999999988763 2333444556688888 445555544444 4444333 22333223332222110
Q ss_pred --c---ce-----eeccCC---------ceeEEEECCCCCEEEE-EEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 325 --D---IV-----SLTGSQ---------GIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 325 --~---~~-----~~~~~~---------~i~~v~~sp~g~~La~-~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
+ .. ...... -...++|+|.-+.+.. .+ - .-+.|+|++-..++...|. +
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-p------rellv~dle~~~~l~vvpi-----e 271 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-P------RELLVFDLEYECCLAVVPI-----E 271 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-c------cceEEEcchhhceeEEEEe-----c
Confidence 0 00 000000 1234678887654433 22 2 2299999998877754432 1
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
... +.-+.+.|.++...|.++= .+|++.++-
T Consensus 272 r~~--akfv~vlP~~~rd~LfclH-~nG~ltirv 302 (1062)
T KOG1912|consen 272 RGG--AKFVDVLPDPRRDALFCLH-SNGRLTIRV 302 (1062)
T ss_pred cCC--cceeEeccCCCcceEEEEe-cCCeEEEEE
Confidence 122 2356677877655555554 999998875
No 281
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5.3e-06 Score=77.67 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCccccc
Q 014302 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (427)
Q Consensus 110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~ 189 (427)
+...|+-|...|.|.+|+...+.-........|.+.|.++.|+.+-..+..+|.+..+..|+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~---------------- 132 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK---------------- 132 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----------------
Confidence 3447888888999999988877443444446799999999999887567777778999999986
Q ss_pred ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCC
Q 014302 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 269 (427)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 269 (427)
...+.+.. ......+.+++++|||+.|++++ +.|++||+.+.+
T Consensus 133 ---------------------~~~~~~~~--------------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 133 ---------------------EKVIIRIW--------------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred ---------------------cceeeeee--------------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce
Confidence 11111111 11234577899999999999876 789999999998
Q ss_pred c-cccccCCCCeeEEEECCC-----CCEEEEEEcCCceeeeeeeCC
Q 014302 270 S-EPWSSTSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 270 ~-~~~~~~~~~v~~v~~spd-----g~~l~~~~~~~~~i~~~~~~~ 309 (427)
. ..+.+|.+.|.++.|.-+ |.+++++......+..|.+..
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8 667799999999999877 788887655444444454443
No 282
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.43 E-value=5.7e-06 Score=78.37 Aligned_cols=186 Identities=17% Similarity=0.292 Sum_probs=107.6
Q ss_pred ceeeeEEcCCCCEEEEEeC---C-CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISG---S-TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~---d-~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~ 175 (427)
.+..-+|+|+++.++..+. . ..+.+++++.+....... ..+.-...+|+|||++++.+... +...||-++..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 5667789999998776532 2 358888888874433333 23344667999999777666654 66666665511
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EE
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AA 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~ 254 (427)
+. . .. .+....+.-..-.|+|||++|+ ++
T Consensus 271 ~~---------------------~---~~--------------------------~Lt~~~gi~~~Ps~spdG~~ivf~S 300 (425)
T COG0823 271 GK---------------------N---LP--------------------------RLTNGFGINTSPSWSPDGSKIVFTS 300 (425)
T ss_pred CC---------------------c---ce--------------------------ecccCCccccCccCCCCCCEEEEEe
Confidence 11 0 00 0001111222456899999988 66
Q ss_pred ecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302 255 KFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 255 ~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
+..|. |.++|........+......-....|||||+++++....++. ..+...+... ......+...
T Consensus 301 dr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~~----------~~~~~~lt~~ 369 (425)
T COG0823 301 DRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLAS----------GGKIRILTST 369 (425)
T ss_pred CCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccCC----------CCcEEEcccc
Confidence 66666 555566655554444333333388899999999987744333 2222222100 0001122222
Q ss_pred CceeEEEECCCCCEEEEE
Q 014302 333 QGIEKIAWDASGERLAVS 350 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~ 350 (427)
......+|.++|+.+...
T Consensus 370 ~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 370 YLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ccCCCCCcCCCCceEEEe
Confidence 344567899999999874
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=0.00018 Score=62.05 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=95.9
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCCC-----CEEEEEEcCCceeeee
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEG-----RMILLAFAGSLTLGSI 305 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spdg-----~~l~~~~~~~~~i~~~ 305 (427)
.-+.++||||+..||.+...|+|+++|+......... .....|..+.|-+.- .+.+..-...+.++.+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3457999999999999999999999998754432111 233456666665432 1111122334455555
Q ss_pred eeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCccee-------EEEEEEeccCceEEE-
Q 014302 306 HFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG-------LIAIYDARRTPLISL- 375 (427)
Q Consensus 306 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g-------~i~vwd~~~~~~~~~- 375 (427)
.+... +.-.+.|.... .......|.++.++|..++|+++ |++....+ -+..|.+-+....-.
T Consensus 125 ~vs~gt~q~y~e~hsfsf------~~~yp~Gi~~~vy~p~h~LLlVg--G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSF------SSHYPHGINSAVYHPKHRLLLVG--GCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred EEEcccCCcceeeEEEEe------cccCCCceeEEEEcCCCCEEEEe--ccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 54321 11111111100 01123479999999999999885 44332211 266787744322111
Q ss_pred --------------------eeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 376 --------------------SLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 376 --------------------~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
....+... ..+......|+..|+ |.+|++.-.+|.|.+|.+.
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd---g~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD---GSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC---CCEEEEEEcCCeEEEEecC
Confidence 01111111 111223445666665 8899999999999999874
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.40 E-value=2e-06 Score=90.04 Aligned_cols=171 Identities=12% Similarity=0.203 Sum_probs=114.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.|.++.=||...+-+||+.||.|++|.+..+.. .......-...|+.+.|+.+|..+=++-+||.+.+|.+. +.-
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~--- 2284 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP--- 2284 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCe-EEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc---
Confidence 688888899999999999999999999887733 223333334789999999999767666688999999986 110
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEe----------CCCCCCcccCc---------eEEeccCCeEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW----------GPDGRFPGLGT---------PIRRGFGGLSI 241 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------spdg~~l~~~~---------~~~~~~~~v~~ 241 (427)
. ...+.| ....+.+.| ++|++-+.... +-..|.+++++
T Consensus 2285 ~----------------------~s~qch-nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2285 Y----------------------TSWQCH-NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred e----------------------eccccC-CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence 0 001111 111111111 23332211110 11558899999
Q ss_pred EEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
+++-|..+.|++|+.+|.|++||++..+.. .+.. +. ...+++.+ +..+.+++|++..-
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~-ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTG-SSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeecc-CcccceEEEEcccc
Confidence 999999999999999999999999876653 2222 33 34455554 55558889988774
No 285
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.00029 Score=62.56 Aligned_cols=225 Identities=17% Similarity=0.142 Sum_probs=122.4
Q ss_pred eeeEEcCC-CCEEEEEeCCC-eEEEEEccCCCCcceeeccCCcC--CeeEEEEccCCCceEEEec-----CCeEEEEecc
Q 014302 103 QGVSWHQH-KHIVAFISGST-QVIVRDYEDSGKDACILTSDSQR--DVKVLEWRPNGGRSLSVGC-----KGGICIWAPS 173 (427)
Q Consensus 103 ~~l~~sp~-g~~lat~~~d~-~v~vwd~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~-----~~~i~iw~~~ 173 (427)
..++.+|+ ...+|.+-.-| ...+||..++. .........+ -.-.-.|||||..++++-. .+.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 46778884 45677776655 44678887762 2222211111 1123579999965555543 3567799986
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CE-E
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DY-F 251 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~-l 251 (427)
..+..+..+..+ ......+.|.|||+.|.. -.++| .-+|+. +. |
T Consensus 86 ------------------------~~~~ri~E~~s~-GIGPHel~l~pDG~tLvV------ANGGI---~Thpd~GR~kL 131 (305)
T PF07433_consen 86 ------------------------RGYRRIGEFPSH-GIGPHELLLMPDGETLVV------ANGGI---ETHPDSGRAKL 131 (305)
T ss_pred ------------------------CCcEEEeEecCC-CcChhhEEEcCCCCEEEE------EcCCC---ccCcccCceec
Confidence 022333334333 222346667777743320 11111 112322 22 2
Q ss_pred EEEecCCcEEEEEcCCCCcc-c--c--ccCCCCeeEEEECCCCCEEEEEEcCCc-------eeeeeeeCCCCCCcccccc
Q 014302 252 FAAKFDGTFYLWETNTWTSE-P--W--SSTSGFVTGATWDPEGRMILLAFAGSL-------TLGSIHFASKPPSLDAHLL 319 (427)
Q Consensus 252 ~~~~~dg~v~iwd~~~~~~~-~--~--~~~~~~v~~v~~spdg~~l~~~~~~~~-------~i~~~~~~~~~~~~~~~~~ 319 (427)
=..+++-++...|..+++.. + + ..|...+..+++.++|..++. ....+ .+..+.-... ..
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~~-------~~ 203 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGGA-------LR 203 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCCc-------ce
Confidence 24445556666777777752 2 2 247778999999999887653 32221 1111111110 11
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
....+........+.|-+|+++++|.++|+++--+ +.+.+||..++.++...
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG-----g~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG-----GRVAVWDAATGRLLGSV 255 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC-----CEEEEEECCCCCEeecc
Confidence 11222222222344789999999999998864433 67999999999987544
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.33 E-value=1.8e-05 Score=70.95 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=101.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~ 176 (427)
.+..+..++.+++||++..+....++++..... ........-...-+++.|-.+....+.+-.. ..+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--- 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD--- 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc---
Confidence 345556789999999998888877887776632 1111111222333444454444333332222 233344433
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
. ..+.++-+|..-++.++|+||+++|+++..
T Consensus 141 ----------------------------------------------~---~~~~~~lGhvSml~dVavS~D~~~IitaDR 171 (390)
T KOG3914|consen 141 ----------------------------------------------S---GRCEPILGHVSMLLDVAVSPDDQFIITADR 171 (390)
T ss_pred ----------------------------------------------c---cCcchhhhhhhhhheeeecCCCCEEEEecC
Confidence 0 123345567778999999999999999999
Q ss_pred CCcEEEEEcCCCCc-cccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302 257 DGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 311 (427)
Q Consensus 257 dg~v~iwd~~~~~~-~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~ 311 (427)
|..||+-....... ..+. +|+..|..++.-++ +.|+++ ++|++++.|++.+.+
T Consensus 172 DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~-sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 172 DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSG-SGDKTLRLWDITSGK 226 (390)
T ss_pred CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeec-CCCCcEEEEecccCC
Confidence 99999977654433 3444 89999999999874 456655 566699999988753
No 287
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=8.2e-07 Score=86.70 Aligned_cols=186 Identities=16% Similarity=0.202 Sum_probs=123.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe--EEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--ICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~--i~iw~~~~~~~~ 178 (427)
..+|++|+-+.+.|++|+..|.|+++++.++ ........|...|+.+.=+.||..+|.++.... ..+|++..
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s---- 1176 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS---- 1176 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHHHhcccc----
Confidence 6899999999999999999999999999988 444556789999999999999977777665533 45899860
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
+ +. .+.....-.++.|+..-..-+.|+...
T Consensus 1177 ----~----------------------~~------------------------~~Hsf~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1177 ----T----------------------GG------------------------PRHSFDEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred ----c----------------------cC------------------------ccccccccceeehhhhHHHHHhccccc
Confidence 0 00 000123445677877665556677777
Q ss_pred cEEEEEcCCCCc-cccc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302 259 TFYLWETNTWTS-EPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 333 (427)
Q Consensus 259 ~v~iwd~~~~~~-~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (427)
...+||+++... .++. +....-..+.|||+...++ +++ .+|.++.......++ ... ...
T Consensus 1207 ~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-vLWDvR~~~aIh~FD---------~ft-~~~-- 1270 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-VLWDVRIPEAIHRFD---------QFT-DYG-- 1270 (1516)
T ss_pred ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc-eeeeeccHHHHhhhh---------hhe-ecc--
Confidence 899999999876 3322 3333447788999988775 333 443333332211111 111 111
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
.=.|+|+|..++. .++ |||+++-.+
T Consensus 1271 ---~G~FHP~g~eVII---NSE--------IwD~RTF~l 1295 (1516)
T KOG1832|consen 1271 ---GGGFHPSGNEVII---NSE--------IWDMRTFKL 1295 (1516)
T ss_pred ---cccccCCCceEEe---ech--------hhhhHHHHH
Confidence 1158999998877 544 899887443
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.27 E-value=1.5e-05 Score=71.36 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=73.9
Q ss_pred EEEccCCCEEEEE---ecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302 242 LKWSPTGDYFFAA---KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 318 (427)
Q Consensus 242 ~~~sp~g~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 318 (427)
+.+-.+...+..+ ++...+.+|....+.+....+|-.-+..++|+||+++++++..++ .|++.++... +..+.
T Consensus 113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~---f~Ies 188 (390)
T KOG3914|consen 113 ISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPAT---FVIES 188 (390)
T ss_pred eeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCcc---cchhh
Confidence 3343444444433 344556666666677788889999999999999999999865444 7777766653 11111
Q ss_pred cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
. .+.|..-|..++.-++ ..|++ ++.| ++|++||+.++..+
T Consensus 189 f--------clGH~eFVS~isl~~~-~~LlS---~sGD---~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 189 F--------CLGHKEFVSTISLTDN-YLLLS---GSGD---KTLRLWDITSGKLL 228 (390)
T ss_pred h--------ccccHhheeeeeeccC-ceeee---cCCC---CcEEEEecccCCcc
Confidence 1 1123336788887765 44666 5666 67999999998765
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=2.9e-06 Score=51.09 Aligned_cols=34 Identities=26% Similarity=0.725 Sum_probs=31.5
Q ss_pred eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302 231 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 264 (427)
Q Consensus 231 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 264 (427)
.++.|...|.+++|+|++.+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999997
No 290
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.26 E-value=9.2e-05 Score=65.17 Aligned_cols=243 Identities=17% Similarity=0.140 Sum_probs=137.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~ 179 (427)
.|++...-|..+-+.+.+.|.++|||--......-..+++....++++++++++. +.|.+|.+ +++.-+.+..+-|
T Consensus 26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn-- 102 (404)
T KOG1409|consen 26 DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN-- 102 (404)
T ss_pred hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh--
Confidence 5666667777778899999999999954333333445556677889999999998 78888876 7777666541111
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
.+..+ .....|...+..+-|+-...++++.+.|..
T Consensus 103 ----------------------km~~~-----------------------r~~~~h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 103 ----------------------KMTFL-----------------------KDYLAHQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred ----------------------hcchh-----------------------hhhhhhhcceeeEEecCCceeEEEeccccc
Confidence 00000 112336677888888888888888888887
Q ss_pred EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302 260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 339 (427)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 339 (427)
+.---.+++....-........++.+.-. .++.+...+.+....+......+ + .....+.+.+.+++
T Consensus 138 ~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~------i----~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYNFETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQL------I----TTFNGHTGEVTCLK 204 (404)
T ss_pred eEEEeeccCCcccceEeeccCCCCceeeE---EEEecccccceEEEEEeecCCce------E----EEEcCcccceEEEE
Confidence 75544444443110000000011111100 12222333344344333321100 0 11122334889999
Q ss_pred ECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 340 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 340 ~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
|+|..+.|.+ +..| ..|.+||+-.++-....+.|.-.. .. .+++.+. -..|-.+-.||.|.+|++
T Consensus 205 Wd~~~~~LfS---g~~d---~~vi~wdigg~~g~~~el~gh~~k----V~--~l~~~~~---t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 205 WDPGQRLLFS---GASD---HSVIMWDIGGRKGTAYELQGHNDK----VQ--ALSYAQH---TRQLISCGEDGGIVVWNM 269 (404)
T ss_pred EcCCCcEEEe---cccc---CceEEEeccCCcceeeeeccchhh----hh--hhhhhhh---heeeeeccCCCeEEEEec
Confidence 9999999977 6666 459999997766555544443221 11 1112111 223445558888888875
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.19 E-value=0.001 Score=58.91 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=85.8
Q ss_pred eEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCcccccc------CCCCeeEEEECCCCCEEEEEEcCC-------ceeee
Q 014302 239 LSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGS-------LTLGS 304 (427)
Q Consensus 239 v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~v~~spdg~~l~~~~~~~-------~~i~~ 304 (427)
...+++. +++ .|+.+.. +.+.++|..+++...+.. .......+++.|+|+..++..... +.++.
T Consensus 42 ~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5566777 565 4454443 455666988876543331 345678999999999665433221 22333
Q ss_pred eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302 305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 384 (427)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~ 384 (427)
+....+... ....-...+.++|+|+++.|.++ .+.. +.|..|++.........+.-+....
T Consensus 120 ~~~~~~~~~--------------~~~~~~~pNGi~~s~dg~~lyv~--ds~~---~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (246)
T PF08450_consen 120 IDPDGKVTV--------------VADGLGFPNGIAFSPDGKTLYVA--DSFN---GRIWRFDLDADGGELSNRRVFIDFP 180 (246)
T ss_dssp EETTSEEEE--------------EEEEESSEEEEEEETTSSEEEEE--ETTT---TEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred ECCCCeEEE--------------EecCcccccceEECCcchheeec--cccc---ceeEEEeccccccceeeeeeEEEcC
Confidence 333311000 01111256899999999998875 4433 4588888864332111111122222
Q ss_pred CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302 385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 418 (427)
Q Consensus 385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~ 418 (427)
.....+-.+++.. +|.+..+.|..|+|..|+
T Consensus 181 ~~~g~pDG~~vD~---~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 181 GGPGYPDGLAVDS---DGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SSSCEEEEEEEBT---TS-EEEEEETTTEEEEEE
T ss_pred CCCcCCCcceEcC---CCCEEEEEcCCCEEEEEC
Confidence 2222244566655 478888889999999886
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.17 E-value=9.2e-05 Score=63.01 Aligned_cols=149 Identities=9% Similarity=0.091 Sum_probs=99.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~ 178 (427)
.+.++++++|++++++.+....|..|.++........+ .....+.-.+.+|+... ..+|++ .++++.|||+...+.+
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc
Confidence 47899999999999999999999999988773333222 22233445678999887 566666 4599999999721111
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC--EEEEEec
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD--YFFAAKF 256 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~ 256 (427)
.... .+.-+.|.+.+..+.|++-|. +|+..-.
T Consensus 239 m~~~----------------------------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 239 MAEI----------------------------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred hhhh----------------------------------------------cccCCCCCCceEEEEecCCCcceEEEEecC
Confidence 1100 011223678899999998664 5666666
Q ss_pred CCcEEEEEcCCCCccccc--------cCC-CCeeEEEECCCCCEEEEEE
Q 014302 257 DGTFYLWETNTWTSEPWS--------STS-GFVTGATWDPEGRMILLAF 296 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~--------~~~-~~v~~v~~spdg~~l~~~~ 296 (427)
-+.+.+.|+++....+.. .|. ..+..-+|+.++..+.+..
T Consensus 273 fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 273 FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred cceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 788999999988753222 222 3367777777777665543
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=8.4e-06 Score=71.55 Aligned_cols=125 Identities=11% Similarity=0.085 Sum_probs=87.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEcc-CCCceEEEecCCeEEEEeccCCCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN 177 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g~~~~i~iw~~~~~~~ 177 (427)
+|.++.|+-.++++..|..+|.|.+.|+... +........-|...|+++.--. +++.++|++.++.|++||..+.+.
T Consensus 254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 8999999999999999999999999999765 2223333345788899988776 555788888889999999971100
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
+ +-+..+.+| |... ...-+...+....++++++|
T Consensus 334 ------~----------------~~V~qYeGH----vN~~--------------------a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 334 ------K----------------KSVMQYEGH----VNLS--------------------AYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred ------c----------------cceeeeecc----cccc--------------------cccccccccccceEEEccCe
Confidence 0 113334443 0000 01112245677788899999
Q ss_pred CcEEEEEcCCCCcc
Q 014302 258 GTFYLWETNTWTSE 271 (427)
Q Consensus 258 g~v~iwd~~~~~~~ 271 (427)
...|||.++.+...
T Consensus 368 cytRiWsl~~ghLl 381 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLL 381 (425)
T ss_pred eEEEEEecccCcee
Confidence 99999999988763
No 294
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=8.8e-06 Score=77.11 Aligned_cols=210 Identities=15% Similarity=0.158 Sum_probs=126.1
Q ss_pred ceeeeEEcCCC--CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-----CeEEEEecc
Q 014302 101 DLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g--~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----~~i~iw~~~ 173 (427)
-+.|+++.-+. ..+++|..+|.|-+-.+............++...+++++|++-...+||+|-+ ..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 46777776544 48899999999998766555333344556788899999999987789998843 558899997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~ 253 (427)
++ + ..+-....|+. + ...+..+++|-.+.+.+.+
T Consensus 138 ---------s~---------------------l----tvPke~~~fs~-~-----------~l~gqns~cwlrd~klvla 171 (783)
T KOG1008|consen 138 ---------SL---------------------L----TVPKESPLFSS-S-----------TLDGQNSVCWLRDTKLVLA 171 (783)
T ss_pred ---------cc---------------------c----CCCcccccccc-c-----------cccCccccccccCcchhhc
Confidence 11 0 01111111111 0 1234458888888888889
Q ss_pred EecCCcEEEEEcCCCCccccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302 254 AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 332 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
|...+.+.++|++........-.+..+..+...| .+.|++. .. ++.+-+|+...+ ++.-...+.-.+. ...
T Consensus 172 Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~~-dg~iAiwD~~rn---ienpl~~i~~~~N---~~~ 243 (783)
T KOG1008|consen 172 GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS-NS-DGDIAIWDTYRN---IENPLQIILRNEN---KKP 243 (783)
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec-cc-cCceeeccchhh---hccHHHHHhhCCC---Ccc
Confidence 9999999999998443322222344566677777 6677654 33 445555552111 1111000000000 001
Q ss_pred CceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEecc
Q 014302 333 QGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 333 ~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
..+..++|+|... .|+++...+ ++|+++|+..
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS-----~tIrlydi~~ 276 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDS-----ITIRLYDICV 276 (783)
T ss_pred cceeeEEeccCCcchhhhhccCc-----ceEEEecccc
Confidence 1578999998654 455543343 6799999854
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.00012 Score=71.19 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=52.6
Q ss_pred CceeeeEEcCCC------------CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC---C-CceEEEec
Q 014302 100 VDLQGVSWHQHK------------HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN---G-GRSLSVGC 163 (427)
Q Consensus 100 ~~V~~l~~sp~g------------~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~---~-~~~la~g~ 163 (427)
..|+.+.|.|-. -+||++.-.|.|.|||+... ........|.+++.++.|-|. + ..++|..+
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 368888887632 26778888899999999877 344455667888999999863 3 23555566
Q ss_pred CCeEEEEecc
Q 014302 164 KGGICIWAPS 173 (427)
Q Consensus 164 ~~~i~iw~~~ 173 (427)
-.++.+|+.+
T Consensus 134 ss~lvLwntd 143 (1062)
T KOG1912|consen 134 SSTLVLWNTD 143 (1062)
T ss_pred CcEEEEEEcc
Confidence 6889999876
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=8.5e-05 Score=72.42 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=87.9
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCC-----CCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302 247 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 321 (427)
Q Consensus 247 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 321 (427)
+|.++++|+.||+|.|-.+-+.+.........++.+++++|| .+.+++|+..+ + .+..+. +-+...+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag--l---vL~er~--wlgnk~~- 153 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG--L---VLSERN--WLGNKDS- 153 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce--E---EEehhh--hhcCccc-
Confidence 699999999999999998888777666677889999999998 34555554332 1 122210 0000000
Q ss_pred ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCC
Q 014302 322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ 401 (427)
Q Consensus 322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 401 (427)
.......|+|.++.|. |.++|-+ ++++ |+|||+.....+...+-.. ..+.....+..+.|.+
T Consensus 154 ----v~l~~~eG~I~~i~W~--g~lIAWa---nd~G----v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~---- 215 (846)
T KOG2066|consen 154 ----VVLSEGEGPIHSIKWR--GNLIAWA---NDDG----VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQD---- 215 (846)
T ss_pred ----eeeecCccceEEEEec--CcEEEEe---cCCC----cEEEeccccceeeccCCCC-CCCCcccCCCceEecC----
Confidence 1122345689999996 6788884 3332 9999999888764432211 1122222344455554
Q ss_pred CceeEEEeeCc
Q 014302 402 GPLLSVCWSSG 412 (427)
Q Consensus 402 g~~l~v~~~~g 412 (427)
...|.+||.|.
T Consensus 216 ~~~LVIGW~d~ 226 (846)
T KOG2066|consen 216 EDRLVIGWGDS 226 (846)
T ss_pred CCeEEEecCCe
Confidence 45799999875
No 297
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.04 E-value=0.00077 Score=63.14 Aligned_cols=236 Identities=18% Similarity=0.266 Sum_probs=116.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc-C-------C---------cCCeeEEEEccCCCceEEEec
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-D-------S---------QRDVKVLEWRPNGGRSLSVGC 163 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-~-------~---------~~~v~~l~~sp~~~~~la~g~ 163 (427)
.+....|||+|++||... ++.|.+++...+ ....+.. + - -+.-..+-||||+++++....
T Consensus 44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 577889999999999985 578888776554 2222222 1 0 123367889999966555554
Q ss_pred C-CeEEEEecc---CCCC--cc-----ccccCccccccc---ccCCCCcceeEeehh--cccCCCceeeeEeCCCCC-Cc
Q 014302 164 K-GGICIWAPS---YPGN--AA-----SVRSGAASFLGA---LSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGR-FP 226 (427)
Q Consensus 164 ~-~~i~iw~~~---~~~~--~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~-~l 226 (427)
+ ..|..+.+. .+.. +. -.+.|....... ....++. ...+... .......+..+.|.++++ +.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~-~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK-TTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC-CCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc-EEEeeeccccCCCccCcccceecCCCcEEE
Confidence 4 444433322 1110 00 011121110000 0111111 0011111 011245577899999988 31
Q ss_pred c------------------cC--ce-EEe-cc---CCeEEEEEc-cCCCEEE-EEecCCcEEEE--EcCCCCccccccCC
Q 014302 227 G------------------LG--TP-IRR-GF---GGLSILKWS-PTGDYFF-AAKFDGTFYLW--ETNTWTSEPWSSTS 277 (427)
Q Consensus 227 ~------------------~~--~~-~~~-~~---~~v~~~~~s-p~g~~l~-~~~~dg~v~iw--d~~~~~~~~~~~~~ 277 (427)
. ++ .. ... .. .......|. +++..++ ....+|.-+|| +...+....+....
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 1 11 00 111 11 112244444 6666555 66678875555 44444444555566
Q ss_pred CCeeE-EEECCCCCEEEEEEcCCc----eeeeeeeC-CCCCCccccccccccccceeeccCCce-eEEEECCCCCEEEEE
Q 014302 278 GFVTG-ATWDPEGRMILLAFAGSL----TLGSIHFA-SKPPSLDAHLLPVDLPDIVSLTGSQGI-EKIAWDASGERLAVS 350 (427)
Q Consensus 278 ~~v~~-v~~spdg~~l~~~~~~~~----~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~v~~sp~g~~La~~ 350 (427)
..|.. +.|+++++.|++.+..+. .++.+++. ... ...+...... ..+.|||+|++++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~--------------~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE--------------PKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE--------------EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC--------------eEeccCCCCCceEEEECCCCCEEEEE
Confidence 66744 778999998887776532 56666665 321 1112211122 589999999999987
Q ss_pred EecC
Q 014302 351 YKGG 354 (427)
Q Consensus 351 ~~~~ 354 (427)
+.+.
T Consensus 346 ~s~~ 349 (353)
T PF00930_consen 346 YSGP 349 (353)
T ss_dssp EESS
T ss_pred EcCC
Confidence 6553
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.00 E-value=1.8e-05 Score=76.07 Aligned_cols=199 Identities=13% Similarity=0.189 Sum_probs=127.2
Q ss_pred CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEecCCeEEEEeccCCCC
Q 014302 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGN 177 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~~~i~iw~~~~~~~ 177 (427)
..+.++..+|.|+-+|.++.-|.. +-|++.....+..+.+--.-.|-.+.|+|... ..+++.+...-.+|++.++.+
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 367889999999999888776655 56777765555555554455688889998643 345555555566898862111
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEEEec
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFAAKF 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~ 256 (427)
..+. - .+.+|..+++.+.|+|... .+++++.
T Consensus 104 -----------------------~aIe-----------f--------------~lhghsraitd~n~~~q~pdVlatcsv 135 (1081)
T KOG0309|consen 104 -----------------------NAIE-----------F--------------VLHGHSRAITDINFNPQHPDVLATCSV 135 (1081)
T ss_pred -----------------------cceE-----------E--------------EEecCccceeccccCCCCCcceeeccc
Confidence 0111 0 2334677888999988776 5569999
Q ss_pred CCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC---CCccccccccccccceeecc
Q 014302 257 DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP---PSLDAHLLPVDLPDIVSLTG 331 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 331 (427)
|-.|..||+++.....+. .-......|+|+--...++. ++.+..+.+|+..... ..+++|..
T Consensus 136 dt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs------------ 202 (1081)
T KOG0309|consen 136 DTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVS------------ 202 (1081)
T ss_pred cccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccce------------
Confidence 999999999987763322 44456678999875544443 3555577888776542 23344433
Q ss_pred CCceeEEEECCC-CCEEEEEEecCCCcceeEEEEEEec
Q 014302 332 SQGIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 332 ~~~i~~v~~sp~-g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
.|+.++|..- ...+.+ .+.| |+|+.||..
T Consensus 203 --~vn~~~fnr~~~s~~~s---~~~d---~tvkfw~y~ 232 (1081)
T KOG0309|consen 203 --SVNSIDFNRFKYSEIMS---SSND---GTVKFWDYS 232 (1081)
T ss_pred --eeehHHHhhhhhhhhcc---cCCC---Cceeeeccc
Confidence 5566666532 223333 3344 779999874
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0036 Score=62.02 Aligned_cols=202 Identities=13% Similarity=0.148 Sum_probs=113.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCC-eeEEEEccCCCc-eEEEecC-C----eEEEEeccCCCCc
Q 014302 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD-VKVLEWRPNGGR-SLSVGCK-G----GICIWAPSYPGNA 178 (427)
Q Consensus 106 ~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~-~la~g~~-~----~i~iw~~~~~~~~ 178 (427)
+|++.+..+|.|+.+|.|.+ ++..- ....-...+... |..+ |.-++.. +++.|.+ . .++||+++.-.
T Consensus 30 c~~s~~~~vvigt~~G~V~~--Ln~s~-~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-- 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVI--LNSSF-QLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-- 103 (933)
T ss_pred EEcCCCceEEEeeccccEEE--ecccc-eeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC--
Confidence 47888999999999999866 44441 121222334444 4443 4444434 4555544 3 47899998210
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
++....++...+ +..+ ..+....++.+++.|.+-+.+|+|-.+|
T Consensus 104 -----------------~n~sP~c~~~~r------i~~~-------------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG 147 (933)
T KOG2114|consen 104 -----------------KNNSPQCLYEHR------IFTI-------------KNPTNPSPASSLAVSEDLKTIVCGFTNG 147 (933)
T ss_pred -----------------CCCCcceeeeee------eecc-------------CCCCCCCcceEEEEEccccEEEEEecCc
Confidence 000001110000 0000 0111234678899999989999999999
Q ss_pred cEEEEEcCCC--Cc--ccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee-ccC
Q 014302 259 TFYLWETNTW--TS--EPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGS 332 (427)
Q Consensus 259 ~v~iwd~~~~--~~--~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 332 (427)
.|..+.-.-. +. ... .....+|+.+++..+++.++++.... .+..+.+..+.+. ...+ .++
T Consensus 148 ~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~gr~p~------------~~~ld~~G 214 (933)
T KOG2114|consen 148 LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QVMLYSLSGRTPS------------LKVLDNNG 214 (933)
T ss_pred EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-eeEEEEecCCCcc------------eeeeccCC
Confidence 9999853211 11 111 25678999999999998844443333 3444444443211 1111 233
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
..+++.++++....++++ +++ .|.+|+...
T Consensus 215 ~~lnCss~~~~t~qfIca--~~e-----~l~fY~sd~ 244 (933)
T KOG2114|consen 215 ISLNCSSFSDGTYQFICA--GSE-----FLYFYDSDG 244 (933)
T ss_pred ccceeeecCCCCccEEEe--cCc-----eEEEEcCCC
Confidence 477888888655545553 554 399999864
No 300
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=1.9e-05 Score=73.46 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=108.7
Q ss_pred eeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceee
Q 014302 137 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216 (427)
Q Consensus 137 ~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 216 (427)
..+.+|+..|+.++--.+.+.++..+.|++|++|.+...+. ......
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---------------------------------~~~tsa 775 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---------------------------------EIGTSA 775 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---------------------------------ccccce
Confidence 34457888888887766665677777889999999971111 000111
Q ss_pred eEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc---cccCCCCeeEEEECC--CCCE
Q 014302 217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDP--EGRM 291 (427)
Q Consensus 217 ~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~v~~sp--dg~~ 291 (427)
..| .+..|..+|.++.|-.+.++++++ ||.|.+||.--+.... .....+.+..+.--+ +...
T Consensus 776 CQf-----------TY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~i 842 (1034)
T KOG4190|consen 776 CQF-----------TYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHI 842 (1034)
T ss_pred eee-----------EhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchh
Confidence 122 344577888889888888888754 8999999976665422 122223333333333 3444
Q ss_pred EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 292 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 292 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
++.+++...++++++..... +..+...... ....+-+.+++.-+.|++||+. -.. |+|.+.|.+++.
T Consensus 843 liAgcsaeSTVKl~DaRsce--~~~E~kVcna-----~~Pna~~R~iaVa~~GN~lAa~---LSn---Gci~~LDaR~G~ 909 (1034)
T KOG4190|consen 843 LIAGCSAESTVKLFDARSCE--WTCELKVCNA-----PGPNALTRAIAVADKGNKLAAA---LSN---GCIAILDARNGK 909 (1034)
T ss_pred eeeeccchhhheeeeccccc--ceeeEEeccC-----CCCchheeEEEeccCcchhhHH---hcC---CcEEEEecCCCc
Confidence 55555666677766655431 1111110000 0011257899999999999984 222 779999999988
Q ss_pred eEE
Q 014302 372 LIS 374 (427)
Q Consensus 372 ~~~ 374 (427)
++.
T Consensus 910 vIN 912 (1034)
T KOG4190|consen 910 VIN 912 (1034)
T ss_pred eec
Confidence 664
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.001 Score=60.04 Aligned_cols=71 Identities=10% Similarity=0.168 Sum_probs=59.2
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccC
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~ 174 (427)
.|+.++|||..+ +|..++.+.+|+|.|+.+. .....+..+ ..+++++|.-|..+++.+|.. |.|.|||+..
T Consensus 195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred hhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 899999999988 7888999999999999887 333444445 789999999998888888866 8899999983
No 302
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.94 E-value=0.0069 Score=56.75 Aligned_cols=261 Identities=18% Similarity=0.251 Sum_probs=129.9
Q ss_pred cCCCCEEEEE---------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 108 HQHKHIVAFI---------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 108 sp~g~~lat~---------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
|||+++++.. +..+.+.|||+++. ....+... ...+....|||+| +.++...++.|.+++.. .+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~-~~~~~~~~~sP~g-~~~~~v~~~nly~~~~~-~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPP-PPKLQDAKWSPDG-KYIAFVRDNNLYLRDLA-TGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-E-ETTBSEEEE-SSS-TEEEEEETTEEEEESST-TSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCC-ccccccceeecCC-CeeEEEecCceEEEECC-CCCe
Confidence 6889877774 33467788888876 23222222 5678999999999 67777777888888765 1111
Q ss_pred cccccCcccccccccCCCCcceeE--ee-hhcccCCCceeeeEeCCCCCCcc----------------------------
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTL--VD-FLRSQNGEQITALSWGPDGRFPG---------------------------- 227 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~---------------------------- 227 (427)
. .++.++...+.. .. ..+......-..+-|||||+.++
T Consensus 76 ~-----------~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~ 144 (353)
T PF00930_consen 76 T-----------QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE 144 (353)
T ss_dssp E-----------ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE
T ss_pred E-----------EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccc
Confidence 1 111111100000 00 00100022235788889888732
Q ss_pred ----------------------cCce--EEe------ccCCeEEEEEccCCCEEE--EEecCC---cEEEEEcCCCCccc
Q 014302 228 ----------------------LGTP--IRR------GFGGLSILKWSPTGDYFF--AAKFDG---TFYLWETNTWTSEP 272 (427)
Q Consensus 228 ----------------------~~~~--~~~------~~~~v~~~~~sp~g~~l~--~~~~dg---~v~iwd~~~~~~~~ 272 (427)
.+.. +.. ...-+..+.|+++++.|+ ....+. .+.++|..++.+..
T Consensus 145 ~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 145 SIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp EEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred ccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 1110 110 112356788999998444 334333 26677887766532
Q ss_pred cc--cCCCCe---eEEEEC-CCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeec-cCCcee-EEEECC
Q 014302 273 WS--STSGFV---TGATWD-PEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIE-KIAWDA 342 (427)
Q Consensus 273 ~~--~~~~~v---~~v~~s-pdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~-~v~~sp 342 (427)
.. ...+.| ..+.|. +++..++..+..++ .|+.++..... ...+. +.-.|. -+.|++
T Consensus 225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~--------------~~~lT~G~~~V~~i~~~d~ 290 (353)
T PF00930_consen 225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK--------------PRQLTSGDWEVTSILGWDE 290 (353)
T ss_dssp EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE--------------EEESS-SSS-EEEEEEEEC
T ss_pred EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc--------------eeccccCceeecccceEcC
Confidence 22 223332 255554 77777776666655 44444444331 11111 222554 478899
Q ss_pred CCCEEEEEEecCCCcceeEEEEEEec-cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302 343 SGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 410 (427)
Q Consensus 343 ~g~~La~~~~~~~d~~~g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~ 410 (427)
+++.|.......+... ..|+.-++. .+....+++.. +.. ..++|.|+ |.-+..-++
T Consensus 291 ~~~~iyf~a~~~~p~~-r~lY~v~~~~~~~~~~LT~~~-----~~~---~~~~~Spd---g~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGE-RHLYRVSLDSGGEPKCLTCED-----GDH---YSASFSPD---GKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTS-BEEEEEETTETTEEEESSTTS-----STT---EEEEE-TT---SSEEEEEEE
T ss_pred CCCEEEEEecCCCCCc-eEEEEEEeCCCCCeEeccCCC-----CCc---eEEEECCC---CCEEEEEEc
Confidence 9998876533322111 345555666 44444333211 111 36778876 444444443
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.94 E-value=0.00097 Score=59.30 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=105.5
Q ss_pred CCCCCCCCceeeeEEcCCCCEEEEEeC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeE
Q 014302 93 HVHLLPEVDLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI 167 (427)
Q Consensus 93 ~~~~l~~~~V~~l~~sp~g~~lat~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i 167 (427)
..+-+.+|. .||+||++|.+.-. .|.|-|||.... ....-....|.-.--.+.|.||| ..|+++.-| |
T Consensus 48 ~gRHFyGHg----~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGG-I 120 (305)
T PF07433_consen 48 PGRHFYGHG----VFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSHGIGPHELLLMPDG-ETLVVANGG-I 120 (305)
T ss_pred CCCEEecCE----EEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCCCcChhhEEEcCCC-CEEEEEcCC-C
Confidence 334445554 48999999988733 489999999843 12333334454455668899999 455555322 2
Q ss_pred EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------------c
Q 014302 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------------L 228 (427)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------------~ 228 (427)
.-- -+.+-.+.++.+.. +++..+...++.-......-...+...+..+++.++|.... .
T Consensus 121 ~Th-pd~GR~kLNl~tM~-psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~ 198 (305)
T PF07433_consen 121 ETH-PDSGRAKLNLDTMQ-PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR 198 (305)
T ss_pred ccC-cccCceecChhhcC-CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC
Confidence 100 00000111121221 11222222222111222211223366788888888887521 1
Q ss_pred CceE----------EeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEE
Q 014302 229 GTPI----------RRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 294 (427)
Q Consensus 229 ~~~~----------~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~ 294 (427)
+..+ ....+-+-++++++++.+++ ++-..+.+.+||..++...... .-..+..++-.+++ ++++
T Consensus 199 g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~-~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 199 GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV-PLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc-ccCceeeeeecCCc-eEEe
Confidence 1111 11335688999999999887 6667888999999988864443 23345666666666 5554
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.00027 Score=67.06 Aligned_cols=68 Identities=13% Similarity=0.297 Sum_probs=55.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
.|.+++++|+.+.|+.|..||+|.+||.... .... ....-..+.++|+|+| .++++|++ |.+.+||+.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~-~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLL-AKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCC---eeee-eeecccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence 7899999999999999999999999998766 2111 1334457899999999 66666665 999999997
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.93 E-value=0.0003 Score=59.76 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=53.9
Q ss_pred CeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCC-CCEEEEEEcCCceeeeeeeCC
Q 014302 238 GLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spd-g~~l~~~~~~~~~i~~~~~~~ 309 (427)
.|.+++-+|..+.++ +|+.||.+-+||++..... .+..|+..+..+-|+|. +..|++ ++++|.++.|+-..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft-~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT-CSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE-ecCCCcEEEEcCCC
Confidence 478888888776655 8999999999999988542 33489999999999994 556665 46666777666554
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.001 Score=65.26 Aligned_cols=142 Identities=18% Similarity=0.320 Sum_probs=88.0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC----CCceEEEecCCeEEEEeccCCCCccccccC
Q 014302 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAPSYPGNAASVRSG 184 (427)
Q Consensus 109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~la~g~~~~i~iw~~~~~~~~~~~~~~ 184 (427)
-+|.++|+++.||+|.|-.+.+. +.. .......++.+++++|+ ..+.+++|+..++.++.-+-
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~--~~~-~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~w---------- 147 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTD--DEI-TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNW---------- 147 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCC--ccc-eeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhh----------
Confidence 35899999999999999776665 222 22345568999999998 22456666664466654330
Q ss_pred cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302 185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 264 (427)
+.. ...| ......++|.+++| .|.++|-++ |-.|++||
T Consensus 148 ---------------------lgn--k~~v----------------~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd 185 (846)
T KOG2066|consen 148 ---------------------LGN--KDSV----------------VLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYD 185 (846)
T ss_pred ---------------------hcC--ccce----------------eeecCccceEEEEe--cCcEEEEec-CCCcEEEe
Confidence 110 1110 12234678888988 477888776 45589999
Q ss_pred cCCCCccccc-------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302 265 TNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 265 ~~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~ 308 (427)
+.+.+..... -....-..+.|.++.+. +.|-++ ++++..+.
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d--~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD--SVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC--eEEEEEEe
Confidence 9887763332 12233457889886654 445444 45555554
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.92 E-value=2.7e-05 Score=46.74 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=30.1
Q ss_pred ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302 135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 171 (427)
Q Consensus 135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~ 171 (427)
......+|...|++++|+|++..+++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4456678999999999999985555556679999997
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.90 E-value=6.2e-05 Score=65.32 Aligned_cols=164 Identities=10% Similarity=0.207 Sum_probs=100.9
Q ss_pred ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCC-----------------C-----------------------cceee
Q 014302 101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSG-----------------K-----------------------DACIL 138 (427)
Q Consensus 101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~-----------------~-----------------------~~~~~ 138 (427)
.|..+.|-.++. .++..+.|.+|++|.+.... . .+...
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 678888876654 55566689999999875430 0 00111
Q ss_pred c-cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302 139 T-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (427)
Q Consensus 139 ~-~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (427)
+ ..|.--+.+++|+.|. ..+.++.+=.|.+|+++.+.. .+..++ ++.+
T Consensus 167 yaNaH~yhiNSiS~NsD~-et~lSaDdLrINLWnl~i~D~---------------------sFnIVD-iKP~-------- 215 (460)
T COG5170 167 YANAHPYHINSISFNSDK-ETLLSADDLRINLWNLEIIDG---------------------SFNIVD-IKPH-------- 215 (460)
T ss_pred ccccceeEeeeeeecCch-heeeeccceeeeeccccccCC---------------------ceEEEe-ccCc--------
Confidence 1 3466678899999887 667777777788999872211 111111 1111
Q ss_pred EeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCC-----cccc------------ccCCCC
Q 014302 218 SWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT-----SEPW------------SSTSGF 279 (427)
Q Consensus 218 ~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~-----~~~~------------~~~~~~ 279 (427)
.+.....-|++..|+|..-.++ .++..|.|++-|++... +..+ ......
T Consensus 216 -------------nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS 282 (460)
T COG5170 216 -------------NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS 282 (460)
T ss_pred -------------cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence 0000112466777888665444 66678999999998432 1111 133467
Q ss_pred eeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 280 VTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
|..+.|+++|+++++ .+-.++.+|++...
T Consensus 283 ISD~kFs~ngryIls--RdyltvkiwDvnm~ 311 (460)
T COG5170 283 ISDFKFSDNGRYILS--RDYLTVKIWDVNMA 311 (460)
T ss_pred hcceEEcCCCcEEEE--eccceEEEEecccc
Confidence 889999999999974 44446777776653
No 309
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.86 E-value=7.7e-05 Score=71.96 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=99.0
Q ss_pred CCCC--ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 97 LPEV--DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 97 l~~~--~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+.+| .|+.+.|+|+.. .||+++.|..+..||+..... +......-......++|+-....++|+...+.|.+||..
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 3444 899999999886 899999999999999988733 333333344567889999777789998888889999997
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC-CCEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT-GDYFF 252 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~-g~~l~ 252 (427)
.++. +...+ ++|...+..+.|..- -..+.
T Consensus 189 ~gs~------------------------pl~s~--------------------------K~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 189 KGST------------------------PLCSL--------------------------KGHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred CCCc------------------------ceEEe--------------------------cccceeeehHHHhhhhhhhhc
Confidence 3221 11112 223334445554432 23455
Q ss_pred EEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEE
Q 014302 253 AAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMI 292 (427)
Q Consensus 253 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l 292 (427)
+++.|++|+.||...... ........++...++-|-|.-.
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 778899999999875543 3344667778888888865543
No 310
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.84 E-value=0.0012 Score=57.12 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=119.8
Q ss_pred ceeeeEEcC---CCC-EEEEEeCCCeEEEEEccCCCCcceeeccC------CcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302 101 DLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (427)
Q Consensus 101 ~V~~l~~sp---~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~------~~~~v~~l~~sp~~~~~la~g~~~~i~iw 170 (427)
.+..|.|+- +|. .|+-+..+|.|.++..+.. .......+ ......++.|++-+..++++-+++.+.+-
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 566777753 444 6677778899999876554 11111111 11124578899888666555566777733
Q ss_pred eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-
Q 014302 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD- 249 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~- 249 (427)
+.. ..... +.+..+.|.-..+..+|+-...
T Consensus 149 ~~t-----------------------~~~le--------------------------~vq~wk~He~E~Wta~f~~~~pn 179 (339)
T KOG0280|consen 149 YET-----------------------EMVLE--------------------------KVQTWKVHEFEAWTAKFSDKEPN 179 (339)
T ss_pred ecc-----------------------eeeee--------------------------ecccccccceeeeeeecccCCCc
Confidence 332 00001 1223455667788888875554
Q ss_pred EEEEEecCCcEEEEEcCCCCcccc---ccCCCCeeEEEECCC-CCEEEEEEcCCceeeeeeeCCC-CCCccccccccccc
Q 014302 250 YFFAAKFDGTFYLWETNTWTSEPW---SSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASK-PPSLDAHLLPVDLP 324 (427)
Q Consensus 250 ~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~v~~spd-g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~ 324 (427)
.+++|+.|+.+.-||+|..+.-.+ ..|...|.++.=+|. +.++++|+-++ .|..|+..+. ++.++
T Consensus 180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~--------- 249 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFK--------- 249 (339)
T ss_pred eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhcccCcccc---------
Confidence 555999999999999995443222 267888888888764 56777665555 7777777653 11111
Q ss_pred cceeeccCCceeEEEECCCC--CEEEEEEecCCCcceeEEEEEEeccC
Q 014302 325 DIVSLTGSQGIEKIAWDASG--ERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 325 ~~~~~~~~~~i~~v~~sp~g--~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
...++.|+.+.++|.- +.|++|...+ .+|-+++.+
T Consensus 250 ----~~v~GGVWRi~~~p~~~~~lL~~CMh~G-------~ki~~~~~~ 286 (339)
T KOG0280|consen 250 ----AKVGGGVWRIKHHPEIFHRLLAACMHNG-------AKILDSSDK 286 (339)
T ss_pred ----CccccceEEEEecchhhhHHHHHHHhcC-------ceEEEeccc
Confidence 1223689999999854 3455543333 566666543
No 311
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=7.2e-05 Score=69.75 Aligned_cols=159 Identities=13% Similarity=0.262 Sum_probs=99.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-----ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~ 175 (427)
.|++++--.+.+-+++++.|++|++|.+...+.. ..-.+..|.++|.++.|-.+- +. .+++|+++++||-- -
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~-i~ScD~giHlWDPF-i 813 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RS-IASCDGGIHLWDPF-I 813 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ce-eeeccCcceeeccc-c
Confidence 5666665566778889999999999999775222 334556799999999999775 34 44678899999964 1
Q ss_pred CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EE
Q 014302 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AA 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~ 254 (427)
+. + ...+.|.|.. ...+.|.++. +-+...+. .+
T Consensus 814 gr------------------------~-----------Laq~~dapk~----------~a~~~ikcl~-nv~~~iliAgc 847 (1034)
T KOG4190|consen 814 GR------------------------L-----------LAQMEDAPKE----------GAGGNIKCLE-NVDRHILIAGC 847 (1034)
T ss_pred cc------------------------h-----------hHhhhcCccc----------CCCceeEecc-cCcchheeeec
Confidence 00 0 0111121100 0011122221 11333344 44
Q ss_pred ecCCcEEEEEcCCCCc--cc-c---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 255 KFDGTFYLWETNTWTS--EP-W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~--~~-~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
+...+|+++|.++.+- +. . ......+.+++..+.|+.++.+-+++ .+.+.+..+
T Consensus 848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG-ci~~LDaR~ 907 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG-CIAILDARN 907 (1034)
T ss_pred cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC-cEEEEecCC
Confidence 7789999999987653 11 1 14556788999999999998776655 555555444
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.79 E-value=0.0048 Score=63.45 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=70.1
Q ss_pred CeeEEEECCCCCEEEEEEcCCcee-eeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc
Q 014302 279 FVTGATWDPEGRMILLAFAGSLTL-GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI 357 (427)
Q Consensus 279 ~v~~v~~spdg~~l~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~ 357 (427)
.-.+++|--||+++++..-....- +.+.+|+....+.....+.. +--.+++|-|.|.++|+.....+|
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~----------~l~~~LsWkPsgs~iA~iq~~~sd- 265 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVE----------GLQHSLSWKPSGSLIAAIQCKTSD- 265 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccc----------ccccceeecCCCCeEeeeeecCCC-
Confidence 345699999999998754332222 55566665322222222111 123688999999999997766666
Q ss_pred ceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe---eCceEEEEec
Q 014302 358 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW---SSGFCCTYPL 419 (427)
Q Consensus 358 ~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~---~~g~i~~~~~ 419 (427)
+.|.+|.-+....-.. .+.-+.+......++|..+ +.+||+.. ....|++|++
T Consensus 266 --~~IvffErNGL~hg~f----~l~~p~de~~ve~L~Wns~---sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 266 --SDIVFFERNGLRHGEF----VLPFPLDEKEVEELAWNSN---SDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred --CcEEEEecCCcccccc----ccCCcccccchheeeecCC---CCceeeeecccccceEEEEEe
Confidence 5688887643221100 0001222222456778765 77999943 4445888874
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00063 Score=66.95 Aligned_cols=70 Identities=14% Similarity=0.310 Sum_probs=60.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
.+++++|||..-.||.|-.-|.+.+|..++. +.......|..+|..+.|||+| ..+.++.. +.+.+|..+
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 5788999999999999999999999987665 4555556799999999999999 67777777 999999987
No 314
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.61 E-value=0.00048 Score=73.11 Aligned_cols=165 Identities=16% Similarity=0.257 Sum_probs=110.5
Q ss_pred CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (427)
Q Consensus 142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (427)
+-..|.++.=+|....+|..+.++.+++|.... ..+|.+..-
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~------------------------------------~~~v~~~rt-- 2248 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH------------------------------------GQQVVCFRT-- 2248 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccC------------------------------------CCeEEEeec--
Confidence 456788888888887788888889999998861 111211110
Q ss_pred CCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302 222 DGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT 301 (427)
Q Consensus 222 dg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~ 301 (427)
.....++.+.|+.+|..+..+..||.+-+|.+...-...+..|......+.|-. ..+++++... .
T Consensus 2249 ------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~-d 2313 (2439)
T KOG1064|consen 2249 ------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSS-D 2313 (2439)
T ss_pred ------------cCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCC-C
Confidence 012457778899999999999999999999987333355557888888888875 5555543221 2
Q ss_pred eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 302 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 302 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
-+.+.+|+....- . .......|.+.++.+++-|.-+.|++ |+.+ |.|+|||++..++.
T Consensus 2314 ~~n~~lwDtl~~~--~------~s~v~~~H~~gaT~l~~~P~~qllis---ggr~---G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2314 NRNVCLWDTLLPP--M------NSLVHTCHDGGATVLAYAPKHQLLIS---GGRK---GEVCLFDIRQRQLR 2371 (2439)
T ss_pred CCcccchhcccCc--c------cceeeeecCCCceEEEEcCcceEEEe---cCCc---CcEEEeehHHHHHH
Confidence 2334444431100 0 00111345668999999999999988 7777 66999999877664
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.58 E-value=0.00032 Score=59.53 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=58.2
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEecCCeEEEEecc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~~~i~iw~~~ 173 (427)
.|++++-+|..+ .+++|+.||.+-|||+... ..+..+...|+..++.+-|+|... +++.++.+|.+..||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 599999999776 7778899999999999877 235556677999999999999654 56666677988888875
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00068 Score=61.98 Aligned_cols=207 Identities=8% Similarity=0.002 Sum_probs=123.5
Q ss_pred CCCCEEEEEeCCCeEEEEEccC-CCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccCCCCccccccCc
Q 014302 109 QHKHIVAFISGSTQVIVRDYED-SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGNAASVRSGA 185 (427)
Q Consensus 109 p~g~~lat~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~~~~~~~~~~~ 185 (427)
.--+++.+++.||.++.|--.. .+.+.......|...|.+++-+-++ .++.+.+ +..++++|+.
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE------------ 84 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE------------ 84 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee------------
Confidence 3456899999999999997554 2223333344588889999999998 6777754 4889999987
Q ss_pred ccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC--CEEE-EEecCCcEEE
Q 014302 186 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG--DYFF-AAKFDGTFYL 262 (427)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g--~~l~-~~~~dg~v~i 262 (427)
....+..++.. -++ +.-+.-.+|.. ..|+ +.-.++.+.+
T Consensus 85 -------------n~DminmiKL~---------------------~lP----g~a~wv~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 85 -------------NFDMINMIKLV---------------------DLP----GFAEWVTSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred -------------ccchhhhcccc---------------------cCC----CceEEecCCCCeeeeEEeecccCCCcEE
Confidence 11222212211 000 11111112211 1344 3345788999
Q ss_pred EEcCCCCcccc---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce----eeccCCce
Q 014302 263 WETNTWTSEPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV----SLTGSQGI 335 (427)
Q Consensus 263 wd~~~~~~~~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 335 (427)
+|-....+... .-|..+|..+.+++-+...++.. ..|.+-.|.....-...+.. ..+.+...+ .....+..
T Consensus 127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~qfPr~~-l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPFQFPRTN-LNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred ECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcccCcccc-ccccccccchhhcccccccCc
Confidence 99877765332 27899999999999888877543 33344444333200000000 001111111 12234578
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 374 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~ 374 (427)
.++.|+|+|..++.. +.| .+|++++.+++.+++
T Consensus 205 ts~Efsp~g~qistl---~~D---rkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 205 TSFEFSPDGAQISTL---NPD---RKVRGFVFKTGKLVQ 237 (558)
T ss_pred cceEEccccCccccc---Ccc---cEEEEEEeccchhhh
Confidence 899999999999883 466 569999999987754
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.56 E-value=0.0056 Score=59.79 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=102.2
Q ss_pred EEEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE---cCCceeeeeeeCCCC-----
Q 014302 241 ILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF---AGSLTLGSIHFASKP----- 311 (427)
Q Consensus 241 ~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~---~~~~~i~~~~~~~~~----- 311 (427)
.+-++|||+.+. +.-..+.+.+.|..+.+......-.+....+.++|+|+++++++ ..+..+..+...+..
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 344778998776 54456778888988766533333344557788999999998875 222233333221110
Q ss_pred -----------C---Ccc-cccccccccc--------ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 312 -----------P---SLD-AHLLPVDLPD--------IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 312 -----------~---~~~-~~~~~~~~~~--------~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
. .+. .+...++... ...+..+.....|.+||||++++++...+ .+|.|+|+.
T Consensus 277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS-----~tVSVIDv~ 351 (635)
T PRK02888 277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS-----PTVTVIDVR 351 (635)
T ss_pred chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC-----CcEEEEECh
Confidence 0 001 1122222222 22344666889999999999999974333 459999998
Q ss_pred cCce-E--EEeeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302 369 RTPL-I--SLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 369 ~~~~-~--~~~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~ 419 (427)
.... + .+.+...+-+ ......|+..+|.++ |...+.-..|.+|.-|++
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~---G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR---GNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCC---CCEEEeEeecceeEEEeh
Confidence 7542 1 1122222222 222345888889765 667777888888888874
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.54 E-value=0.00029 Score=66.77 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=60.7
Q ss_pred eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302 327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 406 (427)
Q Consensus 327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~ 406 (427)
+.+...+.|.+++++|+.+.|+. |+.| |.|.+||...+... .. + ..--|..++|||+ |.++.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvl---GC~D---gSiiLyD~~~~~t~-~~-----k---a~~~P~~iaWHp~---gai~~ 315 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVL---GCED---GSIILYDTTRGVTL-LA-----K---AEFIPTLIAWHPD---GAIFV 315 (545)
T ss_pred EEEecCCcceEEecCcccceEEE---EecC---CeEEEEEcCCCeee-ee-----e---ecccceEEEEcCC---CcEEE
Confidence 34455668999999999999999 8888 77999998765332 11 1 1123779999997 89999
Q ss_pred EEeeCceEEEEecccc
Q 014302 407 VCWSSGFCCTYPLIFR 422 (427)
Q Consensus 407 v~~~~g~i~~~~~~~~ 422 (427)
||...|.+++||+-..
T Consensus 316 V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 316 VGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCceEEEEEeecC
Confidence 9999999999997543
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.51 E-value=0.0025 Score=62.12 Aligned_cols=116 Identities=13% Similarity=0.154 Sum_probs=79.0
Q ss_pred ccCCCEEEEEecCCcEEEEEcCC-----CCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302 245 SPTGDYFFAAKFDGTFYLWETNT-----WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 319 (427)
Q Consensus 245 sp~g~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (427)
.++|++...+ ++.|.+.|.++ .+...+..-......+.++|||+++++++..+..+.++++......+++...
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 4578877663 67899999987 3334445667778899999999999998888888989988875433333322
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
+-+.- ......+......+|+++|....+.|-++. |..|++..
T Consensus 363 ~~~~v-vaevevGlGPLHTaFDg~G~aytslf~dsq------v~kwn~~~ 405 (635)
T PRK02888 363 PRDAV-VAEPELGLGPLHTAFDGRGNAYTTLFLDSQ------IVKWNIEA 405 (635)
T ss_pred ccceE-EEeeccCCCcceEEECCCCCEEEeEeecce------eEEEehHH
Confidence 11100 111222335567789999987777666654 99999876
No 320
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.078 Score=50.94 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred ceeeeEEcCCCCEEEEE-eCC----CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302 101 DLQGVSWHQHKHIVAFI-SGS----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~-~~d----~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~ 164 (427)
.+..+++||+|++||.+ +.. .+++++|+.++ +...-... ......+.|.+++..++.+..+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIE-NPKFSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEE-EEESEEEEECTTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccc-ccccceEEEeCCCCEEEEEEeC
Confidence 34467899999999876 222 46889998877 22221111 1112339999998777777644
No 321
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.021 Score=56.82 Aligned_cols=164 Identities=11% Similarity=0.053 Sum_probs=84.4
Q ss_pred CceeeeEEcCCCCEEEEEe------CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe-EEEEec
Q 014302 100 VDLQGVSWHQHKHIVAFIS------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-ICIWAP 172 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~------~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~-i~iw~~ 172 (427)
..+.+.++||+|+.+|... .|..-.||-...+.. ...+..+. ..+..+|+|||..+.++...+. +++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3678999999999887765 355555665543322 23333333 3788999999844443332222 222221
Q ss_pred cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF 252 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~ 252 (427)
. +..+...+. + ++.. ......+.|..+.|||||+.|+
T Consensus 427 ~----------------------~~gql~~~~-v---------------d~ge-----~~~~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 427 P----------------------ATGQLARTP-V---------------DASA-----VASRVPGPISELQLSRDGVRAA 463 (591)
T ss_pred C----------------------CCceEEEEe-c---------------cCch-----hhhccCCCcCeEEECCCCCEEE
Confidence 1 000111000 0 0000 0001234678888888888877
Q ss_pred EEecCCcEEE---EEcCCCCccc-----cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 253 AAKFDGTFYL---WETNTWTSEP-----WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 253 ~~~~dg~v~i---wd~~~~~~~~-----~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
... ++.|++ -....+.... .. .....+.++.|..+++.++.....+..++.+.+...
T Consensus 464 ~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 464 MII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred EEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence 443 466666 3322332111 11 233346889999999866443323334555555543
No 322
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.0065 Score=60.41 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=88.3
Q ss_pred CeEEEEEccCCCEEEEEe------cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 238 GLSILKWSPTGDYFFAAK------FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
.+...++||+|+.++... .|. .|++++.. +....+.. ........|+|||+.|.+........++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~- 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP- 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC-
Confidence 567888999999988433 233 45555542 22233332 23488999999999888875443222221111
Q ss_pred CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEE---EEeccCceEEEe-eeeeeeCCC
Q 014302 310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARRTPLISLS-LIGFIRGPG 385 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~v---wd~~~~~~~~~~-~~~~~~~~~ 385 (427)
... .-+..+++...... ...+.|.++.|||||++||... + +.|+| -....+. ..+. +.... +.
T Consensus 428 ~~g--ql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~------g~v~Va~Vvr~~~G~-~~l~~~~~l~--~~ 494 (591)
T PRK13616 428 ATG--QLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-G------GKVYLAVVEQTEDGQ-YALTNPREVG--PG 494 (591)
T ss_pred CCc--eEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-C------CEEEEEEEEeCCCCc-eeecccEEee--cc
Confidence 111 11111222222211 2344799999999999999964 2 34777 3434444 3221 11111 11
Q ss_pred CCCCceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302 386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 422 (427)
Q Consensus 386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~ 422 (427)
....+..++|.+. +. |.|+..++...+|.+-..
T Consensus 495 l~~~~~~l~W~~~---~~-L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 495 LGDTAVSLDWRTG---DS-LVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred cCCccccceEecC---CE-EEEEecCCCCceEEEecC
Confidence 1112356777764 44 447777776666654443
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.02 Score=52.70 Aligned_cols=259 Identities=14% Similarity=0.135 Sum_probs=147.4
Q ss_pred ceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-CCceEEEecC--CeEEEEeccCCC
Q 014302 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCK--GGICIWAPSYPG 176 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~--~~i~iw~~~~~~ 176 (427)
.|.+++.+-+|.++.+.+. |..++++|+..-.........-..+.+..+ .+|. -..++|++.. +.+.++|-..+.
T Consensus 55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~ 133 (558)
T KOG0882|consen 55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF 133 (558)
T ss_pred HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence 5778888999999999777 999999998875211111111122222221 2222 1225665543 667777654000
Q ss_pred CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 256 (427)
. . .+-....|..+|..+.+.+-+..+++...
T Consensus 134 ~------------------------q-------------------------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 134 C------------------------Q-------------------------DGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred C------------------------c-------------------------cceecccccCceEEEEeeccccceeeccc
Confidence 0 0 00012336778899999999999998888
Q ss_pred CCcEEEEEcCC-CCc----cc-----------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cc----
Q 014302 257 DGTFYLWETNT-WTS----EP-----------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SL---- 314 (427)
Q Consensus 257 dg~v~iwd~~~-~~~----~~-----------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~---- 314 (427)
.|-|.-|.... .+. .. +...+....++.|+|+|..+..-. .+..++...+..... .+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEeccchhhhhhhccc
Confidence 89999998763 111 11 114556788999999999988654 555776666655321 01
Q ss_pred -ccccc---ccccccce---------ee--ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee--
Q 014302 315 -DAHLL---PVDLPDIV---------SL--TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-- 377 (427)
Q Consensus 315 -~~~~~---~~~~~~~~---------~~--~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~-- 377 (427)
..|.. +..+.... .+ .+...-..+.|+..|++|+- ++-- -|+|.++.++.++.+.-
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly---~t~~----gikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY---GTIL----GIKVINLDTNTVVRILGKD 316 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe---ecce----eEEEEEeecCeEEEEeccc
Confidence 11111 11111100 01 12224567889999999976 3321 19999999988775431
Q ss_pred -------eeeeeCCC----------CCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302 378 -------IGFIRGPG----------DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 421 (427)
Q Consensus 378 -------~~~~~~~~----------~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~ 421 (427)
....++.. ...+|+ +.|.+ +-.+++.+|...++.+|.-.+
T Consensus 317 e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~---dpt~~c~a~kk~rfylf~ep~ 373 (558)
T KOG0882|consen 317 EAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK---DPTIVCTAFKKNRFYLFREPE 373 (558)
T ss_pred hhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC---CCeEEEeeeecceEEEEecCC
Confidence 11111110 000111 12222 356899999999999995443
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.00071 Score=59.82 Aligned_cols=126 Identities=9% Similarity=0.066 Sum_probs=86.7
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----cccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCC
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~ 309 (427)
...|.++.|...+..++.|+..|.|..+|++.... .....|...|+++..-. ++++|++ ++-+++|..|+..-
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~Lma-S~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMA-SDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEee-ccCcCceeEeeehh
Confidence 35677778888889999999999999999987632 33447889999887766 6778775 45556777777664
Q ss_pred CC-----CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeee
Q 014302 310 KP-----PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 380 (427)
Q Consensus 310 ~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~ 380 (427)
.+ ..++||.... .-.-+-..+....+++ +++| ...+||.++++.++...|..+
T Consensus 331 ~K~~~~V~qYeGHvN~~------------a~l~~~v~~eeg~I~s---~GdD---cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLS------------AYLPAHVKEEEGSIFS---VGDD---CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred hhcccceeeeecccccc------------cccccccccccceEEE---ccCe---eEEEEEecccCceeeccCCCC
Confidence 32 2455665422 1112234455666666 7777 459999999998876554433
No 325
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.057 Score=47.09 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=63.6
Q ss_pred cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc------ccccccccceeeccCCceeEEEECCCCCEEE
Q 014302 275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH------LLPVDLPDIVSLTGSQGIEKIAWDASGERLA 348 (427)
Q Consensus 275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La 348 (427)
.+.-.+..++..+||..++ ++...+ . .+..+.+-++ ...+++++.+...-...|-+++.+-+..+++
T Consensus 223 l~~lSiRHld~g~dgtvwf-gcQy~G-----~-~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWF-GCQYRG-----P-RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hhhcceeeeeeCCCCcEEE-EEEeeC-----C-CccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 3556788888888888765 332111 0 0011111111 1222333333222233678889987777887
Q ss_pred EEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 349 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 349 ~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
.++.-++ ...+||..++.++...+..-.. -++-. ..| .+|..-+|+|.+|.-.
T Consensus 296 lTSP~GN-----~~vi~da~tG~vv~~a~l~daa---------Gva~~---~~g--f~vssg~G~~~~~s~~ 348 (366)
T COG3490 296 LTSPRGN-----RAVIWDAATGAVVSEAALPDAA---------GVAAA---KGG--FAVSSGQGRIIFYSRA 348 (366)
T ss_pred EecCCCC-----eEEEEEcCCCcEEecccccccc---------cceec---cCc--eEEecCCceEEecccc
Confidence 7654443 3889999999987544321111 11111 112 5566678888887533
No 326
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.21 E-value=0.022 Score=42.42 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=39.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEeeC
Q 014302 333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCWSS 411 (427)
Q Consensus 333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~~~ 411 (427)
..|.+++-...+++.... .. |+|-+|+-...... .. ....++++++..-..+|. -|.+||++
T Consensus 43 ~~v~~L~~~~~~~F~Y~l----~N---GTVGvY~~~~RlWR---------iK-SK~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 43 DKVTSLCSLGGGRFAYAL----AN---GTVGVYDRSQRLWR---------IK-SKNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred cceEEEEEcCCCEEEEEe----cC---CEEEEEeCcceeee---------ec-cCCCeEEEEEEcCCCCCceEEEEEecC
Confidence 467787777666554332 22 67888876433222 11 222366766665444443 59999999
Q ss_pred ceEEE
Q 014302 412 GFCCT 416 (427)
Q Consensus 412 g~i~~ 416 (427)
|+|.+
T Consensus 106 Gkve~ 110 (111)
T PF14783_consen 106 GKVEV 110 (111)
T ss_pred CeEEe
Confidence 99864
No 327
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.20 E-value=0.013 Score=56.14 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=92.0
Q ss_pred CceeeeEEcCCCCEEEEEe--CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC----CCceEEEecCCeEEEEecc
Q 014302 100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 100 ~~V~~l~~sp~g~~lat~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~la~g~~~~i~iw~~~ 173 (427)
|+|..++|.-..+.+++.- .+|.++. +..... +.-..|..++|.|- ...+||+-....|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kf------Gds~vi---GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKF------GDSKVI---GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCcccc------CCccEe---eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 4788999985555666652 2333332 111111 22245899999985 3468999988999999986
Q ss_pred CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~ 253 (427)
.... ....+.+.+..+.. .+++.. -..+-|+|....|++
T Consensus 91 ~s~~------------------e~~K~l~sQtcEi~--------------------e~~pvL---pQGCVWHPk~~iL~V 129 (671)
T PF15390_consen 91 PSTT------------------ERNKLLMSQTCEIR--------------------EPFPVL---PQGCVWHPKKAILTV 129 (671)
T ss_pred cCcc------------------ccccceeeeeeecc--------------------CCcccC---CCcccccCCCceEEE
Confidence 1100 00011111111110 011111 113458888887775
Q ss_pred EecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 254 AKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 254 ~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
-.....-.+++++....... ....+.|.+.||.+||++|+++-+..-.-++|+-..+
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 54444444566655444222 2677889999999999999988766545566655444
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.16 E-value=0.012 Score=58.94 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=102.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccc
Q 014302 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASF 188 (427)
Q Consensus 110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~ 188 (427)
++..+..|+.-..+..+|+... .......-....|.-++- ++ +++.+|.. |+|.+-|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~--Nn-r~lf~G~t~G~V~LrD~~--------------- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRY--NN-RNLFCGDTRGTVFLRDPN--------------- 205 (1118)
T ss_pred CCcceeecchhhheeeeecccc--eeeeeeeccCCceEEEEe--cC-cEEEeecccceEEeecCC---------------
Confidence 3445666666666667777765 222222222223554443 44 67777766 889888876
Q ss_pred cccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec---------CCc
Q 014302 189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF---------DGT 259 (427)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---------dg~ 259 (427)
....+.. +..|.+.+..+ +-.|+.|++++. |..
T Consensus 206 ----------s~~~iht--------------------------~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 206 ----------SFETIHT--------------------------FDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred ----------cCceeee--------------------------eeccccceeee--eccCCeEEEeecccccccccccch
Confidence 1122222 33344455443 446777776654 445
Q ss_pred EEEEEcCCCCccccccCCCCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302 260 FYLWETNTWTSEPWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI 338 (427)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 338 (427)
|+|||+|..+...-......-.-+.|.|.= ..+++++..+ ....++.... ..+.. ........+..+.++
T Consensus 248 vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG-q~q~vd~~~l----sNP~~----~~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 248 VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG-QFQFVDTATL----SNPPA----GVKMVNPNGSGISAF 318 (1118)
T ss_pred hhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc-ceeecccccc----CCCcc----ceeEEccCCCcceeE
Confidence 899999988764333222223456677743 2333333332 2222221111 00000 001111223358999
Q ss_pred EECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
++|++|+.||. +..+ |.|.+|.-...+.+
T Consensus 319 DiSsn~~alaf---gd~~---g~v~~wa~~~~P~F 347 (1118)
T KOG1275|consen 319 DISSNGDALAF---GDHE---GHVNLWADRPQPQF 347 (1118)
T ss_pred EecCCCceEEE---eccc---CcEeeecCCCCCcc
Confidence 99999999999 6666 66999984444433
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0065 Score=58.95 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=75.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.|.--+++-.+++|+.|+.-|.+.+|+-..+ .......+ -.+.+..+..|++. .++|.|++ +.|.++.++....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~--~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTG--EMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCch--hhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC-
Confidence 3444566778999999999999999876655 33333332 33445666778777 78888877 6666776651000
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
.....+...+ ..|...|++++|++++..+++|...|
T Consensus 111 -------------------~~~~~~t~~d-------------------------~~~~~rVTal~Ws~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 111 -------------------RDLDYVTPCD-------------------------KSHKCRVTALEWSKNGMKLYSGDSQG 146 (726)
T ss_pred -------------------Ccceeecccc-------------------------ccCCceEEEEEecccccEEeecCCCc
Confidence 0000111011 11556677888888888888888888
Q ss_pred cEEEEEcCC
Q 014302 259 TFYLWETNT 267 (427)
Q Consensus 259 ~v~iwd~~~ 267 (427)
+|..-.+.+
T Consensus 147 kv~~~~L~s 155 (726)
T KOG3621|consen 147 KVVLTELDS 155 (726)
T ss_pred eEEEEEech
Confidence 877776655
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.10 E-value=0.17 Score=44.40 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~ 178 (427)
.+..|+|+|+.. ++|+....+.|...+.+ +.........-.+..-.|++..++ .++.+.. ++.+.+.++...+.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~- 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTT- 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE----T-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecccc-
Confidence 589999999866 55566666777655543 222222222334568889998777 4444443 47788887751100
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
.+. ...+..+.... . ..+..++-.++|+|.++.|+++-+..
T Consensus 99 --------------------------~~~---~~~~~~~~l~~---------~-~~~N~G~EGla~D~~~~~L~v~kE~~ 139 (248)
T PF06977_consen 99 --------------------------SLD---RADVQKISLGF---------P-NKGNKGFEGLAYDPKTNRLFVAKERK 139 (248)
T ss_dssp --------------------------T-----EEEEEEEE------------S----SS--EEEEEETTTTEEEEEEESS
T ss_pred --------------------------ccc---hhhceEEeccc---------c-cCCCcceEEEEEcCCCCEEEEEeCCC
Confidence 000 00011111100 0 12445788999999988888777777
Q ss_pred cEEEEEcCC--CCc-cc------cc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302 259 TFYLWETNT--WTS-EP------WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 326 (427)
Q Consensus 259 ~v~iwd~~~--~~~-~~------~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
-.+||.++. ... .. +. .....+.+++++|....|+.-+.....+..++....... . ..+...
T Consensus 140 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~---~---~~L~~g 213 (248)
T PF06977_consen 140 PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVS---S---LSLDRG 213 (248)
T ss_dssp SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEE---E---EE-STT
T ss_pred ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEE---E---EEeCCc
Confidence 777777764 111 10 11 244567899999987666666666656655553222100 0 000000
Q ss_pred e-eec-cCCceeEEEECCCCCEEEE
Q 014302 327 V-SLT-GSQGIEKIAWDASGERLAV 349 (427)
Q Consensus 327 ~-~~~-~~~~i~~v~~sp~g~~La~ 349 (427)
. .+. .-...-.|+|+++|+..++
T Consensus 214 ~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 214 FHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp GGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccCcccccCCccEEEECCCCCEEEE
Confidence 0 000 0014678999999988777
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0021 Score=63.49 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=75.1
Q ss_pred eeEEcCCCCEEEEEeC----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 104 GVSWHQHKHIVAFISG----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 104 ~l~~sp~g~~lat~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
-.+|||...++|+++. .|.|.|| .+++..+.-..+ .-.+++++|+|.. .+|+.|.. +.+.+|..+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~---P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~----- 89 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY---PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTN----- 89 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc---ceehhhhccChHH-HHHhhccccceeEEEecC-----
Confidence 3579999999999864 5888887 455522121222 2236789999997 88999977 778899876
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 258 (427)
+. +.. +....|..+|..+.||++|..|.++..-|
T Consensus 90 ----~~--------------e~h----------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g 123 (1416)
T KOG3617|consen 90 ----TT--------------ETH----------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPG 123 (1416)
T ss_pred ----Cc--------------eee----------------------------eeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence 11 000 01223566788888999999999998889
Q ss_pred cEEEEEcC
Q 014302 259 TFYLWETN 266 (427)
Q Consensus 259 ~v~iwd~~ 266 (427)
.|.+|...
T Consensus 124 ~v~lwr~d 131 (1416)
T KOG3617|consen 124 SVHLWRYD 131 (1416)
T ss_pred eeEEEEee
Confidence 99998765
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.01 E-value=0.04 Score=48.30 Aligned_cols=175 Identities=19% Similarity=0.196 Sum_probs=83.6
Q ss_pred eEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcc-ccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302 231 PIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 307 (427)
Q Consensus 231 ~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~ 307 (427)
++..-...+..++|.|+.+.|+ +....+.|..++.+ ++.. .+. ...+....+++..++.+++ +....+.+..+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl-~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVL-SEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEE-EETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEE-EEcCCCcEEEEEE
Confidence 3444445689999999877666 66777888888864 4442 222 3456788999988887766 4566678888888
Q ss_pred CCCCCCcccccc-ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc----CceEEEeeeeeee
Q 014302 308 ASKPPSLDAHLL-PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----TPLISLSLIGFIR 382 (427)
Q Consensus 308 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~----~~~~~~~~~~~~~ 382 (427)
......+..... ...+ .....+...+-.++|+|.++.|.+. .+. .-..||.++. ..+.......+..
T Consensus 94 ~~~~~~~~~~~~~~~~l--~~~~~~N~G~EGla~D~~~~~L~v~---kE~---~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISL--GFPNKGNKGFEGLAYDPKTNRLFVA---KER---KPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp ----TT--EEEEEEEE-----S---SS--EEEEEETTTTEEEEE---EES---SSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred eccccccchhhceEEec--ccccCCCcceEEEEEcCCCCEEEEE---eCC---CChhhEEEccccCccceeecccccccc
Confidence 654222211110 0000 0001122368999999987777763 222 1245555543 2222222222221
Q ss_pred CCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302 383 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 383 ~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
.......+..++|+|.. +.++...-.+..|..+
T Consensus 166 ~~~~~~d~S~l~~~p~t--~~lliLS~es~~l~~~ 198 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRT--GHLLILSDESRLLLEL 198 (248)
T ss_dssp HT--SS---EEEEETTT--TEEEEEETTTTEEEEE
T ss_pred ccceeccccceEEcCCC--CeEEEEECCCCeEEEE
Confidence 11122235678899873 4444444334344333
No 333
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.99 E-value=0.021 Score=54.72 Aligned_cols=143 Identities=21% Similarity=0.358 Sum_probs=85.1
Q ss_pred CCceeeeEeCCCCCCcc-------cCc------eEEeccCCeEEEEEccCC----CEEEEEecCCcEEEEEcCCCCc--c
Q 014302 211 GEQITALSWGPDGRFPG-------LGT------PIRRGFGGLSILKWSPTG----DYFFAAKFDGTFYLWETNTWTS--E 271 (427)
Q Consensus 211 ~~~v~~~~~spdg~~l~-------~~~------~~~~~~~~v~~~~~sp~g----~~l~~~~~dg~v~iwd~~~~~~--~ 271 (427)
-.++..++|. ||+.+. .|. ..-+....|..++|+|-+ ..|++.-..+.|.||.+..... .
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~ 97 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN 97 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence 4567788887 444311 111 122245678999999854 3455555688999998863221 1
Q ss_pred ccc-----cC--C--CCeeEEEECCCCCEEEEEEcCCc-eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC
Q 014302 272 PWS-----ST--S--GFVTGATWDPEGRMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD 341 (427)
Q Consensus 272 ~~~-----~~--~--~~v~~v~~spdg~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 341 (427)
++. .. . ---..+.|+|....|++-+..+- .+..++..+.+. ...+..++.|.+.+|.
T Consensus 98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV-------------kaDi~~~G~IhCACWT 164 (671)
T PF15390_consen 98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV-------------KADIKTSGLIHCACWT 164 (671)
T ss_pred cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE-------------EEeccCCceEEEEEec
Confidence 111 11 1 12246789999888877666552 334444433211 1123456789999999
Q ss_pred CCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 342 ASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 342 p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
+||+.|+++...+ =.-++||-....+
T Consensus 165 ~DG~RLVVAvGSs-----LHSyiWd~~qKtL 190 (671)
T PF15390_consen 165 KDGQRLVVAVGSS-----LHSYIWDSAQKTL 190 (671)
T ss_pred CcCCEEEEEeCCe-----EEEEEecCchhhh
Confidence 9999999964332 3477898654433
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.0077 Score=58.49 Aligned_cols=119 Identities=13% Similarity=0.235 Sum_probs=79.4
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 315 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~ 315 (427)
.+.--+++..+++++.|+.-|.+++|+-..++..... ...+.+...+.|++..++|+| ...+.+.+..+....+.-.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAag-t~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAG-TASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhh-cCCceEEeehhhccCCCcc
Confidence 4555667889999999999999999998777665444 355666777788877777655 4554555555544321111
Q ss_pred ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
....+. ...++..|++++|++|+..|.+ |... |+|.+-.+.+
T Consensus 114 ~~~t~~------d~~~~~rVTal~Ws~~~~k~ys---GD~~---Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPC------DKSHKCRVTALEWSKNGMKLYS---GDSQ---GKVVLTELDS 155 (726)
T ss_pred eeeccc------cccCCceEEEEEecccccEEee---cCCC---ceEEEEEech
Confidence 111111 1114558999999999999977 6665 7788777665
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0029 Score=57.17 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=66.4
Q ss_pred EEeccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 232 IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
+..+...|..++|||..+ ++..++.+.+|+|.|+++............+.+++|.-|....++++...|.++++++...
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 445667788999999998 5558999999999999988875444333899999999999999999888899999998875
Q ss_pred C
Q 014302 311 P 311 (427)
Q Consensus 311 ~ 311 (427)
.
T Consensus 269 ~ 269 (463)
T KOG1645|consen 269 E 269 (463)
T ss_pred C
Confidence 3
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.77 E-value=0.016 Score=55.46 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=71.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE-eccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw-~~~~~~~~~ 179 (427)
..+.++++|+|+.++++ .||...|+..... .. ...+......|.+.+ .+.+.-....|.|+ +.+
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~----r~---k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~------ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAW----RN---KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK------ 98 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTT----EE---EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE------
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCC----cc---cccCceeEEEEecCc-cEEEEECCCeEEEEEcCc------
Confidence 35789999999999885 5777778762211 11 123455778999865 44444445778886 332
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
. .... .++.. ..+..+ |. |..|...+ ++.
T Consensus 99 ---~-----------------~~~k--------------------------~i~~~-~~~~~I-f~--G~LL~~~~-~~~ 127 (443)
T PF04053_consen 99 ---N-----------------EVVK--------------------------SIKLP-FSVEKI-FG--GNLLGVKS-SDF 127 (443)
T ss_dssp ---E------------------TT-------------------------------S-S-EEEE-E---SSSEEEEE-TTE
T ss_pred ---c-----------------ccce--------------------------EEcCC-cccceE-Ec--CcEEEEEC-CCC
Confidence 0 0000 00000 011111 11 77777665 448
Q ss_pred EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302 260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 302 (427)
Q Consensus 260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i 302 (427)
|.+||+.+++........ .|..+.|+++|++++..+.+.-.+
T Consensus 128 i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 128 ICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp EEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEE
Confidence 999999988775555433 389999999999999887555333
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0074 Score=57.90 Aligned_cols=69 Identities=19% Similarity=0.425 Sum_probs=56.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCee-EEEEccCCCceEEEec-CCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGC-KGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~la~g~-~~~i~iw~~~ 173 (427)
.|.-+.|+|.-.+||++..+|.+.++.++. +..-...-|...++ +++|.||| ++||+|- +|+|++-|+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEcc
Confidence 678899999999999999999998877762 24333343666777 99999999 8999995 5999999998
No 338
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.74 E-value=0.0033 Score=36.35 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=28.8
Q ss_pred EEeccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302 232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 264 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 264 (427)
+..|...+.++.|++++..+++++.|+.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667899999999999999999999999996
No 339
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.68 E-value=0.18 Score=44.63 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=83.3
Q ss_pred CeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee-CCCCCCcc
Q 014302 238 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-ASKPPSLD 315 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~-~~~~~~~~ 315 (427)
.+.+.++|++++.++... .++.-.+|-...............+....|+++|...++..... ....+.. .+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~-~~~~~~~~~~g~---- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSG-GVRVVRDSASGT---- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCC-ceEEEEecCCCc----
Confidence 577888999998877433 34444444444443322222344888999999987776544333 3333321 1110
Q ss_pred ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec---cC-ceEEEeeeeeeeCCCCCCCce
Q 014302 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR---RT-PLISLSLIGFIRGPGDNPKPV 391 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~---~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
.....++... ..+.|.++.+||||..+|+......+ +.|.|=-+. .+ +.....+..... .....+.
T Consensus 100 ~~~~~v~~~~-----~~~~I~~l~vSpDG~RvA~v~~~~~~---~~v~va~V~r~~~g~~~~l~~~~~~~~--~~~~~v~ 169 (253)
T PF10647_consen 100 GEPVEVDWPG-----LRGRITALRVSPDGTRVAVVVEDGGG---GRVYVAGVVRDGDGVPRRLTGPRRVAP--PLLSDVT 169 (253)
T ss_pred ceeEEecccc-----cCCceEEEEECCCCcEEEEEEecCCC---CeEEEEEEEeCCCCCcceeccceEecc--cccCcce
Confidence 0111111111 11179999999999999997655554 557777653 23 112122222211 2223355
Q ss_pred eEEeccCCCCCceeEEEeeCc
Q 014302 392 AFSFHDKFKQGPLLSVCWSSG 412 (427)
Q Consensus 392 ~~~f~~~~~~g~~l~v~~~~g 412 (427)
.++|.+. +.|+..+-..+
T Consensus 170 ~v~W~~~---~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDD---STLVVLGRSAG 187 (253)
T ss_pred eeeecCC---CEEEEEeCCCC
Confidence 7888775 44444443333
No 340
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.63 E-value=0.0059 Score=37.96 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=27.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~ 129 (427)
.|.+++|+|...+||.++.+|.|.||.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 58999999999999999999999999884
No 341
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.52 E-value=0.22 Score=43.53 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=34.7
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+++.++.+++.++.+..||..++ +.. ........+.......++ .+++...++.+..+|..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG--~~~-W~~~~~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~ 94 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTG--KVL-WRFDLPGPISGAPVVDGG-RVYVGTSDGSLYALDAK 94 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTS--EEE-EEEECSSCGGSGEEEETT-EEEEEETTSEEEEEETT
T ss_pred EeCCEEEEEcCCCEEEEEECCCC--CEE-EEeeccccccceeeeccc-ccccccceeeeEecccC
Confidence 35667777789999999998777 221 111112222211222233 56666666777788865
No 342
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.49 E-value=0.23 Score=44.06 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=84.9
Q ss_pred ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~ 178 (427)
.+.+.+++++|+.+|... .++.-.||-...... ...... ...+...+|++++ .+.+.... ....++.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~--- 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSAS--- 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCC-CEEEEEcCCCceEEEEecCC---
Confidence 688999999999887665 233333443433321 222222 2378899999997 56555543 55555532100
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe---
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK--- 255 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~--- 255 (427)
+ ......+.|. ...+.|..+.+||||..++.-.
T Consensus 98 -----g--------------------------~~~~~~v~~~-------------~~~~~I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 98 -----G--------------------------TGEPVEVDWP-------------GLRGRITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred -----C--------------------------cceeEEeccc-------------ccCCceEEEEECCCCcEEEEEEecC
Confidence 0 0000011110 0011688888899998887333
Q ss_pred cCCcEEEEEcCCCCc---cc------cc-cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302 256 FDGTFYLWETNTWTS---EP------WS-STSGFVTGATWDPEGRMILLAFAGSLTLGS 304 (427)
Q Consensus 256 ~dg~v~iwd~~~~~~---~~------~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~ 304 (427)
.++.|.+--+..... .. .. .....+.++.|.+++..++.+...+.....
T Consensus 134 ~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 134 GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 346666655432111 11 11 335688999999999988877666654443
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.47 E-value=0.0048 Score=35.65 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=25.2
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRD 127 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd 127 (427)
.|++++|++++.++++++.|+.+++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 689999999999999999999999985
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.42 E-value=0.93 Score=43.37 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=45.8
Q ss_pred eeEEcCCCCEEEEEeCC-----------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302 104 GVSWHQHKHIVAFISGS-----------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (427)
Q Consensus 104 ~l~~sp~g~~lat~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~ 172 (427)
.++.+|.|--||....+ ..|+||+.... ....+...+ +.+.++.|+.+. .++++..+|.++++++
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~--ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK--LLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDL 108 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC--EeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeC
Confidence 34667777777766443 14778765544 333333333 789999999876 8889999999999998
Q ss_pred c
Q 014302 173 S 173 (427)
Q Consensus 173 ~ 173 (427)
.
T Consensus 109 ~ 109 (410)
T PF04841_consen 109 F 109 (410)
T ss_pred C
Confidence 5
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.37 E-value=0.0024 Score=61.18 Aligned_cols=155 Identities=12% Similarity=0.196 Sum_probs=91.7
Q ss_pred ceeeeEEcCC-CCEEEEE----eCCCeEEEEEccCC---CCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEe
Q 014302 101 DLQGVSWHQH-KHIVAFI----SGSTQVIVRDYEDS---GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA 171 (427)
Q Consensus 101 ~V~~l~~sp~-g~~lat~----~~d~~v~vwd~~~~---~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~ 171 (427)
..++++|++- .++||.| -.|..+.|||+... ..+......+......+++|-.+. +++.+|.. ..++++|
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFD 182 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhh
Confidence 6789999884 4588887 34678899999876 111222222244566788898666 55555544 6888888
Q ss_pred ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCE
Q 014302 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDY 250 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~ 250 (427)
+.- . . .....+. ...+..+..+| .+.+
T Consensus 183 lRq---------s--------------~-~~~~svn----------------------------Tk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 183 LRQ---------S--------------L-DSVSSVN----------------------------TKYVQGITVDPFSPNY 210 (783)
T ss_pred hhh---------h--------------h-hhhhhhh----------------------------hhhcccceecCCCCCc
Confidence 750 0 0 0000000 11233455566 5667
Q ss_pred EEEEecCCcEEEEE-cCCCCc-cccccC-----CCCeeEEEECCCCCEE-EEEEcCCceeeeeeeCC
Q 014302 251 FFAAKFDGTFYLWE-TNTWTS-EPWSST-----SGFVTGATWDPEGRMI-LLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 251 l~~~~~dg~v~iwd-~~~~~~-~~~~~~-----~~~v~~v~~spdg~~l-~~~~~~~~~i~~~~~~~ 309 (427)
+++.. ||.|.+|| .+..+. .....+ -..+..++|+|-..-+ ++...+.++|+.+.+..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 77665 99999999 444333 111111 2248999999965433 34445566888877665
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.35 E-value=0.03 Score=56.17 Aligned_cols=142 Identities=11% Similarity=0.164 Sum_probs=91.4
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---------CeEEEEeccCCCCc
Q 014302 108 HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------GGICIWAPSYPGNA 178 (427)
Q Consensus 108 sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---------~~i~iw~~~~~~~~ 178 (427)
..+++.|.+|...|+|.+-|..+. +.......|.+.|.++.. .|..++++|.. .-|+|||+.
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR----- 254 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR----- 254 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh-----
Confidence 346789999999999999887766 666677789999986554 56466777632 336788886
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEEecC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFD 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d 257 (427)
.++ .+. ++.-+. +-..+.|.|.= ..+++.+..
T Consensus 255 -----------------------mmr--------al~---------------PI~~~~-~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 255 -----------------------MMR--------ALS---------------PIQFPY-GPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred -----------------------hhh--------ccC---------------Cccccc-CchhhhhcccccceEEEEecc
Confidence 011 000 111111 11345566643 356677888
Q ss_pred CcEEEEEcCCCCcc----c-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 258 GTFYLWETNTWTSE----P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 258 g~v~iwd~~~~~~~----~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
|.+.+-|..+.... . +......+.++++|++|+.++++..++ .+.+|.
T Consensus 288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG-HVNLWA 340 (1118)
T ss_pred cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccC-cEeeec
Confidence 99999985443321 1 124455699999999999999875544 555554
No 347
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.0033 Score=62.49 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=91.8
Q ss_pred EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCc-eeeeeeeCC
Q 014302 232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIHFAS 309 (427)
Q Consensus 232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~-~i~~~~~~~ 309 (427)
++.+....++++|+-+.++|++|+..|.|++|++.++... .+..|...++.+.=+.||..+++.+.-.. ....|.+.+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 4557788999999999999999999999999999999874 45589999999999999998887554331 223333333
Q ss_pred CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCC
Q 014302 310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 389 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 389 (427)
.-. ..|.. ..-.++.|+...++-++ |+.. ..+.|||++++..+.....+.+.. .+.
T Consensus 1177 ~~~--~~Hsf-------------~ed~~vkFsn~~q~r~~---gt~~---d~a~~YDvqT~~~l~tylt~~~~~--~y~- 1232 (1516)
T KOG1832|consen 1177 TGG--PRHSF-------------DEDKAVKFSNSLQFRAL---GTEA---DDALLYDVQTCSPLQTYLTDTVTS--SYS- 1232 (1516)
T ss_pred ccC--ccccc-------------cccceeehhhhHHHHHh---cccc---cceEEEecccCcHHHHhcCcchhh--hhh-
Confidence 100 01111 03367778866555444 2221 238899999876543222222111 221
Q ss_pred ceeEEeccC
Q 014302 390 PVAFSFHDK 398 (427)
Q Consensus 390 ~~~~~f~~~ 398 (427)
..+..|.|.
T Consensus 1233 ~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1233 NNLAHFSPC 1241 (1516)
T ss_pred ccccccCCC
Confidence 246677776
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.021 Score=54.92 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=40.1
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECC
Q 014302 240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDP 287 (427)
Q Consensus 240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~sp 287 (427)
.+++|.|||+.||+|-.||+|++.|+.++....- ......|..+.|++
T Consensus 66 ~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 3899999999999999999999999998876333 35667788888874
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.21 E-value=0.2 Score=51.20 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
....|++-+.+| +||+|+.+|.||+||--..+..+ +.+...+|..|+.+.||++|+.++..-
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence 346677766666 79999999999999943322222 336789999999999999999776443
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.11 E-value=1.2 Score=41.46 Aligned_cols=68 Identities=7% Similarity=-0.086 Sum_probs=32.4
Q ss_pred EEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 106 SWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 106 ~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+|.+||+.|+.+ ..|+.-.+|-++-...+..++..+.........++|++..++..-....+.--+++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence 688999866554 44665555555444336666665543334456778888555555554556555554
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.06 E-value=0.083 Score=53.80 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=53.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
..+|++-+.+| +||+|+.+|.|||||--. ........+...+|.+|..+.|| +.+.+.++..+.|++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADG-KWILATCKTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCC-cEEEEeecceEEEEEEe
Confidence 56777766666 889999999999998432 34555556778899999999999 56666677888888875
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=1.4 Score=41.82 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=117.7
Q ss_pred eeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCC
Q 014302 102 LQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGN 177 (427)
Q Consensus 102 V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~ 177 (427)
-..++.++.+..+ ++...+..|.+.|.... ..... .........++++|+++.+.++-.. +.+.+.|-.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~-~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~---- 148 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGS-IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA---- 148 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeE-eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCC----
Confidence 3567888888844 44445689999775544 11111 1111256789999999666655542 444444433
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEec
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKF 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~ 256 (427)
+. ..... ......+ ..++++|+|..++ +-..
T Consensus 149 -----t~----------------~~~~~--------------------------~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 149 -----TN----------------KVTAT--------------------------IPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred -----CC----------------eEEEE--------------------------EecCCCc-ceEEECCCCCeEEEEecC
Confidence 00 11110 1111122 6788999999877 4457
Q ss_pred CCcEEEEEcCCCCccc-----cccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCCCccccccccccccceee
Q 014302 257 DGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAHLLPVDLPDIVSL 329 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~-----~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
++.|.+.|........ .......-..+.++|+|.++....... ..+..++....... ....+.
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~--~~~~~~-------- 250 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT--ATDLPV-------- 250 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE--Eecccc--------
Confidence 8899999976655442 123344556889999999887765544 35555554443110 000000
Q ss_pred ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
... ....+..+|+|+++.+..... +.+.+.|..+..+...
T Consensus 251 ~~~-~~~~v~~~p~g~~~yv~~~~~-----~~V~vid~~~~~v~~~ 290 (381)
T COG3391 251 GSG-APRGVAVDPAGKAAYVANSQG-----GTVSVIDGATDRVVKT 290 (381)
T ss_pred ccC-CCCceeECCCCCEEEEEecCC-----CeEEEEeCCCCceeee
Confidence 000 235678999999998854342 4588999887766543
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.05 E-value=1.1 Score=40.78 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=76.0
Q ss_pred CEEEEEecCCcEEEEEcCCCCccc------cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302 249 DYFFAAKFDGTFYLWETNTWTSEP------WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 321 (427)
Q Consensus 249 ~~l~~~~~dg~v~iwd~~~~~~~~------~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 321 (427)
+.+.+-|.||++....+....... +. .........+++..+..+++. +-.|.++..++......+.. ++
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~---~~ 223 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGK---PW 223 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEE---EE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccC---cc
Confidence 346666677877777776333211 11 111122344455555555554 44458888888776432211 11
Q ss_pred cccc---ceeeccCCceeEEEECCCCCEEEEEEecCCCc----ceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302 322 DLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDI----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 394 (427)
Q Consensus 322 ~~~~---~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~----~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
++-. ...--..+.-+-+++++....|.+....+.+. -...|-++|+.+++.+.-.+...- ..+|+
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--------~~Si~ 295 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--------IDSIA 295 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--------ESEEE
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--------cceEE
Confidence 1100 00000112446678887666666544322221 124588889999988765554321 11444
Q ss_pred eccCCCCCcee-EEEeeCceEEEEecc
Q 014302 395 FHDKFKQGPLL-SVCWSSGFCCTYPLI 420 (427)
Q Consensus 395 f~~~~~~g~~l-~v~~~~g~i~~~~~~ 420 (427)
...+ +..+| ++.-.+|.+.+|+.-
T Consensus 296 Vsqd--~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 296 VSQD--DKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EESS--SS-EEEEEETTTTEEEEEETT
T ss_pred EccC--CCcEEEEEcCCCCeEEEEeCc
Confidence 4432 22233 454457889988853
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.024 Score=35.25 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=27.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEc
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWET 265 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~ 265 (427)
..|..++|+|....||.++.+|.|.+|.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 46889999999999999999999999998
No 355
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.01 E-value=1.4 Score=41.59 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=71.5
Q ss_pred CCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 327 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (427)
+..+++++.+|.++.||..+++..-.... .....+. .++..++++ ..++.++.++..+.....+....
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~~~~p~--~~~~~vyv~-~~~G~l~~~d~~tG~~~W~~~~~-------- 308 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SSYQGPA--VDDNRLYVT-DADGVVVALDRRSGSELWKNDEL-------- 308 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc-CCccCce--EeCCEEEEE-CCCCeEEEEECCCCcEEEccccc--------
Confidence 55788888899999999988764221111 1111222 235566554 44557777776554211110000
Q ss_pred eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302 328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 407 (427)
Q Consensus 328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v 407 (427)
......+... .+..|++ ++.+ |.|+++|..+++.+...+.+ .. .+...|...++ .|-+
T Consensus 309 ---~~~~~ssp~i--~g~~l~~---~~~~---G~l~~~d~~tG~~~~~~~~~-----~~-----~~~~sp~~~~~-~l~v 366 (377)
T TIGR03300 309 ---KYRQLTAPAV--VGGYLVV---GDFE---GYLHWLSREDGSFVARLKTD-----GS-----GIASPPVVVGD-GLLV 366 (377)
T ss_pred ---cCCccccCEE--ECCEEEE---EeCC---CEEEEEECCCCCEEEEEEcC-----CC-----ccccCCEEECC-EEEE
Confidence 0001112122 3567766 4455 67999999998876433211 10 01122322233 3667
Q ss_pred EeeCceEEEE
Q 014302 408 CWSSGFCCTY 417 (427)
Q Consensus 408 ~~~~g~i~~~ 417 (427)
+..+|.|..|
T Consensus 367 ~~~dG~l~~~ 376 (377)
T TIGR03300 367 QTRDGDLYAF 376 (377)
T ss_pred EeCCceEEEe
Confidence 8899998876
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=1.2 Score=40.51 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=60.0
Q ss_pred cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee-ccCCceeEEEECCCCCEEEEEEec
Q 014302 275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKG 353 (427)
Q Consensus 275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~ 353 (427)
.+-..-+.++||||++.|+++-+....++.+.+........+... .... ...+..-.++.+.+|.+-+++..+
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~------~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG------FVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce------EEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 445566789999999999988777677777777642111111100 0011 123456677888888877543222
Q ss_pred CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302 354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 397 (427)
Q Consensus 354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 397 (427)
+ +.|.+|+.. ++++ +.+.-+.. .+.+++|..
T Consensus 234 g-----~~v~~~~pd-G~l~-----~~i~lP~~--~~t~~~FgG 264 (307)
T COG3386 234 G-----GRVVRFNPD-GKLL-----GEIKLPVK--RPTNPAFGG 264 (307)
T ss_pred C-----ceEEEECCC-CcEE-----EEEECCCC--CCccceEeC
Confidence 2 248899887 5554 23333322 244666664
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.88 E-value=0.3 Score=46.87 Aligned_cols=118 Identities=11% Similarity=0.144 Sum_probs=69.1
Q ss_pred EEEEEccCCCEEE-EEecCCc----EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc----------eeee
Q 014302 240 SILKWSPTGDYFF-AAKFDGT----FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL----------TLGS 304 (427)
Q Consensus 240 ~~~~~sp~g~~l~-~~~~dg~----v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~----------~i~~ 304 (427)
..+++||||++|| +-+..|. |+++|+.+++...-.-.......+.|.+|++.+++...+.. .++.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 3567899999988 4455554 99999999865321101111223999999999888765442 2344
Q ss_pred eeeCCCCCCccccccccccccceeecc--CCc-eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 305 IHFASKPPSLDAHLLPVDLPDIVSLTG--SQG-IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
+.+...... . ...+.. ... ...+..++|+++|++......+ ...|++.++...
T Consensus 207 ~~~gt~~~~--d---------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~ 262 (414)
T PF02897_consen 207 HKLGTPQSE--D---------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDG 262 (414)
T ss_dssp EETTS-GGG------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCT
T ss_pred EECCCChHh--C---------eeEEeecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEecccc
Confidence 444332100 0 011111 112 5678899999999875544443 145888888764
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.87 E-value=1.7 Score=41.27 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=48.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-----------------------------------------ceeec
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----------------------------------------ACILT 139 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-----------------------------------------~~~~~ 139 (427)
.|+.++|+++..-||+|...|.|.||.+...... +..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5899999999999999999999999887543000 01111
Q ss_pred cCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 140 ~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
....+.|++++.|.-| ++|+|.. |.+.|.|+.
T Consensus 83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~R 115 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLR 115 (395)
T ss_dssp ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETT
T ss_pred eccCCcEeEEecCCCc--EEEEEecCCcEEEEECC
Confidence 2246789999998665 8888876 889999997
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.62 E-value=0.63 Score=44.78 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=69.9
Q ss_pred CCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC
Q 014302 144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (427)
Q Consensus 144 ~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 223 (427)
.....++++|+| +.+++.+++.-.|+... . ++
T Consensus 33 ~~p~~ls~npng-r~v~V~g~geY~iyt~~-------------------------~------~r---------------- 64 (443)
T PF04053_consen 33 IYPQSLSHNPNG-RFVLVCGDGEYEIYTAL-------------------------A------WR---------------- 64 (443)
T ss_dssp S--SEEEE-TTS-SEEEEEETTEEEEEETT-------------------------T------TE----------------
T ss_pred cCCeeEEECCCC-CEEEEEcCCEEEEEEcc-------------------------C------Cc----------------
Confidence 346889999999 77777777877777643 0 00
Q ss_pred CCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302 224 RFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 303 (427)
Q Consensus 224 ~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~ 303 (427)
- ...+....+.|.+.++ +|+-...+.|.|+.--.............+..+-- |..|+..+. + .+.
T Consensus 65 --------~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~-~-~i~ 129 (443)
T PF04053_consen 65 --------N-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS-D-FIC 129 (443)
T ss_dssp --------E-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEET-T-EEE
T ss_pred --------c-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECC-C-CEE
Confidence 0 0122344678888665 55555588899973222211111122223444433 887776543 3 444
Q ss_pred eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
.++...... ...+... .|..|.|+++|+++|.. ..+ .+.|++....
T Consensus 130 ~yDw~~~~~-------------i~~i~v~-~vk~V~Ws~~g~~val~--t~~-----~i~il~~~~~ 175 (443)
T PF04053_consen 130 FYDWETGKL-------------IRRIDVS-AVKYVIWSDDGELVALV--TKD-----SIYILKYNLE 175 (443)
T ss_dssp EE-TTT--E-------------EEEESS--E-EEEEE-TTSSEEEEE---S------SEEEEEE-HH
T ss_pred EEEhhHcce-------------eeEEecC-CCcEEEEECCCCEEEEE--eCC-----eEEEEEecch
Confidence 444443311 1111111 47899999999999995 222 2888776544
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=1.5 Score=38.55 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=41.7
Q ss_pred EEEccCCCEEEEEecC-----CcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEc
Q 014302 242 LKWSPTGDYFFAAKFD-----GTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA 297 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~ 297 (427)
-.|||||++|+..-.| |.|-|||.+.+-. -.+..|.-.-..+.|.+||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 3589999999955433 6799999985433 345567777788999999999987643
No 361
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.34 E-value=0.66 Score=43.57 Aligned_cols=60 Identities=7% Similarity=0.088 Sum_probs=33.3
Q ss_pred CCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCccccc--------------------cCCCCeeEEEECCCCCEEEEE
Q 014302 237 GGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS--------------------STSGFVTGATWDPEGRMILLA 295 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~--------------------~~~~~v~~v~~spdg~~l~~~ 295 (427)
.-++.+.+|.|.++|+.++ ..|.||.||+......++. ...+....+..|.||++|+++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578899999999999554 5899999999865542211 112344778899999999886
Q ss_pred E
Q 014302 296 F 296 (427)
Q Consensus 296 ~ 296 (427)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 5
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.25 E-value=1.1 Score=41.71 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=67.7
Q ss_pred cCCeeEEEEccCCCceEEEecC---Ce--EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302 143 QRDVKVLEWRPNGGRSLSVGCK---GG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (427)
Q Consensus 143 ~~~v~~l~~sp~~~~~la~g~~---~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (427)
...+..+.|||....+|+-+-. .. -+||-++.++. ...++. +......+..=
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~---------------------~~~~v~--~~~~~e~~gHE 243 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS---------------------NVKKVH--RRMEGESVGHE 243 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------------------EESS-----TTEEEEEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC---------------------cceeee--cCCCCcccccc
Confidence 3457789999988788877643 22 36898873322 112221 11123445566
Q ss_pred EeCCCCCCcc-------------------cCceEE-eccCCeEEEEEccCCCEEE-EEecC---------------CcEE
Q 014302 218 SWGPDGRFPG-------------------LGTPIR-RGFGGLSILKWSPTGDYFF-AAKFD---------------GTFY 261 (427)
Q Consensus 218 ~~spdg~~l~-------------------~~~~~~-~~~~~v~~~~~sp~g~~l~-~~~~d---------------g~v~ 261 (427)
-|.|||..+. ++.... ........+--++||++++ =|+.. -.|+
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 7788877632 111100 0112233444578999887 23321 1456
Q ss_pred EEEcCCCCccccccC-----------CCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeC
Q 014302 262 LWETNTWTSEPWSST-----------SGFVTGATWDPEGRMILLAFAGSL--TLGSIHFA 308 (427)
Q Consensus 262 iwd~~~~~~~~~~~~-----------~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~ 308 (427)
++++..+.......| ...-..+.|+|||+++++.+...| .|+.+.+.
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 677765553222211 112357899999999999887665 45555443
No 363
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=0.97 Score=40.00 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=77.8
Q ss_pred CceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 229 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 229 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
++++.+-...+.++.|+|+.+.|++......-.|+=...++..... ..-.....+.|.-+|++++ +...+..++.+.
T Consensus 78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi-~dER~~~l~~~~ 156 (316)
T COG3204 78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI-VDERDRALYLFT 156 (316)
T ss_pred ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE-EehhcceEEEEE
Confidence 3444444556999999999999997776666666655555553322 2344556788888888776 456667888887
Q ss_pred eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
+......+......+.+.. ..........++|+|..+.|.++ -+. .-+.||.++.
T Consensus 157 vd~~t~~~~~~~~~i~L~~--~~k~N~GfEGlA~d~~~~~l~~a---KEr---~P~~I~~~~~ 211 (316)
T COG3204 157 VDADTTVISAKVQKIPLGT--TNKKNKGFEGLAWDPVDHRLFVA---KER---NPIGIFEVTQ 211 (316)
T ss_pred EcCCccEEeccceEEeccc--cCCCCcCceeeecCCCCceEEEE---Ecc---CCcEEEEEec
Confidence 7764221111110011111 01112256889999998888773 332 1255655543
No 364
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=2.3 Score=37.76 Aligned_cols=172 Identities=15% Similarity=0.222 Sum_probs=91.2
Q ss_pred CCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC
Q 014302 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (427)
Q Consensus 141 ~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (427)
+....|.++.|+|+...++++.....-.||-.. .|+ .++.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~Gd------------------------lirtiP------------- 124 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGD------------------------LIRTIP------------- 124 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEec-CCc------------------------eEEEec-------------
Confidence 344569999999999778888777666666433 111 111110
Q ss_pred CCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc------cc-----ccCCCCeeEEEECCCC
Q 014302 221 PDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE------PW-----SSTSGFVTGATWDPEG 289 (427)
Q Consensus 221 pdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~------~~-----~~~~~~v~~v~~spdg 289 (427)
+. .......+.|..+|++.++--.++.+.++.+...... .+ ......-..++|.|.+
T Consensus 125 -----------L~-g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~ 192 (316)
T COG3204 125 -----------LT-GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD 192 (316)
T ss_pred -----------cc-ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC
Confidence 00 0122334556666777667667777777665544210 11 1225567899999999
Q ss_pred CEEEEEEcCCc-eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302 290 RMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 368 (427)
Q Consensus 290 ~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~ 368 (427)
..|+++-..+. .|+.++... ..+..|..-..- ....+. -..|+++.|++....|.+- +.+. +.|.-.|..
T Consensus 193 ~~l~~aKEr~P~~I~~~~~~~--~~l~~~~~~~~~-~~~~~f-~~DvSgl~~~~~~~~LLVL--S~ES---r~l~Evd~~ 263 (316)
T COG3204 193 HRLFVAKERNPIGIFEVTQSP--SSLSVHASLDPT-ADRDLF-VLDVSGLEFNAITNSLLVL--SDES---RRLLEVDLS 263 (316)
T ss_pred ceEEEEEccCCcEEEEEecCC--cccccccccCcc-cccceE-eeccccceecCCCCcEEEE--ecCC---ceEEEEecC
Confidence 98887755542 455554222 122222110000 000000 0167889999655544443 3333 446666765
Q ss_pred cCc
Q 014302 369 RTP 371 (427)
Q Consensus 369 ~~~ 371 (427)
...
T Consensus 264 G~~ 266 (316)
T COG3204 264 GEV 266 (316)
T ss_pred CCe
Confidence 554
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.77 E-value=0.58 Score=44.30 Aligned_cols=164 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCccc
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDA 316 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~ 316 (427)
.|..++|+++...|+++...|.|.||.....+..... ....-....+.+ + ...+. .-.+.++.+. .+.++.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~-~~~~~~~~~~~~----~--~~~~~-~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNR-EQPPDLDYNFRR----F--SLNNS-PGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGS-S-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCcc-CCCcccCccccc----c--cccCC-CcceEEehhhCCccccc
Confidence 4788999999999999999999999977654332100 000011111111 0 00000 1123333332 112222
Q ss_pred cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeee-eeCCCCCCCceeEEe
Q 014302 317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF-IRGPGDNPKPVAFSF 395 (427)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f 395 (427)
.+.|. .......++|++++.| |=-++|++|.+ |.+.|.|++...++-.....- .........+.++.|
T Consensus 75 gf~P~----~l~~~~~g~vtal~~S-~iGFvaigy~~------G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 75 GFLPL----TLLDAKQGPVTALKNS-DIGFVAIGYES------GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp EEEEE----EEE---S-SEEEEEE--BTSEEEEEETT------SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred ccCch----hheeccCCcEeEEecC-CCcEEEEEecC------CcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence 23332 1111235699999998 55599996544 669999997766543322111 001111122335555
Q ss_pred ccC-----CCCCceeEEEeeCceEEEEecc
Q 014302 396 HDK-----FKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 396 ~~~-----~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
.-- ....-+|.||++.|.+.+|.+.
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 421 1122479999999999999875
No 366
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.77 E-value=2.2 Score=39.01 Aligned_cols=69 Identities=10% Similarity=-0.048 Sum_probs=39.1
Q ss_pred ceeeeEEcCCCCEEEEE--eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302 101 DLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~ 174 (427)
....++++.||+++++. +--..|.|-|+... +..... .-. .+..+-=++.. .+.+.+.||++.-..++.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei-~~P-GC~~iyP~~~~-~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEI-DTP-GCWLIYPSGNR-GFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEE-EGT-SEEEEEEEETT-EEEEEETTSCEEEEEETS
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeee-cCC-CEEEEEecCCC-ceEEEecCCceEEEEECC
Confidence 45667889999988775 34467888887765 232211 111 22222212222 466667788888777773
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.84 Score=43.57 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=43.8
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG 298 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~ 298 (427)
..|.+-..+| +|++|+.+|.||+||- .+.. ..+.+...+|..|.-+.||++|++++..
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3444444444 8999999999999997 4433 3444888999999999999999976643
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.70 E-value=0.66 Score=34.74 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=42.8
Q ss_pred eeeeEEcC---CC-CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 102 V~~l~~sp---~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
|++|++.. || +-|++|+.|..||||+=+. . .........|+++.-...+ ++..+-..|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~-~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----I-VAEITETDKVTSLCSLGGG-RFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----E-EEEEecccceEEEEEcCCC-EEEEEecCCEEEEEeCc
Confidence 66676644 44 3899999999999976332 2 2222334568888877665 44444455888887654
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=4.2 Score=38.54 Aligned_cols=127 Identities=19% Similarity=0.226 Sum_probs=83.5
Q ss_pred CeEEEEEccCCCEEEEEec---CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302 238 GLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 314 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~ 314 (427)
....++++|+++.++++.. ++++.+.|..+.+..........-..++++|+|..++.+...++.+..++........
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 4457889999988885544 6888888888777644442222228999999999888877677777777744431110
Q ss_pred cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302 315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 375 (427)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~ 375 (427)
... ............+.++|+|.++.+....+.+ +.+...|..++.....
T Consensus 197 -~~~-------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~---~~v~~id~~~~~v~~~ 246 (381)
T COG3391 197 -GSV-------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGS---NNVLKIDTATGNVTAT 246 (381)
T ss_pred -ccc-------ccccccCCCCceEEECCCCCEEEEEeccCCC---ceEEEEeCCCceEEEe
Confidence 000 0011122255788999999988886555543 4588888888776643
No 370
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=1.9 Score=45.20 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=43.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc----ccCCCCeeEEEECCCCCEEEE
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILL 294 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~~ 294 (427)
...++++|+|.|+.+++|-..|++..|...-.....+ ......|.+|+|-..-.++++
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 3678999999999999999999999987543321111 123678999999887777665
No 371
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.30 E-value=5.1 Score=38.20 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=44.7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCC--cceeeccCCcCCeeEEEEcc----CCCceEEEecCCeEEEEecc
Q 014302 111 KHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 111 g~~lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp----~~~~~la~g~~~~i~iw~~~ 173 (427)
...|++|+..|.++||+...... ....+......+|..++.-. .....||+=.-..+.||.+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 35899999999999998755422 23455556677888888653 23357777666888888885
No 372
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.23 E-value=5 Score=37.83 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=35.0
Q ss_pred ceeeeEEcCCCCEEEEEe-----------CCC-eEEEEEccCC-CCc-ceeeccCCcCCeeEEEEccCCCceEEEecCCe
Q 014302 101 DLQGVSWHQHKHIVAFIS-----------GST-QVIVRDYEDS-GKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 166 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~-----------~d~-~v~vwd~~~~-~~~-~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~ 166 (427)
....|+|.++|+++++-. ..+ .|.+++-... +.. ..............++|.+++ ++++. ...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CCe
Confidence 457899999999776642 122 6666543222 111 112222223356889999887 44443 333
Q ss_pred EE
Q 014302 167 IC 168 (427)
Q Consensus 167 i~ 168 (427)
|.
T Consensus 92 i~ 93 (367)
T TIGR02604 92 IL 93 (367)
T ss_pred EE
Confidence 44
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.12 E-value=4.7 Score=37.14 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=87.4
Q ss_pred eeeeEEcCC----CCEEEEEeC---------C-CeEEEEEccCC----CCcceeeccCCcCCeeEEEEccCCCceEEEec
Q 014302 102 LQGVSWHQH----KHIVAFISG---------S-TQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 163 (427)
Q Consensus 102 V~~l~~sp~----g~~lat~~~---------d-~~v~vwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~ 163 (427)
+..+.+..+ ..+|++|+. . |.+.++++... ..-.........++|++++-- ++ + |+++.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEee
Confidence 344455543 458888743 2 88999998873 111122223457789888766 33 4 66666
Q ss_pred CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEE
Q 014302 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILK 243 (427)
Q Consensus 164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~ 243 (427)
.+.+.+|++... . .+...++ +...+..++
T Consensus 106 g~~l~v~~l~~~-----------------------~-------------~l~~~~~---------------~~~~~~i~s 134 (321)
T PF03178_consen 106 GNKLYVYDLDNS-----------------------K-------------TLLKKAF---------------YDSPFYITS 134 (321)
T ss_dssp TTEEEEEEEETT-----------------------S-------------SEEEEEE---------------E-BSSSEEE
T ss_pred cCEEEEEEccCc-----------------------c-------------cchhhhe---------------ecceEEEEE
Confidence 788999999710 1 0111111 111223334
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCC--ccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWT--SEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~--~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
....+.++++|.....+.++..+... ..... .....+.++.+-++++.++ ++...+.+..+....
T Consensus 135 l~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-S
T ss_pred EeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEECC
Confidence 44446799999988888887655422 22111 3456688898887777555 456667888888764
No 374
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.09 E-value=4.5 Score=36.76 Aligned_cols=157 Identities=18% Similarity=0.308 Sum_probs=73.3
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 314 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~ 314 (427)
.+.+..+.-++||++++++.....+.-||--...-... ......|.++.|+|++...+.+ .++ .++.-+..+....+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG-QIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT-EEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc-EEEEccCCCCcccc
Confidence 35677788899999999887666666777432111111 1356789999999998877654 333 44443311111111
Q ss_pred cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302 315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 394 (427)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
..+..+. ...+-.+.+++|.+++...|+ ++. |++ +.....++--...+. +.....+...|.
T Consensus 222 ~~~~~~~-------~~~~~~~ld~a~~~~~~~wa~---gg~----G~l-~~S~DgGktW~~~~~----~~~~~~n~~~i~ 282 (302)
T PF14870_consen 222 SEPIIPI-------KTNGYGILDLAYRPPNEIWAV---GGS----GTL-LVSTDGGKTWQKDRV----GENVPSNLYRIV 282 (302)
T ss_dssp ---B-TT-------SS--S-EEEEEESSSS-EEEE---EST----T-E-EEESSTTSS-EE-GG----GTTSSS---EEE
T ss_pred ccccCCc-------ccCceeeEEEEecCCCCEEEE---eCC----ccE-EEeCCCCccceECcc----ccCCCCceEEEE
Confidence 1111111 112225899999999998888 443 223 333333433211111 112334566788
Q ss_pred eccCCCCCceeEEEeeCceEEEE
Q 014302 395 FHDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 395 f~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
|.+. ..-.++| .+|.|.-|
T Consensus 283 f~~~---~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 283 FVNP---DKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEET---TEEEEE--STTEEEEE
T ss_pred EcCC---CceEEEC-CCcEEEEe
Confidence 8754 3446666 77776554
No 375
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.96 E-value=0.21 Score=30.14 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCeEEEEEccCCC---EEEEEecCCcEEEEEcCC
Q 014302 237 GGLSILKWSPTGD---YFFAAKFDGTFYLWETNT 267 (427)
Q Consensus 237 ~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~ 267 (427)
+.+.+++|||... +|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999997554 888888889999999995
No 376
>PRK10115 protease 2; Provisional
Probab=93.42 E-value=3.9 Score=42.12 Aligned_cols=114 Identities=9% Similarity=0.068 Sum_probs=61.3
Q ss_pred eEEEEEccCCCEEEEE-ecCC----cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc-----eeeeeeeC
Q 014302 239 LSILKWSPTGDYFFAA-KFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFA 308 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~-~~dg----~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~-----~i~~~~~~ 308 (427)
+..+.|||||++|+.+ ..+| .|++.|+.++...... ....-..++|++|++.|+++..+.. .++..++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 4467789999988843 3333 4888898877532111 1111156999999998888765431 34444444
Q ss_pred CCCCCccccccccccccceeecc-CCcee-EEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 309 SKPPSLDAHLLPVDLPDIVSLTG-SQGIE-KIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
+.... . ...+.. ..... .+..+.|++++++......+ +.+.+|+.
T Consensus 208 t~~~~--d---------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~---~~~~l~~~ 254 (686)
T PRK10115 208 TPASQ--D---------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT---SEVLLLDA 254 (686)
T ss_pred CChhH--C---------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc---ccEEEEEC
Confidence 33100 0 000111 01122 22334588887765544444 45888874
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.40 E-value=11 Score=38.90 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=57.0
Q ss_pred CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (427)
Q Consensus 142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (427)
..-.|..|..||+| .+||..+..+|.|-.+... |-....++.. ...+.|-++.-
T Consensus 83 ~~f~v~~i~~n~~g-~~lal~G~~~v~V~~LP~r------------------------~g~~~~~~~g-~~~i~Crt~~v 136 (717)
T PF10168_consen 83 PLFEVHQISLNPTG-SLLALVGPRGVVVLELPRR------------------------WGKNGEFEDG-KKEINCRTVPV 136 (717)
T ss_pred CceeEEEEEECCCC-CEEEEEcCCcEEEEEeccc------------------------cCccccccCC-CcceeEEEEEe
Confidence 34578999999999 6777666677777766410 0000001111 22333333332
Q ss_pred CCCCcccCceEEeccCCeEEEEEccC---CCEEEEEecCCcEEEEEcCCCC
Q 014302 222 DGRFPGLGTPIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWT 269 (427)
Q Consensus 222 dg~~l~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~dg~v~iwd~~~~~ 269 (427)
+..+... .....|..+.|+|. +..|++-+.|+++|+||+....
T Consensus 137 ~~~~~~~-----~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 137 DERFFTS-----NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred chhhccC-----CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 2222211 12345778889886 4788888889999999996443
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.30 E-value=1.6 Score=43.69 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=47.5
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEc--cCCCceEEEecCCeEEEEecc
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~s--p~~~~~la~g~~~~i~iw~~~ 173 (427)
+-+.-|.-++..++-+...++.|||......+. .......+.|.++.|. |+++.+|++|..+.|.++.-.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~-~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY-EESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEE-eeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 334445545544455556788999988772111 1112346789999997 788889999999999988653
No 379
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.81 E-value=8.1 Score=35.83 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=32.7
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee----ccCCcCCeeEEEEccC
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPN 154 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~----~~~~~~~v~~l~~sp~ 154 (427)
-++|+|.|||+++++ ...|.|++++-+......... ..........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 478999999877665 569999997722221011111 1234567899999995
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.54 E-value=8 Score=35.14 Aligned_cols=165 Identities=15% Similarity=0.305 Sum_probs=74.6
Q ss_pred eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE-EEeccCCCCccccccCcccccccccCCC
Q 014302 118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNAASVRSGAASFLGALSRGP 196 (427)
Q Consensus 118 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (427)
+..|.| |.-...+..-......-...+..+.-++|| .+++++..+.+. -|+-.
T Consensus 121 ~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G----------------------- 174 (302)
T PF14870_consen 121 GDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPG----------------------- 174 (302)
T ss_dssp ETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-----------------------
T ss_pred cCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCC-----------------------
Confidence 345554 434444333333334555778999999999 788888887654 56543
Q ss_pred CcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcC----CCCc--
Q 014302 197 GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----TWTS-- 270 (427)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~----~~~~-- 270 (427)
...|.+.. +.....+..|.|+|++...+++ ..|.|+.=+.. +...
T Consensus 175 ~~~w~~~~----------------------------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 175 QTTWQPHN----------------------------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI 225 (302)
T ss_dssp -SS-EEEE------------------------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B
T ss_pred CccceEEc----------------------------cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc
Confidence 11122211 1123467788888887655544 67777776611 1111
Q ss_pred cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302 271 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 349 (427)
Q Consensus 271 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~ 349 (427)
.........+..++|.+++...++++++. ++.-.+.-.+.+.... .....+....|.|..+.+-+|.
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----l~~S~DgGktW~~~~~--------~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGGSGT----LLVSTDGGKTWQKDRV--------GENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEESTT-----EEEESSTTSS-EE-GG--------GTTSSS---EEEEEETTEEEEE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeCCcc----EEEeCCCCccceECcc--------ccCCCCceEEEEEcCCCceEEE
Confidence 11113344589999999988888665443 3333332111111100 0011225678888766666666
No 381
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.51 E-value=0.4 Score=28.94 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCeeEEEEccCCC--ceEEEecC-CeEEEEecc
Q 014302 144 RDVKVLEWRPNGG--RSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 144 ~~v~~l~~sp~~~--~~la~g~~-~~i~iw~~~ 173 (427)
+.|+++.|||... .+|+.+.+ +.+.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 3689999998764 68888877 899999987
No 382
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.38 E-value=4.8 Score=41.34 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=53.8
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc--C--------ce-E--EEeeee--eeeCCCCCCCceeEEeccC
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--T--------PL-I--SLSLIG--FIRGPGDNPKPVAFSFHDK 398 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~--~--------~~-~--~~~~~~--~~~~~~~~~~~~~~~f~~~ 398 (427)
.|..+.++|+|++||.. |... |.|-.+.. + +. + ...+.+ ++ ..........+.|||.
T Consensus 86 ~v~~i~~n~~g~~lal~--G~~~-----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALV--GPRG-----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPW 157 (717)
T ss_pred eEEEEEECCCCCEEEEE--cCCc-----EEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCC
Confidence 78999999999999996 4432 66666632 1 10 1 011111 11 1122334668999999
Q ss_pred CCCCceeEEEeeCceEEEEecc
Q 014302 399 FKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 399 ~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
...+..|.|=++|+.|.+|++.
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecC
Confidence 8888999999999999999984
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.17 E-value=8.3 Score=34.47 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=40.5
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
..+++|+.|+.+| +.++++.... ...... +...|..+...|+- .+|.+=.++.+.+++++
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~-~~llvLsd~~l~~~~L~ 64 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPEL-NLLLVLSDGQLYVYDLD 64 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEeccc-CEEEEEcCCccEEEEch
Confidence 3578999999888 7888873331 122221 22349999999987 44444456899999886
No 384
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.13 E-value=11 Score=35.65 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=33.2
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCe-eEEEEccCCCceEEEecCCeEEEEecc
Q 014302 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV-KVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+..+.+++.++.+..+|..++ +. .........+ ..+.. ++..+++.+.++.+..+|..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG--~~-~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~ 123 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG--KR-LWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAE 123 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC--cE-eeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECC
Confidence 567778888889888887766 11 1111111111 12222 34356665666888888875
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.97 E-value=2.1 Score=42.77 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=65.4
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEEC--CCCCEEEEEEcCCceeeeeee--C---
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWD--PEGRMILLAFAGSLTLGSIHF--A--- 308 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~s--pdg~~l~~~~~~~~~i~~~~~--~--- 308 (427)
...-+.-|.-++.-++.+....+.|||.+....+... .....|.++.|. |||+.+++.+-.. .+.++.- .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~-~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH-HVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc-EEEEEEccchhhh
Confidence 3344445555554445555667999999887753222 457889999995 6888877665444 2222211 1
Q ss_pred CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
+..+.+. ....+++. ... .-+|.+..|-++|..++.+ |+ .+.|+|-
T Consensus 110 ~~~p~w~-~i~~i~i~---~~T-~h~Igds~Wl~~G~LvV~s--GN------qlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWA-PIRKIDIS---SHT-PHPIGDSIWLKDGTLVVGS--GN------QLFVFDK 155 (631)
T ss_pred cCCcccc-eeEEEEee---cCC-CCCccceeEecCCeEEEEe--CC------EEEEECC
Confidence 1111110 00001111 111 1278999999999888764 43 2888874
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=2.5 Score=40.53 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=50.4
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
...|.+-..+| +||+|+.+|.|||||--. ........+...+|..+..+.+| ..|.+.++..+.+-++.
T Consensus 432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 432 NFSCFATTESG-YIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADG-KWILATCKTYLLLIDTL 500 (644)
T ss_pred ccceeeecCCc-eEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccC-cEEEEecccEEEEEEEe
Confidence 34444444344 889999999999998632 24555667788899999999999 56666677788877765
No 387
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=6.2 Score=37.29 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=77.7
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccc
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS 180 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~ 180 (427)
+.+=|...++.|. +...|.+.=|.....+.. +........++|.++.||+|. ++||+-. ++.|.+.+.. +.++
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~-~d~~-- 100 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFI-PDNS-- 100 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecC-CCch--
Confidence 3344443333333 333444555666655333 333334466799999999999 7887764 4888888764 1110
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 260 (427)
......+ -+.....|..+.|+.+ .-+|.-+ +..+
T Consensus 101 --------------------~l~~~~~------------------------ck~k~~~IlGF~W~~s-~e~A~i~-~~G~ 134 (657)
T KOG2377|consen 101 --------------------QLEYTQE------------------------CKTKNANILGFCWTSS-TEIAFIT-DQGI 134 (657)
T ss_pred --------------------hhHHHHH------------------------hccCcceeEEEEEecC-eeEEEEe-cCCe
Confidence 0000000 0011223556666644 4444333 3335
Q ss_pred EEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEc
Q 014302 261 YLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA 297 (427)
Q Consensus 261 ~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~ 297 (427)
.+|-....+. .....+...|.-..|.++-+.++.+++
T Consensus 135 e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 135 EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 5555443332 334477888888899998887666554
No 388
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.66 E-value=7.6 Score=32.98 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=68.8
Q ss_pred CEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCc-----eeeeeeeCCCC----C----C
Q 014302 249 DYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKP----P----S 313 (427)
Q Consensus 249 ~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~-----~i~~~~~~~~~----~----~ 313 (427)
+.|+.+.....|.+|++....+.... ..-+.|..+.++..|.||++--.... .++.+.-|... . .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555566788999999855543322 45588999999999999997544332 44555555532 1 1
Q ss_pred ccccccccccc-------cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 314 LDAHLLPVDLP-------DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 314 ~~~~~~~~~~~-------~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
+.||....... +...+.....+.+++-.|-.--|++ |++ +++.||.++...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV---g~~----~~l~lf~l~~~~ 166 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV---GCG----NKLVLFTLKYQT 166 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE---EcC----CEEEEEEEEEEE
Confidence 22332211111 1112234457888888875444555 343 459999986543
No 389
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.27 E-value=14 Score=35.36 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=40.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEE
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMIL 293 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~ 293 (427)
+++..++.||+|++||.-..+|.+.+....-.+.... .........+.|.-+...++
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 5789999999999999888889998887654443211 13345677888987654443
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=0.67 Score=47.96 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=48.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC---CeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+|++++|+.+|.+++.|-.+|.|.+||+..+ +.......|.. .|..+.|..++ ..+.++..++. +|.+.
T Consensus 132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs-f~~lv 203 (1206)
T KOG2079|consen 132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS-FWKLV 203 (1206)
T ss_pred cceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc-eEEEE
Confidence 8999999999999999999999999999986 33333333333 34444455555 45556655443 67665
No 391
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.21 E-value=6.1 Score=38.13 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=37.4
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc------cc--cCCCCeeEEEECCCC
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--STSGFVTGATWDPEG 289 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------~~--~~~~~v~~v~~spdg 289 (427)
...-+.|+|.|||+.|++--..|.|++++........ .. ........++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3467789999999877666546999999765443211 11 135778999999873
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=0.81 Score=47.42 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=52.1
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cC---CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-ST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
.++|++++|+.+|+.++.|-.+|.|.+||+...+..+.. .+ ...+..+.|..++..+++ +..+|..+...+..
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt-~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLT-SDTGGSFWKLVFNK 206 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEE-ccCCCceEEEEech
Confidence 468999999999999999999999999999987764333 22 334555666666775654 45555555554443
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.01 E-value=22 Score=37.15 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=44.6
Q ss_pred cCCceeEEEECCCCCEEEEEEecCC--------CcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302 331 GSQGIEKIAWDASGERLAVSYKGGD--------DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 402 (427)
Q Consensus 331 ~~~~i~~v~~sp~g~~La~~~~~~~--------d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g 402 (427)
.+.....+++.+....++++..-.+ ...-..++++|-++-+.+...... + .....+.+.+.|+.+ .+
T Consensus 713 l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~--~-~E~~~Si~s~~~~~d--~~ 787 (1096)
T KOG1897|consen 713 LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE--R-NETALSIISCKFTDD--PN 787 (1096)
T ss_pred CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccc--c-cceeeeeeeeeecCC--Cc
Confidence 4456778888886666666443222 111234666666655444322111 0 011112334557765 25
Q ss_pred ceeEEEee----------CceEEEEec
Q 014302 403 PLLSVCWS----------SGFCCTYPL 419 (427)
Q Consensus 403 ~~l~v~~~----------~g~i~~~~~ 419 (427)
..++||++ .|+|.+|.+
T Consensus 788 t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 788 TYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred eEEEEEEEeeccCCCCcccceEEEEEE
Confidence 67888875 688888765
No 394
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=15 Score=37.67 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=53.5
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
++.+++.|.+-+.+|+|-.||.|..+.=+-. ........+....+|+.+++..++...+.++....|.+|.+.
T Consensus 127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred cceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 6889999999999999999999987532211 111222223456789999999999765666777889999886
No 395
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.74 E-value=0.87 Score=26.77 Aligned_cols=28 Identities=29% Similarity=0.720 Sum_probs=19.9
Q ss_pred cCCeEEEEEccCCCEEE-EEecC--CcEEEE
Q 014302 236 FGGLSILKWSPTGDYFF-AAKFD--GTFYLW 263 (427)
Q Consensus 236 ~~~v~~~~~sp~g~~l~-~~~~d--g~v~iw 263 (427)
........|||||++|+ ++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34566788999999988 66666 666666
No 396
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.60 E-value=11 Score=32.73 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=34.1
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCcccc--ccC---CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 247 TGDYFFAAKFDGTFYLWETNTWTSEPW--SST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 247 ~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
.+..+++++.++.++.+|..+++..-. ... ...........++..++++.. .+.+..++..+.
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG 142 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTG 142 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCC
Confidence 455666666788899999888876322 111 111122222223666666544 446777776654
No 397
>PRK10115 protease 2; Provisional
Probab=90.45 E-value=24 Score=36.50 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=38.1
Q ss_pred ceeeeEEcCCCCEEEEEeC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302 101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~ 164 (427)
.+..+.|||||++||.+.. ...+++.|+.++ .......... -..++|++|++.++.+..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPELLDNV--EPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCccccCc--ceEEEEeeCCCEEEEEEec
Confidence 6788899999999988733 235777777655 2111111111 1469999999767666543
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.16 E-value=1.2 Score=37.85 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEe-cCCeEEEEecc
Q 014302 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVG-CKGGICIWAPS 173 (427)
Q Consensus 111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g-~~~~i~iw~~~ 173 (427)
+.-|++|+.+|.|.+|.+...+...-.. ..-...|.+. + |.+. .+..++ .++.|+.|++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s~~e~i~~~-I-p~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CSGEESIDLG-I-PNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-hcccccceec-c-ccccccceeEEeccCCceeeeccc
Confidence 4478899999999999887442111111 1112222222 1 2322 355555 45889999887
No 399
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.14 E-value=0.075 Score=49.90 Aligned_cols=137 Identities=20% Similarity=0.235 Sum_probs=94.1
Q ss_pred eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccc
Q 014302 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVR 182 (427)
Q Consensus 104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~ 182 (427)
...|-|.+.-|+.++.+..+..||-.. .........+...+++|.-+++.++..+.. +.+.+|+++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~-------- 106 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-------- 106 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh--------
Confidence 346888887788888888888876432 233333455667889999888666555544 8899999971
Q ss_pred cCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEE
Q 014302 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i 262 (427)
. ..+.++.. ....-.-+.|++....++.+...|.++|
T Consensus 107 -e-----------------ytqqLE~g-------------------------g~~s~sll~wsKg~~el~ig~~~gn~vi 143 (615)
T KOG2247|consen 107 -E-----------------YTQQLESG-------------------------GTSSKSLLAWSKGTPELVIGNNAGNIVI 143 (615)
T ss_pred -h-----------------hHHHHhcc-------------------------CcchHHHHhhccCCccccccccccceEE
Confidence 0 11112211 0001112568888888888888999999
Q ss_pred EEcCCCCcccccc-CCCCeeEEEECCCCCEEEEE
Q 014302 263 WETNTWTSEPWSS-TSGFVTGATWDPEGRMILLA 295 (427)
Q Consensus 263 wd~~~~~~~~~~~-~~~~v~~v~~spdg~~l~~~ 295 (427)
++..+.+.....+ |...+.+++|.+.+..+.+.
T Consensus 144 ynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 144 YNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred EeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 9988777665555 99999999999988776643
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=90.14 E-value=14 Score=34.26 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=39.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~ 168 (427)
.+.++.+.|++.+++++ ..|.+.. ..+.....-......-...++++.+.+++ .+++++..+.+.
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg~~G~~~ 238 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLARGGQIR 238 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEecCCEEE
Confidence 68899999998877776 4555432 12222111122223345678999999998 677777666543
No 401
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=14 Score=33.03 Aligned_cols=107 Identities=16% Similarity=0.226 Sum_probs=65.8
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCcccc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDAH 317 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~~ 317 (427)
.|.-.|++..++..|.-+-++|+...+...+. ........++.| |++-..+..++ -+.++++.+. .+.+.++
T Consensus 133 gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~-GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 133 GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDG-GLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCC-CeEEEEccCCCCCeEEEE
Confidence 35557889888887777888899877664433 333334566666 55554444444 6777888775 2333332
Q ss_pred ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302 318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 371 (427)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~ 371 (427)
.. -+..+.++..+++-.++++ .++. +.+-|.....
T Consensus 210 ~n-----------~g~g~~sv~vsdnr~y~vv---y~eg-----vlivd~s~~s 244 (370)
T COG5276 210 YN-----------TGPGTYSVSVSDNRAYLVV---YDEG-----VLIVDVSGPS 244 (370)
T ss_pred Ee-----------cCCceEEEEecCCeeEEEE---cccc-----eEEEecCCCC
Confidence 22 1226788888888888877 3332 6666665443
No 402
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.86 E-value=25 Score=35.91 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=79.2
Q ss_pred eEEEEEccCCCEEEEEecC----CcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCc-eeeeeeeCCCCC
Q 014302 239 LSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIHFASKPP 312 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~-~i~~~~~~~~~~ 312 (427)
-..+.|-.|..+.+++... ..+|+|.- .++.... ....+.-..+.|-|.|+.+++-..++. .--.+.+.....
T Consensus 204 k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG 282 (1243)
T COG5290 204 KKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG 282 (1243)
T ss_pred ceEEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC
Confidence 3456788888888866533 33677652 2222211 133344456899999999987654331 111122222211
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 392 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
--.|... . .......+..++|+-....||++ -+ ..|.+|-..+-.++... -++.++ ..-
T Consensus 283 LrHGef~-l------r~~~dEk~~~~~wn~~s~vlav~--~~-----n~~~lwttkNyhWYLK~---e~~ip~----~s~ 341 (1243)
T COG5290 283 LRHGEFD-L------RVGCDEKAFLENWNLLSTVLAVA--EG-----NLLKLWTTKNYHWYLKV---ERQIPG----ISY 341 (1243)
T ss_pred cccCCcc-c------cCCchhhhhhhhhhHHHHHHHHh--hc-----ceEEEEEccceEEEEEE---eecCCC----cce
Confidence 1111110 0 00111245778898888888873 22 34999998776654222 111222 224
Q ss_pred EEeccCCCCCceeEEEeeCceEEEEecc
Q 014302 393 FSFHDKFKQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~ 420 (427)
+.|||.-. ..|.+. ..++|....|-
T Consensus 342 vkwhpe~~--nTl~f~-d~~~I~~V~f~ 366 (1243)
T COG5290 342 VKWHPEEK--NTLLFR-DGERILRVFFS 366 (1243)
T ss_pred eeeccccC--cEEEEe-cCCeEEEEEee
Confidence 67888632 223332 34455544443
No 403
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.84 E-value=1.1 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=18.8
Q ss_pred cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 275 STSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 275 ~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
..........|||||+.|++++...
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCCccccCEEEecCCCEEEEEecCC
Confidence 3445678899999999999988665
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.67 E-value=4 Score=37.82 Aligned_cols=110 Identities=14% Similarity=0.257 Sum_probs=54.8
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-------cccCCCCeeEEEECCC---CCEEEEEEcCC--------
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-------WSSTSGFVTGATWDPE---GRMILLAFAGS-------- 299 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~v~~v~~spd---g~~l~~~~~~~-------- 299 (427)
.-+.|+|.|||+.+++ ...|.|++++........ ..........++++|+ +.+|++.....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3568999999877665 559999999932222111 1245567889999994 33443333311
Q ss_pred ceeeeeeeCCCCCCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEE
Q 014302 300 LTLGSIHFASKPPSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVS 350 (427)
Q Consensus 300 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~ 350 (427)
..+..+.+......+......+ ..+......| .-..|+|.|||.++++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG~LYvs~ 131 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDGKLYVSV 131 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEE
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCCCCcEEEEe
Confidence 2344444444311111111111 1111001111 45779999999665554
No 405
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.35 E-value=3.5 Score=38.83 Aligned_cols=162 Identities=13% Similarity=0.140 Sum_probs=84.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-Cc---CCee-EEEEccCCCceEEEecCCeEEEEec-cC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQ---RDVK-VLEWRPNGGRSLSVGCKGGICIWAP-SY 174 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~---~~v~-~l~~sp~~~~~la~g~~~~i~iw~~-~~ 174 (427)
.|..+-..|||++|..-+. .++.|+++.....+...+... .. ..|+ ++..-..|..+|+...||.|.-|-. ..
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 6788889999998877654 678888887662222222221 11 1222 2222234545777777788887743 21
Q ss_pred CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 254 (427)
++.+ . ...+....+.| ..+..+.-..+-+-+++-
T Consensus 301 ~~~p--------------------~-----------l~h~R~f~l~p---------------a~~~~l~pe~~rkgF~~l 334 (733)
T COG4590 301 DGQP--------------------H-----------LNHIRNFKLAP---------------AEVQFLLPETNRKGFYSL 334 (733)
T ss_pred CCCC--------------------c-----------ceeeeccccCc---------------ccceeeccccccceEEEE
Confidence 1110 0 11111111111 111111111122234455
Q ss_pred ecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302 255 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 311 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~ 311 (427)
+..|++.++.....+...+...-....-+++||++.+|++ .+.+.+....+.+..
T Consensus 335 ~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~--e~~gki~~~~l~Nr~ 389 (733)
T COG4590 335 YRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS--EDQGKIRLAQLENRN 389 (733)
T ss_pred cCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee--ecCCceEEEEecCCC
Confidence 5566666665443333222222335667889999999975 666677777777653
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.21 E-value=2.9 Score=36.07 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=40.6
Q ss_pred EccCCCEEEEEecCCcEEEEEcCCCCccc-------cc--------cCCCCeeEEEECCCCCEEEEEEcC
Q 014302 244 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-------WS--------STSGFVTGATWDPEGRMILLAFAG 298 (427)
Q Consensus 244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-------~~--------~~~~~v~~v~~spdg~~l~~~~~~ 298 (427)
+..++++|++-+.+|.+++||+.+.+... .. .....|..+.++.+|.-+++-+++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 55678899999999999999999887521 11 245667888888888877765443
No 407
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.95 E-value=4.8 Score=33.24 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=23.1
Q ss_pred CCeEEEEEccCC-----C-EEEEEecCCcEEEEEcC
Q 014302 237 GGLSILKWSPTG-----D-YFFAAKFDGTFYLWETN 266 (427)
Q Consensus 237 ~~v~~~~~sp~g-----~-~l~~~~~dg~v~iwd~~ 266 (427)
..+..++|||.| + .|++-+.++.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378889999854 3 46688889999999754
No 408
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=24 Score=34.24 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 270 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 270 (427)
.|..+..++.|..++..+.+|.+.++=.+.+..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~ 137 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGK 137 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCc
Confidence 577788999999999777788877765444443
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.59 E-value=3.6 Score=35.50 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=46.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCCCCcc-----eeecc-------CCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 107 WHQHKHIVAFISGSTQVIVRDYEDSGKDA-----CILTS-------DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 107 ~sp~g~~lat~~~d~~v~vwd~~~~~~~~-----~~~~~-------~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+..++.+|++.+.+|.+++||+....... ..+.. .....|..+..+.+| ..+++-.++....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEeCCCEEEeccc
Confidence 55678899999999999999998861110 01111 345678899999888 56666666777888876
No 410
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=87.65 E-value=23 Score=32.61 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=61.0
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 179 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~ 179 (427)
.|++++-- ++. |+++ .++.|.+|++.....-...........+.++... + .++++| ...++.++..+..
T Consensus 90 ~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~---- 159 (321)
T PF03178_consen 90 PVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEE---- 159 (321)
T ss_dssp -EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETT----
T ss_pred cceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEcc----
Confidence 57777644 444 5555 3579999999988411111112222356666555 4 344555 4488888766510
Q ss_pred ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 259 (427)
. . .+..++=+ .....++++.+-++++.++.+..+|.
T Consensus 160 -------------------~-~-----------~l~~va~d-------------~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 160 -------------------N-N-----------KLILVARD-------------YQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp -------------------T-E------------EEEEEEE-------------SS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred -------------------C-C-----------EEEEEEec-------------CCCccEEEEEEecCCcEEEEEcCCCe
Confidence 0 0 00000000 01224667777766678889999999
Q ss_pred EEEEEcCC
Q 014302 260 FYLWETNT 267 (427)
Q Consensus 260 v~iwd~~~ 267 (427)
+.++....
T Consensus 196 l~~l~~~~ 203 (321)
T PF03178_consen 196 LFVLRYNP 203 (321)
T ss_dssp EEEEEE-S
T ss_pred EEEEEECC
Confidence 99998763
No 411
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.57 E-value=22 Score=32.45 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=78.0
Q ss_pred EEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302 243 KWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 321 (427)
Q Consensus 243 ~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 321 (427)
.|.++...|+ +--..+.|.-||..+++...+...............+..++ +..+ ++.++...... ...+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~--~~~g--~~~~~~~~~~~-~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIA--CEHG--VRLLDPDTGGK-ITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEE--Eccc--cEEEeccCCce-eEEecccc
Confidence 4777777666 55567889999988776665554444434444455444443 3333 22333321100 00000000
Q ss_pred ccccceeeccCCceeEEEECCCCCEEEEEEe-----cCCCcceeEEEEEEec-cCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302 322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYK-----GGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKPVAFSF 395 (427)
Q Consensus 322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~-----~~~d~~~g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f 395 (427)
+. ......+.+...|+|.+.+.... -......| .||.+. .+....+.... ...+..++|
T Consensus 106 ~~------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G--~lyr~~p~g~~~~l~~~~-------~~~~NGla~ 170 (307)
T COG3386 106 DG------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG--SLYRVDPDGGVVRLLDDD-------LTIPNGLAF 170 (307)
T ss_pred CC------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc--eEEEEcCCCCEEEeecCc-------EEecCceEE
Confidence 00 00125678889999998877433 11112224 444444 34433322211 122557889
Q ss_pred ccCCCCCceeEEE-eeCceEEEEecc
Q 014302 396 HDKFKQGPLLSVC-WSSGFCCTYPLI 420 (427)
Q Consensus 396 ~~~~~~g~~l~v~-~~~g~i~~~~~~ 420 (427)
.|+ ++.|-+. +..++|+-|++-
T Consensus 171 SpD---g~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 171 SPD---GKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CCC---CCEEEEEeCCCCeEEEEecC
Confidence 887 5444444 344788887764
No 412
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.60 E-value=17 Score=35.24 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC
Q 014302 144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (427)
Q Consensus 144 ~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 223 (427)
-.|..+..++.|..++.+|.+| +.|..+.+ .|-....++.. ...|+|-.+.-+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~G-i~vMeLp~------------------------rwG~~s~~eDg-k~~v~CRt~~i~~ 157 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKG-LMVMELPK------------------------RWGKNSEFEDG-KSTVNCRTTPVAE 157 (741)
T ss_pred EEEEEEEecCCCceEEEecCCe-eEEEEchh------------------------hcCccceecCC-CceEEEEeecccc
Confidence 3577888899995555555555 55544420 00111112222 4456666655444
Q ss_pred CCcccCceEEeccCCeEEEEEccCC---CEEEEEecCCcEEEEEcCCCCc
Q 014302 224 RFPGLGTPIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS 270 (427)
Q Consensus 224 ~~l~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~ 270 (427)
++..+...+ .+..++|+|+. ..|..-+.|..||+||+.....
T Consensus 158 ~~ftss~~l-----tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 158 RFFTSSTSL-----TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeeccCCce-----eeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 433322222 34567899987 4677777799999999976654
No 413
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.03 E-value=32 Score=32.71 Aligned_cols=58 Identities=17% Similarity=0.024 Sum_probs=30.5
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeE-EEEccCCCceEEEecCCeEEEEecc
Q 014302 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+..+..++.++.+..+|..++.. .........+.+ .... ++ .+++...++.+.-+|..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~ 178 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEV---AWQTKVAGEALSRPVVS-DG-LVLVHTSNGMLQALNES 178 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCC---cccccCCCceecCCEEE-CC-EEEEECCCCEEEEEEcc
Confidence 45666777888988888776621 111111122211 1111 33 55555556767767765
No 414
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=44 Score=34.05 Aligned_cols=65 Identities=6% Similarity=0.085 Sum_probs=41.8
Q ss_pred eEEcCCCCEEEEEeCC----------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 105 VSWHQHKHIVAFISGS----------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 105 l~~sp~g~~lat~~~d----------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
++..|-|--||+.-.+ -.|+|+++... ....+...|. .+-.+.|+.+. .+|++..+|++++|++.
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~--lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ--LLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecccc--chHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecc
Confidence 3444555555554333 34666665543 2323333444 78889999777 89999999999999985
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.26 E-value=8.6 Score=40.67 Aligned_cols=112 Identities=13% Similarity=0.248 Sum_probs=57.5
Q ss_pred CeEEEEEccCCCEEE--EEecCCcEEEEEcCCCCccccc------------cCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302 238 GLSILKWSPTGDYFF--AAKFDGTFYLWETNTWTSEPWS------------STSGFVTGATWDPEGRMILLAFAGSLTLG 303 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~--~~~~dg~v~iwd~~~~~~~~~~------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~ 303 (427)
.+..+...+|+...+ ..+.+-.|..||+++.....+. .......++.|.|.=..-...+..+..|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 445555667776555 2333446899999875532211 12234456777774222111122222222
Q ss_pred eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302 304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 367 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~ 367 (427)
+..+..... ....+.....+++++|+|.|+.|++ |-+. |++.-|.-
T Consensus 182 V~~~~~~~~------------~v~s~p~t~~~Tav~WSprGKQl~i---G~nn---Gt~vQy~P 227 (1405)
T KOG3630|consen 182 VKSTKQLAQ------------NVTSFPVTNSQTAVLWSPRGKQLFI---GRNN---GTEVQYEP 227 (1405)
T ss_pred hhhhhhhhh------------hhcccCcccceeeEEeccccceeeE---ecCC---CeEEEeec
Confidence 222221100 0111222337899999999999998 4443 66777664
No 416
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.56 E-value=27 Score=30.64 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=62.2
Q ss_pred cCCC-EEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccc
Q 014302 246 PTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 324 (427)
Q Consensus 246 p~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 324 (427)
+|.+ +++.|+..+.+.-.|.++++..-..-....+.+-+.- -|.+++.++..+ .++.+.+........-..
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g-~lYfl~~~tGs~~w~f~~------ 91 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSG-GLYFLCVKTGSQIWNFVI------ 91 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccC-cEEEEEecchhheeeeee------
Confidence 4444 5558888999998898888763222122223222221 366777776555 677776665421110000
Q ss_pred cceeeccCCce-eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302 325 DIVSLTGSQGI-EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 376 (427)
Q Consensus 325 ~~~~~~~~~~i-~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~ 376 (427)
.+.| .....++++..+.. ++.| ++.+..|.++..++-..
T Consensus 92 -------~~~vk~~a~~d~~~glIyc---gshd---~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 92 -------LETVKVRAQCDFDGGLIYC---GSHD---GNFYALDPKTYGCVYKS 131 (354)
T ss_pred -------hhhhccceEEcCCCceEEE---ecCC---CcEEEecccccceEEec
Confidence 0011 22345678888866 7887 45888888877665433
No 417
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.01 E-value=35 Score=31.50 Aligned_cols=111 Identities=16% Similarity=0.247 Sum_probs=58.8
Q ss_pred CeEEEEEccCCCEEEEEecC------CcEEEEEcCCCCc-cc------c---------ccCCCCeeEEEECCCCCEEEEE
Q 014302 238 GLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTS-EP------W---------SSTSGFVTGATWDPEGRMILLA 295 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~-~~------~---------~~~~~~v~~v~~spdg~~l~~~ 295 (427)
..-++++.++|.++++.-.+ -.|+.++.. ++. .. + ........+++++|||+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34466676777777666555 667777755 322 11 1 1345678899999999977665
Q ss_pred EcCC----c--e-------eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302 296 FAGS----L--T-------LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 349 (427)
Q Consensus 296 ~~~~----~--~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~ 349 (427)
.... + . ++++.+...............+...........|..+.+-+++++|+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5432 1 1 333333322100000000011110000013347899999999998776
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.43 E-value=28 Score=33.18 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCCccccccC--C-CCeeEEEE--CCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce----
Q 014302 257 DGTFYLWETNTWTSEPWSST--S-GFVTGATW--DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV---- 327 (427)
Q Consensus 257 dg~v~iwd~~~~~~~~~~~~--~-~~v~~v~~--spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---- 327 (427)
..++.+||+.+.+..+.... . .....+.| .|+..+=++++.-.+.|+.|.-.+. ..+... ..++++...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-g~W~a~-kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-GEWAAE-KVIDIPAKKVEGW 298 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-TEEEEE-EEEEE--EE--SS
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-CCeeee-EEEECCCcccCcc
Confidence 35799999999887655522 2 23445555 4556665555555555655544221 111111 111111110
Q ss_pred ee--------ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302 328 SL--------TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 372 (427)
Q Consensus 328 ~~--------~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~ 372 (427)
.+ ....-|+++..|.|.++|.++.=.. |.|+.||+.....
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-----GdvrqYDISDP~~ 346 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-----GDVRQYDISDPFN 346 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTT-----TEEEEEE-SSTTS
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccC-----CcEEEEecCCCCC
Confidence 00 1123589999999999999863333 5699999987443
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=83.32 E-value=39 Score=31.39 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=54.5
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---cccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 312 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~ 312 (427)
.++.+.+.++++.++++. .|.+++=....+.. .... .....+.++.+.++++.++++ ..+ .+. .-.+.-.
T Consensus 216 ~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G-~v~--~S~d~G~ 290 (334)
T PRK13684 216 RLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNG-TLL--VSKDGGK 290 (334)
T ss_pred cceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCC-eEE--EeCCCCC
Confidence 566777888887666654 56554322222221 1111 123457889999988876654 333 222 1122111
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 366 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd 366 (427)
++.....+. ........+.|..+++.+|+ |.. |.|.-|+
T Consensus 291 tW~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---G~~----G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGE--------EVPSNFYKIVFLDPEKGFVL---GQR----GVLLRYV 329 (334)
T ss_pred CCeECCcCC--------CCCcceEEEEEeCCCceEEE---CCC----ceEEEec
Confidence 111000000 00124677888777788877 554 5666554
No 420
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.02 E-value=3.2 Score=24.58 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=19.2
Q ss_pred cCCCEEEEEe-cCCcEEEEEcCCCCcc
Q 014302 246 PTGDYFFAAK-FDGTFYLWETNTWTSE 271 (427)
Q Consensus 246 p~g~~l~~~~-~dg~v~iwd~~~~~~~ 271 (427)
|++++|+++. .++.|.++|..+.+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 6788888544 5788999998766553
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.63 E-value=9 Score=36.50 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=45.0
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEE---EEecc----CceEEEeeeeeeeCCC-CCCC-ceeEEeccCC-----CC
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARR----TPLISLSLIGFIRGPG-DNPK-PVAFSFHDKF-----KQ 401 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~v---wd~~~----~~~~~~~~~~~~~~~~-~~~~-~~~~~f~~~~-----~~ 401 (427)
..++.+|+++.||+ +..+ ..+.+ |+... ...+.+...|.+.... +..+ ..|+.+.... .+
T Consensus 5 ~~isls~~~d~lai---A~~~---r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~d 78 (415)
T PF14655_consen 5 CSISLSPDGDLLAI---ARGQ---RLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPD 78 (415)
T ss_pred ceEEecCCCCEEEE---EcCC---EEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCC
Confidence 35678899999999 4433 22333 54311 2345555566655432 2222 2333332111 23
Q ss_pred CceeEEEeeCceEEEEec
Q 014302 402 GPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 402 g~~l~v~~~~g~i~~~~~ 419 (427)
..+++||+++|.+.||+.
T Consensus 79 w~~I~VG~ssG~vrfyte 96 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTE 96 (415)
T ss_pred cEEEEEEecccEEEEEec
Confidence 468999999999999985
No 422
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.57 E-value=44 Score=31.48 Aligned_cols=122 Identities=20% Similarity=0.146 Sum_probs=61.0
Q ss_pred CeEEEEE--cc-CCCE-EEEEecCCcEEEEEcCCCCc-------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 238 GLSILKW--SP-TGDY-FFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 238 ~v~~~~~--sp-~g~~-l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
.++.+|+ +| +|++ +++...+|.+..|.+..... .+.......+..+.......+|+++ .++.-||.+.
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg-EE~~GIW~y~ 235 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG-EEDVGIWRYD 235 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE-ETTTEEEEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe-cCccEEEEEe
Confidence 4555554 43 4654 44788899998888753221 1111445578888888777788775 4443455444
Q ss_pred eCCCCCCccccccccccccceeeccCCceeEEEEC--CCC-CEEEEEEecCCCcceeEEEEEEeccC
Q 014302 307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD--ASG-ERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s--p~g-~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
....... .+..... .........|..|+.- .+| .||++++.|. ++..||+.+..
T Consensus 236 Aep~~~~-~~~~v~~----~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~-----~sf~Vy~r~~~ 292 (381)
T PF02333_consen 236 AEPEGGN-DRTLVAS----ADGDGLVADVEGLALYYGSDGKGYLIVSSQGD-----NSFAVYDREGP 292 (381)
T ss_dssp SSCCC-S---EEEEE----BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG-----TEEEEEESSTT
T ss_pred cCCCCCC-cceeeec----ccccccccCccceEEEecCCCCeEEEEEcCCC-----CeEEEEecCCC
Confidence 3322111 1111100 0000012356677663 444 4777766555 45999998753
No 423
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.24 E-value=31 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=33.3
Q ss_pred CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe
Q 014302 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG 162 (427)
Q Consensus 112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g 162 (427)
+.|..+.....|.+|++.....+. .....--+.|..+.++..|+++++.=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~-~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPL-LCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCce-eEEEcchhheeEEEeccccceEEEEE
Confidence 445444667889999999543333 33344457899999999995555543
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.93 E-value=46 Score=31.33 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=31.6
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--C-cceeeccC-------CcCCeeEEEEccCCCceEEEec
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--K-DACILTSD-------SQRDVKVLEWRPNGGRSLSVGC 163 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~-~~~~~~~~-------~~~~v~~l~~sp~~~~~la~g~ 163 (427)
.+.|++.++| +++ +......++.+.+... . ....+..+ +......++|.|||..+++.|.
T Consensus 74 p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 74 VTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred ccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 4778899999 444 4344333343443321 0 11111111 1344778999999954455554
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.59 E-value=34 Score=29.59 Aligned_cols=88 Identities=14% Similarity=0.292 Sum_probs=49.2
Q ss_pred CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcc
Q 014302 279 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 358 (427)
Q Consensus 279 ~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~ 358 (427)
--..++|+.+.+.+.+..+.+-.+..|+.......+.......++...... .+...-.++.+.+|.+.++++.+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~-e~~~PDGm~ID~eG~L~Va~~ng----- 232 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF-ESLEPDGMTIDTEGNLYVATFNG----- 232 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc-CCCCCCcceEccCCcEEEEEecC-----
Confidence 345788998888888766555344334422221111111111122221111 11133456678889988888877
Q ss_pred eeEEEEEEeccCceE
Q 014302 359 KGLIAIYDARRTPLI 373 (427)
Q Consensus 359 ~g~i~vwd~~~~~~~ 373 (427)
++|.-.|..+++++
T Consensus 233 -~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 233 -GTVQKVDPTTGKIL 246 (310)
T ss_pred -cEEEEECCCCCcEE
Confidence 45999999998875
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.51 E-value=35 Score=34.88 Aligned_cols=75 Identities=8% Similarity=0.066 Sum_probs=48.0
Q ss_pred CCCceeeeEEcC--CCCEEEEEeCCCeEEEEEccCC----------CCc-------ceeeccCCcCCeeEEEEc--cCCC
Q 014302 98 PEVDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDS----------GKD-------ACILTSDSQRDVKVLEWR--PNGG 156 (427)
Q Consensus 98 ~~~~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~----------~~~-------~~~~~~~~~~~v~~l~~s--p~~~ 156 (427)
..|.|+-|...- +...|+.+..||.|.+|..+.- ... .+.........+++++++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~- 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS- 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-
Confidence 345666666544 3458899999999999976321 000 011222244578888887 555
Q ss_pred ceEEEecC-CeEEEEecc
Q 014302 157 RSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 157 ~~la~g~~-~~i~iw~~~ 173 (427)
++||++.. ..|.||-..
T Consensus 178 rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred eEEEEecCCceEEEEEEe
Confidence 78888876 778887765
No 427
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.93 E-value=15 Score=35.56 Aligned_cols=69 Identities=10% Similarity=0.230 Sum_probs=40.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee-eeeeeCCCCCCCceeEEeccCC---CCCceeEEEe
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-IGFIRGPGDNPKPVAFSFHDKF---KQGPLLSVCW 409 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~---~~g~~l~v~~ 409 (427)
..+.|+|.|||++|++- .. . |.|++++-.++....+.. ...+.... ....+.|++||+| .....|=+.+
T Consensus 31 ~Pw~maflPDG~llVtE-R~--~---G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTE-RA--T---GKILRVNPETGEVKVVFTLPEIVNDAQ-HNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CceEEEEcCCCeEEEEE-ec--C---CEEEEEeCCCCceeeeecCCceeccCC-CCceeeEEECCCccccCCCcEEEEEE
Confidence 56899999999888773 21 1 568888765543221111 11222112 3457899999999 5444444544
No 428
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=80.76 E-value=41 Score=29.95 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=59.8
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc---------------cccCCCCeeEEE---ECCCCCEEEEEEcCCc
Q 014302 239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---------------WSSTSGFVTGAT---WDPEGRMILLAFAGSL 300 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---------------~~~~~~~v~~v~---~spdg~~l~~~~~~~~ 300 (427)
|..+..-|+-+.|++-+ |+.++++++....... .......+..++ -...+..|+++...
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-- 114 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-- 114 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC--
Confidence 77777777777666554 5999999987665432 112333444444 22234455554433
Q ss_pred eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
.+.++........+. .....+.....+.+++|. ++.|++++ .. ...+.|+.++...
T Consensus 115 ~i~i~~~~~~~~~f~--------~~~ke~~lp~~~~~i~~~--~~~i~v~~--~~-----~f~~idl~~~~~~ 170 (275)
T PF00780_consen 115 KILIYEWNDPRNSFS--------KLLKEISLPDPPSSIAFL--GNKICVGT--SK-----GFYLIDLNTGSPS 170 (275)
T ss_pred EEEEEEEECCccccc--------ceeEEEEcCCCcEEEEEe--CCEEEEEe--CC-----ceEEEecCCCCce
Confidence 444443333211110 112223333478888888 55666632 21 2667777655443
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.79 E-value=77 Score=32.56 Aligned_cols=162 Identities=12% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCEEEEEecCCcEEEEEcCCCCccc-------cc----------------cCCCCeeEEEECC-CCCEEEEEEcCCceee
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTSEP-------WS----------------STSGFVTGATWDP-EGRMILLAFAGSLTLG 303 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~~~-------~~----------------~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~ 303 (427)
..+|+++. .+.|.||+.+...... +. .....|..+.... .+.-+++.+.++|.+.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 7899999876433211 00 0011233332222 2344444566777887
Q ss_pred eeeeCCCC-----C--CccccccccccccceeeccCCceeEEEEC--CCCCEEEEEEecCCCcceeEEEEEEecc--Cce
Q 014302 304 SIHFASKP-----P--SLDAHLLPVDLPDIVSLTGSQGIEKIAWD--ASGERLAVSYKGGDDIYKGLIAIYDARR--TPL 372 (427)
Q Consensus 304 ~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~s--p~g~~La~~~~~~~d~~~g~i~vwd~~~--~~~ 372 (427)
.|....-. . ..+.........-...+..+..+++++++ ...++||++ ++. ..|.||-... .+.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVS---sNs---~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVS---SNS---QEVTVFAFALVDERF 201 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEe---cCC---ceEEEEEEecccccc
Confidence 77654310 0 00000000111111233445588999998 888889885 322 3477765533 111
Q ss_pred EEEeeeeeeeCCCCCCCceeEEeccCCCCCc---eeEEEeeCceEEEEecccc
Q 014302 373 ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP---LLSVCWSSGFCCTYPLIFR 422 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~---~l~v~~~~g~i~~~~~~~~ 422 (427)
... .......+..+|+|.+...++. .|+.+.-.|.+-+|.|.|.
T Consensus 202 ~~~------~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~~~ 248 (717)
T PF08728_consen 202 YHV------PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIKFK 248 (717)
T ss_pred ccc------cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEEEe
Confidence 100 0112334566899999864433 6777778999999998443
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=79.14 E-value=23 Score=33.81 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=27.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS 131 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~ 131 (427)
.+.+++.+|++++.|+...=|.|.|+|+...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 6889999999998888766699999998876
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.52 E-value=30 Score=27.06 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=48.2
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEcc----CCCceEEEecCCeEEEEecc
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp----~~~~~la~g~~~~i~iw~~~ 173 (427)
..-.|....+.|+.++.-+.|.|++...... ......-.....|++|+-.+ ++...|..|....+..||+.
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 3446777777899999999999987654411 11111122345677776554 33468999999999999997
No 432
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=77.95 E-value=7.6 Score=33.20 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCE--EEEEEcCCceeeeeeeCC
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRM--ILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~--l~~~~~~~~~i~~~~~~~ 309 (427)
+..+++|+.+|.|++|....... ..+......+... -|.++- +.+.+..++.++.+++.-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec--cccccccceeEEeccCCceeeecccc
Confidence 45788999999999998763221 1222222222222 233333 555556666777776654
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.87 E-value=9.2 Score=39.42 Aligned_cols=104 Identities=21% Similarity=0.326 Sum_probs=58.9
Q ss_pred CeEEEEEccCCCCc-----ceeeccCCcCCeeEEEEcc---CCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302 121 TQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRP---NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA 191 (427)
Q Consensus 121 ~~v~vwd~~~~~~~-----~~~~~~~~~~~v~~l~~sp---~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~ 191 (427)
|...||+++.-..+ .+.....-...+.-+.|.| +. -.+..+.+ +.+++..++. .
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~r---------a------- 215 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINR---------A------- 215 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc-ceeeeccCCCceeEeeech---------H-------
Confidence 56778988754111 1111222333456667775 33 45556654 6677655540 0
Q ss_pred ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcC
Q 014302 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 266 (427)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 266 (427)
....++.| ...++.+++-..|-+.. -..||||..++..+.||.++.|.+.
T Consensus 216 ----------~~~l~rsH-s~~~~d~a~~~~g~~~l--------------~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 216 ----------LRSLFRSH-SQRVTDMAFFAEGVLKL--------------ASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ----------HHHHHHhc-CCCcccHHHHhhchhhh--------------eeeCCCCcEEEEeecCCccceeeee
Confidence 12445554 55555555543332211 1189999999999999999998764
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.49 E-value=69 Score=30.71 Aligned_cols=101 Identities=9% Similarity=0.079 Sum_probs=64.8
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-----ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
..++|.++.||+|++.||+--.+..|.+++....+.... ......|...+|+.+ .-+|.....+-.++.+.--.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pek 143 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEK 143 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhh
Confidence 356899999999999999999999999999854443211 134456899999875 56666554442333322111
Q ss_pred CCC-CccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302 310 KPP-SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 350 (427)
Q Consensus 310 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~ 350 (427)
... ..+. +...|+-..|+++-+.+..+
T Consensus 144 rslRlVks--------------~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 144 RSLRLVKS--------------HNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhh--------------cccCccEEEEccccceEeee
Confidence 110 1111 22377888899988776554
No 435
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=76.49 E-value=6.4 Score=39.90 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=59.6
Q ss_pred eeEEcCCCCEEEEEeCCC-----eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302 104 GVSWHQHKHIVAFISGST-----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (427)
Q Consensus 104 ~l~~sp~g~~lat~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~ 178 (427)
.++|-|+|..+|+-..|| .|..+.-+...-....+..+....+..++|+-.. .+++++..+.+++|...
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s-~vlav~~~n~~~lwttk----- 324 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS-TVLAVAEGNLLKLWTTK----- 324 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH-HHHHHhhcceEEEEEcc-----
Confidence 479999999999976443 3444332222111122223445567888998777 78888888999999876
Q ss_pred cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC
Q 014302 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 224 (427)
+-.|+....+. ...+.-+.|+|..+
T Consensus 325 ------------------NyhWYLK~e~~---ip~~s~vkwhpe~~ 349 (1243)
T COG5290 325 ------------------NYHWYLKVERQ---IPGISYVKWHPEEK 349 (1243)
T ss_pred ------------------ceEEEEEEeec---CCCcceeeeccccC
Confidence 44566554333 33455678888654
No 436
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.14 E-value=8 Score=27.85 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred ecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC
Q 014302 255 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 255 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~ 299 (427)
..+|.+.-||..+++...+...-.....|++++|+++++++-...
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 445778888888887655554555778999999999998764433
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.45 E-value=20 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=24.4
Q ss_pred CceeEEeccCC---CCCceeEEEeeCceEEEEecc
Q 014302 389 KPVAFSFHDKF---KQGPLLSVCWSSGFCCTYPLI 420 (427)
Q Consensus 389 ~~~~~~f~~~~---~~g~~l~v~~~~g~i~~~~~~ 420 (427)
.++.++|.|.- ..+-+|||.+++|++.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 46678888842 234589999999999999744
No 438
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=75.00 E-value=1.2e+02 Score=32.20 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=94.7
Q ss_pred ceeeeEEcCC-CCEEEEEe----------CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302 101 DLQGVSWHQH-KHIVAFIS----------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169 (427)
Q Consensus 101 ~V~~l~~sp~-g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i 169 (427)
.|.++.|..| +.++++|+ ..|.|.|+.+...++-.......-++.|.++.-- +| .+.+|-...|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng--kllA~In~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NG--KLLAGINQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CC--eEEEecCcEEEE
Confidence 6777779888 66888884 2478888888773222223223344556555433 33 444456677999
Q ss_pred EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC
Q 014302 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD 249 (427)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~ 249 (427)
|++... +.++ .. ..+..++..+...-.|.
T Consensus 853 ye~t~~-------------------------~eLr-~e-------------------------~~~~~~~~aL~l~v~gd 881 (1096)
T KOG1897|consen 853 YEWTTE-------------------------RELR-IE-------------------------CNISNPIIALDLQVKGD 881 (1096)
T ss_pred EEcccc-------------------------ceeh-hh-------------------------hcccCCeEEEEEEecCc
Confidence 888610 1111 00 11344677778888888
Q ss_pred EEEEEecCCcEEEEEcCCCC--cccc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302 250 YFFAAKFDGTFYLWETNTWT--SEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 310 (427)
Q Consensus 250 ~l~~~~~dg~v~iwd~~~~~--~~~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~ 310 (427)
.+++|.--+++.+.-.+..+ ...+ .-+..+..++.+-.+..++ ++...+.++.+...+.
T Consensus 882 eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl--gae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 882 EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL--GAENSGNLFTVRKDSD 944 (1096)
T ss_pred EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE--eecccccEEEEEecCC
Confidence 99998877777765554444 3222 2566778888887766665 4566778888877754
No 439
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.57 E-value=61 Score=28.16 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=42.3
Q ss_pred eEEEECCCCCEEEEEEecCCCcceeEEEEEE--eccCceEEEeeeeeeeC----CCCCCCceeEEeccCCCCCceeEEEe
Q 014302 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYD--ARRTPLISLSLIGFIRG----PGDNPKPVAFSFHDKFKQGPLLSVCW 409 (427)
Q Consensus 336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f~~~~~~g~~l~v~~ 409 (427)
+.++|+.+.+.+... ++.+ -.|.-|| ..++.+.. +...+.- +.+...|=.++.. ..|.|...+|
T Consensus 161 Ngl~Wd~d~K~fY~i--Dsln---~~V~a~dyd~~tG~~sn--r~~i~dlrk~~~~e~~~PDGm~ID---~eG~L~Va~~ 230 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYI--DSLN---YEVDAYDYDCPTGDLSN--RKVIFDLRKSQPFESLEPDGMTID---TEGNLYVATF 230 (310)
T ss_pred ccccccccCcEEEEE--ccCc---eEEeeeecCCCcccccC--cceeEEeccCCCcCCCCCCcceEc---cCCcEEEEEe
Confidence 678999888877665 6655 5577788 55544321 1111111 1122112223232 2588899999
Q ss_pred eCceEEEEec
Q 014302 410 SSGFCCTYPL 419 (427)
Q Consensus 410 ~~g~i~~~~~ 419 (427)
+.|+|+-++.
T Consensus 231 ng~~V~~~dp 240 (310)
T KOG4499|consen 231 NGGTVQKVDP 240 (310)
T ss_pred cCcEEEEECC
Confidence 9999987763
No 440
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.51 E-value=54 Score=34.43 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=42.2
Q ss_pred EEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCC-----ceeeeeeeCCC
Q 014302 251 FFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSIHFASK 310 (427)
Q Consensus 251 l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~-----~~i~~~~~~~~ 310 (427)
.+.....+.+.+-|......... ..+...+.+..|||||+.|+++.+-. ..|++-++...
T Consensus 322 Afv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 322 AFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred EEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 33443345888888887777666 57788999999999999999933322 24666666653
No 441
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=72.12 E-value=79 Score=28.86 Aligned_cols=52 Identities=15% Similarity=0.395 Sum_probs=40.2
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA 297 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~ 297 (427)
.|. +|++-++-+..|.|.-+|.++++......-.+....++|. |++++++.+
T Consensus 209 RWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 209 RWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred cEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 344 6777777778899999998888876666666778889998 888887653
No 442
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.87 E-value=12 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=19.9
Q ss_pred CCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302 342 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 374 (427)
Q Consensus 342 p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~ 374 (427)
|++++|.++..++ +.|.++|..++..+.
T Consensus 1 pd~~~lyv~~~~~-----~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGS-----NTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCC-----CEEEEEECCCCeEEE
Confidence 6788888754333 569999998776653
No 443
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=69.41 E-value=61 Score=32.67 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=42.8
Q ss_pred eEEEEEccCCCEEEEE-----ecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 239 LSILKWSPTGDYFFAA-----KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 239 v~~~~~sp~g~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
+-.++.|||++++|-+ +..=++++-|+.+++...-. ..+...+++|.+|++.+++...+..
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~-i~~~~~~~~Wa~d~~~lfYt~~d~~ 196 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE-ITNTSGSFAWAADGKTLFYTRLDEN 196 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh-hcccccceEEecCCCeEEEEEEcCC
Confidence 4456788999988833 22335889999887753322 3345678999999999998876663
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.83 E-value=1.6e+02 Score=30.30 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=37.4
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCC
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGR 290 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~ 290 (427)
..+..+..||+.++|+.=...|.|++-++...++. .-......-..++|.-+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda 272 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDA 272 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCc
Confidence 45777889999999998788999999887765542 1112333334788876553
No 445
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=66.80 E-value=1.3e+02 Score=30.74 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=38.6
Q ss_pred CCceeeeEEcCCCCEEEEEeCCC--eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEE
Q 014302 99 EVDLQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS 160 (427)
Q Consensus 99 ~~~V~~l~~sp~g~~lat~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 160 (427)
+..+..+.|+|+|..++..+.++ ..++|.+...+ ....+...+....|+|++..++.
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g-----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG-----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC-----ceeeeecccccceeCCCCCeEEE
Confidence 33678889999999998876333 34556554441 23345567888999999965554
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.93 E-value=1.3e+02 Score=28.69 Aligned_cols=98 Identities=9% Similarity=0.096 Sum_probs=50.2
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc---ccc-----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWS-----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~-----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
.+..+.|.+++..++++ .+|.+..- ...++.. .+. .....+.++.|.+++..++++ ..+ .+... .+
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G-~v~~s--~D 355 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSG-ILLRS--TD 355 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCC-cEEEe--CC
Confidence 45677778888776655 35554332 2222210 121 123458899999988877764 333 22222 22
Q ss_pred CCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302 310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 349 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~ 349 (427)
.-.++..... .-........+.|.++++.+++
T Consensus 356 ~G~tW~~~~~--------~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 356 GGKSWKRDKG--------ADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CCcceeEccc--------cCCCCcceeEEEEcCCCceEEE
Confidence 1111110000 0001126689999888888877
No 447
>PRK13615 lipoprotein LpqB; Provisional
Probab=64.13 E-value=1.6e+02 Score=29.49 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=77.9
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302 240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 319 (427)
Q Consensus 240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (427)
.+++.++++..++....++.++++.... ..........+....|.++| .+=+...+. ....+. ....... +..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~--~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-~~~l~~-~~~~G~~--~~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR--DAVLLDTRPGLVAPSLDAQG-YVWSTPASD-PRGLVA-WGPDGVG--HPV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC--cceeeccCCccccCcCcCCC-CEEEEeCCC-ceEEEE-ecCCCce--EEe
Confidence 6778999999988766677777775541 11111223457778888877 333332222 222222 2111100 111
Q ss_pred ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc-Cc-eEEE--eeeeeeeCCCCCCCceeEEe
Q 014302 320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-TP-LISL--SLIGFIRGPGDNPKPVAFSF 395 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~-~~-~~~~--~~~~~~~~~~~~~~~~~~~f 395 (427)
.++. ..++.|..+..|+||-.+|+....... ++|.|--+.. +. ...+ .|.... +. ...+..++|
T Consensus 410 ~v~~------~~~~~I~~lrvSrDG~R~Avi~~~~g~---~~V~va~V~R~~~~P~~L~~~p~~l~--~~-l~~v~sl~W 477 (557)
T PRK13615 410 AVSW------TATGRVVSLEVARDGARVLVQLETGAG---PQLLVASIVRDGGVPTSLTTTPLELL--AS-PGTPLDATW 477 (557)
T ss_pred eccc------cCCCeeEEEEeCCCccEEEEEEecCCC---CEEEEEEEEeCCCcceEeeeccEEcc--cC-cCcceeeEE
Confidence 1111 123479999999999999997554433 5577755433 21 1222 122111 11 225778888
Q ss_pred ccCCCCCceeEEE
Q 014302 396 HDKFKQGPLLSVC 408 (427)
Q Consensus 396 ~~~~~~g~~l~v~ 408 (427)
..+ +.|..++
T Consensus 478 ~~~---~~laVl~ 487 (557)
T PRK13615 478 VDE---LDVATLT 487 (557)
T ss_pred cCC---CEEEEEe
Confidence 765 4454444
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=62.87 E-value=2.2e+02 Score=30.60 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=36.5
Q ss_pred EEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
.+..|-..++++| ....+++||+...+..... .....|..++|. +..++++...++
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeS 997 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQES 997 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccce
Confidence 4566666666654 4688999999776653222 235667777775 567777766663
No 449
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=61.41 E-value=1.1e+02 Score=26.78 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=57.8
Q ss_pred EccCCCEEEEEec-C--CcEEEEEcCC-CCcccc------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302 244 WSPTGDYFFAAKF-D--GTFYLWETNT-WTSEPW------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 313 (427)
Q Consensus 244 ~sp~g~~l~~~~~-d--g~v~iwd~~~-~~~~~~------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~ 313 (427)
+-+||++|.+|+. + ..+++++... .....+ .....+-.++.--|||+.|+.++.... .+.++.....
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~---t~E~~P~~~~ 150 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNP---TYEFWPPKGP 150 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCC---cccccCCccC
Confidence 4567777776654 2 3477777544 111111 133344555666689999998876632 2333332110
Q ss_pred ccccccccccc-cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 314 LDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 314 ~~~~~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
......+.+. .........----+-..|||+.++. +..+ -.|||..++..+
T Consensus 151 -~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~---an~~-----s~i~d~~~n~v~ 202 (243)
T PF07250_consen 151 -GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF---ANRG-----SIIYDYKTNTVV 202 (243)
T ss_pred -CCCceeeecchhhhccCccccCceEEEcCCCCEEEE---EcCC-----cEEEeCCCCeEE
Confidence 0000000000 0000000001123455699999987 4443 558899887664
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=61.19 E-value=1.6e+02 Score=28.23 Aligned_cols=155 Identities=17% Similarity=0.293 Sum_probs=77.7
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCC--CCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 315 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~ 315 (427)
....+..+++|.+++.+.....++-||--. ++... ......+.++.|.++|..++++ ..+ .+.. ..+.-....
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G-~l~~--S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGG-GLYV--SKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCc-eEEE--ecCCCCccc
Confidence 344566778988888776544444455321 12222 2345568899999999988765 333 2221 111100000
Q ss_pred ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302 316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 395 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 395 (427)
. .++.+.........+.++.|.+++..+++ |.. |.+... ...++..+..+. ......+-+.+.|
T Consensus 315 ~----~~f~~~~~~~~~~~l~~v~~~~d~~~~a~---G~~----G~v~~s-~D~G~tW~~~~~----~~~~~~~ly~v~f 378 (398)
T PLN00033 315 D----FDFEEADIKSRGFGILDVGYRSKKEAWAA---GGS----GILLRS-TDGGKSWKRDKG----ADNIAANLYSVKF 378 (398)
T ss_pred c----cceeecccCCCCcceEEEEEcCCCcEEEE---ECC----CcEEEe-CCCCcceeEccc----cCCCCcceeEEEE
Confidence 0 00000000001125889999999988888 443 334443 333333222111 1112233456777
Q ss_pred ccCCCCCceeEEEeeCceEEEE
Q 014302 396 HDKFKQGPLLSVCWSSGFCCTY 417 (427)
Q Consensus 396 ~~~~~~g~~l~v~~~~g~i~~~ 417 (427)
.+. +...++| .+|.|.-|
T Consensus 379 ~~~---~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 379 FDD---KKGFVLG-NDGVLLRY 396 (398)
T ss_pred cCC---CceEEEe-CCcEEEEe
Confidence 554 4456666 78877655
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=59.66 E-value=25 Score=33.96 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=45.2
Q ss_pred CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
-++|+|+..|-|++||.-.. .......+....|..+..+.+|+ .+.+.|...+.+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~Gk-~ilaTCk~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANGK-HILATCKNYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCCc-EEEEeecceEEEEecc
Confidence 38999999999999886544 34455566778899999999995 5555567788888876
No 452
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=59.07 E-value=26 Score=18.68 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEE
Q 014302 103 QGVSWHQHKHIVAFISGSTQVIVR 126 (427)
Q Consensus 103 ~~l~~sp~g~~lat~~~d~~v~vw 126 (427)
..++.+++|+.+++=+.+..|+++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 567777777777776666776653
No 453
>PRK13613 lipoprotein LpqB; Provisional
Probab=58.79 E-value=2.1e+02 Score=29.05 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=79.7
Q ss_pred CeEEEEEccCCCEEEEEecCC-cEEEEEcCCCCc----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302 238 GLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 312 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~ 312 (427)
.+.+++.|+++..+|....++ .+++..+..... .........+....|.++|..- +...+...-..+.+....
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~vW-tvd~~~~~~~vl~v~~~~- 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGDLW-VVDRDPADPRLLWLLQGD- 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCCCEE-EecCCCCCceEEEEEcCC-
Confidence 567888999999888555544 466654432222 1111223456777787777433 221111110112111111
Q ss_pred CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc---CceEEEeeeeeeeCCCCCCC
Q 014302 313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR---TPLISLSLIGFIRGPGDNPK 389 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~ 389 (427)
+....++.+ .+. +..|..+..|+||-.+|+....... ++|+|=-+.. +. +.+.. .+.-......
T Consensus 442 ---G~~~~V~~~---~l~-g~~I~~lrvSrDG~RvAvv~~~~g~---~~v~va~V~R~~~G~-~~l~~--~~~l~~~l~~ 508 (599)
T PRK13613 442 ---GEPVEVRTP---ELD-GHRVVAVRVARDGVRVALIVEKDGR---RSLQIGRIVRDAKAV-VSVEE--FRSLAPELED 508 (599)
T ss_pred ---CcEEEeecc---ccC-CCEeEEEEECCCccEEEEEEecCCC---cEEEEEEEEeCCCCc-EEeec--cEEeccCCCc
Confidence 011111111 111 2379999999999999986543333 4576655532 33 32221 1111111223
Q ss_pred ceeEEeccCCCCCceeEEEeeCc-eEEEEec
Q 014302 390 PVAFSFHDKFKQGPLLSVCWSSG-FCCTYPL 419 (427)
Q Consensus 390 ~~~~~f~~~~~~g~~l~v~~~~g-~i~~~~~ 419 (427)
+..++|... +.|+.++.+.+ ...+|-+
T Consensus 509 v~~~~W~~~---~sL~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 509 VTDMSWAGD---SQLVVLGREEGGVQQARYV 536 (599)
T ss_pred cceeEEcCC---CEEEEEeccCCCCcceEEE
Confidence 668888764 44444465433 4444443
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=58.23 E-value=89 Score=24.50 Aligned_cols=110 Identities=12% Similarity=0.143 Sum_probs=60.9
Q ss_pred EEEccCCCEEEEEecCCcEEEEEcCCCCc--------cccccCCCCeeEEEECC-----CCCEEEEEEcCCceeeeeeeC
Q 014302 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTS--------EPWSSTSGFVTGATWDP-----EGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~v~~v~~sp-----dg~~l~~~~~~~~~i~~~~~~ 308 (427)
-.|......|+.++..|+|.|++...... ..+......|++++-.+ +...|++++.. .+..+++.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t--~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT--SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc--eEEEEEcc
Confidence 45666667888888899999998764432 23335566677765433 23456655433 44455555
Q ss_pred CCCCCccccccccccccceeeccCCceeEEEEC---C-CCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD---A-SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s---p-~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
+....+ .......|+++.+- . +..++++ |++ ..|.-||.+..+.+
T Consensus 82 ~N~d~F-------------yke~~DGvn~i~~g~~~~~~~~l~iv---GGn----csi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDLF-------------YKEVPDGVNAIVIGKLGDIPSPLVIV---GGN----CSIQGFDYEGNEIF 130 (136)
T ss_pred cCchhh-------------hhhCccceeEEEEEecCCCCCcEEEE---Cce----EEEEEeCCCCcEEE
Confidence 432111 11112356666663 2 3344444 655 55777777665544
No 455
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=56.49 E-value=34 Score=33.19 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.6
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302 247 TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG 298 (427)
Q Consensus 247 ~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~ 298 (427)
.+-++|+++..|.|++||.-.... ..+.+....|..+..+.+|++++++|..
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 345899999999999999644433 3344777889999999999999987754
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=55.66 E-value=1.2e+02 Score=29.15 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=23.4
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 370 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~ 370 (427)
.+.-+++||.+.+|++- .. |.|+++.+++.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e---~~----gki~~~~l~Nr 388 (733)
T COG4590 359 APQLVAMSPNQAYLLSE---DQ----GKIRLAQLENR 388 (733)
T ss_pred CcceeeeCcccchheee---cC----CceEEEEecCC
Confidence 56788999999999882 22 56999998764
No 457
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=54.37 E-value=1.9e+02 Score=27.14 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=40.8
Q ss_pred EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302 253 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 309 (427)
Q Consensus 253 ~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~ 309 (427)
.+..+|.+.-||..+.....+...-.....++.|||+.+++++-..-..+..+.+..
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g 250 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG 250 (376)
T ss_pred cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecC
Confidence 455678899999887776666666667788999999999988654443454444444
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.79 E-value=32 Score=34.96 Aligned_cols=31 Identities=6% Similarity=0.073 Sum_probs=27.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS 131 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~ 131 (427)
-+++++-+|.|+-++.++.||.+++|++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 4678888999999999999999999998765
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=51.48 E-value=17 Score=37.58 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=43.2
Q ss_pred ceeeeEEcC---CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEE-----------ccCCCceEEEe-cCC
Q 014302 101 DLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-----------RPNGGRSLSVG-CKG 165 (427)
Q Consensus 101 ~V~~l~~sp---~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~-----------sp~~~~~la~g-~~~ 165 (427)
.+.-+.|.| +.-++..+-.+++++|-.++... . .+..+|...+.+++| |||| ..++.+ .||
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--R-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDG 257 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHH--H-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCC
Confidence 445566665 45577788888999997776652 2 333347766666655 5777 444443 457
Q ss_pred eEEEEecc
Q 014302 166 GICIWAPS 173 (427)
Q Consensus 166 ~i~iw~~~ 173 (427)
.+..|.+.
T Consensus 258 ~v~f~Qiy 265 (1283)
T KOG1916|consen 258 SVGFYQIY 265 (1283)
T ss_pred ccceeeee
Confidence 67766654
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=50.93 E-value=26 Score=35.12 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=24.8
Q ss_pred eEEEEEcc----CCCEEEEEecCCcEEEEEcCCCCc
Q 014302 239 LSILKWSP----TGDYFFAAKFDGTFYLWETNTWTS 270 (427)
Q Consensus 239 v~~~~~sp----~g~~l~~~~~dg~v~iwd~~~~~~ 270 (427)
...++++. +..+|++-+.|+.+|+||+.++++
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 34455555 667888999999999999999887
No 461
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=50.47 E-value=2.3e+02 Score=26.89 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=68.0
Q ss_pred CCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 327 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (427)
+..++.++.+|.+..+|..+++.. +.........+.. ++..++++. .++.+..++..+..........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~-------- 323 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIV-WKREYGSVNDFAV--DGGRIYLVD-QNDRVYALDTRGGVELWSQSDL-------- 323 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEE-EeecCCCccCcEE--ECCEEEEEc-CCCeEEEEECCCCcEEEccccc--------
Confidence 456667777899999998887642 2111111112222 344555443 4446777766543211100000
Q ss_pred eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302 328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 407 (427)
Q Consensus 328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v 407 (427)
......+... .+.+|.+ ++.+ |.|+++|..+++.+.....+ +..... .|-.. +..|-|
T Consensus 324 ---~~~~~~sp~v--~~g~l~v---~~~~---G~l~~ld~~tG~~~~~~~~~---~~~~~s-------~P~~~-~~~l~v 381 (394)
T PRK11138 324 ---LHRLLTAPVL--YNGYLVV---GDSE---GYLHWINREDGRFVAQQKVD---SSGFLS-------EPVVA-DDKLLI 381 (394)
T ss_pred ---CCCcccCCEE--ECCEEEE---EeCC---CEEEEEECCCCCEEEEEEcC---CCccee-------CCEEE-CCEEEE
Confidence 0001111111 1445655 4444 67999999998876332211 001111 11111 335888
Q ss_pred EeeCceEEEEec
Q 014302 408 CWSSGFCCTYPL 419 (427)
Q Consensus 408 ~~~~g~i~~~~~ 419 (427)
+..+|.+..+.+
T Consensus 382 ~t~~G~l~~~~~ 393 (394)
T PRK11138 382 QARDGTVYAITR 393 (394)
T ss_pred EeCCceEEEEeC
Confidence 889999988764
No 462
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.21 E-value=3.7e+02 Score=28.39 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=65.0
Q ss_pred CCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC
Q 014302 144 RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (427)
Q Consensus 144 ~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 222 (427)
.+..+++|+|.....||+-.. |...||++..... . ......+.-...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~--~------------------------------~~~~~~~~~~~~ 193 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPK--R------------------------------KSSNLRLSRNIS 193 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccc--c------------------------------CCcceeeccCCC
Confidence 357889999988777877766 8888999930000 0 000001111111
Q ss_pred CCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc--cCCCCeeEEEECCC
Q 014302 223 GRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STSGFVTGATWDPE 288 (427)
Q Consensus 223 g~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~--~~~~~v~~v~~spd 288 (427)
|.++..... ......+.|.++-..|++++ ...+.++|+++..... +. .....|..+.-+|+
T Consensus 194 gsi~~d~~e----~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 194 GSIIFDPEE----LSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ccccCCCcc----cCcceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 111000001 13455788998888888876 5678999998876633 22 45567888888887
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=46.57 E-value=3.8e+02 Score=28.32 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=84.8
Q ss_pred CCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCCc---cccc---cCCCC----------eeEEEECCCCCEEEEEEcCC
Q 014302 237 GGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS---EPWS---STSGF----------VTGATWDPEGRMILLAFAGS 299 (427)
Q Consensus 237 ~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~---~~~~---~~~~~----------v~~v~~spdg~~l~~~~~~~ 299 (427)
.....++|+|.. +.||+....|...|||+..... ..+. ...+. -..+.|.++-..|++.. ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 456678899854 5788999999999999922211 1110 11222 23788988877777643 33
Q ss_pred ceeeeeeeCCCCC-CccccccccccccceeeccCCceeEEEECCC--CCEEEEEEecCCCcceeEEEEEEeccC--ceEE
Q 014302 300 LTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRT--PLIS 374 (427)
Q Consensus 300 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~ 374 (427)
.+..+++..... .+ .........|.++.-+|+ +..++.+ .. .|...++... .+..
T Consensus 225 -~l~~~d~~~~~~~~~-----------l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~------eiiw~~~~~~~~~~~~ 284 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEY-----------LVTAKTWSWILDVKRSPDNPSHVFILT--SK------EIIWLDVKSSSEKLTR 284 (765)
T ss_pred -ceEEEECCCCCccch-----------hccCCChhheeeEEecCCccceEEEEe--cC------eEEEEEccCCCCCeee
Confidence 566666665421 10 000111236788887776 3333221 22 2777787663 2222
Q ss_pred EeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee--CceEEEEeccccCC
Q 014302 375 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS--SGFCCTYPLIFRSH 424 (427)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~--~g~i~~~~~~~~~~ 424 (427)
+.-..+...+.+. .+.++.... ....++++-++ +..|.+|.|.+++.
T Consensus 285 llSwkH~~d~~D~--tLrl~~~~~-~~~~~~~~lyS~~~~~v~v~~f~~~~~ 333 (765)
T PF10214_consen 285 LLSWKHFRDPEDP--TLRLSVQKV-GDTDFVVFLYSRLNPLVYVYFFSFSSG 333 (765)
T ss_pred eeecccccCCCCC--ceEEEEEEc-CCCEEEEEEEcCCCCcEEEEEEecCCC
Confidence 2223333333222 223333222 12334444444 55677777766543
No 464
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=45.17 E-value=50 Score=17.74 Aligned_cols=24 Identities=8% Similarity=0.146 Sum_probs=17.9
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEE
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVR 126 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vw 126 (427)
.|.+++..+ .++|+++..+.+|+|
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEec
Confidence 356666553 488899888999986
No 465
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=44.47 E-value=37 Score=19.76 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=16.0
Q ss_pred CCCEEEEEecCCcEEEEEcCC
Q 014302 247 TGDYFFAAKFDGTFYLWETNT 267 (427)
Q Consensus 247 ~g~~l~~~~~dg~v~iwd~~~ 267 (427)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456888899999999998763
No 466
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=44.05 E-value=58 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=23.6
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 369 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~ 369 (427)
..+.+.++|++++|.++.... +.|++|+.+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~-----~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLA-----HSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccC-----CeEEEEEecC
Confidence 457899999999999974333 4599998753
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=43.46 E-value=40 Score=33.80 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=23.9
Q ss_pred ceeeeEEcC----CCCEEEEEeCCCeEEEEEccCC
Q 014302 101 DLQGVSWHQ----HKHIVAFISGSTQVIVRDYEDS 131 (427)
Q Consensus 101 ~V~~l~~sp----~g~~lat~~~d~~v~vwd~~~~ 131 (427)
.+.+++.++ +..+|++.+.|+++|+||+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence 455666666 6679999999999999999987
No 468
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=42.33 E-value=1.1e+02 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=24.5
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302 277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 308 (427)
Q Consensus 277 ~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~ 308 (427)
-.....+.++|++++|+.+......|.+++..
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34567899999999999988777677766543
No 469
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.18 E-value=47 Score=18.05 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.5
Q ss_pred EEEEEecCCcEEEEEcCCCCc
Q 014302 250 YFFAAKFDGTFYLWETNTWTS 270 (427)
Q Consensus 250 ~l~~~~~dg~v~iwd~~~~~~ 270 (427)
.+++++.+|.+..+|.++++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 577778889999999877653
No 470
>PHA02713 hypothetical protein; Provisional
Probab=41.63 E-value=3.8e+02 Score=26.97 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=16.3
Q ss_pred CCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 343 SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
+|+..++ |+.++. .++-.||..+.+..
T Consensus 512 ~~~iyv~---Gg~~~~-~~~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMML---HCYESY-MLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEE---eeecce-eehhhcCccccccc
Confidence 4555555 554422 36778888777664
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=39.79 E-value=3.8e+02 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302 334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 373 (427)
Q Consensus 334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~ 373 (427)
.++++.+.+....|++++.-. ..|...|.+++++.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~-----s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQ-----SAVIKIDYRTGKIK 306 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT------EEEEEE-TTS-EE
T ss_pred ccCccEEeCCCCeEEEEcCcc-----eEEEEEECCCCcEE
Confidence 689999998545555533222 34777887777765
No 472
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=39.78 E-value=70 Score=33.87 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=49.3
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcce---eeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 173 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~---~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~ 173 (427)
.-.|.+....++.+++|...|.+.+++.+....... ....++...+..+.|.|+. ..++.+.. +...+|...
T Consensus 150 DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~-~~~av~~~~g~ls~wS~~ 225 (1023)
T KOG2006|consen 150 DAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQ-NGFAVTWEKGFLAFWSNQ 225 (1023)
T ss_pred cceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCcc-ceeeeeecccceEEeccc
Confidence 344566667788999999999999987765421111 1112233467788999998 78888866 788888764
No 473
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=38.14 E-value=1.1e+02 Score=31.15 Aligned_cols=63 Identities=16% Similarity=0.394 Sum_probs=36.2
Q ss_pred cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302 273 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 349 (427)
Q Consensus 273 ~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~ 349 (427)
.......+..+.|+|+|+.+++..........+.+......+. .....+....|+|+|+.++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g~~~--------------~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGGLIT--------------KTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCCcee--------------eeecccccceeCCCCCeEEE
Confidence 3456777889999999999998763332211111111100000 01125677778888887776
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.67 E-value=2.2e+02 Score=31.45 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=28.2
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCC
Q 014302 235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 268 (427)
Q Consensus 235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 268 (427)
+..+|..+.+...-..+++-+..++|++||+...
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 4568888999877777888899999999999763
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=34.92 E-value=3.7e+02 Score=24.80 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=41.6
Q ss_pred ccCCeEEEEEccCCCEEEEEec-----CC---------cEEEE--EcCCCC--ccccc---c------CCCCeeEEEECC
Q 014302 235 GFGGLSILKWSPTGDYFFAAKF-----DG---------TFYLW--ETNTWT--SEPWS---S------TSGFVTGATWDP 287 (427)
Q Consensus 235 ~~~~v~~~~~sp~g~~l~~~~~-----dg---------~v~iw--d~~~~~--~~~~~---~------~~~~v~~v~~sp 287 (427)
...+...|+++|+|+.|++..+ |+ .++++ |..+.. ...+. . ....+..+.+-+
T Consensus 145 ~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~ 224 (326)
T PF13449_consen 145 NNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP 224 (326)
T ss_pred CCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC
Confidence 3456777888888885554322 21 14554 443311 11111 1 457788999999
Q ss_pred CCCEEEEEEcC----C--ceeeeeeeCC
Q 014302 288 EGRMILLAFAG----S--LTLGSIHFAS 309 (427)
Q Consensus 288 dg~~l~~~~~~----~--~~i~~~~~~~ 309 (427)
++++|+.-... . ..|+.+++..
T Consensus 225 d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 225 DGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCcEEEEEccCCCCccceEEEEEEEccc
Confidence 99987753331 1 2455555554
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=34.66 E-value=90 Score=31.98 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=27.2
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc
Q 014302 238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 270 (427)
Q Consensus 238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 270 (427)
.++++.-+|.|..++.+..||+|++|+......
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 456777789999999999999999999765543
No 477
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=34.09 E-value=1.2e+02 Score=19.53 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=15.3
Q ss_pred eeeeEEcCCCCEEEEEeC
Q 014302 102 LQGVSWHQHKHIVAFISG 119 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~ 119 (427)
+.+++..|||+.|+.|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 578899999999999853
No 478
>PRK13615 lipoprotein LpqB; Provisional
Probab=33.87 E-value=5.1e+02 Score=26.13 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=81.2
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (427)
Q Consensus 102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~ 181 (427)
..+++.++++..+|....++.+.++..... ...... ....+..+|.++| .+-.+......++......+
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~~---~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G----- 404 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDRD---AVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDG----- 404 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCCc---ceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCC-----
Confidence 478899999999888877777777654422 222222 2346777888877 33332222223333322000
Q ss_pred ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ec--CC
Q 014302 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KF--DG 258 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~--dg 258 (427)
. ... ..+.|. ..+.|..+..|+||-.++.- .. .+
T Consensus 405 -----------------~-----------~~~-v~v~~~--------------~~~~I~~lrvSrDG~R~Avi~~~~g~~ 441 (557)
T PRK13615 405 -----------------V-----------GHP-VAVSWT--------------ATGRVVSLEVARDGARVLVQLETGAGP 441 (557)
T ss_pred -----------------c-----------eEE-eecccc--------------CCCeeEEEEeCCCccEEEEEEecCCCC
Confidence 0 000 011121 12458888888888877732 22 24
Q ss_pred cEEEEEcCC-CC-cccc-------ccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCC
Q 014302 259 TFYLWETNT-WT-SEPW-------SSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFAS 309 (427)
Q Consensus 259 ~v~iwd~~~-~~-~~~~-------~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~ 309 (427)
.|+|--+.. +. ...+ ......+.++.|..++..++.+...+ ..++.+.+..
T Consensus 442 ~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 442 QLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCC
Confidence 455533322 11 1112 12334889999999998766653222 3455555553
No 479
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=33.35 E-value=28 Score=20.77 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.9
Q ss_pred CCCceEEEEEcceeeeecccC
Q 014302 6 RPGSVTVCEINRDLITADNLS 26 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (427)
+||.-.+|+++++.++.|++.
T Consensus 3 ~pG~~V~CAVTg~~IpLd~Lr 23 (42)
T PF09866_consen 3 SPGSFVRCAVTGQPIPLDELR 23 (42)
T ss_pred cCCCEEEEEeeCCcccHHHhc
Confidence 689999999999999998865
No 480
>PRK13614 lipoprotein LpqB; Provisional
Probab=31.79 E-value=5.6e+02 Score=25.96 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=47.2
Q ss_pred CCeeEEEECCCCCEEEEEEcCCce--eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC
Q 014302 278 GFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD 355 (427)
Q Consensus 278 ~~v~~v~~spdg~~l~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~ 355 (427)
..|..+..|+||-.++.-.+.++. +++--+-... .+. |..+.....+.....+.+++|..++..++.....++
T Consensus 434 ~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~---~G~--P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~~ 508 (573)
T PRK13614 434 RTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNE---DGT--PRELTAPITLAADSDADTGAWVGDSTVVVTKASATS 508 (573)
T ss_pred CeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCC---CCC--eEEccCceecccCCCcceeEEcCCCEEEEEeccCCC
Confidence 359999999999998876644433 5443333211 011 122211111111247899999999987777533333
Q ss_pred CcceeEEEEEEec
Q 014302 356 DIYKGLIAIYDAR 368 (427)
Q Consensus 356 d~~~g~i~vwd~~ 368 (427)
+ ..+++..+.
T Consensus 509 ~---~~~~~v~v~ 518 (573)
T PRK13614 509 N---VVPELLSVD 518 (573)
T ss_pred c---ceEEEEEeC
Confidence 3 346666664
No 481
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=31.15 E-value=1.1e+02 Score=30.41 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=17.7
Q ss_pred cCCCCeeEEEECCCCCEEEEE
Q 014302 275 STSGFVTGATWDPEGRMILLA 295 (427)
Q Consensus 275 ~~~~~v~~v~~spdg~~l~~~ 295 (427)
.....++.++|+||++.|++.
T Consensus 499 P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 499 PNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCCcccccceECCCCCEEEEE
Confidence 566789999999999998764
No 482
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=31.00 E-value=6.6e+02 Score=26.53 Aligned_cols=63 Identities=10% Similarity=-0.064 Sum_probs=43.6
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc----------------c----CCCCeeEEEECCCCCEEEEEE
Q 014302 237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------------S----TSGFVTGATWDPEGRMILLAF 296 (427)
Q Consensus 237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----------------~----~~~~v~~v~~spdg~~l~~~~ 296 (427)
..|.++....-+..++..-.||+|.++|..+.+..... + ....+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777778889999999999998876431100 1 111334588999998888765
Q ss_pred cCC
Q 014302 297 AGS 299 (427)
Q Consensus 297 ~~~ 299 (427)
.++
T Consensus 340 ~~~ 342 (753)
T PF11635_consen 340 EDG 342 (753)
T ss_pred cCC
Confidence 555
No 483
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=30.63 E-value=5e+02 Score=25.05 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCEEEEEecCCcEEEEEcCCCCcc---ccc--cCCCCeeEEEEC
Q 014302 248 GDYFFAAKFDGTFYLWETNTWTSE---PWS--STSGFVTGATWD 286 (427)
Q Consensus 248 g~~l~~~~~dg~v~iwd~~~~~~~---~~~--~~~~~v~~v~~s 286 (427)
...|++|+..|.++||+....... ... ..+.+|..+..-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G 80 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG 80 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec
Confidence 357889999999999998554422 111 556778777764
No 484
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.46 E-value=4.1e+02 Score=23.69 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=34.9
Q ss_pred EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECC-CCCEEE
Q 014302 243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDP-EGRMIL 293 (427)
Q Consensus 243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~sp-dg~~l~ 293 (427)
...+++..+..++.|+..+..|.++..+.-.. -..+.-.+.+..| ++...+
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 35678999999999999999999988774332 2233334566667 444433
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=28.68 E-value=2.5e+02 Score=24.75 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=25.9
Q ss_pred EEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302 261 YLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL 300 (427)
Q Consensus 261 ~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~ 300 (427)
.+||+.+.+..... .......+-.+-+||+.|.+++..++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G 89 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG 89 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc
Confidence 46777776654333 33444555567899999988876553
No 486
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=8.7e+02 Score=27.17 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=32.2
Q ss_pred eCCCeEEEEEccCCCCcceeeccCCcCCeeEEE--------EccCCCceEEEecCCeEEEEecc
Q 014302 118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE--------WRPNGGRSLSVGCKGGICIWAPS 173 (427)
Q Consensus 118 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~--------~sp~~~~~la~g~~~~i~iw~~~ 173 (427)
+.|..+.+|+++.++ ....+.+....|..+. |.|.=+++|+.+.--.|.|+-+.
T Consensus 96 TiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred EeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 358889999999862 3333333333444444 33444467777766667776664
No 487
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=28.51 E-value=4.4e+02 Score=23.76 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=89.1
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~ 180 (427)
.-..++-.|||..-.++...+.|-=-|-.++ +....--+....-..|..-|||...+.-++. .|.-.+-+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tG--ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpk------- 132 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATG--EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPK------- 132 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCC--ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCc-------
Confidence 4456677788876666655555533333333 2222222222233445566777444433222 22222221
Q ss_pred cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC---------------ceEEe-ccCCeEEEEE
Q 014302 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG---------------TPIRR-GFGGLSILKW 244 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---------------~~~~~-~~~~v~~~~~ 244 (427)
+.+......-..+.........|.++|++=-++ ++++. ...+-+.++.
T Consensus 133 ----------------t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 133 ----------------TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred ----------------ccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEE
Confidence 011122222233335556677777777752111 11221 2345667888
Q ss_pred ccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 245 SPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 245 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
.|||..-++.-.+..|-..|......+.+. ........+--+|.|+.-++. ...+.+..++
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt-wg~g~l~rfd 260 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-WGTGSLHRFD 260 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEec-cCCceeeEeC
Confidence 899988777777778888787776544433 212333344445666666553 3333444443
No 488
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=28.44 E-value=6.4e+02 Score=25.56 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec------C-CeEEEEeccCCCC
Q 014302 110 HKHIVAFISGST-----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC------K-GGICIWAPSYPGN 177 (427)
Q Consensus 110 ~g~~lat~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~------~-~~i~iw~~~~~~~ 177 (427)
+|...|+|+.|| ++..||..+. ...............+-..-+..+.++|+ . ..+..||..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~---- 452 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE---- 452 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCC---cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC----
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
...|.....+... ....-.-.-++...+.|+.|
T Consensus 453 -------------------t~~W~~~~~M~~~----------------------------R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 453 -------------------TNTWTLIAPMNTR----------------------------RSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred -------------------CCceeecCCcccc----------------------------cccceEEEECCEEEEECCcc
Q ss_pred Cc-----EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302 258 GT-----FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT 301 (427)
Q Consensus 258 g~-----v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~ 301 (427)
+. |..||..+.+-............+....-+..+++.++.++.
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred CCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.25 E-value=2.3e+02 Score=20.39 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=21.7
Q ss_pred CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE
Q 014302 119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV 161 (427)
Q Consensus 119 ~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~ 161 (427)
.+|.+.-||..++ +...+..+. .--+.++.++|++.+|++
T Consensus 35 ~~GRll~ydp~t~--~~~vl~~~L-~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTK--ETTVLLDGL-YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTT--EEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCC--eEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence 3456656665555 333443332 246889999999555544
No 490
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=28.03 E-value=3.5e+02 Score=25.67 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCcccc--------------------
Q 014302 261 YLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDAH-------------------- 317 (427)
Q Consensus 261 ~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~~-------------------- 317 (427)
++-++...+...+. ...+-|+.+-.|-|.++|+++..-.+-|+++++.+. ...+.++
T Consensus 293 ~visvp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~ 372 (476)
T KOG0918|consen 293 VVISVPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEG 372 (476)
T ss_pred EEEecCccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEecccc
Q ss_pred -ccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302 318 -LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK 352 (427)
Q Consensus 318 -~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~ 352 (427)
..+.+......-...+...-+..|-||++|.++.+
T Consensus 373 ~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 373 LKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred ccCCCccceecCccccCCceeEEeccCCcEEEEEch
No 491
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=27.87 E-value=39 Score=32.60 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=43.7
Q ss_pred eEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEEccCCCceEEEecCC
Q 014302 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKG 165 (427)
Q Consensus 105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~~ 165 (427)
+.|++.+..++.+...+.+.|++.... ......+ |...+++++|.+.+ +.+..+++.
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgts---R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTS---RRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred HhhccCCccccccccccceEEEeccch---hhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 679999999999988899999876655 3334445 99999999999987 555555443
No 492
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=27.39 E-value=99 Score=17.74 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.1
Q ss_pred EEEEecCCcEEEEEcCCCCc
Q 014302 251 FFAAKFDGTFYLWETNTWTS 270 (427)
Q Consensus 251 l~~~~~dg~v~iwd~~~~~~ 270 (427)
++.++.+|.|+-.|.++++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp EEEETTTSEEEEEETTTTSE
T ss_pred EEEeCCCCEEEEEECCCCCE
Confidence 45567788888888888765
No 493
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=25.84 E-value=4.5e+02 Score=25.30 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=48.5
Q ss_pred eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302 328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 407 (427)
Q Consensus 328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v 407 (427)
.+..+.+|.++.|..|--+|++ +.-.+- +.+.|+...+-..+ .|.+.-++-..- .||- ..+.+|.|
T Consensus 423 Gl~~gERIYAvRf~gdv~yiVT-frqtDP-----lfviDlsNPenPkv--lGeLKIPGfS~Y-----LHpi-gen~~lGv 488 (603)
T COG4880 423 GLAPGERIYAVRFVGDVLYIVT-FRQTDP-----LFVIDLSNPENPKV--LGELKIPGFSEY-----LHPI-GENRLLGV 488 (603)
T ss_pred ccCCCceEEEEEEeCceEEEEE-EeccCc-----eEEEEcCCCCCCce--eEEEecCCchhh-----cccc-CCCcEEEe
Confidence 3444558999999988777766 655544 88889876543211 244444443221 3443 24678999
Q ss_pred EeeCc--eEEEEec
Q 014302 408 CWSSG--FCCTYPL 419 (427)
Q Consensus 408 ~~~~g--~i~~~~~ 419 (427)
|-.+| +|++|++
T Consensus 489 G~~~g~vKiSLFdi 502 (603)
T COG4880 489 GAYQGGVKISLFDI 502 (603)
T ss_pred ecccCCceEEEEec
Confidence 98888 4566664
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.53 E-value=9.2e+02 Score=26.47 Aligned_cols=29 Identities=3% Similarity=0.109 Sum_probs=24.7
Q ss_pred ceeeeEEcCCCCEEEEEeCCCeEEEEEcc
Q 014302 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (427)
Q Consensus 101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~ 129 (427)
....++|+|...++|.++.+|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45678999999999999999999997543
No 495
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=24.89 E-value=6.2e+02 Score=24.23 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCC-----CCEEEEEEcCCc-----ee
Q 014302 240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPE-----GRMILLAFAGSL-----TL 302 (427)
Q Consensus 240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spd-----g~~l~~~~~~~~-----~i 302 (427)
+.+.+-|+|..+++.-.-|.+++.-.......... ........++.+|+ ..++.++...+. .+
T Consensus 70 ~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~~~~~~~~n~~ 149 (399)
T COG2133 70 WGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEPGGGLYVANRV 149 (399)
T ss_pred hhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEeecCCceEEEEE
Q ss_pred eeeeeCCCCCCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEEEec-------CCCcceeEEEEEEeccCceEE
Q 014302 303 GSIHFASKPPSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVSYKG-------GDDIYKGLIAIYDARRTPLIS 374 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~-------~~d~~~g~i~vwd~~~~~~~~ 374 (427)
.++.+.....++......+ .++... .|.+ ..+.|+|||+++++.-.. +.....|+|.=.+........
T Consensus 150 ~~~~~~~g~~~l~~~~~i~~~lP~~~--~H~g--~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d 225 (399)
T COG2133 150 AIGRLPGGDTKLSEPKVIFRGIPKGG--HHFG--GRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPAD 225 (399)
T ss_pred EEEEcCCCccccccccEEeecCCCCC--CcCc--ccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccC
Q ss_pred EeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302 375 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 407 (427)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v 407 (427)
....+----.....++..++|+|. .|.|.++
T Consensus 226 ~p~~~~~i~s~G~RN~qGl~w~P~--tg~Lw~~ 256 (399)
T COG2133 226 NPFPNSEIWSYGHRNPQGLAWHPV--TGALWTT 256 (399)
T ss_pred CCCCCcceEEeccCCccceeecCC--CCcEEEE
No 496
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=24.86 E-value=5.5e+02 Score=23.59 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=36.0
Q ss_pred eEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC---CCCCceeEEEeeCceEEEEec
Q 014302 360 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK---FKQGPLLSVCWSSGFCCTYPL 419 (427)
Q Consensus 360 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~~g~~l~v~~~~g~i~~~~~ 419 (427)
|.|-+||+...-+.++...|.++.+- -|+.-|. .-.|.||.--..||+|-.|+.
T Consensus 222 G~VdvFd~~G~l~~r~as~g~LNaPW------G~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 222 GYVNVFTLNGQLLRRVASSGRLNAPW------GLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred ceEEEEcCCCcEEEEeccCCcccCCc------eeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 67999999766655566666665542 2332222 114778888888999999984
No 497
>PHA03098 kelch-like protein; Provisional
Probab=24.43 E-value=7.1e+02 Score=24.74 Aligned_cols=199 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCC------eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC------eEEEEeccCCCC
Q 014302 110 HKHIVAFISGST------QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG------GICIWAPSYPGN 177 (427)
Q Consensus 110 ~g~~lat~~~d~------~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~------~i~iw~~~~~~~ 177 (427)
++..++.|+.++ .+..||..+..+...............+.. ++ .+++.|+.. .+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~---- 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPG---- 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCC----
Q ss_pred ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 257 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 257 (427)
...|.....+... ........-+++..+.|+.+
T Consensus 367 -------------------~~~W~~~~~lp~~----------------------------r~~~~~~~~~~~iYv~GG~~ 399 (534)
T PHA03098 367 -------------------ESKWREEPPLIFP----------------------------RYNPCVVNVNNLIYVIGGIS 399 (534)
T ss_pred -------------------CCceeeCCCcCcC----------------------------CccceEEEECCEEEEECCcC
Q ss_pred ------CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCce-------eeeeeeCCCCCCcccccccccc
Q 014302 258 ------GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLT-------LGSIHFASKPPSLDAHLLPVDL 323 (427)
Q Consensus 258 ------g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~ 323 (427)
..+..||..+.+=.... .........+...+++.+++|+..... +..++.....-..-......
T Consensus 400 ~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-- 477 (534)
T PHA03098 400 KNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-- 477 (534)
T ss_pred CCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--
Q ss_pred ccceeeccCCceeEEEECCCCCEEEEEEecCCCcce--eEEEEEEeccCceEEEee
Q 014302 324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK--GLIAIYDARRTPLISLSL 377 (427)
Q Consensus 324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~--g~i~vwd~~~~~~~~~~~ 377 (427)
....-...-+++.++. |+.+... ..|.+||..+........
T Consensus 478 ----------r~~~~~~~~~~~iyv~---GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 478 ----------RINASLCIFNNKIYVV---GGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ----------cccceEEEECCEEEEE---cCCcCCcccceeEEEeCCCCEEEecCC
No 498
>PHA02713 hypothetical protein; Provisional
Probab=23.84 E-value=4.5e+02 Score=26.48 Aligned_cols=23 Identities=4% Similarity=0.117 Sum_probs=16.5
Q ss_pred CCCEEEEEecCC--cEEEEEcCCCC
Q 014302 247 TGDYFFAAKFDG--TFYLWETNTWT 269 (427)
Q Consensus 247 ~g~~l~~~~~dg--~v~iwd~~~~~ 269 (427)
+|+..++|+.++ ++..||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 667777888888 67777776554
No 499
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=22.82 E-value=9.4e+02 Score=27.87 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCeEEEEEccCCCE-EEEEecCCcEEEEEcCCCCcc---------ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302 237 GGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSE---------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 306 (427)
Q Consensus 237 ~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~ 306 (427)
..+.+++.+++|.. ++++.....+.+|++...... .+........+|.++++ .|+++ ..++.+|.-+
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvA-DseGkLYsa~ 514 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVA-DSEGKLYSAD 514 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEE-eCCCCEEecc
Confidence 45677778899987 447766677899998765321 11134446778888876 45544 4455777766
Q ss_pred eCC
Q 014302 307 FAS 309 (427)
Q Consensus 307 ~~~ 309 (427)
+..
T Consensus 515 l~~ 517 (1774)
T PF11725_consen 515 LPA 517 (1774)
T ss_pred ccc
Confidence 654
No 500
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=22.52 E-value=85 Score=23.67 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=13.3
Q ss_pred EEEECCCCCEEEEEEec
Q 014302 337 KIAWDASGERLAVSYKG 353 (427)
Q Consensus 337 ~v~~sp~g~~La~~~~~ 353 (427)
.=.|||||++|..++.+
T Consensus 72 vHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 72 VHVFSPDGSWLSFTYND 88 (122)
T ss_pred ceEECCCCCEEEEEecc
Confidence 34699999999886554
Done!