Your job contains 1 sequence.
>014311
MHTHRLSTPNHNLHQLGLSPCRIFYPTSSPTLAFNQNSTFGFCNSLKRLAKSLTSTRKCR
GGYRIRCGQVQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA
GQPHAEVFALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPI
VNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLG
EGVAESGGYYSQLLQEYDAIILSASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIPG
LSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGN
YGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQS
IVLEGYL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014311
(427 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2133074 - symbol:PyrD "pyrimidine deaminase" s... 1105 5.9e-112 1
TIGR_CMR|GSU_1688 - symbol:GSU_1688 "riboflavin biosynthe... 504 2.9e-48 1
TIGR_CMR|CHY_1475 - symbol:CHY_1475 "riboflavin biosynthe... 474 4.4e-45 1
UNIPROTKB|Q9KPU1 - symbol:VC_2271 "Riboflavin-specific de... 458 2.2e-43 1
TIGR_CMR|VC_2271 - symbol:VC_2271 "riboflavin biosynthesi... 458 2.2e-43 1
UNIPROTKB|P25539 - symbol:ribD "fused diaminohydroxyphosp... 455 4.5e-43 1
TIGR_CMR|DET_1190 - symbol:DET_1190 "riboflavin biosynthe... 452 9.3e-43 1
TIGR_CMR|SO_3469 - symbol:SO_3469 "riboflavin biosynthesi... 433 9.6e-41 1
TIGR_CMR|CPS_0730 - symbol:CPS_0730 "riboflavin biosynthe... 374 2.8e-40 2
TIGR_CMR|BA_4331 - symbol:BA_4331 "riboflavin biosynthesi... 411 2.1e-38 1
TIGR_CMR|SPO_1754 - symbol:SPO_1754 "riboflavin biosynthe... 370 4.6e-34 1
TIGR_CMR|CBU_0643 - symbol:CBU_0643 "riboflavin biosynthe... 359 6.7e-33 1
TIGR_CMR|APH_0037 - symbol:APH_0037 "riboflavin biosynthe... 329 1.0e-32 2
TIGR_CMR|NSE_0499 - symbol:NSE_0499 "riboflavin biosynthe... 347 1.3e-31 1
TIGR_CMR|ECH_0169 - symbol:ECH_0169 "riboflavin biosynthe... 345 2.0e-31 1
UNIPROTKB|P71677 - symbol:ribD "Riboflavin biosynthesis p... 288 2.2e-25 1
TAIR|locus:2099555 - symbol:PHS1 "AT3G47390" species:3702... 299 1.1e-24 1
UNIPROTKB|Q0C679 - symbol:HNE_0030 "Riboflavin biosynthes... 204 7.5e-16 1
UNIPROTKB|Q5HSH0 - symbol:CJE1794 "Riboflavin biosynthesi... 128 8.3e-12 2
TIGR_CMR|CJE_1794 - symbol:CJE_1794 "riboflavin biosynthe... 128 8.3e-12 2
UNIPROTKB|Q4K6X5 - symbol:tadA "tRNA-specific adenosine d... 138 1.2e-08 1
UNIPROTKB|Q886W8 - symbol:PSPTO_1457 "Cytidine/deoxycytid... 131 7.0e-08 1
POMBASE|SPCC4G3.16 - symbol:SPCC4G3.16 "CMP deaminase fam... 148 2.0e-07 1
UNIPROTKB|Q47XY3 - symbol:CPS_3669 "Cytidine/deoxycytidyl... 130 4.5e-07 1
TIGR_CMR|CPS_3669 - symbol:CPS_3669 "cytidine/deoxycytidy... 130 4.5e-07 1
UNIPROTKB|Q74H28 - symbol:tadA "tRNA (Adenosine-34) deami... 129 4.6e-07 1
TIGR_CMR|GSU_0065 - symbol:GSU_0065 "cytidine/deoxycytidy... 129 4.6e-07 1
SGD|S000006266 - symbol:FCY1 "Cytosine deaminase" species... 119 1.4e-06 1
UNIPROTKB|Q83DS3 - symbol:CBU_0622 "tRNA-specific adenosi... 117 2.3e-06 1
TIGR_CMR|CBU_0622 - symbol:CBU_0622 "zinc-binding domain ... 117 2.3e-06 1
UNIPROTKB|P68398 - symbol:tadA "tRNA-specific adenosine d... 116 2.6e-05 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 129 4.8e-05 1
UNIPROTKB|Q60C22 - symbol:yfhC "Zinc-binding domain prote... 104 5.8e-05 1
UNIPROTKB|Q9KTN7 - symbol:VC_0864 "YfhC protein" species:... 110 0.00056 1
TIGR_CMR|VC_0864 - symbol:VC_0864 "zinc-binding domain pr... 110 0.00056 1
UNIPROTKB|Q8EC53 - symbol:tadA "tRNA-specific adenosine d... 105 0.00064 1
TIGR_CMR|SO_3291 - symbol:SO_3291 "cytidine/deoxycytidyla... 105 0.00064 1
>TAIR|locus:2133074 [details] [associations]
symbol:PyrD "pyrimidine deaminase" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=IEA;IGI] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA;IDA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009570 "chloroplast stroma" evidence=IDA]
InterPro:IPR002125 InterPro:IPR004794 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 InterPro:IPR024072
GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0055114 GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 KO:K11752
TIGRFAMs:TIGR00326 EMBL:BT006051 EMBL:AK118717 IPI:IPI00537120
RefSeq:NP_567618.1 UniGene:At.32681 HSSP:Q12178
ProteinModelPortal:Q8GWP5 SMR:Q8GWP5 STRING:Q8GWP5 PaxDb:Q8GWP5
PRIDE:Q8GWP5 EnsemblPlants:AT4G20960.1 GeneID:827843
KEGG:ath:AT4G20960 TAIR:At4g20960 HOGENOM:HOG000257443
InParanoid:Q8GWP5 OMA:IGCTSPN PhylomeDB:Q8GWP5 ProtClustDB:PLN02807
BioCyc:MetaCyc:AT4G20960-MONOMER Genevestigator:Q8GWP5
Uniprot:Q8GWP5
Length = 426
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 231/408 (56%), Positives = 289/408 (70%)
Query: 27 TSSPTLAFNQNS--TFGFCNSLKRLAKSLTS-TRKCRGGYRIRCGQVQNNDKDDGFYMRR 83
+S+P FN S + C KRL KS T + R + ++ + DD FYMR+
Sbjct: 26 SSNPRRIFNLTSLQSPNHC-FFKRLHKSQTGFSNPVLAAMR----REEDVEVDDSFYMRK 80
Query: 84 CVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAY 143
CVELA +A+G TSPNPMVGCVIVKDG IVG+GFHPKAGQPHAEVFALRDAGELAE ATAY
Sbjct: 81 CVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGELAENATAY 140
Query: 144 VSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDE 203
VSLEPCNHYGRTPPCTEALI GM+DPNPIV S G+ RL+DAGIDVTV VE+E
Sbjct: 141 VSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDVTVSVEEE 200
Query: 204 LCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYDAIILS 263
LCK++NE FIHR++TGKPF LRY++SVNG +LD++G+G ++SGGYYS+LLQEYDAIILS
Sbjct: 201 LCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSKLLQEYDAIILS 260
Query: 264 ASSTKKYSIPASQEPD--ANQPFRIITVSNHASPIRIPGLS---EESSSKVIVFTDGEIT 318
+S + + S +SQE + QP +II SN A I S EES KV+VFT E
Sbjct: 261 SSLSDELSSISSQEAINVSIQPIQIIVASN-AQQSHILASSHTVEESGPKVVVFTAKESV 319
Query: 319 VEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378
E + + G+ETV L ++NL ++LDYCY+ G CSVL+DLRGN DLE+LL++G EQ LLQ
Sbjct: 320 AESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLEVLLRDGFEQKLLQ 379
Query: 379 KIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426
K+++EVLP W+ D ++ K + K+LQ K S++LEGY
Sbjct: 380 KVIIEVLPEWSTKDERQIASMKWLESKHV--KDLQSKQLGGSVLLEGY 425
>TIGR_CMR|GSU_1688 [details] [associations]
symbol:GSU_1688 "riboflavin biosynthesis protein RibD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835
GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752 OMA:LHVEAGF
TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 RefSeq:NP_952739.1
ProteinModelPortal:Q74CI5 GeneID:2685605 KEGG:gsu:GSU1688
PATRIC:22026225 ProtClustDB:CLSK828486
BioCyc:GSUL243231:GH27-1709-MONOMER Uniprot:Q74CI5
Length = 369
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 121/359 (33%), Positives = 189/359 (52%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGA 140
MRR + LA K +G TSPNP+VGCVIV++G +VGEG+H KAG PHAEV ALR+AG LA GA
Sbjct: 9 MRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALREAGPLARGA 68
Query: 141 TAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGV 200
YV+LEPC+H+GRTPPC +AL+ GM+DPNP V KG+ RL GI V GV
Sbjct: 69 DVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQVITGV 128
Query: 201 EDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG--VA--ESGGYYSQLLQE 256
+ C+ +NE F+ + TG PF TL+ L+++G LG+ + +S Y QL E
Sbjct: 129 LGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRRYVHQLRAE 188
Query: 257 YDAIILSASSTKKYSIPAS-QEPDANQPFRIITVSNHASPIRIPGLSEESSSKVIVFTDG 315
DA+++ + + + + P RII S+ P L ++ + I+ T
Sbjct: 189 VDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDLARGTIIATTS 248
Query: 316 EITVEPD-MGTKGIETVNLH----QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKE 370
+ + T+G + + +++L+ ++ + G S+L++ G E L
Sbjct: 249 DDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLE-----GGSE-LAGA 302
Query: 371 GIEQNLLQKIVVEVLPVWNGSDGGNP---HTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426
+ Q L+ K ++ P+ G G + +G+ L+ + + +++E Y
Sbjct: 303 ALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMIEAY 361
>TIGR_CMR|CHY_1475 [details] [associations]
symbol:CHY_1475 "riboflavin biosynthesis protein RibD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase
activity" evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_360307.1 ProteinModelPortal:Q3AC27 STRING:Q3AC27
GeneID:3726293 KEGG:chy:CHY_1475 PATRIC:21276081 OMA:WYGRNPV
BioCyc:CHYD246194:GJCN-1474-MONOMER Uniprot:Q3AC27
Length = 361
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 128/363 (35%), Positives = 189/363 (52%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIV-KDGKIVGEGFHPKAGQPHAEVFALRDAG 134
+D M+R ++LA +A+G TSPNP+VG VIV KDG IVGEG+H KAG PHAE AL+ AG
Sbjct: 2 NDQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAG 61
Query: 135 ELAEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGI 194
E A G T YV+LEPC HYGRTPPCT+A+I + DPNP V+ KG+E LR+AGI
Sbjct: 62 EKARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGI 121
Query: 195 DVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESG----GYY 250
+V GV E LNE F I TG PF +L++ ++V+G + + + SG +
Sbjct: 122 EVVEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFV 181
Query: 251 SQLLQEYDAIILSASSTK-KYSIPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKV 309
+L EYDA+++ A + + + P P+RI+ + P + E +
Sbjct: 182 HRLRNEYDAVLVGAKTLIIDNPLLTCRIPQGRNPYRIVLSGSGNLPEGLNIFQLEKEKNI 241
Query: 310 IVFTDGEITVEPDMGTKGIETVNL--HQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEML 367
++ ++ G I T L +++N+K G S+LV+ G +
Sbjct: 242 LITASKKLPKHVSNGFGHIITTPLGENRINIKEAFLELSRLGIISILVE--GG-----AV 294
Query: 368 LKEGIEQN-LLQKIVVEVLP-VWNGSDGGNP-HTLLNSLGK-RLILKNLQPKMSSQSIVL 423
+ + QN L K + + P + G + P L SL K L L + + + + +
Sbjct: 295 VHASLLQNRLADKAYIFIAPKIVGGKNAPGPIGDLKISLMKDALPLAIHKLRRFGEDVFI 354
Query: 424 EGY 426
EGY
Sbjct: 355 EGY 357
>UNIPROTKB|Q9KPU1 [details] [associations]
symbol:VC_2271 "Riboflavin-specific deaminase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase
activity" evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 PIR:F82098 RefSeq:NP_231902.1
ProteinModelPortal:Q9KPU1 DNASU:2613193 GeneID:2613193
KEGG:vch:VC2271 PATRIC:20083583 ProtClustDB:CLSK874739
Uniprot:Q9KPU1
Length = 367
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 128/360 (35%), Positives = 184/360 (51%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGA 140
M R +ELA + +TSPNP VGCVI + +IVGEGFH +AG+PHAEV A+R AGEL GA
Sbjct: 12 MSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQAGELTRGA 71
Query: 141 TAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGV 200
TAYV+LEPC+HYGRTPPC E LI M DPNP V KG++ LRDAGI+V VG+
Sbjct: 72 TAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGL 131
Query: 201 EDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYDA- 259
+ + LN F+ R+ TG PF L+ S++G G+ + + +Q + A
Sbjct: 132 LEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQ 191
Query: 260 --IILSASST----------KKYSIPAS-----QEPDANQPFRIITVSNHASPIRIPGLS 302
ILS S T + Y +P+S E D QP R+I H +
Sbjct: 192 ASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ 251
Query: 303 EESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYG 362
S + + E+ + + G ++L +L A+L H + V+ G+
Sbjct: 252 TPSPVLRVASENAELCISAENGK-----LDLREL--LALL--AQQHNVNQLWVEA-GS-- 299
Query: 363 DLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIV 422
L + IEQ L+ +I++ + P GSDG L +LG + + ++ K+ +V
Sbjct: 300 ---QLAQSLIEQKLVDEIILYLAPKLMGSDGRG---LFGALGLTEMAEAIELKIEDCRMV 353
>TIGR_CMR|VC_2271 [details] [associations]
symbol:VC_2271 "riboflavin biosynthesis protein RibD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 PIR:F82098 RefSeq:NP_231902.1
ProteinModelPortal:Q9KPU1 DNASU:2613193 GeneID:2613193
KEGG:vch:VC2271 PATRIC:20083583 ProtClustDB:CLSK874739
Uniprot:Q9KPU1
Length = 367
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 128/360 (35%), Positives = 184/360 (51%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGA 140
M R +ELA + +TSPNP VGCVI + +IVGEGFH +AG+PHAEV A+R AGEL GA
Sbjct: 12 MSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQAGELTRGA 71
Query: 141 TAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGV 200
TAYV+LEPC+HYGRTPPC E LI M DPNP V KG++ LRDAGI+V VG+
Sbjct: 72 TAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGL 131
Query: 201 EDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYDA- 259
+ + LN F+ R+ TG PF L+ S++G G+ + + +Q + A
Sbjct: 132 LEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQ 191
Query: 260 --IILSASST----------KKYSIPAS-----QEPDANQPFRIITVSNHASPIRIPGLS 302
ILS S T + Y +P+S E D QP R+I H +
Sbjct: 192 ASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ 251
Query: 303 EESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYG 362
S + + E+ + + G ++L +L A+L H + V+ G+
Sbjct: 252 TPSPVLRVASENAELCISAENGK-----LDLREL--LALL--AQQHNVNQLWVEA-GS-- 299
Query: 363 DLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIV 422
L + IEQ L+ +I++ + P GSDG L +LG + + ++ K+ +V
Sbjct: 300 ---QLAQSLIEQKLVDEIILYLAPKLMGSDGRG---LFGALGLTEMAEAIELKIEDCRMV 353
>UNIPROTKB|P25539 [details] [associations]
symbol:ribD "fused
diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase" species:83333
"Escherichia coli K-12" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050661 "NADP binding" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA;IDA] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA;IDA] [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=IEA;IDA] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 UniPathway:UPA00275 InterPro:IPR024072 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0050661 GO:GO:0008270 SUPFAM:SSF53927
EMBL:U82664 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
EMBL:X64395 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
TIGRFAMs:TIGR00227 PIR:S26201 RefSeq:NP_414948.1 RefSeq:YP_488706.1
PDB:2G6V PDB:2O7P PDB:2OBC PDBsum:2G6V PDBsum:2O7P PDBsum:2OBC
ProteinModelPortal:P25539 SMR:P25539 DIP:DIP-10708N IntAct:P25539
MINT:MINT-1221612 PRIDE:P25539 EnsemblBacteria:EBESCT00000003732
EnsemblBacteria:EBESCT00000017165 GeneID:12934255 GeneID:945620
KEGG:ecj:Y75_p0402 KEGG:eco:b0414 PATRIC:32115977 EchoBASE:EB1297
EcoGene:EG11321 HOGENOM:HOG000257442 KO:K11752 OMA:LHVEAGF
ProtClustDB:PRK10786 BioCyc:EcoCyc:RIBOFLAVINSYNDEAM-MONOMER
BioCyc:ECOL316407:JW0404-MONOMER
BioCyc:MetaCyc:RIBOFLAVINSYNDEAM-MONOMER EvolutionaryTrace:P25539
Genevestigator:P25539 TIGRFAMs:TIGR00326 Uniprot:P25539
Length = 367
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 104/229 (45%), Positives = 137/229 (59%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +YM R ++LA + +T PNP VGCVIVKDG+IVGEG+H +AG+PHAEV ALR AGE
Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A+GATAYV+LEPC+H+GRTPPC +ALI M DPNP V +GL RL+ AGIDV
Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQL 253
+ G+ ++LN+ F+ R+ TG P+ L+ S++G GE + QL
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182
Query: 254 LQEYDAIILSASSTKKYSIPAS----QEPDANQPFRIITVSNHASPIRI 298
L+ IL++S+T PA E D Q + N PIRI
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELD-EQTQALYPQQNLRQPIRI 230
>TIGR_CMR|DET_1190 [details] [associations]
symbol:DET_1190 "riboflavin biosynthesis protein RibD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_181903.1 ProteinModelPortal:Q3Z796 STRING:Q3Z796
GeneID:3229533 KEGG:det:DET1190 PATRIC:21609415
ProtClustDB:CLSK837091 BioCyc:DETH243164:GJNF-1191-MONOMER
Uniprot:Q3Z796
Length = 365
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 121/371 (32%), Positives = 194/371 (52%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEG 139
YM + + LA A+G SPNP VG VIVK+G++VG+GF G HAE+ AL+ A E A+G
Sbjct: 3 YMSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAKG 62
Query: 140 ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVG 199
A YV+LEPC H GRTPPCT A+I LD NP+V+ KG + L DAGI V +G
Sbjct: 63 AALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHLG 122
Query: 200 VEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG--VA-ESGGYYSQLLQE 256
+ + +++NEA+ I TG PF T +Y +S++G + G+ ++ E +++ ++
Sbjct: 123 MMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIRH 182
Query: 257 YDAIILSASSTKKYSIP-ASQEPDAN-------QPFRIITVSNHASPI-----RIPGLSE 303
+I++ +T P + + QP R+I N +P+ +PG +
Sbjct: 183 ISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAPLSSNVFHVPGNTI 242
Query: 304 ESSSKVIVFTDGEITVEPDMGTKGIETVNLHQL-NLKAVLDYCYSHGFCSVLVDLRGNYG 362
+ +K + T E ++G K +E + L +LK++L Y +G SVLV+ G
Sbjct: 243 VAVAKGL--TPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGVTSVLVEGGG--- 297
Query: 363 DLEMLLKEGIEQNLLQKIVVEVLPVW-NGSDGGNPHTLLNSLGKRLI-----LKNLQPKM 416
++L + L+ K++V V P+ G D P + LG LI L+++
Sbjct: 298 ---IVLGSLFDLKLVDKVLVFVAPIIIGGKDAKIP---VAGLGAELITDSAKLRDITTTA 351
Query: 417 SSQSIVLEGYL 427
Q +++ GY+
Sbjct: 352 FGQDVLISGYV 362
>TIGR_CMR|SO_3469 [details] [associations]
symbol:SO_3469 "riboflavin biosynthesis protein RibD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835
GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 HSSP:Q12178 RefSeq:NP_719018.1
ProteinModelPortal:Q8EBP0 GeneID:1171145 KEGG:son:SO_3469
PATRIC:23526634 OMA:PDYQTMA ProtClustDB:CLSK907182 Uniprot:Q8EBP0
Length = 381
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 87/169 (51%), Positives = 111/169 (65%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D M R ++LA K +T PNP VGCVIV D +IVGEG+H KAG+PHAEV ALR AGEL
Sbjct: 7 DNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHALRMAGEL 66
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A GATAYV+LEPC+HYGRTPPC ALI + DPNP V +G++ LRDAGI V
Sbjct: 67 ARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQV 126
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAE 245
VG+ + LN F+ R+ +G P+ T++ S++G L GV++
Sbjct: 127 DVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTA--LSNGVSK 173
>TIGR_CMR|CPS_0730 [details] [associations]
symbol:CPS_0730 "riboflavin biosynthesis protein RibD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442
KO:K11752 OMA:LHVEAGF TIGRFAMs:TIGR00326 RefSeq:YP_267480.1
ProteinModelPortal:Q488N4 STRING:Q488N4 GeneID:3522815
KEGG:cps:CPS_0730 PATRIC:21464775
BioCyc:CPSY167879:GI48-817-MONOMER Uniprot:Q488N4
Length = 389
Score = 374 (136.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 78/169 (46%), Positives = 105/169 (62%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIV--KDG--KIVGEGFHPKAGQPHAEVFALRDAG-- 134
M R ++LA K +TSPNP VGCV+V K+G K++GEG+H KAGQ HAEV AL +A
Sbjct: 1 MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60
Query: 135 --ELAEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDA 192
L +GATAYV+LEPC+H+GRTPPC +AL+ M+DPNP V+ GL L A
Sbjct: 61 NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120
Query: 193 GIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGE 241
GI V G+ ++ + LN FIH++V P+ + S++G GE
Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGE 169
Score = 71 (30.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 335 QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGG 394
++NLKA+L+Y G +L++ L IEQNL+ ++++ P G DG
Sbjct: 297 KINLKALLEYLAKRGLNDILIESGAR------LSGAFIEQNLVNELILYQAPKLMGGDGK 350
Query: 395 N 395
N
Sbjct: 351 N 351
>TIGR_CMR|BA_4331 [details] [associations]
symbol:BA_4331 "riboflavin biosynthesis protein RibD"
species:198094 "Bacillus anthracis str. Ames" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:NP_846564.1 RefSeq:YP_020977.1 RefSeq:YP_030268.1
ProteinModelPortal:Q81MB8 SMR:Q81MB8 IntAct:Q81MB8 DNASU:1087530
EnsemblBacteria:EBBACT00000009552 EnsemblBacteria:EBBACT00000014359
EnsemblBacteria:EBBACT00000024446 GeneID:1087530 GeneID:2815149
GeneID:2850342 KEGG:ban:BA_4331 KEGG:bar:GBAA_4331 KEGG:bat:BAS4018
ProtClustDB:CLSK873057 BioCyc:BANT260799:GJAJ-4075-MONOMER
BioCyc:BANT261594:GJ7F-4215-MONOMER Uniprot:Q81MB8
Length = 370
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 96/246 (39%), Positives = 141/246 (57%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D YMR ++LA G TSPNPMVG V+VKDG IVG G H +AG+ HAEV AL AG+
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A+GAT YV+LEPC+H+G+TPPC E LI LD NP+V+ G +L +AGI+V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQE 256
T GV + LN F H + T +PF T++ +S++G GE +G + +
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 257 Y----DAIILSASSTKKYSIP--ASQEPDANQ-PFRIITVSNHASPIRIPGLSEE-SSSK 308
Y DAI++ ++ + P ++ P+ Q P R+I ++ +P +++ + +
Sbjct: 183 YRHTHDAILVGVNTVIADN-PHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 309 VIVFTD 314
+IV TD
Sbjct: 242 IIVGTD 247
>TIGR_CMR|SPO_1754 [details] [associations]
symbol:SPO_1754 "riboflavin biosynthesis protein RibD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442
KO:K11752 OMA:LHVEAGF TIGRFAMs:TIGR00326 RefSeq:YP_166992.1
ProteinModelPortal:Q5LSL3 GeneID:3193058 KEGG:sil:SPO1754
PATRIC:23376831 ProtClustDB:CLSK2767255 Uniprot:Q5LSL3
Length = 364
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 84/222 (37%), Positives = 119/222 (53%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D YM + L + G PNP VGCVIV +G+IVG G+ G+PHAEV AL AG
Sbjct: 5 DARYMALALSLGRRGQGVCWPNPAVGCVIVNEGRIVGRGWTQPGGRPHAEVVALAQAGGA 64
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A GATAYV+LEPC H+G+TPPC EALI + D +P V G E LR AGI+V
Sbjct: 65 ARGATAYVTLEPCAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRAGIEV 124
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ- 255
+VG+ ++ R F + G+P+ TL+ S +G + GE +G + +
Sbjct: 125 SVGIGEDAAARDLAGFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEARRAVHA 184
Query: 256 ---EYDAIILSASSTKKY--SIPASQEPDANQPFRIITVSNH 292
+DA+++ A + + S+ A QP R++ VS +
Sbjct: 185 MRARHDAVLVGAGTARSDDPSLTVRDMGVAQQPVRVV-VSRY 225
>TIGR_CMR|CBU_0643 [details] [associations]
symbol:CBU_0643 "riboflavin biosynthesis protein RibD"
species:227377 "Coxiella burnetii RSA 493" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 GO:GO:0008835 GO:GO:0008703 KO:K11752 OMA:LHVEAGF
TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 RefSeq:NP_819673.1
ProteinModelPortal:Q83DQ3 PRIDE:Q83DQ3 GeneID:1208528
KEGG:cbu:CBU_0643 PATRIC:17929965 ProtClustDB:CLSK914208
BioCyc:CBUR227377:GJ7S-640-MONOMER Uniprot:Q83DQ3
Length = 354
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 98/328 (29%), Positives = 170/328 (51%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEG 139
Y+++ + LA G +PNP VG V+VKD KI+ GFH ++G PHAEV A++ G+ A G
Sbjct: 8 YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAIKSLGDKARG 67
Query: 140 ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVG 199
A YV+LEPC H+G+TPPCT+ +I G+ DPN V KG+E+L+ AG++ +
Sbjct: 68 AALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQRAGVNCFL- 126
Query: 200 VEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESG-G---YYSQLLQ 255
+E E++ + I +P+ T + LS++G ++ G+ V +G G Y + +
Sbjct: 127 IELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLRQYTHERRK 186
Query: 256 EYDAIILSASST----KKYSIPASQEPDANQPFRIITVSNHASPIRIP--GLSEESSSKV 309
+ DA++ + ++ K ++ E + +P I+ H +R+P L +++ +
Sbjct: 187 KSDALLTTINTILTDDPKLNVRLQGE-EIKKPIYIL--DTH---LRLPLNALIHQTAESI 240
Query: 310 IVFTDGEITVEPD--MGTKGIETVNLHQ----LNLKAVLDYCYSHGFCSVLVDLRGNYGD 363
IVF E + + K I + + + L+L VLD + G + ++ G
Sbjct: 241 IVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGGTC-- 298
Query: 364 LEMLLKEGIEQNLLQKIVVEVLPVWNGS 391
+ LKE NL+ + ++ + P GS
Sbjct: 299 FQSFLKE----NLINRALIYIAPKILGS 322
>TIGR_CMR|APH_0037 [details] [associations]
symbol:APH_0037 "riboflavin biosynthesis protein RibD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 OMA:RWITNEL
ProtClustDB:CLSK749535 RefSeq:YP_504671.1 ProteinModelPortal:Q2GLT0
STRING:Q2GLT0 GeneID:3930894 KEGG:aph:APH_0037 PATRIC:20948608
BioCyc:APHA212042:GHPM-76-MONOMER Uniprot:Q2GLT0
Length = 364
Score = 329 (120.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 65/159 (40%), Positives = 94/159 (59%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +M + LA + +G+ PNP VGCV+++DG +VG G+ G+PHAE+ AL++AG
Sbjct: 4 DERFMAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNAGNR 63
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A GAT YV+LEPC H G T PCT ALI G+ DP+ V+ KG+ L AGI+V
Sbjct: 64 AIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEV 123
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHV 235
GV + + LN F + V +P T + +++G +
Sbjct: 124 KYGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKI 162
Score = 44 (20.5 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 297 RIPGLSEESSSKVIVFTDGEI 317
R+PGL + S +V+V G++
Sbjct: 208 RLPGLEKHSPIRVVVDRSGKL 228
>TIGR_CMR|NSE_0499 [details] [associations]
symbol:NSE_0499 "riboflavin biosynthesis protein RibD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_506383.1 ProteinModelPortal:Q2GDR3 STRING:Q2GDR3
GeneID:3932118 KEGG:nse:NSE_0499 PATRIC:22681047 OMA:PPCADRI
ProtClustDB:CLSK2527729 BioCyc:NSEN222891:GHFU-519-MONOMER
Uniprot:Q2GDR3
Length = 372
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 92/288 (31%), Positives = 138/288 (47%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
+YM V + G T+ NP VGC+IVKD ++VG+G G PHAE AL+ AG A
Sbjct: 12 YYMEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKAR 71
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTV 198
GA Y +LEPC H+GRT PCT+ +I G DP+ VN KG+++L+++GI VT
Sbjct: 72 GADLYTTLEPCAHHGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQKLQESGIVVTT 131
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYD 258
G+ C N + +R V GKPF L+ +++G + G+ S S ++
Sbjct: 132 GILKRECCVSNIGYFYRQVLGKPFVILKTATTLDGKIACFNGK----SAWITSPAMRRTA 187
Query: 259 AIILSASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKVIVFTDGEI- 317
++ SS+ S + D R+ V + + + E SS +F DG +
Sbjct: 188 HMLRRMSSSVMISYSTLKHDDPQLSCRLPGVKKESIKVVLDTRGEISSPNFKIFNDGIVW 247
Query: 318 -----TVEPDMGTKGIET-VNLHQLNLKAVLDYCYSHGFCSVLVDLRG 359
+ E +N L+L+ VL + G SVLV+ G
Sbjct: 248 SFGKRNIFKHKNFFNFEANLNGEMLDLEDVLQQLGTMGINSVLVECGG 295
>TIGR_CMR|ECH_0169 [details] [associations]
symbol:ECH_0169 "riboflavin biosynthesis protein RibD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_506994.1 ProteinModelPortal:Q2GHT9 STRING:Q2GHT9
GeneID:3927940 KEGG:ech:ECH_0169 PATRIC:20575879 OMA:RWITNEL
ProtClustDB:CLSK749535 BioCyc:ECHA205920:GJNR-169-MONOMER
Uniprot:Q2GHT9
Length = 360
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 65/159 (40%), Positives = 96/159 (60%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +M + +A + +G+ PNP VGC++V G +VG G+ G+PHAEV AL +AG L
Sbjct: 5 DKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGHL 64
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A+G+T YV+LEPC+HYG+T PC LI DP+ V+ G+E LR+AGIDV
Sbjct: 65 AKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDV 124
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHV 235
GV E + LN F + + +PF T++ +++G +
Sbjct: 125 KCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKI 163
>UNIPROTKB|P71677 [details] [associations]
symbol:ribD "Riboflavin biosynthesis protein RibD"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002125
InterPro:IPR002734 InterPro:IPR004794 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 UniPathway:UPA00275 InterPro:IPR024072
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842576 GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231
Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835
GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752 TIGRFAMs:TIGR00326
PIR:F70901 RefSeq:NP_215925.1 RefSeq:NP_335904.1
RefSeq:YP_006514789.1 ProteinModelPortal:P71677 SMR:P71677
PRIDE:P71677 EnsemblBacteria:EBMYCT00000000165
EnsemblBacteria:EBMYCT00000069653 GeneID:13319998 GeneID:886721
GeneID:924519 KEGG:mtc:MT1453 KEGG:mtu:Rv1409 KEGG:mtv:RVBD_1409
PATRIC:18124964 TubercuList:Rv1409 OMA:MAFNNLK
ProtClustDB:CLSK791144 Uniprot:P71677
Length = 339
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 69/156 (44%), Positives = 86/156 (55%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKAGQPHAEVFALRDAGELAEG 139
M +E + + G+T P P VG VIV +G+IVG G AG HAEV ALR AG LA G
Sbjct: 13 MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRAGGLAAG 72
Query: 140 ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVG 199
A V++EPCNHYG+TPPC ALI + DPN I G RL AG+ V G
Sbjct: 73 AIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPNGIAGG-GAGRLSAAGLQVRSG 131
Query: 200 V--EDELCKRLNEAFIHRIVTGKPFATLRYTLSVNG 233
V E L E ++H+ TG P T +Y S++G
Sbjct: 132 VLAEQVAAGPLRE-WLHKQRTGLPHVTWKYATSIDG 166
>TAIR|locus:2099555 [details] [associations]
symbol:PHS1 "AT3G47390" species:3702 "Arabidopsis
thaliana" [GO:0008270 "zinc ion binding" evidence=ISS] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil
reductase activity" evidence=IDA;NAS] [GO:0009644 "response to high
light intensity" evidence=IMP] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0046443 "FAD metabolic process"
evidence=IMP] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 InterPro:IPR024072 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050661 GO:GO:0008270 GO:GO:0009658
SUPFAM:SSF53927 GO:GO:0009644 GO:GO:0009231 EMBL:AL096860
Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835 GO:GO:0008703
TIGRFAMs:TIGR00227 TIGRFAMs:TIGR00326 GO:GO:0046443 eggNOG:COG3236
InterPro:IPR012816 Pfam:PF08719 TIGRFAMs:TIGR02464
HOGENOM:HOG000257443 IPI:IPI00548640 PIR:T12994 RefSeq:NP_190323.1
UniGene:At.53819 ProteinModelPortal:Q9STY4 SMR:Q9STY4 STRING:Q9STY4
PaxDb:Q9STY4 PRIDE:Q9STY4 EnsemblPlants:AT3G47390.1 GeneID:823893
KEGG:ath:AT3G47390 TAIR:At3g47390 InParanoid:Q9STY4 OMA:MSEAPRL
PhylomeDB:Q9STY4 ProtClustDB:CLSN2685169 ArrayExpress:Q9STY4
Genevestigator:Q9STY4 Uniprot:Q9STY4
Length = 599
Score = 299 (110.3 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 93/346 (26%), Positives = 156/346 (45%)
Query: 71 QNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIV-KDGKIVGEGFHPKAGQPHAEVFA 129
+N D ++RR +L+ + G TSP+P GCVI GK+ GEG+ G AE A
Sbjct: 26 RNYHTTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALA 85
Query: 130 LRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERL 189
+ AGE + GATAY+++EP + +G AL+ G+ P + + L
Sbjct: 86 VEAAGEFSRGATAYLNMEPGDCHG-DHTAVSALVQAGIERVVVGIRHPLQHLRGSAIREL 144
Query: 190 RDAGIDVTVGVED----------ELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQL 239
R GI+V V ED + C +N IHR + PF+ L+Y ++++G +
Sbjct: 145 RSHGIEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASS 204
Query: 240 GEGVAESGGYYSQLLQEY----DAIILSASSTKKYSIP--ASQEPDANQPFRIITVSNHA 293
G S + E DA+I+ ++ ++ P ++ + P RI+ +
Sbjct: 205 GHAAWISSKLSRTRVFELRGGSDAVIVGGNTVRQDD-PRLTARHGQGHTPTRIVMTQSLD 263
Query: 294 SPIRIPGLSEESSSKVIVFTD--GEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFC 351
P + L + S IV T + + + +KG+E V LN + V++Y + G+
Sbjct: 264 LPEKA-NLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYL 322
Query: 352 SVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLP-VWNGSDGGNP 396
S+L + G L I +++ K+V V P + GS +P
Sbjct: 323 SILWECGGT------LAASAISSSVIHKVVAFVAPKIIGGSKAPSP 362
>UNIPROTKB|Q0C679 [details] [associations]
symbol:HNE_0030 "Riboflavin biosynthesis protein RibD
N-terminal domain protein" species:228405 "Hyphomonas neptunium
ATCC 15444" [GO:0003674 "molecular_function" evidence=ND]
[GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0016787 GO:GO:0009231 EMBL:CP000158
GenomeReviews:CP000158_GR HOGENOM:HOG000085050 eggNOG:COG0117
RefSeq:YP_758764.1 ProteinModelPortal:Q0C679 STRING:Q0C679
GeneID:4289604 KEGG:hne:HNE_0030 PATRIC:32212844 OMA:MVRISAD
ProtClustDB:CLSK2317020 BioCyc:HNEP228405:GI69-77-MONOMER
Uniprot:Q0C679
Length = 152
Score = 204 (76.9 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 52/134 (38%), Positives = 63/134 (47%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVKD-GKIVGEGFHPKAGQPHAEVFALRDAGELAEG 139
M R +LA G T NP VGC+I+ G I G G G PHAE AL +A A G
Sbjct: 13 MGRAFQLARLNHGLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAAG 72
Query: 140 ATAYVSLEPCNHYGR-TPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTV 198
TAYV+LEPC P C L+ + DP+P GL LR+AG+ V
Sbjct: 73 GTAYVTLEPCRERSSGAPSCARKLVEAGIARVVVAIEDPHPTARD-GLAILREAGVRVET 131
Query: 199 GVEDELCKRLNEAF 212
G+ RL AF
Sbjct: 132 GLGKYTAARLYRAF 145
>UNIPROTKB|Q5HSH0 [details] [associations]
symbol:CJE1794 "Riboflavin biosynthesis protein RibD,
putative" species:195099 "Campylobacter jejuni RM1221" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR004794
InterPro:IPR016193 Pfam:PF00383 InterPro:IPR024072 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 RefSeq:YP_179765.1 ProteinModelPortal:Q5HSH0
STRING:Q5HSH0 GeneID:3232421 KEGG:cjr:CJE1794 PATRIC:20045408
OMA:ENPSVAC ProtClustDB:CLSK879337
BioCyc:CJEJ195099:GJC0-1828-MONOMER Uniprot:Q5HSH0
Length = 326
Score = 128 (50.1 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 142 AYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVE 201
A+V+LEPC+H G+TPPC + + D N I S G E L+ GI+V +
Sbjct: 93 AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIA-SGGAEFLKKQGIEVEFDIL 151
Query: 202 DELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYDAII 261
E K+L + F+ + G+ F + LS+NG ++ S Y ++ D ++
Sbjct: 152 KEEGKKLLKPFL-KWQKGQ-FKLFKLALSMNGSPFGKIVSNKL-SRTYAHKIRAVIDLLV 208
Query: 262 LSASSTKK 269
+ + +K
Sbjct: 209 VGGETIRK 216
Score = 102 (41.0 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIV-KDGKIVGEGFHPKAGQPHAEVFALRDA 133
FYM + A K T PNP VGCVI+ K+ KI+ H KAG HAE+ A+ A
Sbjct: 4 FYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHA 59
>TIGR_CMR|CJE_1794 [details] [associations]
symbol:CJE_1794 "riboflavin biosynthesis protein RibD"
species:195099 "Campylobacter jejuni RM1221" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR004794
InterPro:IPR016193 Pfam:PF00383 InterPro:IPR024072 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 RefSeq:YP_179765.1 ProteinModelPortal:Q5HSH0
STRING:Q5HSH0 GeneID:3232421 KEGG:cjr:CJE1794 PATRIC:20045408
OMA:ENPSVAC ProtClustDB:CLSK879337
BioCyc:CJEJ195099:GJC0-1828-MONOMER Uniprot:Q5HSH0
Length = 326
Score = 128 (50.1 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 142 AYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVE 201
A+V+LEPC+H G+TPPC + + D N I S G E L+ GI+V +
Sbjct: 93 AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIA-SGGAEFLKKQGIEVEFDIL 151
Query: 202 DELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYDAII 261
E K+L + F+ + G+ F + LS+NG ++ S Y ++ D ++
Sbjct: 152 KEEGKKLLKPFL-KWQKGQ-FKLFKLALSMNGSPFGKIVSNKL-SRTYAHKIRAVIDLLV 208
Query: 262 LSASSTKK 269
+ + +K
Sbjct: 209 VGGETIRK 216
Score = 102 (41.0 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIV-KDGKIVGEGFHPKAGQPHAEVFALRDA 133
FYM + A K T PNP VGCVI+ K+ KI+ H KAG HAE+ A+ A
Sbjct: 4 FYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHA 59
>UNIPROTKB|Q4K6X5 [details] [associations]
symbol:tadA "tRNA-specific adenosine deaminase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0008033 "tRNA
processing" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0016787 EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0008033
eggNOG:COG0590 HOGENOM:HOG000085050 OMA:MCAGLIV RefSeq:YP_262008.1
ProteinModelPortal:Q4K6X5 STRING:Q4K6X5 GeneID:3479339
KEGG:pfl:PFL_4928 PATRIC:19879331 ProtClustDB:CLSK868218
BioCyc:PFLU220664:GIX8-4969-MONOMER Uniprot:Q4K6X5
Length = 162
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 43/132 (32%), Positives = 67/132 (50%)
Query: 64 RIRCGQVQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH-PKAGQ 122
+IR + + +D F MR + LA A G+ VG V+V DG+++G G++ P +G
Sbjct: 3 QIRPAPIIDRSRDQDF-MREALALA--AQGAALGEVPVGAVLVLDGQVIGRGYNCPISGS 59
Query: 123 -P--HAEVFALRDAGELAE-----GATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGM 174
P HAE+ A+R+A + G+T YV+LEPC+ C ++ G
Sbjct: 60 DPSAHAEMVAIREAAQAVSNYRLPGSTLYVTLEPCSM------CAGLIVHSRIARVVYGA 113
Query: 175 LDPNP-IVNSKG 185
L+P IV S+G
Sbjct: 114 LEPKAGIVQSQG 125
>UNIPROTKB|Q886W8 [details] [associations]
symbol:PSPTO_1457 "Cytidine/deoxycytidylate deaminase
family protein" species:223283 "Pseudomonas syringae pv. tomato
str. DC3000" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
eggNOG:COG0590 EMBL:AE016853 GenomeReviews:AE016853_GR
HOGENOM:HOG000085050 HSSP:Q12178 OMA:MCAGLIV ProtClustDB:CLSK868218
RefSeq:NP_791283.1 ProteinModelPortal:Q886W8 GeneID:1183094
KEGG:pst:PSPTO_1457 PATRIC:19994158
BioCyc:PSYR223283:GJIX-1484-MONOMER Uniprot:Q886W8
Length = 169
Score = 131 (51.2 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 41/120 (34%), Positives = 61/120 (50%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH-PKAGQ-P--HAEVFALR 131
+D +MR + LA A G+ VG V+V +G+I+G G++ P +G P HAE+ A+R
Sbjct: 11 NDQHFMREALALA--AQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAIR 68
Query: 132 DAGELA-----EGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNP-IVNSKG 185
DA G+T YV+LEPC+ C ++ G L+P IV S+G
Sbjct: 69 DAARALGNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQG 122
>POMBASE|SPCC4G3.16 [details] [associations]
symbol:SPCC4G3.16 "CMP deaminase family/
methyltransferase bifunctional enzyme involved in riboflavin
biosynthesis and tRNA pseudouridine biosynthesis (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=ISO] InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383
PROSITE:PS00903 UniPathway:UPA00275 PomBase:SPCC4G3.16 Pfam:PF10294
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 GO:GO:0009982 InterPro:IPR019410
GO:GO:0031119 PIR:T41360 RefSeq:NP_587822.1 HSSP:P17618
ProteinModelPortal:P87241 STRING:P87241 EnsemblFungi:SPCC4G3.16.1
GeneID:2539515 KEGG:spo:SPCC4G3.16 eggNOG:COG0117 KO:K14655
OrthoDB:EOG4X3M9Q NextBio:20800676 GO:GO:0008835 Uniprot:P87241
Length = 405
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/124 (32%), Positives = 63/124 (50%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGF-HPKAGQPHAEV-----FALRDA 133
YM + + A K + S VG VIV++GKIV G+ + G HAE F L++
Sbjct: 261 YMLKALNEAKKCEPTDSAF-CVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNP 319
Query: 134 GELAEGATAYVSLEPCN-HYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDA 192
+ EGA Y ++EPC+ + CT+ ++ G L+P+ V +G++ L+ A
Sbjct: 320 TDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLKKA 379
Query: 193 GIDV 196
GI V
Sbjct: 380 GIVV 383
>UNIPROTKB|Q47XY3 [details] [associations]
symbol:CPS_3669 "Cytidine/deoxycytidylate deaminase
zinc-binding domain protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0590 HOGENOM:HOG000085050 KO:K11991 OMA:MCAGLIV
RefSeq:YP_270337.1 ProteinModelPortal:Q47XY3 SMR:Q47XY3
STRING:Q47XY3 GeneID:3520723 KEGG:cps:CPS_3669 PATRIC:21470265
BioCyc:CPSY167879:GI48-3691-MONOMER Uniprot:Q47XY3
Length = 182
Score = 130 (50.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 70 VQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA--GQP--HA 125
+++ ++ D +MRR ELA +A P VG V+V GKI+GEGF+ P HA
Sbjct: 15 IEDQERLDLTFMRRAFELAQQAE-QHDEIP-VGAVVVHQGKIIGEGFNQSIMLNDPSSHA 72
Query: 126 EVFALRDAGELAEG-----ATAYVSLEPC 149
E+ A+R AGE T YV+LEPC
Sbjct: 73 EMNAIRQAGEFLNNYRLLDCTLYVTLEPC 101
>TIGR_CMR|CPS_3669 [details] [associations]
symbol:CPS_3669 "cytidine/deoxycytidylate deaminase
zinc-binding domain protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=ISS] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0590
HOGENOM:HOG000085050 KO:K11991 OMA:MCAGLIV RefSeq:YP_270337.1
ProteinModelPortal:Q47XY3 SMR:Q47XY3 STRING:Q47XY3 GeneID:3520723
KEGG:cps:CPS_3669 PATRIC:21470265
BioCyc:CPSY167879:GI48-3691-MONOMER Uniprot:Q47XY3
Length = 182
Score = 130 (50.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 70 VQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA--GQP--HA 125
+++ ++ D +MRR ELA +A P VG V+V GKI+GEGF+ P HA
Sbjct: 15 IEDQERLDLTFMRRAFELAQQAE-QHDEIP-VGAVVVHQGKIIGEGFNQSIMLNDPSSHA 72
Query: 126 EVFALRDAGELAEG-----ATAYVSLEPC 149
E+ A+R AGE T YV+LEPC
Sbjct: 73 EMNAIRQAGEFLNNYRLLDCTLYVTLEPC 101
>UNIPROTKB|Q74H28 [details] [associations]
symbol:tadA "tRNA (Adenosine-34) deaminase" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000085050 OMA:MCAGLIV
RefSeq:NP_951127.1 ProteinModelPortal:Q74H28 GeneID:2688096
KEGG:gsu:GSU0065 PATRIC:22022869 ProtClustDB:CLSK827612
BioCyc:GSUL243231:GH27-124-MONOMER Uniprot:Q74H28
Length = 179
Score = 129 (50.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 38/112 (33%), Positives = 54/112 (48%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ--P--HAEVFAL 130
+DD ++M + + A KA P +G VIV+DG ++G G + + G P HAE+ A+
Sbjct: 10 RDDAYWMGKAIREAAKAAARDEV-P-IGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAI 67
Query: 131 RDAGELAE-----GATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDP 177
R A + GAT YV+LEPC C A+I G DP
Sbjct: 68 RQAARRSANWRLTGATLYVTLEPCLM------CMGAIILARLERVVFGCYDP 113
>TIGR_CMR|GSU_0065 [details] [associations]
symbol:GSU_0065 "cytidine/deoxycytidylate deaminase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000085050 OMA:MCAGLIV
RefSeq:NP_951127.1 ProteinModelPortal:Q74H28 GeneID:2688096
KEGG:gsu:GSU0065 PATRIC:22022869 ProtClustDB:CLSK827612
BioCyc:GSUL243231:GH27-124-MONOMER Uniprot:Q74H28
Length = 179
Score = 129 (50.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 38/112 (33%), Positives = 54/112 (48%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ--P--HAEVFAL 130
+DD ++M + + A KA P +G VIV+DG ++G G + + G P HAE+ A+
Sbjct: 10 RDDAYWMGKAIREAAKAAARDEV-P-IGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAI 67
Query: 131 RDAGELAE-----GATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDP 177
R A + GAT YV+LEPC C A+I G DP
Sbjct: 68 RQAARRSANWRLTGATLYVTLEPCLM------CMGAIILARLERVVFGCYDP 113
>SGD|S000006266 [details] [associations]
symbol:FCY1 "Cytosine deaminase" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IDA] [GO:0019858
"cytosine metabolic process" evidence=IMP] [GO:0004131 "cytosine
deaminase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0044206 "UMP salvage" evidence=IEA]
[GO:0008655 "pyrimidine-containing compound salvage" evidence=IMP]
[GO:0046087 "cytidine metabolic process" evidence=IMP] [GO:0003824
"catalytic activity" evidence=IEA] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
UniPathway:UPA00574 SGD:S000006266 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0008270 GO:GO:0004131 SUPFAM:SSF53927
EMBL:Z71255 EMBL:BK006949 eggNOG:COG0590 EMBL:Z49219 GO:GO:0008655
GO:GO:0019858 KO:K01485 GO:GO:0044206 EMBL:U55193 EMBL:AF005261
PIR:S54083 RefSeq:NP_015387.1 PDB:1OX7 PDB:1P6O PDB:1RB7 PDB:1UAQ
PDB:1YSB PDB:1YSD PDB:2O3K PDBsum:1OX7 PDBsum:1P6O PDBsum:1RB7
PDBsum:1UAQ PDBsum:1YSB PDBsum:1YSD PDBsum:2O3K
ProteinModelPortal:Q12178 SMR:Q12178 DIP:DIP-1662N IntAct:Q12178
MINT:MINT-392713 STRING:Q12178 PaxDb:Q12178 PeptideAtlas:Q12178
EnsemblFungi:YPR062W GeneID:856175 KEGG:sce:YPR062W CYGD:YPR062w
GeneTree:ENSGT00390000014126 HOGENOM:HOG000085050 OMA:AILHAEM
OrthoDB:EOG40ZV73 EvolutionaryTrace:Q12178 NextBio:981337
Genevestigator:Q12178 GermOnline:YPR062W GO:GO:0046087
Uniprot:Q12178
Length = 158
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 42/125 (33%), Positives = 59/125 (47%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELAEG-----ATAYVSLEP 148
P+ GC+I KDG ++G G F + H E+ L + G L EG T Y +L P
Sbjct: 32 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL-EGKVYKDTTLYTTLSP 90
Query: 149 CNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRL 208
C+ CT A+I G N SKG + L+ G +V V V+DE CK++
Sbjct: 91 CDM------CTGAIIMYGIPRCVVG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKI 140
Query: 209 NEAFI 213
+ FI
Sbjct: 141 MKQFI 145
>UNIPROTKB|Q83DS3 [details] [associations]
symbol:CBU_0622 "tRNA-specific adenosine deaminase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:AE016828 GenomeReviews:AE016828_GR HOGENOM:HOG000085050
KO:K11991 OMA:MCAGLIV RefSeq:NP_819652.2 ProteinModelPortal:Q83DS3
GeneID:1208507 KEGG:cbu:CBU_0622 PATRIC:17929929
ProtClustDB:CLSK914193 BioCyc:CBUR227377:GJ7S-620-MONOMER
Uniprot:Q83DS3
Length = 148
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 46/149 (30%), Positives = 64/149 (42%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH-P-KAGQP--HAEVFALRD 132
D +M + LA KA + P +G V+VK+ +IVG GF+ P P HAE+ ALR+
Sbjct: 3 DELFMHEALALAKKA-NENNEVP-IGAVLVKENEIVGHGFNEPITLNDPTAHAEILALRN 60
Query: 133 AGELAEG-----ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLE 187
A + T YV+LEPC C A+I G DP +
Sbjct: 61 AAKRVGNYRLVDTTLYVTLEPC------AMCVGAMIQARIKRLVFGAFDPRAGAVESVFQ 114
Query: 188 RLRDAGIDV----TVGVEDELCKRLNEAF 212
L + ++ T GV E C +AF
Sbjct: 115 LLNEPRLNHRIVWTSGVIAEACAEPLKAF 143
>TIGR_CMR|CBU_0622 [details] [associations]
symbol:CBU_0622 "zinc-binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISS] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000085050 KO:K11991
OMA:MCAGLIV RefSeq:NP_819652.2 ProteinModelPortal:Q83DS3
GeneID:1208507 KEGG:cbu:CBU_0622 PATRIC:17929929
ProtClustDB:CLSK914193 BioCyc:CBUR227377:GJ7S-620-MONOMER
Uniprot:Q83DS3
Length = 148
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 46/149 (30%), Positives = 64/149 (42%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH-P-KAGQP--HAEVFALRD 132
D +M + LA KA + P +G V+VK+ +IVG GF+ P P HAE+ ALR+
Sbjct: 3 DELFMHEALALAKKA-NENNEVP-IGAVLVKENEIVGHGFNEPITLNDPTAHAEILALRN 60
Query: 133 AGELAEG-----ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLE 187
A + T YV+LEPC C A+I G DP +
Sbjct: 61 AAKRVGNYRLVDTTLYVTLEPC------AMCVGAMIQARIKRLVFGAFDPRAGAVESVFQ 114
Query: 188 RLRDAGIDV----TVGVEDELCKRLNEAF 212
L + ++ T GV E C +AF
Sbjct: 115 LLNEPRLNHRIVWTSGVIAEACAEPLKAF 143
>UNIPROTKB|P68398 [details] [associations]
symbol:tadA "tRNA-specific adenosine deaminase monomer"
species:83333 "Escherichia coli K-12" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0002100 "tRNA wobble adenosine to
inosine editing" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008251 "tRNA-specific adenosine deaminase
activity" evidence=IDA] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0008270 SUPFAM:SSF53927 EMBL:D64044 EMBL:U36841
GO:GO:0008251 eggNOG:COG0590 HOGENOM:HOG000085050 EMBL:X72336
GO:GO:0002100 PIR:F65033 RefSeq:NP_417054.2 RefSeq:YP_490787.1
PDB:1Z3A PDBsum:1Z3A ProteinModelPortal:P68398 SMR:P68398
IntAct:P68398 EnsemblBacteria:EBESCT00000001603
EnsemblBacteria:EBESCT00000015854 GeneID:12932251 GeneID:947027
KEGG:ecj:Y75_p2512 KEGG:eco:b2559 PATRIC:32120517 EchoBASE:EB1346
EcoGene:EG11372 KO:K11991 OMA:NDEYYMR ProtClustDB:PRK10860
BioCyc:EcoCyc:EG11372-MONOMER BioCyc:ECOL316407:JW2543-MONOMER
BioCyc:MetaCyc:EG11372-MONOMER EvolutionaryTrace:P68398
Genevestigator:P68398 Uniprot:P68398
Length = 167
Score = 116 (45.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 43/148 (29%), Positives = 68/148 (45%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ--P--HAEVFALRDAG 134
++MR + LA +A P VG V+V + +++GEG++ G+ P HAE+ ALR G
Sbjct: 10 YWMRHALTLAKRAWDEREV-P-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 67
Query: 135 ELAEG-----ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERL 189
+ + AT YV+LEPC C A+I G D ++ L
Sbjct: 68 LVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVL 121
Query: 190 RDAG----IDVTVGV-EDELCKRLNEAF 212
G +++T G+ DE L++ F
Sbjct: 122 HHPGMNHRVEITEGILADECAALLSDFF 149
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 43/148 (29%), Positives = 73/148 (49%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA--GQPHAEVFAL-----RD 132
+M +E A K G T VGCV+V +G+++ G H + G HAE AL ++
Sbjct: 440 FMEMAIEEAEKC-GETQTQFNVGCVLVHNGQVISTG-HSRELPGNTHAEQCALEKYFSKN 497
Query: 133 AGE--LAEGATAYVSLEPCN-HYGRTPPCTEALIXXXXXXX-XXGMLDPNPIV-NSKGLE 187
GE + G + S+EPC+ PC + ++ G+L+P+ V N+ +
Sbjct: 498 GGEREVPAGTEIFTSMEPCSLRLSGNLPCVDRILQTKNIKTCFVGVLEPDIFVKNNSSYK 557
Query: 188 RLRDAGID-VTV-GVED---ELCKRLNE 210
+L D G++ + + G E+ E+ KR +E
Sbjct: 558 KLLDHGVEYIHIPGYEETCLEIAKRGHE 585
>UNIPROTKB|Q60C22 [details] [associations]
symbol:yfhC "Zinc-binding domain protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:AE017282 GenomeReviews:AE017282_GR HOGENOM:HOG000085050
OMA:MCAGLIV RefSeq:YP_112823.1 ProteinModelPortal:Q60C22 SMR:Q60C22
GeneID:3104826 KEGG:mca:MCA0289 PATRIC:22604319 Uniprot:Q60C22
Length = 137
Score = 104 (41.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 42/126 (33%), Positives = 57/126 (45%)
Query: 101 VGCVIVKDGKIVGEGFH-P-KAGQP--HAEVFALRDAG-ELAE----GATAYVSLEPCNH 151
+G V+VK+G+I+GEG + P P HAE+ ALR AG L T YV+LEPC
Sbjct: 14 IGAVLVKNGEILGEGHNQPISTHDPTAHAEIVALRAAGARLGNYRLVDTTLYVTLEPC-- 71
Query: 152 YGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAG-----IDVTVGVEDELCK 206
C A++ G DP L RL +A +++ GV E C
Sbjct: 72 ----AMCMGAILHARVGRLVFGAADPRRGAAISAL-RLNEAEFMNHRVELLEGVLAEECS 126
Query: 207 RLNEAF 212
+L F
Sbjct: 127 QLLRDF 132
>UNIPROTKB|Q9KTN7 [details] [associations]
symbol:VC_0864 "YfhC protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISS] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 KO:K11991 OMA:IMHAEIM PIR:D82271
RefSeq:NP_230511.1 ProteinModelPortal:Q9KTN7 DNASU:2614531
GeneID:2614531 KEGG:vch:VC0864 PATRIC:20080832
ProtClustDB:CLSK874134 Uniprot:Q9KTN7
Length = 193
Score = 110 (43.8 bits), Expect = 0.00056, P = 0.00056
Identities = 34/96 (35%), Positives = 48/96 (50%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA----GQPHAEVFALRD 132
D +MRR + LA +A P VG V+V+DG+I+ EG++ HAE+ +R
Sbjct: 28 DEQFMRRAIVLAAQAEAQGEV-P-VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRK 85
Query: 133 AGELAEG-----ATAYVSLEPCNHYGRTPPCTEALI 163
AG+ T YV+LEPC P C AL+
Sbjct: 86 AGKALSNYRLLDTTLYVTLEPC------PMCAGALL 115
>TIGR_CMR|VC_0864 [details] [associations]
symbol:VC_0864 "zinc-binding domain protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 KO:K11991 OMA:IMHAEIM PIR:D82271
RefSeq:NP_230511.1 ProteinModelPortal:Q9KTN7 DNASU:2614531
GeneID:2614531 KEGG:vch:VC0864 PATRIC:20080832
ProtClustDB:CLSK874134 Uniprot:Q9KTN7
Length = 193
Score = 110 (43.8 bits), Expect = 0.00056, P = 0.00056
Identities = 34/96 (35%), Positives = 48/96 (50%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA----GQPHAEVFALRD 132
D +MRR + LA +A P VG V+V+DG+I+ EG++ HAE+ +R
Sbjct: 28 DEQFMRRAIVLAAQAEAQGEV-P-VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRK 85
Query: 133 AGELAEG-----ATAYVSLEPCNHYGRTPPCTEALI 163
AG+ T YV+LEPC P C AL+
Sbjct: 86 AGKALSNYRLLDTTLYVTLEPC------PMCAGALL 115
>UNIPROTKB|Q8EC53 [details] [associations]
symbol:tadA "tRNA-specific adenosine deaminase TadA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000085050 KO:K11991 OMA:NDEYYMR HSSP:Q12178
RefSeq:NP_718845.2 ProteinModelPortal:Q8EC53 GeneID:1170979
KEGG:son:SO_3291 PATRIC:23526266 Uniprot:Q8EC53
Length = 157
Score = 105 (42.0 bits), Expect = 0.00064, P = 0.00064
Identities = 32/78 (41%), Positives = 41/78 (52%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ--P--HAEVFALRDAGEL 136
MR + +A KA P VG V+VKDG + G++ Q P HAE+ LR AG+
Sbjct: 1 MRVAMAMAEKAEAEGEV-P-VGAVLVKDGLQIATGYNLSISQHDPCAHAEILCLRAAGQT 58
Query: 137 AEG-----ATAYVSLEPC 149
E AT YV+LEPC
Sbjct: 59 VENYRLLDATLYVTLEPC 76
>TIGR_CMR|SO_3291 [details] [associations]
symbol:SO_3291 "cytidine/deoxycytidylate deaminase family
protein" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000085050 KO:K11991
OMA:NDEYYMR HSSP:Q12178 RefSeq:NP_718845.2
ProteinModelPortal:Q8EC53 GeneID:1170979 KEGG:son:SO_3291
PATRIC:23526266 Uniprot:Q8EC53
Length = 157
Score = 105 (42.0 bits), Expect = 0.00064, P = 0.00064
Identities = 32/78 (41%), Positives = 41/78 (52%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ--P--HAEVFALRDAGEL 136
MR + +A KA P VG V+VKDG + G++ Q P HAE+ LR AG+
Sbjct: 1 MRVAMAMAEKAEAEGEV-P-VGAVLVKDGLQIATGYNLSISQHDPCAHAEILCLRAAGQT 58
Query: 137 AEG-----ATAYVSLEPC 149
E AT YV+LEPC
Sbjct: 59 VENYRLLDATLYVTLEPC 76
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 427 418 0.00082 118 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 608 (65 KB)
Total size of DFA: 250 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.96u 0.11s 34.07t Elapsed: 00:00:02
Total cpu time: 33.97u 0.11s 34.08t Elapsed: 00:00:02
Start: Fri May 10 13:06:58 2013 End: Fri May 10 13:07:00 2013