Citrus Sinensis ID: 014309

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MSNPQQISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEWWADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSMATELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARSEATAFSPKSALGNTL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccEccccc
Coil and Loop (DISEMBL)
msnpqqisasssrfpdnihfssvspherysqnspfisqSLRDEArlrsthfspsegqptplinhpeenkdnswcidplqdfldfpendpgqtgllesntgdiasddRAKRIEWWADQLisvedgpepnwsevladanvtdarqkvlkpstdiptqhpqvhpqgqqhqpvsneefhavanplsmtpanksrmrwTPELHEAFVEAVNrlgggeratpkgvlKLMNVENLTIYHVKSHLQKYRtarhrpessegtsekksnptedmksldtKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMenekskasssslenpsaplfeskqhsspnetsmATELdvaktgadtshvisapedssaslnqkqkapetktgeevdpdddesghkpvkrarseatafspksalgntl
Flexible Loop (DISEMBL)
msnpqqisasssrfpdNIHFSsvspherysqnsPFISQSLRDEARLRSThfspsegqptpLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGllesntgdiasdDRAKRIEWWADQLIsvedgpepnWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRtarhrpessegtsekksnptedmksldtKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLfeskqhsspnETSMATELDVAKTGADTSHVIsapedssaslnqkqkapetktgeevdpdddesghkpvkrarseatafspksalgntl
Low Complexity Region (SEG)
MSNPQQISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEWWADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIPTqhpqvhpqgqqhqpvSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSMATELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARSEATAFSPKSALGNTL
Disordered region (IsUnstruct)
************************************************************************WCIDPLQDFLDF***********************AKRIEWWADQLISVE*********V************************************************************WTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQK********************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**************************************************************************IDPLQDFLDFPEN*************************WWADQLIS***********************************************************************RWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYR******************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
************RFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEWWADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIP****************SNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSH*********************************KTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQ***************************************ELDVAKTGADTSHVISA*******************************************************
Disordered Region (DISPRO)
*********************************************************************DNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEWWADQLISVEDGPEPNWSEVLADA***************************************************KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR*************************TMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQME**********************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNPQQISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEWWADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSIxxxxxxxxxxxxxxxxxxxxxRNLQLRxxxxxxxxxxxxxxxxxxxxxKSKASSSSLENPSAPLFESKQHSSPNETSMATELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARSEATAFSPKSALGNTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	yes	no	0.747	0.772	0.5	3e-78
Q9SAK5	358	Myb family transcription	no	no	0.325	0.388	0.457	3e-29
Q9FJV5	276	Probable transcription fa	no	no	0.161	0.25	0.605	9e-16
Q941I2	322	Probable transcription fa	no	no	0.154	0.204	0.602	1e-15
Q0J235	532	Probable transcription fa	no	no	0.175	0.140	0.543	1e-15
Q700D9	255	Putative Myb family trans	no	no	0.128	0.215	0.672	3e-15
Q93WJ9	403	Transcription repressor K	no	no	0.159	0.168	0.591	4e-15
Q9C616	388	Probable transcription fa	no	no	0.140	0.154	0.625	7e-15
Q9LZJ8	426	Putative two-component re	no	no	0.135	0.136	0.532	4e-10
P62598	596	Two-component response re	no	no	0.135	0.097	0.576	4e-10

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 173/346 (50%), Positives = 229/346 (66%), Gaps = 27/346 (7%)

Query: 1   MSNP---QQISASSS---RFPDNIHFSSVS---PHERYSQNSPFISQSLRDEARLRSTHF 51
           M+NP   Q +S  +S    FP +  + +VS   PH R  QN P +S   RD   ++    
Sbjct: 44  MNNPVPCQSVSGGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDRLAMQDC-- 101

Query: 52  SPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDI-ASDDRAKR 110
            P   Q + + +HP+E       IDPL +F DF ++ P Q    ES+   + +S +  K+
Sbjct: 102 -PLIAQSSLINHHPQE------FIDPLHEFFDFSDHVPVQNLQAESSGVRVDSSVELHKK 154

Query: 111 IEW--WADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQP 168
            EW  WADQLISV+DG EPNWSE+L D++  +   ++  P  D+P      +   QQ Q 
Sbjct: 155 SEWQDWADQLISVDDGSEPNWSELLGDSSSHNPNSEIPTPFLDVPRLDITAN---QQQQM 211

Query: 169 VSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENL 228
           VS+E+  +  N  S    +K RMRWTPELHEAFVEAVN+LGG ERATPK VLKL+N   L
Sbjct: 212 VSSEDQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGL 271

Query: 229 TIYHVKSHLQKYRTARHRPESSEGTS---EKKSNPTEDMKSLDTKTTMSITEALRLQMEV 285
           TIYHVKSHLQKYRTAR++PE+SE T    EKK    ED+KSLD KT++ IT+ALRLQMEV
Sbjct: 272 TIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEV 331

Query: 286 QKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSS 331
           QKRLHEQLEIQR+LQL+IE+QGR+LQMMFE+++++++ KS +S +S
Sbjct: 332 QKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEAS 377

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 96/142 (67%), Gaps = 3/142 (2%)

Query: 181 LSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240
           L +T   K R+RWT ELHE FV+AV +LGG ++ATPK ++++M V+ LT+YH+KSHLQK+
Sbjct: 27  LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query: 241 RTAR--HRPESSEGTSEKKSNPTEDM-KSLDTKTTMSITEALRLQMEVQKRLHEQLEIQR 297
           R  +  H+      T E       D+ +++ + + M       +QMEVQ+RLHEQLE+QR
Sbjct: 87  RLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQR 146

Query: 298 NLQLRIEEQGRHLQMMFEQRKQ 319
           +LQLRIE QG+++Q + E+  Q
Sbjct: 147 HLQLRIEAQGKYMQSILERACQ 168

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 2/71 (2%)

Query: 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPES 249
           RMRWT  LH  FV AV  LGG ERATPK VL+LMNV++LT+ HVKSHLQ YRT +   + 
Sbjct: 107 RMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKG 166

Query: 250 S--EGTSEKKS 258
           S  EG  EK++
Sbjct: 167 SPGEGKVEKEA 177

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 2/68 (2%)

Query: 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR--HRP 247
           RMRWT  LH  FV AV  LGG ERATPK VL+LM+V++LT+ HVKSHLQ YRT +   +P
Sbjct: 166 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKP 225

Query: 248 ESSEGTSE 255
            +S G S+
Sbjct: 226 TTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 6/81 (7%)

Query: 185 PANKS----RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240
           PA +S    RMRWT  LH  FV AV  LGG ERATPK VL+LM+V++LT+ HVKSHLQ Y
Sbjct: 317 PAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 376

Query: 241 RTARH--RPESSEGTSEKKSN 259
           RT +   +P +S G ++  S 
Sbjct: 377 RTVKSTDKPAASSGPADGGSG 397

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR 244
           R+RWTPELH +FV AV+ LGG  +ATPK VLK+M+V+ LTI HVKSHLQ YR +R
Sbjct: 25  RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 3/71 (4%)

Query: 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR--HRP 247
           RMRWT  LH  FV AV  LGG ERATPK VL+LM+V++LT+ HVKSHLQ YRT +  ++P
Sbjct: 221 RMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKP 280

Query: 248 -ESSEGTSEKK 257
             SS+G+ E++
Sbjct: 281 AASSDGSGEEE 291

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 4/64 (6%)

Query: 185 PANKS----RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240
           PA +S    RMRWT  LH  FV AV  LGG ERATPK VL+LM+V++LT+ HVKSHLQ Y
Sbjct: 206 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

Query: 241 RTAR 244
           RT +
Sbjct: 266 RTVK 269

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLM----NVENLTIYHVKSHLQK 239
           +P  K RM+WTPELH  F  AV ++G  E+A PK +LK M    NV+ LT  +V SHLQK
Sbjct: 207 SPTKKPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQK 266

Query: 240 YR 241
           YR
Sbjct: 267 YR 268

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR 246
           K R+ WT ELH+ FV AVN+LG  E+A PK +L LMNVE LT  +V SHLQK+R    R
Sbjct: 195 KQRVVWTVELHKKFVAAVNQLGY-EKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKR 252

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
224145821	436	predicted protein [Populus trichocarpa]	0.955	0.935	0.597	1e-130
255561969	459	DNA binding protein, putative [Ricinus c	0.939	0.873	0.626	1e-126
224125730	331	predicted protein [Populus trichocarpa]	0.744	0.960	0.663	1e-114
302143569	407	unnamed protein product [Vitis vinifera]	0.873	0.916	0.532	1e-101
225438007	517	PREDICTED: uncharacterized protein LOC10	0.936	0.773	0.526	1e-100
225465577	456	PREDICTED: uncharacterized protein LOC10	0.861	0.807	0.528	1e-99
449449583	444	PREDICTED: protein PHR1-LIKE 1-like [Cuc	0.911	0.876	0.528	8e-96
297744202	432	unnamed protein product [Vitis vinifera]	0.885	0.875	0.509	2e-94
255571218	491	transcription factor, putative [Ricinus	0.934	0.812	0.502	5e-94
356572282	484	PREDICTED: uncharacterized protein LOC10	0.929	0.820	0.509	7e-93

>gi|224145821|ref|XP_002325776.1| predicted protein [Populus trichocarpa] gi|222862651|gb|EEF00158.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/420 (59%), Positives = 310/420 (73%), Gaps = 12/420 (2%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPE 66
           + +SSSRF +++  S+VSP  + S NSPFISQSLRD      TH+S SEGQ T  INH +
Sbjct: 23  LVSSSSRFTNDMSVSAVSPQGKQSHNSPFISQSLRDGGNFPPTHYSHSEGQSTAFINHSD 82

Query: 67  ENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEW--WADQLISVEDG 124
           +NK  SW IDPLQ+F++F EN P Q G +ES  G IAS+D AKR +W  WADQLISV+D 
Sbjct: 83  DNKGLSWPIDPLQEFINFVENVPVQNGQVESTAGVIASEDHAKRTDWQEWADQLISVDDE 142

Query: 125 PEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMT 184
            EPNWSE+L D N+ D++QK+L P+  +  Q P +H    QHQ   + E  AV NPL   
Sbjct: 143 LEPNWSEILNDVNMKDSKQKMLSPNNSV--QQPLIH----QHQTAHSGEVCAVTNPLLAA 196

Query: 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR 244
           P  KSRMRWTPELHEAFVEAVN+LGG ERATPKGVLK MNVE LTIYHVKSHLQKYRTAR
Sbjct: 197 PPTKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKQMNVEGLTIYHVKSHLQKYRTAR 256

Query: 245 HRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIE 304
           ++PESSEGTSEKK +P E+MKSLD KT+M I+EALRLQMEVQK+LHEQLEIQRNLQLRIE
Sbjct: 257 YKPESSEGTSEKKLSPVEEMKSLDLKTSMEISEALRLQMEVQKQLHEQLEIQRNLQLRIE 316

Query: 305 EQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSP-NETSMATELDVAKTG 363
           EQGR+LQ MFE++K+ME ++SKA   S  +PS  L +SK   SP N+    ++LD  KT 
Sbjct: 317 EQGRYLQEMFEKQKKMEGDRSKAPPPSQNDPS--LLQSKLEQSPANDKLETSDLDCVKTR 374

Query: 364 ADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARS-EATAFSPKSA 422
            DT +  +  E+SS S+N+KQKAPE +  + VD +++++   PVKR R+ EATA S + A
Sbjct: 375 FDTCNASALLEESSQSINRKQKAPEDRNCQVVDKNEEKTSLAPVKRPRTDEATALSAEPA 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561969|ref|XP_002521993.1| DNA binding protein, putative [Ricinus communis] gi|223538797|gb|EEF40397.1| DNA binding protein, putative [Ricinus communis]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/415 (62%), Positives = 308/415 (74%), Gaps = 14/415 (3%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARL--RSTHFSPSEGQPTPLINH 64
           + +SS R       SS++P    SQNSPFISQSLRD+  L   +TH S SE Q T LINH
Sbjct: 53  LFSSSMRSSIEAQASSLAPQGGQSQNSPFISQSLRDKGSLPVLTTHSSNSEVQSTALINH 112

Query: 65  PEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEW--WADQLISVE 122
            EENKD SW IDPL D LDFPEN   Q G +ES  G I S+D +KR +W  WADQLISV+
Sbjct: 113 SEENKDMSWTIDPLHDLLDFPENVAVQNGQVESTIGVITSEDFSKRTDWQEWADQLISVD 172

Query: 123 DGPEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLS 182
           D  EPNWSE+L DAN  D +QKV+K S+ I  Q P VH    Q QPV N E ++ ANP+S
Sbjct: 173 DDLEPNWSELLNDANNADRKQKVVKSSSQISVQ-PTVH----QPQPVHNGEPYSAANPMS 227

Query: 183 MTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 242
             PA K RMRWTPELHEAFVEAVN+LGG ERATPKGVLKLMNVE LTIYHVKSHLQKYRT
Sbjct: 228 AIPAAKHRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 287

Query: 243 ARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLR 302
           AR++PES+EGTSEKK +P ++MKSLD K +M ITEALRLQMEVQKRLHEQLEIQRNLQLR
Sbjct: 288 ARYKPESAEGTSEKKLSPIDEMKSLDLKASMGITEALRLQMEVQKRLHEQLEIQRNLQLR 347

Query: 303 IEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSM-ATELDVAK 361
           IEEQGRHLQMMFEQ+++ME+++SKASSSSL++PS    +S    SP    +  +ELD A+
Sbjct: 348 IEEQGRHLQMMFEQQRKMEDDRSKASSSSLDDPSL--PQSNIVQSPGNNKLEVSELDHAR 405

Query: 362 TGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARSEATA 416
           T  + S    A E SS + ++KQKAPE +TGE++DP+DDESG    KR R++  A
Sbjct: 406 T--EISSGGGALEGSSQNGSRKQKAPENRTGEDLDPEDDESGPASAKRPRADEIA 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125730|ref|XP_002319661.1| predicted protein [Populus trichocarpa] gi|222858037|gb|EEE95584.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 252/327 (77%), Gaps = 9/327 (2%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPE 66
           + +SSSRF +++H SSVSP  R S NSPFISQSLRD      TH S SE Q T  I + +
Sbjct: 12  LFSSSSRFSNDMHVSSVSPQGRQSHNSPFISQSLRDRGNFTPTHDSHSEVQSTEFIAYSD 71

Query: 67  ENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEW--WADQLISVEDG 124
           ENKD SW +DPLQD LDF  N   Q G +ES+ G  AS+D AKR +W  WADQLISV+D 
Sbjct: 72  ENKDLSWPVDPLQDLLDFAGNVHVQNGQVESSAGVFASEDHAKRTDWQEWADQLISVDDE 131

Query: 125 PEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMT 184
            EPNWSE+L D N TD+RQK LKPS +I  + P +H    QHQ   + E  AVANPLS  
Sbjct: 132 LEPNWSEILNDVNKTDSRQKELKPSPNISVKQPPIH----QHQTAHSGEVCAVANPLSAA 187

Query: 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR 244
           P  K RMRWTPELHEAFVEAVN+LGG ERATPKGVLK MNVE LTIYHVKSHLQKYR+AR
Sbjct: 188 PTTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKHMNVEGLTIYHVKSHLQKYRSAR 247

Query: 245 HRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIE 304
           ++PESS+   EKK++P E+MKSLD KT+M ITEALRLQMEVQKRLHEQLEIQRNLQLRIE
Sbjct: 248 YKPESSD---EKKTSPIEEMKSLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIE 304

Query: 305 EQGRHLQMMFEQRKQMENEKSKASSSS 331
           EQGRHLQ MFE+++++E++KSKA SSS
Sbjct: 305 EQGRHLQEMFEKQRKIEDDKSKAPSSS 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143569|emb|CBI22322.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/387 (53%), Positives = 258/387 (66%), Gaps = 14/387 (3%)

Query: 30  SQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDP 89
           SQNS FI QS  +   L     S  E Q TP +    E K+NSWC D L+DFLDFPEN P
Sbjct: 27  SQNSLFIPQSSTNGVSLPPISSSGIEIQSTPSVTFSRERKENSWCTDSLKDFLDFPENVP 86

Query: 90  GQTG-LLESNTGDIASDDRAKRIEW--WADQLISVEDGPEPNWSEVLADANVTDARQKVL 146
            Q    +E + G ++ +D AK  +W  WADQ ++ +D  EPNW+ +L D +V D   KVL
Sbjct: 87  IQNNNQVEGSGGGMSYEDCAKTTDWPDWADQFLNDDDSLEPNWNGLLIDVDVPDPESKVL 146

Query: 147 KPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVN 206
           KPS+ + T   ++     QH P  + E  AV N LS  P++K RMRWTPE+HEAFVEAV 
Sbjct: 147 KPSSSVLTHQSEIC----QHHPAQSGEISAVPNSLSPAPSSKPRMRWTPEMHEAFVEAVK 202

Query: 207 RLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPESSEGTSEKKSNPTEDMKS 266
           +LGG ERATPKG+LKLMNVE LTIYHVKSHLQKYRTAR++P+ SEGTS+K      ++ S
Sbjct: 203 QLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRTARYKPKLSEGTSDKNLTSIGEITS 262

Query: 267 LDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSK 326
           LD K +M ITEALRLQMEVQK+LHEQLEIQRNLQLRIEEQ +HLQMMFE++ +ME++K K
Sbjct: 263 LDLKMSMGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQAKHLQMMFEKQGKMEDKKLK 322

Query: 327 ASSSSLENPSAPLFESKQHSSPNETSMATELDVAKTGADTSHVISAPEDSSASLNQKQKA 386
            SSS  + PS+P+    Q S  N TS  +E     +G D        E+SS ++ QKQKA
Sbjct: 323 VSSSIPDEPSSPISNVMQPSPVNHTSKVSEQPHVASGFDA-------EESSQNVEQKQKA 375

Query: 387 PETKTGEEVDPDDDESGHKPVKRARSE 413
           PET   E ++ D+  S   P KRAR+E
Sbjct: 376 PETSGCEFINQDNGMSSTPPTKRARAE 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438007|ref|XP_002270511.1| PREDICTED: uncharacterized protein LOC100244545 [Vitis vinifera]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/431 (52%), Positives = 281/431 (65%), Gaps = 31/431 (7%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPS-EGQPTPLINHP 65
           I +SSS +  ++HFSSVSPHER+S+++PFISQS  +   L   H S S + Q T   ++ 
Sbjct: 78  IFSSSSGYSTDLHFSSVSPHERHSRSAPFISQSSSNGTSLPLAHSSHSGQLQSTASSHYI 137

Query: 66  EENKDNSWCIDPLQDFLDFPENDPGQTGLLESNT--GDIASDDRAKRIEW--WADQLISV 121
           EEN + SWC D L  FLDFP N P Q+  +ES +  G IAS+D +KR +W  WADQLI+ 
Sbjct: 138 EENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASEDLSKRHDWQEWADQLITD 197

Query: 122 EDGPEPNWSEVLADANVTDARQK----VLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAV 177
           +D    NW+E L D NV D   K    V KPS++     PQVHPQ        + E H V
Sbjct: 198 DDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVHPQ----LSAPSGEVHNV 253

Query: 178 ANPLSM--TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKS 235
             P S   T   K RMRWTPELHEAFVEAVN+LGG ERATPKGVLKLM VE LTIYHVKS
Sbjct: 254 VTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKS 313

Query: 236 HLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEI 295
           HLQKYRTAR+RPESSEG+SEK+    E+M SLD KT + ITEALRLQMEVQKRLHEQLEI
Sbjct: 314 HLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEI 373

Query: 296 QRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSM-A 354
           QRNLQLRIEEQGR+LQMMFE++ +   +K K SSS+LENPS+ L      +SP ++ M A
Sbjct: 374 QRNLQLRIEEQGRYLQMMFEKQCKSGIDKLKTSSSALENPSS-LSSDTIPNSPAKSEMEA 432

Query: 355 TELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKT--GEE---VDPD---------DD 400
           +  +  KTG D  +       +   L+++Q A ET+   G E   ++P+           
Sbjct: 433 SHDEHDKTGTDLVNDSKTSSGNPQKLSREQNAIETEALLGSEQIAIEPEAPRNVEQDAAC 492

Query: 401 ESGHKPVKRAR 411
           ES  +P KRA+
Sbjct: 493 ESNSQPSKRAK 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465577|ref|XP_002264025.1| PREDICTED: uncharacterized protein LOC100240786 [Vitis vinifera]

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/382 (52%), Positives = 254/382 (66%), Gaps = 14/382 (3%)

Query: 35  FISQSLRDEARLRSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTG- 93
           FI QS  +   L     S  E Q TP +    E K+NSWC D L+DFLDFPEN P Q   
Sbjct: 81  FIPQSSTNGVSLPPISSSGIEIQSTPSVTFSRERKENSWCTDSLKDFLDFPENVPIQNNN 140

Query: 94  LLESNTGDIASDDRAKRIEW--WADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTD 151
            +E + G ++ +D AK  +W  WADQ ++ +D  EPNW+ +L D +V D   KVLKPS+ 
Sbjct: 141 QVEGSGGGMSYEDCAKTTDWPDWADQFLNDDDSLEPNWNGLLIDVDVPDPESKVLKPSSS 200

Query: 152 IPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGG 211
           + T   ++     QH P  + E  AV N LS  P++K RMRWTPE+HEAFVEAV +LGG 
Sbjct: 201 VLTHQSEIC----QHHPAQSGEISAVPNSLSPAPSSKPRMRWTPEMHEAFVEAVKQLGGS 256

Query: 212 ERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKT 271
           ERATPKG+LKLMNVE LTIYHVKSHLQKYRTAR++P+ SEGTS+K      ++ SLD K 
Sbjct: 257 ERATPKGILKLMNVEGLTIYHVKSHLQKYRTARYKPKLSEGTSDKNLTSIGEITSLDLKM 316

Query: 272 TMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSS 331
           +M ITEALRLQMEVQK+LHEQLEIQRNLQLRIEEQ +HLQMMFE++ +ME++K K SSS 
Sbjct: 317 SMGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQAKHLQMMFEKQGKMEDKKLKVSSSI 376

Query: 332 LENPSAPLFESKQHSSPNETSMATELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKT 391
            + PS+P+    Q S  N TS  +E     +G D        E+SS ++ QKQKAPET  
Sbjct: 377 PDEPSSPISNVMQPSPVNHTSKVSEQPHVASGFDA-------EESSQNVEQKQKAPETSG 429

Query: 392 GEEVDPDDDESGHKPVKRARSE 413
            E ++ D+  S   P KRAR+E
Sbjct: 430 CEFINQDNGMSSTPPTKRARAE 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449583|ref|XP_004142544.1| PREDICTED: protein PHR1-LIKE 1-like [Cucumis sativus] gi|449479716|ref|XP_004155686.1| PREDICTED: protein PHR1-LIKE 1-like [Cucumis sativus]

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 219/414 (52%), Positives = 266/414 (64%), Gaps = 25/414 (6%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPE 66
           + +SSS F ++         ER +Q SPFIS+S  D + L S   S SE Q T +  +  
Sbjct: 53  LFSSSSGFRNDFPLMQPLSQERNAQFSPFISRSANDGSLLPSHGSSHSEVQSTMVTGNLN 112

Query: 67  ENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEW--WADQLISVEDG 124
           EN   SW  D LQD LDF EN P Q G  ++    + SDD+AKR +W  WADQ ISV+D 
Sbjct: 113 ENS-ASWSTDTLQDLLDFSENIPDQNGQDQNVASVLMSDDQAKRNDWPDWADQFISVDDA 171

Query: 125 PEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVANPLSMT 184
            EPNWSE+ +DAN  D + +VLK S+      P    Q  Q   +   EFH+V+N LS +
Sbjct: 172 LEPNWSEIFSDANAGDPKPEVLKSSSANFNAPPN---QTNQVDSLPTVEFHSVSNSLSTS 228

Query: 185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR 244
              + RMRWTPELHEAFVEAVN+LGG E ATPKGVLKLMNVE LTIYHVKSHLQKYRTAR
Sbjct: 229 --TRPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRTAR 286

Query: 245 HRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIE 304
           ++PESSEG+S KK N  E+MK+LD KT+M ITEALRLQMEVQKRLHEQLEIQRNLQLRIE
Sbjct: 287 YKPESSEGSSGKKINHIEEMKTLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIE 346

Query: 305 EQGRHLQMMFEQRKQMENEKSKASSSSLEN-PSAPLFESKQHSSPNETSMATELDVAKTG 363
           EQG++LQ MFEQ+++MEN K K SSS LEN P A           ++     E      G
Sbjct: 347 EQGKYLQEMFEQQRKMEN-KLKTSSSILENMPCA-----------DDQPKNLEQGHDAAG 394

Query: 364 ADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARSEATAF 417
             T +   A ED   + ++K K  E   GEEV+PD+  S     KRA+S+AT  
Sbjct: 395 MSTENAEDAREDGLLAASRKHKGHE---GEEVEPDEGNSS-PDAKRAKSDATVL 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744202|emb|CBI37172.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 219/430 (50%), Positives = 271/430 (63%), Gaps = 52/430 (12%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPE 66
           I +SSS +  ++HFSSVSPHER+S+             +L+ST  S          ++ E
Sbjct: 16  IFSSSSGYSTDLHFSSVSPHERHSRR------------QLQSTASS----------HYIE 53

Query: 67  ENKDNSWCIDPLQDFLDFPENDPGQTGLLESNT--GDIASDDRAKRIEW--WADQLISVE 122
           EN + SWC D L  FLDFP N P Q+  +ES +  G IAS+D +KR +W  WADQLI+ +
Sbjct: 54  ENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASEDLSKRHDWQEWADQLITDD 113

Query: 123 DGPEPNWSEVLADANVTDARQK----VLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHAVA 178
           D    NW+E L D NV D   K    V KPS++     PQVHPQ        + E H V 
Sbjct: 114 DALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVHPQ----LSAPSGEVHNVV 169

Query: 179 NPLSM--TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSH 236
            P S   T   K RMRWTPELHEAFVEAVN+LGG ERATPKGVLKLM VE LTIYHVKSH
Sbjct: 170 TPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSH 229

Query: 237 LQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQ 296
           LQKYRTAR+RPESSEG+SEK+    E+M SLD KT + ITEALRLQMEVQKRLHEQLEIQ
Sbjct: 230 LQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQ 289

Query: 297 RNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSM-AT 355
           RNLQLRIEEQGR+LQMMFE++ +   +K K SSS+LENPS+ L      +SP ++ M A+
Sbjct: 290 RNLQLRIEEQGRYLQMMFEKQCKSGIDKLKTSSSALENPSS-LSSDTIPNSPAKSEMEAS 348

Query: 356 ELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKT--GEE---VDPD---------DDE 401
             +  KTG D  +       +   L+++Q A ET+   G E   ++P+           E
Sbjct: 349 HDEHDKTGTDLVNDSKTSSGNPQKLSREQNAIETEALLGSEQIAIEPEAPRNVEQDAACE 408

Query: 402 SGHKPVKRAR 411
           S  +P KRA+
Sbjct: 409 SNSQPSKRAK 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571218|ref|XP_002526559.1| transcription factor, putative [Ricinus communis] gi|223534120|gb|EEF35837.1| transcription factor, putative [Ricinus communis]

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 210/418 (50%), Positives = 270/418 (64%), Gaps = 19/418 (4%)

Query: 7   ISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEG--QPTPLINH 64
           + +SS+ F  ++ +SSVSP E++S+N+PFISQS  + A L     SP  G  Q T    +
Sbjct: 77  LFSSSAGFSTDLQYSSVSPQEKHSRNTPFISQSPTNVAALTLPQ-SPHSGLLQCTASSQY 135

Query: 65  PEENKDNSWCIDPLQDFLDFPENDPGQTGLLESN--TGDIASDDRAKRIEW--WADQLIS 120
            +EN   SWC + L  FLDFP N   Q   +ESN  TG I S++ +KR +W  WADQLI+
Sbjct: 136 DKENS-ASWCPESLPGFLDFPVNSHVQNNQIESNSCTGAITSEEFSKRNDWQEWADQLIT 194

Query: 121 VEDGPEPNWSEVLADANVTDARQK----VLKPSTDIPTQHPQVHPQGQQHQPVSNEEFHA 176
            +D    NW+++L D +  +   K    V KP +DI    PQVH    Q  P  + +   
Sbjct: 195 DDDALTSNWNDLLVDNSAPEMEPKMAYQVSKPPSDISAHQPQVH----QQLPAPSIDIRP 250

Query: 177 VANPLSM--TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVK 234
           V  P S   T  +K RMRWTPELHEAFV+AVN+LGG ERATPKGVLKLM VE LTIYHVK
Sbjct: 251 VLTPTSSVNTAPSKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 310

Query: 235 SHLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLE 294
           SHLQKYRTAR+RP+S EG+SE+K  P E++ SLD KT + ITEALRLQMEVQKRLHEQLE
Sbjct: 311 SHLQKYRTARYRPDSLEGSSEQKLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLE 370

Query: 295 IQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSM- 353
           IQRNLQLRIEEQGR+LQMMFE++ +   +  KASSS++ENPS+ L     H S  +  M 
Sbjct: 371 IQRNLQLRIEEQGRYLQMMFEKQCKSGTDVLKASSSAVENPSSALSSDAVHDSSGKNEME 430

Query: 354 ATELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRAR 411
           A+++D      +T    S  E+ S   N+K+KA + +     +PD+ ES  +  KR R
Sbjct: 431 ASKVDHGNAITNTDDTKSKLEERSQDPNEKKKALQIEASGNPEPDNGESNSQSAKRPR 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572282|ref|XP_003554298.1| PREDICTED: uncharacterized protein LOC100810560 [Glycine max]

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 211/414 (50%), Positives = 272/414 (65%), Gaps = 17/414 (4%)

Query: 9   ASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFSPSEGQPTPLINHPEEN 68
           +SS  +  ++H SS S HE+  +N+ FISQSL + A L  ++ S SE  P+   + P  N
Sbjct: 78  SSSPGYSTDLHHSSFSSHEKQPRNTHFISQSLSNMASLPLSYSSNSEPIPS-TTSTPYSN 136

Query: 69  KDN-SWCIDPLQDFLDFPENDP-GQTGLLESNTGDIASDDRAKRIEW--WADQLISVEDG 124
            ++ SW  D L  FLDFP N   G + +  S+   +A+++ +KR +W  WADQLIS  D 
Sbjct: 137 GNSVSWHTDSLPSFLDFPANTSIGNSQVESSDCNIMATEEYSKRNDWQEWADQLISDVDP 196

Query: 125 PEPNWSEVLADANVTDARQKVLKPSTDIPTQHPQVHPQGQQHQ--PVSNEEFHAVANPLS 182
              NW+++LAD N+ D   KV K S+ +P  H     Q Q HQ  P S+ E      P S
Sbjct: 197 LTSNWNDLLAD-NIQDLEPKVAKSSSQLPIGH-----QSQSHQQLPASSGENRVGVAPTS 250

Query: 183 MT---PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQK 239
            T   PA K RMRWTPELHEAFVEAVN+LGG ERATPKGVLKLM V+ LTIYHVKSHLQK
Sbjct: 251 STNSAPA-KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVDGLTIYHVKSHLQK 309

Query: 240 YRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNL 299
           YRTAR+RPESSEG +EKK +P E+M SLD KT + ITEALRLQMEVQKRLHEQLEIQRNL
Sbjct: 310 YRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNL 369

Query: 300 QLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSMATELDV 359
           QLRIEEQGR+LQMMFE++ +   E  KASSS++E+ S    ++ + S     S   ++D 
Sbjct: 370 QLRIEEQGRYLQMMFEKQCKPGIETFKASSSAIESQSGVSSDAIKDSPAKTESETIKVDH 429

Query: 360 AKTGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPVKRARSE 413
            K+GAD ++ I+  E+S+  + +KQ APE++  E  +    E   K  KR R+E
Sbjct: 430 CKSGADQANGITTVEESALEVGEKQDAPESQASENPEQHASEDSAKASKRPRTE 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.747	0.772	0.488	7.5e-73
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.845	0.816	0.464	6.7e-72
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.697	0.728	0.472	4.2e-65
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.386	0.44	0.552	2.9e-46
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.538	0.804	0.439	6.4e-44
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.655	0.705	0.4	1e-43
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.489	0.465	0.445	4.8e-39
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.358	0.380	0.437	2.7e-34
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.381	0.413	0.395	5.5e-32
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.353	0.421	0.425	1e-29

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 169/346 (48%), Positives = 223/346 (64%)

Query:     1 MSNP---QQISASSSR---FPDNIHFSSVS---PHERYSQNSPFISQSLRDEARLRSTHF 51
             M+NP   Q +S  +S    FP +  + +VS   PH R  QN P +S   RD   ++    
Sbjct:    44 MNNPVPCQSVSGGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDRLAMQDC-- 101

Query:    52 SPSEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASD-DRAKR 110
              P   Q + + +HP+E       IDPL +F DF ++ P Q    ES+   + S  +  K+
Sbjct:   102 -PLIAQSSLINHHPQE------FIDPLHEFFDFSDHVPVQNLQAESSGVRVDSSVELHKK 154

Query:   111 IEW--WADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIPTXXXXXXXXXXXXXX 168
              EW  WADQLISV+DG EPNWSE+L D++  +   ++  P  D+P               
Sbjct:   155 SEWQDWADQLISVDDGSEPNWSELLGDSSSHNPNSEIPTPFLDVPRLDITANQQQQMV-- 212

Query:   169 XSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENL 228
              S+E+  +  N  S    +K RMRWTPELHEAFVEAVN+LGG ERATPK VLKL+N   L
Sbjct:   213 -SSEDQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGL 271

Query:   229 TIYHVKSHLQKYRTARHRPESSEGTSE---KKSNPTEDMKSLDTKTTMSITEALRLQMEV 285
             TIYHVKSHLQKYRTAR++PE+SE T E   KK    ED+KSLD KT++ IT+ALRLQMEV
Sbjct:   272 TIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEV 331

Query:   286 QKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSS 331
             QKRLHEQLEIQR+LQL+IE+QGR+LQMMFE+++++++ KS +S +S
Sbjct:   332 QKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEAS 377

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 187/403 (46%), Positives = 242/403 (60%)

Query:     2 SNPQQISASSSRFPDNIHFSSVSPHERYSQNSPFISQSLRDEARLRSTHFS--------P 53
             S+   + +SSS F + ++ SS S      Q  P +S   RD  R+   H S        P
Sbjct:    58 SSGGNLFSSSSGFCNGVYVSSSS------QARPSVSTVPRD--RITVAHVSGEGQRQECP 109

Query:    54 SEGQPTPLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEW 113
              E     LIN P+E K  +W  D ++ F DFP  DP Q     S T  ++S +   + EW
Sbjct:   110 VETHSLQLINQPQEQKIMTWSSDQIRGFFDFPVPDP-QAA--SSRTM-VSSKEVLSKCEW 165

Query:   114 --WADQLISVEDGPEPNWSEVLADANVTDARQKVLKPSTDIPTXXXXXXXXXXXXXXXSN 171
               WADQLIS +D  EPNWSE+L D NV +   K+   S+DI                 S 
Sbjct:   166 PDWADQLIS-DDSLEPNWSELLGDPNVLNLYSKIETQSSDI--ARQEIVFRNQHQVDPSM 222

Query:   172 EEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIY 231
             E F+A + P S +  +K RMRWTPELHEAFVEA+N+LGG ERATPK VLKL+N   LT+Y
Sbjct:   223 EPFNAKSPPAS-SMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVY 281

Query:   232 HVKSHLQKYRTARHRPESSEGTSE---KKSNPTEDMKSLDTKTTMSITEALRLQMEVQKR 288
             HVKSHLQKYRTAR++PE S+ T E   K     ED+KSLD KT++ ITEALRLQM+VQK+
Sbjct:   282 HVKSHLQKYRTARYKPELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQ 341

Query:   289 LHEQLEIQRNLQLRIEEQGRHLQMMFE-QRKQMENEKSKASSSSLE--NPSAP---LFES 342
             LHEQLEIQR+LQL+IEEQGR+LQMM E Q+K  EN+K   SSSS+   +PSAP   L + 
Sbjct:   342 LHEQLEIQRSLQLQIEEQGRYLQMMIEKQQKMQENKKDSTSSSSMPEADPSAPSPNLSQP 401

Query:   343 KQHSSPN-ETSMATELDVAKTGADTSHVISAPEDSSASLNQKQ 384
               H + N E S+  +L   + G+ T   +   E +S + N+K+
Sbjct:   402 FLHKATNSEPSITQKL---QNGSST---MDQSESTSGTSNRKR 438

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 154/326 (47%), Positives = 194/326 (59%)

Query:    47 RSTHFSPSEGQPTPLINHPEENKDNSWCIDPLQD-FLDFPENDPGQTGLLESNTGDIAS- 104
             +  H++ S       +  P  N D++WC D L   FLDF E +P      +   G IA+ 
Sbjct:    87 KQQHYTGSSSNNA--VQTPSNN-DSAWCHDSLPGGFLDFHETNPAIQNNCQIEDGGIAAA 143

Query:   105 -DDRAKRIEW--WADQLISVEDGP--EPNWSEVLADANV-TDAR-QKVLK-PSTDIPTXX 156
              DD  KR +W  WAD LI+ +D P    NW+++L + N  +D++ QK L+ P   I    
Sbjct:   144 FDDIQKRSDWHEWADHLIT-DDDPLMSTNWNDLLLETNSNSDSKDQKTLQIPQPQIVQQQ 202

Query:   157 XXXXXXXXXXXXXSNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATP 216
                          S+          S     K+RMRWTPELHEAFVEAVN LGG ERATP
Sbjct:   203 PSPSVELRPVSTTSSN---------SNNGTGKARMRWTPELHEAFVEAVNSLGGSERATP 253

Query:   217 KGVLKLMNVENLTIYHVKSHLQKYRTARHRPESSE-GTSEKKSNPTEDMKSLDTKTTMSI 275
             KGVLK+M VE LTIYHVKSHLQKYRTAR+RPE SE G+ E+K  P E + SLD K  + I
Sbjct:   254 KGVLKIMKVEGLTIYHVKSHLQKYRTARYRPEPSETGSPERKLTPLEHITSLDLKGGIGI 313

Query:   276 TEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSL--- 332
             TEALRLQMEVQK+LHEQLEIQRNLQLRIEEQG++LQMMFE++     + + ++S S    
Sbjct:   314 TEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQNSGLTKGTASTSDSAAKS 373

Query:   333 ENPSAPLFESKQHSSPNETSMATELD 358
             E       +SK+     ET    EL+
Sbjct:   374 EQEDKKTADSKEVPE-EETRKCEELE 398

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 94/170 (55%), Positives = 121/170 (71%)

Query:   182 SMTP--ANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQK 239
             SM P   NK+R+RWT +LHE FVE VNRLGG ++ATPK +LK M+ + LTI+HVKSHLQK
Sbjct:   184 SMAPNCVNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQK 243

Query:   240 YRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNL 299
             YR A++ PES EG  EK++   E +  LDT+T + I EAL+LQ++VQ+ LHEQLEIQRNL
Sbjct:   244 YRIAKYMPESQEGKFEKRACAKE-LSQLDTRTGVQIKEALQLQLDVQRHLHEQLEIQRNL 302

Query:   300 QLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPN 349
             QLRIEEQG+ L+MM EQ  Q +N++S          S  L +   HS P+
Sbjct:   303 QLRIEEQGKQLKMMMEQ--QQKNKESLLKKLPDAEASLSLLDPHIHSPPS 350

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 108/246 (43%), Positives = 153/246 (62%)

Query:   186 ANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARH 245
             A+K R+RWT ELHE FV+AV +LGG +RATPKGVL++M V+ LTIYHVKSHLQKYR A++
Sbjct:    13 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 72

Query:   246 RPESS-EGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIE 304
              P+SS EG    K    + +  LD  + M ITEAL+LQMEVQKRLHEQLE+QR LQLRIE
Sbjct:    73 LPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIE 132

Query:   305 EQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSPNETSMATELDVAKTGA 364
              QG++L+ + E+++++        S  L  PSAP+      ++P  TS +   D  K+G 
Sbjct:   133 AQGKYLKKIIEEQQRL--------SGVLGEPSAPVTGDSDPATPAPTSESPLQD--KSGK 182

Query:   365 DTSHVISAPEDSSASLNQKQKAPETKTGEEVDPDDDESGHKPV-KRAR--SEATAFSPKS 421
             D     S   D S S  ++   P++  G  +   D+ +G + + K+ R    A  ++P  
Sbjct:   183 DCGPDKSLSVDESLSSYREPLTPDS--GCNIGSPDESTGEERLSKKPRLVRGAAGYTPDI 240

Query:   422 ALGNTL 427
              +G+ +
Sbjct:   241 VVGHPI 246

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 122/305 (40%), Positives = 160/305 (52%)

Query:    60 PLINHPEENKDNSWCIDPLQDFLDFPENDPGQTGLLESNTGDIASDDRAKRIEWWADQLI 119
             P  N PE      W   PL     FP   P    ++E   G I    +   +  W D LI
Sbjct:   103 PGFNCPETT---DWIPSPLPHIY-FPSGSPNL--IMED--GVIDEIHKQSDLPLWYDDLI 154

Query:   120 SVEDGPEPN--WSEVLADANVTDA--------RQKVLKPSTDIPTXXXXXXXXXXXXXXX 169
             + ++ P  +    ++L D N   A        + ++ +P   +                 
Sbjct:   155 TTDEDPLMSSILGDLLLDTNFNSASKVQQPSMQSQIQQPQAVLQQPSSCVELRPLDRTVS 214

Query:   170 SNEEFHAVANPLSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLT 229
             SN   ++ +N  +   A K RMRWTPELHE FV+AVN+LGG   ATPKGVLK M VE LT
Sbjct:   215 SNSNNNSNSN--NAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLT 272

Query:   230 IYHVKSHLQKYRTARHRPESSEGTSEKKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRL 289
             I+HVKSHLQKYRTA++ P  SEG+ E +  P E + S DTK  + ITE LR+QME QK+L
Sbjct:   273 IFHVKSHLQKYRTAKYIPVPSEGSPEARLTPLEQITSDDTKRGIDITETLRIQMEHQKKL 332

Query:   290 HEQLEIQRNLQLRIEEQGRHLQMMFEQRKQM---ENEKSKASSSSLENPSAPLFESKQHS 346
             HEQLE  R +QLRIEEQG+ L MM E++        +  K S+ + EN S    ES +  
Sbjct:   333 HEQLESLRTMQLRIEEQGKALLMMIEKQNMGFGGPEQGEKTSAKTPENGSEES-ESPRPK 391

Query:   347 SP-NE 350
              P NE
Sbjct:   392 RPRNE 396

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 102/229 (44%), Positives = 138/229 (60%)

Query:   178 ANPLSMTPAN-KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSH 236
             ++P   + AN KSRMRWTPELHE+FV+AV +L G E+ATPK V KLMNVE LTIYHVKSH
Sbjct:   230 SHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSH 289

Query:   237 LQKYRTARHRPESSEGTSEKKSNPTEDMK------SLDTKT--TMSITEALRLQMEVQKR 288
             LQKYR A++ PE  E   EK+++ +E+ K        D K    + +TEALR+QMEVQK+
Sbjct:   290 LQKYRLAKYMPEKKE---EKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQ 346

Query:   289 LHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFESKQHSSP 348
             LHEQLE+QR LQLRIEE  ++L+ M E++++     S +S + L      + +S+  S  
Sbjct:   347 LHEQLEVQRVLQLRIEEHAKYLEKMLEEQRKTGRWISSSSQTVLSPSDDSIPDSQNMSKT 406

Query:   349 NETSMATELDVAKTGADTSHVISAPEDSSASLNQKQKAPETKTGEEVDP 397
               +S    L      ++T       ED      QK++  E    E  DP
Sbjct:   407 KASSPQPPLPAENKASET-------EDDKCESPQKRRRLEN-IAESEDP 447

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 74/169 (43%), Positives = 115/169 (68%)

Query:   188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRP 247
             K R++WTP+LHE FVEAVN+LGGG++ATPK ++K+M +  LT+YH+KSHLQKYR +++  
Sbjct:    45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   248 ESSEGTSEKKS-------NPTE------DMKSLDTKTTMS--ITEALRLQMEVQKRLHEQ 292
               +  +  K S       NP E      +  S+  + +M+  I++AL++Q+EVQ+RLHEQ
Sbjct:   105 GQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQ 164

Query:   293 LEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFE 341
             LE+QR+LQLRIE QG++LQ + E+ ++    ++   ++ +E   A L E
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSILEKAQETLGRQN-LGAAGIEATKAQLSE 212

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
 Identities = 72/182 (39%), Positives = 116/182 (63%)

Query:   188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRP 247
             K R++WTP+LHE F+EAVN+LGG ++ATPK ++K+M +  LT+YH+KSHLQKYR +++  
Sbjct:    45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   248 ESSEGT---------SEKKSNPTEDMKSLDTKT------TMSITEALRLQMEVQKRLHEQ 292
               +  +          E+K+   ++++S +            I EAL++Q+EVQ+RLHEQ
Sbjct:   105 GQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQ 164

Query:   293 LEIQRNLQLRIEEQGRHLQMMFEQRKQMENEKSKASSSSLENPSAPLFE--SKQHSS-PN 349
             LE+QR+LQLRIE QG++LQ + E+ ++    ++   ++ +E     L E  SK  +  PN
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQN-LGAAGIEAAKVQLSELVSKVSAEYPN 223

Query:   350 ET 351
              +
Sbjct:   224 SS 225

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 66/155 (42%), Positives = 105/155 (67%)

Query:   181 LSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 240
             L +T   K R+RWT ELHE FV+AV +LGG ++ATPK ++++M V+ LT+YH+KSHLQK+
Sbjct:    27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query:   241 RTAR--HRPESSEGTSE-KKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQR 297
             R  +  H+      T E  +++  +  +++ + + M       +QMEVQ+RLHEQLE+QR
Sbjct:    87 RLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQR 146

Query:   298 NLQLRIEEQGRHLQMMFEQRKQ-MENEKSKASSSS 331
             +LQLRIE QG+++Q + E+  Q +  E   A++++
Sbjct:   147 HLQLRIEAQGKYMQSILERACQTLAGENMAAATAA 181

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	5e-21
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	2e-20
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	5e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 85.5 bits (212), Expect = 5e-21
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 242
           K R+ WT +LH+ F++AV +LGG + ATPK +L+LM V+ LT   V SHLQKYR 
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 83.8 bits (208), Expect = 2e-20
 Identities = 32/48 (66%), Positives = 42/48 (87%)

Query: 273 MSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQM 320
           M ITEALRLQMEVQ+RLHEQLE+QR+LQ+RIE QG++LQ + E+ ++ 
Sbjct: 2   MQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKT 49

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRP 247
           K+++ WTPELH  FV AV +LG  E+A P  +L+LM V+ LT +++ SHLQKYR+ R   
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLGV-EKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL 293

Query: 248 ESSEGTS 254
            + E  +
Sbjct: 294 AAREAEA 300

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYR 241
           R  WTPE  E  +EAV + G G       + K +     T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.9
PLN03162	526	golden-2 like transcription factor; Provisional	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.16
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	91.25
smart00426	68	TEA TEA domain.	88.39

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.90  E-value=2.2e-24  Score=164.20  Aligned_cols=50  Identities=64%  Similarity=0.891  Sum_probs=48.1

Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014309          272 TMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQME  321 (427)
Q Consensus       272 ~~~i~EaLr~QmEVQkrLhEQLEvQR~LQlRIEaQGKyLq~~leka~k~~  321 (427)
                      |++|+||||+||||||||||||||||+||+|||||||||++|||+|+++.
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~   50 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL   50 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.90  E-value=4.2e-24  Score=214.89  Aligned_cols=64  Identities=47%  Similarity=0.762  Sum_probs=60.4

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccCCCC
Q 014309          185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHRPES  249 (427)
Q Consensus       185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~s  249 (427)
                      ..+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~  295 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA  295 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence            4789999999999999999999999 699999999999999999999999999999999886543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=2e-21  Score=150.11  Aligned_cols=56  Identities=54%  Similarity=0.865  Sum_probs=54.4

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhh
Q 014309          188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTA  243 (427)
Q Consensus       188 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  243 (427)
                      |+|++||+|+|++|++||+.||+.+.|+||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.16  E-value=0.00097  Score=48.84  Aligned_cols=48  Identities=31%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhH
Q 014309          190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYR  241 (427)
Q Consensus       190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR  241 (427)
                      |..||+|=+..|++||.++|.-   .-+.|.+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999932   5788999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=91.25  E-value=0.41  Score=37.42  Aligned_cols=34  Identities=38%  Similarity=0.550  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014309          287 KRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQME  321 (427)
Q Consensus       287 krLhEQLEvQR~LQlRIEaQGKyLq~~leka~k~~  321 (427)
                      .-|+.|+||||.|.=.+|.| |-||.-+|.+.+-.
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            56889999999999999999 67888888777654

>smart00426 TEA TEA domain

Probab=88.39  E-value=0.51  Score=38.84  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCCch-hHhhh---cC-----------CCCc--cHHHHHHHHHH
Q 014309          192 RWTPELHEAFVEAVNRLGGGERATPK-GVLKL---MN-----------VENL--TIYHVKSHLQK  239 (427)
Q Consensus       192 rWT~ELH~rFV~AV~qLGG~~kAtPK-~IL~l---M~-----------v~gL--T~~hVkSHLQK  239 (427)
                      .|.++|-..|++|+...-  ...+=| .++..   .|           ..|.  |..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998765  222222 12111   11           2443  77889999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	427
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		3e-10

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTA 243
           T   K R+ WT ELH  F+ AV+ LG  ERA PK +L LMNV+ LT  +V SHLQK+R A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	7e-25

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 95.8 bits (238), Expect = 7e-25
 Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTA 243
           T   K R+ WT ELH  F+ AV+ LG  ERA PK +L LMNV+ LT  +V SHLQK+R A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 244 RHRP 247
             + 
Sbjct: 60  LKKV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	88.23
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	87.05
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	86.39
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	85.07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=5.9e-29  Score=195.48  Aligned_cols=61  Identities=52%  Similarity=0.803  Sum_probs=58.3

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014309          185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR  246 (427)
Q Consensus       185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~  246 (427)
                      +.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+...|
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999 699999999999999999999999999999998765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=88.23  E-value=1.3  Score=35.35  Aligned_cols=50  Identities=14%  Similarity=0.116  Sum_probs=40.3

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014309          185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY  240 (427)
Q Consensus       185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  240 (427)
                      .....+-.||+|=+++|++||..+|+-    =+.|-+.|  ++=|..+++.|-++|
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHh
Confidence            344557789999999999999999943    35666666  478999999998887

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.05  E-value=2  Score=32.96  Aligned_cols=54  Identities=24%  Similarity=0.402  Sum_probs=42.5

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014309          187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR  246 (427)
Q Consensus       187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~  246 (427)
                      ...+-.||+|=++.|+++|.++|-    .=+.|-+.  ++|=|..+|+.|-++|-..+.+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~~   59 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKVK   59 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHh
Confidence            455668999999999999999993    33556555  4789999999999998655433

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=86.39  E-value=0.72  Score=37.91  Aligned_cols=58  Identities=28%  Similarity=0.396  Sum_probs=38.2

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhh---hc-C-----------C--CCccHHHHHHHHHHhHhhccC
Q 014309          187 NKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLK---LM-N-----------V--ENLTIYHVKSHLQKYRTARHR  246 (427)
Q Consensus       187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~---lM-~-----------v--~gLT~~hVkSHLQKYRl~~~~  246 (427)
                      ++..-+|.++|-..|++|+...-=....  |-+|.   .| |           .  .-=|+.+|.||||.-|..+.+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            4566789999999999999887611122  22231   11 1           1  334888999999987765443

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.07  E-value=2  Score=32.98  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=41.7

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCc---hhHhhhcCCCCccHHHHHHHHHHhHhhcc
Q 014309          187 NKSRMRWTPELHEAFVEAVNRLGGGERATP---KGVLKLMNVENLTIYHVKSHLQKYRTARH  245 (427)
Q Consensus       187 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~~~  245 (427)
                      ...+-.||+|=+++|+++|..+|. +...|   +.|-+.|  +|=|..+|+.|-++|-....
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence            344558999999999999999992 22222   3444444  68999999999999976544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	427
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-21
d2dn3a1	140	a.1.1.2 (A:2-141) Hemoglobin, alpha-chain {Human (	0.003

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.4 bits (211), Expect = 1e-21
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 184 TPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTA 243
           T   K R+ WT ELH  F+ AV+ LG  ERA PK +L LMNV+ LT  +V SHLQK+R A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 244 RHR 246
             +
Sbjct: 60  LKK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	427
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	91.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	83.88

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1.8e-26  Score=179.28  Aligned_cols=61  Identities=52%  Similarity=0.803  Sum_probs=58.0

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014309          185 PANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR  246 (427)
Q Consensus       185 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~  246 (427)
                      ..+|+|++||+|||++||+||++||+ ++|+||.|+++|+|+|||+.||+|||||||+...+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999986 89999999999999999999999999999998765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.15  Score=36.61  Aligned_cols=51  Identities=25%  Similarity=0.430  Sum_probs=40.5

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHhHhhccC
Q 014309          190 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTARHR  246 (427)
Q Consensus       190 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~  246 (427)
                      .++||+|=++.|++||.+.|.-    =..|-++|  +|=|..+|++|-++|-....+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR----WTKISKLI--GSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC----HHHHHHHH--SSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcch----HHHHHHHc--CCCCHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999942    34555555  588999999999988655443

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.88  E-value=1  Score=30.75  Aligned_cols=44  Identities=30%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCCchhHhhhcCCCCccHHHHHHHHHHh
Q 014309          192 RWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY  240 (427)
Q Consensus       192 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  240 (427)
                      .||.|=+.+|++||.+.|-   .-=+.|-+.|+  |=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~---~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGF---GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC---ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            3999999999999999991   12345556665  66999999998887