Query 014311
Match_columns 427
No_of_seqs 249 out of 1858
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g6v_A Riboflavin biosynthesis 100.0 3.1E-79 1.1E-83 625.5 33.0 342 75-427 28-393 (402)
2 2b3z_A Riboflavin biosynthesis 100.0 1.7E-78 5.7E-83 615.1 33.7 345 75-426 12-369 (373)
3 2hxv_A Diaminohydroxyphosphori 100.0 2E-75 6.9E-80 589.9 35.0 333 76-426 13-354 (360)
4 2azn_A HTP reductase, putative 100.0 3.7E-36 1.3E-40 283.3 22.8 199 218-426 1-215 (219)
5 3dh1_A TRNA-specific adenosine 100.0 3.8E-35 1.3E-39 269.6 10.2 143 74-224 23-186 (189)
6 2nx8_A TRNA-specific adenosine 100.0 1.7E-35 5.7E-40 270.1 7.2 141 74-222 13-166 (179)
7 2b3j_A TRNA adenosine deaminas 100.0 2.6E-34 9E-39 257.9 9.2 138 75-220 5-155 (159)
8 2p4g_A Hypothetical protein; p 100.0 1.5E-33 5E-38 274.0 13.9 213 204-426 18-258 (270)
9 1z3a_A TRNA-specific adenosine 100.0 6.5E-34 2.2E-38 257.3 9.5 138 75-220 7-157 (168)
10 2g84_A Cytidine and deoxycytid 100.0 1.4E-33 4.8E-38 261.4 9.0 135 74-216 25-183 (197)
11 2a8n_A Cytidine and deoxycytid 100.0 5.4E-33 1.8E-37 245.5 11.2 129 76-212 3-144 (144)
12 1wwr_A TRNA adenosine deaminas 100.0 8.2E-33 2.8E-37 250.4 8.8 136 74-218 20-168 (171)
13 1wkq_A Guanine deaminase; doma 100.0 1.9E-32 6.6E-37 246.4 7.0 139 75-222 9-164 (164)
14 1p6o_A Cytosine deaminase; hyd 100.0 1.1E-31 3.8E-36 241.1 11.6 131 74-216 11-151 (161)
15 2w4l_A DCMP deaminse, deoxycyt 100.0 8.2E-31 2.8E-35 238.9 11.8 132 72-216 8-167 (178)
16 1vq2_A DCMP deaminase, deoxycy 100.0 9.8E-30 3.3E-34 235.2 13.8 122 76-209 2-183 (193)
17 2hvw_A Deoxycytidylate deamina 100.0 1.9E-29 6.3E-34 230.7 11.4 119 73-203 38-178 (184)
18 3ky8_A Putative riboflavin bio 99.9 9.5E-26 3.3E-30 209.1 19.3 165 218-426 17-192 (197)
19 2gd9_A Hypothetical protein YY 99.9 8.1E-27 2.8E-31 214.5 10.4 177 217-426 5-185 (189)
20 3jtw_A Dihydrofolate reductase 99.9 1.4E-24 4.9E-29 198.0 16.8 162 222-426 5-175 (178)
21 2xw7_A Dihydrofolate reductase 99.9 5E-24 1.7E-28 194.1 15.7 160 219-426 2-171 (178)
22 3g8q_A Predicted RNA-binding p 99.9 4.2E-24 1.4E-28 197.1 11.8 88 95-198 18-105 (278)
23 1cz3_A Dihydrofolate reductase 99.9 2E-22 6.8E-27 181.9 16.4 155 222-426 2-161 (168)
24 2nyt_A Probable C->U-editing e 99.8 1.1E-20 3.6E-25 173.3 8.8 119 97-226 31-172 (190)
25 3kgy_A Bifunctional deaminase- 99.7 2E-17 7E-22 156.2 16.5 168 219-426 19-228 (231)
26 1vdr_A DHFR, dihydrofolate red 99.6 9.1E-15 3.1E-19 131.0 16.8 148 223-426 3-155 (162)
27 1zdr_A Dihydrofolate reductase 99.6 4.2E-14 1.4E-18 127.0 16.9 148 223-426 2-158 (164)
28 3ix9_A Dihydrofolate reductase 99.5 3.2E-13 1.1E-17 124.0 17.5 150 222-426 24-183 (190)
29 1aoe_A DHFR, dihydrofolate red 99.5 2.3E-14 7.8E-19 132.0 8.3 130 219-391 2-141 (192)
30 1kmv_A DHFR, dihydrofolate red 99.5 1.5E-13 5E-18 125.9 11.9 143 223-414 4-161 (186)
31 3cse_A Dihydrofolate reductase 99.4 2E-13 6.9E-18 128.8 9.3 135 219-395 2-151 (227)
32 2w3w_A Dihydrofolate reductase 99.4 1.3E-12 4.4E-17 117.6 13.8 131 219-398 2-137 (167)
33 2w9h_A DHFR, dihydrofolate red 99.4 1.4E-12 4.9E-17 116.4 12.7 144 223-426 3-155 (159)
34 3dfr_A Dihydrofolate reductase 99.3 1E-11 3.6E-16 111.2 13.6 139 224-416 2-143 (162)
35 3s9u_A Dihydrofolate reductase 99.3 6.9E-12 2.4E-16 112.6 12.1 140 222-418 5-147 (165)
36 3tq8_A Dihydrofolate reductase 99.3 2.3E-11 8E-16 110.3 14.6 140 222-418 2-144 (178)
37 3nzb_X Dihydrofolate reductase 99.3 8.7E-12 3E-16 115.9 12.1 135 219-398 3-157 (206)
38 3ia4_A Dihydrofolate reductase 99.3 2.4E-11 8.3E-16 108.7 12.3 139 223-418 3-144 (162)
39 1df7_A DHFR, dihydrofolate red 99.2 4.8E-11 1.6E-15 106.5 11.3 123 223-398 2-129 (159)
40 3dau_A Dihydrofolate reductase 99.2 1E-10 3.5E-15 104.3 10.9 138 223-418 2-142 (159)
41 1uwz_A Cytidine deaminase; CDD 99.1 1.2E-10 4.3E-15 101.1 9.3 82 77-166 3-97 (136)
42 3hj3_A Chain A, crystal struct 99.1 1.1E-10 3.9E-15 121.3 10.4 145 219-413 3-158 (521)
43 3nrr_A Dihydrofolate reductase 99.1 3.1E-10 1E-14 118.0 12.2 143 219-413 11-171 (515)
44 1j3k_A Bifunctional dihydrofol 99.1 7E-10 2.4E-14 107.2 12.8 78 337-426 145-226 (280)
45 2fr5_A Cytidine deaminase; tet 99.0 1.1E-09 3.7E-14 96.1 10.4 84 75-166 13-110 (146)
46 2z3g_A Blasticidin-S deaminase 99.0 3E-09 1E-13 91.7 10.9 84 74-166 4-99 (130)
47 2bl9_A Dihydrofolate reductase 98.9 1.4E-08 4.8E-13 96.0 13.4 67 337-415 154-220 (238)
48 3rg9_A Bifunctional dihydrofol 98.8 1.8E-08 6.3E-13 95.4 10.0 140 218-390 24-192 (240)
49 1juv_A DHFR, dihydrofolate red 98.7 4.3E-09 1.5E-13 96.7 3.8 134 223-397 2-160 (193)
50 3b8f_A Putative blasticidin S 98.5 4.5E-07 1.6E-11 79.1 9.4 87 76-172 3-106 (142)
51 1r5t_A Cytidine deaminase; zin 98.2 5.3E-06 1.8E-10 72.3 10.1 84 75-166 9-107 (142)
52 3irm_A Bifunctional dihydrofol 98.2 3.9E-06 1.3E-10 87.4 10.7 140 218-390 18-186 (521)
53 3r2n_A Cytidine deaminase; str 98.2 4.7E-06 1.6E-10 72.2 8.4 90 76-173 9-111 (138)
54 2d30_A Cytidine deaminase; pur 98.1 8.5E-06 2.9E-10 70.8 9.3 82 77-166 12-106 (141)
55 3qg2_A Bifunctional dihydrofol 98.1 1.2E-05 4E-10 84.7 10.0 53 337-397 145-197 (608)
56 1ctt_A Cytidine deaminase; hyd 97.8 9.4E-05 3.2E-09 71.8 9.8 83 77-166 49-140 (294)
57 3mpz_A Cytidine deaminase; ssg 97.5 0.00023 7.7E-09 62.3 7.3 83 76-166 24-119 (150)
58 1ctt_A Cytidine deaminase; hyd 97.3 0.00068 2.3E-08 65.8 8.4 84 76-167 187-285 (294)
59 3oj6_A Blasticidin-S deaminase 97.0 0.005 1.7E-07 54.2 10.6 85 72-166 26-123 (158)
60 3dmo_A Cytidine deaminase; str 96.6 0.012 4.1E-07 50.7 9.8 83 76-166 10-107 (138)
61 4eg2_A Cytidine deaminase; UMP 95.9 0.026 8.8E-07 54.6 9.3 84 77-167 52-144 (298)
62 3v4k_A DNA DC->DU-editing enzy 94.4 0.039 1.3E-06 50.3 4.8 66 122-198 78-160 (203)
63 4eg2_A Cytidine deaminase; UMP 92.6 0.34 1.2E-05 46.8 8.4 81 78-166 193-288 (298)
64 3vow_A Probable DNA DC->DU-edi 90.0 0.79 2.7E-05 41.2 7.5 95 98-198 31-147 (190)
65 3zzm_A Bifunctional purine bio 45.4 48 0.0016 34.1 7.6 86 102-198 428-515 (523)
66 1zcz_A Bifunctional purine bio 35.3 91 0.0031 31.5 7.6 85 103-198 370-456 (464)
67 4ehi_A Bifunctional purine bio 28.4 1.1E+02 0.0037 31.6 7.0 86 102-198 436-526 (534)
68 3rrl_A Succinyl-COA:3-ketoacid 25.4 95 0.0032 28.4 5.5 82 106-198 18-100 (235)
69 2hql_A Hypothetical protein Mg 22.2 3.5 0.00012 32.2 -4.1 20 357-380 1-20 (110)
No 1
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00 E-value=3.1e-79 Score=625.50 Aligned_cols=342 Identities=35% Similarity=0.506 Sum_probs=298.6
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCC
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGR 154 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~ 154 (427)
.+|++||++|+++|+++.+.++||++||||||+||+||++|+|...+.+|||++||++|++.++|||||||+|||+|+||
T Consensus 28 ~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~Ai~~a~~~~~g~tlyvt~ePC~h~G~ 107 (402)
T 2g6v_A 28 GQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGR 107 (402)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHHGGGGGSSCEEESSCCC-----
T ss_pred HHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCCCCccHHHHHHHHHhhHhcCCeEEEEeCCCcCCCCC
Confidence 47999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccCce
Q 014311 155 TPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGH 234 (427)
Q Consensus 155 t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLDG~ 234 (427)
||||+++|+|+||+||||+..||++.+.|+|+++|+++||+|..|++++||.++++.|+++.+++||||++++|+|||||
T Consensus 108 tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~~k~A~SLDG~ 187 (402)
T 2g6v_A 108 TPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR 187 (402)
T ss_dssp --CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCCEEECTTTTHHHHHTHHHHHHHHSSSCEEEEEEEECTTCB
T ss_pred chHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCcEEEeCCcchhhHHHhhhhhhccccccchheeeeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCC-------------CCCCeEEEEccCCCCCC
Q 014311 235 VLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPD-------------ANQPFRIITVSNHASPI 296 (427)
Q Consensus 235 Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~-------------~~~P~~vVvd~~~~l~~ 296 (427)
||.++|.+.|++++ +++++|+.+||||+| +|+..|+|.|++|.+. .++|.+||+|+++++++
T Consensus 188 IA~~~G~s~Wit~~~~r~~~~~lra~~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~~~~~~~~~~P~rvVld~~~~lp~ 267 (402)
T 2g6v_A 188 TAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTP 267 (402)
T ss_dssp BCC---CCSCSSCHHHHHHHHHHHHHCSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSSCCGGGCCCCEEEEECTTCCCCT
T ss_pred CccCCCCcCCcCCHHHHHHHHHHHHhCCEEEECHHHHhhcCcccccccccccccccccccccccCCCeEEEECCCCCCCh
Confidence 99999999999764 588899999999999 8999999999998652 57999999999999999
Q ss_pred CCCccccCCCceEEEEecCCCCCccccccCCcEEEEeC----CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHH
Q 014311 297 RIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLH----QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGI 372 (427)
Q Consensus 297 ~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~----~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl 372 (427)
..++|+. ..|+||+++.. +...+ +.|++++.++ ++|+.+++++|+++|+++||||| | ++|+++|+
T Consensus 268 ~a~~~~~--~~~~iV~t~~~--~~~~l-~~gv~vi~~~~~~g~vdl~~~l~~L~~~g~~~vlVEG---G---~~L~~sfL 336 (402)
T 2g6v_A 268 VHRIVQQ--PGETWFARTQE--DSREW-PETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA---G---PTLAGALL 336 (402)
T ss_dssp TSGGGSS--SSCEEEEESSC--CCSCC-CTTEEEEECCEETTEECHHHHHHHHHHTTCCEEEECC---C---HHHHHHHH
T ss_pred hhHhhcC--CCCEEEEECCc--chhhh-cCCCEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEEE---h---HHHHHHHH
Confidence 9999864 56888888754 22334 6689998765 47999999999999999999994 5 46699999
Q ss_pred HCCCccEEEEEEEeeEeCCCCCCCCcc--ccccccccCeeeeeeEEecCcEEEEEeC
Q 014311 373 EQNLLQKIVVEVLPVWNGSDGGNPHTL--LNSLGKRLILKNLQPKMSSQSIVLEGYL 427 (427)
Q Consensus 373 ~~gLvDEl~l~i~P~llG~~g~~l~~~--~~~~~~~~~L~l~~~~~~g~di~~~~Y~ 427 (427)
++|||||++|+++|+++|++|.+++.+ +..+.++.+|++++++.+++|+++++|.
T Consensus 337 ~agLVDEl~l~iaP~llG~~G~~lf~~~~~~~l~~~~~L~l~~~~~~g~dv~~~~y~ 393 (402)
T 2g6v_A 337 QAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVG 393 (402)
T ss_dssp HHTCCCEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEEEEETTEEEEEEEC
T ss_pred HCCCccEEEEEEccEEeCCCCcCCCCCccccccccccccEEeEEEEECCcEEEEEEE
Confidence 999999999999999999768887532 3344678899999999999999999984
No 2
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=1.7e-78 Score=615.09 Aligned_cols=345 Identities=30% Similarity=0.506 Sum_probs=312.1
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCC
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGR 154 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~ 154 (427)
..|++||++|+++|+++.+.++||++||||||+||+||++|+|...+.+|||++||++|++.++|||||||+|||+||||
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~g~tlyvTlePC~~~G~ 91 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGK 91 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHHGGGGTTCEEEESSCCCCCCSS
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHhhHhcCCeEEEEeCCCccCcCC
Confidence 46999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccCce
Q 014311 155 TPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGH 234 (427)
Q Consensus 155 t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLDG~ 234 (427)
||||+++|+++||+||||+..||++.+.|.|+++|+++||+|+.|++++||.++++.||++.+++||||++++|+||||+
T Consensus 92 t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~ 171 (373)
T 2b3z_A 92 TPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGK 171 (373)
T ss_dssp SCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSB
T ss_pred ChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeEEEeCCcccccccccceeeeeccccchhheeeeeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCCCCCCC-CCCeEEEEccCCCCCCCCCccccCCCce
Q 014311 235 VLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPASQEPDA-NQPFRIITVSNHASPIRIPGLSEESSSK 308 (427)
Q Consensus 235 Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~-~~P~~vVvd~~~~l~~~~~l~~~~~~~~ 308 (427)
|+..+|.+.|++++ +++++|+.+|+||+| +|+..|+|.|++|++.+ ++|.+||+|++++++++.++|+. ...|
T Consensus 172 Ia~~~G~~~Wit~~~~~~~~~~lr~~~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rvVld~~~~lp~~a~~~~~-~~~~ 250 (373)
T 2b3z_A 172 IATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICD-QIAP 250 (373)
T ss_dssp SSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEEEECTTCCCCTTCHHHHS-CSSC
T ss_pred eeccCCCccccCCHHHHHHHHHHHHHCCEEEEChhhhhhcCCcccccCcCCCCCCeEEEEcCCCCCCCcchhhcC-CCCC
Confidence 99999999999754 577889999999999 89999999999998765 89999999999999998888853 2468
Q ss_pred EEEEecCCCC--CccccccCCcEEEEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEE
Q 014311 309 VIVFTDGEIT--VEPDMGTKGIETVNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEV 384 (427)
Q Consensus 309 ~~v~t~~~~~--~~~~l~~~~v~~i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i 384 (427)
+||+++...+ +...+...|++++.+. .+|+.++++.|+++|+++||||| | ++|+++|+++|||||+++++
T Consensus 251 ~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveG---G---~~l~~s~L~agLVDEl~l~i 324 (373)
T 2b3z_A 251 TWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEG---G---SAVHGSFVKEGCFQEIIFYF 324 (373)
T ss_dssp EEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEE---C---HHHHHHHHHHTCCSEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHCCCCEEEEEE---h---HHHHHHHHhCCCceEEEEEE
Confidence 8888876532 3345667799998764 48999999999999999999995 4 56699999999999999999
Q ss_pred EeeEeCCC-CCCCCc--cccccccccCeeeeeeEEecCcEEEEEe
Q 014311 385 LPVWNGSD-GGNPHT--LLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 385 ~P~llG~~-g~~l~~--~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
+|+++|++ |++++. ++..+.++.+|++++++.+++|+++.++
T Consensus 325 aP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~ 369 (373)
T 2b3z_A 325 APKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAK 369 (373)
T ss_dssp ESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEE
T ss_pred cceEecCCCCcCcccccccccccccccceEeEEEEECCcEEEEEE
Confidence 99999964 777753 2344567899999999999999876554
No 3
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00 E-value=2e-75 Score=589.92 Aligned_cols=333 Identities=32% Similarity=0.519 Sum_probs=297.0
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHH---hhhcCCCEEEEcCCCCCCC
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDA---GELAEGATAYVSLEPCNHY 152 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~---~~~~~~~tlY~t~ePC~~~ 152 (427)
+.++||++|+++|+++...++||++||||||+||+||++|+|...+.+|||++||++| +..++|||||||+|||+|+
T Consensus 13 ~~~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~ 92 (360)
T 2hxv_A 13 MYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHH 92 (360)
T ss_dssp HHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSC
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHhcCCCcCCcEEEEecCccccc
Confidence 4578999999999999988899999999999999999999999999999999999999 6778999999999999999
Q ss_pred CCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeeeecCcceEEEEEeeccC
Q 014311 153 GRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVN 232 (427)
Q Consensus 153 g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~~~rP~V~~k~A~SLD 232 (427)
||||||++||+++||+||||+..||++ +.|.|++.|+++||+|+.|++++||.++++.||++.+++||||++|+|+|||
T Consensus 93 g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLD 171 (360)
T 2hxv_A 93 GKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLD 171 (360)
T ss_dssp SSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETT
T ss_pred CCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcEEEECCccccchhccceeeeccccchhhheeehhhccC
Confidence 999999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCcccc---chHHHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCC-CCccccCCCc
Q 014311 233 GHVLDQLGEGVAES---GGYYSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIR-IPGLSEESSS 307 (427)
Q Consensus 233 G~Ia~~~g~~~wi~---~~~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~-~~l~~~~~~~ 307 (427)
||||.++|+++|++ ..+++++|+++||||+| +|+..|+|.|++|++.+.+|.+||+|+++++++. .++|+...
T Consensus 172 G~IA~~~G~s~Wit~~~~~~~~~lr~~~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvVld~~~~~p~~~~~~~~~~~-- 249 (360)
T 2hxv_A 172 GKIADHRGDSKWITDKLRFKVHEMRNIYSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVILDRKGVLSGKVFRVFEENA-- 249 (360)
T ss_dssp SEEECTTSCCTTSCSTTHHHHHHHHHHSSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEEECTTCTTTTCCCGGGSSSS--
T ss_pred CcccCCCCCcccCCHHHHHHHHHHHHHCCEEEECccchhhhCCcccccCCCCCCCeEEEECCCCCCChhHhHHhcCCC--
Confidence 99999999999997 23688999999999999 7999999999999877889999999999999998 88885422
Q ss_pred eEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEee
Q 014311 308 KVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPV 387 (427)
Q Consensus 308 ~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~ 387 (427)
++||+++...+ ... .|+++ .++.+|+.+++++|+++|+++||||| | ++|+++|+++| ||++++++|+
T Consensus 250 ~~iv~t~~~~~--~~~--~~v~v-~~~~~dl~~~l~~L~~~g~~~vlVeG---G---~~L~~sfL~ag--DEl~l~iaP~ 316 (360)
T 2hxv_A 250 RVIVFTESEEA--EYP--PHVEK-ALSDCSVESILRNLYERDIDSVLVEG---G---SKVFSEFLDHA--DVVFGFYSTK 316 (360)
T ss_dssp CEEEEESCSSC--CCC--TTSEE-EECCCCHHHHHHHHHHTTCCEEEECC---C---HHHHHHHGGGC--SEEEEEEESC
T ss_pred cEEEEECCCch--hhc--cCcEE-EcCCCCHHHHHHHHHhCCCCEEEEEe---c---HHHHHHHHHCC--CEEEEEEcce
Confidence 36777765433 111 47888 55458999999999999999999994 5 46699999999 9999999999
Q ss_pred EeCCCCCCCCcc-ccccccccCeeeeeeEEecCcEEEEEe
Q 014311 388 WNGSDGGNPHTL-LNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 388 llG~~g~~l~~~-~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
++| +|.+++.+ +..+.++.+|++++++.+++|+. ++|
T Consensus 317 llG-~G~~lf~~~~~~~~~~~~L~l~~~~~~g~dv~-l~y 354 (360)
T 2hxv_A 317 IFG-KGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFL-VEM 354 (360)
T ss_dssp CCS-SSEETTTTCCCCTTSCCCEEEEEEEEETTEEE-EEE
T ss_pred EEc-CCCcccccccccccccccceEeEEEEECCcEE-EEE
Confidence 999 45566422 23456788999999999999965 444
No 4
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=100.00 E-value=3.7e-36 Score=283.34 Aligned_cols=199 Identities=18% Similarity=0.235 Sum_probs=169.0
Q ss_pred cCcceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCC-CCCCCCCCeEEEEccC
Q 014311 218 TGKPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPAS-QEPDANQPFRIITVSN 291 (427)
Q Consensus 218 ~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~-r~~~~~~P~~vVvd~~ 291 (427)
.+||||++|+|+|||||||..+|.+ |++++ ++|++|+.+||||+| +|+..|+|.+++ |.+.+.+|++||+|++
T Consensus 1 ~~rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~~dailvG~~T~~~d~p~L~~~r~~~~~~P~~vV~d~~ 79 (219)
T 2azn_A 1 EKKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIVVDSK 79 (219)
T ss_dssp CCCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHTSSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEEEECTT
T ss_pred CCCCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHHCCEEEEChhehhhcCCcCccccccCCCCCEEEEECCC
Confidence 4799999999999999999999999 99764 588999999999999 899999999999 8766789999999999
Q ss_pred CCCCCCCCccccCCCceEEEEecCCCC--Cccccc---cCCcEEEEeC--CCCHHHHHHHHHHCCCCeEEEEecCCcccH
Q 014311 292 HASPIRIPGLSEESSSKVIVFTDGEIT--VEPDMG---TKGIETVNLH--QLNLKAVLDYCYSHGFCSVLVDLRGNYGDL 364 (427)
Q Consensus 292 ~~l~~~~~l~~~~~~~~~~v~t~~~~~--~~~~l~---~~~v~~i~~~--~~dl~~~l~~L~~~g~~~IlveGG~GGg~L 364 (427)
++++++.++|+. ..|+||+++...+ +...+. +.|++++.++ ++|+.+++++|+++|+++||||| |
T Consensus 80 ~~~~~~~~~~~~--~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~ilveG---G--- 151 (219)
T 2azn_A 80 LRVPLNARVLNK--DAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEG---G--- 151 (219)
T ss_dssp CCCCTTCGGGST--TSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHTTCCEEEEEE---C---
T ss_pred CCCCccchhhcC--CCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHcCCCEEEEee---C---
Confidence 999999999953 5688888876543 222345 6689999875 58999999999999999999995 4
Q ss_pred HHHHHHHHHCCCccEEEEEEEeeEeCCC-CCCCCcc--ccccccccCeeeeeeEEecCcEEEEEe
Q 014311 365 EMLLKEGIEQNLLQKIVVEVLPVWNGSD-GGNPHTL--LNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 365 ~~l~~sfl~~gLvDEl~l~i~P~llG~~-g~~l~~~--~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
++|+++|+++|||||++++++|+++|+. +++++.+ +..+.++.+|++++++.+++|++ ++|
T Consensus 152 ~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~~~~~v~-l~y 215 (219)
T 2azn_A 152 GTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIV-LEF 215 (219)
T ss_dssp HHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEEETTEEE-EEE
T ss_pred HHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEEECCeEE-EEE
Confidence 5669999999999999999999999963 6666532 34456789999999999999965 545
No 5
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=269.65 Aligned_cols=143 Identities=24% Similarity=0.374 Sum_probs=118.1
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecC----CCCCCcHHHHHHHHHhh-----------hcC
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHP----KAGQPHAEVFALRDAGE-----------LAE 138 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~ai~~~~~-----------~~~ 138 (427)
..+|++||++|+++|+++...+ ++|||||||+||+||++|+|. ..+++|||++||++|++ .++
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~--~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l~ 100 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENT--EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFE 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhhhCC--CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCcccccccC
Confidence 3468999999999999987654 689999999999999999997 68899999999999865 368
Q ss_pred CCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchh----HHHHhhCC--cEEEEecccchhhccccce
Q 014311 139 GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKG----LERLRDAG--IDVTVGVEDELCKRLNEAF 212 (427)
Q Consensus 139 ~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~----~~~l~~~g--i~V~~g~~~~e~~~l~~~f 212 (427)
|||||||+||| +||++||+|+||+|||||..||..+..|.. .+.|+..| |+|+.|++++||.+|++.|
T Consensus 101 g~tLYvTlEPC------~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~F 174 (189)
T 3dh1_A 101 HTVLYVTVEPC------IMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTF 174 (189)
T ss_dssp TEEEEEEECCB------HHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHH
T ss_pred CeEEEEeCCCh------HHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHH
Confidence 99999999999 999999999999999999998876543332 23456677 9999999999999999999
Q ss_pred eeeeecCcceEE
Q 014311 213 IHRIVTGKPFAT 224 (427)
Q Consensus 213 ~~r~~~~rP~V~ 224 (427)
|.+.+.++|.-.
T Consensus 175 f~~~~~~~P~~~ 186 (189)
T 3dh1_A 175 YKQENPNAPKSK 186 (189)
T ss_dssp TCC---------
T ss_pred HHHhcCCCCCCC
Confidence 999999998644
No 6
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=1.7e-35 Score=270.12 Aligned_cols=141 Identities=25% Similarity=0.447 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCC----CCCCcHHHHHHHHHhhh-----cCCCEEEE
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGEL-----AEGATAYV 144 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~-----~~~~tlY~ 144 (427)
..+|++||++|+++|+++... +++|||||||+||+||++|+|.. .++.|||++||++|++. ++|+||||
T Consensus 13 ~~~d~~~M~~Al~~A~~a~~~--g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 13 LEEQTYFMQEALKESEKSLQK--AEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcccc--CCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 467999999999999998865 47999999999999999999986 44899999999999875 78999999
Q ss_pred cCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhC----CcEEEEecccchhhccccceeeeeecCc
Q 014311 145 SLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDA----GIDVTVGVEDELCKRLNEAFIHRIVTGK 220 (427)
Q Consensus 145 t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~----gi~V~~g~~~~e~~~l~~~f~~r~~~~r 220 (427)
|+||| +||++||+|+||+||||+..||+++..|.+++.|++. +++|..|++++||.++++.||.+.++++
T Consensus 91 TlEPC------~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~ 164 (179)
T 2nx8_A 91 TIEPC------VMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERK 164 (179)
T ss_dssp EECCB------HHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc------HHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999 9999999999999999999999999888889988865 7999999999999999999999988877
Q ss_pred ce
Q 014311 221 PF 222 (427)
Q Consensus 221 P~ 222 (427)
|.
T Consensus 165 ~~ 166 (179)
T 2nx8_A 165 KI 166 (179)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 7
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=2.6e-34 Score=257.90 Aligned_cols=138 Identities=28% Similarity=0.481 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCC----CCCCcHHHHHHHHHhhh-----cCCCEEEEc
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGEL-----AEGATAYVS 145 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~-----~~~~tlY~t 145 (427)
.+|++||++|+++|+++... +++|||||||+||+||++|+|.. +++.|||++||++|++. ++++|||||
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~--~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQL--GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhhcC--CCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 46899999999999998765 57999999999999999999986 68999999999999763 789999999
Q ss_pred CCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhh----CCcEEEEecccchhhccccceeeeeecCc
Q 014311 146 LEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRD----AGIDVTVGVEDELCKRLNEAFIHRIVTGK 220 (427)
Q Consensus 146 ~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~V~~g~~~~e~~~l~~~f~~r~~~~r 220 (427)
+||| +||+++|+|+||+||||+..||+++..|.+++.|++ ++++|+.|++++||.++++.||.+.++++
T Consensus 83 ~EPC------~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 155 (159)
T 2b3j_A 83 LEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155 (159)
T ss_dssp ECCC------HHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC-
T ss_pred CCCc------HHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999 999999999999999999999999988888999887 79999999999999999999999876543
No 8
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.5e-33 Score=273.97 Aligned_cols=213 Identities=13% Similarity=0.060 Sum_probs=169.4
Q ss_pred hhhccccceeeeeecCcceEEEEEeeccCceeecCCCCCccccch----HHHHHhhccCEEEEc-cccccccCCCCC---
Q 014311 204 LCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESGG----YYSQLLQEYDAIILS-ASSTKKYSIPAS--- 275 (427)
Q Consensus 204 e~~~l~~~f~~r~~~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~----~~~~~r~~~DaiLvG-~T~~~d~p~l~~--- 275 (427)
+..+++. ++..+.++||||++|+|+||||| |..+|.+.|++++ ++|++|+.+||||+| +|+..|+|.+++
T Consensus 18 ~l~~~y~-~~~~~~~~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~~DaIlvG~~T~~~d~p~l~~~~~ 95 (270)
T 2p4g_A 18 TEQIVYG-ALPLTTINEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPH 95 (270)
T ss_dssp HHHHHHS-SCCTHHHHCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSCCCCH
T ss_pred hHHHHhc-ccccCCCCCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHHCCEEEEChHHhhhhCCccccccc
Confidence 3444554 22223479999999999999999 9999999999764 688999999999999 899999999887
Q ss_pred CCC-------CCCCCeEEEEccCCCCCCCCCccccCCCce-E--EEEecCCC-------CCccccccCCcEEEEeC--CC
Q 014311 276 QEP-------DANQPFRIITVSNHASPIRIPGLSEESSSK-V--IVFTDGEI-------TVEPDMGTKGIETVNLH--QL 336 (427)
Q Consensus 276 r~~-------~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~-~--~v~t~~~~-------~~~~~l~~~~v~~i~~~--~~ 336 (427)
|++ ..++|.+||+|+++++++..++|+. ...+ + ||+++... ++...+++.|++++.++ ++
T Consensus 96 r~~~~r~~~g~~~~p~~vV~d~~~~~p~~~~~~~~-~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~ 174 (270)
T 2p4g_A 96 GIKNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSP-DLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTN 174 (270)
T ss_dssp HHHHHHHHTTCCSSCEEEEECSSCCCCTTSGGGCT-TSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred cccccccccCCCCCCcEEEECCCCCCCccchhhcC-CCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCC
Confidence 321 2348999999999999999998853 2233 2 66665532 13345666799999876 58
Q ss_pred CHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEE
Q 014311 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKM 416 (427)
Q Consensus 337 dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~ 416 (427)
|+.+++++|+++|+++||||| | ++|+++|+++|||||++++++|+++|++|.+++.++ ....+.+|++++++.
T Consensus 175 dl~~~l~~L~~~g~~~vlvEG---G---~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~-~~~~~~~l~l~~~~~ 247 (270)
T 2p4g_A 175 PLKIAFDALHARRLKKISIEG---G---PSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKI-SDDSFTTRLVLEMLS 247 (270)
T ss_dssp HHHHHHHHHHTTTCCEEEEEE---C---HHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSC-TTSCCCCCEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEec---C---HHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCc-CcCcCcceEEEEEEE
Confidence 999999999999999999995 4 566999999999999999999999997688775331 145678999999998
Q ss_pred ec-CcEEEEEe
Q 014311 417 SS-QSIVLEGY 426 (427)
Q Consensus 417 ~g-~di~~~~Y 426 (427)
+. ++.++++|
T Consensus 248 ~~~~g~v~l~Y 258 (270)
T 2p4g_A 248 SSPNGLIFSRY 258 (270)
T ss_dssp ECTTCCEEEEE
T ss_pred eccCCEEEEEE
Confidence 86 67777777
No 9
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=6.5e-34 Score=257.28 Aligned_cols=138 Identities=29% Similarity=0.522 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCC----CCCCcHHHHHHHHHhhh-----cCCCEEEEc
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGEL-----AEGATAYVS 145 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~-----~~~~tlY~t 145 (427)
.+|++||++|+++|+++... +++|||||||+||+||++|+|.. +++.|||++||++|++. +.|+|||||
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~--~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYvT 84 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDE--REVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVT 84 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHhhhc--CCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEEc
Confidence 35899999999999998765 46899999999999999999985 45799999999999765 689999999
Q ss_pred CCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhC----CcEEEEecccchhhccccceeeeeecCc
Q 014311 146 LEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDA----GIDVTVGVEDELCKRLNEAFIHRIVTGK 220 (427)
Q Consensus 146 ~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~----gi~V~~g~~~~e~~~l~~~f~~r~~~~r 220 (427)
+||| +||+++|+|+||+||||+..||+++..|.+++.|++. +++|..|++++||.++++.||.+.++++
T Consensus 85 lEPC------~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 157 (168)
T 1z3a_A 85 LEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEI 157 (168)
T ss_dssp ECCC------HHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTC
T ss_pred CCCc------HHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999 9999999999999999999999999888888888876 7999999999999999999999886654
No 10
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=1.4e-33 Score=261.41 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=120.3
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-C-CeEEEEEecC----CCCCCcHHHHHHHHHhhh----------c
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-D-GKIVGEGFHP----KAGQPHAEVFALRDAGEL----------A 137 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~-g~ii~~g~n~----~~~~~HAE~~ai~~~~~~----------~ 137 (427)
..+|++||++|+++|+++. .+.+ .|||||||+ | |+||++|+|. ..++.|||++||++|+++ +
T Consensus 25 ~~~d~~~M~~Al~~A~~a~-~~~~-~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~ 102 (197)
T 2g84_A 25 LAAPEARMGYVLELVRANI-AADG-GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGL 102 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHH-HTTC-CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTS
T ss_pred CHHHHHHHHHHHHHHHhhh-hcCC-CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCc
Confidence 3469999999999999988 4433 579999998 8 9999999995 467899999999998765 2
Q ss_pred CCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCc--------hhHHHHhhCCcEEEEecccchhhccc
Q 014311 138 EGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNS--------KGLERLRDAGIDVTVGVEDELCKRLN 209 (427)
Q Consensus 138 ~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~--------~~~~~l~~~gi~V~~g~~~~e~~~l~ 209 (427)
+|+|||||+||| +||++||+|+||+|||||..||+.+..| .+++.|+++||+|+.|++++||.+++
T Consensus 103 ~g~tlYvTlEPC------~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll 176 (197)
T 2g84_A 103 PACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALL 176 (197)
T ss_dssp CCEEEEEEECCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHH
T ss_pred CCEEEEEeCCCC------HHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecCCHHHHHHHH
Confidence 579999999999 9999999999999999999999887665 67889999999999999999999999
Q ss_pred cceeeee
Q 014311 210 EAFIHRI 216 (427)
Q Consensus 210 ~~f~~r~ 216 (427)
+.||.+.
T Consensus 177 ~~f~~~~ 183 (197)
T 2g84_A 177 REYNACN 183 (197)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9999864
No 11
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.98 E-value=5.4e-33 Score=245.52 Aligned_cols=129 Identities=26% Similarity=0.408 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCC----CCCCcHHHHHHHHHhh-----hcCCCEEEEcC
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGE-----LAEGATAYVSL 146 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~-----~~~~~tlY~t~ 146 (427)
+|++||++|+++|+++... +++|||||||+||+||++|+|.. +.+.|||++||++|++ .++++|||+|+
T Consensus 3 ~d~~~m~~A~~~A~~a~~~--~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T~ 80 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGER--DEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTL 80 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhhcC--CCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEECC
Confidence 6899999999999998775 47999999999999999999986 4589999999999976 37899999999
Q ss_pred CCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhh----CCcEEEEecccchhhccccce
Q 014311 147 EPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRD----AGIDVTVGVEDELCKRLNEAF 212 (427)
Q Consensus 147 ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~V~~g~~~~e~~~l~~~f 212 (427)
||| +||+++|+|+||+||||+..||+.+..|.+++.+++ ++++|+.|++++||.++++.|
T Consensus 81 ePC------~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 81 EPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CCB------HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred CCh------HHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 999 999999999999999999999999988888999987 799999999999999999876
No 12
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.97 E-value=8.2e-33 Score=250.43 Aligned_cols=136 Identities=24% Similarity=0.412 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCC----CCCCcHHHHHHHHHhhh-----cCCCEEEE
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGEL-----AEGATAYV 144 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~~-----~~~~tlY~ 144 (427)
..+|++||++|+++|+++... +++|||||||+||+||++|+|.. +++.|||++||++|++. ++++||||
T Consensus 20 ~m~~~~~M~~A~~~A~~a~~~--~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 20 HMGKEYFLKVALREAKRAFEK--GEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCSHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred chhHHHHHHHHHHHHHhcccC--CCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 345899999999999998765 57999999999999999999986 45899999999999763 78999999
Q ss_pred cCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhh----CCcEEEEecccchhhccccceeeeeec
Q 014311 145 SLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRD----AGIDVTVGVEDELCKRLNEAFIHRIVT 218 (427)
Q Consensus 145 t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~V~~g~~~~e~~~l~~~f~~r~~~ 218 (427)
|+||| +||+++|+|+||+||||+..||+++..|.+++.|++ ++++|.. ++++||.++++.||.+.++
T Consensus 98 T~EPC------~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 98 TLEPC------IMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp SSCCB------HHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCh------HHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999988888888885 7999999 9999999999999987653
No 13
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.97 E-value=1.9e-32 Score=246.40 Aligned_cols=139 Identities=27% Similarity=0.337 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCC----CCCCcHHHHHHHHHhh-----hcCCCEEEEc
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPK----AGQPHAEVFALRDAGE-----LAEGATAYVS 145 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~-----~~~~~tlY~t 145 (427)
..|+.||++|+++|+++...+ +++|||||||+||+||++|+|.. .++.|||++||++|++ .++|+|||||
T Consensus 9 ~~~~~~M~~Al~~A~~a~~~g-~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 9 MNHETFLKRAVTLACEGVNAG-IGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-SSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 458999999999999998765 47999999999999999999985 4589999999999976 3789999999
Q ss_pred CCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCc----hhHHHH----hhCCcEEEEecccchhhccccceeeeee
Q 014311 146 LEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNS----KGLERL----RDAGIDVTVGVEDELCKRLNEAFIHRIV 217 (427)
Q Consensus 146 ~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~----~~~~~l----~~~gi~V~~g~~~~e~~~l~~~f~~r~~ 217 (427)
+||| +||+++|+|+||+||||+..||+.+..| ...+.+ ...+++| .|++++||.++++.||.+.
T Consensus 88 ~EPC------~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~- 159 (164)
T 1wkq_A 88 CEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFA- 159 (164)
T ss_dssp ECCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCT-
T ss_pred CCCh------HHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhcc-
Confidence 9999 9999999999999999999999876555 344543 3568888 6799999999999999765
Q ss_pred cCcce
Q 014311 218 TGKPF 222 (427)
Q Consensus 218 ~~rP~ 222 (427)
.+.+|
T Consensus 160 ~~~~y 164 (164)
T 1wkq_A 160 NKKEY 164 (164)
T ss_dssp TCCCC
T ss_pred CCCCC
Confidence 33443
No 14
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.97 E-value=1.1e-31 Score=241.10 Aligned_cols=131 Identities=31% Similarity=0.479 Sum_probs=118.6
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEE--eCCeEEEEEecCC----CCCCcHHHHHHHHHhh----hcCCCEEE
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIV--KDGKIVGEGFHPK----AGQPHAEVFALRDAGE----LAEGATAY 143 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv--~~g~ii~~g~n~~----~~~~HAE~~ai~~~~~----~~~~~tlY 143 (427)
+.+|++||++|+++|+++...+ ++||||||| +||+||++|+|.. .++.|||++||++|++ .++++|||
T Consensus 11 ~~~d~~~M~~A~~~A~~a~~~~--~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~~~~~~~~tlY 88 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEG--GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLY 88 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTT--SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHHHhhhccC--CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhCCccccccccc
Confidence 4679999999999999987653 689999999 6999999999985 4579999999999976 47999999
Q ss_pred EcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccchhhccccceeeee
Q 014311 144 VSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRI 216 (427)
Q Consensus 144 ~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~ 216 (427)
||+||| +||+++|+|+||+||||+..||+. |.+.+.|+++||+|.. ++++||.++++.||.+.
T Consensus 89 vT~EPC------~mC~~ai~~agi~rVv~g~~~~~~---g~~~~~l~~~gi~v~~-~~~~e~~~l~~~f~~~~ 151 (161)
T 1p6o_A 89 TTLSPC------DMCTGAIIMYGIPRCVVGENVNFK---SKGEKYLQTRGHEVVV-VDDERCKKIMKQFIDER 151 (161)
T ss_dssp EEECCC------HHHHHHHHHHTCCEEEEEESSSCC---CTHHHHHHHTTCEEEE-CCCHHHHHHHHHHHHHC
T ss_pred cCCCCC------HHHHHHHHHhCCCEEEEEecCCCC---ccHHHHHHhcCCEEEE-ecHHHHHHHHHHHHHhC
Confidence 999999 999999999999999999998874 4688999999999998 99999999999999764
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=238.92 Aligned_cols=132 Identities=25% Similarity=0.352 Sum_probs=112.8
Q ss_pred CCChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC--------------C---------CCcHHH
Q 014311 72 NNDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA--------------G---------QPHAEV 127 (427)
Q Consensus 72 ~~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~--------------~---------~~HAE~ 127 (427)
....||++||++|+++|+++. +|+++||||||+ ||+||++|+|..+ + +.|||+
T Consensus 8 ~~~~~d~~~M~~A~~~A~~s~---~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~ 84 (178)
T 2w4l_A 8 DYLEWPEYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAEL 84 (178)
T ss_dssp SCCCHHHHHHHHHHHHHTTCC---CSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHH
T ss_pred cccHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHH
Confidence 466789999999999999865 468999999994 9999999999864 2 379999
Q ss_pred HHHHHH-hhhcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeec---CCCCCCCchhHHHHhhCCcEEEEecccc
Q 014311 128 FALRDA-GELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGML---DPNPIVNSKGLERLRDAGIDVTVGVEDE 203 (427)
Q Consensus 128 ~ai~~~-~~~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~---d~~~~~~~~~~~~l~~~gi~V~~g~~~~ 203 (427)
+||++| +..++|+|||||+||| +||+++|+++||+||||+.. |+++. ..|+++|+++||+|.. +++
T Consensus 85 ~AI~~a~g~~~~g~tlYvTlePC------~~Ca~aIi~agI~rVVy~~~~~~d~~~~--~~~~~~L~~aGI~V~~--~~~ 154 (178)
T 2w4l_A 85 NAIMNKNLTDVKGCSMYVALFPC------NECAKLIIQAGIKEVIFMSDKYHDSDEA--TAARLLFNMAGVTFRK--FIP 154 (178)
T ss_dssp HHHHC----CCTTCEEEEEECCC------HHHHHHHHHTTCCEEEEEECTTTTSHHH--HHHHHHHHHHTCEEEE--CCC
T ss_pred HHHHHhcCCCccccEEEEeCCcH------HHHHHHHHHHCCCEEEEEeccCCCCcch--HHHHHHHHHCCCEEEE--ccH
Confidence 999985 5678999999999999 99999999999999999987 33322 2468999999999998 789
Q ss_pred hhhccccceeeee
Q 014311 204 LCKRLNEAFIHRI 216 (427)
Q Consensus 204 e~~~l~~~f~~r~ 216 (427)
|+.+++..|..+.
T Consensus 155 ~~~~l~~~f~~~~ 167 (178)
T 2w4l_A 155 KCSKIVIDFDSIN 167 (178)
T ss_dssp SCSEEEEEGGGC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998774
No 16
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.96 E-value=9.8e-30 Score=235.23 Aligned_cols=122 Identities=31% Similarity=0.444 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCCC----------------------------------
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG---------------------------------- 121 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~---------------------------------- 121 (427)
+|++||++|+++|+++. +|++|||||||+||+||++|+|..+.
T Consensus 2 ~d~~fM~~A~~~A~rs~---~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESK---CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSF 78 (193)
T ss_dssp CHHHHHHHHHHHHTTCC---CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC----------------
T ss_pred CHHHHHHHHHHHHHhcC---CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccc
Confidence 48999999999999975 46799999999999999999998762
Q ss_pred -----------------------CCcHHHHHHHHHhh---hcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeec
Q 014311 122 -----------------------QPHAEVFALRDAGE---LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGML 175 (427)
Q Consensus 122 -----------------------~~HAE~~ai~~~~~---~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~ 175 (427)
..||||+||.+|++ .++|+|||||+||| +||+++|+++||+||||+..
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC------~~Ca~aIi~aGI~rVvy~~~ 152 (193)
T 1vq2_A 79 GSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYCET 152 (193)
T ss_dssp ----CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCC------HHHHHHHHHHTCCEEEEEEC
T ss_pred ccccccccchhhccccccccCCCCCCHHHHHHHHHHhcCCCcCCeEEEEeCCCc------HHHHHHHHHhCCCEEEEecC
Confidence 46999999999854 57999999999999 99999999999999999965
Q ss_pred CCCCCCCchhHHHHhhCCcEEEEecccchhhccc
Q 014311 176 DPNPIVNSKGLERLRDAGIDVTVGVEDELCKRLN 209 (427)
Q Consensus 176 d~~~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~ 209 (427)
+|+ ..+.+.++|+++||+|+. +..+++.+++
T Consensus 153 ~~~--~~~~~~~~l~~aGI~v~~-~~~~~~~~~~ 183 (193)
T 1vq2_A 153 YDK--NKPGWDDILRNAGIEVFN-VPKKNLNKLN 183 (193)
T ss_dssp CTT--CCTTTTHHHHHTTCEEEE-CCGGGCCSSC
T ss_pred CCC--cchHHHHHHHHCCCEEEE-eCHHHHHHhc
Confidence 554 445567999999999998 8888887766
No 17
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.96 E-value=1.9e-29 Score=230.75 Aligned_cols=119 Identities=23% Similarity=0.344 Sum_probs=105.9
Q ss_pred CChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEeCCeEEEEEecCCC-------------------CCCcHHHHHHHHH
Q 014311 73 NDKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKA-------------------GQPHAEVFALRDA 133 (427)
Q Consensus 73 ~~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~-------------------~~~HAE~~ai~~~ 133 (427)
.+.+|++||++|+++|+++. +|++|||||||+||+||++|+|..+ .+.|||++||++|
T Consensus 38 ~~~~de~~M~~A~~~A~~s~---~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A 114 (184)
T 2hvw_A 38 RLSWQDYFMANAELISKRST---CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQC 114 (184)
T ss_dssp CCCHHHHHHHHHHHHGGGCC---CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHH
Confidence 45689999999999999964 5789999999999999999999863 2589999999998
Q ss_pred hh---hcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCCCchhHHHHhhCCcEEEEecccc
Q 014311 134 GE---LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDE 203 (427)
Q Consensus 134 ~~---~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~V~~g~~~~ 203 (427)
++ .++++|||||+||| +||+++|+|+||+||||+..||+.. .++++|+++||+|+.+.+++
T Consensus 115 ~~~g~~l~g~tlYvTlEPC------~mCa~aIi~agI~rVVy~~~~~~~~---~~~~~L~~aGIeV~~~~~~~ 178 (184)
T 2hvw_A 115 AKEGISANNTEIYVTHFPC------INCTKALLQAGVKKITYNTAYRIHP---FAIELMTQKEVEYVQHDVPR 178 (184)
T ss_dssp HHHTCCCTTEEEEEEECCC------HHHHHHHHHHTEEEEEEEECCSCCH---HHHHHHHHHTCEEEECCCCC
T ss_pred HHcCCCceeEEEEECCCCH------HHHHHHHHHHCCCeEEEEecCCCCH---HHHHHHHHCCCEEEEecchh
Confidence 64 57999999999999 9999999999999999999988753 35999999999999987655
No 18
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=9.5e-26 Score=209.14 Aligned_cols=165 Identities=13% Similarity=0.194 Sum_probs=128.4
Q ss_pred cCcceEEEEEeeccCceeecCCCCCccccch--------HHHHHhhccCEEEEc-cccccccCCCCCC--CCCCCCCeEE
Q 014311 218 TGKPFATLRYTLSVNGHVLDQLGEGVAESGG--------YYSQLLQEYDAIILS-ASSTKKYSIPASQ--EPDANQPFRI 286 (427)
Q Consensus 218 ~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~--------~~~~~r~~~DaiLvG-~T~~~d~p~l~~r--~~~~~~P~~v 286 (427)
++||+|++++|+||||+||.++|+..|+++. .++++++..|+|||| +|+. +.++.+ ++. .+|. +
T Consensus 17 ~~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~T~e---~~~~~~~~~P~-~~~~-i 91 (197)
T 3ky8_A 17 FQGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLD---MVLSFDCDWPY-SKPV-F 91 (197)
T ss_dssp TTTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHH---HHCCTTCCCCC-SSCE-E
T ss_pred cCCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHhCCEEEEcHHHhH---hHhhcCCCCCC-CCcE-E
Confidence 5999999999999999999999999998643 478899999999999 6763 233332 332 2343 6
Q ss_pred EEccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHH
Q 014311 287 ITVSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEM 366 (427)
Q Consensus 287 Vvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~ 366 (427)
|+|++....... . ..+++++ ..|+.++++.|+++++++|+|+| | ++
T Consensus 92 Vls~~~~~~~~~------~-------------------~~~~~~v---~~~l~~~l~~L~~~~~~~i~v~G---G---~~ 137 (197)
T 3ky8_A 92 VLSNTMTEVPQG------Y-------------------EDKVFLV---KGKLVDIIADLNAKGFNELYIDG---G---VT 137 (197)
T ss_dssp EECSSCCSCCTT------C-------------------TTTEEEE---CSCHHHHHHHHHHTTCCEEEEES---H---HH
T ss_pred EEeCCCCCCccc------c-------------------CCCEEEE---eCCHHHHHHHHHhCCCCeEEEEe---h---HH
Confidence 777765432110 0 0122222 24899999999999999999994 4 67
Q ss_pred HHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEe
Q 014311 367 LLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 367 l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
+ ++|+++|||||++++++|+++|+ |.++ |+.+.++.+|++++++.+++|+++++|
T Consensus 138 l-~~~l~~glvDel~l~~~P~~lG~-G~~~---f~~~~~~~~l~l~~~~~~~~g~v~l~Y 192 (197)
T 3ky8_A 138 I-QNFLKEDLIDEMVITRFPILLGG-GVPL---FGELESSLSFNVIKSEVVLDSLTQTTY 192 (197)
T ss_dssp H-HHHHHTTCCCEEEEEEESEECSS-SEES---CCCCSSCEEEEEEEEEEETTTEEEEEE
T ss_pred H-HHHHhCCCCCEEEEEEeeEEECC-CCcc---cCCCCcCcceEEEEEEEeCCCEEEEEE
Confidence 7 99999999999999999999994 7777 445566789999999999999999998
No 19
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=8.1e-27 Score=214.48 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=133.1
Q ss_pred ecCcceEEEEEeeccCceeecCCCCCccc-cch--HHHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCC
Q 014311 217 VTGKPFATLRYTLSVNGHVLDQLGEGVAE-SGG--YYSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNH 292 (427)
Q Consensus 217 ~~~rP~V~~k~A~SLDG~Ia~~~g~~~wi-~~~--~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~ 292 (427)
++++|+|++++|+|+||+|+..+|.+.|+ +++ .++++|+.+|+|||| +|+..+++. ++ +.+| |++
T Consensus 5 ~~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~dail~Gr~T~~~~~~~----~p-~~~P-----d~~- 73 (189)
T 2gd9_A 5 NLKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQIDTILYGRKSFDLWGQY----IP-KNED-----PDT- 73 (189)
T ss_dssp CCCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHTEEEEEEEHHHHHHHTTC--------------------
T ss_pred CCCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhcCCEEEEChHHHhhhhhc----CC-CCCC-----ccc-
Confidence 46899999999999999999999999998 533 588999999999999 788776543 22 2445 433
Q ss_pred CCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHH
Q 014311 293 ASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGI 372 (427)
Q Consensus 293 ~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl 372 (427)
+++..++++ ..+.+|+++.... ... +++++ ..|+.++++.|+++++++|+||| | ++|+++|+
T Consensus 74 -~~~~~~~~~---~~~~iV~t~~~~~----~~~-~~~~~---~~~l~~~l~~L~~~~~~~i~v~G---G---~~l~~~~l 135 (189)
T 2gd9_A 74 -EKELWKLVH---SKKKYVFSRTQNE----IDN-QAIFI---NDNILEEVNKLKKNPGKDIWLYG---G---ASLITTFI 135 (189)
T ss_dssp --CCHHHHHH---HSEEEEECCEEET----TTT-EEECC---HHHHHHHHHHHHHSCCSEEEEEE---C---HHHHHHHH
T ss_pred -cchhHHHhC---CCCEEEEeCCCCC----CCC-CeEEE---cCCHHHHHHHHHhCCCCeEEEEC---h---HHHHHHHH
Confidence 444444553 2477888764211 111 33332 46999999999999999999995 4 56699999
Q ss_pred HCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEe
Q 014311 373 EQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 373 ~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
++|||||++++++|+++|+ |.++ |+...+..+|++++++.+++|+++++|
T Consensus 136 ~~glvDel~l~~~P~~lG~-g~~~---f~~~~~~~~l~l~~~~~~~~~~~~l~y 185 (189)
T 2gd9_A 136 NLGLVDEFRLSIHPVVLGE-GKPL---FIDVKQRINLKMVNTRTFSSGVVQIVY 185 (189)
T ss_dssp HTTCCCEEEEEECSEECSS-SEES---SCSCCSCEECEEEEEEECTTSCEEEEE
T ss_pred HCCCceEEEEEEeCEEeCC-CCcc---CCCCCCCcceEEEEEEEcCCCEEEEEE
Confidence 9999999999999999994 6666 334456789999999999999997777
No 20
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.92 E-value=1.4e-24 Score=197.99 Aligned_cols=162 Identities=12% Similarity=0.144 Sum_probs=125.1
Q ss_pred eEEEEEeeccCceeecCCCCCccccc--------hHHHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCC
Q 014311 222 FATLRYTLSVNGHVLDQLGEGVAESG--------GYYSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNH 292 (427)
Q Consensus 222 ~V~~k~A~SLDG~Ia~~~g~~~wi~~--------~~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~ 292 (427)
.|++++|+||||+|+.++|++.|+++ .+++++++..|+|||| +|+..++|.+....+..+++..+|++++.
T Consensus 5 kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~T~~~~~p~~~~~~~p~~~~~~iV~s~~~ 84 (178)
T 3jtw_A 5 KVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYADRQTYIVTSHL 84 (178)
T ss_dssp CEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHHEEEEEEEHHHHHHHHHHTCSSSCTTTTSEEEEECSSC
T ss_pred EEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhcCCEEEEChHHHhhhhhccCCCCCCCCCCCEEEEeCCC
Confidence 48999999999999999999999854 2688999999999999 78887776543221112344556666554
Q ss_pred CCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHH
Q 014311 293 ASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGI 372 (427)
Q Consensus 293 ~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl 372 (427)
..+ ..+++++ ..|+.++++.|+++++++|+|+| | ++|+++|+
T Consensus 85 ~~~-----------------------------~~~~~~~---~~~l~~~l~~l~~~~~~~i~v~G---G---~~l~~~~l 126 (178)
T 3jtw_A 85 GED-----------------------------TDKIKYW---KQSPVELVKRIQKEKGKDVWIVG---G---AKIIDPLV 126 (178)
T ss_dssp CCC-----------------------------CSSEEEE---CSCHHHHHHHHHTSSCCEEEEEE---C---HHHHHHHH
T ss_pred CCC-----------------------------CCCEEEE---cCCHHHHHHHHHhCCCCEEEEEC---h---HHHHHHHH
Confidence 311 1122222 24899999999999999999995 4 56699999
Q ss_pred HCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEe
Q 014311 373 EQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 373 ~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
+++|+||++++++|+++| +|.++ |+....+.+|++++++.++ +.++++|
T Consensus 127 ~~~lvDel~l~~~p~~~G-~g~~~---f~~~~~~~~l~l~~~~~~~-~~v~l~Y 175 (178)
T 3jtw_A 127 QANLIDTYILTTVPIFLG-SGIRL---FDRLEEQVPVRLIDVYQKN-ELVYSIY 175 (178)
T ss_dssp HTTCCSEEEEEEESCCCC-SSEES---SSCCCSCCCEEEEEEEEET-TEEEEEE
T ss_pred HCCCceEEEEEEecEEEc-CCCcc---cCCCCcCcceEEeEEEEEC-CEEEEEE
Confidence 999999999999999999 47777 4455667899999999997 5566666
No 21
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.91 E-value=5e-24 Score=194.08 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=118.7
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccc--------hHHHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEc
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESG--------GYYSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITV 289 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~--------~~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd 289 (427)
++|+|++++|+|+||+|+..+|++.|+++ .+++++++.+|+|||| +|+..+++. ..++. ..| .+|++
T Consensus 2 ~mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~dailmGr~T~~~~~~~--~~~P~-~~~-~iV~s 77 (178)
T 2xw7_A 2 HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIETIGVLVMGASTYEWVVEH--GDWSY-DQP-AWVLT 77 (178)
T ss_dssp CSCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHTEEEEEEEHHHHHHHHHS--SCCCC-SSC-EEEEC
T ss_pred CCcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHhCCEEEECHHHHhhhhcC--CCCCC-CCC-EEEEe
Confidence 58999999999999999999999999853 2688999999999999 787776532 11211 233 45555
Q ss_pred cCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC-CCCeEEEEecCCcccHHHHH
Q 014311 290 SNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH-GFCSVLVDLRGNYGDLEMLL 368 (427)
Q Consensus 290 ~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~-g~~~IlveGG~GGg~L~~l~ 368 (427)
++. ++. ....+++++ ..|+.++++.|+++ ++++||||| | ++|+
T Consensus 78 ~~~-~~~--------------------------~~~~~~~~~---~~dl~~~l~~L~~~~~~~~v~v~G---G---~~l~ 121 (178)
T 2xw7_A 78 HRP-EIA--------------------------AESHPMQVF---SGDVAELHPELVAAAGGKDVWVVG---G---GDVA 121 (178)
T ss_dssp SCG-GGC--------------------------BTTBCCEEE---CSCHHHHHHHHHHHTTTSEEEEEE---C---HHHH
T ss_pred CCC-CCc--------------------------CCCCCEEEE---CCCHHHHHHHHHhccCCCcEEEEc---c---HHHH
Confidence 441 110 011233332 24999999999997 569999995 4 5669
Q ss_pred HHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEe
Q 014311 369 KEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 369 ~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
++|+++|||||++++++|+++| +|.++++ ... +|++++.+.+ ++.++++|
T Consensus 122 ~~~l~~gLvDel~l~~~P~~lG-~g~~~f~---~~~---~l~l~~~~~~-~~~v~l~y 171 (178)
T 2xw7_A 122 AQFVAADLIDEIIVSYAPCTLG-VGSRVLP---MRS---EWVLDDCARN-GDFVCARW 171 (178)
T ss_dssp HHHHHTTCCCEEEEEEESEECS-SSSBSSC---SCE---ECEEEEEEEE-TTEEEEEE
T ss_pred HHHHHCCCCeEEEEEEeceEec-CCCcCCC---CCC---ceEEEeEEEe-CCeEEEEE
Confidence 9999999999999999999999 4777743 222 8999999999 55555666
No 22
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.90 E-value=4.2e-24 Score=197.08 Aligned_cols=88 Identities=27% Similarity=0.362 Sum_probs=80.9
Q ss_pred CCCCCcEEEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCCChhhHHHHHhcCccEEEEee
Q 014311 95 TSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGM 174 (427)
Q Consensus 95 ~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~gi~~vv~~~ 174 (427)
+.|||+||||||+||+||+.|.+ +++|||++||+ +..++|||||||+||| +||++||+|+||+||||+.
T Consensus 18 t~PNPpVGAVIVkDGeIIA~Ge~---gTaHAEInAIr--g~~L~GaTLYVTLEPC------~MCAgAII~AGIkRVVYGa 86 (278)
T 3g8q_A 18 EIPKRTVTAALLEGGEIVAVEEA---DDEHAERKLVR--RHDVEGKVVFVTARPC------LYCARELAEAGVAGVVYLG 86 (278)
T ss_dssp HSCCSSCEEEEEETTEEEEEEEC---SSSCHHHHHHH--HSCCTTCEEEESSCCC------HHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCCEEEEEEECCEEEEecCC---CCCCHHHHHhC--CCCCCCcEEEEeCCch------HHHHHHHHHhCCCEEEEEe
Confidence 35899999999999999999944 89999999998 6678999999999999 9999999999999999999
Q ss_pred cCCCCCCCchhHHHHhhCCcEEEE
Q 014311 175 LDPNPIVNSKGLERLRDAGIDVTV 198 (427)
Q Consensus 175 ~d~~~~~~~~~~~~l~~~gi~V~~ 198 (427)
.+ .+.|.++|+++||+|+.
T Consensus 87 ~~-----~G~G~e~LreAGIEV~~ 105 (278)
T 3g8q_A 87 RG-----RGLGPYYLARSGVEVVE 105 (278)
T ss_dssp CS-----SCCHHHHHHTTTCEEEE
T ss_pred cC-----CChhHHHHHHCCCEEEE
Confidence 74 35689999999999998
No 23
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.89 E-value=2e-22 Score=181.93 Aligned_cols=155 Identities=13% Similarity=0.169 Sum_probs=118.9
Q ss_pred eEEEEEeeccCceeecCCCCCccccc---hHHHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCC
Q 014311 222 FATLRYTLSVNGHVLDQLGEGVAESG---GYYSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIR 297 (427)
Q Consensus 222 ~V~~k~A~SLDG~Ia~~~g~~~wi~~---~~~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~ 297 (427)
.|++++|+|+||+|+..+| .|+.. .+++++++.+|+|||| +|+.. ++ ++....|. +|+|++... .
T Consensus 2 kv~l~~A~slDG~Ia~~~~--~W~~~~~~~~~~~~~~~~dailmGr~T~~~----l~--~p~~~~~~-~V~s~~~~~-~- 70 (168)
T 1cz3_A 2 KVIFVLAMDVSGKIASSVE--SWSSFEDRKNFRKITTEIGNVVMGRITFEE----IG--RPLPERLN-VVLTRRPKT-S- 70 (168)
T ss_dssp EEEEEEEECTTCEEECSCT--TCSCHHHHHHHHHHHHHHTEEEEEHHHHHH----HC--SCCTTSEE-EEECSSCCC-C-
T ss_pred eEEEEEEEcCCCeEECCCC--CCCChHHHHHHHHHHHhCCEEEEChHHhhc----CC--CCCCCCeE-EEECCCCCc-c-
Confidence 4899999999999999888 89832 2578888999999999 67653 22 23234454 556665320 0
Q ss_pred CCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCc
Q 014311 298 IPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLL 377 (427)
Q Consensus 298 ~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLv 377 (427)
. ..+++++ ..|+.++++.|+++++++||||| | ++++++|+++||+
T Consensus 71 -----~---------------------~~~~~~~---~~~l~~~l~~l~~~~~~~i~v~G---G---~~l~~~~l~~~lv 115 (168)
T 1cz3_A 71 -----N---------------------NPSLVFF---NGSPADVVKFLEGKGYERVAVIG---G---KTVFTEFLREKLV 115 (168)
T ss_dssp -----S---------------------CTTEEEE---CSCHHHHHHHHHHTTCSEEEEEE---C---HHHHHHHHHTTCC
T ss_pred -----C---------------------CCCEEEE---eCCHHHHHHHHHhCCCCEEEEEC---C---HHHHHHHHhCCCC
Confidence 0 0122222 24899999999999999999995 4 5679999999999
Q ss_pred cEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecC-cEEEEEe
Q 014311 378 QKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQ-SIVLEGY 426 (427)
Q Consensus 378 DEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~-di~~~~Y 426 (427)
||++++++|+++| +|.++ |+.+.+..+|++++.+.+++ ++++++|
T Consensus 116 Del~l~~~p~~lG-~g~~~---f~~~~~~~~l~l~~~~~~~~~~~~~l~Y 161 (168)
T 1cz3_A 116 DELFVTVEPYVFG-KGIPF---FDEFEGYFPLKLLEMRRLNERGTLFLKY 161 (168)
T ss_dssp SEEEEEECSEEES-SCEES---SCCCSCEEEEEEEEEEECSSSCCEEEEE
T ss_pred CEEEEEEeceecC-CCCcC---CCCCCcccccEEeeeEEeCCCCEEEEEE
Confidence 9999999999999 46666 44555678999999999999 8888888
No 24
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.82 E-value=1.1e-20 Score=173.26 Aligned_cols=119 Identities=18% Similarity=0.306 Sum_probs=97.4
Q ss_pred CCCcEEEEEEe--C---CeEEEEEecCC-CCCCcHHHHHHHHHhh----hcC-CCEEEEcCCCCCCCCCChhhHHHHHhc
Q 014311 97 PNPMVGCVIVK--D---GKIVGEGFHPK-AGQPHAEVFALRDAGE----LAE-GATAYVSLEPCNHYGRTPPCTEALIKA 165 (427)
Q Consensus 97 ~~~~vGaviv~--~---g~ii~~g~n~~-~~~~HAE~~ai~~~~~----~~~-~~tlY~t~ePC~~~g~t~~C~~ai~~~ 165 (427)
.+..+.|..|+ + +.|+++|+|.. .++.|||++||++|+. .+. |+|||||+||| +||+++|+++
T Consensus 31 r~~tyLcy~v~~~~~~~~~ii~~G~~~~~~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC------~~Ca~aIi~a 104 (190)
T 2nyt_A 31 RNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPC------AACADRIIKT 104 (190)
T ss_pred CCceEEEEEEEecCCCCCCeEEEEECCCCCCCcCHHHHHHHHHHHhcCccccCCeEEEEEcChH------HHHHHHHHHh
Confidence 35679999997 3 56999999998 6999999999999875 234 99999999999 9999999999
Q ss_pred -----CccEEEEeecCCC---CCCCchhHHHHhhCCcEEEEecccchhhccccceeeeee-cCc---ceEEEE
Q 014311 166 -----KVKKVVVGMLDPN---PIVNSKGLERLRDAGIDVTVGVEDELCKRLNEAFIHRIV-TGK---PFATLR 226 (427)
Q Consensus 166 -----gi~~vv~~~~d~~---~~~~~~~~~~l~~~gi~V~~g~~~~e~~~l~~~f~~r~~-~~r---P~V~~k 226 (427)
||++|||+..|+. +.+ ..|+++|+++||+|.. +..+ +++..|+..+. .++ ||+..+
T Consensus 105 l~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~--~~~~--e~~~~w~~fv~~~~~~~~pf~~W~ 172 (190)
T 2nyt_A 105 LSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI--MKPQ--DFEYVWQNFVEQEEGESKAFQPWE 172 (190)
T ss_pred hhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE--ecHH--HHHHHHHHHHHccCCcCCccHhHH
Confidence 9999999998874 332 4799999999999996 3332 56677777766 667 887654
No 25
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.75 E-value=2e-17 Score=156.16 Aligned_cols=168 Identities=12% Similarity=0.099 Sum_probs=110.5
Q ss_pred CcceEEEEEeeccCceeecCCCC--C-------cccc-ch-----------------------------HHHHHhhccCE
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGE--G-------VAES-GG-----------------------------YYSQLLQEYDA 259 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~--~-------~wi~-~~-----------------------------~~~~~r~~~Da 259 (427)
....|++.+++|||||++....+ . .|.. +. ...++.+.+|+
T Consensus 19 ~m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~i~~ 98 (231)
T 3kgy_A 19 GMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFERTGA 98 (231)
T ss_dssp GSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHHTEEE
T ss_pred ccceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHhcCCE
Confidence 55669999999999999974221 1 1321 00 12335678999
Q ss_pred EEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCCccccCCCceEE-EEecCCCCCccccccCCcEEEEeCCCC
Q 014311 260 IILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIPGLSEESSSKVI-VFTDGEITVEPDMGTKGIETVNLHQLN 337 (427)
Q Consensus 260 iLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~~~~~~~~-v~t~~~~~~~~~l~~~~v~~i~~~~~d 337 (427)
+||| +|.......+...++. .-..+|++++.+.++. . .....+ +++. |
T Consensus 99 vIMGRkTye~~~~~wp~~~p~--~r~~iVlS~~~~~~~~-----~-~~~~~v~~v~~----------------------~ 148 (231)
T 3kgy_A 99 HIMGKRMFEGGERGWPEEAPF--HTPVYVLTHERRNPWV-----R-PGGTTFYFVND----------------------G 148 (231)
T ss_dssp EEEEHHHHHHHHHHSCSSCSC--CSEEEEECSSCCCCEE-----E-TTTEEEEEECS----------------------C
T ss_pred EEEChhhhhhhhhhcCCcCcC--CCcEEEEcCCCCCccc-----c-CCCcEEEEEcC----------------------C
Confidence 9999 5643221111111111 3345677776532111 0 001111 2222 8
Q ss_pred HHHHHHHHHH-CCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEE
Q 014311 338 LKAVLDYCYS-HGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKM 416 (427)
Q Consensus 338 l~~~l~~L~~-~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~ 416 (427)
+.++++.|++ .++++|+|+| | ++|+++|+++|||||++|+++|+++| +|.+++++.+ ....+|++. .+.
T Consensus 149 l~eal~~l~~~~~~~~I~V~G---G---~~l~~~~L~~gLvDel~lti~Pv~lG-~G~~lF~~~~--~~~~~l~l~-~~~ 218 (231)
T 3kgy_A 149 PEQALALAREAAGERDIRISG---G---ANVIQQYLNLGLVDELEIALIPVIFG-GGRRLFENLH--EPLPQFRID-RVL 218 (231)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE---C---HHHHHHHHHTTCCSEEEEEEESCCCS-SSEESSCSCC--SSCCCEEEE-EEE
T ss_pred HHHHHHHHHhhcCCCcEEEeC---C---HHHHHHHHhCCCCCEEEEEEeceecc-CCCccCCCCC--CccceeEEE-EEE
Confidence 9999999997 6999999995 4 56699999999999999999999999 5777744322 125678876 678
Q ss_pred ecCcEEEEEe
Q 014311 417 SSQSIVLEGY 426 (427)
Q Consensus 417 ~g~di~~~~Y 426 (427)
+.+++++++|
T Consensus 219 ~~~Gvv~l~Y 228 (231)
T 3kgy_A 219 ASPTATHLRY 228 (231)
T ss_dssp ECSSCEEEEE
T ss_pred cCCCEEEEEE
Confidence 9999999998
No 26
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=99.63 E-value=9.1e-15 Score=130.97 Aligned_cols=148 Identities=10% Similarity=-0.017 Sum_probs=106.5
Q ss_pred EEEEEeeccCceeecCCCCCcc-ccchH--HHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCC-CCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVA-ESGGY--YSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHA-SPIR 297 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~w-i~~~~--~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~-l~~~ 297 (427)
|++.+|+|+||+|+ .+|...| .-..+ +.+.....|++||| +|.... + ++ .+....+|+|++.. ..+
T Consensus 3 i~~~~A~s~dG~Ig-~~g~l~W~~~~~d~~~f~~~t~~~~vimGRkTyes~-~-----~p-l~~r~~iV~S~~~~~~~~- 73 (162)
T 1vdr_A 3 LVSVAALAENRVIG-RDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESM-R-----DD-LPGSAQIVMSRSERSFSV- 73 (162)
T ss_dssp EEEEEEEEETSEEE-BTTBCSSCCCHHHHHHHHHHTSSSCEEEEHHHHHHT-T-----TS-CCSSSEEEECSSCCCCCS-
T ss_pred EEEEEEEcCCCcEE-CCCCccccCChHHHHHHHHhhCCCEEEEcchHHhhC-C-----cc-CCcCeEEEEcCCCcccCC-
Confidence 78999999999999 8899999 42332 23445688999999 565432 2 12 22344677777643 111
Q ss_pred CCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCc
Q 014311 298 IPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLL 377 (427)
Q Consensus 298 ~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLv 377 (427)
.++.++ . |+.++++.|++++.++|+|.| | ++++++|++ ++
T Consensus 74 ----------------------------~~~~~~---~-~~~~~l~~l~~~~~~~i~viG---G---~~l~~~~l~--lv 113 (162)
T 1vdr_A 74 ----------------------------DTAHRA---A-SVEEAVDIAASLDAETAYVIG---G---AAIYALFQP--HL 113 (162)
T ss_dssp ----------------------------SSCCEE---S-SHHHHHHHHHHTTCSCEEEEE---C---HHHHHHHGG--GC
T ss_pred ----------------------------CCEEEE---C-CHHHHHHHHHhCCCCcEEEEC---C---HHHHHHHHH--hC
Confidence 111111 1 899999999999999999995 4 566999997 99
Q ss_pred cEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEecCcEEEEEe
Q 014311 378 QKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGY 426 (427)
Q Consensus 378 DEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g~di~~~~Y 426 (427)
||++|++.|++++ |.++ |+..+ ..+|++++.+.+. ++..++|
T Consensus 114 Del~lt~ip~~~~--G~~~---Fp~~~-~~~~~l~~~~~~~-~~~~~~Y 155 (162)
T 1vdr_A 114 DRMVLSRVPGEYE--GDTY---YPEWD-AAEWELDAETDHE-GFTLQEW 155 (162)
T ss_dssp SEEEEEEEEEECC--CSEE---CCCCC-TTTEEEEEEEECS-SCEEEEE
T ss_pred CEEEEEEEccccc--cCEE---CCCCC-chHCEEEEEecCC-CEEEEEE
Confidence 9999999999994 4456 33343 5789999999887 7777777
No 27
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=99.59 E-value=4.2e-14 Score=126.98 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=105.8
Q ss_pred EEEEEeeccCceeecCCCCCccccchH--HHHHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGY--YSQLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~--~~~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
|++.+|+|+||+|+ .+|+..|....+ +.+.....|++||| +|...- + ++ .+....+|+|++.....
T Consensus 2 i~~~~A~s~dG~Ig-~~g~l~W~~~~d~~~f~~~t~~~~vimGRkTyes~-~-----~p-l~~r~~iV~S~~~~~~~--- 70 (164)
T 1zdr_A 2 ISHIVAMDENRVIG-KDNRLPWHLPADLAYFKRVTMGHAIVMGRKTFEAI-G-----RP-LPGRDNVVVTGNRSFRP--- 70 (164)
T ss_dssp EEEEEEEETTCEEE-BTTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHH-C-----SC-CTTSEEEEECSCTTCCC---
T ss_pred EEEEEEEcCCCeEe-CCCCcccCCHHHHHHHHHHhcCCEEEECCcHHhcC-C-----CC-CCCCeEEEEcCCCCcCC---
Confidence 78999999999997 889999974332 22445689999999 565432 1 12 23445677777643211
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
.++.++ . |+.++++.|++ +.++|+|.| | ++++++|++ |+||
T Consensus 71 --------------------------~~~~~~---~-~~~~~l~~l~~-~~~~i~viG---G---~~l~~~~l~--lvDe 111 (164)
T 1zdr_A 71 --------------------------EGCLVL---H-SLEEVKQWIAS-RADEVFIIG---G---AELFRATMP--IVDR 111 (164)
T ss_dssp --------------------------TTCEEE---C-SHHHHHHHHHT-CCSCEEEEE---C---HHHHHHHGG--GCCE
T ss_pred --------------------------CCeEEE---C-CHHHHHHHHhc-CCCeEEEEC---c---HHHHHHHHH--hCCE
Confidence 112211 1 79999999987 478999995 4 566999997 9999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec----C--cEEEEEe
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS----Q--SIVLEGY 426 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g----~--di~~~~Y 426 (427)
++|++.|++++ |.++ |+..+ ..+|++++.+.++ + +..++.|
T Consensus 112 l~lt~ip~~~~--G~~~---Fp~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~Y 158 (164)
T 1zdr_A 112 LYVTKIFASFP--GDTF---YPPIS-DDEWEIVSYTPGGKDEKNPYEHAFIIY 158 (164)
T ss_dssp EEEEEESSCCC--CSEE---CCCCC-TTTEEEEEEEECCCSSSSCSCEEEEEE
T ss_pred EEEEEeccccC--CcEE---CCCCC-hhHcEEEEEEecccccCCCceEEEEEE
Confidence 99999999994 4456 33343 5789999999987 4 6777777
No 28
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=99.53 E-value=3.2e-13 Score=123.96 Aligned_cols=150 Identities=10% Similarity=0.082 Sum_probs=106.3
Q ss_pred eEEEEEeeccCceeecCCCCCccccchHHHHH--hhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCC
Q 014311 222 FATLRYTLSVNGHVLDQLGEGVAESGGYYSQL--LQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRI 298 (427)
Q Consensus 222 ~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~--r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~ 298 (427)
.|++.+|+|+||+|+ .+|+..|.-..+...+ ....|++||| +|.... |. ++ -+.-..+|+|++......
T Consensus 24 ~i~~i~A~s~dG~IG-~~g~lpW~~~~D~~~fk~~t~~~~vIMGRkTyesi-~~----~p-lp~r~~iVlSr~~~~~~~- 95 (190)
T 3ix9_A 24 KIVAIWAQDEEGVIG-KDNRLPWYLPAELQHFKETTLNHAILMGRVTFDGM-GR----RL-LPKRETLILTRNPEEKID- 95 (190)
T ss_dssp CEEEEEEECTTCEEE-BTTBCSCCCHHHHHHHHHHHTTSEEEEEHHHHHHT-TT----CC-CTTCEEEEECCSCCSCCS-
T ss_pred eEEEEEEECCCCcEe-CCCCcCCCChHHHHHHHHHhcCCeEEEcCcchhhc-Cc----cC-CCCCEEEEEcCCCCCCCC-
Confidence 389999999999995 8999999754443322 2356999999 565432 11 11 122346777776542210
Q ss_pred CccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCcc
Q 014311 299 PGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378 (427)
Q Consensus 299 ~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvD 378 (427)
. +.++ + |+.++++.|++. .++|||.| | ++++++|+. |+|
T Consensus 96 --------~-~~v~-~----------------------~~~eal~~lk~~-~~~i~ViG---G---~~ly~~~l~--liD 134 (190)
T 3ix9_A 96 --------G-VATF-H----------------------DVQSVLDWYSAQ-EKNLYIVG---G---KQIFQAFEP--YLD 134 (190)
T ss_dssp --------S-SEEE-S----------------------SHHHHHHHHHTS-CSCEEEEE---C---HHHHHHHGG--GCS
T ss_pred --------C-EEEE-C----------------------CHHHHHHHHHhC-CCCEEEEC---C---HHHHHHHHh--hCC
Confidence 0 1122 2 799999999987 68999995 4 566999995 999
Q ss_pred EEEEEEEeeEeCCCCCCCCccccc-cccccCeeeeeeEEecCc------EEEEEe
Q 014311 379 KIVVEVLPVWNGSDGGNPHTLLNS-LGKRLILKNLQPKMSSQS------IVLEGY 426 (427)
Q Consensus 379 El~l~i~P~llG~~g~~l~~~~~~-~~~~~~L~l~~~~~~g~d------i~~~~Y 426 (427)
|++|++.|+. | +|.++| +. .+ ..+|++++.+.+.++ ..++.|
T Consensus 135 el~lt~ip~~-g-~Gd~lF---p~~~~-~~~~~lv~~~~~~~~~~~~~~~~f~~y 183 (190)
T 3ix9_A 135 EVIVTHIHAR-V-EGDTYF---PAEFD-LSLFETVSSKFYTKDEKNPYDFTIQYR 183 (190)
T ss_dssp EEEEEEESSC-C-CCSEEC---CCCCC-GGGEEEEEEEEECCBTTBCSCEEEEEE
T ss_pred EEEEEEeCcc-c-ccCCcC---CCCCC-ccccEEEEEEeccCCCcCCceEEEEEE
Confidence 9999999999 6 677774 33 33 578999999999876 666666
No 29
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=99.51 E-value=2.3e-14 Score=131.98 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=91.7
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccchHH---HHHh------hccCEEEEc-cccccccCCCCCCCCCCCCCeEEEE
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESGGYY---SQLL------QEYDAIILS-ASSTKKYSIPASQEPDANQPFRIIT 288 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~---~~~r------~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVv 288 (427)
++|.|++.+|+||||++++.+|...|....+. .++. +..|+|||| +|.....+.+ ++ -+....+|+
T Consensus 2 ~~~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~---~p-l~~r~~iVl 77 (192)
T 1aoe_A 2 LKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKF---RP-LPDRLNIIL 77 (192)
T ss_dssp CSCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGG---CS-CTTSEEEEE
T ss_pred CCCEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccc---cC-CCCCeEEEE
Confidence 57999999999999999999999999754433 3332 236999999 5754432111 01 234567888
Q ss_pred ccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHH
Q 014311 289 VSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLL 368 (427)
Q Consensus 289 d~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~ 368 (427)
|++..... .. ..+ ++.+ |+.++++. + ++.++|+|.| | ++|+
T Consensus 78 S~~~~~~~-----~~---~~~-~v~~----------------------~~~~al~~-~-~~~~~i~ViG---G---~~l~ 118 (192)
T 1aoe_A 78 SRSYENEI-----ID---DNI-IHAS----------------------SIESSLNL-V-SDVERVFIIG---G---AEIY 118 (192)
T ss_dssp CTTCCCEE-----EE---TTE-EEES----------------------SHHHHHHT-C-CSEEEEEECC---C---HHHH
T ss_pred cCCCcccc-----CC---CCE-EEEC----------------------CHHHHHHh-h-cCCCeEEEEc---C---HHHH
Confidence 87643110 00 011 2222 78999987 4 4889999994 5 5669
Q ss_pred HHHHHCCCccEEEEEEEeeEeCC
Q 014311 369 KEGIEQNLLQKIVVEVLPVWNGS 391 (427)
Q Consensus 369 ~sfl~~gLvDEl~l~i~P~llG~ 391 (427)
++||+++|+||++|++.|+++|+
T Consensus 119 ~~~l~~~lvDel~lt~ip~~lG~ 141 (192)
T 1aoe_A 119 NELINNSLVSHLLITEIEHPSPE 141 (192)
T ss_dssp HHHTTSTTEEEEEEEEEECSCGG
T ss_pred HHHhcCCCCCEEEEEEEEcccCC
Confidence 99999999999999999999994
No 30
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=99.49 E-value=1.5e-13 Score=125.93 Aligned_cols=143 Identities=11% Similarity=0.031 Sum_probs=98.8
Q ss_pred EEEEEeeccCceeecCCCCCcc-ccch---HHHHHhhccC------EEEEc-cccccccCCCCCCCCCCCCCeEEEEccC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVA-ESGG---YYSQLLQEYD------AIILS-ASSTKKYSIPASQEPDANQPFRIITVSN 291 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~w-i~~~---~~~~~r~~~D------aiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~ 291 (427)
|++.+|+|+||+| ..+|+..| .-.. .+.++....| ++||| +|.....+. .++ .+....+|+|++
T Consensus 4 i~~i~A~s~dG~I-g~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~---~~p-l~~r~~iVlSr~ 78 (186)
T 1kmv_A 4 LNCIVAVSQNMGI-GKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEK---NRP-LKGRINLVLSRE 78 (186)
T ss_dssp EEEEEEECTTCEE-EBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGG---GCS-CTTSEEEEECSS
T ss_pred EEEEEEECCCCCE-eCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcc---cCC-CCCCeEEEECCC
Confidence 7899999999999 78999999 4333 3455566776 99999 565432110 011 234467888887
Q ss_pred CCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC----CCCeEEEEecCCcccHHHH
Q 014311 292 HASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH----GFCSVLVDLRGNYGDLEML 367 (427)
Q Consensus 292 ~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~----g~~~IlveGG~GGg~L~~l 367 (427)
..... + .+.++.. |+.++++.|++. +.++|||.| | +++
T Consensus 79 ~~~~~---------~-~~~~v~~----------------------~~~~al~~lk~~~~~~~~~~i~ViG---G---~~l 120 (186)
T 1kmv_A 79 LKEPP---------Q-GAHFLSR----------------------SLDDALKLTEQPELANKVDMVWIVG---G---SSV 120 (186)
T ss_dssp CSSCC---------T-TCSEEES----------------------SHHHHHHHHTSTTTTTTEEEEEECC---C---HHH
T ss_pred CccCC---------C-CCEEEEC----------------------CHHHHHHHHhhcccccCCCeEEEEc---C---HHH
Confidence 54211 0 1112222 799999999874 589999994 5 566
Q ss_pred HHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeee
Q 014311 368 LKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQP 414 (427)
Q Consensus 368 ~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~ 414 (427)
+++||+++|+||++|++.|+++| ++. +|+ ... ...|++++.
T Consensus 121 ~~~~l~~~lvDel~lt~ip~~~g-~d~-~Fp---~~~-~~~~~l~~~ 161 (186)
T 1kmv_A 121 YKEAMNHPGHLKLFVTRIMQDFE-SDT-FFP---EID-LEKYKLLPE 161 (186)
T ss_dssp HHHHHTSCSCEEEEEEEESSCCC-CSE-ECC---CCC-TTTCEECSC
T ss_pred HHHHhcCCCCCEEEEEEeCcccC-CCe-ECC---CCC-hhHcEEEEe
Confidence 99999999999999999999999 455 633 332 366777665
No 31
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=99.44 E-value=2e-13 Score=128.77 Aligned_cols=135 Identities=6% Similarity=0.014 Sum_probs=92.6
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccchH---HHHHhhc------cCEEEEc-cccccccCCCCCCCCCCCCCeEEEE
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESGGY---YSQLLQE------YDAIILS-ASSTKKYSIPASQEPDANQPFRIIT 288 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~---~~~~r~~------~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVv 288 (427)
++|.|++.+|+||||++++.+|...|....+ +.++... .|+|||| +|.....+.+ | + -+....||+
T Consensus 2 ~~~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~w--r-P-lp~r~~iVl 77 (227)
T 3cse_A 2 SKVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKF--R-P-LPKRINVVV 77 (227)
T ss_dssp -CCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGG--C-S-CTTSEEEEE
T ss_pred CCcEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccc--c-C-CCcCeEEEE
Confidence 5688999999999999999999999974433 3333333 5999999 5654321111 0 1 224457788
Q ss_pred ccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC-----CCCeEEEEecCCccc
Q 014311 289 VSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH-----GFCSVLVDLRGNYGD 363 (427)
Q Consensus 289 d~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~-----g~~~IlveGG~GGg~ 363 (427)
|++..... ...... ++ +.. |+.++++.|++. +.++|||.| |
T Consensus 78 Sr~~~~~~-----~~~~~~-~~-v~~----------------------sl~~al~~lk~~~~~~~~~~~I~ViG---G-- 123 (227)
T 3cse_A 78 SRSFDGEL-----RKVEDG-IY-HSN----------------------SLRNCLTALQSSLANENKIERIYIIG---G-- 123 (227)
T ss_dssp CTTSSSSC-----EEEETT-EE-EES----------------------CHHHHHHHHTCHHHHTTCEEEEEECC---C--
T ss_pred eCCCcccc-----ccCCCC-EE-EeC----------------------CHHHHHHHHHhhhcccCCCCeEEEEc---C--
Confidence 87653210 000011 22 222 799999999875 789999994 5
Q ss_pred HHHHHHHHHHCCCccEEEEEEEeeEeCCCCCC
Q 014311 364 LEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGN 395 (427)
Q Consensus 364 L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~ 395 (427)
++|+++|| +|+||++|++.|+++|+ |.+
T Consensus 124 -~~ly~~~L--~lvDel~lT~ip~~lG~-G~~ 151 (227)
T 3cse_A 124 -GEIYRQSM--DLADHWLITKIMPLPET-TIP 151 (227)
T ss_dssp -HHHHHHHT--TTCSEEEEEEEEECTTS-CCC
T ss_pred -HHHHHHHH--HhCCEEEEEEEEccccC-CCc
Confidence 56699999 99999999999999994 443
No 32
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=99.43 E-value=1.3e-12 Score=117.64 Aligned_cols=131 Identities=10% Similarity=-0.007 Sum_probs=88.0
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccchHHHH--HhhccCEEEEc-cccccccCCCCCC-CCCCCCCeEEEEccCCCC
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQ--LLQEYDAIILS-ASSTKKYSIPASQ-EPDANQPFRIITVSNHAS 294 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~--~r~~~DaiLvG-~T~~~d~p~l~~r-~~~~~~P~~vVvd~~~~l 294 (427)
.+|.|++.+|+|+||+| ..+|+..|....+... .....+++||| +|..... .+ ++ .+....+|+|++...
T Consensus 2 ~~~~i~~i~A~s~dG~I-g~~g~lpW~~~~d~~~f~~~t~~~~viMGRkTyes~~----~~~~p-l~~r~~iV~S~~~~~ 75 (167)
T 2w3w_A 2 TRAEVGLVWAQSTSGVI-GRGGDIPWSVPEDLTRFKEVTMGHTVIMGRRTWESLP----AKVRP-LPGRRNVVVSRRPDF 75 (167)
T ss_dssp -CCCCEEEEEEETTSEE-EBTTBCSCCCHHHHHHHHHHHTTSEEEEEHHHHHHSC----GGGSS-CTTSEEEEECSCTTC
T ss_pred CceEEEEEEEECCCCcC-cCCCCcCccchHHHHHHHHHhcCCeEEEcchHhhhcC----ccccC-CCCCeEEEEeCCCCC
Confidence 46779999999999999 6788999974433222 22346999999 5654321 11 11 234456777776432
Q ss_pred CCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHC
Q 014311 295 PIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQ 374 (427)
Q Consensus 295 ~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~ 374 (427)
.. .++.++ . |+.+++ +|+ ++.++|+|.| | ++++++|++
T Consensus 76 ~~-----------------------------~~~~~~---~-~~~~~l-~l~-~~~~~i~ViG---G---~~l~~~~l~- 113 (167)
T 2w3w_A 76 VA-----------------------------EGARVA---G-SLEAAL-AYA-GSDPAPWVIG---G---AQIYLLALP- 113 (167)
T ss_dssp CC-----------------------------TTSEEE---S-SHHHHH-HHT-TTCSSCEEEE---C---HHHHHHHGG-
T ss_pred CC-----------------------------CCEEEE---C-CHHHHH-Hhh-cCCCeEEEEc---h---HHHHHHHHH-
Confidence 11 111111 1 788888 675 6788999995 4 566999998
Q ss_pred CCccEEEEEEEeeEeCC-CCCCCCc
Q 014311 375 NLLQKIVVEVLPVWNGS-DGGNPHT 398 (427)
Q Consensus 375 gLvDEl~l~i~P~llG~-~g~~l~~ 398 (427)
|+||++|++.|+++|. +|.++|+
T Consensus 114 -lvDel~lt~ip~~~G~~~Gd~~Fp 137 (167)
T 2w3w_A 114 -HATRCEVTEIEIDLRRDDDDALAP 137 (167)
T ss_dssp -GCSEEEEEEEECCCCCCTTSEECC
T ss_pred -HCCEEEEEEEEeecCCCCccEeCC
Confidence 9999999999999972 3566643
No 33
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=99.41 E-value=1.4e-12 Score=116.37 Aligned_cols=144 Identities=8% Similarity=0.008 Sum_probs=97.7
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHH--HHhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYS--QLLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~--~~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
|++.+|+|+||+| ..+|+..|.-..+.. +.....|++||| +|.... + ++ .+....+|+|++.....
T Consensus 3 i~~~~A~s~dG~I-g~~g~lpW~~~~d~~~f~~~t~~~~viMGRkTyes~-~-----~p-l~~r~~iV~S~~~~~~~--- 71 (159)
T 2w9h_A 3 LSILVAHDLQRVI-GFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESI-G-----KP-LPNRRNVVLTSDTSFNV--- 71 (159)
T ss_dssp EEEEEEECTTCEE-EBTTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHH-C-----SC-CTTSEEEEECSCTTCCC---
T ss_pred EEEEEEECCCCeE-cCCCccCccchHHHHHHHHHhcCCEEEECCChhhcc-c-----cc-CCCCEEEEEcCCCCcCC---
Confidence 7899999999999 788999997433222 233458999999 565432 1 11 22345677777643210
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
+ .+.++ + |+.++++. .++|+|.| | ++++++|++ |+||
T Consensus 72 ------~-~~~~~-~----------------------~~~~~l~~-----~~~i~viG---G---~~l~~~~l~--lvDe 108 (159)
T 2w9h_A 72 ------E-GVDVI-H----------------------SIEDIYQL-----PGHVFIFG---G---QTLFEEMID--KVDD 108 (159)
T ss_dssp ------T-TCEEE-C----------------------SGGGGGGS-----CSCEEEEE---C---HHHHHHHTT--TCSE
T ss_pred ------C-CeEEE-C----------------------CHHHHHhc-----CCcEEEEC---h---HHHHHHHHH--hCCE
Confidence 0 11111 1 45555554 67999995 4 566999996 9999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec----C--cEEEEEe
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS----Q--SIVLEGY 426 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g----~--di~~~~Y 426 (427)
++|++.|++++ |.++| +..+ ..+|++++.+.++ + +..++.|
T Consensus 109 l~lt~ip~~~~--Gd~~F---p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~Y 155 (159)
T 2w9h_A 109 MYITVIEGKFR--GDTFF---PPYT-FEDWEVASSVEGKLDEKNTIPHTFLHL 155 (159)
T ss_dssp EEEEEECSCCC--CSEEC---CCCC-TTTEEEEEEEECCCBTTBCSCEEEEEE
T ss_pred EEEEEeccccc--CCeeC---CCCC-hhHcEEEEEEeccccccCCccEEEEEE
Confidence 99999999994 45563 3333 3589999999987 5 6787777
No 34
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=99.34 E-value=1e-11 Score=111.15 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=96.7
Q ss_pred EEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCCc
Q 014311 224 TLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIPG 300 (427)
Q Consensus 224 ~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~l 300 (427)
.+.+|+|+||+|+ .+|+..|.-..+...++. ..+++||| +|.... +. + + -+....+|+|++....+
T Consensus 2 ~li~A~s~dg~IG-~~g~lpW~~~~D~~~F~~~t~~~~viMGRkTyes~-~~---~-p-lp~r~~iVlS~~~~~~~---- 70 (162)
T 3dfr_A 2 AFLWAQNRNGLIG-KDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESF-PK---R-P-LPERTNVVLTHQEDYQA---- 70 (162)
T ss_dssp EEEEEECTTCEEE-BTTBCSSCCHHHHHHHHHTTTTSEEEEEHHHHHHS-SS---S-S-CTTSEEEEECSCTTCCC----
T ss_pred EEEEEECCCCeEe-CCCCCCCCcHHHHHHHHHHhcCCeEEEecchhhhc-cc---c-c-CCCCcEEEEcCCCCCCC----
Confidence 4778999999995 689999975555544443 46999999 565432 10 1 1 12334677777654211
Q ss_pred cccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEE
Q 014311 301 LSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKI 380 (427)
Q Consensus 301 ~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl 380 (427)
.+++++ -|+.++++.|++++.++|+|.| | ++++++|+. |+||+
T Consensus 71 -------------------------~~~~~~----~~~~~~l~~lk~~~~~~i~viG---G---~~l~~~~l~--l~Del 113 (162)
T 3dfr_A 71 -------------------------QGAVVV----HDVAAVFAYAKQHLDQELVIAG---G---AQIFTAFKD--DVDTL 113 (162)
T ss_dssp -------------------------TTSEEE----SSHHHHHHHHHHCCSSCEEECC---C---HHHHHHTGG--GCCEE
T ss_pred -------------------------CCEEEE----CCHHHHHHHHhcCCCCCEEEEC---C---HHHHHHHHh--hCCEE
Confidence 111111 1899999999999889999994 5 566999994 99999
Q ss_pred EEEEEeeEeCCCCCCCCccccccccccCeeeeeeEE
Q 014311 381 VVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKM 416 (427)
Q Consensus 381 ~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~ 416 (427)
+|++.|..+ +|.++| +.++ ...|++++.+.
T Consensus 114 ~lT~i~~~~--~Gd~~F---p~~~-~~~~~l~~~~~ 143 (162)
T 3dfr_A 114 LVTRLAGSF--EGDTKM---IPLN-WDDFTKVSSRT 143 (162)
T ss_dssp EEEEESSCC--CCSEEC---CCCC-GGGEEEEEEEE
T ss_pred EEEEecccc--cccCcC---CCCC-hhHcEEEEEEc
Confidence 999999888 466774 3333 35788888776
No 35
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=99.34 E-value=6.9e-12 Score=112.63 Aligned_cols=140 Identities=9% Similarity=0.031 Sum_probs=96.5
Q ss_pred eEEEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCC
Q 014311 222 FATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRI 298 (427)
Q Consensus 222 ~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~ 298 (427)
.|.+.+|+|+||+|+ .+|+..|.-..+...+++ ..+++||| +|...- | ++. +.-..+|++++...+.
T Consensus 5 ~i~li~A~s~dg~Ig-~~g~lpW~~~~D~~~F~~~t~~~~vIMGRkTyesi-~-----~pl-p~r~~iVlSr~~~~~~-- 74 (165)
T 3s9u_A 5 RVSFMVAMDENRVIG-KDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAI-G-----RPL-PGRRNIIVTRNEGYHV-- 74 (165)
T ss_dssp EEEEEEEEETTCEEE-BTTBCSCCCHHHHHHHHHHHTTSCEEEEHHHHHHH-C-----SCC-TTSCEEEECSCTTCCC--
T ss_pred EEEEEEEECCCCcEE-CCCCcCCCCHhHHHHHHHhhcCCEEEEcchHHhhh-h-----hcc-CCCeEEEECCCCccCC--
Confidence 589999999999997 489999975555444433 45999999 565432 1 111 1223467777643211
Q ss_pred CccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCcc
Q 014311 299 PGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378 (427)
Q Consensus 299 ~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvD 378 (427)
.+++++ -|+.++++.|++. ++|||.| | +++.++|+ +++|
T Consensus 75 ---------------------------~~v~v~----~~~~~al~~l~~~--~~i~viG---G---~~iy~~~l--~l~D 113 (165)
T 3s9u_A 75 ---------------------------EGCEVA----HSVEEVFELCKNE--EEIFIFG---G---AQIYDLFL--PYVD 113 (165)
T ss_dssp ---------------------------TTCEEE----SSHHHHHHHTTTC--SEEEECC---C---HHHHHHHG--GGCC
T ss_pred ---------------------------CCEEEE----CCHHHHHHHhhcC--CCEEEEC---C---HHHHHHHH--hhCC
Confidence 122221 1799999998876 6999994 5 56699999 6999
Q ss_pred EEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec
Q 014311 379 KIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS 418 (427)
Q Consensus 379 El~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g 418 (427)
|++|++.|+.+. |.++|+. ++ ...|++++.+...
T Consensus 114 el~lT~ip~~~~--Gd~~Fp~---~~-~~~~~l~~~~~~~ 147 (165)
T 3s9u_A 114 KLYITKIHHAFE--GDTFFPE---MD-MTNWKEVFVEKGL 147 (165)
T ss_dssp EEEEEEESSCCC--CSEECCC---CC-CTTEEEEEEEECC
T ss_pred EEEEEEcccccc--CCCcCCC---CC-hHHCEEEEEEecc
Confidence 999999999993 5667433 33 2489999888764
No 36
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=99.32 E-value=2.3e-11 Score=110.32 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=96.6
Q ss_pred eEEEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCC
Q 014311 222 FATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRI 298 (427)
Q Consensus 222 ~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~ 298 (427)
.|.+.+|+|+||+|+ .+|+..|.-..+...+++ .-++|||| +|...- | ++ -+.-..+|++++.....
T Consensus 2 ~i~li~A~s~dg~IG-~~g~lpW~lp~Dl~~Fk~~T~g~~vIMGRkTyesi-~-----~p-lp~R~niVlSr~~~~~~-- 71 (178)
T 3tq8_A 2 IITLIAAMDKNRLIG-RNNELPWHLPADLAHFKSITLGKPIVMGRRTFDSI-G-----KP-LPHRRNIVITQQKNLII-- 71 (178)
T ss_dssp EEEEEEEEETTCEEE-BTTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHH-C-----SC-CTTSEEEEECSCTTCCC--
T ss_pred EEEEEEEECCCCcEE-CCCCcCCcCHHHHHHHHHhhcCCEEEEechHHhhh-h-----hc-cCCCeEEEEcCCCCcCC--
Confidence 378999999999996 589999975555444443 44999999 565432 1 11 12233577777643211
Q ss_pred CccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCcc
Q 014311 299 PGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378 (427)
Q Consensus 299 ~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvD 378 (427)
.++.++ -|+.++++.|++ .++|||.| | +++.++|++ ++|
T Consensus 72 ---------------------------~~v~v~----~sl~eal~~l~~--~~~i~viG---G---~~iy~~~l~--l~D 110 (178)
T 3tq8_A 72 ---------------------------EGCDIF----YSLDDALSALTK--EPEVIIIG---G---ARIFKEALP--KAD 110 (178)
T ss_dssp ---------------------------TTSEEE----SSHHHHHHHTTT--CSEEEEEE---C---HHHHHHHGG--GCS
T ss_pred ---------------------------CCeEEE----CCHHHHHHHhhC--CCCEEEEC---C---HHHHHHHHH--hCC
Confidence 112211 178999998876 57999995 4 566999998 999
Q ss_pred EEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec
Q 014311 379 KIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS 418 (427)
Q Consensus 379 El~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g 418 (427)
|++|++.|+.++ |.++|+ .++ ...|++++.+...
T Consensus 111 el~lT~i~~~~~--Gd~~Fp---~~~-~~~w~l~~~~~~~ 144 (178)
T 3tq8_A 111 KMILTIINHSFE--GDVYFP---EWN-DKEWKITSQIKHE 144 (178)
T ss_dssp EEEEEEESSCCC--CSEECC---CCC-TTSEEEEEEEEEC
T ss_pred EEEEEEcccccc--ccCcCC---CCC-hHHCEEEEEEecc
Confidence 999999999995 556643 333 2578988888774
No 37
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=99.32 E-value=8.7e-12 Score=115.92 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=92.8
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccchH---HHHHhhc---------cCEEEEc-cccccccCCCCCCCCCCCCCeE
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESGGY---YSQLLQE---------YDAIILS-ASSTKKYSIPASQEPDANQPFR 285 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~---~~~~r~~---------~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~ 285 (427)
+.|.|++.+|+|+||+|+. +|+..|.-..+ +.++... .++|||| +|.....+. . ++ -+.-..
T Consensus 3 ~~~~i~livA~s~dg~IG~-~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~--~-~P-l~~r~n 77 (206)
T 3nzb_X 3 QQKSLTLIVALTTSYGIGR-SNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQ--F-RP-LKGRIN 77 (206)
T ss_dssp CCSCEEEEEEEETTCEEEB-TTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGG--G-CS-CTTSEE
T ss_pred CCCEEEEEEEECCCCcEeC-CCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhc--c-cC-CCCCeE
Confidence 4577999999999999976 89999964333 3444444 4999999 565432110 0 11 123346
Q ss_pred EEEccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC-------CCCeEEEEec
Q 014311 286 IITVSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH-------GFCSVLVDLR 358 (427)
Q Consensus 286 vVvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~-------g~~~IlveGG 358 (427)
+|++++...... ..+++ .+ |+.++++.|++. +.++|||.|
T Consensus 78 iVlSr~~~~~~~---------~~~~v-~~----------------------sl~eal~~l~~~~~~~~~~~~~~i~ViG- 124 (206)
T 3nzb_X 78 VVITRNESLDLG---------NGIHS-AK----------------------SLDHALELLYRTYGSESSVQINRIFVIG- 124 (206)
T ss_dssp EEECSSCCCCCC---------SSCEE-ES----------------------SHHHHHHHHHHHSCSSSSSEEEEEEECC-
T ss_pred EEEccCCCCCCC---------CCEEE-EC----------------------CHHHHHHHHhccccccccCCCCcEEEEC-
Confidence 888887542111 01122 22 799999999986 578999994
Q ss_pred CCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCc
Q 014311 359 GNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHT 398 (427)
Q Consensus 359 ~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~ 398 (427)
| ++++++||+++|+||++|++.|..+. |.++|+
T Consensus 125 --G---~~iy~~~L~~~l~Del~lT~i~~~~~--gd~~FP 157 (206)
T 3nzb_X 125 --G---AQLYKAAMDHPKLDRIMATIIYKDIH--CDVFFP 157 (206)
T ss_dssp --C---HHHHHHHHHSTTEEEEEEEEECSCCC--CSEECS
T ss_pred --c---HHHHHHHhhCCCCCEEEEEEcccccC--CCccCC
Confidence 5 56699999999999999999999884 445533
No 38
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=99.28 E-value=2.4e-11 Score=108.74 Aligned_cols=139 Identities=6% Similarity=0.009 Sum_probs=94.6
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
|.+.+|+|+||+| ..+|+..|.-..+...+++ .-+++||| +|...- | .+. +.-..+|++++......
T Consensus 3 i~li~A~s~dg~I-G~~g~lpW~~~~D~~~Fk~~t~g~~vIMGRkTyesi-~-----~pl-p~r~~iVlSr~~~~~~~-- 72 (162)
T 3ia4_A 3 VSMIAALANNRVI-GLDNKMPWHLPAELQLFKRATLGKPIVMGRNTFESI-G-----RPL-PGRLNIVLSRQTDYQPE-- 72 (162)
T ss_dssp EEEEEEECGGGEE-EBTTBCSSCCHHHHHHHHHHHTTSCEEEEHHHHHHH-C-----SCC-TTSCEEEECCCTTCCCT--
T ss_pred EEEEEEECCCCcE-ECCCCcCCCCHhHHHHHHHHhcCcEEEEEchHHhhh-h-----hhc-CCCeEEEEcCCCCCCCC--
Confidence 7899999999999 5799999975555444443 44899999 565432 1 111 12235777776532110
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
. +.+ .+ |+.++++.|++ .++|||.| | +++.++|++ ++||
T Consensus 73 -------~-~~v-~~----------------------s~~~al~~l~~--~~~i~viG---G---~~iy~~~l~--l~De 111 (162)
T 3ia4_A 73 -------G-VTV-VA----------------------TLEDAVVAAGD--VEELMIIG---G---ATIYNQCLA--AADR 111 (162)
T ss_dssp -------T-SEE-ES----------------------SHHHHHHHHTT--CSEEEECC---C---HHHHHHHGG--GCSE
T ss_pred -------C-eEE-EC----------------------CHHHHHHHhhC--CCCEEEEC---C---HHHHHHHHH--hCCE
Confidence 0 111 12 78999998876 57999994 5 566999997 9999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS 418 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g 418 (427)
++|++.|+.+. |.++|+. . +...|++++.+...
T Consensus 112 l~lT~i~~~~~--gd~~Fp~---~-~~~~w~~~~~~~~~ 144 (162)
T 3ia4_A 112 LYLTHIELTTE--GDTWFPD---Y-EQYNWQEIEHESYA 144 (162)
T ss_dssp EEEEEECCCCC--CSEECCC---G-GGSCEEEEEEEEEC
T ss_pred EEEEEcccccc--ccccCCC---C-ChHHCEEEEEEecc
Confidence 99999999984 5566433 3 23578888777663
No 39
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=99.23 E-value=4.8e-11 Score=106.49 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=80.5
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHH--HhhccCEEEEc-cccccccCCCCCC-CCCCCCCeEEEEccCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQ--LLQEYDAIILS-ASSTKKYSIPASQ-EPDANQPFRIITVSNHASPIRI 298 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~--~r~~~DaiLvG-~T~~~d~p~l~~r-~~~~~~P~~vVvd~~~~l~~~~ 298 (427)
|++.+|+|+||+|+. +|+..|.-..+... .....+++||| +|..... .+ ++ .+....+|+|++.....
T Consensus 2 i~~i~A~s~dG~Ig~-~g~lpW~~~~d~~~f~~~t~~~~viMGRkTyes~~----~~~~p-l~~r~~iVlS~~~~~~~-- 73 (159)
T 1df7_A 2 VGLIWAQATSGVIGR-GGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLP----AKVRP-LPGRRNVVLSRQADFMA-- 73 (159)
T ss_dssp EEEEEEEETTSEEEB-TTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHSC----GGGSS-CTTSEEEEECSSTTCCC--
T ss_pred EEEEEEECCCCcEeC-CCCcCCCChHHHHHHHHHHCCCEEEEeChHHhhcc----cccCC-CCcCEEEEEeCCCCcCC--
Confidence 789999999999965 88899974333222 22345799999 5654221 01 11 22335677777643211
Q ss_pred CccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCcc
Q 014311 299 PGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQ 378 (427)
Q Consensus 299 ~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvD 378 (427)
.++.++ . |+.++++ .++|+|.| | +++.++|++ |+|
T Consensus 74 ---------------------------~~~~~~---~-~~~~~l~------~~~i~viG---G---~~l~~~~l~--lvD 108 (159)
T 1df7_A 74 ---------------------------SGAEVV---G-SLEEALT------SPETWVIG---G---GQVYALALP--YAT 108 (159)
T ss_dssp ---------------------------TTSEEE---S-SHHHHTT------SSSEEECC---C---HHHHHHHGG--GCS
T ss_pred ---------------------------CCEEEE---C-CHHHHhc------CCcEEEEC---c---HHHHHHHHH--HCC
Confidence 011111 1 6777776 67899994 5 566999998 999
Q ss_pred EEEEEEEeeEeCC-CCCCCCc
Q 014311 379 KIVVEVLPVWNGS-DGGNPHT 398 (427)
Q Consensus 379 El~l~i~P~llG~-~g~~l~~ 398 (427)
|++|++.|+++|+ +|.++|+
T Consensus 109 el~lt~ip~~~G~~~Gd~~Fp 129 (159)
T 1df7_A 109 RCEVTEVDIGLPREAGDALAP 129 (159)
T ss_dssp EEEEEEECCCCCCCTTCEECC
T ss_pred EEEEEEEeeecCCCCccEeCC
Confidence 9999999999972 3566643
No 40
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=99.18 E-value=1e-10 Score=104.34 Aligned_cols=138 Identities=10% Similarity=-0.002 Sum_probs=93.2
Q ss_pred EEEEEeeccCceeecCCCCCccccchHHHHHhh--ccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEccCCCCCCCCC
Q 014311 223 ATLRYTLSVNGHVLDQLGEGVAESGGYYSQLLQ--EYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVSNHASPIRIP 299 (427)
Q Consensus 223 V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r~--~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~~~~l~~~~~ 299 (427)
|.+.+|+|+||.|+ .+|+..|.-..+...+++ .-++|||| +|...- | ++ -+.-..+|++++. .+..
T Consensus 2 i~li~A~s~~g~IG-~~g~lpW~l~~D~~~Fk~~t~~~~vIMGRkT~esi-~-----~p-lp~r~~iVlSr~~-~~~~-- 70 (159)
T 3dau_A 2 ISLIAALAVDRVIG-MENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESI-G-----RP-LPGRKNIILSSQP-GTDD-- 70 (159)
T ss_dssp EEEEEEECGGGEEE-BTTBCSSCCHHHHHHHHHHHTTSCEEEEHHHHHHH-C-----SC-CTTSCEEEECSSC-CSCT--
T ss_pred EEEEEEECCCCeEE-CCCCcCcCChhHHHHHHHHhcCCeEEEechHHhhc-c-----cc-cCCCEEEEECCCC-CCCC--
Confidence 68899999999996 699999975555544443 44899999 565432 1 11 1222356777664 2110
Q ss_pred ccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccE
Q 014311 300 GLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQK 379 (427)
Q Consensus 300 l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDE 379 (427)
. +.+ .+ ++.++++.++ +.++|||.| | +++.++|++ ++||
T Consensus 71 ------~--~~v-~~----------------------s~~~al~~~~--~~~~i~iiG---G---~~iy~~~l~--~~D~ 109 (159)
T 3dau_A 71 ------R--VTW-VK----------------------SVDEAIAACG--DVPEIMVIG---G---GRVYEQFLP--KAQK 109 (159)
T ss_dssp ------T--SEE-ES----------------------SHHHHHHTTC--SCSCEEECC---C---HHHHHHHGG--GCSE
T ss_pred ------C--eEE-EC----------------------CHHHHHHHhc--CCCCEEEEC---C---HHHHHHHHh--hCCE
Confidence 0 111 12 7888888764 678999994 5 566999997 9999
Q ss_pred EEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEEec
Q 014311 380 IVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSS 418 (427)
Q Consensus 380 l~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~~g 418 (427)
++|++.|+.+| |.++|+. ++ ...|++++.+...
T Consensus 110 l~lT~i~~~~~--Gd~~Fp~---~~-~~~~~~~~~~~~~ 142 (159)
T 3dau_A 110 LYLTHIDAEVE--GDTHFPD---YE-PDDWESVFSEFHD 142 (159)
T ss_dssp EEEEEECCCCC--CSEECCC---CC-GGGEEEEEEEEEC
T ss_pred EEEEEcccccC--ccccCCC---CC-hHHCEEEEEEecc
Confidence 99999999997 5566433 32 3578888776653
No 41
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.14 E-value=1.2e-10 Score=101.09 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhh----hcCCCEEEEc--
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGE----LAEGATAYVS-- 145 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~----~~~~~tlY~t-- 145 (427)
++++|+.|+++++++..- ..+.+|||+|+. ||+|+ .|.|... .+.|||+.||.+|.. .++.+++|++
T Consensus 3 ~~~l~~~A~~aa~~ayap-Ys~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 3 RQELITEALKARDMAYAP-YSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAADTP 80 (136)
T ss_dssp HHHHHHHHHHHHTTCBCT-TTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhccCc-cCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHCCCCCeEEEEEEeCCC
Confidence 678999999999886543 235789999997 99999 7999653 468999999998854 4678999996
Q ss_pred --CCCCCCCCCChhhHHHHHhcC
Q 014311 146 --LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 --~ePC~~~g~t~~C~~ai~~~g 166 (427)
++|| .||..+|.+.+
T Consensus 81 ~~~~PC------g~Crq~l~e~~ 97 (136)
T 1uwz_A 81 GPVSPC------GACRQVISELC 97 (136)
T ss_dssp SSCCCC------HHHHHHHHHHS
T ss_pred CccCHH------HHHHHHHHHcC
Confidence 9999 99999999986
No 42
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=99.13 E-value=1.1e-10 Score=121.32 Aligned_cols=145 Identities=9% Similarity=0.071 Sum_probs=96.8
Q ss_pred CcceEEEEEeeccCceeecCCCCCccccchHHHHHh---hc------cCEEEEc-cccccccCCCCCCCCCCCCCeEEEE
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAESGGYYSQLL---QE------YDAIILS-ASSTKKYSIPASQEPDANQPFRIIT 288 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~~~r---~~------~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVv 288 (427)
+.+.+++.+|+|+||+|. .+|+..|.-..+...++ .. .|+|||| +|...- +. ++ -+.-..||+
T Consensus 3 ~MrkI~lIvA~SldG~IG-~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsi-g~----~P-Lp~R~nIVl 75 (521)
T 3hj3_A 3 EKNVSIVVAASVLSSGIG-INGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSI-GR----RP-LKNRIIVVI 75 (521)
T ss_dssp CCCEEEEEEEETTTCEEE-BTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGG-TT----CC-CTTSEEEEE
T ss_pred CCceEEEEEEECCCCcEE-CCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhc-Cc----cc-CCCCeEEEE
Confidence 467799999999999995 68899997544433332 22 4899999 575432 11 11 123346888
Q ss_pred ccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC-CCCeEEEEecCCcccHHHH
Q 014311 289 VSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH-GFCSVLVDLRGNYGDLEML 367 (427)
Q Consensus 289 d~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~-g~~~IlveGG~GGg~L~~l 367 (427)
+++...... .+..++.+ |+.++++.|++. |.++|||.| | +++
T Consensus 76 Srt~~~~~~---------~~~~~V~~----------------------sl~eal~~lk~~~g~~~I~VIG---G---a~l 118 (521)
T 3hj3_A 76 SSSLPQDEA---------DPNVVVFR----------------------NLEDSIENLMNDDSIENIFVCG---G---ESI 118 (521)
T ss_dssp CSSSCCCCS---------CSSEEEES----------------------STTTTTTSSSSCTTEEEEEEEE---C---HHH
T ss_pred cCCCcccCC---------CCCEEEEC----------------------CHHHHHHHHhhccCCCCEEEEe---C---HHH
Confidence 887653110 11222333 677888888876 679999995 4 566
Q ss_pred HHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeee
Q 014311 368 LKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQ 413 (427)
Q Consensus 368 ~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~ 413 (427)
.++|++++|+||++|++.|++.+ +|.++|+. ++.. |++++
T Consensus 119 y~~~L~~~liDel~LT~Ipv~~~-~GDtfFP~---~d~~--w~lv~ 158 (521)
T 3hj3_A 119 YRDALKDNFVDRIYLTRVALEDI-EFDTYFPE---IPET--FLPVY 158 (521)
T ss_dssp HHHHHHTTCCSEEEEEEECCCSS-CCSEECCC---CCTT--EEEEE
T ss_pred HHHHhcCCCCCEEEEEEEeccCc-CcCccCCC---CCCC--cEEEE
Confidence 99999999999999999999544 45566433 3332 66655
No 43
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=99.11 E-value=3.1e-10 Score=117.96 Aligned_cols=143 Identities=11% Similarity=0.039 Sum_probs=97.0
Q ss_pred CcceEEEEEeeccCceeecCCCCCccc-cchH---HHHHhhc------------cCEEEEc-cccccccCCCCCCCCCCC
Q 014311 219 GKPFATLRYTLSVNGHVLDQLGEGVAE-SGGY---YSQLLQE------------YDAIILS-ASSTKKYSIPASQEPDAN 281 (427)
Q Consensus 219 ~rP~V~~k~A~SLDG~Ia~~~g~~~wi-~~~~---~~~~r~~------------~DaiLvG-~T~~~d~p~l~~r~~~~~ 281 (427)
..+-|++.+|+|+||+| +.+|+..|. -..+ +.++... .|+|||| +|...-... . ++ -+
T Consensus 11 ~MrkI~livA~SldG~I-G~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~--~-rP-Lp 85 (515)
T 3nrr_A 11 GCGDLTIFVAVALNKVI-GHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA--S-LP-LK 85 (515)
T ss_dssp TCCCEEEEEEECTTSEE-EBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGG--G-CS-CT
T ss_pred CCceEEEEEEECCCCcC-CCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhc--c-CC-CC
Confidence 45669999999999999 899999997 4443 3333333 5999999 564332110 0 11 12
Q ss_pred CCeEEEEccCCCCCCCCCccccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC-CCCeEEEEecCC
Q 014311 282 QPFRIITVSNHASPIRIPGLSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH-GFCSVLVDLRGN 360 (427)
Q Consensus 282 ~P~~vVvd~~~~l~~~~~l~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~-g~~~IlveGG~G 360 (427)
.-..||+|++.... + .++ +.+ |+.++++.|++. +.++|||.|
T Consensus 86 ~R~nIVlSrt~~~~----------~-~v~-V~~----------------------sl~eal~~Lk~~~~~~~I~VIG--- 128 (515)
T 3nrr_A 86 NRINVILSRTVKEV----------P-GCL-VYE----------------------DLSTAIRDLRANVPHNKIFILG--- 128 (515)
T ss_dssp TEEEEEECSSCCCC----------T-TEE-EES----------------------SHHHHHHHHHHHSCCSCEEECC---
T ss_pred CCeEEEECCCCCCC----------C-CEE-EEC----------------------CHHHHHHHHhhccCCCCEEEEC---
Confidence 23467788775310 1 122 222 899999999987 899999994
Q ss_pred cccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeee
Q 014311 361 YGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQ 413 (427)
Q Consensus 361 Gg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~ 413 (427)
| ++++++|++++++||++|++.|..+. |.++|+ .. ...|++++
T Consensus 129 G---g~Iy~~~L~~~liDel~LT~I~~~~~--GDtfFP---~~--~~~w~~v~ 171 (515)
T 3nrr_A 129 G---SFLYKEVLDNGLCDKIYLTRLNKEYP--GDTYFP---DI--PDTFEITA 171 (515)
T ss_dssp C---HHHHHHHHHTTCEEEEEEEEESSCCC--CSEECC---CC--CTTEEEEE
T ss_pred C---HHHHHHHhhCCCCCEEEEEEecCccC--CCccCC---Cc--hhhCEEEE
Confidence 5 56699999999999999999999885 445533 23 34565554
No 44
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=99.09 E-value=7e-10 Score=107.20 Aligned_cols=78 Identities=8% Similarity=0.030 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeEE
Q 014311 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKM 416 (427)
Q Consensus 337 dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~~ 416 (427)
++.++++.|++.+.++|||.| | ++|+++||++||+||++|++.|+.+| |.++|+ .+. ...|++++.+.
T Consensus 145 sl~eal~~lk~~~~~~I~ViG---G---a~ly~~~L~~glvDel~LT~Ip~~lg--GD~~FP---~~d-~~~~~lv~~~~ 212 (280)
T 1j3k_A 145 KVEDLIVLLGKLNYYKCFILG---G---SVVYQEFLEKKLIKKIYFTRINSTYE--CDVFFP---EIN-ENEYQIISVSD 212 (280)
T ss_dssp SHHHHHHHHHHSCCSCEEECC---C---HHHHHHHHHTTCCSEEEEEEEEEEEC--CSEECC---CCC-TTTEEEEEECC
T ss_pred CHHHHHHHHHhCCCCcEEEEC---C---HHHHHHHhcCccCCEEEEEEeccccC--CceeCC---CCC-hhhcEEEEEEe
Confidence 799999999999899999994 5 56699999999999999999999998 445633 332 46788887765
Q ss_pred -ec-Cc--EEEEEe
Q 014311 417 -SS-QS--IVLEGY 426 (427)
Q Consensus 417 -~g-~d--i~~~~Y 426 (427)
+. ++ ..++.|
T Consensus 213 ~~~~~g~~~~f~~Y 226 (280)
T 1j3k_A 213 VYTSNNTTLDFIIY 226 (280)
T ss_dssp CEEETTEEEEEEEE
T ss_pred eccCCCceEEEEEE
Confidence 43 44 445555
No 45
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.03 E-value=1.1e-09 Score=96.13 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhh----hcCCCEEEEc
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGE----LAEGATAYVS 145 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~----~~~~~tlY~t 145 (427)
..++++|+.|+++++++..- ..+.+|||+|+. ||+|+ .|.|... .+.|||..||.+|.. .++.+++|++
T Consensus 13 ~~~~~L~~~A~~a~~~ayap-ys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~ 90 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKSAYCP-YSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSD 90 (146)
T ss_dssp HHHHHHHHHHHHHHTTCBCT-TTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCC-cCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeC
Confidence 45688999999999887542 235789999996 99998 6999653 468999999998853 3678899998
Q ss_pred -----CCCCCCCCCChhhHHHHHhcC
Q 014311 146 -----LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 -----~ePC~~~g~t~~C~~ai~~~g 166 (427)
++|| .||..+|.+.+
T Consensus 91 ~~~~~~~PC------G~Crq~l~E~~ 110 (146)
T 2fr5_A 91 LQEEFISPC------GACRQVMREFG 110 (146)
T ss_dssp CSSSCCCCC------HHHHHHHHHTC
T ss_pred CCCcccCCC------HHHHHHHHHhC
Confidence 9999 99999999987
No 46
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=98.97 E-value=3e-09 Score=91.66 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=70.3
Q ss_pred ChhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC--CCCCcHHHHHHHHHhh----hcCCCEEEE--
Q 014311 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK--AGQPHAEVFALRDAGE----LAEGATAYV-- 144 (427)
Q Consensus 74 ~~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~--~~~~HAE~~ai~~~~~----~~~~~tlY~-- 144 (427)
+..|+++|+.|+++++++... .+.+|||+|+. ||+|+ .|.|.. ..+.|||+.||.+|.. .++..++|+
T Consensus 4 ~~~~~~L~~~A~~a~~~ay~~--s~f~VGAal~~~dG~i~-~G~NvE~~~~t~cAE~~Ai~~A~~~G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 4 SQEESTLIERATATINSIPIS--EDYSVASAALSSDGRIF-TGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNE 80 (130)
T ss_dssp CHHHHHHHHHHHHHHHHSCCC--SSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHhhCCC--CCCCEEEEEEecCCeEE-EEeccccCCcccCHHHHHHHHHHHcCCCceEEEEEEECC
Confidence 456889999999999987543 45799999996 99998 599976 4578999999998853 366788998
Q ss_pred ---cCCCCCCCCCChhhHHHHHhcC
Q 014311 145 ---SLEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 145 ---t~ePC~~~g~t~~C~~ai~~~g 166 (427)
+++|| .||...|.+.+
T Consensus 81 ~~~~~~PC------G~Crq~l~e~~ 99 (130)
T 2z3g_A 81 NRGILSPC------GRCRQVLLDLH 99 (130)
T ss_dssp TTEEECCC------HHHHHHHHHHC
T ss_pred CCCccCcC------HHHHHHHHHhC
Confidence 68999 99999999986
No 47
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=98.90 E-value=1.4e-08 Score=96.02 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCCccccccccccCeeeeeeE
Q 014311 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPK 415 (427)
Q Consensus 337 dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~~~~~~~~~~~~L~l~~~~ 415 (427)
|+.++++.|++.+.++|||.| | +++.++||+++|+||++|++.|+.+| |.++|+ .++ ...|++++.+
T Consensus 154 sl~eal~~lk~~~~~~I~ViG---G---a~Iy~~~L~~glvDel~lT~ip~~~g--GD~~FP---~~d-~~~~~lv~~~ 220 (238)
T 2bl9_A 154 SIDDLLLLLKKLKYYKCFIIG---G---AQVYRECLSRNLIKQIYFTRINGAYP--CDVFFP---EFD-ESEFRVTSVS 220 (238)
T ss_dssp CHHHHHHHHHTCCCSCEEEEE---C---HHHHHHHHHTTCCSEEEEEEEEEEEC--CSEECC---CCC-GGGEEEEEEC
T ss_pred CHHHHHHHHHhCCCCCEEEEC---c---HHHHHHHhcccCCCEEEEEEeccccC--CceeCC---CCC-chhcEEEEEE
Confidence 799999999998889999995 4 56799999999999999999999998 445533 332 3567776654
No 48
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=98.78 E-value=1.8e-08 Score=95.42 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=89.6
Q ss_pred cCcceEEEEEeeccCceeecCCCCCccccchHHH---HHhhcc------------CEEEEc-cccccccCCCCCCCCCCC
Q 014311 218 TGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYS---QLLQEY------------DAIILS-ASSTKKYSIPASQEPDAN 281 (427)
Q Consensus 218 ~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~---~~r~~~------------DaiLvG-~T~~~d~p~l~~r~~~~~ 281 (427)
...+-|++.+|+|.||.| ..+|...|.-..+.. ++.... ++|||| +|...-.+.+ | + -+
T Consensus 24 ~~mr~i~lIvA~s~ng~I-G~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~--r-P-Lp 98 (240)
T 3rg9_A 24 PPLRPFSVVVASDEKGGI-GDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKF--R-P-LS 98 (240)
T ss_dssp CCCCCEEEEEEEETTCEE-ESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGG--S-S-CT
T ss_pred CCCCeEEEEEEECCCCcE-ECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhc--c-C-CC
Confidence 455679999999999999 579999996444333 333342 789999 5654321110 1 1 23
Q ss_pred CCeEEEEccCCCCCC-CCCcccc----CCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCC----CCe
Q 014311 282 QPFRIITVSNHASPI-RIPGLSE----ESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHG----FCS 352 (427)
Q Consensus 282 ~P~~vVvd~~~~l~~-~~~l~~~----~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g----~~~ 352 (427)
.-..||++++..... ...+-.. ....+-+++.+ ++.++++.|++.+ .++
T Consensus 99 ~R~nIVlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----------------------sl~eal~~l~~~~~~~~~~~ 156 (240)
T 3rg9_A 99 NRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNG----------------------GLEDALRMLVSKEHTSSIET 156 (240)
T ss_dssp TSEEEEECSSCCHHHHHTTCSSHHHHHHHGGGEEEESS----------------------CHHHHHHHTTSHHHHHHEEE
T ss_pred CCeEEEEccCcccccccccccccccccccCCCCEEEEC----------------------CHHHHHHHHhccccccCCCe
Confidence 445688888754210 0000000 00012222222 7999999987654 789
Q ss_pred EEEEecCCcccHHHHHHHHHHCC---CccEEEEEEEe-eEeC
Q 014311 353 VLVDLRGNYGDLEMLLKEGIEQN---LLQKIVVEVLP-VWNG 390 (427)
Q Consensus 353 IlveGG~GGg~L~~l~~sfl~~g---LvDEl~l~i~P-~llG 390 (427)
|||.| | +++..+||+++ ++|+++|+..+ ..+.
T Consensus 157 I~VIG---G---a~IY~~~L~~~~~~l~D~l~lT~I~p~~~e 192 (240)
T 3rg9_A 157 VFCIG---G---GTIYKQALCAPCVNVLQAIHRTVVRPASNS 192 (240)
T ss_dssp EEECC---C---HHHHHHHTSTTGGGGEEEEEEEEEESCCSS
T ss_pred EEEEC---C---HHHHHHHHhcCccccCCEEEEEEEcCCCcC
Confidence 99994 5 56799999999 99999999888 7774
No 49
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=98.73 E-value=4.3e-09 Score=96.73 Aligned_cols=134 Identities=11% Similarity=-0.075 Sum_probs=80.4
Q ss_pred EEEEEeecc--------CceeecCCCCCcc-ccchHHHH--HhhccCEEEEc-cccccccCCCCCCCCCCCCCeEEEEcc
Q 014311 223 ATLRYTLSV--------NGHVLDQLGEGVA-ESGGYYSQ--LLQEYDAIILS-ASSTKKYSIPASQEPDANQPFRIITVS 290 (427)
Q Consensus 223 V~~k~A~SL--------DG~Ia~~~g~~~w-i~~~~~~~--~r~~~DaiLvG-~T~~~d~p~l~~r~~~~~~P~~vVvd~ 290 (427)
|++.+|+|+ ||.|. .+|...| .-..+... .....+++||| +|...-...+ +.-..+|+++
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG-~~g~lpW~~l~~D~~~F~~~t~~~~vIMGRkTyesi~~pl-------p~R~~iVlSr 73 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFG-LGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLL-------PGRSHIVVCD 73 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEE-BTTBCTTCCCHHHHHHHHHHHTTSEEEEEHHHHHTCSSCC-------TTSCEEEECC
T ss_pred EEEEEEEcCccccCCCcCCeEC-CCCCCCCcCChHHHHHHHHHhcCCEEEEchhHhhhccccc-------CCCcEEEEcC
Confidence 789999999 99996 6899999 42333222 22356999999 5654321111 1224678887
Q ss_pred CCC-CCC---CCCccc-cCC-------CceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHCCCCeEEEEec
Q 014311 291 NHA-SPI---RIPGLS-EES-------SSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSHGFCSVLVDLR 358 (427)
Q Consensus 291 ~~~-l~~---~~~l~~-~~~-------~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~g~~~IlveGG 358 (427)
+.+ .+. ...... ... ....++. + ++.++++.|++ +.++|||.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~-~----------------------sl~eal~~lk~-~~~~I~ViG- 128 (193)
T 1juv_A 74 LARDYPVTKDGDLAHFYITWEQYITYISGGEIQV-S----------------------SPNAPFETMLD-QNSKVSVIG- 128 (193)
T ss_dssp TTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEE-E----------------------CTTSSCEEEEC-TTSCEEEEE-
T ss_pred CCcccccccccccceeecccccccccccccceec-C----------------------CHHHHHHHHHc-CCCcEEEEC-
Confidence 642 110 000000 000 0011111 1 44555555544 678999995
Q ss_pred CCcccHHHHHHHHHHCCCccEEEEEEEe-eEeCCCCCCCC
Q 014311 359 GNYGDLEMLLKEGIEQNLLQKIVVEVLP-VWNGSDGGNPH 397 (427)
Q Consensus 359 ~GGg~L~~l~~sfl~~gLvDEl~l~i~P-~llG~~g~~l~ 397 (427)
| +++.++|+ +|+||++|++.| +..| +|.++|
T Consensus 129 --G---~~ly~~~L--~lvDel~lT~ip~~~~~-~gd~~F 160 (193)
T 1juv_A 129 --G---PALLYAAL--PYADEVVVSRIVKRHRV-NSTVQL 160 (193)
T ss_dssp --C---HHHHHHHG--GGCSEEEEEEEEESSCC-CCSEEE
T ss_pred --c---HHHHHHHH--HhCCEEEEEEecccccc-CCCeec
Confidence 4 56699999 699999999999 6777 566664
No 50
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.49 E-value=4.5e-07 Score=79.11 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh----cCCCEEEE--
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL----AEGATAYV-- 144 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~----~~~~tlY~-- 144 (427)
.|+++|+.|+++++++..-.+ +|||+|+. ||+|+ +|.|... .+.|||..||.+|... .+...+|.
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS---~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW---GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLAREN 78 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC---EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCCCCC---CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCCCcEEEEEEEecC
Confidence 478899999999998754433 89999996 99988 7999653 4689999999987432 34556665
Q ss_pred ------cCCCCCCCCCChhhHHHHHhcCccEEEE
Q 014311 145 ------SLEPCNHYGRTPPCTEALIKAKVKKVVV 172 (427)
Q Consensus 145 ------t~ePC~~~g~t~~C~~ai~~~gi~~vv~ 172 (427)
++-|| .+|...|.+.+-.-.|+
T Consensus 79 ~~~~~~~~sPC------G~CRq~l~e~~~~~~v~ 106 (142)
T 3b8f_A 79 EHSELKVLSPC------GVCQERLFYWGPEVQCA 106 (142)
T ss_dssp TTSCCEECCCC------HHHHHHHGGGCTTCEEE
T ss_pred CCCCCCCCCcH------HHHHHHHHHhCCCCEEE
Confidence 34599 99999999987433333
No 51
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=98.24 E-value=5.3e-06 Score=72.33 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHhh----h-cCCCEEEE
Q 014311 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAGE----L-AEGATAYV 144 (427)
Q Consensus 75 ~~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~~----~-~~~~tlY~ 144 (427)
..++.+|+.|+++++++.. ...+.+|||+|+. ||+|+ .|.|-. ..+.|||..||.+|.. . ++..++|.
T Consensus 9 ~~~~~L~~~A~~a~~~aya-PYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~ 86 (142)
T 1r5t_A 9 RQLEALKRAALKACELSYS-PYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICG 86 (142)
T ss_dssp HHHHHHHHHHHHHGGGCBC-TTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCC-CcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEe
Confidence 3467899999988887553 2235789999997 99987 588854 2468999999998732 2 66778887
Q ss_pred c----C-CCCCCCCCChhhHHHHHhcC
Q 014311 145 S----L-EPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 145 t----~-ePC~~~g~t~~C~~ai~~~g 166 (427)
. . .|| .+|...|...+
T Consensus 87 ~~~~~~~~PC------G~CRq~l~e~~ 107 (142)
T 1r5t_A 87 DSEDQCVSPC------GVCRQFINEFV 107 (142)
T ss_dssp SCSSSCCCCC------HHHHHHHHTTS
T ss_pred CCCCcccCHH------HHHHHHHHHhC
Confidence 4 5 899 99999999986
No 52
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=98.23 E-value=3.9e-06 Score=87.39 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=88.9
Q ss_pred cCcceEEEEEeeccCceeecCCCCCccccchHHH---HHhhc------c------CEEEEc-cccccccCCCCCCCCCCC
Q 014311 218 TGKPFATLRYTLSVNGHVLDQLGEGVAESGGYYS---QLLQE------Y------DAIILS-ASSTKKYSIPASQEPDAN 281 (427)
Q Consensus 218 ~~rP~V~~k~A~SLDG~Ia~~~g~~~wi~~~~~~---~~r~~------~------DaiLvG-~T~~~d~p~l~~r~~~~~ 281 (427)
...|-|.+.+|+|.||.|. .+|...|--..+.. +.... . ++|||| +|...-.+. .| + -+
T Consensus 18 ~~~~~islIvA~~~ng~IG-~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k--~r-P-LP 92 (521)
T 3irm_A 18 LALRAFSLVVAVDEHGGIG-DGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPK--FR-P-LP 92 (521)
T ss_dssp CSSCCEEEEEEEETTSEEE-SSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGG--GC-S-CT
T ss_pred cCCceEEEEEEECCCCcee-cCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccc--cC-C-CC
Confidence 5678899999999999996 78899995434333 33333 1 799999 565432110 01 1 12
Q ss_pred CCeEEEEccCCCCC---CCCCc--cccCCCceEEEEecCCCCCccccccCCcEEEEeCCCCHHHHHHHHHHC----CCCe
Q 014311 282 QPFRIITVSNHASP---IRIPG--LSEESSSKVIVFTDGEITVEPDMGTKGIETVNLHQLNLKAVLDYCYSH----GFCS 352 (427)
Q Consensus 282 ~P~~vVvd~~~~l~---~~~~l--~~~~~~~~~~v~t~~~~~~~~~l~~~~v~~i~~~~~dl~~~l~~L~~~----g~~~ 352 (427)
.-..||++++.... ...+- .......+.+++.+ ++.++++.|++. +.++
T Consensus 93 ~R~NIVLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~----------------------SleeAL~~l~~~~~~~~~~~ 150 (521)
T 3irm_A 93 GRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNG----------------------GLEQALRLLASPNYTPSIET 150 (521)
T ss_dssp TEEEEEECSSCCHHHHHHTSSSHHHHHHHGGGEEEESS----------------------CHHHHHHHHTSTTTTTTEEE
T ss_pred CCeEEEEecccccccccccccccccccccCCCCeEEEC----------------------CHHHHHHHHhccccccCCCe
Confidence 34568888875421 00000 00000012222222 799999999876 4789
Q ss_pred EEEEecCCcccHHHHHHHHHHCC---CccEEEEEEEe-eEeC
Q 014311 353 VLVDLRGNYGDLEMLLKEGIEQN---LLQKIVVEVLP-VWNG 390 (427)
Q Consensus 353 IlveGG~GGg~L~~l~~sfl~~g---LvDEl~l~i~P-~llG 390 (427)
|||.| | +++..+||+++ ++||++|+..| ..+-
T Consensus 151 VfVIG---G---a~IY~~~L~~~~~~l~D~l~lT~I~p~~~e 186 (521)
T 3irm_A 151 VYCIG---G---GSVYAEALRPPCVHLLQAIYRTTIRASESS 186 (521)
T ss_dssp EEECC---C---HHHHHHHTSTTGGGGEEEEEEEEECCSSCC
T ss_pred EEEEc---C---HHHHHHHHhCCccccCCEEEEEEecCCCcc
Confidence 99994 5 56799999999 99999999999 5543
No 53
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=98.18 E-value=4.7e-06 Score=72.19 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh--cCCCEEEEc---
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL--AEGATAYVS--- 145 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~--~~~~tlY~t--- 145 (427)
.+++.|+.|.++++++.. ...+.+|||+|+. ||+|+ +|.|-.. .+.|||..||.+|... .+=..++++
T Consensus 9 ~~~~L~~~A~~a~~~aya-PyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~~i~aiav~~~~ 86 (138)
T 3r2n_A 9 NWDTLQKAAVAARANSYA-PYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGGGRLVAVYCVDGN 86 (138)
T ss_dssp CHHHHHHHHHHHHTTCBC-TTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTT
T ss_pred hHHHHHHHHHHHHHhccC-CCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCCCceEEEEEEcCC
Confidence 466789999888777543 2335789999997 99987 8998653 3689999999988433 112346666
Q ss_pred ---CCCCCCCCCChhhHHHHHhcCccEEEEe
Q 014311 146 ---LEPCNHYGRTPPCTEALIKAKVKKVVVG 173 (427)
Q Consensus 146 ---~ePC~~~g~t~~C~~ai~~~gi~~vv~~ 173 (427)
+.|| .+|...|...+-..|++.
T Consensus 87 ~~~~~PC------G~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 87 GDSLMPC------GRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp SCBCCCC------HHHHHHHHHHHCTTCEEE
T ss_pred CCcCCCC------HHHHHHHHHhCCCCEEEE
Confidence 7999 999999999763335443
No 54
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=98.14 E-value=8.5e-06 Score=70.83 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh----cCCCEEEEc--
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL----AEGATAYVS-- 145 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~----~~~~tlY~t-- 145 (427)
+++.|+.|.++++++.. ...+.+|||+++. ||+|+ .|.|-.. .+.|||..||.+|... ++...++..
T Consensus 12 ~~~L~~~A~~a~~~Aya-PYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYV-PYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTK 89 (141)
T ss_dssp HHHHHHHHHHHHTTCBC-TTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhcCC-CcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEeCCC
Confidence 67789999888877543 2235789999997 99877 8988542 4689999999987432 333444544
Q ss_pred --CCCCCCCCCChhhHHHHHhcC
Q 014311 146 --LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 --~ePC~~~g~t~~C~~ai~~~g 166 (427)
..|| .+|...|...+
T Consensus 90 ~~~~PC------G~CRQ~l~E~~ 106 (141)
T 2d30_A 90 RPVPPC------GACRQVMVELC 106 (141)
T ss_dssp SCCCCC------HHHHHHHHHHS
T ss_pred CccCcC------HHHHHHHHHhc
Confidence 6899 99999999975
No 55
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=98.05 E-value=1.2e-05 Score=84.71 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHCCCCeEEEEecCCcccHHHHHHHHHHCCCccEEEEEEEeeEeCCCCCCCC
Q 014311 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLLKEGIEQNLLQKIVVEVLPVWNGSDGGNPH 397 (427)
Q Consensus 337 dl~~~l~~L~~~g~~~IlveGG~GGg~L~~l~~sfl~~gLvDEl~l~i~P~llG~~g~~l~ 397 (427)
++.++++.|++.+.++|||.| | +++..+||.++++||++|+..|..+- |-++|
T Consensus 145 sleeal~~lk~~~~~~IfVIG---G---a~IY~~~L~~~laDeL~LT~I~~~~e--GDtfF 197 (608)
T 3qg2_A 145 KVEDLIVLLGKLNYYKCFILG---G---SVVYQEFLEKKLIKKIYFTRINSTYE--CDVFF 197 (608)
T ss_dssp SHHHHHHHHHHSCCSCEEECC---C---HHHHHHHHHTTCCSEEEEEEEEEEEC--CSEEC
T ss_pred CHHHHHHHHhcCCCCeEEEEC---C---HHHHHHHcccCCCCEEEEEEeCCccC--CCccC
Confidence 799999999999889999994 5 56699999999999999999999984 44553
No 56
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.75 E-value=9.4e-05 Score=71.82 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC------CCCcHHHHHHHHHhhh--cCCCEEEEcCC
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA------GQPHAEVFALRDAGEL--AEGATAYVSLE 147 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~~~~~--~~~~tlY~t~e 147 (427)
++++|..+...|++.......+.+|||+++. ||+|+ .|.|-.. .+.|||..||.+|... .+-..++++..
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~~~~~~iav~~~ 127 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYT 127 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 4555555556666544444446899999997 99887 8988553 2579999999988543 12357788899
Q ss_pred CCCCCCCChhhHHHHHhcC
Q 014311 148 PCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 148 PC~~~g~t~~C~~ai~~~g 166 (427)
|| .+|...|.+.+
T Consensus 128 PC------G~CRQ~l~E~~ 140 (294)
T 1ctt_A 128 PC------GHCRQFMNELN 140 (294)
T ss_dssp CC------HHHHHHHTTBT
T ss_pred CC------HHHHHHHHHhC
Confidence 99 99999999986
No 57
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.48 E-value=0.00023 Score=62.29 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh----cCCCEEEE--
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL----AEGATAYV-- 144 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~----~~~~tlY~-- 144 (427)
..+..++.|.++++++.. ...+.+|||+|.. ||+|+ +|.|-.. .+.|||..||.+|... ++...++.
T Consensus 24 ~~~~L~~~A~~a~~~AYa-PYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~~~i~aiavv~~~ 101 (150)
T 3mpz_A 24 NWNALRSKAIEVSRHAYA-PYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPD 101 (150)
T ss_dssp CHHHHHHHHHHHHTTCBC-TTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHhccC-CCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCCCceEEEEEEcCC
Confidence 457788989887776543 3335789999987 99988 8988653 4689999999987432 33333332
Q ss_pred --cCCCCCCCCCChhhHHHHHhcC
Q 014311 145 --SLEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 145 --t~ePC~~~g~t~~C~~ai~~~g 166 (427)
...|| .+|...|...+
T Consensus 102 ~~~~~PC------G~CRQ~L~Ef~ 119 (150)
T 3mpz_A 102 GGVLMPC------GRCRQVLLEHG 119 (150)
T ss_dssp SCBCCCC------HHHHHHHHHHH
T ss_pred CCccCCC------HHHHHHHHHhC
Confidence 35899 99999999875
No 58
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.25 E-value=0.00068 Score=65.78 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHh------hhcCCCEEEE
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAG------ELAEGATAYV 144 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~------~~~~~~tlY~ 144 (427)
.++..++.|+++++++..-. .+.+|||+|+. ||+|+ +|.|-. ..+.|||..||.++. .+++..++|.
T Consensus 187 ~~~~L~~~A~~a~~~ayaPY-S~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~ 264 (294)
T 1ctt_A 187 TGDALSQAAIAAANRSHMPY-SKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAE 264 (294)
T ss_dssp CSSHHHHHHHHHHHTCBCTT-TCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred ChHHHHHHHHHHHHhcCCCc-CCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEe
Confidence 34789999999998865332 26789999997 88665 687754 357899999998872 2467889998
Q ss_pred cCC----CCCCCCCChhhHHHHHhcCc
Q 014311 145 SLE----PCNHYGRTPPCTEALIKAKV 167 (427)
Q Consensus 145 t~e----PC~~~g~t~~C~~ai~~~gi 167 (427)
+.+ || .+|...|...+-
T Consensus 265 ~~~~~~sPC------G~CRq~L~ef~~ 285 (294)
T 1ctt_A 265 KADAPLIQW------DATSATLKALGC 285 (294)
T ss_dssp CTTCSSCCH------HHHHHHHHHHTC
T ss_pred cCCCCcCcc------HHHHHHHHHHCC
Confidence 877 99 999999999763
No 59
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=96.98 E-value=0.005 Score=54.24 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=59.4
Q ss_pred CCChhHHHHHHHHHHHHHHccCCCCC-CCcEEEEEEe-CCeEEEEEecCC--CCCCcHHHHHHHHHhhh----cCCCEEE
Q 014311 72 NNDKDDGFYMRRCVELATKAVGSTSP-NPMVGCVIVK-DGKIVGEGFHPK--AGQPHAEVFALRDAGEL----AEGATAY 143 (427)
Q Consensus 72 ~~~~~~~~~m~~a~~~A~~~~~~~~~-~~~vGaviv~-~g~ii~~g~n~~--~~~~HAE~~ai~~~~~~----~~~~tlY 143 (427)
..+..|++.++.|.++.++ .... +.+|||++.. ||+|+ .|.|-. ..+.+||..||.+|... +.-..+.
T Consensus 26 ~L~~ed~~Li~~A~~a~~~---~PyS~~f~VGAAll~~dG~i~-tG~NVEn~~~~lCAEr~Ai~~Avs~G~~~~~ai~vv 101 (158)
T 3oj6_A 26 PLSAAGQNLIDTATSVING---IPVSDFYSVASAAISDDGRVF-SGVNVYHFNGGPCAELVVLGVAAAAGATKLTHIVAI 101 (158)
T ss_dssp BCCHHHHHHHHHHHHHHHT---SCCCSSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHh---CCCCCCCcEEEEEEeCCCCEE-EEEccccCCccccHHHHHHHHHHHhCCCceEEEEEE
Confidence 3456788899999887654 2222 2579999988 99987 788753 45689999999988432 2111222
Q ss_pred Ec-----CCCCCCCCCChhhHHHHHhcC
Q 014311 144 VS-----LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 144 ~t-----~ePC~~~g~t~~C~~ai~~~g 166 (427)
.. .-|| ..|-..|...+
T Consensus 102 ~~~~~~~~~PC------G~CRQvL~Ef~ 123 (158)
T 3oj6_A 102 ANEGRGILSPC------GRCRQVLADLH 123 (158)
T ss_dssp ETTTTEEECCC------HHHHHHHHHHS
T ss_pred eCCCCCcCCCC------HHHHHHHHHhC
Confidence 22 3599 99999999875
No 60
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=96.60 E-value=0.012 Score=50.66 Aligned_cols=83 Identities=25% Similarity=0.274 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC----CCCcHHHHHHHHHhhh-cC---CCEEEEc-
Q 014311 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA----GQPHAEVFALRDAGEL-AE---GATAYVS- 145 (427)
Q Consensus 76 ~~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~~~~~-~~---~~tlY~t- 145 (427)
.+.+.++.|.+..+++. ....+.+|||++.. ||+|+ .|.|-.. .+.+||..||-+|-.. .+ =..+.+.
T Consensus 10 ~~~~L~~~A~~a~~~Ay-aPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~ 87 (138)
T 3dmo_A 10 THHALIEAAKAAREKAY-APYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVG 87 (138)
T ss_dssp CHHHHHHHHHHHHTTCB-CTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcc-CCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEc
Confidence 47778888877666544 44446789999998 99975 6777543 3689999999987432 11 1233333
Q ss_pred -----CCCCCCCCCChhhHHHHHhcC
Q 014311 146 -----LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 -----~ePC~~~g~t~~C~~ai~~~g 166 (427)
.-|| ..|-..|...+
T Consensus 88 ~~~~~~~PC------G~CRQ~l~Ef~ 107 (138)
T 3dmo_A 88 ETHGPIAPC------GACRQVMIELG 107 (138)
T ss_dssp SCSSSCCCC------HHHHHHHHHHH
T ss_pred CCCCccCCC------HHHHHHHHHhC
Confidence 5799 99999999874
No 61
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=95.95 E-value=0.026 Score=54.63 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCCC------CCCcHHHHHHHHHhhh--cCCCEEEEcCC
Q 014311 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPKA------GQPHAEVFALRDAGEL--AEGATAYVSLE 147 (427)
Q Consensus 77 ~~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~~~~~--~~~~tlY~t~e 147 (427)
++.++...+..|++......-+.+|||++.. ||+|+ .|.|-.. .+.|||..||-+|-.. .+=..+.+...
T Consensus 52 ~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~~i~~iav~~~ 130 (298)
T 4eg2_A 52 DADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFS 130 (298)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCSCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCCceEEEEeecC
Confidence 4555666666677666666667899999988 89875 6877552 2689999999987432 12245677789
Q ss_pred CCCCCCCChhhHHHHHhcCc
Q 014311 148 PCNHYGRTPPCTEALIKAKV 167 (427)
Q Consensus 148 PC~~~g~t~~C~~ai~~~gi 167 (427)
|| ..|-.-|...+-
T Consensus 131 PC------G~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 131 PC------GHCRQFMNELTT 144 (298)
T ss_dssp CC------HHHHHHHTTBTT
T ss_pred CC------HHHHHHHHHhcC
Confidence 99 999999998863
No 62
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=94.39 E-value=0.039 Score=50.32 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHhh-hc-----CCCEEEEcCCCCCCCCCChhhHHHHHhcC-----c------cEEEEeecCCCCCCCch
Q 014311 122 QPHAEVFALRDAGE-LA-----EGATAYVSLEPCNHYGRTPPCTEALIKAK-----V------KKVVVGMLDPNPIVNSK 184 (427)
Q Consensus 122 ~~HAE~~ai~~~~~-~~-----~~~tlY~t~ePC~~~g~t~~C~~ai~~~g-----i------~~vv~~~~d~~~~~~~~ 184 (427)
..|||+.-|..... .+ =.-|.|+|..|| +.|+..|+..- | .|++|- +++ ...
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC------~~CA~~v~~FL~~~~~v~L~If~aRLY~~--~~~---~~~ 146 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPC------FSCAQEMAKFISKNKHVSLCIKTARIYDD--QGR---CQE 146 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCCh------HHHHHHHHHHHhhCCCeEEEEEEEeeccc--Cch---HHH
Confidence 46999999987643 22 246889999999 99999999853 3 444443 232 456
Q ss_pred hHHHHhhCCcEEEE
Q 014311 185 GLERLRDAGIDVTV 198 (427)
Q Consensus 185 ~~~~l~~~gi~V~~ 198 (427)
|...|.++|+.|..
T Consensus 147 gLr~L~~aG~~v~i 160 (203)
T 3v4k_A 147 GLRTLAEAGAKISI 160 (203)
T ss_pred HHHHHHHCCCeEEe
Confidence 99999999998875
No 63
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=92.63 E-value=0.34 Score=46.75 Aligned_cols=81 Identities=15% Similarity=0.065 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHccCCCCCCCcEEEEEEe-CCeEEEEEecCC----CCCCcHHHHHHHHHh---h---hcCCCEEEEc-
Q 014311 78 GFYMRRCVELATKAVGSTSPNPMVGCVIVK-DGKIVGEGFHPK----AGQPHAEVFALRDAG---E---LAEGATAYVS- 145 (427)
Q Consensus 78 ~~~m~~a~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~~~---~---~~~~~tlY~t- 145 (427)
+..++.|++.++++.. ..-+.+|||+|.. ||+|. +|.|-. ..+..||..||.++- . .++...+...
T Consensus 193 ~~L~~~A~~a~~~aya-PYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~ 270 (298)
T 4eg2_A 193 EELIQQALRAMNISHS-PYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESA 270 (298)
T ss_dssp CHHHHHHHHHHTTCBC-TTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred HHHHHHHHHHHHhccC-CccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCC
Confidence 5688999888877553 3335789999998 89975 566543 357899999998862 2 2333334432
Q ss_pred ---CCCCCCCCCChhhHHHHHhcC
Q 014311 146 ---LEPCNHYGRTPPCTEALIKAK 166 (427)
Q Consensus 146 ---~ePC~~~g~t~~C~~ai~~~g 166 (427)
.-|| .+|...|...+
T Consensus 271 ~~~~sPC------G~CRqvL~e~~ 288 (298)
T 4eg2_A 271 TGKISHL------ADTQATLEVIN 288 (298)
T ss_dssp TCSSCCH------HHHHHHHHHHC
T ss_pred CCCcCCc------HHHHHHHHHhC
Confidence 3588 89988887764
No 64
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=90.03 E-value=0.79 Score=41.24 Aligned_cols=95 Identities=23% Similarity=0.310 Sum_probs=62.8
Q ss_pred CCcEEEEEEe---CCeEE--EEEe--cCC--CCCCcHHHHHHHHHhh-hcC-----CCEEEEcCCCCCCCCCChhhHHHH
Q 014311 98 NPMVGCVIVK---DGKIV--GEGF--HPK--AGQPHAEVFALRDAGE-LAE-----GATAYVSLEPCNHYGRTPPCTEAL 162 (427)
Q Consensus 98 ~~~vGaviv~---~g~ii--~~g~--n~~--~~~~HAE~~ai~~~~~-~~~-----~~tlY~t~ePC~~~g~t~~C~~ai 162 (427)
|.-.=|=.|+ ++.-+ ..|+ |+. ....|||+.=|..... .+. .-|-|+|-.|| +.|+..|
T Consensus 31 n~T~LCYeVk~~~~~s~~~~~~g~~~nq~~~~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC------~~CA~~v 104 (190)
T 3vow_A 31 NETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPC------PDCAGEV 104 (190)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEETTSCGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCC------HHHHHHH
T ss_pred CceEEEEEEEccCCCCCCccccCeecCcCCCcccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCch------HHHHHHH
Confidence 4456677775 33322 2443 322 3457999999987643 222 37899999999 9999999
Q ss_pred Hhc-----CccEEEEeecCCCCC--CCchhHHHHhhCCcEEEE
Q 014311 163 IKA-----KVKKVVVGMLDPNPI--VNSKGLERLRDAGIDVTV 198 (427)
Q Consensus 163 ~~~-----gi~~vv~~~~d~~~~--~~~~~~~~l~~~gi~V~~ 198 (427)
+.. +|+=.||.+.--.-. ..-.|+..|.++|+.|..
T Consensus 105 a~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~i 147 (190)
T 3vow_A 105 AEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEI 147 (190)
T ss_dssp HHHHHHCTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhCCCeEEEEEEEecccccCchHHHHHHHHHHCCCcEEE
Confidence 875 566666666432211 134689999999998875
No 65
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=45.39 E-value=48 Score=34.13 Aligned_cols=86 Identities=31% Similarity=0.394 Sum_probs=65.3
Q ss_pred EEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEc-CCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCC
Q 014311 102 GCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVS-LEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPI 180 (427)
Q Consensus 102 Gaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t-~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~ 180 (427)
.-|+++||+.|+.|.-+.. ..|+-..|+.+|+..++|+.|=+- ..|= +-|......+||+-|+- |-..
T Consensus 428 AIv~akdg~tvGiGaGQ~s-RV~s~r~A~~kAg~~~~G~vlaSDAFFPF------~D~ve~aa~aGv~aIiQ----PGGS 496 (523)
T 3zzm_A 428 AIVIAADGATVGVGMGQVN-RVDAARLAVERGGERVRGAVAASDAFFPF------PDGLETLAAAGVTAVVH----PGGS 496 (523)
T ss_dssp CEEEEETTEEEEEECSCSS-HHHHHHHHHHHHGGGCTTCEEEESSCCSS------HHHHHHHHHTTCCEEEE----CCCC
T ss_pred eEEEEECCeEEEECCCCcc-hHHHHHHHHHHhccccCCeEEEeccCcCC------CccHHHHHHcCCEEEEC----CCCC
Confidence 3467789999999975543 458999999999988999999874 5788 99999999999998886 3221
Q ss_pred C-CchhHHHHhhCCcEEEE
Q 014311 181 V-NSKGLERLRDAGIDVTV 198 (427)
Q Consensus 181 ~-~~~~~~~l~~~gi~V~~ 198 (427)
+ ....++...++||..+.
T Consensus 497 iRD~evI~aane~giaMvf 515 (523)
T 3zzm_A 497 VRDEEVTEAAAKAGVTLYL 515 (523)
T ss_dssp TTHHHHHHHHHHHTCEEEE
T ss_pred CCcHHHHHHHHHcCCeEEE
Confidence 1 23456667777876554
No 66
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=35.28 E-value=91 Score=31.53 Aligned_cols=85 Identities=35% Similarity=0.423 Sum_probs=63.6
Q ss_pred EEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEc-CCCCCCCCCChhhHHHHHhcCccEEEEeecCCCCCC
Q 014311 103 CVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVS-LEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIV 181 (427)
Q Consensus 103 aviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t-~ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~~~~~ 181 (427)
-|+++||+.|+.|.-+.. ..|+-..|+.+|+++.+|+.|=.- ..|= +-|.....++||+-|+- |-..+
T Consensus 370 Iv~akdg~tvGiGaGQ~s-RV~s~riA~~kA~~~~~G~vlASDAFFPF------~D~v~~aa~aGv~aIiQ----PGGSi 438 (464)
T 1zcz_A 370 VLIAKDGVTVGIGSGQPS-RKRAAWIATVMAGEKAKGAVAASDAFFPF------PDSLEILAQAGVKAVVA----PLGSI 438 (464)
T ss_dssp EEEEETTEEEEEECSCSS-HHHHHHHHHHHHGGGGTTCEEEESSCCSS------HHHHHHHHHTTCCEEEE----CCCCT
T ss_pred EEEEeCCeEEEECCCCCc-hHHHHHHHHHHhhcccCCeEEEecccCCc------hhhHHHHHHhCCeEEEc----CCCCc
Confidence 466779999999975533 458888999999887788888764 4788 89999999999999986 32211
Q ss_pred -CchhHHHHhhCCcEEEE
Q 014311 182 -NSKGLERLRDAGIDVTV 198 (427)
Q Consensus 182 -~~~~~~~l~~~gi~V~~ 198 (427)
....++...++||..+.
T Consensus 439 RD~evI~aane~giaMvf 456 (464)
T 1zcz_A 439 RDEEVIEKARELGITFYK 456 (464)
T ss_dssp THHHHHHHHHHHTCEEEE
T ss_pred CcHHHHHHHHHcCCeEEE
Confidence 23456667777876544
No 67
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=28.43 E-value=1.1e+02 Score=31.61 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=63.0
Q ss_pred EEEEEeCCeEEEEEecCCCCCCcHHHHHHHHHhh---hcCCCEEEEcC-CCCCCCCCChhhHHHHHhcCccEEEEeecCC
Q 014311 102 GCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGE---LAEGATAYVSL-EPCNHYGRTPPCTEALIKAKVKKVVVGMLDP 177 (427)
Q Consensus 102 Gaviv~~g~ii~~g~n~~~~~~HAE~~ai~~~~~---~~~~~tlY~t~-ePC~~~g~t~~C~~ai~~~gi~~vv~~~~d~ 177 (427)
.-|+++||+.|+.|.-+.. ..|+-..|+.+|.+ .++|+.|=+-. .|= +-|.....++||+-|+- |
T Consensus 436 AIv~akdg~tvGiGaGQ~s-RV~s~r~A~~kA~~~g~~~~G~vlASDAFFPF------~D~ve~Aa~aGV~aIiQ----P 504 (534)
T 4ehi_A 436 NVVYVKNGAMVAIGMGMTS-RIDAAKAAIAKAKEMGLDLQGCVLASEAFFPF------RDSIDEASKVGVKAIVE----P 504 (534)
T ss_dssp CEEEEETTEEEEEECSSSC-HHHHHHHHHHHHHHTTCCCTTCEEECSSCCCS------THHHHHHHHTTCCEEEE----C
T ss_pred eEEEEeCCeEEEECCCCcc-hHHHHHHHHHHHHhhccCCCCeEEEeccccCC------CccHHHHHHcCCEEEEC----C
Confidence 3467789999999985543 45888999999965 36888887654 588 89999999999998886 3
Q ss_pred CCCC-CchhHHHHhhCCcEEEE
Q 014311 178 NPIV-NSKGLERLRDAGIDVTV 198 (427)
Q Consensus 178 ~~~~-~~~~~~~l~~~gi~V~~ 198 (427)
-..+ ....++...++||..+.
T Consensus 505 GGSiRD~evI~aane~giaMvf 526 (534)
T 4ehi_A 505 GGSIRDDEVVKAADEYGMALYF 526 (534)
T ss_dssp CCCTTHHHHHHHHHHHTCEEEE
T ss_pred CCCCccHHHHHHHHHcCCeEEE
Confidence 2211 23456667777876554
No 68
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=25.35 E-value=95 Score=28.44 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=52.7
Q ss_pred EeCCeEEEEEecCCCCCCcHHHHHHHHHhhhcCCCEEEEcCCCCCCCCCChhhHHHHHhcC-ccEEEEeecCCCCCCCch
Q 014311 106 VKDGKIVGEGFHPKAGQPHAEVFALRDAGELAEGATAYVSLEPCNHYGRTPPCTEALIKAK-VKKVVVGMLDPNPIVNSK 184 (427)
Q Consensus 106 v~~g~ii~~g~n~~~~~~HAE~~ai~~~~~~~~~~tlY~t~ePC~~~g~t~~C~~ai~~~g-i~~vv~~~~d~~~~~~~~ 184 (427)
++||..|+.|.....+.|.+=+.||.+. ..++.|++.+ .|.. .......++.+| |+|++.+..-.++ .
T Consensus 18 IkdG~tV~~gGf~~~g~P~~li~aL~~~--~~kdLtli~~--~~g~---~~~g~~~L~~~G~v~r~i~s~~g~~~----~ 86 (235)
T 3rrl_A 18 LKDGDTILVGGFGLCGIPEYAIDYIYKK--GIKDLIVVSN--NCGV---DDFGLGILLEKKQIKKIIASYVGENK----I 86 (235)
T ss_dssp CCTTCEEEECCBTTBTCCHHHHHHHHHH--TCCSEEEECS--CCCC---SSSGGGGGGTTTCEEEEEESCCCSCH----H
T ss_pred CCCCCEEEECCcCccCCHHHHHHHHHhc--CCCcEEEEEc--CCCC---CCcCHHHHHhCCCeeEEEeccccCCH----H
Confidence 4578888877666667788877787765 4789999987 3311 023668888888 8888865542222 2
Q ss_pred hHHHHhhCCcEEEE
Q 014311 185 GLERLRDAGIDVTV 198 (427)
Q Consensus 185 ~~~~l~~~gi~V~~ 198 (427)
-.+...+..+++..
T Consensus 87 ~~~~~~~G~ie~~~ 100 (235)
T 3rrl_A 87 FESQMLNGEIEVVL 100 (235)
T ss_dssp HHHHHHHTSSEEEE
T ss_pred HHHHHHcCCeEEEE
Confidence 33444455566654
No 69
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=22.21 E-value=3.5 Score=32.21 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=7.9
Q ss_pred ecCCcccHHHHHHHHHHCCCccEE
Q 014311 357 LRGNYGDLEMLLKEGIEQNLLQKI 380 (427)
Q Consensus 357 GG~GGg~L~~l~~sfl~~gLvDEl 380 (427)
||||||.| +.-|| +|+||..
T Consensus 1 ggggggML---N~V~L-EG~IeS~ 20 (110)
T 2hql_A 1 GGGGGGML---NRVFL-EGEIESS 20 (110)
T ss_dssp ------CC---EEEEE-EEEEEEE
T ss_pred CCCCcceE---EEEEE-eeeeehh
Confidence 34456655 55454 6666654
Done!