Query 014310
Match_columns 427
No_of_seqs 187 out of 934
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3E-51 1E-55 377.3 14.3 152 52-218 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 3E-51 1E-55 376.2 12.3 153 52-219 11-168 (171)
3 2f9y_B Acetyl-coenzyme A carbo 35.6 15 0.00051 35.9 2.0 45 33-77 21-66 (304)
4 3h0g_L DNA-directed RNA polyme 34.0 16 0.00056 28.2 1.6 16 31-46 33-48 (63)
5 4ayb_P DNA-directed RNA polyme 29.6 18 0.0006 26.7 1.0 13 34-46 21-33 (48)
6 1e8j_A Rubredoxin; iron-sulfur 29.5 27 0.00093 25.7 2.1 28 37-65 4-31 (52)
7 2v3b_B Rubredoxin 2, rubredoxi 28.5 22 0.00076 26.5 1.5 28 37-65 4-31 (55)
8 2kn9_A Rubredoxin; metalloprot 22.0 34 0.0012 27.6 1.5 30 35-65 26-55 (81)
9 2jz8_A Uncharacterized protein 21.8 63 0.0022 26.5 3.1 34 34-67 46-79 (87)
10 1dx8_A Rubredoxin; electron tr 21.7 40 0.0014 26.3 1.8 28 36-64 7-34 (70)
11 4rxn_A Rubredoxin; electron tr 21.2 27 0.00093 26.0 0.7 28 37-65 4-31 (54)
12 1s24_A Rubredoxin 2; electron 21.2 40 0.0014 27.6 1.8 29 35-64 34-62 (87)
13 1yk4_A Rubredoxin, RD; electro 21.0 26 0.0009 25.8 0.6 27 37-64 3-29 (52)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3e-51 Score=377.30 Aligned_cols=152 Identities=29% Similarity=0.501 Sum_probs=129.9
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCC-CceEEEEecccc
Q 014310 52 AHEWPGLPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDG-SAAHFFYRAIKA 130 (427)
Q Consensus 52 ~~~~~~LPpGfRF~PTDeELI~hYL~kKi~G~~~p~Pli~~~Ip~vD~d~~Iy~~ePwdLPg~~~dG-~~wYFFs~r~kk 130 (427)
.+..++|||||||+|||||||.|||++|+.|. +++..+|+++| ||.+|||+||+.+..| .+||||+++.++
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~----~~~~~~I~evD----vy~~~Pw~Lp~~~~~g~~ewYFFs~r~~k 80 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQ----RLPVPIIAEVD----LYKFDPWDLPERALFGAREWYFFTPRDRK 80 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTC----CCSSSCCEECC----GGGSCGGGSGGGCSSCSSEEEEEEECCC-
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCC----CCCcCeeeecc----cccCCchhhhhhhccCCceEEEEeccccc
Confidence 45678999999999999999999999999997 44567899988 8999999999987655 479999999999
Q ss_pred cCCCCccceeccCCCCCccEEeecCCCceeeeCCeeeEEEEEEEeeeeccCCCCCCCcCeEEEEEEeCCCCC--------
Q 014310 131 YSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEED-------- 202 (427)
Q Consensus 131 y~~G~R~rR~~~~G~~g~G~Wk~tGk~K~I~~~G~vVG~KKtLvFY~gr~~g~kg~KT~WVMHEY~L~~~~~-------- 202 (427)
|++|.|++|+++ .||||+||++++|..+|.+||+||+||||.+++ +++.||+||||||+|.....
T Consensus 81 y~~g~R~nR~t~-----~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~--p~g~kT~WvMhEY~L~~~~~~~~~~~~~ 153 (174)
T 3ulx_A 81 YPNGSRPNRAAG-----NGYWKATGADKPVAPRGRTLGIKKALVFYAGKA--PRGVKTDWIMHEYRLADAGRAAAGAKKG 153 (174)
T ss_dssp ----CCSCEEET-----TEEEEECSCCEEECCSSSCCEEEEEEEEEESST--TSCEEEEEEEEEEEECSCC---------
T ss_pred cCCCCCceeecC-----CceEccCCCCcEEeeCCcEEEEEEEEEEecCCC--CCCCcCCeEEEEEEeCCCCCcccccccC
Confidence 999999999984 479999999999999999999999999999986 57899999999999997642
Q ss_pred -CCCCCEEEEEEEeeCC
Q 014310 203 -EKDRDYVISKISYQQQ 218 (427)
Q Consensus 203 -~~~~e~VLCKIf~K~~ 218 (427)
...++|||||||+|+.
T Consensus 154 ~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 154 SLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp --CCSSEEEEEEEESCC
T ss_pred CCCCCCEEEEEEEEcCC
Confidence 1357999999999876
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3e-51 Score=376.24 Aligned_cols=153 Identities=29% Similarity=0.485 Sum_probs=126.6
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCC-CceEEEEecccc
Q 014310 52 AHEWPGLPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDG-SAAHFFYRAIKA 130 (427)
Q Consensus 52 ~~~~~~LPpGfRF~PTDeELI~hYL~kKi~G~~~p~Pli~~~Ip~vD~d~~Iy~~ePwdLPg~~~dG-~~wYFFs~r~kk 130 (427)
...++.|||||||+|||||||.|||++|+.|. |++..+|+++| ||++|||+||+.+..| .+||||+++.++
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~----~~~~~~I~e~D----iy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k 82 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGY----DFSLQLIAEID----LYKFDPWVLPNKALFGEKEWYFFSPRDRK 82 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTC----CCSSCCSEECC----GGGSCGGGHHHHSSSCSSEEEEEEECCC-
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCC----CCCCCeEeecc----cccCChhHhhchhhcCCccEEEEeccccc
Confidence 35578999999999999999999999999997 45568899988 8999999999987554 589999999999
Q ss_pred cCCCCccceeccCCCCCccEEeecCCCceeeeCCeeeEEEEEEEeeeeccCCCCCCCcCeEEEEEEeCCCCC----CCCC
Q 014310 131 YSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEED----EKDR 206 (427)
Q Consensus 131 y~~G~R~rR~~~~G~~g~G~Wk~tGk~K~I~~~G~vVG~KKtLvFY~gr~~g~kg~KT~WVMHEY~L~~~~~----~~~~ 206 (427)
|++|.|++|+++ .||||+||++++|..+|.+||+||+||||.+++ +++.||+|+||||+|..... ...+
T Consensus 83 ~~~g~R~~R~t~-----~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~--p~g~kT~WvMhEY~l~~~~~~~~~~~~~ 155 (171)
T 1ut7_A 83 YPNGSRPNRVAG-----SGYWKATGTDKIISTEGQRVGIKKALVFYIGKA--PKGTKTNWIMHEYRLIEPSRRNGSTKLD 155 (171)
T ss_dssp ------CCEEET-----TEEEEEEEEEEEEEETTEEEEEEEEEEEEESST--TSCEEEEEEEEEEEECCCC--------C
T ss_pred cCCCCcccccCC-----CCEEeccCCCceEEecCcEEEEEEEEEEEcCcC--CCCCcCCeEEEEEEcCCCccccCcccCC
Confidence 999999999984 479999999999999999999999999999986 57899999999999997652 2468
Q ss_pred CEEEEEEEeeCCc
Q 014310 207 DYVISKISYQQQQ 219 (427)
Q Consensus 207 e~VLCKIf~K~~~ 219 (427)
+|||||||+|..+
T Consensus 156 ~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 156 DWVLCRIYKKQSS 168 (171)
T ss_dssp CEEEEEEEECC--
T ss_pred CEEEEEEEEcCCC
Confidence 9999999999874
No 3
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=35.57 E-value=15 Score=35.94 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCCcccCCCCcceecCCCcCCCCCCCC-CCceeCCChHHHHHHHHH
Q 014310 33 SNPTKACPNCHHVIDNSDVAHEWPGLP-RGVKFDPSDQEIIWHLLA 77 (427)
Q Consensus 33 ~~~~~~cp~c~~~id~~~v~~~~~~LP-pGfRF~PTDeELI~hYL~ 77 (427)
.+-+..||+|+..|-..++....--.| -|++|.++-.|.|..++-
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~D 66 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLD 66 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHCC
Confidence 356889999999998877544334456 899999999999998663
No 4
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=33.99 E-value=16 Score=28.19 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=11.8
Q ss_pred ccCCCcccCCCCccee
Q 014310 31 WKSNPTKACPNCHHVI 46 (427)
Q Consensus 31 ~~~~~~~~cp~c~~~i 46 (427)
.+.+....||+|+|+|
T Consensus 33 l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 33 IQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCSSSCCCCSSSCCCC
T ss_pred cCCCCceECCCCCcEE
Confidence 3455678888888885
No 5
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.63 E-value=18 Score=26.70 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=11.4
Q ss_pred CCcccCCCCccee
Q 014310 34 NPTKACPNCHHVI 46 (427)
Q Consensus 34 ~~~~~cp~c~~~i 46 (427)
-|...||.||++|
T Consensus 21 lP~IrCpyCGyri 33 (48)
T 4ayb_P 21 LPGVRCPYCGYKI 33 (48)
T ss_dssp CSSSCCTTTCCSC
T ss_pred CCCcccCccCcEE
Confidence 3889999999986
No 6
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.49 E-value=27 Score=25.70 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=20.2
Q ss_pred ccCCCCcceecCCCcCCCCCCCCCCceeC
Q 014310 37 KACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (427)
Q Consensus 37 ~~cp~c~~~id~~~v~~~~~~LPpGfRF~ 65 (427)
-.|+.|+++.|-.. -...-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~-Gdp~~gi~pGt~f~ 31 (52)
T 1e8j_A 4 YVCTVCGYEYDPAK-GDPDSGIKPGTKFE 31 (52)
T ss_dssp EECSSSCCCCCTTT-CCTTTTCCSSCCTT
T ss_pred EEeCCCCeEEcCCc-CCcccCcCCCCchH
Confidence 47999999987532 44556788888764
No 7
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.49 E-value=22 Score=26.46 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=20.7
Q ss_pred ccCCCCcceecCCCcCCCCCCCCCCceeC
Q 014310 37 KACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (427)
Q Consensus 37 ~~cp~c~~~id~~~v~~~~~~LPpGfRF~ 65 (427)
-.|+.|+++.|-.. -...-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~-Gdp~~gi~pGt~f~ 31 (55)
T 2v3b_B 4 WQCVVCGFIYDEAL-GLPEEGIPAGTRWE 31 (55)
T ss_dssp EEETTTCCEEETTT-CBTTTTBCTTCCGG
T ss_pred EEeCCCCeEECCCc-CCcccCcCCCCChh
Confidence 36999999988643 55566788887763
No 8
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.00 E-value=34 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred CcccCCCCcceecCCCcCCCCCCCCCCceeC
Q 014310 35 PTKACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (427)
Q Consensus 35 ~~~~cp~c~~~id~~~v~~~~~~LPpGfRF~ 65 (427)
..-.|+.|+++.|-.. -...-++|||-+|.
T Consensus 26 ~~y~C~vCGyvYD~~~-Gdp~~gI~pGT~fe 55 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEAL-GWPEDGIAAGTRWD 55 (81)
T ss_dssp CEEEETTTCCEEETTT-CBTTTTBCTTCCTT
T ss_pred ceEEeCCCCEEEcCCc-CCcccCcCCCCChh
Confidence 4568999999988643 45556788887763
No 9
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=21.79 E-value=63 Score=26.47 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCcccCCCCcceecCCCcCCCCCCCCCCceeCCC
Q 014310 34 NPTKACPNCHHVIDNSDVAHEWPGLPRGVKFDPS 67 (427)
Q Consensus 34 ~~~~~cp~c~~~id~~~v~~~~~~LPpGfRF~PT 67 (427)
.-...||.|+...=...-...--.+|+|..|+|.
T Consensus 46 ~g~~~CpYCg~~y~~~~~~~~~et~p~~c~~~~~ 79 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPSLSYNQTNPTGCLYNPK 79 (87)
T ss_dssp CCEECCTTTCCEEECCTTSCTTCCCSSCCBCCCS
T ss_pred CCeEECCCCCCEeEcCCCCCcCCcCCCCcEecCc
Confidence 4667999999887665555556679999999875
No 10
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.71 E-value=40 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.674 Sum_probs=20.8
Q ss_pred cccCCCCcceecCCCcCCCCCCCCCCcee
Q 014310 36 TKACPNCHHVIDNSDVAHEWPGLPRGVKF 64 (427)
Q Consensus 36 ~~~cp~c~~~id~~~v~~~~~~LPpGfRF 64 (427)
.-.|+.|+++.|-.. -...-++|||-+|
T Consensus 7 ~y~C~vCGyiYd~~~-Gdp~~gi~pGT~f 34 (70)
T 1dx8_A 7 KYECEACGYIYEPEK-GDKFAGIPPGTPF 34 (70)
T ss_dssp CEEETTTCCEECTTT-CCTTTTCCSSCCG
T ss_pred eEEeCCCCEEEcCCC-CCcccCcCCCCch
Confidence 457999999988533 5556678888776
No 11
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.20 E-value=27 Score=26.05 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=20.3
Q ss_pred ccCCCCcceecCCCcCCCCCCCCCCceeC
Q 014310 37 KACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (427)
Q Consensus 37 ~~cp~c~~~id~~~v~~~~~~LPpGfRF~ 65 (427)
-.|+.|+++.|-.. --..-++|||-+|.
T Consensus 4 y~C~vCGyvYd~~~-Gdp~~gi~pGt~fe 31 (54)
T 4rxn_A 4 YTCTVCGYIYDPED-GDPDDGVNPGTDFK 31 (54)
T ss_dssp EEETTTCCEECTTT-CBGGGTBCTTCCGG
T ss_pred eECCCCCeEECCCc-CCcccCcCCCCChh
Confidence 36999999998643 44445788888774
No 12
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.19 E-value=40 Score=27.57 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=21.8
Q ss_pred CcccCCCCcceecCCCcCCCCCCCCCCcee
Q 014310 35 PTKACPNCHHVIDNSDVAHEWPGLPRGVKF 64 (427)
Q Consensus 35 ~~~~cp~c~~~id~~~v~~~~~~LPpGfRF 64 (427)
..-.|..|+++.|-.. ....-++|||-+|
T Consensus 34 ~~y~C~vCGyvYD~~~-Gdp~~gI~pGT~f 62 (87)
T 1s24_A 34 LKWICITCGHIYDEAL-GDEAEGFTPGTRF 62 (87)
T ss_dssp CEEEETTTTEEEETTS-CCTTTTCCSCCCG
T ss_pred ceEECCCCCeEecCCc-CCcccCcCCCCCh
Confidence 4568999999988633 4556678888876
No 13
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.00 E-value=26 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=19.2
Q ss_pred ccCCCCcceecCCCcCCCCCCCCCCcee
Q 014310 37 KACPNCHHVIDNSDVAHEWPGLPRGVKF 64 (427)
Q Consensus 37 ~~cp~c~~~id~~~v~~~~~~LPpGfRF 64 (427)
-.|..|+++.|-.. -...-++|||-+|
T Consensus 3 ~~C~~CGyvYd~~~-Gdp~~gi~pGt~f 29 (52)
T 1yk4_A 3 LSCKICGYIYDEDE-GDPDNGISPGTKF 29 (52)
T ss_dssp EEESSSSCEEETTT-CBGGGTBCTTCCG
T ss_pred EEeCCCCeEECCCc-CCcccCcCCCCCH
Confidence 36999999988643 4445577888765
Done!