BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014311
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribD PE=3 SV=1
Length = 368
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 186/311 (59%), Gaps = 14/311 (4%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +MRRC+ LA A+G T+PNP+VG VIV+ +IVG+GFHP+AGQPH E+FAL +AG+
Sbjct: 4 DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDR 63
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
A+GAT YV+LEPCNH GRTPPCTEA+I+A + KVVVGM+DPNP+V KG+ RLR AGI+V
Sbjct: 64 AKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEV 123
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG--VAESGG--YYSQ 252
VGVE+E C+RLNEAF RI +PF +Y ++++G + V S + Q
Sbjct: 124 KVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQ 183
Query: 253 LLQEYDAIILSASSTKKYS-IPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKVIV 311
L + A+I+ ++ ++ + + + P R++ + PI L ++ +K +V
Sbjct: 184 LRSQCQAVIIGGNTVRRDNPLLTNHGVGEVNPLRVVLSRSLDLPIEAQ-LWDQDVAKTLV 242
Query: 312 FTDG--EITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLK 369
T+ + + +ET+ L QL AV++ Y VL + G +L
Sbjct: 243 ITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQRNCLQVLWECGG------ILAA 296
Query: 370 EGIEQNLLQKI 380
E I +QK+
Sbjct: 297 EAIAMGTVQKV 307
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain
VF5) GN=ribD PE=3 SV=1
Length = 356
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 177/316 (56%), Gaps = 13/316 (4%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D YM+ + LA K G T PNP VG V+VK+GKIVG G+H KAG+PHAEV AL AGE
Sbjct: 6 DKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQAGEK 65
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
A+GAT YV+LEPC H+GRTPPCT+A+I++ +K+VVV LDPNP+++ KG+E+LR+AGI+V
Sbjct: 66 AKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGIEV 125
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG----VAESGGYYSQ 252
VGV +E + LNE F I +P+ TL++ +++G + G ES
Sbjct: 126 DVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVAHI 185
Query: 253 LLQEYDAIILSASSTKKYS--IPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKVI 310
L +E A+++ ++ K + P QP RII P+ L+ E + I
Sbjct: 186 LRREATAVLVGVNTVIKDDPHLTVRFVPTEKQPVRIILDPELEVPLSAKVLNTEEAP-TI 244
Query: 311 VFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKE 370
V T E + KG++ + L NLK +L ++V+ G L LKE
Sbjct: 245 VITKKENEKAEKLKEKGVQVLILKGFNLKNILKKLKELEIMHLMVE--GGPRTLTSFLKE 302
Query: 371 GIEQNLLQKIVVEVLP 386
G +IVV + P
Sbjct: 303 G----FFDRIVVFIAP 314
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 146/239 (61%), Gaps = 19/239 (7%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +YM R ++LA + +T PNP VGCVIVKDG+IVGEG+H +AG+PHAEV ALR AGE
Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
A+GATAYV+LEPC+H+GRTPPC +ALI A V +VV M DPNP V +GL RL+ AGIDV
Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQL 253
+ G+ ++LN+ F+ R+ TG P+ L+ S++G GE + QL
Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182
Query: 254 LQEYDAIILSASSTKKYSIPA-------------SQEPDAN--QPFRIITVS-NHASPI 296
L+ IL++S+T PA + P N QP RI+ S N +P+
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241
>sp|P44326|RIBD_HAEIN Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3
SV=1
Length = 372
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 141/234 (60%), Gaps = 18/234 (7%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D +M+R ++LA K +T+PNP VGCV+VK+G+IVGEGFH KAGQPHAE AL AGE
Sbjct: 8 DCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQAGEN 67
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
A+GATAYV+LEPC HYGRTPPC LI+A V KV+ M DPNP V KGL+ L DAGI+
Sbjct: 68 AKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIES 127
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQE 256
TV + ++ +++N+ F+ R+ G PF L+ +S++G GE +G +Q+
Sbjct: 128 TVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQK 187
Query: 257 YDA---IILSASSTKKYSIPA-----SQEPD----------ANQPFRIITVSNH 292
A +LS S+T P+ + P+ QP R+I S H
Sbjct: 188 MRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQH 241
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus
pleuropneumoniae GN=ribD PE=3 SV=2
Length = 376
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEG 139
YMRR + LA + +G T+PNP+VGCVIVK+G+IV EG+H K G HAE A+ E G
Sbjct: 18 YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKEDLSG 77
Query: 140 ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVG 199
ATAYV+LEPC H+GRTPPC++ LI+ +KKV +G DPNP+V +G +LR AG++V G
Sbjct: 78 ATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEVVEG 137
Query: 200 VEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESG----GYYSQLLQ 255
+ E C LN F H I T +P+ ++Y ++ +G + GE +G Q
Sbjct: 138 LLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARARVQQTRH 197
Query: 256 EYDAIILSASST-KKYSIPASQEPDANQPFRIITVSNHASPI 296
+Y AI++ + + S+ P+A QP RI+ S +P+
Sbjct: 198 QYSAIMVGVDTVLADNPMLNSRMPNAKQPVRIVCDSQLRTPL 239
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens
GN=ribD PE=3 SV=1
Length = 371
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 161/287 (56%), Gaps = 9/287 (3%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
+YM +ELA + G T PNP+VG V+VK +IVG G H + G+ HAEV A+ AG LA+
Sbjct: 4 YYMNTAIELARRGEGQTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGSLAK 63
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198
GA YV+LEPC+HYG+TPPC E ++K+ +K+V + + DPNP+V KG+ L +AGI+V
Sbjct: 64 GADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKT 123
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQLLQ 255
G+ + + LN+ F+H + TG P+ TL+ S++G + G+ +E+ +Q +
Sbjct: 124 GLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYR 183
Query: 256 EYDAIILSASSTKKYSIPA--SQEPDA-NQPFRIITVSNHASPIRIPGLSEESSSKVIVF 312
+ IL + T K P+ + PDA QP R+I + P L++ ++ I
Sbjct: 184 KSHQRILVGAGTVKADNPSLTCRLPDAVKQPVRVILDTKLTVPETANVLTDGAAPTWIFT 243
Query: 313 TDGEITVEPDMGTK-GIETVNLH--QLNLKAVLDYCYSHGFCSVLVD 356
G + D T GI+ L ++++ VL +G SV V+
Sbjct: 244 AAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVE 290
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1
Length = 372
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 126/200 (63%), Gaps = 3/200 (1%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D FYM++ ++LA K +TSPNP VGC+IV + IVG G+H K G HAE++AL+ +GE
Sbjct: 3 DIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYALKTSGEK 62
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
A+GATAY++LEPC+H+G+TPPC AL K + +VV+ LDPNP V+ G++ L+ GI V
Sbjct: 63 AKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV 122
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQL 253
T+G + ++N+ F R+ TG P+ L+ S++G G+ ++ + Q
Sbjct: 123 TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQH 182
Query: 254 LQEYDAIILSASSTKKYSIP 273
++E I+S+S T + P
Sbjct: 183 VREKSDAIISSSETILFDNP 202
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain
168) GN=ribD PE=1 SV=1
Length = 361
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 133/215 (61%), Gaps = 6/215 (2%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
+YM+ ++LA + G T NP+VG V+VKDG+IVG G H K G+ HAEV A+ AG AE
Sbjct: 4 YYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAE 63
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198
GA YV+LEPC+HYG+TPPC E +I + +K+V V M DPNP+V +G+ +++AGI+V
Sbjct: 64 GADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVRE 123
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEG---VAESGGYYSQLLQ 255
G+ + +RLNE F+H + TG P+ TL+ S++G + G+ +E+ +Q +
Sbjct: 124 GILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYR 183
Query: 256 EYDAIILSASSTKKYSIPA--SQEPDAN-QPFRII 287
+ IL T K P+ + P+ QP R+I
Sbjct: 184 KTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVI 218
>sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=ribD PE=3 SV=1
Length = 375
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 155/292 (53%), Gaps = 16/292 (5%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
F+MR+ V L K PNP VGCVIVK+G ++GEG+H G PHAEV A++D E
Sbjct: 10 FFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLE 69
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198
GA +V+LEPC H+GRTPPC + LIK+KV V VG+LDP+P V KG+ RL+ AGI V V
Sbjct: 70 GAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYV 129
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESG----GYYSQLL 254
GV + K + ++++ G P+ ++ S++G D+ G SG +L
Sbjct: 130 GVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLR 189
Query: 255 QEYDAIILSASSTKKYSIP--ASQEPDAN----QPFRIITVSNHASPIRIPGLSEESSSK 308
E AII+ A T P +++ P + QP R++ S P+ S S
Sbjct: 190 AESQAIIVGA-RTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGST 248
Query: 309 VIVFTDG----EITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVD 356
+ T I D+G + E+ + HQ++LK +L Y G VLV+
Sbjct: 249 LFATTQQCPKEYIQKLKDLGVEVWESSS-HQVDLKGLLRYLAERGCLQVLVE 299
>sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=ribD PE=3 SV=2
Length = 371
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 157/292 (53%), Gaps = 16/292 (5%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
F+MR V L + PNP VGCVIVK+G I+G G+H G PHAEV A +D
Sbjct: 10 FFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQDQTSSLV 69
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198
GA YV+LEPC H+GRTPPC + LIK+KV V + +LDP+P V +G+ RL++AGI V V
Sbjct: 70 GADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYV 129
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGGY----YSQLL 254
G+ E K + ++H+ TG P+ ++ S++G D+ G SG +L
Sbjct: 130 GIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLR 189
Query: 255 QEYDAIILSASSTKKYSIP--ASQEPDAN----QPFRIITVSNHASPIRIPGLSEESSSK 308
E A+I+ S T P +++ P + QP R++ S + P+ + +S +
Sbjct: 190 AESQAVIV-GSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARVWNPDSGN- 247
Query: 309 VIVFTDGEITVE--PDMGTKGIETV--NLHQLNLKAVLDYCYSHGFCSVLVD 356
V++ T + + E + +G+E + Q++LK +L Y G VLV+
Sbjct: 248 VLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVE 299
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 105/145 (72%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
D FYM R ++L+ +TSPNP VGCVIV++ KIVGEG+H K G+ HAE+ AL AGE
Sbjct: 3 DRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEK 62
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
A+G+TAY++LEPCNH+G+TPPC +A+I++ +K V++ LDPNP V+ KG+ LR GI V
Sbjct: 63 AKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISV 122
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKP 221
+G+ + ++ N+ F R+ TG P
Sbjct: 123 KIGLMSKESQKYNKGFFKRMRTGLP 147
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD1 PE=3 SV=2
Length = 147
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 103/146 (70%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGE 135
+D FYM+R +EL+ +T+PNP VGCVIVK+ IVGEG+H +AG+ HAE+ AL AGE
Sbjct: 2 NDIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGE 61
Query: 136 LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGID 195
A+G TAYV+LEPCNH+G+TPPC ALIK+ + +VV+ +DPNP ++ G+ L+ GI
Sbjct: 62 KAQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGIC 121
Query: 196 VTVGVEDELCKRLNEAFIHRIVTGKP 221
V G+ + K+ N+ F R+ TG P
Sbjct: 122 VKTGLLSKESKQYNKGFFKRMKTGFP 147
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae
GN=ribD PE=3 SV=1
Length = 376
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 102/163 (62%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAE 138
F+MRR +E+ K + PNP VGCV+V++ +I+GEGFH AG PHAE A+++A
Sbjct: 10 FFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNASMPIS 69
Query: 139 GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198
G+ YVSLEPC+H+G PPC LIK KV +V V ++DP+P V +G+ LR AGI V V
Sbjct: 70 GSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYV 129
Query: 199 GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGE 241
G+ + + + ++++ P+ L+ SV+G V D G+
Sbjct: 130 GIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGK 172
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis
GN=ribD PE=3 SV=1
Length = 339
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 69 QVQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKAGQPHAEV 127
QV++ D+ G +E + + G+T P P VG VIV +G+IVG G AG HAEV
Sbjct: 5 QVKSIDEAMGL----AIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEV 60
Query: 128 FALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLE 187
ALR AG LA GA V++EPCNHYG+TPPC ALI+A+V VV + DPN I G
Sbjct: 61 VALRRAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPNGIAGG-GAG 119
Query: 188 RLRDAGIDVTVGV--EDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGH 234
RL AG+ V GV E L E ++H+ TG P T +Y S++G
Sbjct: 120 RLSAAGLQVRSGVLAEQVAAGPLRE-WLHKQRTGLPHVTWKYATSIDGR 167
>sp|O24750|RIBD_CORAM Riboflavin biosynthesis protein RibD OS=Corynebacterium
ammoniagenes GN=ribD PE=3 SV=1
Length = 337
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 110/225 (48%), Gaps = 27/225 (12%)
Query: 81 MRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKAGQPHAEVFALRDAGELAEG 139
+R + + G+TSPNP VG VI+ G+IVG G G HAEV AL DA EG
Sbjct: 19 LRTAMSAGWEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGKTEG 78
Query: 140 ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV- 198
ATA V+LEPC H GRT PCT+ALI+A +K V+ DPNP G + L DAGI+V
Sbjct: 79 ATAVVTLEPCRHTGRTGPCTQALIEAGIKDVLFLHSDPNPSAGG-GEQVLVDAGINVVQL 137
Query: 199 ----GVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESG----GYY 250
GV D L L + R P TL++ +++G G +G Y
Sbjct: 138 PSPEGVPDALIPWLKSVQLRR-----PHVTLKFAQTIDGFTAAADGTSQWITGEMARDYV 192
Query: 251 SQLLQEYDAIILSASS--------TKKYSIPASQEPDANQPFRII 287
+ DAII+ + T +Y +E +QP R++
Sbjct: 193 HADREHRDAIIIGTGTALIDNPSLTARYPDGTQRE---HQPRRVV 234
>sp|P87241|RIB2_SCHPO Diaminohydroxyphosphoribosylamino-pyrimidine deaminase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rib2 PE=3 SV=1
Length = 405
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGF-HPKAGQPHAE-----VFALRDA 133
YM + + A K + S VG VIV++GKIV G+ + G HAE F L++
Sbjct: 261 YMLKALNEAKKCEPTDSAF-CVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNP 319
Query: 134 GELAEGATAYVSLEPCN-HYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDA 192
+ EGA Y ++EPC+ + CT+ ++K K VV+G L+P+ V +G++ L+ A
Sbjct: 320 TDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLKKA 379
Query: 193 GIDV 196
GI V
Sbjct: 380 GIVV 383
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRDAG 134
++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR G
Sbjct: 10 YWMRHALTLAKRAWDEREVP--VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 67
Query: 135 ELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERL 189
+ + AT YV+LEPC C A+I +++ +VV G D ++ L
Sbjct: 68 LVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVL 121
Query: 190 RDAG----IDVTVGVEDELCKRLNEAFI 213
G +++T G+ + C L F
Sbjct: 122 HHPGMNHRVEITEGILADECAALLSDFF 149
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRDAG 134
++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR G
Sbjct: 10 YWMRHALTLAKRAWDEREVP--VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 67
Query: 135 ELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERL 189
+ + AT YV+LEPC C A+I +++ +VV G D ++ L
Sbjct: 68 LVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVL 121
Query: 190 RDAG----IDVTVGVEDELCKRLNEAFI 213
G +++T G+ + C L F
Sbjct: 122 HHPGMNHRVEITEGILADECAALLSDFF 149
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRDAG 134
++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR G
Sbjct: 10 YWMRHAMTLAKRAWDEREVP--VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 67
Query: 135 ELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERL 189
+ + AT YV+LEPC C A+I +++ +VV G D ++ L
Sbjct: 68 LVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVL 121
Query: 190 RDAG----IDVTVGVEDELCKRLNEAFI 213
G +++T G+ + C L F
Sbjct: 122 HHPGMNHRVEITEGILADECAALLSDFF 149
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRDAG 134
++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR G
Sbjct: 10 YWMRHAMTLAKRAWDEREVP--VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 67
Query: 135 ELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERL 189
+ + AT YV+LEPC C A+I +++ +VV G D ++ L
Sbjct: 68 LVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVL 121
Query: 190 RDAG----IDVTVGVEDELCKRLNEAFI 213
G +++T G+ + C L F
Sbjct: 122 HHPGMNHRVEITEGILADECAALLSDFF 149
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 23/155 (14%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALR 131
D YM+ ++ A KA +G V+V +G+I+ + + + HAE+ +
Sbjct: 3 QDELYMKEAIKEAKKA--EEKGEVPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVID 60
Query: 132 DAGELA-----EGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPN-----PIV 181
+A + EGAT YV+LEPC P C A++ ++V+KVV G DP ++
Sbjct: 61 EACKALGTWRLEGATLYVTLEPC------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLM 114
Query: 182 NSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRI 216
N ER +V GV +E C + AF +
Sbjct: 115 NLLQEERFNHQA-EVVSGVLEEECGGMLSAFFREL 148
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 99 PMVGCVIV-KDGKIVGEG----FHPKAGQPHAEVFALRDAGELA----EGATAYVSLEPC 149
P+ GC+I KDG ++G G F + H E+ L + G L + T Y +L PC
Sbjct: 32 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 91
Query: 150 NHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209
+ CT A+I + + VVG N SKG + L+ G +V V V+DE CK++
Sbjct: 92 DM------CTGAIIMYGIPRCVVG---ENVNFKSKGEKYLQTRGHEVVV-VDDERCKKIM 141
Query: 210 EAFI 213
+ FI
Sbjct: 142 KQFI 145
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALR 131
D ++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR
Sbjct: 7 DHEYWMRHALTLAKRAWDEREVP--VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 64
Query: 132 DAGELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGL 186
G + + T YV+LEPC C A++ +++ +VV G D +
Sbjct: 65 QGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLI 118
Query: 187 ERLRDAG----IDVTVGVEDELCKRLNEAFI 213
+ L G +++ GV + C L F
Sbjct: 119 DVLHHPGMNHRVEIIEGVLRDECATLLSDFF 149
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALR 131
D ++MR + LA +A VG V+V + +++GEG++ G+ HAE+ ALR
Sbjct: 7 DHEYWMRHALTLAKRAWDEREVP--VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 64
Query: 132 DAGELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGL 186
G + + T YV+LEPC C A++ +++ +VV G D +
Sbjct: 65 QGGLVLQNYRLLDTTLYVTLEPC------VMCAGAMVHSRIGRVVFGARDAKTGAAGSLI 118
Query: 187 ERLRDAG----IDVTVGVEDELCKRLNEAFI 213
+ L G +++ GV + C L F
Sbjct: 119 DVLHHPGMNHRVEIIEGVLRDECATLLSDFF 149
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 21/119 (17%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH----PKAGQPHAEVFALRD 132
D +MR + A KA T P VG V+V DGKI+ G++ + HAE+ +R+
Sbjct: 1110 DEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIRE 1167
Query: 133 AGE------LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKG 185
+ LA+ T YV+LEPC P C A+++A+V +V G PN ++ + G
Sbjct: 1168 GSKALRSWRLAD-TTLYVTLEPC------PMCAGAILQARVNTLVWGA--PNKLLGADG 1217
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGK-IVGEGFHPKAGQ----PHAEVFALR 131
D MR +ELA KA + P VG V+V D + I+GEG++ Q HAE+ ALR
Sbjct: 11 DEKMMRYALELADKA-EALGEIP-VGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALR 68
Query: 132 DAGELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLD 176
+ + + +T YV+LEPC C A++ +++K++V G D
Sbjct: 69 NGAKNIQNYRLLNSTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 112
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRD 132
D ++M+ ++ A A + +G ++V KI+G G++ Q HAE+ ALR+
Sbjct: 6 DSYWMKIALKYAYYA--EENGEVPIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALRE 63
Query: 133 AGELAE-----GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGM----LDPNPIV 181
AG + T YV+L+PC C A+I +++K++V G L NP +
Sbjct: 64 AGRNIKNYRLVNTTLYVTLQPC------MMCCGAIINSRIKRLVFGASYKDLKKNPFL 115
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 101 VGCVIVKDGKIVGEGFHP----KAGQPHAEVFALRDA-----GELAEGATAYVSLEPCNH 151
VG +IVK+G+I+ + + K HAE+ A+++A + EG YV+LEPC
Sbjct: 25 VGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPC-- 82
Query: 152 YGRTPPCTEALIKAKVKKVVVGMLD 176
C+ AL+ ++++KV+ LD
Sbjct: 83 ----IMCSYALVLSRIEKVIFSALD 103
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 19/109 (17%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK--AGQP--HAEVFAL 130
++ ++M+ ++ A K++ + P +GCVIVKDG+I+G G + + + Q HAE+ A+
Sbjct: 6 EEQTYFMQEALKEAEKSL-QKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 63
Query: 131 RDAGELAEG------ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVG 173
+A EG T +V++EPC C+ A+ A++ V+ G
Sbjct: 64 NEAN-AHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYG 105
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 15/82 (18%)
Query: 101 VGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALRDAGELAE-----GATAYVSLEPCNH 151
+G ++V +I+G G++ + HAE+ ALR AG+ + T YV+L+PC
Sbjct: 28 IGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGAGKKIKNYRLLNTTLYVTLQPC-- 85
Query: 152 YGRTPPCTEALIKAKVKKVVVG 173
C A+I++++K++V G
Sbjct: 86 ----IMCCGAIIQSRIKRLVFG 103
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 19/109 (17%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQP----HAEVFAL 130
++ ++M+ ++ A K++ + P +GCVIVKDG+I+G G + + HAE+ A+
Sbjct: 6 EEQTYFMQEALKEAEKSL-QKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 63
Query: 131 RDAGELAEG------ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVG 173
+A EG T +V++EPC C+ A+ A++ V+ G
Sbjct: 64 NEAN-AHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYG 105
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 19/109 (17%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQP----HAEVFAL 130
++ ++M+ ++ A K++ + P +GCVIVKDG+I+G G + + HAE+ A+
Sbjct: 6 EEQTYFMQEALKEAEKSL-QKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 63
Query: 131 RDAGELAEG------ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVG 173
+A EG T +V++EPC C+ A+ A++ V+ G
Sbjct: 64 NEAN-AHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYG 105
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 19/109 (17%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQP----HAEVFAL 130
++ ++M+ ++ A K++ + P +GCVIVKDG+I+G G + + HAE+ A+
Sbjct: 6 EEQTYFMQEALKEAEKSL-QKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 63
Query: 131 RDAGELAEG------ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVG 173
+A EG T +V++EPC C+ A+ A++ V+ G
Sbjct: 64 NEAN-AHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYG 105
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 19/109 (17%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQP----HAEVFAL 130
++ ++M+ ++ A K++ + P +GCVIVKDG+I+G G + + HAE+ A+
Sbjct: 6 EEQTYFMQEALKEAEKSL-QKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 63
Query: 131 RDAGELAEG------ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVG 173
+A EG T +V++EPC C+ A+ A++ V+ G
Sbjct: 64 NEAN-AHEGNWRLLDTTLFVTIEPC------VMCSGAIGLARIPHVIYG 105
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 99 PMVGCVIVKDGKIVGEGFHPKAGQP----HAEVFALRDAGELA----EGATAYVSLEPCN 150
P+ C+I D ++G+G + + + H E+ AL +AG L + T Y +L PC+
Sbjct: 26 PIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85
Query: 151 HYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLR-DAGIDVTVGVEDELCKRLN 209
CT A++ K+VV+G VN G E+L + G++V V + D+ C L
Sbjct: 86 M------CTGAILLYGFKRVVMG-----ENVNFLGNEKLLIENGVEV-VNLNDQECIDLM 133
Query: 210 EAFI 213
FI
Sbjct: 134 AKFI 137
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQ----PHAEVFALR 131
D Y +C K P VG V+V + I+G+G + HAE+ ALR
Sbjct: 3 DSDKYFMKCAIFLAKISEMIGEVP-VGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKALR 61
Query: 132 DAGELAEG-----ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVG 173
+ + + T YV+LEPC C A+I +++ ++V G
Sbjct: 62 NGAKFLKNYRLLHTTLYVTLEPC------IMCYGAIIHSRISRLVFG 102
>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1
SV=1
Length = 156
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH--PKAGQP--HAEVFALRDAGE 135
+++R V LA + V + P G VIVKDG I+ EG + + P HAEV A+R A +
Sbjct: 6 FLKRAVTLACEGVNAGIGGPF-GAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACK 64
Query: 136 L-----AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKV 170
+ + Y S EPC P C A+ A+ K V
Sbjct: 65 VLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAV 98
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 101 VGCVIVKDGKIVG-----EGFH-PKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGR 154
VG V+V G+++ EG P A HAE+ LR+AG A G YV+LEPC
Sbjct: 394 VGAVLVLPGRVLRAHNRVEGLRDPTA---HAEMLLLREAGPEARGGRLYVTLEPCLM--- 447
Query: 155 TPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV--GVEDELCKRLNEAF 212
C AL +A V +VV G + + L R G+ GV + C +L F
Sbjct: 448 ---CHHALAQAGV-EVVYGAEN----LKEGALTRF---GLPTRARGGVRERECAKLLRDF 496
Query: 213 IHRIVTG 219
R+ G
Sbjct: 497 FARLREG 503
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 101 VGCVIVKDGKIVG-----EGFH-PKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGR 154
VG V+V G+++ EG P A HAE+ LR+AG A G YV+LEPC
Sbjct: 394 VGAVLVLPGRVLRAHNRVEGLRDPTA---HAEMLLLREAGPEARGGRLYVTLEPCLM--- 447
Query: 155 TPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV--GVEDELCKRLNEAF 212
C AL +A V +VV G + + L R G+ GV + C +L F
Sbjct: 448 ---CHHALAQAGV-EVVYGAEN----LKEGALTRF---GLPTRARGGVRERECAKLLRDF 496
Query: 213 IHRIVTG 219
R+ G
Sbjct: 497 FARLREG 503
>sp|P00814|DCTD_BPT2 Deoxycytidylate deaminase OS=Enterobacteria phage T2 GN=CD PE=1
SV=1
Length = 188
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 15/78 (19%)
Query: 124 HAEV----FALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNP 179
HAE+ FA R+ G EGAT YV+L PC P C +A+ ++ +KK+V
Sbjct: 104 HAELNAILFAARN-GSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYCETYDK- 155
Query: 180 IVNSKGLER-LRDAGIDV 196
N G + LR+AGI+V
Sbjct: 156 --NKPGWDDILRNAGIEV 171
>sp|P16006|DCTD_BPT4 Deoxycytidylate deaminase OS=Enterobacteria phage T4 GN=CD PE=1
SV=1
Length = 193
Score = 38.5 bits (88), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 15/78 (19%)
Query: 124 HAEV----FALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNP 179
HAE+ FA R+ G EGAT YV+L PC P C +A+ ++ +KK+V
Sbjct: 104 HAELNAILFAARN-GSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYCETYDK- 155
Query: 180 IVNSKGLER-LRDAGIDV 196
N G + LR+AGI+V
Sbjct: 156 --NKPGWDDILRNAGIEV 171
>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans
GN=ZK643.2 PE=3 SV=1
Length = 197
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 29/103 (28%)
Query: 91 AVGSTSPNPMVGCVIV-KDGKIVGEGFH-----------------PKAGQP----HAEVF 128
++ S PN VGCVIV KD IV G++ P+ + HAE+
Sbjct: 62 SLRSKDPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMN 121
Query: 129 ALRDA-GELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKV 170
A+ + T YV+L PCN C + LI+++VKKV
Sbjct: 122 AIINKRCTTLHDCTVYVTLFPCN------KCAQMLIQSRVKKV 158
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2
SV=2
Length = 214
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 70 VQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHP----KAGQPHA 125
+Q +D + +M + ++A +A+ + VGC++V + +I+G+G + K HA
Sbjct: 14 LQPSDSEVQTWMAKAFDMAVEALENGEVP--VGCLMVYNNEIIGKGRNEVNETKNATRHA 71
Query: 126 EVFAL-----------RDAGELAEGATAYVSLEPC 149
E+ AL +D E+ E YV++EPC
Sbjct: 72 EMVALDQVLDWCRLREKDCKEVCEQTVLYVTVEPC 106
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad2 PE=3 SV=2
Length = 389
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 102 GCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGE-----LAEGATAYVSLEPCNHY 152
CV V G+++G GF+ +G HAE+ A+ E + + T YV++EPC
Sbjct: 240 SCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEKILEHYPASVFKETTLYVTVEPCLM- 298
Query: 153 GRTPPCTEALIKAKVKKVVVG 173
C AL + +K V G
Sbjct: 299 -----CAAALKQLHIKAVYFG 314
>sp|Q5T6F2|UBAP2_HUMAN Ubiquitin-associated protein 2 OS=Homo sapiens GN=UBAP2 PE=1 SV=1
Length = 1119
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 9/127 (7%)
Query: 28 SSPTLAFNQNSTFG---FCNSLKRLAKSLTSTRKCRGGYRIRCGQVQNNDKDDGFYMRRC 84
S+PT F Q S +G + L + + +GGY G Q +K G +
Sbjct: 946 STPTPPFQQASGYGQHGYSTGYDDLTQGTAAGDYSKGGY---AGSSQAPNKSAGSGPGKG 1002
Query: 85 VELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYV 144
V +++ G M G V K +GFH P + L G LA GA
Sbjct: 1003 VSVSSSTTGLPD---MTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGY 1059
Query: 145 SLEPCNH 151
+ P H
Sbjct: 1060 APPPFLH 1066
>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1
Length = 178
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 37/109 (33%)
Query: 91 AVGSTSPNPMVG-CVIVKDGKIVGEGFHPKAGQP-------------------------- 123
A S PN VG C++ + KIVG G++ G P
Sbjct: 27 AQRSKDPNSQVGACIVNSENKIVGIGYN---GMPNGCSDDQLPWRRTAKNKLDTKYPYVC 83
Query: 124 HAEVFALRDAGEL-AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVV 171
HAE+ A+ + +G + YV+L PCN C + +I+A +K+V+
Sbjct: 84 HAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKEVI 126
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2
Length = 178
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 37/109 (33%)
Query: 91 AVGSTSPNPMVG-CVIVKDGKIVGEGFHPKAGQP-------------------------- 123
A S PN VG C++ + KIVG G++ G P
Sbjct: 27 AQRSKDPNSQVGACIVNSENKIVGIGYN---GMPNGCSDDVLPWRRTAENKLDTKYPYVC 83
Query: 124 HAEVFALRDAGEL-AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVV 171
HAE+ A+ + +G + YV+L PCN C + +I+A +K+V+
Sbjct: 84 HAELNAIMNKNSTDVKGCSMYVALFPCNE------CAKLIIQAGIKEVI 126
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2
SV=1
Length = 191
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHP----KAGQPHAEVFAL----- 130
+M + +++A A+ +T VGC++V + ++VG+G + K HAE+ A+
Sbjct: 25 WMEQAMQMAKDALDNTEVP--VGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALD 82
Query: 131 ------RDAGELAEGATAYVSLEPC 149
R E+ E YV++EPC
Sbjct: 83 WCRRRGRSPSEVFEHTVLYVTVEPC 107
>sp|P70720|FABG_AGGAC 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aggregatibacter
actinomycetemcomitans GN=fabG PE=3 SV=1
Length = 242
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 188 RLRDAGIDVTVGVEDELCK-RLNEA-FIHRIVT--GKPFATLRYTLSVNGHVLDQLGEGV 243
RL AG D+ V C+ R+ EA + + V G+ L++ +S D+L V
Sbjct: 21 RLAQAGFDIVVH-----CRSRIEEAEAVAQAVRELGQNARVLQFDVSCRSEAADKLTADV 75
Query: 244 AESGGYYSQLLQEYDAIILSASSTKKYSIPASQEPDANQPFR--IITVSNHASPIRIPGL 301
G YY ++L+A T+ + PA + D ++ R + N PI +P +
Sbjct: 76 EAHGAYYG--------VVLNAGLTRDNAFPALTDEDWDRVLRTNLDGFYNVLHPIMMPMI 127
Query: 302 SEESSSKVIVFT 313
+ +++ T
Sbjct: 128 RRRKAGRIVCIT 139
>sp|Q87D24|RSMG_XYLFT Ribosomal RNA small subunit methyltransferase G OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rsmG PE=3
SV=1
Length = 212
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 187 ERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAES 246
E +R G+ VGV + + L+EA ++ +T + TL ++V GH+L G +A
Sbjct: 114 EVVRQLGLS-NVGVSEVRAEALDEALMYEHLTARALDTLNGIVTVGGHLLKSEGTLLAMK 172
Query: 247 GGY 249
G Y
Sbjct: 173 GAY 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,911,614
Number of Sequences: 539616
Number of extensions: 7294660
Number of successful extensions: 18990
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 18948
Number of HSP's gapped (non-prelim): 94
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)