RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014311
(427 letters)
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 127 bits (320), Expect = 4e-36
Identities = 71/143 (49%), Positives = 101/143 (70%)
Query: 77 DGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGEL 136
+ +YM+ ++LA + G T NP+VG V+VKDG+IVG G H K G+ HAEV A+ AG
Sbjct: 2 EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAH 61
Query: 137 AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDV 196
AEGA YV+LEPC+HYG+TPPC E +I + +K+V V M DPNP+V +G+ +++AGI+V
Sbjct: 62 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEV 121
Query: 197 TVGVEDELCKRLNEAFIHRIVTG 219
G+ + +RLNE F+H + TG
Sbjct: 122 REGILADQAERLNEKFLHFMRTG 144
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 147
Score = 115 bits (288), Expect = 2e-31
Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 4/145 (2%)
Query: 79 FYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDA---GE 135
+M+R +ELA K +G +PNP VG V+VKDG+I+ EGFHP G PHAE A+ A GE
Sbjct: 4 TFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGE 63
Query: 136 LAEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGID 195
GAT V+LEPC+H+G+TPPCT+ +I++ +K VV+G DPNP+ + G+E+ R+ GI+
Sbjct: 64 DLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPV-SGNGVEKFRNHGIE 122
Query: 196 VTVGVEDELCKRLNEAFIHRIVTGK 220
V GV +E K+L E FI + +
Sbjct: 123 VIEGVLEEEVKKLCEFFITYVTKKR 147
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 96.5 bits (239), Expect = 2e-24
Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 74 DKDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDA 133
+ ++MR + LA +A VG V+V + +++GEG++ G+ A A
Sbjct: 4 EFSHEYWMRHALTLAKRAW--DEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMA 61
Query: 134 GELAEGATAYVSLEPCNHY---GRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLR 190
L Y C A+I +++ +VV G D ++ L
Sbjct: 62 LRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH 121
Query: 191 DAG----IDVTVGVEDELCKRLNEAFIHR 215
G +++T G+ + C L F
Sbjct: 122 HPGMNHRVEITEGILADECAALLSDFFRM 150
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 95.2 bits (236), Expect = 5e-24
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 10/148 (6%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGE 135
++++ + A +A VG +IVK+G+I+ + + A A +
Sbjct: 2 GKEYFLKVALREAKRAF--EKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIK 59
Query: 136 LAEGATAYVSLEPCNHYGR---TPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDA 192
A LE C Y C+ AL+ ++++KV+ LD L +
Sbjct: 60 EACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEP 119
Query: 193 ----GIDVTVGVEDELCKRLNEAFIHRI 216
+ +E L F ++
Sbjct: 120 TLNHRVKWEYYPLEE-ASELLSEFFKKL 146
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 93.8 bits (232), Expect = 2e-23
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAG----QPHAEVFALR 131
+ +++R V LA + V + P G VIVKDG I+ EG + HAEV A+R
Sbjct: 4 NHETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIR 62
Query: 132 DAGELA-----EGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNP----IVN 182
A ++ + Y S EPC P C A+ A+ K V + +
Sbjct: 63 KACKVLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDD 116
Query: 183 SKGLERLRDAGIDVTVGVEDELCKRLNEAF 212
S + + + T+ F
Sbjct: 117 SFIYKEIDKPAEERTIPFYQVTLTEHLSPF 146
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 86.6 bits (213), Expect = 6e-21
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAG 134
+D ++M +E A KA +G +I KD +++ + + A A
Sbjct: 2 TNDIYFMTLAIEEAKKAA--QLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAI 59
Query: 135 EL---AEGATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRD 191
E G+ C ++ +++ +VV G DP + + L+
Sbjct: 60 ERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQ 119
Query: 192 AGI----DVTVGVEDELCKRLNEAFIHRI 216
+ V GV E C L F +
Sbjct: 120 SNFNHRAIVDKGVLKEACSTLLTTFFKNL 148
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
europaea [TaxId: 915]}
Length = 189
Score = 83.2 bits (205), Expect = 2e-19
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 20/154 (12%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVK--DGKIVGEGFH--PKAGQP--HAEVFALRD- 132
M +EL + + + + G ++ G + HAE+ AL
Sbjct: 29 RMGYVLELVRANIAAD--GGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLA 86
Query: 133 AGELAEGATAYVSLEPCNHYGRTPPCTEA---LIKAKVKKVVVGMLDPNPIVN------- 182
+L + L C PC +I + V+ +V +
Sbjct: 87 QAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPR 146
Query: 183 -SKGLERLRDAGIDVTVGVEDELCKRLNEAFIHR 215
+ L GI VT G+ + L +
Sbjct: 147 PENWMGGLEARGITVTTGLLRDAACALLREYNAC 180
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 81.5 bits (200), Expect = 1e-18
Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 60/193 (31%)
Query: 80 YMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFH-PKAGQPHAEVFALRDAGELAE 138
++ ++ + S + VG VI K+G+I+ G++ AG + +A L +
Sbjct: 6 VLQIAYLVSQE---SKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNK 62
Query: 139 GATAYV--------------------------------------------------SLEP 148
A + S+E
Sbjct: 63 PKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEG 122
Query: 149 CNHYGRTPPC---TEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDAGIDVTVGVEDELC 205
Y PC +A+ ++ +KK+V + LR+AGI+V V +
Sbjct: 123 ATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKN--KPGWDDILRNAGIEV-FNVPKKNL 179
Query: 206 KRLNEAFIHRIVT 218
+LN I+
Sbjct: 180 NKLNWENINEFCG 192
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 80.3 bits (197), Expect = 1e-18
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 75 KDDGFYMRRCVELATKAVGSTSPNPMVGCVIV--KDGKIVGEGFH----PKAGQPHAEVF 128
K D M E A +G ++ KDG ++G G + + H E+
Sbjct: 7 KWDQKGMDIAYEEAALGY--KEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 64
Query: 129 ALRDAGELAE----GATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVVGMLDPNPIVNSK 184
L + G L T Y +L PC CT A+I + + VVG N SK
Sbjct: 65 TLENCGRLEGKVYKDTTLYTTLSPC------DMCTGAIIMYGIPRCVVG---ENVNFKSK 115
Query: 185 GLERLRDAGIDVTVGVEDELCKRLNEAFIHR 215
G + L+ G +V V+DE CK++ + FI
Sbjct: 116 GEKYLQTRGHEVV-VVDDERCKKIMKQFIDE 145
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 75.3 bits (184), Expect = 4e-17
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 5/129 (3%)
Query: 76 DDGFYMRRCVELATKAVGSTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGE 135
+ +M + A A +G V+V DG+++ + A
Sbjct: 2 ERTHFMELALVEARSAG--ERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIR 59
Query: 136 LAEGATAYVSLEPCNHYGR---TPPCTEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDA 192
+A A L + Y C A+ A+++++ G DP G+
Sbjct: 60 MACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQP 119
Query: 193 GIDVTVGVE 201
V
Sbjct: 120 TCHHAPDVY 128
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 28.6 bits (63), Expect = 0.85
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 158 CTEALIKAKVKKVVVGMLDPNPIVNSKG-LERLRDAGIDV 196
CT + K + LDP P G ++ RDAGI V
Sbjct: 1 CTSVICSDKTGTLTTNQLDP-PRKEVMGSIQLCRDAGIRV 39
>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 128
Score = 27.7 bits (61), Expect = 1.4
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 197 TVGVEDELCKRLNEAFIHRIVTGKPFATLRYTLSVNGHVLDQLGEGVAESG 247
+ E AF VTG+P + L G + + + V + G
Sbjct: 71 VISAETHHMAVDYNAFEGMKVTGEPVSVL-----CRGEFVVRDKQFVGKPG 116
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 102
Score = 26.6 bits (59), Expect = 2.3
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 202 DELCKRLNEAFIHRIVTG----KPFATLR 226
EL RL ++VTG K A LR
Sbjct: 68 TELKARLPSEVAEKLVTGPSLEKSIAPLR 96
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 26.8 bits (59), Expect = 4.6
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 159 TEALIKAKVKKVVVGMLDPNPIVNSKGLERLRDA----------GIDVTVGVEDELCKRL 208
+ + +V G+LD + V+ +E++ A D+ L L
Sbjct: 78 VRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTL-NNL 136
Query: 209 NEAFIHRIVT 218
E I R++T
Sbjct: 137 AELGIARVLT 146
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 24.7 bits (54), Expect = 5.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 304 ESSSKVIVFTDGEI-----TVEPDMGTKGIETVNLHQLN---LKAVLDYCYSH 348
+SS I D EI T++ + G++ V L +N LK V+ +C H
Sbjct: 6 QSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHH 58
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 25.9 bits (56), Expect = 6.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 368 LKEGIEQNLLQKIVVEVLP 386
L GI Q ++KI E +P
Sbjct: 155 LTSGISQKQMRKIFEENIP 173
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,598,806
Number of extensions: 77530
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 17
Length of query: 427
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,199,356
Effective search space: 406581684
Effective search space used: 406581684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)