Query 014304
Match_columns 427
No_of_seqs 134 out of 1678
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.8E-44 1.3E-48 361.0 28.3 362 26-426 80-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.2E-27 1.1E-31 234.4 24.3 335 26-410 87-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 2.2E-24 7.6E-29 213.2 32.5 309 26-405 86-428 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 3.1E-23 1.1E-27 208.3 20.7 361 26-418 79-480 (491)
5 2cfq_A Lactose permease; trans 99.9 5E-21 1.7E-25 188.6 15.9 334 26-419 68-409 (417)
6 2gfp_A EMRD, multidrug resista 99.9 4.5E-22 1.6E-26 192.7 8.0 119 26-144 60-180 (375)
7 2xut_A Proton/peptide symporte 99.8 2.3E-20 7.8E-25 189.0 14.1 111 26-136 79-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.4E-10 5E-15 114.1 20.3 140 276-415 68-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 4.1E-09 1.4E-13 103.3 22.5 108 276-383 67-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 2.8E-09 9.7E-14 106.3 21.4 137 276-412 60-199 (491)
11 2gfp_A EMRD, multidrug resista 99.0 1.8E-09 6.2E-14 103.8 13.8 142 276-417 41-182 (375)
12 2xut_A Proton/peptide symporte 99.0 1.7E-08 5.8E-13 101.6 18.2 135 277-411 61-200 (524)
13 4gc0_A D-xylose-proton symport 98.7 5.7E-07 1.9E-11 89.4 16.7 104 280-383 65-186 (491)
14 2cfq_A Lactose permease; trans 98.4 2.5E-07 8.7E-12 90.3 5.6 118 26-143 284-404 (417)
15 2g9p_A Antimicrobial peptide l 29.3 35 0.0012 17.5 1.8 14 290-303 3-16 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.8e-44 Score=360.95 Aligned_cols=362 Identities=20% Similarity=0.216 Sum_probs=256.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh------------------cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSS------------------FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN 86 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~------------------~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~ 86 (427)
||+|||++++++++++.+++++++ +++|+.+++++|+++|+|.|+. ++...|+.|++|+++
T Consensus 80 Dr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 80 NRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 699999999999999999999998 4789999999999999999997 567788999999999
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHH
Q 014304 87 RGMWMVIFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRA 158 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~ 158 (427)
||+..++.+.++.+|.+.+..+.+... ...+||+++.+..+++++.++.++++|||||||..|+|.||+++.
T Consensus 160 rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 160 RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 999999999999999998887766542 235699999999999999888889999999999999999999999
Q ss_pred HHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHH
Q 014304 159 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238 (427)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (427)
++|.++.+..+. +.. +..+... +.++ ......+++ .++..+..+..++.+..
T Consensus 240 l~~~~~~~~~~~---~~~--------------~~~~~~~-----~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~ 291 (491)
T 4gc0_A 240 LRKIMGNTLATQ---AVQ--------------EIKHSLD-----HGRK----TGGRLLMFG--VGVIVIGVMLSIFQQFV 291 (491)
T ss_dssp HHHHHHHHHHHH---HHH--------------HHHHHHH-----HHHH----HTTHHHHSC--CTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCchhHH---HHH--------------HHHHHHH-----hhhh----hhhHHHHhc--ccHHHHHHHHHHHHHHh
Confidence 998766432110 000 0000000 0000 001112222 12222223333334444
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 014304 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 318 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~ 318 (427)
.++....+.+.+.... ............+.++..+++.+++++++||+|||+.+..+...+.++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp CHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 4444444444443211 11222334445666778888999999999999999998877766655544433
Q ss_pred h--h-cc-hhHHHHHHHH-HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh------cc
Q 014304 319 T--Y-QS-NILTTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN------CH 387 (427)
Q Consensus 319 ~--~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~------~~ 387 (427)
. . .. ........+. ...+..+..++.|.+.+|+||+++|+++.|+++++++++++++|++.+.+.+. .+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 1 11 2222222222 22233444567899999999999999999999999999999999888766432 22
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccCCCCcccccccccC
Q 014304 388 QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~~~~~~ 426 (427)
...++++++++++++.++++++.||||||++||+++..|
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 235678899999999998888889999999999776543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=3.2e-27 Score=234.35 Aligned_cols=335 Identities=12% Similarity=0.126 Sum_probs=221.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~----a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.++++.++.+++.++.++ ++|+++++++|++.|++.|.. +...+++.|+.|+++|++..++.+.+..+
T Consensus 87 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 87 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 6999999999999999999999999 999999999999999999876 56678899999999999999999999999
Q ss_pred hHhHHHHHHHHhcCCCC-hhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 101 GSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~-WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.++++.++..+....+ ||+.+++.+++.++.. +.++.+||+|+....+++.++ ++ +
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~ 225 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------KN--------D 225 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------CC--------C
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-------------cc--------c
Confidence 99999888766555677 9999999888776644 445678999975321111000 00 0
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
++ ++. ++ +++++..... ...+.+++.+ +.+......+.....+++...+.|......
T Consensus 226 -----~~----~~~----~~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 282 (451)
T 1pw4_A 226 -----YP----DDY----NE--KAEQELTAKQ-IFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV---- 282 (451)
T ss_dssp ----------------------------CCTH-HHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----
T ss_pred -----cc----ccc----hh--hhhccccccc-chHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 00 000 00 0000000000 1123344322 222233333444555556655655543210
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHhhc--chhHHHHHHHHH
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 333 (427)
.+.+.........+..+..+++.++.+++.||+ |||+.+..+..+.. +....+.... +.+......+..
T Consensus 283 ------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 283 ------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 111222222334455667788889999999999 99998776655444 3333222221 222222223333
Q ss_pred HHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhH-hHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.++..+.....+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+++.+..+....+.+++++.+++.++..++.
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566789999999999999999999999999 9999999999988877655667777777777766666554
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=2.2e-24 Score=213.17 Aligned_cols=309 Identities=11% Similarity=-0.009 Sum_probs=204.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~---~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++++.+++.++.++. ++++|+++++++|++.|++.|.. +...+++.|+.|+++|++..++.+.+..+|
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 69999999999999999999999 89999999999999999999986 567788999999999999999999999999
Q ss_pred HhHHHHHHHHhc-CCCC-------------------------hhHHHHhhhHHHHHHHHHh--hcccCcchhHhhcCchH
Q 014304 102 SVSEAIGAWIIM-PRLD-------------------------WRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~~~~~~~~~~~~-~~~~-------------------------WR~~~~~~~i~~~i~~~~~--~~lpESP~~L~~k~r~~ 153 (427)
.++++.++..+. ...+ ||+.+.+.++..++..+.. ...||+++.. +
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~-- 239 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----H-- 239 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----C--
T ss_pred HHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----c--
Confidence 999988876655 4443 9999977766655443332 3356655310 0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014304 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+ ++ +.++....++++++.+..+...+..
T Consensus 240 ---------------~--------------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~--- 267 (438)
T 3o7q_A 240 ---------------S--------------DA--------------------KQGSFSASLSRLARIRHWRWAVLAQ--- 267 (438)
T ss_dssp ---------------C--------------CS--------------------STTSHHHHHHHHTTCSHHHHHHHHH---
T ss_pred ---------------c--------------cc--------------------cccchhhhHHHHHhChHHHHHHHHH---
Confidence 0 00 0000112445556544333322222
Q ss_pred HHHHHHHHHHHHHHHHh-hccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 014304 234 FGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 312 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~ 312 (427)
+.....+++...+.+.. .... .+.+.........+..+..+++.++.+++.||+|||+.+..+.+++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22233333333343433 2110 011111222233445667788889999999999999998877766655
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHH
Q 014304 313 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTA 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~ 391 (427)
..+......+.. .........++....++..+.+..|.+|++ |+++.++.. .+++++.++|.+.+++.+..+ ....
T Consensus 338 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 338 LCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp HHHHHHHCCHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 544443322222 222233333444556678899999999988 999999887 788999999999999888766 4455
Q ss_pred HHHHHHHHHHHHHH
Q 014304 392 VVLLVVVIVTSILS 405 (427)
Q Consensus 392 ~~~~~~~~~i~~~~ 405 (427)
+.+.+++.++..++
T Consensus 415 ~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 415 ELIPALCFAVIFIF 428 (438)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=3.1e-23 Score=208.28 Aligned_cols=361 Identities=10% Similarity=-0.039 Sum_probs=191.8
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc--chhHHHHHHHHHHHh
Q 014304 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~-~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG 101 (427)
|| +|||+++.++.++..++.++.++++|+++++++|++.|++.|.. +....++.|+.|+++ |+...++.+....+|
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 79 DRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 59 89999999999999999999999999999999999999999876 566788899999998 777788889999999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhh-cccC----cchhHhhcCchHHHHHHHHH--------------H
Q 014304 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPE----SPRYLCLKGRTAEAHRALEK--------------I 162 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~-~lpE----SP~~L~~k~r~~ea~~~l~~--------------~ 162 (427)
..+++.++..+....+||+.|.+.++..++..+... ..|+ ..+--..+.+.+|.++..++ +
T Consensus 159 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 238 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM 238 (491)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887776668999999988766555433322 1121 11100011123333333222 0
Q ss_pred HhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHH-
Q 014304 163 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY- 241 (427)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y- 241 (427)
...++.+ .++....... . ... .......... + ++.. . ...+++.. .....+...+.....++
T Consensus 239 ~~~~~~~--~~~~~~~~~~-~-~~~--~~~~~~~~~~-~--~~~~-----~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 301 (491)
T 4aps_A 239 NLVGWNS--LPAYINLLTI-V-AIA--IPVFYFAWMI-S--SVKV-----T--STEHLRVV-SYIPLFIAAVLFWAIEEQ 301 (491)
T ss_dssp HHHSSCC--TTHHHHHHHH-H-HHH--HHHHHHHHHC----------------------CT-THHHHHHHHHHHHHHHGG
T ss_pred HhccCcc--cccchhhhhH-H-HHH--HHHHHHHHHh-h--cccc-----c--HHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 1111100 0000000000 0 000 0000000000 0 0000 0 00001111 11111111111111111
Q ss_pred ---HHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-----HHHHHHHHH
Q 014304 242 ---AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLF 313 (427)
Q Consensus 242 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~-----~~~~~~~~~ 313 (427)
.+..+....... ...... . ......+..+++..+.+++.||+|||+... .+....++.
T Consensus 302 ~~~~~~~~~~~~~~~------------~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 302 GSVVLATFAAERVDS------------SWFPVS-W-FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp GGTHHHHHHHHSCCC------------SSSCSG-G-GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcc------------CccCHH-H-HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 111111111100 000111 1 112234445566778899999999986543 333333332
Q ss_pred HHHHHhhc---------chhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 314 LLPLVTYQ---------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 314 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
...+.... +.+..........++.....+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222110 112222222222233333356778999999999999999999999999999999988776544
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 014304 385 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418 (427)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l 418 (427)
. +....+..++.+++++.+..+++.|+++++..
T Consensus 448 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 448 K-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp S-STTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 34456777777777777777777777776543
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=5e-21 Score=188.55 Aligned_cols=334 Identities=13% Similarity=0.021 Sum_probs=180.3
Q ss_pred hhccchhHHHHHHHHHHHHHH---HhhcchhHH-HHHHHHHHhhhccccc-hhhhhhhhhccCC--CcchhHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGL---LSSFSPNYI-TLITLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~---~~~~a~~~~-~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~--~~Rg~~~~~~~~~~ 98 (427)
||+|||+.++++..+++++.. ...+++... .+..+|++.|++.|.. ....+...++.++ ++|+...+......
T Consensus 68 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 147 (417)
T 2cfq_A 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG 147 (417)
T ss_dssp TTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSST
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHH
Confidence 599999999988887655321 123333221 3456777777776643 2222333344433 34565566666666
Q ss_pred HHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 99 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+|..+++.++..+.. .+||..|++.+++.++..+..++.||+|+. +.+.+| ++
T Consensus 148 ~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~---------- 201 (417)
T 2cfq_A 148 CVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN------------AV---------- 201 (417)
T ss_dssp TTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS------------SS----------
T ss_pred HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc------------cc----------
Confidence 7777777666554433 579999998887765555544444443321 000000 00
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+ + + + ++ .....++++++.+..... +...+.....++....+.|......
T Consensus 202 ---~--~-~---------------~-~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (417)
T 2cfq_A 202 ---G--A-N---------------H-SA--FSLKLALELFRQPKLWFL---SLYVIGVSCTYDVFDQQFANFFTSF---- 250 (417)
T ss_dssp ---S--S-C---------------C-CC--CCHHHHHHHTTCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred ---c--c-c---------------c-cc--ccHHHHHHHhcCCchhhH---HHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0 0 0 0 00 001233444543222211 1111222222222222222211100
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
................+..+..+++.++.+++.||+|||+.+..+....++....+....+.+..........++..
T Consensus 251 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (417)
T 2cfq_A 251 ---FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp ---SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHH
T ss_pred ---HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00000000111112234445667788899999999999998877665555443333322222221111111122222
Q ss_pred hhhHhHHhhccccCccchhhHHHHHH-HHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 339 GAFTVSLIYAAEIYPTSVRSTGAGAA-NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~-~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
......+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....+.+.+++.+++.+..+++.||+|..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 23345688999999999999999996 67778999999999998887665555677777777888777777778877655
Q ss_pred cc
Q 014304 418 LS 419 (427)
Q Consensus 418 l~ 419 (427)
+-
T Consensus 408 ~~ 409 (417)
T 2cfq_A 408 LL 409 (417)
T ss_dssp SS
T ss_pred HH
Confidence 43
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.85 E-value=4.5e-22 Score=192.74 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=105.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++.++..++.++.++++|+..++++|++.|++.+.. +....++.|+.|+++|++..++.+....+|..+
T Consensus 60 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 60 DRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139 (375)
T ss_dssp TTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999876 556788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcch
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~ 144 (427)
++.++..+....+||+.+.+.++..++..+ ..+.+||+|+
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 998888776667999999988887766554 4567888875
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=2.3e-20 Score=188.98 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=95.7
Q ss_pred hhc-cchhHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH---HHHHHH
Q 014304 26 WQN-LVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWT 99 (427)
Q Consensus 26 ~~~-GRk~~l~~~~~~~~i~~~~~~~a~-~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~ 99 (427)
||+ |||+++.++.++..++.++.++++ |+..++++|++.|++.|.. +...+++.|+.|+++|++..+. .+....
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 79 DRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN 158 (524)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 699 999999999999999999999999 9999999999999999886 5667888999999999877666 888889
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHh
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~ 136 (427)
+|..+++.++..+....+||+.|.+.++..++..+..
T Consensus 159 ~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999888877666666899999998887766554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.30 E-value=1.4e-10 Score=114.13 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=100.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hcchhHHHHHHHHHHHHHhhhhHhHHhhcccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
..+..+...++.++.|.+.||+|||+.+..+.++.++..+.... ..+.+...+..++..++.....+....+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34456667788899999999999999988877766655554444 33333323333333444444556778999999
Q ss_pred CccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
+|++.|+++.|+.+....+|..++|.+.+++.+..+ -...+.+.+.+.++..+...++.||++.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999888776655 4455666666666665655555567544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.16 E-value=4.1e-09 Score=103.30 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=79.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....+...++.++.|.++||+|||+.+..+.++.++..+.. ....+.+...+..++..++.....+....+.+|.+
T Consensus 67 ~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 146 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG 146 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc
Confidence 344556667788899999999999999988776665554443 22223232223333334444455567899999999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
|++.|+.+.|+.+....+|..++|.+.+.+.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=2.8e-09 Score=106.30 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=95.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 276 EFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~-~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.....++..++.++.|+++|| +|||+.+..+..+.++..+......+.+...+..++..++.....+....+.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 344566677888999999999 8999999888776665555444433333333333333444444567789999999999
Q ss_pred ch--hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 355 SV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 355 ~~--R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+. |+++.++.+....+|..++|.+.+.+.+..+-...+.+.+...+++.+...+..|+
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88 77788888899999999999999988776654455666555555555555444333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.04 E-value=1.8e-09 Score=103.75 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=97.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|++.||+|||+.+..+....++.........+.+......++..++.....+....+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 34445666777888999999999999888776666555444433322222222223333333445567789999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 99999999999999999999998887765544344556666666666554555667876543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.97 E-value=1.7e-08 Score=101.56 Aligned_cols=135 Identities=16% Similarity=0.047 Sum_probs=91.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 277 FITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~-GRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.+..+...++.++.|+++||+ |||+.+..+.++.++..+...... +.+......++..++.....+....+.+|.+|+
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 344556677888999999999 999998887766655554444433 333222223333333344456778999999999
Q ss_pred chhhHHHHH---HHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 014304 355 SVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 355 ~~R~~~~g~---~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
+.|+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+...+..|
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999876666 888889999999988887776655445566666665555555444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.65 E-value=5.7e-07 Score=89.44 Aligned_cols=104 Identities=17% Similarity=0.049 Sum_probs=71.2
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-----------------cchh-HHHHHHHHHHHHHhhhh
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----------------QSNI-LTTGLLFGARMCVMGAF 341 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~ 341 (427)
.++..+|.++.|++.||+|||+.+..+.++..+..+..++. .++. ...+.=++..++..+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999888766555444333210 1111 11122233334445566
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
+....|.+|..|++.|+...++......+|..+++.....+.
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 788999999999999999999988887777777766555443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.38 E-value=2.5e-07 Score=90.34 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=90.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH-HHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~~ 103 (427)
||+|||+.+..+..+..++.+..+++++...+++..++.|++.+.. +....+..|..|++.||...++ .+....+|..
T Consensus 284 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH
Confidence 6999999999888888888778888888888888888888886654 4456788999999999998777 4777778888
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcc
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESP 143 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP 143 (427)
+++.+...+....+|+..|.+.++..++..+. +...||.+
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 88777666555567888888877776665444 34455544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=29.27 E-value=35 Score=17.45 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHhhhChhHHH
Q 014304 290 AAILVDTAGRKLSI 303 (427)
Q Consensus 290 ~~~l~d~~GRR~~~ 303 (427)
.|-++.|+|||...
T Consensus 3 fgklikkfgrkais 16 (26)
T 2g9p_A 3 FGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHTSHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 46788999999743
Done!