Query 014311
Match_columns 427
No_of_seqs 249 out of 1858
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02807 diaminohydroxyphospho 100.0 4E-82 8.7E-87 639.5 36.0 350 73-427 28-380 (380)
2 PRK10786 ribD bifunctional dia 100.0 2.2E-76 4.7E-81 598.4 35.5 338 77-425 3-364 (367)
3 TIGR00326 eubact_ribD riboflav 100.0 1.1E-73 2.3E-78 575.9 33.7 334 81-423 1-343 (344)
4 PRK14719 bifunctional RNAse/5- 100.0 3.2E-51 6.9E-56 411.8 27.7 279 127-426 35-354 (360)
5 COG0117 RibD Pyrimidine deamin 100.0 2.8E-47 6E-52 328.7 14.8 143 74-216 3-145 (146)
6 COG1985 RibD Pyrimidine reduct 100.0 1.5E-39 3.3E-44 306.4 20.1 204 218-427 1-216 (218)
7 PRK05625 5-amino-6-(5-phosphor 100.0 1.3E-35 2.8E-40 280.9 21.7 197 220-426 2-213 (217)
8 TIGR01508 rib_reduct_arch 2,5- 100.0 2.5E-35 5.5E-40 277.6 21.3 194 221-424 1-207 (210)
9 TIGR00227 ribD_Cterm riboflavi 100.0 2.9E-35 6.3E-40 277.9 19.9 201 219-427 1-216 (216)
10 PRK14059 hypothetical protein; 100.0 5.1E-35 1.1E-39 282.1 20.7 201 216-427 26-248 (251)
11 PRK10860 tRNA-specific adenosi 100.0 5.1E-33 1.1E-37 252.9 13.5 137 73-217 9-158 (172)
12 cd01284 Riboflavin_deaminase-r 100.0 6.7E-32 1.5E-36 230.2 13.6 113 81-193 1-115 (115)
13 PF01872 RibD_C: RibD C-termin 100.0 1.1E-30 2.4E-35 243.7 16.7 183 221-423 1-200 (200)
14 COG0590 CumB Cytosine/adenosin 100.0 7.1E-30 1.5E-34 228.2 11.3 133 74-214 5-151 (152)
15 TIGR02571 ComEB ComE operon pr 100.0 1.7E-28 3.7E-33 218.7 15.4 114 73-198 2-137 (151)
16 PHA02588 cd deoxycytidylate de 100.0 1.6E-28 3.4E-33 222.8 15.1 123 76-210 2-163 (168)
17 cd01286 deoxycytidylate_deamin 99.9 2.3E-25 5E-30 194.6 11.9 93 77-178 1-121 (131)
18 COG2131 ComEB Deoxycytidylate 99.9 4.1E-24 8.8E-29 189.8 14.2 115 75-198 7-150 (164)
19 cd01285 nucleoside_deaminase N 99.9 5.3E-24 1.2E-28 180.3 11.3 92 81-180 1-102 (109)
20 PF00383 dCMP_cyt_deam_1: Cyti 99.9 7.1E-23 1.5E-27 170.8 9.8 92 75-174 2-102 (102)
21 cd00786 cytidine_deaminase-lik 99.9 4E-22 8.6E-27 165.1 9.7 87 81-174 1-95 (96)
22 KOG1018 Cytosine deaminase FCY 99.9 5.7E-22 1.2E-26 179.1 10.5 141 73-220 7-166 (169)
23 KOG3127 Deoxycytidylate deamin 99.9 4.5E-21 9.8E-26 175.7 12.1 158 27-204 28-212 (230)
24 cd00209 DHFR Dihydrofolate red 99.6 8.3E-14 1.8E-18 125.6 15.4 150 223-426 1-157 (158)
25 COG0262 FolA Dihydrofolate red 99.5 4.9E-13 1.1E-17 121.7 16.0 154 223-424 2-159 (167)
26 cd01283 cytidine_deaminase Cyt 99.4 2.2E-12 4.8E-17 109.6 10.0 90 82-179 2-104 (112)
27 KOG2771 Subunit of tRNA-specif 98.9 3.5E-09 7.6E-14 103.8 7.6 122 75-206 165-338 (344)
28 PTZ00164 bifunctional dihydrof 98.8 1.5E-07 3.2E-12 99.4 15.5 153 220-420 7-177 (514)
29 PRK00478 scpA segregation and 98.6 5.1E-07 1.1E-11 95.4 15.0 147 223-426 2-151 (505)
30 PF14439 Bd3614-deam: Bd3614-l 98.6 1.4E-07 3E-12 79.0 7.6 76 99-180 8-119 (136)
31 TIGR01354 cyt_deam_tetra cytid 98.3 6.4E-06 1.4E-10 71.7 10.1 79 80-166 3-94 (127)
32 PRK10769 folA dihydrofolate re 98.2 1.3E-05 2.8E-10 72.4 11.7 137 223-417 2-141 (159)
33 PF00186 DHFR_1: Dihydrofolate 98.0 0.0001 2.2E-09 66.7 13.1 140 223-418 2-145 (161)
34 PRK06848 hypothetical protein; 97.1 0.005 1.1E-07 54.4 10.6 82 76-166 6-108 (139)
35 PRK05578 cytidine deaminase; V 96.8 0.015 3.1E-07 51.0 10.3 80 79-166 5-97 (131)
36 PRK12411 cytidine deaminase; P 96.4 0.033 7.1E-07 48.8 10.1 80 78-165 4-96 (132)
37 KOG1324 Dihydrofolate reductas 96.2 0.14 3E-06 46.8 13.0 128 222-390 3-144 (190)
38 TIGR01355 cyt_deam_dimer cytid 96.1 0.035 7.6E-07 54.6 9.4 82 76-165 21-111 (283)
39 COG0295 Cdd Cytidine deaminase 96.1 0.032 7E-07 48.8 8.1 79 80-166 8-99 (134)
40 PRK08298 cytidine deaminase; V 95.9 0.056 1.2E-06 47.6 9.2 81 77-167 4-101 (136)
41 PLN02402 cytidine deaminase 95.7 0.072 1.6E-06 52.8 9.9 81 77-165 25-114 (303)
42 PF08210 APOBEC_N: APOBEC-like 95.7 0.048 1E-06 50.6 8.2 110 97-213 22-158 (188)
43 PRK09027 cytidine deaminase; P 95.7 0.073 1.6E-06 52.7 9.9 82 77-165 49-139 (295)
44 PRK09027 cytidine deaminase; P 95.0 0.14 3.1E-06 50.7 9.4 84 76-167 188-286 (295)
45 PLN02182 cytidine deaminase 94.1 0.67 1.4E-05 46.7 11.7 82 77-166 45-143 (339)
46 KOG0833 Cytidine deaminase [Nu 93.8 0.66 1.4E-05 42.1 10.1 84 84-174 27-125 (173)
47 PF14437 MafB19-deam: MafB19-l 91.1 0.36 7.7E-06 42.8 4.7 48 123-176 81-136 (146)
48 TIGR01355 cyt_deam_dimer cytid 83.0 6 0.00013 39.1 8.4 81 78-166 175-272 (283)
49 PLN02402 cytidine deaminase 82.7 5 0.00011 40.0 7.7 55 77-133 192-251 (303)
50 PF14440 XOO_2897-deam: Xantho 77.8 1.4 3E-05 37.9 1.7 56 120-178 43-103 (118)
51 PF08973 TM1506: Domain of unk 68.7 13 0.00029 32.6 5.7 94 81-199 1-94 (134)
52 PF14431 YwqJ-deaminase: YwqJ- 65.2 7.3 0.00016 33.6 3.4 39 123-167 67-125 (125)
53 PF14424 Toxin-deaminase: The 51.7 20 0.00042 31.4 3.8 39 122-166 73-119 (133)
54 PF04263 TPK_catalytic: Thiami 45.3 51 0.0011 28.3 5.4 39 325-364 57-98 (123)
55 PF08211 dCMP_cyt_deam_2: Cyti 42.9 86 0.0019 27.2 6.3 55 78-133 34-92 (124)
56 cd02071 MM_CoA_mut_B12_BD meth 40.5 67 0.0015 27.2 5.4 42 337-381 66-107 (122)
57 PRK05579 bifunctional phosphop 37.2 63 0.0014 33.6 5.5 177 168-376 7-229 (399)
58 PRK00881 purH bifunctional pho 35.5 6E+02 0.013 27.5 12.8 107 75-198 395-505 (513)
59 PF14428 SCP1201-deam: SCP1.20 34.3 40 0.00087 29.6 3.0 51 122-175 68-123 (135)
60 TIGR02429 pcaI_scoA_fam 3-oxoa 33.6 2.2E+02 0.0047 27.2 8.1 60 106-174 16-78 (222)
61 PF02579 Nitro_FeMo-Co: Dinitr 32.6 54 0.0012 25.8 3.4 58 148-212 34-92 (94)
62 COG2185 Sbm Methylmalonyl-CoA 32.1 69 0.0015 28.5 4.1 42 336-381 78-120 (143)
63 TIGR00355 purH phosphoribosyla 28.8 1.3E+02 0.0029 32.3 6.2 86 102-198 413-503 (511)
64 KOG1783 Small nuclear ribonucl 27.6 86 0.0019 24.5 3.4 40 74-114 33-72 (77)
65 cd07995 TPK Thiamine pyrophosp 27.2 1.1E+02 0.0025 28.4 5.0 41 323-364 60-104 (208)
66 cd00562 NifX_NifB This CD repr 27.1 2.1E+02 0.0045 22.7 6.0 39 156-200 51-89 (102)
67 COG1433 Uncharacterized conser 26.6 1.1E+02 0.0024 26.3 4.4 41 154-200 53-93 (121)
68 TIGR03702 lip_kinase_YegS lipi 26.2 1.8E+02 0.0039 28.5 6.5 64 322-387 22-88 (293)
69 smart00552 ADEAMc tRNA-specifi 24.9 1.4E+02 0.003 30.8 5.5 10 140-149 118-127 (374)
70 PF13540 RCC1_2: Regulator of 24.2 1.2E+02 0.0026 19.0 3.2 18 101-118 10-27 (30)
71 PF00781 DAGK_cat: Diacylglyce 24.0 2.7E+02 0.0058 23.4 6.4 53 334-390 37-91 (130)
72 cd02072 Glm_B12_BD B12 binding 23.6 4E+02 0.0087 23.1 7.3 64 321-391 21-88 (128)
73 PLN02891 IMP cyclohydrolase 23.5 1.8E+02 0.004 31.4 6.1 86 102-198 450-539 (547)
74 COG3911 Predicted ATPase [Gene 23.2 84 0.0018 28.5 3.1 27 351-378 10-36 (183)
75 TIGR01378 thi_PPkinase thiamin 22.6 1.4E+02 0.003 27.9 4.6 28 336-364 73-100 (203)
76 PF13344 Hydrolase_6: Haloacid 22.5 90 0.002 25.5 3.0 64 306-376 30-100 (101)
77 PRK13054 lipid kinase; Reviewe 21.4 2.6E+02 0.0056 27.5 6.5 63 322-386 26-91 (300)
78 COG0106 HisA Phosphoribosylfor 21.0 1.5E+02 0.0033 28.6 4.6 22 154-175 85-106 (241)
79 PF02593 dTMP_synthase: Thymid 20.6 1.7E+02 0.0037 27.9 4.7 89 137-236 49-145 (217)
80 PRK13337 putative lipid kinase 20.4 2.5E+02 0.0055 27.6 6.2 61 322-386 27-90 (304)
No 1
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=100.00 E-value=4e-82 Score=639.54 Aligned_cols=350 Identities=66% Similarity=1.109 Sum_probs=321.5
Q ss_pred CChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCC
Q 014311 73 NDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHY 152 (427)
Q Consensus 73 ~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~ 152 (427)
..++|++||++|+++|+++.+.++|||+||||||++|+||++|+|...+.+|||++||++|+..+.|||||||+|||+|+
T Consensus 28 ~~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~g~~HAEi~Ai~~a~~~~~g~tlyvTLEPC~h~ 107 (380)
T PLN02807 28 AGDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHY 107 (380)
T ss_pred CCchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHhhhhcCCcEEEEEcCCCcCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccC
Q 014311 153 GRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVN 232 (427)
Q Consensus 153 g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLD 232 (427)
||||||+.||+++||+|||||..||++.+.++|.++|+++||+|..|++++||.++++.||+|.+++||||++|+|+|||
T Consensus 108 Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~V~~g~~~~e~~~l~~~f~~~~~~~rP~V~lK~A~SlD 187 (380)
T PLN02807 108 GRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEVTVGVEEELCRKLNEAFIHRMLTGKPFVTLRYSMSMN 187 (380)
T ss_pred CCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCEEEeCcCHHHHHHHHHHHHHHHhhccccEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCccccchHHHHHhhccCEEEEccccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCCccccCCCceEEEE
Q 014311 233 GHVLDQLGEGVAESGGYYSQLLQEYDAIILSASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKVIVF 312 (427)
Q Consensus 233 G~Ia~~~g~~~wi~~~~~~~~r~~~DaiLvG~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~~~v~ 312 (427)
|+||...|++.|.++.++|++|+++||||+|+|+..|||.|++|.+..++|++||+|+++++|.+.++|+.....|+||+
T Consensus 188 Gkia~~~g~s~~~s~~~vh~lRa~~DAIlVG~Tv~~DnP~Lt~R~~~~~~PiRVVld~~l~~p~~~~i~~~~~~~~~iv~ 267 (380)
T PLN02807 188 GCLLNQIGEGADDAGGYYSQLLQEYDAVILSSALADADPLPLSQEAGAKQPLRIIIARSESSPLQIPSLREESAAKVLVL 267 (380)
T ss_pred CCeeCCCCCChhhhhHHHHHHHhhCCEEEEcCEeeccCCCCccCCCCCCCCEEEEEcCCCCCCCcceecccCCCCCEEEE
Confidence 99999999999999999999999999999998899999999999875689999999999999999999975556689999
Q ss_pred ecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecC---CcccHHHHHHHHHHCCCccEEEEEEEeeEe
Q 014311 313 TDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRG---NYGDLEMLLKEGIEQNLLQKIVVEVLPVWN 389 (427)
Q Consensus 313 t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~---GGg~L~~l~~sfl~~gLvDEl~l~i~P~ll 389 (427)
+.+..+....++..|++++..+++|+.++|+.|+++|+++||||||| || ++|+++|++++||||+++|++|+++
T Consensus 268 t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~Gi~svLVEGG~~~~~G---~~L~~sfl~~~LvDei~~yiAP~il 344 (380)
T PLN02807 268 ADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQRGLCSVLLDLRGNVGGL---ESLLKDALEDKLLQKVVVEVLPFWS 344 (380)
T ss_pred ECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHCCCCEEEEecCCCCCCH---HHHHHHHHHCCCccEEEEEEcCcee
Confidence 86654444567788999887667899999999999999999999741 25 5669999999999999999999999
Q ss_pred CCCCCCCCccccccccccCeeeeeeEEecCcEEEEEeC
Q 014311 390 GSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427 (427)
Q Consensus 390 G~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y~ 427 (427)
|+.+.+.+ +..+.+..+|++++++++|+|+++.+|+
T Consensus 345 G~~~~~~~--~~~~~~~~~l~~~~~~~~g~Dv~l~~~~ 380 (380)
T PLN02807 345 GSQGQSIA--SFGGSQSFKLKRLTSREVGGSVVLEGYF 380 (380)
T ss_pred cCCCCccc--ccChhhCcccEeeeEEEECCeEEEEEEC
Confidence 97554432 3456788999999999999999998886
No 2
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=2.2e-76 Score=598.42 Aligned_cols=338 Identities=36% Similarity=0.505 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCCCh
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGRTP 156 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~t~ 156 (427)
|++||++|+++|+++.+.++||++||||||+||+||++|+|...+.+|||++||++|+..++|||||||+|||+|+|||+
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~ai~~a~~~~~g~tlyvTlEPC~~~g~t~ 82 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTP 82 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCCCCCHHHHHHHHHhhhcCCCEEEEecCCccCCCCCh
Confidence 78999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccCceee
Q 014311 157 PCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVL 236 (427)
Q Consensus 157 ~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLDG~Ia 236 (427)
||+.+|+++||+||||+..||++.+.+.+...|+++||+|+.|++++||.++++.||++.+++||||++|+|+||||+||
T Consensus 83 mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~V~~k~A~SlDGkia 162 (367)
T PRK10786 83 PCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTA 162 (367)
T ss_pred HHHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcEEEcCCcHHHHHHHHHHHHHHhhcccceEEEEEeecCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCC-------------CCCCeEEEEccCCCCCCCC
Q 014311 237 DQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPD-------------ANQPFRIITVSNHASPIRI 298 (427)
Q Consensus 237 ~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~-------------~~~P~~vVvd~~~~l~~~~ 298 (427)
..+|.+.|++++ ++|++|+.+||||+| +|+..|||.|++|.+. .++|++||+|++++++++.
T Consensus 163 ~~~g~s~~is~~~~~~~~h~lRa~~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~~~~~~~~P~rvV~d~~g~l~~~~ 242 (367)
T PRK10786 163 MASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPEH 242 (367)
T ss_pred CCCCcccccCCHHHHHHHHHHHhHCCEEEECcChHhhcCCCccccccccccccccccccccCCCCcEEEEcCCCCCCchh
Confidence 999999999875 689999999999999 8999999999999531 2589999999999999999
Q ss_pred CccccCCCceEEEEecCCCCCccccccCCcEEEEe----CCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHC
Q 014311 299 PGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNL----HQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQ 374 (427)
Q Consensus 299 ~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~----~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~ 374 (427)
++|++. .++||++.+.... ....+++.+.. +++|+.+++++|+++|+++||||| | ++|+++|+++
T Consensus 243 ~~f~~~--~~~~i~~~~~~~~---~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~Gi~~l~veG---G---~~l~~~~l~~ 311 (367)
T PRK10786 243 RIVQQP--GETWLARTQEDSR---EWPETVRTLLLPEHNGHLDLVVLMMQLGKQQINSIWVEA---G---PTLAGALLQA 311 (367)
T ss_pred hhhcCC--CCEEEEEcCchhh---hhhcCceEEEEeCCCCCcCHHHHHHHHHhCCCCEEEEee---C---HHHHHHHHHC
Confidence 998653 4788887653211 11235553332 268999999999999999999994 5 4569999999
Q ss_pred CCccEEEEEEEeeEeCCCCCCCC--ccccccccccCeeeeeeEEecCcEEEEE
Q 014311 375 NLLQKIVVEVLPVWNGSDGGNPH--TLLNSLGKRLILKNLQPKMSSQSIVLEG 425 (427)
Q Consensus 375 gLvDEl~l~i~P~llG~~g~~l~--~~~~~~~~~~~L~l~~~~~~g~di~~~~ 425 (427)
|||||++++++|+++|+++.+.+ .++..+.+..+|++++++.+|+|+++.+
T Consensus 312 ~lvDe~~~~~aP~~~G~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~D~~~~~ 364 (367)
T PRK10786 312 GLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFSEIRHVGPDVCLHL 364 (367)
T ss_pred CCccEEEEEEcceeccCCCcccccccCccChhhCcccEEeeEEEECCeEEEEE
Confidence 99999999999999997555542 3455667889999999999999998654
No 3
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=100.00 E-value=1.1e-73 Score=575.86 Aligned_cols=334 Identities=37% Similarity=0.601 Sum_probs=301.4
Q ss_pred HHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCCChhhHH
Q 014311 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGRTPPCTE 160 (427)
Q Consensus 81 m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~t~~C~~ 160 (427)
|++|+++|+++.+.++||+|||||||+||+||++|+|...+++|||++||++|+++++|||||||+|||+|+|||+||+.
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~~~~~HAE~~ai~~a~~~~~g~tlyvtlEPC~~~g~~~~C~~ 80 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKAGEPHAEVHALRQAGENAKGATAYVTLEPCSHQGRTPPCAE 80 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCCCCCCCHHHHHHHHhccccCCcEEEEeCCCCCCCCCCcHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccCceeecCCC
Q 014311 161 ALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLG 240 (427)
Q Consensus 161 ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLDG~Ia~~~g 240 (427)
+|+++||+|||||..||++.+.+.++..|+++||+|+.|++++||.++++.||++.+++||||++++|+||||||+..+|
T Consensus 81 ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~v~~~~a~SLDG~Ia~~~g 160 (344)
T TIGR00326 81 AIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGILKEEAERLNKGFLKRMRTGLPYVQLKLAASLDGKIATASG 160 (344)
T ss_pred HHHHcCCCEEEEEeCCCCccccchHHHHHhcCCcEEEeCCCHHHHHHHHHHHHHhhhcCCCEEEEEEeeCCCCCccccCC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCCC-CCCeEEEEccCCCCCCCCCccccCCCceEEEEec
Q 014311 241 EGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPDA-NQPFRIITVSNHASPIRIPGLSEESSSKVIVFTD 314 (427)
Q Consensus 241 ~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~-~~P~~vVvd~~~~l~~~~~l~~~~~~~~~~v~t~ 314 (427)
.+.|++++ +++++|+++|+||+| +|+..|+|.+++|++.. .+|.++|+|++++++++.++|+. ..++||+++
T Consensus 161 ~~~wi~~~~~~~~~~~lra~~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV~d~~~~~~~~~~~~~~--~~~~~V~s~ 238 (344)
T TIGR00326 161 ESKWITSEAARTDAQQLRAQSDAILVGGGTVKADNPALTARLDEATEQPLRVVLDTQLRIPEFAKLIPQ--IAPTWIFTT 238 (344)
T ss_pred CccccCCHHHHHHHHHHHHHCCEEEEChhhHhHhCCcccccCCCCCCCCeEEEEcCCCCCCCcchhhcC--CCCEEEEEC
Confidence 99999754 578899999999999 79999999999998753 57999999999999988888863 467888887
Q ss_pred CCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCC
Q 014311 315 GEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGG 394 (427)
Q Consensus 315 ~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~ 394 (427)
.. .+...++..+++++...++|+.+++++|+++|+++||||| | ++|+++|+++|||||++|+++|+++|+.+.
T Consensus 239 ~~-~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~g~~~ilveG---G---~~L~~~ll~~gLVDEl~l~i~P~ilG~~~~ 311 (344)
T TIGR00326 239 AR-DKKKRLEAFEVNIFPLEKVTIREVMTQLGKRGINSVLVEG---G---PNLLGSFLDEGLVDELIIYIAPKLLGGTHA 311 (344)
T ss_pred Ch-hhhhHHhhCCeEEecCCCCCHHHHHHHHHhCCCCEEEEee---H---HHHHHHHHHCCCCeEEEEEEccEEecCCCC
Confidence 53 2334556678887766688999999999999999999994 5 455999999999999999999999997443
Q ss_pred C-CC--ccccccccccCeeeeeeEEecCcEEE
Q 014311 395 N-PH--TLLNSLGKRLILKNLQPKMSSQSIVL 423 (427)
Q Consensus 395 ~-l~--~~~~~~~~~~~L~l~~~~~~g~di~~ 423 (427)
+ ++ .++..+.+..+|++++++++++|+++
T Consensus 312 ~~~~~~~~~~~~~~~~~l~l~~~~~~g~d~~~ 343 (344)
T TIGR00326 312 PGLCSEPGFQKMADALNFKFLEINQIGPDILL 343 (344)
T ss_pred ccccccccccChhhcccceeeeEEEECCEEEe
Confidence 3 32 34555677889999999999999874
No 4
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=3.2e-51 Score=411.76 Aligned_cols=279 Identities=17% Similarity=0.226 Sum_probs=240.2
Q ss_pred HHHHHHHhhhcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchh-----HHHHhhCCcEEEEecc
Q 014311 127 VFALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKG-----LERLRDAGIDVTVGVE 201 (427)
Q Consensus 127 ~~ai~~~~~~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~-----~~~l~~~gi~V~~g~~ 201 (427)
..|+++.| .+|.++|+|+|||+ -|+.+|+.+||+|||+++ |||+ .|+| ++.|+++||+| .|++
T Consensus 35 ~~~l~~lg--i~g~~i~~s~~p~~------~cad~ii~~gi~rVVi~~-D~d~--~G~~~~~~~~~~L~~aGi~V-~~~l 102 (360)
T PRK14719 35 ILSLKNLK--INANFITVSNTPVF------QIADDLIAENISEVILLT-DFDR--AGRVYAKNIMEEFQSRGIKV-NNLI 102 (360)
T ss_pred HHHHHHcC--CCCcEEEEeCCchH------HHHHHHHHcCCCEEEEEE-CCCC--CCCccchHHHHHHHHCCCEE-Eeeh
Confidence 34777775 46999999999994 599999999999999999 9998 4555 99999999999 6799
Q ss_pred cchhhccccceeee-------ee-----------cCcceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCE
Q 014311 202 DELCKRLNEAFIHR-------IV-----------TGKPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDA 259 (427)
Q Consensus 202 ~~e~~~l~~~f~~r-------~~-----------~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~Da 259 (427)
++||+++++.|+++ .+ ++||||++|+|+||||+||..+|.+. ++++ ++|++|+++||
T Consensus 103 ~~e~~~l~~~~~~~ie~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLDGkIA~~~G~s~-IT~~~ar~~vh~lRa~~DA 181 (360)
T PRK14719 103 RKEIIKYSRGDLKDIESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIRKDVDA 181 (360)
T ss_pred HHHHHHHhHHhhhcchhhhhhheeccccccccccCCCCeEEEEEEEcCcCcccCCCCCCC-cCCHHHHHHHHHHHHHCCE
Confidence 99999999987776 66 68999999999999999999999988 8765 79999999999
Q ss_pred EEEc-cccccccCCCCCCCC---CCCCCeEEEEccCCCCCCCCCccccCCCceEEEEecCCC-----CCccccccCCcEE
Q 014311 260 IILS-ASSTKKYSIPASQEP---DANQPFRIITVSNHASPIRIPGLSEESSSKVIVFTDGEI-----TVEPDMGTKGIET 330 (427)
Q Consensus 260 iLvG-~T~~~d~p~l~~r~~---~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~-----~~~~~l~~~~v~~ 330 (427)
||+| +|+..|||.||+|.. .+++|.+||+|+++++|++.++|+. ..|+||+++... ++...++..|+++
T Consensus 182 ILVG~~Tv~~DnP~LtvR~~~~~~~~~P~RVVlD~~l~lp~~~~lf~~--~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v 259 (360)
T PRK14719 182 IMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLNARVLNK--DAKTVIATTTPISDEKEEKIRKLKEMGITV 259 (360)
T ss_pred EEECcchHhhcCCCCccccccccCCCCCEEEEEeCCCCCCcchhhhcC--CCCEEEEEcccccccchHHHHHHHhcCcEE
Confidence 9999 899999999999954 3589999999999999999999974 348999986542 2334567788998
Q ss_pred EEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCC-CCCC--cccccccc
Q 014311 331 VNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDG-GNPH--TLLNSLGK 405 (427)
Q Consensus 331 i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g-~~l~--~~~~~~~~ 405 (427)
+..+ .+|+.++++.|+++|+++||||| | ++|+++|+++|||||+++|++|+++|+++ ++++ .++..+.+
T Consensus 260 ~~~~~~~~dl~~~l~~L~~~gi~svlVEG---G---~~l~~sfl~~~LvDel~l~iaP~ilGg~~~~~~~~~~g~~~~~~ 333 (360)
T PRK14719 260 LQAGVQKVDLRKIMNEIYKMGINKILLEG---G---GTLNWGMFKENLINEVRVYIAPKVFGGANSPTYVDGEGFKNVEE 333 (360)
T ss_pred EEcCCCCCCHHHHHHHHHhCCCCEEEEEe---C---HHHHHHHHHCCCceEEEEEEccEEECCCCCcccccccCcccccc
Confidence 7653 68999999999999999999995 5 46699999999999999999999999753 3332 34566778
Q ss_pred ccCeeeeeeEEecCcEEEEEe
Q 014311 406 RLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 406 ~~~L~l~~~~~~g~di~~~~Y 426 (427)
+.+|++.+++.+++|+++.+|
T Consensus 334 a~~L~l~~~~~lg~di~l~y~ 354 (360)
T PRK14719 334 CTKLELKNYYPLDDGIVLEYR 354 (360)
T ss_pred ccccEEeEEEEECCeEEEEEE
Confidence 899999999999999986655
No 5
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-47 Score=328.71 Aligned_cols=143 Identities=66% Similarity=1.093 Sum_probs=139.8
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCC
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYG 153 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g 153 (427)
+..|++||++|+++|++..+.+.|||+||||||+||+||++|+|...|.+|||+.||++|++..+|+|+|||||||||||
T Consensus 3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag~~a~Gat~yVTLEPCsH~G 82 (146)
T COG0117 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAGEAARGATAYVTLEPCSHYG 82 (146)
T ss_pred chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCCCCcHHHHHHHHcCcccCCCEEEEEecCcccCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeee
Q 014311 154 RTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRI 216 (427)
Q Consensus 154 ~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~ 216 (427)
|||+|+.+|+.+||+|||++..|||+.++|+|+.+|+++||+|..|++++|+.++++.|++|.
T Consensus 83 rTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 83 RTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred CCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCeEEEehhHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 6
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-39 Score=306.43 Aligned_cols=204 Identities=22% Similarity=0.287 Sum_probs=184.0
Q ss_pred cCcceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCCC---CCCeEEEEc
Q 014311 218 TGKPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPDA---NQPFRIITV 289 (427)
Q Consensus 218 ~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~---~~P~~vVvd 289 (427)
+++|||++|+|+||||+|+..+|+++|++++ ++|++|+++||||+| +|+.+|||.+++|++.. ++|++||+|
T Consensus 1 ~~rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD 80 (218)
T COG1985 1 RGRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILD 80 (218)
T ss_pred CCCCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHHcCEEEECccEEEeeCCccccccCCCCccCCCEEEEEC
Confidence 4799999999999999999999999999875 689999999999999 89999999999999876 899999999
Q ss_pred cCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHH
Q 014311 290 SNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEML 367 (427)
Q Consensus 290 ~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l 367 (427)
+++++|++.++|+.....|+|+++++..+++..+++.|++++.++ ++|+..+++.|+++|+++||||| | ++|
T Consensus 81 ~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~i~~vlvEG---G---~~L 154 (218)
T COG1985 81 SRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAERGINSVLVEG---G---ATL 154 (218)
T ss_pred CCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhCCCcEEEEcc---C---HHH
Confidence 999999999999865336999999988667788899999999997 79999999999999999999994 5 456
Q ss_pred HHHHHHCCCccEEEEEEEeeEeCCCCCCCC--ccccccccccCeeeeeeEEecCcEEEEEeC
Q 014311 368 LKEGIEQNLLQKIVVEVLPVWNGSDGGNPH--TLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427 (427)
Q Consensus 368 ~~sfl~~gLvDEl~l~i~P~llG~~g~~l~--~~~~~~~~~~~L~l~~~~~~g~di~~~~Y~ 427 (427)
+++|+++|||||+++|++|+++|+.+++++ .++....++.+|++.+++.+|+|+.+.+++
T Consensus 155 ~~s~l~~glVDel~l~iaP~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~d~~l~~~~ 216 (218)
T COG1985 155 NGSFLEAGLVDELLLYIAPKILGGSARTLVGGLGFLSLADAPKLELLRVEQVGDDVLLEYRV 216 (218)
T ss_pred HHHHHHcCCCcEEEEEEechhhcCCCCccccCccccchhhcccceEeeEEEECCeEEEEEEE
Confidence 999999999999999999999997666664 456667788899999999999999988763
No 7
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=100.00 E-value=1.3e-35 Score=280.86 Aligned_cols=197 Identities=18% Similarity=0.239 Sum_probs=168.5
Q ss_pred cceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCC-CCCCCC--CCeEEEEccC
Q 014311 220 KPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPAS-QEPDAN--QPFRIITVSN 291 (427)
Q Consensus 220 rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~-r~~~~~--~P~~vVvd~~ 291 (427)
||||++|+|+|||||||..+|.+ |++++ ++|++|+.+||||+| +|+..|||.+++ |.+.+. +|.+||+|++
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~vVld~~ 80 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAEVDAVMVGIGTVLADDPSLTVHRYAAGKPENPIRVVVDSS 80 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHHCCEEEEccceEEccCCcceeeeccCCCCCCCEEEEECCC
Confidence 89999999999999999999999 99875 588999999999999 899999999999 876444 9999999999
Q ss_pred CCCCCCCCccccCCCceEEEEecCCCC--CccccccCCcEEEEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHH
Q 014311 292 HASPIRIPGLSEESSSKVIVFTDGEIT--VEPDMGTKGIETVNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEML 367 (427)
Q Consensus 292 ~~l~~~~~l~~~~~~~~~~v~t~~~~~--~~~~l~~~~v~~i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l 367 (427)
++++.+.++|. ...++||+++.+.+ ++..+...|++++..+ .+|+.++++.|+++|+++||||| | ++|
T Consensus 81 ~~l~~~~~~~~--~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~vlveG---G---~~l 152 (217)
T PRK05625 81 ARTPPDARILD--GPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYERGIKRLMVEG---G---GTL 152 (217)
T ss_pred CCCCCcccccC--CCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEec---C---HHH
Confidence 99999888885 34688999876532 5566778899988654 68999999999999999999994 5 456
Q ss_pred HHHHHHCCCccEEEEEEEeeEeCC-CCCCCCcc--ccccccccCeeeeeeEEecCcEEEEEe
Q 014311 368 LKEGIEQNLLQKIVVEVLPVWNGS-DGGNPHTL--LNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 368 ~~sfl~~gLvDEl~l~i~P~llG~-~g~~l~~~--~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
+++|+++|||||++++++|+++|+ ++.+++.+ +.....+.+|++++++.++++++ ++|
T Consensus 153 ~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-l~y 213 (217)
T PRK05625 153 IWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVCRCDEGVV-LTY 213 (217)
T ss_pred HHHHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEEEECCEEE-EEE
Confidence 999999999999999999999996 57777543 33345678999999999999986 444
No 8
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=100.00 E-value=2.5e-35 Score=277.57 Aligned_cols=194 Identities=21% Similarity=0.269 Sum_probs=165.2
Q ss_pred ceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCC-CCCCeEEEEccCCCC
Q 014311 221 PFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPD-ANQPFRIITVSNHAS 294 (427)
Q Consensus 221 P~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~-~~~P~~vVvd~~~~l 294 (427)
|||++|+|+||||+||..+|.+ |++++ ++|++|+++||||+| +|+.+|||.|++|.+. +++|.+||+|+++++
T Consensus 1 P~V~lk~A~SlDGkia~~~g~~-~it~~~~r~~~h~lRa~~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld~~~~~ 79 (210)
T TIGR01508 1 PYVIVNVAMSLDGKLATINRDS-RISCEEDLIRVHEIRAEVDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVDSKLRV 79 (210)
T ss_pred CEEEEEEeecCcccccCCCCCc-CcCCHHHHHHHHHHHHHCCEEEECcCeEEecCCcccccCcccCCCCEEEEECCCCCC
Confidence 9999999999999999999994 68765 799999999999999 8999999999999753 579999999999999
Q ss_pred CCCCCccccCCCceEEEEecCCC--CCccccccCCcEEEEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHH
Q 014311 295 PIRIPGLSEESSSKVIVFTDGEI--TVEPDMGTKGIETVNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKE 370 (427)
Q Consensus 295 ~~~~~l~~~~~~~~~~v~t~~~~--~~~~~l~~~~v~~i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~s 370 (427)
+.+.++|+. ..++||++++++ ++...+++.|++++.++ .+|+.+++++|+++|+++||||| | ++|+++
T Consensus 80 ~~~~~~~~~--~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveG---G---~~l~~~ 151 (210)
T TIGR01508 80 PLNARILNK--DAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDKGVRRLMVEG---G---GTLIWS 151 (210)
T ss_pred CCcchhhcC--CCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEee---C---HHHHHH
Confidence 999999974 348899886653 34566778899988764 58999999999999999999994 5 466999
Q ss_pred HHHCCCccEEEEEEEeeEeCC-CCCCCCcc--ccccccccCeeeeeeEEecCcEEEE
Q 014311 371 GIEQNLLQKIVVEVLPVWNGS-DGGNPHTL--LNSLGKRLILKNLQPKMSSQSIVLE 424 (427)
Q Consensus 371 fl~~gLvDEl~l~i~P~llG~-~g~~l~~~--~~~~~~~~~L~l~~~~~~g~di~~~ 424 (427)
|+++|||||++++++|+++|+ ++++++.+ +... ++.+|++.+++.+++|+++.
T Consensus 152 fl~~~LvDel~l~i~P~ilG~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~ 207 (210)
T TIGR01508 152 LFKENLVDEISVYIAPKIFGGRDAPTYVDGEGFKTE-DCPKLELKNFYRLGEGIVLE 207 (210)
T ss_pred HHHCCCCcEEEEEEcCEEEcCCCCcCccCCCCcCcc-cCccceEeeEEEECCcEEEE
Confidence 999999999999999999996 34554322 2223 46899999999999998764
No 9
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=100.00 E-value=2.9e-35 Score=277.92 Aligned_cols=201 Identities=20% Similarity=0.285 Sum_probs=170.8
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCC---CCCCeEEEEcc
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPD---ANQPFRIITVS 290 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~---~~~P~~vVvd~ 290 (427)
+||||++++|+||||+||..+|.+.|++++ ++|++|+++||||+| +|+..|+|.+++|++. +++|.+||+|+
T Consensus 1 ~rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~~DailvG~~T~~~d~p~l~~r~~~~~~~~~P~~vv~~~ 80 (216)
T TIGR00227 1 GRPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLTVRWVELDELRNPVRVVLDS 80 (216)
T ss_pred CCCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhHcCEEEECcCeEeccCCcceeeccCcccCCCCeEEEECC
Confidence 589999999999999999999999999754 578899999999999 8999999999999874 47999999999
Q ss_pred CCCCCCCCCccccCCCceEEEEecCCCC--CccccccCCcEEEEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccHHH
Q 014311 291 NHASPIRIPGLSEESSSKVIVFTDGEIT--VEPDMGTKGIETVNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEM 366 (427)
Q Consensus 291 ~~~l~~~~~l~~~~~~~~~~v~t~~~~~--~~~~l~~~~v~~i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~ 366 (427)
+++++...++|+.. .++||+++.... +...+...|++++.++ ++|+.+++++|+++|+++||||| | ++
T Consensus 81 ~~~~~~~~~~~~~~--~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~g~~~llveG---G---~~ 152 (216)
T TIGR00227 81 QLRVPPTARLLNDD--APTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEEGINSVMVEG---G---GT 152 (216)
T ss_pred CCCCCcccccccCC--CCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHcCCCEEEEee---C---HH
Confidence 99999888888653 578888876532 3344666788887664 46999999999999999999994 5 46
Q ss_pred HHHHHHHCCCccEEEEEEEeeEeCC-CCCCCC--ccccccccccCeeeeeeEEecCcEEEEEeC
Q 014311 367 LLKEGIEQNLLQKIVVEVLPVWNGS-DGGNPH--TLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427 (427)
Q Consensus 367 l~~sfl~~gLvDEl~l~i~P~llG~-~g~~l~--~~~~~~~~~~~L~l~~~~~~g~di~~~~Y~ 427 (427)
|+++|+++|||||++++++|+++|+ ++.+++ .++.......+|++++++.+++|+++.+|+
T Consensus 153 L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~~g~~v~~~~~~ 216 (216)
T TIGR00227 153 LNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVDGEGFQKMADAPNLELKEIYQIGEDIVLTAKL 216 (216)
T ss_pred HHHHHHHCCCCCEEEEEECchhhCCCCCcCccCCCCccCHhhcccceeeeEEEECCeEEEEEeC
Confidence 6999999999999999999999996 466553 224445667899999999999999998875
No 10
>PRK14059 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=282.12 Aligned_cols=201 Identities=12% Similarity=0.113 Sum_probs=167.6
Q ss_pred eecCcceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCC---------C--
Q 014311 216 IVTGKPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEP---------D-- 279 (427)
Q Consensus 216 ~~~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~---------~-- 279 (427)
.+++||||++|+|+||||+|+ .+|.+.|++++ ++|++|+++||||+| +|+..|||.+ +|.. .
T Consensus 26 ~~~~rP~V~lk~A~SlDGkia-~~g~s~~It~~~~r~~~h~lRa~~DAIlVG~~Tv~~DnP~L-~r~~~~~~~~R~~~g~ 103 (251)
T PRK14059 26 DGLDRPWLRANFVTSLDGAAT-VDGRSGGLGGPADRRVFGLLRALADVVVVGAGTVRAENYGG-VRLSAAARQQRQARGQ 103 (251)
T ss_pred ccCCCCeEEEEEEEcCccccc-CCCCCcCcCCHHHHHHHHHHHHHCCEEEEchhhhhhcCccc-cccCHHHHHHHHhcCC
Confidence 467999999999999999998 99999999865 689999999999999 8999999999 4432 1
Q ss_pred CCCCeEEEEccCCCCCCCCCccccCCCceEEEEecCCCC--Cccccc--cCCcEEEEeC--CCCHHHHHHHHHHCCCCeE
Q 014311 280 ANQPFRIITVSNHASPIRIPGLSEESSSKVIVFTDGEIT--VEPDMG--TKGIETVNLH--QLNLKAVLDYCYSHGFCSV 353 (427)
Q Consensus 280 ~~~P~~vVvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~~--~~~~l~--~~~v~~i~~~--~~dl~~~l~~L~~~g~~~I 353 (427)
.++|.+||+|+++++|++.++|+. ...++||+++.+.. +...+. ..+++++..+ .+|+.+++++|+++|+++|
T Consensus 104 ~~~P~~vVld~~~~lp~~~~lf~~-~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~v 182 (251)
T PRK14059 104 AEVPPIAVVSRSGDLDPDSRLFTE-TEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAARGLRRI 182 (251)
T ss_pred CCCCcEEEecCCcCCCccchhhcc-CCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhCCCCEE
Confidence 368999999999999999999963 35588888876542 333333 3478887654 6899999999999999999
Q ss_pred EEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEeC
Q 014311 354 LVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427 (427)
Q Consensus 354 lveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y~ 427 (427)
|||| | ++|+++|+++|||||++++++|+++|+++.+++.+. ...+..|++.+.+.+++++++++|.
T Consensus 183 lveG---G---~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~--~~~~~~l~L~~~~~~~~g~v~l~Y~ 248 (251)
T PRK14059 183 LCEG---G---PTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGP--GQAPTRMRLAHVLTDDDGYLFLRYV 248 (251)
T ss_pred EEec---h---HHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCC--CCCCcCeEEEEEEEcCCCEEEEEEE
Confidence 9994 5 456999999999999999999999997657764321 1456899999999999999999993
No 11
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=5.1e-33 Score=252.87 Aligned_cols=137 Identities=30% Similarity=0.567 Sum_probs=123.0
Q ss_pred CChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCC----CCcHHHHHHHHHhhh-----cCCCEEE
Q 014311 73 NDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG----QPHAEVFALRDAGEL-----AEGATAY 143 (427)
Q Consensus 73 ~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~----~~HAE~~ai~~~~~~-----~~~~tlY 143 (427)
...+|++||++|+++|+++...+ ++|||||||++|+||++|+|...+ +.||||+||++|++. +.|+|||
T Consensus 9 ~~~~~~~~m~~A~~~A~~a~~~g--~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY 86 (172)
T PRK10860 9 VEFSHEYWMRHALTLAKRAWDER--EVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLY 86 (172)
T ss_pred ccccHHHHHHHHHHHHHHhhccC--CCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEE
Confidence 34458899999999999988764 589999999999999999998643 589999999999764 5799999
Q ss_pred EcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCC----cEEEEecccchhhccccceeeeee
Q 014311 144 VSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAG----IDVTVGVEDELCKRLNEAFIHRIV 217 (427)
Q Consensus 144 ~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~g----i~V~~g~~~~e~~~l~~~f~~r~~ 217 (427)
||+||| +||++||+|+||+|||||..||+.+..+.+++.++..+ ++|+.|++++||.++++.||.+.+
T Consensus 87 ~TlEPC------~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~ 158 (172)
T PRK10860 87 VTLEPC------VMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRR 158 (172)
T ss_pred eeCCCc------HHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHh
Confidence 999999 99999999999999999999999988888899998776 899999999999999999998744
No 12
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.98 E-value=6.7e-32 Score=230.21 Aligned_cols=113 Identities=69% Similarity=1.139 Sum_probs=106.7
Q ss_pred HHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCCCCCcHHHHHHHHHhh-hcCCCEEEEcCCCCCCCCCChhh
Q 014311 81 MRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKAGQPHAEVFALRDAGE-LAEGATAYVSLEPCNHYGRTPPC 158 (427)
Q Consensus 81 m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~~~~HAE~~ai~~~~~-~~~~~tlY~t~ePC~~~g~t~~C 158 (427)
|++|+++|+++.....+++|||||||+ ||+||++|+|...++.|||++||+++++ .++|+|||+|+|||+++|+|+||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~~l~g~tly~TlEPC~~~~~~~mC 80 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLARGATLYVTLEPCSHHGKTPPC 80 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCchHH
Confidence 789999999986666678999999998 5999999999999999999999999988 78999999999999999999999
Q ss_pred HHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCC
Q 014311 159 TEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAG 193 (427)
Q Consensus 159 ~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~g 193 (427)
+.+|+|+||+||||+..||++.+.++|++.|+++|
T Consensus 81 ~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 81 VDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred HHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 99999999999999999999988899999999876
No 13
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.97 E-value=1.1e-30 Score=243.69 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=151.1
Q ss_pred ceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCCC---------CCCeEE
Q 014311 221 PFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPDA---------NQPFRI 286 (427)
Q Consensus 221 P~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~---------~~P~~v 286 (427)
|||+++|++||||||+.+++...|+++. .++++|+++|++|+| +|+..++|.++.+.+.. ++|.++
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSEADAILVGRNTVRADNPSLTVRWPGDPPPRERGRAKQPPKV 80 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHHCSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCHSSSEEE
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhhCCEEEeccchhhhcCccccccCccccchhhhhhccCCeEE
Confidence 8999999999999999999999998764 578899999999999 78999999888776654 799999
Q ss_pred EEccCCCCCCCCCccccCCCceEEEEecCCCC--CccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccH
Q 014311 287 ITVSNHASPIRIPGLSEESSSKVIVFTDGEIT--VEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDL 364 (427)
Q Consensus 287 Vvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~~--~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L 364 (427)
|+|++++++++.++++.. .+++|+++++.. +...++ + .+|+.+++++|+++|+++|+||| |
T Consensus 81 V~s~~~~~~~~~~~~~~~--~~~~v~~s~~~~~~~~~~l~------v---~~dl~~~l~~L~~~g~~~i~v~G---G--- 143 (200)
T PF01872_consen 81 VVSRSLKLPPDARLFNDD--KPVLVITSEKAPDEYLERLR------V---RVDLEEALRRLKERGGKDILVEG---G--- 143 (200)
T ss_dssp EEESTCCTTTTCCCCSSS--SSEEEEEESTSSHHHHHHHH------E---SEHHHHHHHHHHHTTTSEEEEEE---H---
T ss_pred EEecccccccccccccCC--CceEEEeecccccccccceE------E---ecCHHHHHHHHHhcCCCEEEEec---h---
Confidence 999999999988888654 677777776543 344444 1 88999999999999999999995 4
Q ss_pred HHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccc-cCeeeeeeEEecCcEEE
Q 014311 365 EMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKR-LILKNLQPKMSSQSIVL 423 (427)
Q Consensus 365 ~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~-~~L~l~~~~~~g~di~~ 423 (427)
++|+++|+++|||||++|+|+|+++|+++++++.+ .... .+|++++++++++|+++
T Consensus 144 ~~l~~~~l~~gLvDEl~l~i~Pv~lG~~~~~lf~~---~~~~~~~l~l~~~~~~~~~vv~ 200 (200)
T PF01872_consen 144 GSLNGSFLRAGLVDELSLTIAPVLLGGGGPPLFDG---GSPRSLRLELVSVRTFGNGVVL 200 (200)
T ss_dssp HHHHHHHHHTT--SEEEEEEESEE-SSTSEESSTS---STSSSEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEEeeEEeCCCCCCCCCC---CCCcccceEEEEEEEeCCcEEC
Confidence 46699999999999999999999999746667433 3233 79999999999999975
No 14
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.1e-30 Score=228.18 Aligned_cols=133 Identities=36% Similarity=0.590 Sum_probs=120.0
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhh-----cCCCEEE
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGEL-----AEGATAY 143 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~-----~~~~tlY 143 (427)
..+|+.||++|+++|+++...+ +.|||||||+ +|+||+.|+|.. .++.|||+.||++|++. ++|||||
T Consensus 5 ~~~~~~~m~~al~~A~~a~~~g--e~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tly 82 (152)
T COG0590 5 SEKDEDFMREALKEAKKAGDEG--EVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLY 82 (152)
T ss_pred hhhhHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEE
Confidence 4579999999999999988444 5899999999 999999999976 46789999999999764 6899999
Q ss_pred EcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhh----CCcEEEEecccchhhccccceee
Q 014311 144 VSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRD----AGIDVTVGVEDELCKRLNEAFIH 214 (427)
Q Consensus 144 ~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~V~~g~~~~e~~~l~~~f~~ 214 (427)
||+||| +||++||+|+||+|||||.+||+.+..+.....+.+ +.++|..|++++||..+++.||.
T Consensus 83 vT~EPC------~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 83 VTLEPC------PMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred EecCCH------HHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 999999 999999999999999999999999988888888887 45899999999999999998875
No 15
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.96 E-value=1.7e-28 Score=218.67 Aligned_cols=114 Identities=31% Similarity=0.479 Sum_probs=100.8
Q ss_pred CChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCC-------------------CCcHHHHHHHHH
Q 014311 73 NDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG-------------------QPHAEVFALRDA 133 (427)
Q Consensus 73 ~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~-------------------~~HAE~~ai~~~ 133 (427)
+..||++||++|+++|+++ .+|++|||||||+||+||++|+|..+. +.|||++||+++
T Consensus 2 ~~~~d~~fM~~A~~~A~rs---~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a 78 (151)
T TIGR02571 2 RIKWDQYFMAQSHLLALRS---TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQC 78 (151)
T ss_pred CCcHHHHHHHHHHHHHHhc---CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHH
Confidence 4578999999999999986 456799999999999999999999732 379999999988
Q ss_pred hh---hcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEE
Q 014311 134 GE---LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198 (427)
Q Consensus 134 ~~---~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~ 198 (427)
+. .++|+|||||+||| +||+++|+|+||++|||+..+++. ..+.++|+++||+|..
T Consensus 79 ~~~~~~l~g~tlYvT~ePC------~~Ca~ai~~agI~~Vvy~~~~~~~---~~~~~~l~~~gi~v~~ 137 (151)
T TIGR02571 79 AKFGVSTEGAEIYVTHFPC------LQCTKSIIQAGIKKIYYAQDYHNH---PYAIELFEQAGVELKK 137 (151)
T ss_pred HhcCCCcCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEccCCCCc---HHHHHHHHHCCCEEEE
Confidence 53 57899999999999 999999999999999999876553 3589999999999997
No 16
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.96 E-value=1.6e-28 Score=222.75 Aligned_cols=123 Identities=30% Similarity=0.445 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCC----------------------------------
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG---------------------------------- 121 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~---------------------------------- 121 (427)
.|++||++|+.+|+++.+ ++.|||||||++|+||++|||..+.
T Consensus 2 ~d~~fM~~A~~~A~~s~~---~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PHA02588 2 KDSTYLQIAYLVSQESKC---VSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSS 78 (168)
T ss_pred CHHHHHHHHHHHHHhcCC---CCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccC
Confidence 478999999999999854 4589999999999999999998642
Q ss_pred --CCcHHHHHHHHHhh---hcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEE
Q 014311 122 --QPHAEVFALRDAGE---LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196 (427)
Q Consensus 122 --~~HAE~~ai~~~~~---~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V 196 (427)
..|||++||++|++ .+.|+|||||+||| +||+.+|+++||+||||+..++.. .+.|.++|+++||+|
T Consensus 79 ~~~~HAE~nAi~~a~~~~~~~~g~tLYvTlePC------~~Ca~aI~~~gI~rVvy~~~~~~~--~~~~~~~L~~~Gi~v 150 (168)
T PHA02588 79 KNEIHAELNAILFAARNGISIEGATMYVTASPC------PDCAKAIAQSGIKKLVYCEKYDRN--GPGWDDILRKSGIEV 150 (168)
T ss_pred CCCccHHHHHHHHHhhcCCCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEeeccCCC--cHHHHHHHHHCCCEE
Confidence 46999999999864 57899999999999 999999999999999999874332 356899999999999
Q ss_pred EEecccchhhcccc
Q 014311 197 TVGVEDELCKRLNE 210 (427)
Q Consensus 197 ~~g~~~~e~~~l~~ 210 (427)
+. +..+++.++++
T Consensus 151 ~~-~~~~~~~~~~~ 163 (168)
T PHA02588 151 IQ-IPKEELNKLNW 163 (168)
T ss_pred EE-eCHHHHHhhhh
Confidence 97 76777666654
No 17
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.93 E-value=2.3e-25 Score=194.62 Aligned_cols=93 Identities=37% Similarity=0.552 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCC-------------------------CCCcHHHHHHH
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA-------------------------GQPHAEVFALR 131 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~-------------------------~~~HAE~~ai~ 131 (427)
|++||++|+++|+++. ++++|||||||++|+||++|+|..+ +..|||++||+
T Consensus 1 d~~~m~~A~~~A~~s~---~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~ 77 (131)
T cd01286 1 DEYFMAIARLAALRST---CPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAIL 77 (131)
T ss_pred CHHHHHHHHHHHHHcC---CCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHH
Confidence 4689999999999854 4679999999999999999999864 56899999999
Q ss_pred HHhh---hcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCC
Q 014311 132 DAGE---LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPN 178 (427)
Q Consensus 132 ~~~~---~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~ 178 (427)
++++ .++++|||||+||| +||+.+|+++||++|||+..++.
T Consensus 78 ~a~~~~~~~~~~tLyvT~ePC------~~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 78 QAARHGVSLEGATLYVTLFPC------IECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred HHhHcCCCcCCeEEEEecCcH------HHHHHHHHHhCCCEEEEeeccCc
Confidence 9976 67899999999999 99999999999999999998766
No 18
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.91 E-value=4.1e-24 Score=189.76 Aligned_cols=115 Identities=36% Similarity=0.535 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCC--------------------------CCcHHHH
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG--------------------------QPHAEVF 128 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~--------------------------~~HAE~~ 128 (427)
.||++||+.|...|.++ ++|+..||||||+|++||++|||..+. ..|||+|
T Consensus 7 ~wdeyfm~~A~l~a~Rs---tc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~N 83 (164)
T COG2131 7 MWDEYFMAIAELVALRS---TCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQN 83 (164)
T ss_pred HHHHHHHHHHHHHHHHc---cCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHH
Confidence 49999999999999995 557789999999999999999998642 1399999
Q ss_pred HHHHHhhh---cCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEE
Q 014311 129 ALRDAGEL---AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198 (427)
Q Consensus 129 ai~~~~~~---~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~ 198 (427)
||.+|+.. +.|+++|||+.|| .+|+++|+++||++|||+..+++........++|+++||++..
T Consensus 84 Ail~aa~~g~~~~~atlYvt~~PC------~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~~ 150 (164)
T COG2131 84 AILQAARHGVGLEGATLYVTHFPC------SNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQ 150 (164)
T ss_pred HHHHHHhcCCCCCCcEEEEEeccc------HHHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEEe
Confidence 99999765 4679999999999 9999999999999999999998875455688999999999986
No 19
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.91 E-value=5.3e-24 Score=180.34 Aligned_cols=92 Identities=42% Similarity=0.693 Sum_probs=83.3
Q ss_pred HHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh-----cCCCEEEEcCCCCC
Q 014311 81 MRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL-----AEGATAYVSLEPCN 150 (427)
Q Consensus 81 m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~-----~~~~tlY~t~ePC~ 150 (427)
|++|+++|+++... ++.|||||||+ +|+||+.|+|... +..|||++||+++.+. +.+++||+|+|||
T Consensus 1 m~~al~~a~~~~~~--~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC- 77 (109)
T cd01285 1 MRLAIELARKALAE--GEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPC- 77 (109)
T ss_pred CHHHHHHHHHHHHc--CCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCCCh-
Confidence 78999999998654 46899999999 5999999999874 6899999999999775 6899999999999
Q ss_pred CCCCChhhHHHHHhcCccEEEEeecCCCCC
Q 014311 151 HYGRTPPCTEALIKAKVKKVVVGMLDPNPI 180 (427)
Q Consensus 151 ~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~ 180 (427)
+||++||+|+||+||||+..+|+.+
T Consensus 78 -----~mC~~ai~~~gi~~Vvy~~~~~~~g 102 (109)
T cd01285 78 -----PMCAGALLWARIKRVVYGASDPKLG 102 (109)
T ss_pred -----HHHHHHHHHHCCCEEEEEecCCccc
Confidence 9999999999999999999998754
No 20
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.88 E-value=7.1e-23 Score=170.79 Aligned_cols=92 Identities=41% Similarity=0.645 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh----cCCCEEEEc
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL----AEGATAYVS 145 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~----~~~~tlY~t 145 (427)
.+|++||++|+++|+++. ..++++||||||+ +|++|+.|+|... +..|||++||.++.+. +.|++||+|
T Consensus 2 ~~~~~~m~~a~~~a~~s~--~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~lyvt 79 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSR--PCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARNGGSSLKGCTLYVT 79 (102)
T ss_dssp CHHHHHHHHHHHHHHTHB--TTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHTTSSGETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcc--ccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhhccccccCcccccC
Confidence 479999999999999987 4466899999999 9999999999764 4579999999998765 689999999
Q ss_pred CCCCCCCCCChhhHHHHHhcCccEEEEee
Q 014311 146 LEPCNHYGRTPPCTEALIKAKVKKVVVGM 174 (427)
Q Consensus 146 ~ePC~~~g~t~~C~~ai~~~gi~~vv~~~ 174 (427)
+||| +||+++|+++||+||||++
T Consensus 80 ~ePC------~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 80 LEPC------GMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp E--B------HHHHHHHHHHTSSEEEEEE
T ss_pred CCCH------HHHHHHHHHHCcCeEEEeC
Confidence 9999 9999999999999999985
No 21
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.87 E-value=4e-22 Score=165.09 Aligned_cols=87 Identities=32% Similarity=0.508 Sum_probs=78.4
Q ss_pred HHHHHHHHHHccCCCCCCCcEEEEEEeC--CeEEEEEecCCC----CCCcHHHHHHHHHhhh--cCCCEEEEcCCCCCCC
Q 014311 81 MRRCVELATKAVGSTSPNPMVGCVIVKD--GKIVGEGFHPKA----GQPHAEVFALRDAGEL--AEGATAYVSLEPCNHY 152 (427)
Q Consensus 81 m~~a~~~A~~~~~~~~~~~~vGaviv~~--g~ii~~g~n~~~----~~~HAE~~ai~~~~~~--~~~~tlY~t~ePC~~~ 152 (427)
|++|+++|+++. ...++.|||||||++ |++++.|+|... ++.|||++||+++... +++++||+|+|||
T Consensus 1 m~~a~~~a~~a~-~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~~tly~tlePC--- 76 (96)
T cd00786 1 MTEALKAADLGY-AKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGDTKGQMLYVALSPC--- 76 (96)
T ss_pred CHHHHHHHHhcc-CCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCCCCceEEEEECCCh---
Confidence 789999999975 445679999999985 999999999865 6799999999999765 5999999999999
Q ss_pred CCChhhHHHHHhcCccEEEEee
Q 014311 153 GRTPPCTEALIKAKVKKVVVGM 174 (427)
Q Consensus 153 g~t~~C~~ai~~~gi~~vv~~~ 174 (427)
.||+++|+|+||++|||+.
T Consensus 77 ---~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 77 ---GACAQLIIELGIKDVIVVL 95 (96)
T ss_pred ---HHHHHHHHHhCCCCEEEee
Confidence 9999999999999999985
No 22
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.87 E-value=5.7e-22 Score=179.06 Aligned_cols=141 Identities=32% Similarity=0.393 Sum_probs=112.3
Q ss_pred CChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHH---Hhh-----hcCC
Q 014311 73 NDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRD---AGE-----LAEG 139 (427)
Q Consensus 73 ~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~---~~~-----~~~~ 139 (427)
...+|.+||..|+++|.++.+.+. +.|||||+|+ ||+|++.|+|.. +++.|||+.||++ ..+ .+++
T Consensus 7 ~~~~~~~~m~~a~eea~ka~d~~~-~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~ 85 (169)
T KOG1018|consen 7 LSDHDIAFMVEAVEEAKKALDEGD-EVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSE 85 (169)
T ss_pred cccccHHHHHHHHHHHHhhccCCC-CCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceeccC
Confidence 356799999999999999998773 5899999999 999999999974 6789999999998 333 2689
Q ss_pred CEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHH----HhhCC--cEEEEecccchhhcccccee
Q 014311 140 ATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLER----LRDAG--IDVTVGVEDELCKRLNEAFI 213 (427)
Q Consensus 140 ~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~----l~~~g--i~V~~g~~~~e~~~l~~~f~ 213 (427)
+|||||+||| +||++||.|+||++||||...++....+..... |+..+ +.++.|+..+++..+...|.
T Consensus 86 ~tlyvt~ePc------~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~ 159 (169)
T KOG1018|consen 86 TTLYVTCEPC------PMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFY 159 (169)
T ss_pred CEEEEEeccc------HHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhc
Confidence 9999999999 999999999999999999999887644333322 33334 45555776677766777777
Q ss_pred eeeecCc
Q 014311 214 HRIVTGK 220 (427)
Q Consensus 214 ~r~~~~r 220 (427)
.+...+.
T Consensus 160 ~~~n~~~ 166 (169)
T KOG1018|consen 160 VRDNPKD 166 (169)
T ss_pred cccccCC
Confidence 6654443
No 23
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.85 E-value=4.5e-21 Score=175.73 Aligned_cols=158 Identities=23% Similarity=0.307 Sum_probs=119.9
Q ss_pred CCCcccccccCcccccchhhhhhhhhhcccccccCcccccccccCCCChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEE
Q 014311 27 TSSPTLAFNQNSTFGFCNSLKRLAKSLTSTRKCRGGYRIRCGQVQNNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIV 106 (427)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv 106 (427)
+++|..++..++...+-+++.+-.+......+. ...+.||++||++|...|.++ .+||.+|||+||
T Consensus 28 s~~~~~~~~~~~l~~~i~~i~~~lp~~~~~~k~-----------~~~lswd~yFM~iA~LsA~RS---kDpntqVGaCiv 93 (230)
T KOG3127|consen 28 SSNPKNPKLRKFLINNISNILKKLPDLDPFLKR-----------NGYLSWDDYFMAIAFLSAKRS---KDPNTQVGACIV 93 (230)
T ss_pred ccCccchhhhhhhhhhHHHHhhhchhhcccccc-----------ccCccHHHHHHHHHHHHHHhc---cCcccceeeEEE
Confidence 445666666666665555555542222211111 236789999999999999995 467899997777
Q ss_pred e-CCeEEEEEecCCCC------------------------CCcHHHHHHHHHhh-hcCCCEEEEcCCCCCCCCCChhhHH
Q 014311 107 K-DGKIVGEGFHPKAG------------------------QPHAEVFALRDAGE-LAEGATAYVSLEPCNHYGRTPPCTE 160 (427)
Q Consensus 107 ~-~g~ii~~g~n~~~~------------------------~~HAE~~ai~~~~~-~~~~~tlY~t~ePC~~~g~t~~C~~ 160 (427)
. +++||+.|||..+- ..|||++||.+++. ...++++|||+.|| .-|+.
T Consensus 94 ~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~NAi~~~~~~~~~~~~lYvtl~PC------~~Ca~ 167 (230)
T KOG3127|consen 94 DRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEENAILNKGRERVGGCSLYVTLCPC------NECAK 167 (230)
T ss_pred cCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHHHHHHHhCccccCCceEEEeecch------HHHHH
Confidence 7 99999999998642 13999999999865 46789999999999 89999
Q ss_pred HHHhcCccEEEEeecCCCC-CCCchhHHHHhhCCcEEEEecccch
Q 014311 161 ALIKAKVKKVVVGMLDPNP-IVNSKGLERLRDAGIDVTVGVEDEL 204 (427)
Q Consensus 161 ai~~~gi~~vv~~~~d~~~-~~~~~~~~~l~~~gi~V~~g~~~~e 204 (427)
.|+++||++|||+..+--+ ...-.+..+|..+|+++..-++.++
T Consensus 168 liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~i~~~~ 212 (230)
T KOG3127|consen 168 LIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQFIPPES 212 (230)
T ss_pred HHHHhhhhheeeccccccchHHHHHHHHHHHhcCcceEEeccCCc
Confidence 9999999999999987422 2345678889999999888555443
No 24
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.56 E-value=8.3e-14 Score=125.62 Aligned_cols=150 Identities=9% Similarity=0.044 Sum_probs=103.4
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHh--hccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLL--QEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r--~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
+++.+|+|+||+|+..++ ..|....+.+.++ ...|++||| +|.....+ ..+ +.-..+|++++......
T Consensus 1 i~~~~a~sldG~i~~~~~-~~W~~~~d~~~f~~~~~~~~ivmGR~Tye~~~~----~~~--~~~~~~V~S~~~~~~~~-- 71 (158)
T cd00209 1 ISLIVAVDENGVIGKDNK-LPWHLPEDLKHFKKTTTGNPVIMGRKTFESIPR----RPL--PGRTNIVLSRQLDYQDA-- 71 (158)
T ss_pred CEEEEEECCCCceeCCCC-cCcCCHHHHHHHHHHHCCCeEEEChhhHhhCCC----cCC--CCCCEEEEccCCCcCCC--
Confidence 468999999999998877 7896554443322 356899999 56543221 001 11226777776542210
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
..+.++ . |+.+++++|+ .+.++|+|. || ++++.+|+++ +||
T Consensus 72 -------~~~~~~----------------------~-~~~~~v~~lk-~~~~~I~v~---GG---~~l~~~~l~~--iDe 112 (158)
T cd00209 72 -------EGVEVV----------------------H-SLEEALELAE-NTVEEIFVI---GG---AEIYKQALPY--ADR 112 (158)
T ss_pred -------CCeEEE----------------------C-CHHHHHHHHh-cCCCeEEEE---Cc---HHHHHHHHhh--CCE
Confidence 011111 2 7999999999 778899999 45 4669999999 999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeee-eEEecCc---EEEEEe
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQ-PKMSSQS---IVLEGY 426 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~-~~~~g~d---i~~~~Y 426 (427)
+++++.|+++ +|.+++ +... ...|++++ .+.++++ ..+..|
T Consensus 113 ~~l~v~pv~~--~G~~~f---~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~ 157 (158)
T cd00209 113 LYLTRIHAEF--EGDTFF---PEID-ESEWELVSEEEVFEEDGYSYTFETY 157 (158)
T ss_pred EEEEEECCcc--cCCEEC---CCCC-chhcEEEEEEeecccCCccEEEEEE
Confidence 9999999999 477773 3333 68899999 8999884 555555
No 25
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=99.51 E-value=4.9e-13 Score=121.68 Aligned_cols=154 Identities=10% Similarity=0.051 Sum_probs=107.0
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEcc-ccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILSA-SSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG~-T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
|++.+|+|+||.|+. +++..|...++.+.+++ .-..||||+ |...-. ..++.-+.+..+|++++.....
T Consensus 2 i~~i~A~s~dG~Ig~-~~~lpW~~~~~~~~Fk~~t~~~~viMGRkT~esl~----~~~~pl~~r~~iV~sr~~~~~~--- 73 (167)
T COG0262 2 IILIVAVSLDGVIGR-DNSLPWHLPEDLAHFKATTLGKPVIMGRKTYESLP----GEWRPLPGRKNIVLSRNPDLKT--- 73 (167)
T ss_pred EEEEEEEcCCCeeec-CCCCCCCChhHHHHHHHhhCCCCEEEccchhhhcc----ccCCCCCCCeEEEEecCccccc---
Confidence 788999999999987 88999986665555442 223399995 543211 1011234556788888732211
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
+.. +.+.+ ++.+++..+.+...++|||.| | ++|+++|+.+||+||
T Consensus 74 ------e~~-~~v~~----------------------s~~~al~~~~~~~~~~i~IiG---G---~~l~~~~l~~~l~De 118 (167)
T COG0262 74 ------EGG-VEVVD----------------------SIEEALLLLLKEEGEDIFIIG---G---GELYRQFLPAGLADE 118 (167)
T ss_pred ------CCC-EEEeC----------------------CHHHHHHHHhhcCCCeEEEEc---C---HHHHHHHhccccccE
Confidence 111 33333 789999999888799999994 5 566999999999999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeE-EecCcEEEE
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPK-MSSQSIVLE 424 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~-~~g~di~~~ 424 (427)
+++++.|+.+| .|.++ |+. .....|+++..+ ....+....
T Consensus 119 l~lt~ip~~lg-~Gd~~---Fp~-~~~~~~~~~~~~~~~~~~~~~~ 159 (167)
T COG0262 119 LILTIIPVLLG-EGDTL---FPE-GDPADWELVSSEDADEKGGYFY 159 (167)
T ss_pred EEEEEeeeecc-CCCcc---CCC-CCccceEEeeeeecccCCceeE
Confidence 99999999999 78888 444 456788888887 344444333
No 26
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.38 E-value=2.2e-12 Score=109.65 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh---cCCCEEEEc-----CCC
Q 014311 82 RRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL---AEGATAYVS-----LEP 148 (427)
Q Consensus 82 ~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~---~~~~tlY~t-----~eP 148 (427)
..|++.++++. ....+.||||+|+. +|+|+ .|+|... .+.|||+.||.++... ...+++|+| +||
T Consensus 2 ~~a~~~~~~a~-~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~~~~~~~i~vs~~~~~~sP 79 (112)
T cd01283 2 EAALAAAEFAY-APYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSP 79 (112)
T ss_pred HHHHHHHHhCc-CCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCCCceEEEEEEECCCCccCC
Confidence 34666666662 33346899999998 79998 8998654 5789999999998553 468999999 999
Q ss_pred CCCCCCChhhHHHHHhcCccEEEEeecCCCC
Q 014311 149 CNHYGRTPPCTEALIKAKVKKVVVGMLDPNP 179 (427)
Q Consensus 149 C~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~ 179 (427)
| .||+.+|.+.++++++|...+++.
T Consensus 80 C------~~C~~~l~~~~~~~v~~~~~~~~~ 104 (112)
T cd01283 80 C------GACRQVLAEFLPSRLYIIIDNPKG 104 (112)
T ss_pred C------HHHHHHHHHhCCCCeEEEEEcCCC
Confidence 9 999999999999999999987763
No 27
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=98.89 E-value=3.5e-09 Score=103.81 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe--CCeEEEEEecCCC---CCCcHHHHHHHHHhh--------------
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK--DGKIVGEGFHPKA---GQPHAEVFALRDAGE-------------- 135 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~--~g~ii~~g~n~~~---~~~HAE~~ai~~~~~-------------- 135 (427)
.....+|+.++.+|..+... +++|++|++ -..|++.|..... +-.|+-|+++...++
T Consensus 165 ~~~~ri~e~~I~~a~~~~~~----~~~~a~I~~p~~~~Via~~~~~~~~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~ 240 (344)
T KOG2771|consen 165 GEIARIGELLIAMATDGHAS----RPVSAAIVDPVMDRVIAAGTGEVCAYNPIEHCVMVLVHFVARRQEEGTWDLHPIPL 240 (344)
T ss_pred HHHHHHHHHHHHHHhhhccc----cCccceecCCccceEEecCCCcccccCcHHHHHHHHHHHHHHHHhccccccccccc
Confidence 35778999999999986543 789999998 5567776665543 336899999864321
Q ss_pred -----------------------------hcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhH
Q 014311 136 -----------------------------LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGL 186 (427)
Q Consensus 136 -----------------------------~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~ 186 (427)
...|.++|.|+||| .||++|+++++|+||+|+..++..+..+...
T Consensus 241 ~~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC------~MCsMALvHsRikRvfy~~~~s~~G~L~s~~ 314 (344)
T KOG2771|consen 241 LIFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPC------AMCSMALVHSRIKRVFYCKPMSTAGGLGSLY 314 (344)
T ss_pred cccccccchhhhhhchhccccccccccceeeecceEEEecChH------HHHHHHHHHHhhhheeeccCCCCCCCcccee
Confidence 12688999999999 9999999999999999999866544333322
Q ss_pred HHHh----hCCcEEEEecccchhh
Q 014311 187 ERLR----DAGIDVTVGVEDELCK 206 (427)
Q Consensus 187 ~~l~----~~gi~V~~g~~~~e~~ 206 (427)
.+.. ++-++|..+++++++.
T Consensus 315 ~i~~~k~LNhry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 315 RIHQRKSLNHRYEVFRGYLEEDPI 338 (344)
T ss_pred EeeeccccCcceEEEEeecccccc
Confidence 2211 2456777766665544
No 28
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=98.76 E-value=1.5e-07 Score=99.42 Aligned_cols=153 Identities=8% Similarity=-0.008 Sum_probs=97.7
Q ss_pred cceEEEEEeeccCceeecCCCCCccccchHHHHHhh--c-------------cCEEEEc-cccccccCCCCCCCCCCCCC
Q 014311 220 KPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--E-------------YDAIILS-ASSTKKYSIPASQEPDANQP 283 (427)
Q Consensus 220 rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~-------------~DaiLvG-~T~~~d~p~l~~r~~~~~~P 283 (427)
.+-+.+.+|++.+|-|. .+|...|--..+...+++ . .+++||| +|.... |.. .++. +.-
T Consensus 7 ~~~i~lIvA~~~n~~IG-~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESi-p~~--~rPL-p~R 81 (514)
T PTZ00164 7 LKDFSIVVAVTLKRGIG-IGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESI-PKK--FRPL-KNR 81 (514)
T ss_pred CCCEEEEEEECCCCCee-CCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhh-hhh--cccc-CCC
Confidence 35577899999999885 678889965555554443 2 7899999 565432 110 0111 122
Q ss_pred eEEEEccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC-CCCeEEEEecCCcc
Q 014311 284 FRIITVSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH-GFCSVLVDLRGNYG 362 (427)
Q Consensus 284 ~~vVvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~-g~~~IlveGG~GGg 362 (427)
..+|++++..... ..+.+++.. ++.++++.|++. +.++|||.| |
T Consensus 82 ~nIVLSr~~~~~~---------~~~~v~v~~----------------------sl~eal~~lk~~~~~~dI~VIG---G- 126 (514)
T PTZ00164 82 INVVLSRTLTEEE---------ADPGVLVFG----------------------SLEDALRLLAEDLSIEKIFIIG---G- 126 (514)
T ss_pred eEEEEcCCCCccc---------CCCCEEEeC----------------------CHHHHHHHHhccCCCCcEEEEc---h-
Confidence 3577777643210 011122222 789999999984 778999994 5
Q ss_pred cHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeee-eEEecCc
Q 014311 363 DLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQ-PKMSSQS 420 (427)
Q Consensus 363 ~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~-~~~~g~d 420 (427)
+++.++|++++++||++|++. ..+| +|.++|+.++ . ..|+++. .+.+.++
T Consensus 127 --~~Iy~~~L~~~lvDel~LTvI-~~~g-eGD~~FP~~~---~-~~~~l~~~s~~~~~~ 177 (514)
T PTZ00164 127 --ASVYREALSANLLDKIYLTRV-NSEY-ECDVFFPKIP---E-SFFIVAIVSQTFSTN 177 (514)
T ss_pred --HHHHHHHhcCCCCCEEEEEEE-Eecc-ccCccCCCCC---c-hhcEEEEEEEeccCC
Confidence 566999999999999999999 5566 5667744322 2 2355555 4555544
No 29
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=98.64 E-value=5.1e-07 Score=95.37 Aligned_cols=147 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHhhcc--CEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQEY--DAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~~~--DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
+.+.+|++.+|-|. .+|...|--..+...++... ++|||| +|.......+ +.-..+|+|++.......
T Consensus 2 i~lI~A~~~n~~IG-~~~~LPW~~peDl~~Fk~~T~~~tVVMGRkTyEsi~~~L-------p~R~niVlSr~~~~~~~~- 72 (505)
T PRK00478 2 IKLIWCEDLNFGIA-KNNQIPWKIDEELNHFHQTTTNHTIVMGYNTFQAMNKIL-------ANQANIVISKKHQRELKN- 72 (505)
T ss_pred EEEEEEECCCCccc-CCCCCCCCCHHHHHHHHHHhCCCeEEEehHHHHhhhhcC-------CCCeEEEECCCCccccCC-
Confidence 67889999999885 78899998777777777655 999999 5654321111 112356777664211000
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
...+.+ .+ |+.++++. ....+|||.| | ++++.+|++ .+||
T Consensus 73 ------~~~v~v-~~----------------------sl~~~L~~---~~~~dI~IIG---G---~~Ly~~~l~--~vDe 112 (505)
T PRK00478 73 ------NNELFV-FN----------------------DLKKLLID---FSNVDLFIIG---G---KKTIEQFIK--YADQ 112 (505)
T ss_pred ------CCCeEE-EC----------------------CHHHHHHh---CCCCCEEEEC---h---HHHHHHHHH--hCCE
Confidence 001112 11 67777553 3336899994 5 456999997 4999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEe
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
+++++.|+.+|+ +.+ + +.+ ...|++++.+.+++ ++.++|
T Consensus 113 l~lT~Ip~~~g~-d~~----f-~~~-~~~~~Lv~~~~~~~-~v~~~Y 151 (505)
T PRK00478 113 LIISKLNADYKC-DLF----V-NLN-YDDFSLVQTKEYDQ-FVVEYW 151 (505)
T ss_pred EEEEEeccccCC-CCC----C-CCC-hhhheeeeeEEcCc-EEEEEE
Confidence 999999999995 443 2 222 46899999999987 777777
No 30
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.61 E-value=1.4e-07 Score=78.96 Aligned_cols=76 Identities=30% Similarity=0.345 Sum_probs=62.0
Q ss_pred CcEEEEEEe-CCeEEEEEecCCC--CCCcHHHHHHHHH--hh------------------------hcCCCEEEEcCCCC
Q 014311 99 PMVGCVIVK-DGKIVGEGFHPKA--GQPHAEVFALRDA--GE------------------------LAEGATAYVSLEPC 149 (427)
Q Consensus 99 ~~vGaviv~-~g~ii~~g~n~~~--~~~HAE~~ai~~~--~~------------------------~~~~~tlY~t~ePC 149 (427)
+.|-|.+|+ +|+++..+.|... -..|||+|.+.-. +. ...|++||||+.||
T Consensus 8 R~VvA~lv~~~G~l~daa~NtNa~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlqcC 87 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNTNADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQCC 87 (136)
T ss_pred cceeEEEECCCCcEEEeeeccCCccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEechhH
Confidence 568888888 9999999987654 4579999998643 11 13799999999999
Q ss_pred CCCCCChhhHHHHHhcCc-------cEEEEeecCCCCC
Q 014311 150 NHYGRTPPCTEALIKAKV-------KKVVVGMLDPNPI 180 (427)
Q Consensus 150 ~~~g~t~~C~~ai~~~gi-------~~vv~~~~d~~~~ 180 (427)
.||+..+..+.. .+|||+..||-+.
T Consensus 88 ------kMCAalv~a~~d~pg~~~~~~vvY~~ed~G~L 119 (136)
T PF14439_consen 88 ------KMCAALVCAASDRPGRRVPIDVVYLNEDPGSL 119 (136)
T ss_pred ------HHHHHHHHHHhhCcCCccceEEEEecCCCCcc
Confidence 999999999876 8899999888654
No 31
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.27 E-value=6.4e-06 Score=71.68 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhh----cCCCEEEE----cC
Q 014311 80 YMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGEL----AEGATAYV----SL 146 (427)
Q Consensus 80 ~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~----~~~~tlY~----t~ 146 (427)
..+.|.+.++++..- .-+.+|||+|+. ||+|+. |.|.. ..+.|||+.||.++... ++...++. ..
T Consensus 3 l~~~a~~a~~~ay~P-yS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~~i~~i~vv~~~~~~~ 80 (127)
T TIGR01354 3 LFKAAQEARKNAYAP-YSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYRKFVAIAVADSADDPV 80 (127)
T ss_pred HHHHHHHHHHhcCCC-cCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCCCeEEEEEEeCCCCCc
Confidence 456677777765533 234689999997 899888 98865 35679999999988443 33344443 57
Q ss_pred CCCCCCCCChhhHHHHHhcC
Q 014311 147 EPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 147 ePC~~~g~t~~C~~ai~~~g 166 (427)
.|| .||...|...+
T Consensus 81 sPC------G~Crq~l~e~~ 94 (127)
T TIGR01354 81 SPC------GACRQVLAEFA 94 (127)
T ss_pred Ccc------HHHHHHHHHhC
Confidence 999 99999999986
No 32
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=98.24 E-value=1.3e-05 Score=72.43 Aligned_cols=137 Identities=9% Similarity=0.006 Sum_probs=85.5
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
+.+..|++.||-|. .+|...|--..+...+++ .-.++||| +|..... + +.... ..+|++++.. .
T Consensus 2 i~~I~A~~~~~~IG-~~~~lPW~~~~D~~~Fk~~T~~~~vIMGRkTyes~~-----~-plp~r-~~iVlSr~~~--~--- 68 (159)
T PRK10769 2 ISLIAALAVDRVIG-MENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIG-----R-PLPGR-KNIVISSQPG--T--- 68 (159)
T ss_pred EEEEEEECCCCcEe-cCCCcCcCCHHHHHHHHHHhCCCeEEEeHHHHHhhh-----h-hcCCC-cEEEECCCCC--C---
Confidence 67889999999985 678889965566555553 56799999 5654321 1 11122 2566766421 0
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
. + .+.+ . . ++.++++.++ +.++|||.| | ++++.+|++. +||
T Consensus 69 ---~--~-~v~~-~---------------------~-~l~~~l~~~~--~~~~I~viG---G---~~iy~~~l~~--~De 109 (159)
T PRK10769 69 ---D--D-RVTW-V---------------------K-SVDEALAAAG--DVPEIMVIG---G---GRVYEQFLPK--AQR 109 (159)
T ss_pred ---C--C-CEEE-E---------------------C-CHHHHHHHhc--CCCCEEEEC---c---HHHHHHHHHH--CCE
Confidence 0 0 1111 1 1 6888888554 346899994 5 4669999976 999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEe
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMS 417 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~ 417 (427)
++|++.|+.+.++ ..++.+ +...|+++..+..
T Consensus 110 l~lT~i~~~~~gD--~~fP~~----~~~~~~~~~~~~~ 141 (159)
T PRK10769 110 LYLTHIDAEVEGD--THFPDY----EPDEWESVFSEFH 141 (159)
T ss_pred EEEEEECccccCC--EECCCC----ChHHCEEEEEEec
Confidence 9999999998743 332222 1235666654443
No 33
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=98.03 E-value=0.0001 Score=66.73 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=92.0
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHh--hccCEEEEc-ccccccc-CCCCCCCCCCCCCeEEEEccCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLL--QEYDAIILS-ASSTKKY-SIPASQEPDANQPFRIITVSNHASPIRI 298 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r--~~~DaiLvG-~T~~~d~-p~l~~r~~~~~~P~~vVvd~~~~l~~~~ 298 (427)
|.+.+|++.+|-|. .+|...|--..+...++ ..-.+|||| +|...-. -.| +.-..+|++++......
T Consensus 2 i~lI~A~~~n~~IG-~~~~lPW~~p~Dl~~Fk~~T~~~~vIMGrkT~eslp~~pL-------p~R~niVlSr~~~~~~~- 72 (161)
T PF00186_consen 2 ISLIVAVDKNGGIG-KDGKLPWHLPEDLKFFKKLTTGNPVIMGRKTFESLPFRPL-------PGRINIVLSRNPDYEPE- 72 (161)
T ss_dssp EEEEEEEETTSEEE-BTTBSSSSSHHHHHHHHHHHTTCEEEEEHHHHHHSTGSSB-------TTSEEEEESSSTTSCTT-
T ss_pred EEEEEEECCCCccc-CCCccccccHHHHHHHHHccCCccEEEeeCchhcCCccCC-------CCCeEEEEEcCcccccC-
Confidence 67889999999995 67888996555544443 345699999 5654422 111 23456888888663221
Q ss_pred CccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCcc
Q 014311 299 PGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378 (427)
Q Consensus 299 ~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvD 378 (427)
.+.++ + ++.++++.+.+. .++|+|.| | +++..+|+. ++|
T Consensus 73 ---------~~~~~-~----------------------s~~~al~~~~~~-~~~i~ViG---G---~~iy~~~l~--~~d 111 (161)
T PF00186_consen 73 ---------GVEVV-S----------------------SLEEALELAKDK-DEEIFVIG---G---AEIYEQFLP--YAD 111 (161)
T ss_dssp ---------TSEEE-S----------------------SHHHHHHHHTTS-ESEEEEEE-------HHHHHHHHH--GES
T ss_pred ---------Cceee-C----------------------CHHHHHHHhhcc-CCcEEEEC---C---HHHHHHHHH--hCC
Confidence 11122 2 689999844444 89999995 4 677999998 999
Q ss_pred EEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec
Q 014311 379 KIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS 418 (427)
Q Consensus 379 El~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g 418 (427)
+++++..+.-.- +-.. |+.+ +...|+++..+...
T Consensus 112 ~l~lT~I~~~~~--~D~~---fP~~-d~~~~~~~~~~~~~ 145 (161)
T PF00186_consen 112 RLYLTRIDGDFE--GDTF---FPEI-DESEFKLVSEEEHP 145 (161)
T ss_dssp EEEEEEESSEST--TSEE---CSSC-CTTTEEEEEEEEEE
T ss_pred eEEEEEEcCccc--cceE---CCCC-ChHHCEEEEEEecc
Confidence 999999996663 2223 2222 23577777776665
No 34
>PRK06848 hypothetical protein; Validated
Probab=97.14 E-value=0.005 Score=54.39 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhh----cCCCEEEE--
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGEL----AEGATAYV-- 144 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~----~~~~tlY~-- 144 (427)
.++..++.|.++++++.. . .+.+|||++.. ||+|+ .|.|-. ..+.|||..||-++-.. ++-..+..
T Consensus 6 ~~~~L~~~A~~a~~~ay~-p-s~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~~i~~i~~v~~~ 82 (139)
T PRK06848 6 EDYELIKAAEKVIEKRYR-N-DWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDHEIDTIVAVRHP 82 (139)
T ss_pred HHHHHHHHHHHHHHhccC-C-CCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCCceEEEEEEecC
Confidence 456788888888877754 4 46899999998 88886 777743 34679999999887322 21111121
Q ss_pred ----------cCCCCCCCCCChhhHHHHHhcC
Q 014311 145 ----------SLEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 145 ----------t~ePC~~~g~t~~C~~ai~~~g 166 (427)
...|| .+|-..|.+.+
T Consensus 83 ~~~~~~~~~~~~~PC------G~CRQvl~E~~ 108 (139)
T PRK06848 83 KPHEDDREIWVVSPC------GACRELISDYG 108 (139)
T ss_pred cccccccCCCccCCC------hhhHHHHHHhC
Confidence 24699 99999999875
No 35
>PRK05578 cytidine deaminase; Validated
Probab=96.77 E-value=0.015 Score=50.95 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhhc--CCCEEEE------c
Q 014311 79 FYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGELA--EGATAYV------S 145 (427)
Q Consensus 79 ~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~~--~~~tlY~------t 145 (427)
..++.|.+..+++..-. -+.+|||++.. ||+|. .|.|-. ..+.|||..||-++-..- +=-.+.+ .
T Consensus 5 ~L~~~a~~~~~~ay~Py-S~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i~~i~vv~~~~~~ 82 (131)
T PRK05578 5 ELIEAAIEASEKAYAPY-SKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGGRLVAIACVGETGEP 82 (131)
T ss_pred HHHHHHHHHHHhcCCCc-CCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCCceEEEEEEecCCCc
Confidence 46777777777665332 34689999998 88875 666643 346899999998873210 1122222 2
Q ss_pred CCCCCCCCCChhhHHHHHhcC
Q 014311 146 LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 ~ePC~~~g~t~~C~~ai~~~g 166 (427)
..|| .+|-..|.+..
T Consensus 83 ~sPC------G~CRQ~l~e~~ 97 (131)
T PRK05578 83 LSPC------GRCRQVLAEFG 97 (131)
T ss_pred cCcc------HHHHHHHHHhC
Confidence 5799 99999999774
No 36
>PRK12411 cytidine deaminase; Provisional
Probab=96.42 E-value=0.033 Score=48.79 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhh--cCCCEEEEc-----
Q 014311 78 GFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGEL--AEGATAYVS----- 145 (427)
Q Consensus 78 ~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~--~~~~tlY~t----- 145 (427)
+...+.|.++++++.. ...+.+|||++.. ||+|+ .|.|-. ..+.|||..||-++-.. .+=.++++.
T Consensus 4 ~~L~~~a~~~~~~ay~-pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~~~i~~i~v~~~~~~ 81 (132)
T PRK12411 4 KQLIQEAIEARKQAYV-PYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKR 81 (132)
T ss_pred HHHHHHHHHHHHhcCC-CccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCCCceEEEEEEeCCCC
Confidence 3566777777766553 3234689999987 89886 777743 24679999999887321 111233332
Q ss_pred -CCCCCCCCCChhhHHHHHhc
Q 014311 146 -LEPCNHYGRTPPCTEALIKA 165 (427)
Q Consensus 146 -~ePC~~~g~t~~C~~ai~~~ 165 (427)
..|| .+|-..|.+.
T Consensus 82 ~~sPC------G~CRQ~l~Ef 96 (132)
T PRK12411 82 PVPPC------GACRQVMVEL 96 (132)
T ss_pred CcCCc------hhHHHHHHHh
Confidence 3699 9999999985
No 37
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=96.20 E-value=0.14 Score=46.80 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=81.1
Q ss_pred eEEEEEeeccCceeecCCCCCccc-cch--HHHHHh------hccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccC
Q 014311 222 FATLRYTLSVNGHVLDQLGEGVAE-SGG--YYSQLL------QEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSN 291 (427)
Q Consensus 222 ~V~~k~A~SLDG~Ia~~~g~~~wi-~~~--~~~~~r------~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~ 291 (427)
-+-+..|+|-+.=| +.+|...|- ..+ ++.+.. ..-.|++|| .|..--... -|. -+.-..||++++
T Consensus 3 ~~~~Vva~~~~mGI-Gk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k--~RP--L~gRiNiVLSR~ 77 (190)
T KOG1324|consen 3 LLNLVVALSPNMGI-GKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEK--FRP--LPGRINVVLSRS 77 (190)
T ss_pred eeEEEEEEccccCc-ccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcc--cCC--CCCceEEEEecc
Confidence 34566777777666 578888895 322 333333 245599999 565332111 010 134467999998
Q ss_pred CCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC----CCCeEEEEecCCcccHHHH
Q 014311 292 HASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH----GFCSVLVDLRGNYGDLEML 367 (427)
Q Consensus 292 ~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~----g~~~IlveGG~GGg~L~~l 367 (427)
+..+... ... +++.+ .+..+|+.|.+. .+..|||.| || .+
T Consensus 78 ~~~~~~~-------t~~-~~~~~----------------------slesAl~lL~~pp~~~~ve~vfvIG---G~---~v 121 (190)
T KOG1324|consen 78 LKEDFAP-------TEN-VFLSS----------------------SLESALDLLEEPPSSNSVEMVFVIG---GS---EV 121 (190)
T ss_pred cCcCcCC-------ccC-EEEec----------------------cHHHHHHhhcCCccccceeEEEEEc---CH---HH
Confidence 7643221 112 33333 588899999875 669999994 54 55
Q ss_pred HHHHHHCCCccEEEEEEEeeEeC
Q 014311 368 LKEGIEQNLLQKIVVEVLPVWNG 390 (427)
Q Consensus 368 ~~sfl~~gLvDEl~l~i~P~llG 390 (427)
.++.+++.+.|++++|-.=.-+-
T Consensus 122 y~~al~~p~~~~i~~T~I~~~~~ 144 (190)
T KOG1324|consen 122 YSEALNSPRCDAIHITEIFQSFE 144 (190)
T ss_pred HHHHHcCcCcceEEEEEecccCC
Confidence 99999999999999987554333
No 38
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=96.07 E-value=0.035 Score=54.61 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC------CCCCcHHHHHHHHHhhh--cCCCEEEEcC
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK------AGQPHAEVFALRDAGEL--AEGATAYVSL 146 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~------~~~~HAE~~ai~~~~~~--~~~~tlY~t~ 146 (427)
.++..++.|.+.++++. ...-+.+|||++.. ||+|+ .|.|-. ..+.|||..||-++-.. .+=..+.++.
T Consensus 21 ~~~~L~~~a~~a~~~Ay-aPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~~i~~Iav~~ 98 (283)
T TIGR01355 21 DPKLLPKLIPKAASYAR-APISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNERGLNDLAVSY 98 (283)
T ss_pred hHHHHHHHHHHHHhcCc-CCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCCceEEEEEEe
Confidence 45577777766666554 44457899999988 88875 677644 22579999999887322 1235567778
Q ss_pred CCCCCCCCChhhHHHHHhc
Q 014311 147 EPCNHYGRTPPCTEALIKA 165 (427)
Q Consensus 147 ePC~~~g~t~~C~~ai~~~ 165 (427)
.|| .+|-..|.+.
T Consensus 99 ~PC------G~CRQ~l~Ef 111 (283)
T TIGR01355 99 APC------GHCRQFLNEI 111 (283)
T ss_pred CCc------chhHHHHHHh
Confidence 899 9999999986
No 39
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.032 Score=48.77 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhh----cCCCEEEEc----C
Q 014311 80 YMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGEL----AEGATAYVS----L 146 (427)
Q Consensus 80 ~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~----~~~~tlY~t----~ 146 (427)
.+..|.+.+ +......-+.+|||++.. ||+| -+|.|-. .-+.|||..||-+|-.. +.-..+|.. .
T Consensus 8 l~~~a~~a~-~~ay~PYS~F~VGAa~~t~~G~i-~tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~v~~~~~~~~ 85 (134)
T COG0295 8 LFALAPEAA-ANAYAPYSKFKVGAALRTKDGRI-YTGANVENASYGLTVCAERSAIFKAISEGKRKFDAVVVVADTGKPV 85 (134)
T ss_pred HHHHHHHHH-HhccCcccCCcEEEEEEeCCCCE-EEEEeeecccccchhhHHHHHHHHHHHcCCCcEEEEEEEcCCCCCc
Confidence 344444444 444455557899999998 7766 4777743 34679999999987322 222223322 6
Q ss_pred CCCCCCCCChhhHHHHHhcC
Q 014311 147 EPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 147 ePC~~~g~t~~C~~ai~~~g 166 (427)
-|| .+|-.-|....
T Consensus 86 sPC------G~CRQ~i~Ef~ 99 (134)
T COG0295 86 SPC------GACRQVLAEFC 99 (134)
T ss_pred CCc------HHHHHHHHHhc
Confidence 799 99999998865
No 40
>PRK08298 cytidine deaminase; Validated
Probab=95.93 E-value=0.056 Score=47.56 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHh---hh-cCCCEEEEc--
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAG---EL-AEGATAYVS-- 145 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~---~~-~~~~tlY~t-- 145 (427)
+++.++.|.++.+++. ... .+|||+|.. ||+|+ +|.|-. ..+.-||..||-.+- .+ .+-..++..
T Consensus 4 ~~~L~~~A~~a~~~aY-~PY--S~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~~~~~i~v~~~~~ 79 (136)
T PRK08298 4 EQALYDVAKQLIEQRY-PNG--WGGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKRVTHSICVARENE 79 (136)
T ss_pred HHHHHHHHHHHHHhcc-CCC--CceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCceEEEEEEEcCCC
Confidence 4567888877766654 333 389999987 89886 787742 346799999998762 21 111111211
Q ss_pred ------CCCCCCCCCChhhHHHHHhcCc
Q 014311 146 ------LEPCNHYGRTPPCTEALIKAKV 167 (427)
Q Consensus 146 ------~ePC~~~g~t~~C~~ai~~~gi 167 (427)
..|| .+|-..|...+-
T Consensus 80 ~~~~~~~sPC------G~CRQvl~Ef~~ 101 (136)
T PRK08298 80 HSELKVLSPC------GVCQERLFYWGP 101 (136)
T ss_pred cCCCcccCCC------hhHHHHHHHhCC
Confidence 3599 999999998853
No 41
>PLN02402 cytidine deaminase
Probab=95.73 E-value=0.072 Score=52.80 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC---C-C--CCcHHHHHHHHHhhh--cCCCEEEEcCC
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK---A-G--QPHAEVFALRDAGEL--AEGATAYVSLE 147 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~---~-~--~~HAE~~ai~~~~~~--~~~~tlY~t~e 147 (427)
++-.+.++ ..|++......-+.+|||++.. +|+|. .|.|-. . . +.|||..||-++-.. .+=..+.|+..
T Consensus 25 ~~ll~~l~-~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~~i~~iaV~~s 102 (303)
T PLN02402 25 LQLLPSLV-KSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEPHLKYVAVSAA 102 (303)
T ss_pred HHHHHHHH-HHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCCceEEEEEEeC
Confidence 44444444 5555444455556799999987 88874 676642 1 1 679999999887221 11235677788
Q ss_pred CCCCCCCChhhHHHHHhc
Q 014311 148 PCNHYGRTPPCTEALIKA 165 (427)
Q Consensus 148 PC~~~g~t~~C~~ai~~~ 165 (427)
|| .+|-..|...
T Consensus 103 PC------G~CRQ~l~Ef 114 (303)
T PLN02402 103 PC------GHCRQFFQEI 114 (303)
T ss_pred CC------cccHHHHHHh
Confidence 99 9999999977
No 42
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=95.70 E-value=0.048 Score=50.64 Aligned_cols=110 Identities=28% Similarity=0.444 Sum_probs=66.8
Q ss_pred CCCcEEEEEEe--CCeEEEEEe--cCCCCCCcHHHHHHHHHhhhc-------CCCEEEEcCCCCCCCCCChh----hHHH
Q 014311 97 PNPMVGCVIVK--DGKIVGEGF--HPKAGQPHAEVFALRDAGELA-------EGATAYVSLEPCNHYGRTPP----CTEA 161 (427)
Q Consensus 97 ~~~~vGaviv~--~g~ii~~g~--n~~~~~~HAE~~ai~~~~~~~-------~~~tlY~t~ePC~~~g~t~~----C~~a 161 (427)
++..+=|.-|+ +|.-+-.|+ |......|||+.-|....... -.-|.|+|..|| +. |+..
T Consensus 22 r~~t~Lcy~v~~~~~~~~~~g~~~n~~~~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC------~~~~~~Ca~~ 95 (188)
T PF08210_consen 22 RNKTYLCYEVEGRDGSWVQRGYFRNENCKGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPC------PESDHCCAEK 95 (188)
T ss_dssp SSS-EEEEEEEEECTTEEEECECCSTTSTSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--------CC----HHHH
T ss_pred CCeEEEEEEEEEecCCCceEEEEECCCCCCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCC------cchhhHHHHH
Confidence 44567788887 555666666 433368999999998864432 247899999999 78 9999
Q ss_pred HHhc-------CccEEEEeecC-----CCCCCCchhHHHHhhCCcEEEEecccchhhcccccee
Q 014311 162 LIKA-------KVKKVVVGMLD-----PNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFI 213 (427)
Q Consensus 162 i~~~-------gi~~vv~~~~d-----~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~ 213 (427)
|+.. +|+=.+|.+.- +.+.....|+..|.++|+.|.. .-.+|-....+.|-
T Consensus 96 i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~i-M~~~df~~cw~~FV 158 (188)
T PF08210_consen 96 IAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEI-MSYKDFEYCWDNFV 158 (188)
T ss_dssp HHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE--SHHHHHHHHHCCE
T ss_pred HHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEE-cCHHHHHHHHHhcc
Confidence 9974 33334444321 1111135799999999999886 22334344444343
No 43
>PRK09027 cytidine deaminase; Provisional
Probab=95.70 E-value=0.073 Score=52.72 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC------CCCcHHHHHHHHHhhh--cCCCEEEEcCC
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA------GQPHAEVFALRDAGEL--AEGATAYVSLE 147 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~~~~~--~~~~tlY~t~e 147 (427)
+...+..-+..|++......-+.+|||++.. +|+|. .|.|-.. .+.|||..||-++-.. .+=..+.++..
T Consensus 49 ~~~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge~~i~~I~v~~s 127 (295)
T PRK09027 49 DDALALALLPLAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGEKAIADITVNYT 127 (295)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCCCceEEEEEEec
Confidence 4444444455555554455556899999988 88875 7877543 3679999999887322 23356667788
Q ss_pred CCCCCCCChhhHHHHHhc
Q 014311 148 PCNHYGRTPPCTEALIKA 165 (427)
Q Consensus 148 PC~~~g~t~~C~~ai~~~ 165 (427)
|| .+|-.-|.+.
T Consensus 128 PC------G~CRQ~l~E~ 139 (295)
T PRK09027 128 PC------GHCRQFMNEL 139 (295)
T ss_pred Cc------hhhHHHHHHh
Confidence 99 9999999876
No 44
>PRK09027 cytidine deaminase; Provisional
Probab=95.02 E-value=0.14 Score=50.73 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecC----CCCCCcHHHHHHHHH---hhh---cCCCEEEE
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHP----KAGQPHAEVFALRDA---GEL---AEGATAYV 144 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~----~~~~~HAE~~ai~~~---~~~---~~~~tlY~ 144 (427)
.++..++.|++.++++- ...-+-+|||+|.. ||+|+ .|.|- ..++..||..||..+ |.+ .+...|+.
T Consensus 188 ~~~~L~~~A~~aa~~SY-aPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~~i~lv~ 265 (295)
T PRK09027 188 TGDPLIQAALDAANRSH-APYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQRAVLVE 265 (295)
T ss_pred CHHHHHHHHHHHHHhcc-CCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEEEEEEEe
Confidence 44568888888888765 44456789999987 88886 56653 256789999999876 332 34455554
Q ss_pred c----CCCCCCCCCChhhHHHHHhcCc
Q 014311 145 S----LEPCNHYGRTPPCTEALIKAKV 167 (427)
Q Consensus 145 t----~ePC~~~g~t~~C~~ai~~~gi 167 (427)
. ..|| .+|...|...+-
T Consensus 266 ~~~~~ispc------g~cRq~L~ef~~ 286 (295)
T PRK09027 266 KADAKLSQW------DATQATLKALGC 286 (295)
T ss_pred CCCCCcCch------HHHHHHHHHhCC
Confidence 3 4689 999999887653
No 45
>PLN02182 cytidine deaminase
Probab=94.06 E-value=0.67 Score=46.65 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC------CCCcHHHHHHHHHhhh----cCCCEEEEc
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA------GQPHAEVFALRDAGEL----AEGATAYVS 145 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~~~~~----~~~~tlY~t 145 (427)
++....++ ..|++......-+.+|||++.. +|+|. .|.|-.. .+.|||..||.+|-.. +....+.+.
T Consensus 45 ~~ll~~Ll-~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~~i~~iaVaV~ 122 (339)
T PLN02182 45 PIRLPNLI-RKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEKDLCELAVAIS 122 (339)
T ss_pred HHHHHHHH-HHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCCceEEEEEEEe
Confidence 44444433 4444444444456799999987 88874 6776432 2689999999988332 211123222
Q ss_pred ------CCCCCCCCCChhhHHHHHhcC
Q 014311 146 ------LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 ------~ePC~~~g~t~~C~~ai~~~g 166 (427)
..|| .+|-.-|....
T Consensus 123 ~~~~~~~sPC------G~CRQfm~Ef~ 143 (339)
T PLN02182 123 TDGKEFGTPC------GHCLQFLMEMS 143 (339)
T ss_pred cCCCCCcCCC------chhHHHHHHhC
Confidence 6799 99999998874
No 46
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.66 Score=42.13 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhhhc--C-CCEEEEc------CCCC
Q 014311 84 CVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGELA--E-GATAYVS------LEPC 149 (427)
Q Consensus 84 a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~~--~-~~tlY~t------~ePC 149 (427)
+...|++......-+.+||||+.- +|+|. .|.|-. ..+.|||..||.++.-.- + .+-..+. ..||
T Consensus 27 l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~~~~aV~~~~~~~f~tPC 105 (173)
T KOG0833|consen 27 LARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGERKFRAIAVVAYEDGDFTTPC 105 (173)
T ss_pred HHHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcccceEEEEEecCCCCcCCCc
Confidence 334444444444446799999998 77764 677643 457899999999874320 1 1112222 5899
Q ss_pred CCCCCChhhHHHHHhcCcc-EEEEee
Q 014311 150 NHYGRTPPCTEALIKAKVK-KVVVGM 174 (427)
Q Consensus 150 ~~~g~t~~C~~ai~~~gi~-~vv~~~ 174 (427)
.-|..-|...+-. -|....
T Consensus 106 ------G~CRQfl~Ef~~~~~l~~~~ 125 (173)
T KOG0833|consen 106 ------GVCRQFLREFGNASLLLEYR 125 (173)
T ss_pred ------HHHHHHHHHHhhcceeeeec
Confidence 8999999998877 344433
No 47
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=91.13 E-value=0.36 Score=42.83 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhhh----cCCCEEEEcCCCCCCCCCChhhHHHHH----hcCccEEEEeecC
Q 014311 123 PHAEVFALRDAGEL----AEGATAYVSLEPCNHYGRTPPCTEALI----KAKVKKVVVGMLD 176 (427)
Q Consensus 123 ~HAE~~ai~~~~~~----~~~~tlY~t~ePC~~~g~t~~C~~ai~----~~gi~~vv~~~~d 176 (427)
.|||+.||.+|-++ -+..+|||...+| .-|-..|- ++|++++.+-..+
T Consensus 81 ~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC------~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 81 AHAEAGAIQQAYDAGKTVGRSMTMYVDRDVC------GYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred HHHHHHHHHHHHHhcCccCCeEEEEECcccc------hHHHHHHHHHHHHcCCCeEEEEecC
Confidence 49999999998543 5789999998889 88976654 5799998876653
No 48
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=83.05 E-value=6 Score=39.10 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHh-----hhcCCC--EEEE-
Q 014311 78 GFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAG-----ELAEGA--TAYV- 144 (427)
Q Consensus 78 ~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~-----~~~~~~--tlY~- 144 (427)
+..++.|++.++++- ...-+-+|||.|+. ||+|. .|.|-. +.+..||..||..+- ..+.+- .+.+
T Consensus 175 ~~l~~~A~~a~~~sY-aPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~i~~aVl~e 252 (283)
T TIGR01355 175 SHLKQQALKAANRSY-APYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGFEDIVRAVLVE 252 (283)
T ss_pred HHHHHHHHHHHHhcc-CCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhheeEEEEEe
Confidence 347788887777765 44456789999998 88876 666643 467899999998762 223221 1222
Q ss_pred ----cCCCCCCCCCChhhHHHHHhcC
Q 014311 145 ----SLEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 145 ----t~ePC~~~g~t~~C~~ai~~~g 166 (427)
...|| .+|...|-.-+
T Consensus 253 ~~~~~vs~~------~~~r~~l~~~~ 272 (283)
T TIGR01355 253 KADAKVSHE------ATARTLLETIA 272 (283)
T ss_pred cCCCccChH------HHHHHHHHHhC
Confidence 23577 78877776643
No 49
>PLN02402 cytidine deaminase
Probab=82.68 E-value=5 Score=39.98 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHH
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDA 133 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~ 133 (427)
.+..++.|++.++++. ...-+-+|||.|+. ||+|+ .|.|-. +.+.+||..||-.+
T Consensus 192 ~~~L~~~A~~a~~~sY-aPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~ 251 (303)
T PLN02402 192 SDDLKNEALEAANKSH-APYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAY 251 (303)
T ss_pred HHHHHHHHHHHHHccc-CCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHH
Confidence 3567888887777765 44456789999998 89876 676643 46789999999876
No 50
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=77.80 E-value=1.4 Score=37.87 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHhhh----cCCCEEEEcCCCCCCCCCChhhHHHHHhc-CccEEEEeecCCC
Q 014311 120 AGQPHAEVFALRDAGEL----AEGATAYVSLEPCNHYGRTPPCTEALIKA-KVKKVVVGMLDPN 178 (427)
Q Consensus 120 ~~~~HAE~~ai~~~~~~----~~~~tlY~t~ePC~~~g~t~~C~~ai~~~-gi~~vv~~~~d~~ 178 (427)
.+.+|+|..++..+.+. -+=..||+-+|||.. | ..|+.+|-.. ==.+|.|....+.
T Consensus 43 ~~~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~-~--~~C~~~l~~~~p~a~vt~s~~yg~ 103 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAHGVPPEQITELYTELEPCEL-G--GYCARMLRNSLPGAEVTYSFDYGT 103 (118)
T ss_pred CCCCChHHHHHHHHHHcCCcHHHHHHHHHhcccccc-c--chHHHHHHhhCCCCeEEEeccCCC
Confidence 66789999999987642 133569999999944 2 3499999886 2345888776553
No 51
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=68.71 E-value=13 Score=32.62 Aligned_cols=94 Identities=23% Similarity=0.371 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCCChhhHH
Q 014311 81 MRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGRTPPCTE 160 (427)
Q Consensus 81 m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~t~~C~~ 160 (427)
|+.++++=.. ...-|||+++|+|-..-.. ....=...+++..+.++|+.++-.. -|| -=+.
T Consensus 1 m~~~~~~L~e--------~~~S~Vv~~~~~i~t~~~r----Gv~pL~~ll~~~~~~l~ga~vaDKv-----vGK--AAA~ 61 (134)
T PF08973_consen 1 MEEAIKLLHE--------ENYSCVVLKDGEIRTSDGR----GVKPLYDLLNEEPEFLKGAVVADKV-----VGK--AAAA 61 (134)
T ss_dssp --HHHHHHHH--------TT-SEEEESSSEEEEE--S----TTHHHHHHHHH-S---TT-EEEEEE-----E-H--HHHH
T ss_pred CHHHHHHHHh--------CCceEEEEeCCEEEEeCCC----ChHHHHHHHHhChhhhhcccHHHHH-----HhH--HHHH
Confidence 4555555444 2356899999995432222 2344444566666678999999754 233 3567
Q ss_pred HHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEe
Q 014311 161 ALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVG 199 (427)
Q Consensus 161 ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g 199 (427)
.++..||++|+-.. .+..+.+.|+++||+|..+
T Consensus 62 lmv~ggv~~vyA~v------iS~~Al~~L~~~gI~v~y~ 94 (134)
T PF08973_consen 62 LMVLGGVKEVYADV------ISEPALDLLEEAGIKVSYD 94 (134)
T ss_dssp HHHHH--SEEEEEE------EEHHHHHHHHHTT--EEEE
T ss_pred HHHHhcHHHHHHHH------HhHHHHHHHHHcCCceeHh
Confidence 77888999988655 3456899999999999874
No 52
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=65.22 E-value=7.3 Score=33.63 Aligned_cols=39 Identities=36% Similarity=0.393 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhhh-------cCCCEEEE-------------cCCCCCCCCCChhhHHHHHhcCc
Q 014311 123 PHAEVFALRDAGEL-------AEGATAYV-------------SLEPCNHYGRTPPCTEALIKAKV 167 (427)
Q Consensus 123 ~HAE~~ai~~~~~~-------~~~~tlY~-------------t~ePC~~~g~t~~C~~ai~~~gi 167 (427)
.|||+.||.++-.. ++++.+|+ -..|| +.|+..+.+.||
T Consensus 67 ~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC------~nC~~~l~~~~v 125 (125)
T PF14431_consen 67 RCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPC------RNCAALLKHFGV 125 (125)
T ss_pred cccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCC------chHHHHHhhcCC
Confidence 59999999886332 33444443 23789 899999998876
No 53
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=51.70 E-value=20 Score=31.45 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHhhhc--------CCCEEEEcCCCCCCCCCChhhHHHHHhcC
Q 014311 122 QPHAEVFALRDAGELA--------EGATAYVSLEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 122 ~~HAE~~ai~~~~~~~--------~~~tlY~t~ePC~~~g~t~~C~~ai~~~g 166 (427)
...+|...|++.++.+ -.-+||+.+.|| ..|...|-+..
T Consensus 73 ~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC------~SC~~vi~qF~ 119 (133)
T PF14424_consen 73 NNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPC------ESCSNVIEQFK 119 (133)
T ss_pred cccHHHHHHHHHHHHhccccccCCceEEEEecCCcC------hhHHHHHHHHH
Confidence 3589999999876653 246899999999 99999888753
No 54
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=45.33 E-value=51 Score=28.33 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.0
Q ss_pred cCCcEEEEeC---CCCHHHHHHHHHHCCCCeEEEEecCCcccH
Q 014311 325 TKGIETVNLH---QLNLKAVLDYCYSHGFCSVLVDLRGNYGDL 364 (427)
Q Consensus 325 ~~~v~~i~~~---~~dl~~~l~~L~~~g~~~IlveGG~GGg~L 364 (427)
+.|++++..+ .-|+..+++.+.+.+..+|.|.|+ -||++
T Consensus 57 ~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga-~GgR~ 98 (123)
T PF04263_consen 57 SKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGA-LGGRF 98 (123)
T ss_dssp HCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES--SSSSH
T ss_pred hhccceecccccccCHHHHHHHHHHHCCCCEEEEEec-CCCcH
Confidence 4455555543 359999999999999999999988 67787
No 55
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=42.87 E-value=86 Score=27.19 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecC---CCCCCcHHHHHHHHH
Q 014311 78 GFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHP---KAGQPHAEVFALRDA 133 (427)
Q Consensus 78 ~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~---~~~~~HAE~~ai~~~ 133 (427)
+...+.|++.|+++-.- ...-++|++|+. +|+|..-.+-+ .+++..+.+.||..+
T Consensus 34 d~l~~~A~~Aa~~syaP-YS~~~sGvAL~~~~G~i~~G~y~EnAAfNPSl~PlQ~AL~~~ 92 (124)
T PF08211_consen 34 DPLVQAALEAANRSYAP-YSKCPSGVALLTSDGRIYTGRYAENAAFNPSLPPLQAALVQA 92 (124)
T ss_dssp SHHHHHHHHHHCT-B-T-TT---EEEEEEETTS-EEEEE-B--TTSTT-B-HHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCC-ccCCceeEEEEeCCCCEEEEEEEeecccCCChHHHHHHHHHH
Confidence 34788888888887533 334679999996 88887544322 256789999999865
No 56
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.51 E-value=67 Score=27.18 Aligned_cols=42 Identities=17% Similarity=0.035 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEE
Q 014311 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIV 381 (427)
Q Consensus 337 dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~ 381 (427)
.+.++++.|++.+..++.+..||..+ .+....|.++| +|+++
T Consensus 66 ~~~~~~~~L~~~~~~~i~i~~GG~~~--~~~~~~~~~~G-~d~~~ 107 (122)
T cd02071 66 LFPEVIELLRELGAGDILVVGGGIIP--PEDYELLKEMG-VAEIF 107 (122)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCC--HHHHHHHHHCC-CCEEE
Confidence 56888999999877555444321222 44566788899 78765
No 57
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.15 E-value=63 Score=33.58 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=87.0
Q ss_pred cEEEEeecCCCCCC-CchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccCceeecCCCCCcccc
Q 014311 168 KKVVVGMLDPNPIV-NSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAES 246 (427)
Q Consensus 168 ~~vv~~~~d~~~~~-~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~ 246 (427)
++|++|..-.-... .-.-++.|++.|.+|.. ++.+.+.++..........+.|.+.-.. | .. .+
T Consensus 7 k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~v-v~T~~A~~fi~~~~l~~l~~~~V~~~~~----~----~~------~~ 71 (399)
T PRK05579 7 KRIVLGVSGGIAAYKALELVRRLRKAGADVRV-VMTEAAKKFVTPLTFQALSGNPVSTDLW----D----PA------AE 71 (399)
T ss_pred CeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEE-EECHhHHHHHhHHHHHHhhCCceEcccc----c----cc------cC
Confidence 56777764221100 01235668889999988 7788777766544322223444322100 0 00 00
Q ss_pred ch-HHHHHhhccCEEEEc-ccc---------ccccCCCCCCCCCCCCCeEEEEccCCCCCCCCCccccCCCceEEEEecC
Q 014311 247 GG-YYSQLLQEYDAIILS-ASS---------TKKYSIPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKVIVFTDG 315 (427)
Q Consensus 247 ~~-~~~~~r~~~DaiLvG-~T~---------~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~~~v~t~~ 315 (427)
+. ..-++..++|++++- .|. ..|++..++-.. ...|+.++..-+.....+ +...
T Consensus 72 ~~~~hi~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la-~~~pvvi~Pamn~~m~~~-p~~~------------- 136 (399)
T PRK05579 72 AAMGHIELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLA-TTAPVLVAPAMNTQMWEN-PATQ------------- 136 (399)
T ss_pred CCcchhhcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHh-cCCCEEEEeCCChhHcCC-HHHH-------------
Confidence 10 112445689999998 552 233332221111 245554444333221111 0000
Q ss_pred CCCCccccccCCcEEEEe------------C-CCCHHHHHHHHHH------CCCCeEEEEecC--------------Ccc
Q 014311 316 EITVEPDMGTKGIETVNL------------H-QLNLKAVLDYCYS------HGFCSVLVDLRG--------------NYG 362 (427)
Q Consensus 316 ~~~~~~~l~~~~v~~i~~------------~-~~dl~~~l~~L~~------~g~~~IlveGG~--------------GGg 362 (427)
+....|++.|+.++.- + -.++.+++..+.+ ...+.++|.||| +.|
T Consensus 137 --~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG 214 (399)
T PRK05579 137 --RNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSG 214 (399)
T ss_pred --HHHHHHHHCCCEEECCCCccccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcc
Confidence 1223444455555532 1 2577777666653 267899999751 023
Q ss_pred cH-HHHHHHHHHCCC
Q 014311 363 DL-EMLLKEGIEQNL 376 (427)
Q Consensus 363 ~L-~~l~~sfl~~gL 376 (427)
.+ ..++..|.+.|-
T Consensus 215 ~~G~aiA~~l~~~Ga 229 (399)
T PRK05579 215 KMGYALARAAARRGA 229 (399)
T ss_pred hHHHHHHHHHHHCCC
Confidence 33 677899999884
No 58
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=35.50 E-value=6e+02 Score=27.45 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhh---cCCCEEEEcC-CCCC
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL---AEGATAYVSL-EPCN 150 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~---~~~~tlY~t~-ePC~ 150 (427)
.....=|..|...++... + |. + |+|+||++|+.|.-+.. ..++--.||++|++. ++|+++-.-. .|=
T Consensus 395 ~~e~~Dl~faw~v~K~vk---S-Na-I--Vvvkd~~~vgIgaGQ~s-Rvd~t~~Ai~rag~~~~~~~gav~aSDafFPf- 465 (513)
T PRK00881 395 EQELKDLLFAWKVVKHVK---S-NA-I--VYAKDGQTVGIGAGQMS-RVDSARIAIEKAGDAGLDLKGAVLASDAFFPF- 465 (513)
T ss_pred HHHHHHHHHHHHHHHhcC---C-Cc-E--EEEeCCeEEEECCCCcc-hHHHHHHHHHHHHHhccCcCCeEEEeeCCCCc-
Confidence 334455777777777532 2 22 4 88999999998874432 447777899988643 4777775432 566
Q ss_pred CCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEE
Q 014311 151 HYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTV 198 (427)
Q Consensus 151 ~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~ 198 (427)
+-|.....++||+-|+.-... -.....++...++||.++.
T Consensus 466 -----~Dtie~aa~~Gv~aIiqPgGS---irD~evI~aAne~gIamvf 505 (513)
T PRK00881 466 -----RDGVEAAAKAGITAIIQPGGS---IRDEEVIAAADEHGIAMVF 505 (513)
T ss_pred -----hhHHHHHHHcCCeEEEeCCCC---CChHHHHHHHHHcCCEEEE
Confidence 789999999999988874332 1123466777778887654
No 59
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=34.27 E-value=40 Score=29.60 Aligned_cols=51 Identities=20% Similarity=0.075 Sum_probs=32.9
Q ss_pred CCcHHHHHH-HHHhhhcCCCEEEEc-CCCCCCCCCChhhHHHHH---hcCccEEEEeec
Q 014311 122 QPHAEVFAL-RDAGELAEGATAYVS-LEPCNHYGRTPPCTEALI---KAKVKKVVVGML 175 (427)
Q Consensus 122 ~~HAE~~ai-~~~~~~~~~~tlY~t-~ePC~~~g~t~~C~~ai~---~~gi~~vv~~~~ 175 (427)
..|.|..+- .+.....+.++||++ ..||... --|..++- -.|=+=-|+...
T Consensus 68 ~~HVE~k~Aa~Mr~~g~~~a~vvIN~n~pC~~~---~gC~~~l~~iLP~GstLtV~~~~ 123 (135)
T PF14428_consen 68 ASHVEGKAAAWMRRNGIKHATVVINPNGPCGGR---DGCDQLLPAILPEGSTLTVHWPG 123 (135)
T ss_pred hhhhhHHHHHHHHHcCCeEEEEEEeCCCCCCCc---cCHHHHHHHhCCCCCEEEEEeeC
Confidence 359999875 344456789999999 9999321 12876543 345554555543
No 60
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=33.59 E-value=2.2e+02 Score=27.17 Aligned_cols=60 Identities=30% Similarity=0.288 Sum_probs=44.3
Q ss_pred EeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEc-C-CCCCCCCCChhhHHHHHhcC-ccEEEEee
Q 014311 106 VKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVS-L-EPCNHYGRTPPCTEALIKAK-VKKVVVGM 174 (427)
Q Consensus 106 v~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t-~-ePC~~~g~t~~C~~ai~~~g-i~~vv~~~ 174 (427)
|+||..|+.|.....+.|.|=+.+|.+. ..++.|+|.+ . .|. .=...++.+| |+|++.+.
T Consensus 16 I~DG~ti~~gGf~~~~~P~ali~~l~r~--~~~~Ltlv~~~~g~~~-------~g~~~L~~~G~Vkr~i~s~ 78 (222)
T TIGR02429 16 IPDGATIMIGGFGTAGQPFELIDALIDT--GAKDLTIVSNNAGNGE-------IGLAALLKAGQVRKLICSF 78 (222)
T ss_pred CCCCCEEEECCcCCccCcHHHHHHHHhc--CCCCcEEEecCCCCCC-------ccHHHHHhCCCEeEEEccc
Confidence 6788889888877677788877787764 4689999983 2 222 2377888888 88998874
No 61
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=32.59 E-value=54 Score=25.78 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=37.5
Q ss_pred CCCCC-CCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccce
Q 014311 148 PCNHY-GRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAF 212 (427)
Q Consensus 148 PC~~~-g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f 212 (427)
+|.+. +....-+..|...|+.-||.+.- .......|++.||+|+.+ ......+..+.|
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~v~~li~~~i------G~~~~~~L~~~gI~v~~~-~~~~i~~~l~~~ 92 (94)
T PF02579_consen 34 ACNEGGGGGDKIAKFLAEEGVDVLICGGI------GEGAFRALKEAGIKVYQG-AGGDIEEALEAY 92 (94)
T ss_dssp ECCCSSCHSTHHHHHHHHTTESEEEESCS------CHHHHHHHHHTTSEEEES-TSSBHHHHHHHH
T ss_pred ccccccccchhHHHHHHHcCCCEEEEeCC------CHHHHHHHHHCCCEEEEc-CCCCHHHHHHHH
Confidence 44433 23345677777899998888763 344678899999999996 333444444433
No 62
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.13 E-value=69 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHCCCCeEEEEecCCcccH-HHHHHHHHHCCCccEEE
Q 014311 336 LNLKAVLDYCYSHGFCSVLVDLRGNYGDL-EMLLKEGIEQNLLQKIV 381 (427)
Q Consensus 336 ~dl~~~l~~L~~~g~~~IlveGG~GGg~L-~~l~~sfl~~gLvDEl~ 381 (427)
.+...+++.|++.|.++|++.+ ||.+ ++=...|-+.| +|+++
T Consensus 78 ~l~~~lve~lre~G~~~i~v~~---GGvip~~d~~~l~~~G-~~~if 120 (143)
T COG2185 78 TLVPGLVEALREAGVEDILVVV---GGVIPPGDYQELKEMG-VDRIF 120 (143)
T ss_pred HHHHHHHHHHHHhCCcceEEee---cCccCchhHHHHHHhC-cceee
Confidence 3678899999999999999763 5555 33233454455 47764
No 63
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=28.82 E-value=1.3e+02 Score=32.28 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=63.2
Q ss_pred EEEEEeCCeEEEEEecCCCCCCcHHHHHHHHH---hhhcCCCEEEEc-CCCCCCCCCChhhHHHHHhcCccEEEEeecCC
Q 014311 102 GCVIVKDGKIVGEGFHPKAGQPHAEVFALRDA---GELAEGATAYVS-LEPCNHYGRTPPCTEALIKAKVKKVVVGMLDP 177 (427)
Q Consensus 102 Gaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~---~~~~~~~tlY~t-~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~ 177 (427)
.-|+++||+.|+.|.-+.. ..++-..|+.+| +.+++|+.|=+- ..|= +-|.....++||+-||- |
T Consensus 413 AIv~akd~~tvGiGaGQ~s-RV~s~riA~~kA~~~~~~~~G~vlASDAFFPF------~D~ve~aa~aGi~aIiQ----P 481 (511)
T TIGR00355 413 AIVYAKNNMTVGVGAGQMS-RVGSAKIAGIKADDEGLEAKGSSLASDAFFPF------RDGVEEAAAAGITCIIQ----P 481 (511)
T ss_pred eEEEEeCCeEEEecCCCcc-HHHHHHHHHHHHHhhCCCccCcEEEeccccCC------CccHHHHHHcCCEEEEc----C
Confidence 4566679999999875543 457777899988 566789988764 5788 89999999999999886 3
Q ss_pred CCCC-CchhHHHHhhCCcEEEE
Q 014311 178 NPIV-NSKGLERLRDAGIDVTV 198 (427)
Q Consensus 178 ~~~~-~~~~~~~l~~~gi~V~~ 198 (427)
-..+ ....++...++||..+.
T Consensus 482 GGSiRD~evI~aa~e~giaMvf 503 (511)
T TIGR00355 482 GGSMRDEDSIWAADEHGIVMVF 503 (511)
T ss_pred CCCCCcHHHHHHHHHhCCEEEE
Confidence 2221 23467777788876554
No 64
>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]
Probab=27.61 E-value=86 Score=24.50 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEE
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGE 114 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~ 114 (427)
.+--+.||+.|++.|.+-..-..+| .+|-+.++...|+-.
T Consensus 33 l~~lDgymNiaLe~tee~~ngql~n-~ygdaFirGnnVlyI 72 (77)
T KOG1783|consen 33 LVCLDGYMNIALESTEEYVNGQLKN-KYGDAFIRGNNVLYI 72 (77)
T ss_pred ehhhhhHHHHHHHHHHHHhcCcccc-cccceeeccccEEEE
Confidence 4456789999999999887655554 588888887777644
No 65
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=27.22 E-value=1.1e+02 Score=28.36 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=31.9
Q ss_pred cccCCcEEEEeC----CCCHHHHHHHHHHCCCCeEEEEecCCcccH
Q 014311 323 MGTKGIETVNLH----QLNLKAVLDYCYSHGFCSVLVDLRGNYGDL 364 (427)
Q Consensus 323 l~~~~v~~i~~~----~~dl~~~l~~L~~~g~~~IlveGG~GGg~L 364 (427)
.++.+++++..+ .-|...+++.+.+++..+|++.|+ -||++
T Consensus 60 ~~~~~~~~~~~p~~KD~TD~e~Al~~~~~~~~~~i~i~Ga-~GgR~ 104 (208)
T cd07995 60 YKSKGVEIIHFPDEKDFTDFEKALKLALERGADEIVILGA-TGGRL 104 (208)
T ss_pred HHhcCCeEEECCCCCCCCHHHHHHHHHHHcCCCEEEEEcc-CCCcH
Confidence 334455666553 359999999999999999999987 67788
No 66
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.13 E-value=2.1e+02 Score=22.69 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred hhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEec
Q 014311 156 PPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGV 200 (427)
Q Consensus 156 ~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~ 200 (427)
..-+..++..|+.-|+.+.-- ......|+++||+|+.+.
T Consensus 51 ~~~~~~l~~~~v~~vi~~~iG------~~a~~~l~~~gI~v~~~~ 89 (102)
T cd00562 51 KLAARLLALEGCDAVLVGGIG------GPAAAKLEAAGIKPIKAA 89 (102)
T ss_pred hHHHHHHHHCCCcEEEEcccC------ccHHHHHHHcCCEEEEcC
Confidence 456777888899988887633 346788999999998754
No 67
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=1.1e+02 Score=26.31 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=30.8
Q ss_pred CChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEec
Q 014311 154 RTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGV 200 (427)
Q Consensus 154 ~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~ 200 (427)
+-.+=+..|++.|+.-|+.+.-- .+....|+++||+|+.+-
T Consensus 53 ~G~~~a~~l~~~gvdvvi~~~iG------~~a~~~l~~~GIkv~~~~ 93 (121)
T COG1433 53 AGIRIAELLVDEGVDVVIASNIG------PNAYNALKAAGIKVYVAP 93 (121)
T ss_pred chHHHHHHHHHcCCCEEEECccC------HHHHHHHHHcCcEEEecC
Confidence 33467888899999988776543 347888999999998853
No 68
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=26.23 E-value=1.8e+02 Score=28.45 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=39.4
Q ss_pred ccccCCcEEEEe--C-CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEee
Q 014311 322 DMGTKGIETVNL--H-QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPV 387 (427)
Q Consensus 322 ~l~~~~v~~i~~--~-~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~ 387 (427)
.+++.|+++... . ..|..++.+++.+.+...|++.| |=|++.+++..+++.+--...-|-+.|.
T Consensus 22 ~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~G--GDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 22 DLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGG--GDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEc--CChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 455666665432 2 47888888888878887777775 6788866666666543111223455553
No 69
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=24.87 E-value=1.4e+02 Score=30.82 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=8.6
Q ss_pred CEEEEcCCCC
Q 014311 140 ATAYVSLEPC 149 (427)
Q Consensus 140 ~tlY~t~ePC 149 (427)
..||+|.-||
T Consensus 118 lhlYiS~~PC 127 (374)
T smart00552 118 FHLYISTLPC 127 (374)
T ss_pred EEEEeccCCc
Confidence 5689999999
No 70
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=24.24 E-value=1.2e+02 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=13.2
Q ss_pred EEEEEEeCCeEEEEEecC
Q 014311 101 VGCVIVKDGKIVGEGFHP 118 (427)
Q Consensus 101 vGaviv~~g~ii~~g~n~ 118 (427)
..++|.+||+|.+.|.|.
T Consensus 10 ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 10 HTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp EEEEEE-TTEEEEEE--T
T ss_pred EEEEEEcCCCEEEEcCCc
Confidence 678888899999999885
No 71
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=23.97 E-value=2.7e+02 Score=23.43 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHC-CC-CeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeC
Q 014311 334 HQLNLKAVLDYCYSH-GF-CSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNG 390 (427)
Q Consensus 334 ~~~dl~~~l~~L~~~-g~-~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG 390 (427)
..-+....+.+..+. .. ..|++.| |=|++..++..+++.+.-+...+.+.| .|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~ivv~G--GDGTl~~vv~~l~~~~~~~~~~l~iiP--~G 91 (130)
T PF00781_consen 37 ESAGHAEALARILALDDYPDVIVVVG--GDGTLNEVVNGLMGSDREDKPPLGIIP--AG 91 (130)
T ss_dssp SSTTHHHHHHHHHHHTTS-SEEEEEE--SHHHHHHHHHHHCTSTSSS--EEEEEE---S
T ss_pred eccchHHHHHHHHhhccCccEEEEEc--CccHHHHHHHHHhhcCCCccceEEEec--CC
Confidence 344566666654443 44 5666665 678887778888777766666677777 46
No 72
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.61 E-value=4e+02 Score=23.12 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=43.0
Q ss_pred cccccCCcEEEEeC-CCCHHHHHHHHHHCCCCeEEEEecCCcccH---HHHHHHHHHCCCccEEEEEEEeeEeCC
Q 014311 321 PDMGTKGIETVNLH-QLNLKAVLDYCYSHGFCSVLVDLRGNYGDL---EMLLKEGIEQNLLQKIVVEVLPVWNGS 391 (427)
Q Consensus 321 ~~l~~~~v~~i~~~-~~dl~~~l~~L~~~g~~~IlveGG~GGg~L---~~l~~sfl~~gLvDEl~l~i~P~llG~ 391 (427)
..|+..|++++.++ .+.++++++...+.+..=|.+-+ --|..+ ..+...+-++|+=| .|+++||
T Consensus 21 ~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~-L~t~~~~~~~~~~~~l~~~gl~~------v~vivGG 88 (128)
T cd02072 21 HAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSS-LYGHGEIDCKGLREKCDEAGLKD------ILLYVGG 88 (128)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec-cccCCHHHHHHHHHHHHHCCCCC------CeEEEEC
Confidence 35677899999998 68889999998888776666642 113333 45555555566633 4677784
No 73
>PLN02891 IMP cyclohydrolase
Probab=23.46 E-value=1.8e+02 Score=31.40 Aligned_cols=86 Identities=22% Similarity=0.326 Sum_probs=61.8
Q ss_pred EEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEc-CCCCCCCCCCh--hhHHHHHhcCccEEEEeecCCC
Q 014311 102 GCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVS-LEPCNHYGRTP--PCTEALIKAKVKKVVVGMLDPN 178 (427)
Q Consensus 102 Gaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t-~ePC~~~g~t~--~C~~ai~~~gi~~vv~~~~d~~ 178 (427)
.-|+++||+.|+.|.-+.. ..+|-..|+.+|+..++|+.|=.- ..|= + -|.....++||+-||- |-
T Consensus 450 AIV~akd~~tvGIGaGQ~s-RVda~~iA~~kA~~~~~G~vlASDAFFPF------~~~D~ve~aa~~Gv~aIIQ----PG 518 (547)
T PLN02891 450 AIVVAKNNRMLGMGSGQPN-RVESLRIALEKAGEEAKGAALASDAFFPF------AWNDAVEEACQAGVKVIAE----PG 518 (547)
T ss_pred eEEEEeCCeEEEecCCCcc-HHHHHHHHHHHhccccCCeEEEecccCCC------CCCccHHHHHHhCCEEEEC----CC
Confidence 4566679999999885544 446666799999888899988764 4566 5 8999999999998885 22
Q ss_pred CCC-CchhHHHHhhCCcEEEE
Q 014311 179 PIV-NSKGLERLRDAGIDVTV 198 (427)
Q Consensus 179 ~~~-~~~~~~~l~~~gi~V~~ 198 (427)
... ....++...++||..+.
T Consensus 519 GSiRD~evI~aane~giaMvf 539 (547)
T PLN02891 519 GSMRDQDAIDCCNKYGVALLF 539 (547)
T ss_pred CCCCcHHHHHHHHHhCCEEEE
Confidence 111 23466777777876543
No 74
>COG3911 Predicted ATPase [General function prediction only]
Probab=23.24 E-value=84 Score=28.49 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=21.7
Q ss_pred CeEEEEecCCcccHHHHHHHHHHCCCcc
Q 014311 351 CSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378 (427)
Q Consensus 351 ~~IlveGG~GGg~L~~l~~sfl~~gLvD 378 (427)
+...+.||||+|+- +|+.+|-++|..-
T Consensus 10 ~~fIltGgpGaGKT-tLL~aLa~~Gfat 36 (183)
T COG3911 10 KRFILTGGPGAGKT-TLLAALARAGFAT 36 (183)
T ss_pred eEEEEeCCCCCcHH-HHHHHHHHcCcee
Confidence 45677789999986 8899999999753
No 75
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=22.55 E-value=1.4e+02 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHCCCCeEEEEecCCcccH
Q 014311 336 LNLKAVLDYCYSHGFCSVLVDLRGNYGDL 364 (427)
Q Consensus 336 ~dl~~~l~~L~~~g~~~IlveGG~GGg~L 364 (427)
-|...+++.+.+++.++|+|.|+ -||++
T Consensus 73 TD~e~Al~~~~~~~~~~i~i~Ga-~GgR~ 100 (203)
T TIGR01378 73 TDLELALKYALERGADEITILGA-TGGRL 100 (203)
T ss_pred CHHHHHHHHHHHCCCCEEEEEcC-CCCcH
Confidence 48999999999999999999987 67787
No 76
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.45 E-value=90 Score=25.54 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=37.7
Q ss_pred CceEEEEecCCC----CCccccccCCcEEEEeCC--CCHHHHHHHHHH-CCCCeEEEEecCCcccHHHHHHHHHHCCC
Q 014311 306 SSKVIVFTDGEI----TVEPDMGTKGIETVNLHQ--LNLKAVLDYCYS-HGFCSVLVDLRGNYGDLEMLLKEGIEQNL 376 (427)
Q Consensus 306 ~~~~~v~t~~~~----~~~~~l~~~~v~~i~~~~--~dl~~~l~~L~~-~g~~~IlveGG~GGg~L~~l~~sfl~~gL 376 (427)
..+++++|.+.. ++...|+..|+.+-. ++ -....+.+.|++ .+.++|++.| . +.+...|-++|+
T Consensus 30 g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~~~~v~vlG---~---~~l~~~l~~~G~ 100 (101)
T PF13344_consen 30 GKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKGGKKVYVLG---S---DGLREELREAGF 100 (101)
T ss_dssp TSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTTSSEEEEES-------HHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCCCCEEEEEc---C---HHHHHHHHHcCC
Confidence 467777777653 245566677776322 21 234556677777 5999999994 3 344666666653
No 77
>PRK13054 lipid kinase; Reviewed
Probab=21.36 E-value=2.6e+02 Score=27.45 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=38.1
Q ss_pred ccccCCcEEEEeC---CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEe
Q 014311 322 DMGTKGIETVNLH---QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLP 386 (427)
Q Consensus 322 ~l~~~~v~~i~~~---~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P 386 (427)
.+.+.++++.... ..+..++.+++.+.+...|++.| |=|++..++..+++.+.-.+.-|-+.|
T Consensus 26 ~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~G--GDGTl~evv~~l~~~~~~~~~~lgiiP 91 (300)
T PRK13054 26 LLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGG--GDGTINEVATALAQLEGDARPALGILP 91 (300)
T ss_pred HHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEEC--CccHHHHHHHHHHhhccCCCCcEEEEe
Confidence 4556666654332 36788888888777877777664 678886666666654311123444444
No 78
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.03 E-value=1.5e+02 Score=28.64 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.6
Q ss_pred CChhhHHHHHhcCccEEEEeec
Q 014311 154 RTPPCTEALIKAKVKKVVVGML 175 (427)
Q Consensus 154 ~t~~C~~ai~~~gi~~vv~~~~ 175 (427)
|+..|+.+++++|+.||++|+.
T Consensus 85 Rs~~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 85 RSLEDVEALLDAGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHCCCCEEEEecc
Confidence 8889999999999999999985
No 79
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=20.58 E-value=1.7e+02 Score=27.89 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=57.3
Q ss_pred cCCCEEEEc--CCCCCCCCCChhhH--HHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEec----ccchhhcc
Q 014311 137 AEGATAYVS--LEPCNHYGRTPPCT--EALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGV----EDELCKRL 208 (427)
Q Consensus 137 ~~~~tlY~t--~ePC~~~g~t~~C~--~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~----~~~e~~~l 208 (427)
+.+++|+++ +-|= .... ..+..+|++-|+.+..+|+++....-.+.+++.|+++...- |.+.....
T Consensus 49 i~~~Dl~I~y~lHPD------l~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~ 122 (217)
T PF02593_consen 49 IPEADLLIAYGLHPD------LTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQ 122 (217)
T ss_pred CCCCCEEEEeccCch------hHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChh
Confidence 567777765 6665 2221 12223899999999988884322233466778899988731 22223344
Q ss_pred ccceeeeeecCcceEEEEEeeccCceee
Q 014311 209 NEAFIHRIVTGKPFATLRYTLSVNGHVL 236 (427)
Q Consensus 209 ~~~f~~r~~~~rP~V~~k~A~SLDG~Ia 236 (427)
.+.|... -++|-+.+++- ||+|.
T Consensus 123 i~~F~~~--fGkP~~ei~v~---~~~I~ 145 (217)
T PF02593_consen 123 IDEFAEY--FGKPKVEIEVE---NGKIK 145 (217)
T ss_pred HHHHHHH--hCCceEEEEec---CCcEE
Confidence 5556665 69999988776 88885
No 80
>PRK13337 putative lipid kinase; Reviewed
Probab=20.35 E-value=2.5e+02 Score=27.58 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=37.6
Q ss_pred ccccCCcEEEEe---CCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEe
Q 014311 322 DMGTKGIETVNL---HQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLP 386 (427)
Q Consensus 322 ~l~~~~v~~i~~---~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P 386 (427)
.+.+.++++... ...|..++.+++.+.+...|++.| |=|++.+++..++..+ +..-|-+.|
T Consensus 27 ~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~G--GDGTl~~vv~gl~~~~--~~~~lgiiP 90 (304)
T PRK13337 27 KLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAG--GDGTLNEVVNGIAEKE--NRPKLGIIP 90 (304)
T ss_pred HHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEc--CCCHHHHHHHHHhhCC--CCCcEEEEC
Confidence 355566664432 257888888888878877777765 6777755566665432 233444444
Done!