BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014311
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 138/239 (57%), Gaps = 19/239 (7%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +Y R ++LA + +T PNP VGCVIVKDG+IVGEG+H +AG+PHAEV ALR AGE
Sbjct: 30 DEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGEK 89
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A+GATAYV+LEPC+H+GRTPPC +ALI DPNP V +GL RL+ AGIDV
Sbjct: 90 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDV 149
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQL 253
+ G+ ++LN+ F+ R TG P+ L+ S++G GE + QL
Sbjct: 150 SHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQL 209
Query: 254 LQEYDAIILSASSTKKYSIPA-------------SQEPDAN--QPFRIITVS-NHASPI 296
L+ IL++S+T PA + P N QP RI+ S N +P+
Sbjct: 210 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 268
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 138/239 (57%), Gaps = 19/239 (7%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +Y R ++LA + +T PNP VGCVIVKDG+IVGEG+H +AG+PHAEV ALR AGE
Sbjct: 8 DEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGEK 67
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
A+GATAYV+LEPC+H+GRTPPC +ALI DPNP V +GL RL+ AGIDV
Sbjct: 68 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDV 127
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQL 253
+ G+ ++LN+ F+ R TG P+ L+ S++G GE + QL
Sbjct: 128 SHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQL 187
Query: 254 LQEYDAIILSASSTKKYSIPA-------------SQEPDAN--QPFRIITVS-NHASPI 296
L+ IL++S+T PA + P N QP RI+ S N +P+
Sbjct: 188 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 246
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 6/215 (2%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
+YM+ ++LA + G T NP+VG V+VKDG+IVG G H K G+ HAEV A+ AG AE
Sbjct: 16 YYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 75
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTV 198
GA YV+LEPC+HYG+TPPC E +I M DPNP+V +G+ +++AGI+V
Sbjct: 76 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVRE 135
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEYD 258
G+ + +RLNE F+H + TG P+ TL+ S++G + G+ + Q Q+Y
Sbjct: 136 GILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYR 195
Query: 259 AI---ILSASSTKKYSIPA--SQEPDA-NQPFRII 287
IL T K P+ + P+ QP R+I
Sbjct: 196 KTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVI 230
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 154/284 (54%), Gaps = 14/284 (4%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFAL---RDAGEL 136
+ +R +ELA K +G +PNP VG V+VKDG+I+ EGFHP G PHAE A+ R GE
Sbjct: 17 FXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGED 76
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDV 196
GAT V+LEPC+H+G+TPPCT+ +I G DPNP V+ G+E+ R+ GI+V
Sbjct: 77 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 135
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQE 256
GV +E K+L E FI + +PF L+Y +++G + D G+ + ++ +
Sbjct: 136 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEX 195
Query: 257 ---YDAIILSASSTKKYSIPAS-QEPDANQPFRIITVSNHASPIRIPGLSEESSSKVIVF 312
Y A+++ A + K + + + + P R+I ++ + EE +++VIVF
Sbjct: 196 RNIYSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVILDRKGVLSGKVFRVFEE-NARVIVF 254
Query: 313 TDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVD 356
T+ E P K L +++++L Y SVLV+
Sbjct: 255 TESEEAEYPPHVEKA-----LSDCSVESILRNLYERDIDSVLVE 293
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRDAG 134
++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR G
Sbjct: 11 YWMRHALTLAKRAWDEREVP--VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 68
Query: 135 ELAEG-----ATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERL 189
+ + AT YV+LEPC C A+I G D ++ L
Sbjct: 69 LVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVL 122
Query: 190 RDAG----IDVTVGVEDELCKRLNEAFI 213
G +++T G+ + C L F
Sbjct: 123 HHPGMNHRVEITEGILADECAALLSDFF 150
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 150 NHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
+ CT A+I G N SKG + L+ G +V V V+DE CK+L
Sbjct: 95 DM------CTGAIIMYGIPRCVVG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKLM 144
Query: 210 EAFI 213
+ FI
Sbjct: 145 KQFI 148
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 150 NHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
+ CT A+I G N SKG + L+ G +V V V+DE CK+L
Sbjct: 95 DM------CTGAIIMYGIPRCVIG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKLM 144
Query: 210 EAFI 213
+ FI
Sbjct: 145 KQFI 148
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 150 NHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
CT A+I G N SKG + L+ G +V V V+DE CK+L
Sbjct: 95 EM------CTGAIIMYGIPRCVIG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKLM 144
Query: 210 EAFI 213
+ FI
Sbjct: 145 KQFI 148
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 35 PIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 150 NHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
+ CT A+I G N SKG + L+ G +V V V+DE CK++
Sbjct: 95 D------XCTGAIIXYGIPRCVVG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKIX 144
Query: 210 EAFI 213
+ FI
Sbjct: 145 KQFI 148
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 94
Query: 150 NHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
+ CT A+I G N SKG + L+ G +V V V+DE CK++
Sbjct: 95 DM------CTGAIIMYGIPRCVVG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKIM 144
Query: 210 EAFI 213
+ FI
Sbjct: 145 KQFI 148
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 32 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 91
Query: 150 NHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
+ CT A+I G N SKG + L+ G +V V V+DE CK++
Sbjct: 92 DM------CTGAIIMYGIPRCVVG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKIM 141
Query: 210 EAFI 213
+ FI
Sbjct: 142 KQFI 145
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALR 131
D ++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR
Sbjct: 18 DHEYWMRHALTLAKRAWDEREVP--VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 132 DAGELAEG-----ATAYVSLEPC 149
G + + T YV+LEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPC 98
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQP----HAEVFAL 130
++ ++M+ ++ + K++ + P +GCVIVKDG+I+G G + + HAE+ A+
Sbjct: 14 EEQTYFMQEALKESEKSL-QKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 71
Query: 131 RDAGELAEG------ATAYVSLEPC 149
+A EG T +V++EPC
Sbjct: 72 NEAN-AHEGNWRLLDTTLFVTIEPC 95
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH--PKAGQP--HAEVFALRDAGE 135
+++R V LA + V + P G VIVKDG I+ EG + + P HAEV A+R A +
Sbjct: 14 FLKRAVTLACEGVNAGIGGPF-GAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACK 72
Query: 136 L-----AEGATAYVSLEPC 149
+ + Y S EPC
Sbjct: 73 VLGAYQLDDCILYTSCEPC 91
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
Length = 164
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH--PKAGQP--HAEVFALRDAGE 135
+++R V LA + V + P G VIVKDG I+ EG + + P HAEV A+R A +
Sbjct: 6 FLKRAVTLACEGVNAGIGGPF-GAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACK 64
Query: 136 L-----AEGATAYVSLEPC 149
+ + Y S EPC
Sbjct: 65 VLGAYQLDDCILYTSCEPC 83
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 21/158 (13%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG--QP--HAEVFALR 131
+D ++M +E A KA P +G +I KD +++ + + QP HAE A+
Sbjct: 6 NDIYFMTLAIEEAKKA-AQLGEVP-IGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIE 63
Query: 132 DAGELA-----EGATAYVSLEPCNHYGRTPPCTEALIXXXXXXXXXGMLDPNPIVNSKGL 186
A ++ EG T YV+LEPC C ++ G DP + +
Sbjct: 64 RAAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLM 117
Query: 187 ERLRDAGID----VTVGVEDELCKRLNEAFIHRIVTGK 220
L+ + + V GV E C L F + K
Sbjct: 118 NLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 101 VGCVIVKDGKIVGEGFHP----KAGQPHAEVFALRDA-----GELAEGATAYVSLEPC 149
VG +IVK+G+I+ + + K HAE+ A+++A + EG YV+LEPC
Sbjct: 45 VGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPC 102
>pdb|3P73|A Chain A, Crystal Structures Of The Chicken Yf17.1 Molecule
pdb|3P77|A Chain A, Crystal Structures Of The Chicken Yf17.1 Molecule
Length = 275
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 32 LAFNQNSTFGFCNSLKRLAKSLTST--RKCRGGYRIRCGQVQNNDKDDGFYMRRCVELAT 89
+ + + FG NS R A+ + ++ + + + + Q ++D + + R E
Sbjct: 27 VGYVDDKIFGTYNSKSRTAQPIVEMLPQEDQEHWDTQTQKAQGGERDFDWNLNRLPERYN 86
Query: 90 KAVGSTSPNPMVGCVIVKDGKIVG 113
K+ GS + M GC I++DG I G
Sbjct: 87 KSKGSHTMQMMFGCDILEDGSIRG 110
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
Length = 189
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 17/85 (20%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHP----KAGQPHAEVFAL----- 130
+M + +A +A+ +T VGC++V + ++VG+G + K HAE+ A+
Sbjct: 29 WMEEAMHMAKEALENTEVP--VGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLD 86
Query: 131 --RDAG----ELAEGATAYVSLEPC 149
R +G E+ E YV++EPC
Sbjct: 87 WCRQSGKSPSEVFEHTVLYVTVEPC 111
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 15/70 (21%)
Query: 368 LKEGIEQNLLQKIVVEVLPV----WNGSD-GGNP--------HTLLNSLGKR--LILKNL 412
L E +E+NL K+ VE +PV W G D GNP H LL S K L LK++
Sbjct: 224 LNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDI 283
Query: 413 QPKMSSQSIV 422
Q +S S+V
Sbjct: 284 QVLVSELSMV 293
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 124 HAEVFALRDAGELA---EGATAYVSLEPCNHYGRTPPCTEAL 162
HAE+ A+ A E EGAT YV+L PC P C +A+
Sbjct: 104 HAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAI 139
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 101 VGCVIVKDGKIVGEGFHPKAG----QPHAEVFALRDAGELA-----EGATAYVSLEPCNH 151
+G V+V DG+++ + HAE+ +R A E GA YV+LEPC
Sbjct: 26 IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEPCTM 85
Query: 152 YGRTPPCTEALIXXXXXXXXXGMLDPN 178
C A+ G DP
Sbjct: 86 ------CAAAISFARIRRLYYGAQDPK 106
>pdb|1TUL|A Chain A, Structure Of Tlp20
Length = 108
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 46 LKRLAKSLTSTRKCRGGYRIRCGQVQNNDKDDGFYMRRCVEL 87
L+ L K+ ST C G Y + C VQN + D M C E+
Sbjct: 53 LRLLYKNAYSTVSC-GNYGVLCNLVQNGEYDLNAIMFNCAEI 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,984,269
Number of Sequences: 62578
Number of extensions: 545544
Number of successful extensions: 1273
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 27
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)