Query 014312
Match_columns 427
No_of_seqs 188 out of 1365
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0676 Actin and related prot 100.0 8.5E-90 1.8E-94 652.6 27.4 368 4-422 5-372 (372)
2 PTZ00452 actin; Provisional 100.0 1.2E-88 2.7E-93 666.7 36.2 371 6-422 5-375 (375)
3 PTZ00466 actin-like protein; P 100.0 1.7E-87 3.7E-92 659.2 35.7 372 3-422 9-380 (380)
4 PTZ00280 Actin-related protein 100.0 1.4E-85 3.1E-90 655.7 37.5 400 6-425 4-413 (414)
5 PTZ00281 actin; Provisional 100.0 1.1E-85 2.4E-90 647.6 35.0 371 6-422 6-376 (376)
6 PTZ00004 actin-2; Provisional 100.0 4E-84 8.7E-89 637.5 36.3 374 5-422 5-378 (378)
7 KOG0679 Actin-related protein 100.0 2.2E-82 4.8E-87 584.1 26.3 372 5-421 10-425 (426)
8 KOG0677 Actin-related protein 100.0 5.7E-82 1.2E-86 552.8 22.1 385 1-420 1-386 (389)
9 PF00022 Actin: Actin; InterP 100.0 1.5E-77 3.3E-82 597.0 25.6 366 5-422 3-393 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 9E-76 2E-80 579.8 35.5 370 7-422 2-373 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.2E-73 2.7E-78 564.0 34.7 371 8-420 1-371 (371)
12 KOG0678 Actin-related protein 100.0 5E-74 1.1E-78 517.3 18.3 409 6-427 4-415 (415)
13 KOG0680 Actin-related protein 100.0 1E-71 2.2E-76 501.6 25.3 376 4-422 1-399 (400)
14 COG5277 Actin and related prot 100.0 1.5E-71 3.2E-76 547.5 28.4 376 6-422 6-444 (444)
15 KOG0681 Actin-related protein 100.0 3.4E-58 7.3E-63 439.2 22.0 380 5-424 22-642 (645)
16 KOG0797 Actin-related protein 100.0 1.2E-43 2.7E-48 337.1 17.4 388 5-423 32-616 (618)
17 PRK13930 rod shape-determining 100.0 9.7E-38 2.1E-42 304.2 21.4 317 5-395 8-327 (335)
18 PRK13927 rod shape-determining 100.0 6.4E-37 1.4E-41 298.1 19.9 313 8-395 7-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 2.1E-33 4.6E-38 273.0 21.1 318 9-395 5-326 (333)
20 PRK13929 rod-share determining 100.0 1.8E-32 3.9E-37 266.1 25.0 289 8-349 6-303 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.3E-29 5E-34 239.2 20.1 314 8-395 3-320 (326)
22 PRK13928 rod shape-determining 100.0 3.2E-29 7E-34 243.9 20.5 315 8-395 5-322 (336)
23 COG1077 MreB Actin-like ATPase 99.9 3.2E-22 7E-27 183.5 17.1 299 6-349 6-308 (342)
24 TIGR02529 EutJ ethanolamine ut 99.7 8.8E-16 1.9E-20 141.7 17.1 208 87-392 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.6 1.6E-14 3.5E-19 135.6 18.9 211 86-394 54-267 (267)
26 CHL00094 dnaK heat shock prote 99.5 7.3E-13 1.6E-17 138.9 19.8 246 95-396 110-376 (621)
27 TIGR02350 prok_dnaK chaperone 99.4 7.4E-12 1.6E-16 131.1 19.3 227 120-395 131-371 (595)
28 PTZ00186 heat shock 70 kDa pre 99.4 1.1E-11 2.4E-16 129.8 20.3 204 120-349 161-378 (657)
29 PTZ00400 DnaK-type molecular c 99.4 1.8E-11 3.9E-16 129.0 21.6 200 120-348 175-391 (663)
30 TIGR01991 HscA Fe-S protein as 99.4 6.5E-12 1.4E-16 131.1 17.8 218 98-348 107-336 (599)
31 PLN03184 chloroplast Hsp70; Pr 99.4 1.8E-11 3.9E-16 129.1 19.2 223 94-348 146-389 (673)
32 PRK00290 dnaK molecular chaper 99.4 2.3E-11 5E-16 128.0 19.2 223 120-395 134-373 (627)
33 PRK13411 molecular chaperone D 99.4 1.3E-11 2.8E-16 129.9 16.6 204 120-348 134-351 (653)
34 PRK13410 molecular chaperone D 99.3 2.2E-11 4.8E-16 128.1 17.0 199 120-348 136-352 (668)
35 PRK01433 hscA chaperone protei 99.3 3.1E-11 6.7E-16 125.4 17.6 187 120-348 142-332 (595)
36 PTZ00009 heat shock 70 kDa pro 99.3 4.8E-11 1E-15 125.8 17.7 199 120-348 141-356 (653)
37 PRK05183 hscA chaperone protei 99.3 8.8E-11 1.9E-15 122.9 17.5 100 120-220 150-252 (616)
38 TIGR01174 ftsA cell division p 99.3 2.2E-10 4.8E-15 113.2 18.8 181 131-349 156-339 (371)
39 PRK09472 ftsA cell division pr 99.2 1.1E-09 2.4E-14 109.8 19.7 185 131-349 164-353 (420)
40 PF00012 HSP70: Hsp70 protein; 99.1 2E-09 4.3E-14 113.4 15.7 224 120-395 136-375 (602)
41 PRK11678 putative chaperone; P 99.0 1.9E-08 4.1E-13 101.1 18.9 93 120-214 150-260 (450)
42 COG0849 ftsA Cell division ATP 99.0 6.5E-08 1.4E-12 95.2 19.4 205 141-396 172-380 (418)
43 TIGR01175 pilM type IV pilus a 98.7 3.2E-06 7E-11 82.9 22.0 161 130-349 140-307 (348)
44 PRK13917 plasmid segregation p 98.7 2.8E-06 6.2E-11 82.8 19.5 205 8-221 4-234 (344)
45 TIGR03739 PRTRC_D PRTRC system 98.6 1.2E-06 2.6E-11 84.7 16.8 200 11-220 2-215 (320)
46 COG0443 DnaK Molecular chapero 98.6 2.3E-06 5E-11 88.8 17.8 195 6-220 5-223 (579)
47 PF11104 PilM_2: Type IV pilus 98.5 4.2E-06 9.1E-11 81.8 16.8 191 97-349 86-299 (340)
48 PF06406 StbA: StbA protein; 97.7 0.00027 5.9E-09 68.3 9.9 116 104-220 81-213 (318)
49 COG4820 EutJ Ethanolamine util 97.6 3.4E-05 7.3E-10 67.0 2.4 188 86-348 59-250 (277)
50 KOG0104 Molecular chaperones G 97.5 0.0026 5.7E-08 65.6 14.9 100 120-220 159-276 (902)
51 KOG0101 Molecular chaperones H 97.4 0.0056 1.2E-07 63.0 15.7 97 120-217 144-245 (620)
52 KOG0100 Molecular chaperones G 97.3 0.0064 1.4E-07 58.5 13.9 96 121-217 174-273 (663)
53 PRK10719 eutA reactivating fac 97.1 0.0023 5E-08 63.6 9.0 132 86-224 53-207 (475)
54 TIGR00241 CoA_E_activ CoA-subs 96.9 0.032 7E-07 51.9 14.8 45 173-217 92-137 (248)
55 COG4972 PilM Tfp pilus assembl 96.9 0.0046 9.9E-08 58.2 8.5 118 174-349 195-312 (354)
56 TIGR03286 methan_mark_15 putat 96.1 0.03 6.5E-07 55.0 8.9 48 324-395 355-402 (404)
57 KOG0103 Molecular chaperones H 95.9 0.61 1.3E-05 48.4 17.6 100 119-220 137-247 (727)
58 PF06277 EutA: Ethanolamine ut 94.9 0.2 4.4E-06 50.1 10.1 135 86-224 50-204 (473)
59 PRK11031 guanosine pentaphosph 94.3 0.72 1.6E-05 47.5 12.9 87 123-212 81-170 (496)
60 KOG0102 Molecular chaperones m 93.3 0.77 1.7E-05 46.4 10.5 117 121-238 162-284 (640)
61 TIGR03706 exo_poly_only exopol 93.2 0.88 1.9E-05 43.6 10.6 90 119-213 72-164 (300)
62 PRK10854 exopolyphosphatase; P 92.7 1.3 2.9E-05 45.8 11.7 86 123-211 86-174 (513)
63 COG0248 GppA Exopolyphosphatas 89.9 1.3 2.9E-05 45.2 8.2 80 131-213 86-168 (492)
64 PF14450 FtsA: Cell division p 89.8 1.4 2.9E-05 35.9 6.8 57 175-242 2-69 (120)
65 TIGR02261 benz_CoA_red_D benzo 86.7 0.32 7E-06 45.2 1.4 50 326-394 213-262 (262)
66 TIGR03123 one_C_unchar_1 proba 86.0 13 0.00028 35.8 11.8 27 171-197 127-153 (318)
67 PF01869 BcrAD_BadFG: BadF/Bad 84.8 2.9 6.4E-05 39.2 6.9 48 328-394 224-271 (271)
68 COG1521 Pantothenate kinase ty 82.3 20 0.00044 33.2 11.0 19 8-26 2-20 (251)
69 PRK13324 pantothenate kinase; 81.3 32 0.0007 32.1 12.1 19 8-26 2-20 (258)
70 PF01968 Hydantoinase_A: Hydan 80.9 1.7 3.8E-05 41.3 3.7 26 171-196 76-101 (290)
71 PRK13317 pantothenate kinase; 79.8 1.1 2.5E-05 42.2 2.0 51 324-395 222-273 (277)
72 TIGR02259 benz_CoA_red_A benzo 79.5 0.9 2E-05 44.6 1.2 52 324-394 381-432 (432)
73 TIGR03192 benz_CoA_bzdQ benzoy 79.2 0.7 1.5E-05 43.7 0.4 50 323-395 238-287 (293)
74 COG1924 Activator of 2-hydroxy 78.6 1.4 3E-05 42.7 2.2 44 328-395 346-389 (396)
75 PF08841 DDR: Diol dehydratase 78.1 13 0.00029 34.7 8.2 97 131-238 93-190 (332)
76 COG4819 EutA Ethanolamine util 75.8 25 0.00054 33.8 9.4 155 88-245 54-238 (473)
77 COG1548 Predicted transcriptio 74.8 2.6 5.7E-05 38.7 2.8 23 171-193 129-151 (330)
78 TIGR00671 baf pantothenate kin 72.6 43 0.00093 30.9 10.4 18 9-26 2-19 (243)
79 PF02541 Ppx-GppA: Ppx/GppA ph 72.3 6.1 0.00013 37.4 4.9 87 124-213 62-151 (285)
80 PRK13321 pantothenate kinase; 71.4 64 0.0014 29.9 11.4 18 9-26 3-20 (256)
81 PRK13318 pantothenate kinase; 69.4 60 0.0013 30.1 10.8 18 8-25 2-19 (258)
82 COG2441 Predicted butyrate kin 68.8 8.5 0.00018 35.8 4.6 47 172-218 163-213 (374)
83 PF03309 Pan_kinase: Type III 68.2 62 0.0013 28.9 10.2 18 9-26 2-19 (206)
84 PRK13326 pantothenate kinase; 66.5 82 0.0018 29.5 10.9 19 8-26 8-26 (262)
85 PF08735 DUF1786: Putative pyr 53.5 62 0.0013 30.0 7.4 61 134-195 128-190 (254)
86 PF14450 FtsA: Cell division p 51.5 8.9 0.00019 31.1 1.5 22 8-29 1-22 (120)
87 PF03702 UPF0075: Uncharacteri 48.8 14 0.0003 36.3 2.7 25 325-349 285-309 (364)
88 smart00842 FtsA Cell division 45.1 68 0.0015 28.1 6.3 22 89-110 36-57 (187)
89 cd08627 PI-PLCc_gamma1 Catalyt 41.3 52 0.0011 30.0 4.9 45 99-149 74-118 (229)
90 TIGR00744 ROK_glcA_fam ROK fam 40.3 3E+02 0.0066 26.0 10.6 59 137-197 88-148 (318)
91 cd08626 PI-PLCc_beta4 Catalyti 40.2 52 0.0011 30.6 4.8 45 99-149 76-120 (257)
92 cd08630 PI-PLCc_delta3 Catalyt 40.1 53 0.0011 30.6 4.8 45 99-149 74-118 (258)
93 cd08596 PI-PLCc_epsilon Cataly 39.6 54 0.0012 30.4 4.8 44 99-148 74-117 (254)
94 cd08632 PI-PLCc_eta1 Catalytic 39.4 56 0.0012 30.3 4.8 45 99-149 74-118 (253)
95 TIGR03367 queuosine_QueD queuo 38.8 41 0.00089 25.8 3.4 50 91-147 42-91 (92)
96 cd08629 PI-PLCc_delta1 Catalyt 38.7 56 0.0012 30.4 4.8 44 99-148 74-117 (258)
97 COG4012 Uncharacterized protei 38.5 1.9E+02 0.004 27.1 7.9 43 152-195 208-250 (342)
98 cd08595 PI-PLCc_zeta Catalytic 38.1 58 0.0013 30.3 4.8 44 99-148 74-117 (257)
99 cd08594 PI-PLCc_eta Catalytic 37.6 62 0.0013 29.5 4.8 44 99-148 74-117 (227)
100 cd08631 PI-PLCc_delta4 Catalyt 37.4 59 0.0013 30.2 4.7 44 99-148 74-117 (258)
101 cd08593 PI-PLCc_delta Catalyti 37.2 59 0.0013 30.2 4.7 44 99-148 74-117 (257)
102 PRK09557 fructokinase; Reviewe 36.6 48 0.001 31.5 4.3 59 137-197 87-147 (301)
103 cd08633 PI-PLCc_eta2 Catalytic 36.5 65 0.0014 29.9 4.8 45 99-149 74-118 (254)
104 cd08592 PI-PLCc_gamma Catalyti 36.1 66 0.0014 29.4 4.7 45 99-149 74-118 (229)
105 cd08591 PI-PLCc_beta Catalytic 36.0 65 0.0014 29.9 4.8 45 99-149 76-120 (257)
106 cd08598 PI-PLC1c_yeast Catalyt 34.7 71 0.0015 29.2 4.7 44 99-148 74-117 (231)
107 PRK05082 N-acetylmannosamine k 34.0 47 0.001 31.3 3.7 58 138-197 88-146 (291)
108 PRK13310 N-acetyl-D-glucosamin 33.2 46 0.001 31.6 3.6 59 137-197 87-147 (303)
109 cd08597 PI-PLCc_PRIP_metazoa C 32.4 78 0.0017 29.6 4.7 45 99-149 74-118 (260)
110 cd08558 PI-PLCc_eukaryota Cata 31.6 86 0.0019 28.6 4.7 45 99-149 74-118 (226)
111 PRK09585 anmK anhydro-N-acetyl 30.6 49 0.0011 32.6 3.2 23 326-348 288-310 (365)
112 cd08628 PI-PLCc_gamma2 Catalyt 29.8 96 0.0021 28.8 4.8 45 99-149 74-118 (254)
113 cd08623 PI-PLCc_beta1 Catalyti 28.4 1E+02 0.0022 28.7 4.7 45 99-149 76-121 (258)
114 cd08624 PI-PLCc_beta2 Catalyti 27.8 1E+02 0.0022 28.8 4.6 45 99-149 76-121 (261)
115 PF14824 Sirohm_synth_M: Siroh 27.6 1E+02 0.0022 18.3 3.0 21 329-351 9-29 (30)
116 COG0145 HyuA N-methylhydantoin 26.3 64 0.0014 34.6 3.4 23 174-196 280-302 (674)
117 KOG1386 Nucleoside phosphatase 24.9 6.7E+02 0.014 25.8 9.9 134 9-205 12-198 (501)
118 PLN02223 phosphoinositide phos 24.6 1.3E+02 0.0027 31.3 5.0 45 99-148 179-223 (537)
119 cd08625 PI-PLCc_beta3 Catalyti 24.0 1.2E+02 0.0026 28.2 4.4 44 99-148 76-120 (258)
120 PF09693 Phage_XkdX: Phage unc 23.6 38 0.00083 21.5 0.7 15 397-411 19-34 (40)
121 TIGR00039 6PTHBS 6-pyruvoyl te 23.0 88 0.0019 25.5 3.0 52 91-147 44-95 (124)
122 PF12401 DUF3662: Protein of u 22.0 19 0.00041 29.1 -1.2 72 340-418 29-100 (116)
123 TIGR00744 ROK_glcA_fam ROK fam 21.7 98 0.0021 29.5 3.6 40 305-351 239-279 (318)
124 TIGR01669 phage_XkdX phage unc 20.6 49 0.0011 21.8 0.8 15 397-411 24-39 (45)
125 cd08599 PI-PLCc_plant Catalyti 20.5 2E+02 0.0043 26.3 4.9 37 116-153 85-121 (228)
No 1
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=8.5e-90 Score=652.63 Aligned_cols=368 Identities=39% Similarity=0.681 Sum_probs=338.4
Q ss_pred CCCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCC
Q 014312 4 TSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSST 83 (427)
Q Consensus 4 ~~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 83 (427)
+...+||+|+||..+|+||||++.|+.++||.++++++. ....+...++.++|+++...+
T Consensus 5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~---------------~~~~~~~~~~~~vg~~a~~~~----- 64 (372)
T KOG0676|consen 5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQ---------------GVMAGMTQKDTYVGDEAESKR----- 64 (372)
T ss_pred CCcceEEEECCCceeecccCCCCCCceecceeccccccc---------------cccccccccccccchhhhccc-----
Confidence 567899999999999999999999999999999987532 223345577889999998865
Q ss_pred cEEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhh
Q 014312 84 YNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAA 163 (427)
Q Consensus 84 ~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~ 163 (427)
.++||++||.|.|||+|+.||+|+|++.|+++|++||++++|++++|+.+||+|+|+|||.||+|++|+..++++ |+
T Consensus 65 -~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya 141 (372)
T KOG0676|consen 65 -TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YA 141 (372)
T ss_pred -cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999777666 99
Q ss_pred ccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcc
Q 014312 164 GYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYT 243 (427)
Q Consensus 164 ~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v 243 (427)
+| .+||+|||+|++.|+++||++|+++++++.++++||+++|+||+..|.++++.+....+.++++++||++||+
T Consensus 142 ~g-----~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyv 216 (372)
T KOG0676|consen 142 SG-----RTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYV 216 (372)
T ss_pred cC-----CeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhccc
Confidence 98 8899999999999999999999999999999999999999999999999988887778889999999999999
Q ss_pred cccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHH
Q 014312 244 CSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRA 323 (427)
Q Consensus 244 ~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~ 323 (427)
+.|+.+|+.. ..........|.+|| |+ .+.+++|||.+||+||+|+..+.+ ..+|++++.++|.+||+|+|+.
T Consensus 217 ald~~~e~~~-~~~~~~l~~~y~lPD---g~--~i~i~~erf~~pE~lFqP~~~g~e-~~gi~~~~~~sI~kcd~dlrk~ 289 (372)
T KOG0676|consen 217 ALDFEEEEET-ANTSSSLESSYELPD---GQ--KITIGNERFRCPEVLFQPSLLGME-SPGIHELTVNSIMKCDIDLRKD 289 (372)
T ss_pred ccccchhhhc-ccccccccccccCCC---CC--EEecCCcccccchhcCChhhcCCC-CCchhHHHHHHHHhCChhHhHH
Confidence 9999999887 322234455688887 87 699999999999999999999998 5899999999999999999999
Q ss_pred hhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccc
Q 014312 324 LYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAAC 403 (427)
Q Consensus 324 l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~ 403 (427)
||+||||+||+|++|||.+||++||+.+. |+..+++|++++++.+++|+||||+|||++|+++|
T Consensus 290 L~~nivLsGGtT~~pGl~~Rl~kEl~~l~----------------P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~w 353 (372)
T KOG0676|consen 290 LYENIVLSGGTTMFPGLADRLQKELQALA----------------PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMW 353 (372)
T ss_pred HHhheEEeCCcccchhHHHHHHHHHhhcC----------------CCCcceEEecCcccccceecCceeEeecchHhhcc
Confidence 99999999999999999999999999886 55778999999999999999999999999999999
Q ss_pred cchHHHhhcCcceeeecCC
Q 014312 404 HTKAEYEEYGASICRSNPV 422 (427)
Q Consensus 404 itk~eY~e~G~~~~~~~~~ 422 (427)
|||+||+|+|++++|||||
T Consensus 354 itk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 354 ITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred ccHHHHhhhCCceeeeccC
Confidence 9999999999999999995
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.2e-88 Score=666.69 Aligned_cols=371 Identities=31% Similarity=0.549 Sum_probs=336.4
Q ss_pred CCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcE
Q 014312 6 RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYN 85 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 85 (427)
.++||||+||+++|+||||++.|++++||++|+++.... ..+....++++|+++..... .++
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~---------------~~~~~~~~~~iG~~~~~~~~---~~~ 66 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDG---------------IFSTFNKEYYVGEEAQAKRG---VLA 66 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccc---------------cccccccceEEChhhhcccc---CcE
Confidence 458999999999999999999999999999999853210 00111346899999877555 499
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhcc
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGY 165 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g 165 (427)
+++|+++|.|.|||++|.+|+|+|.+.|+++|+++|++++|++++++..|++++|+|||.|++|+++++++++|++|++|
T Consensus 67 l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g 146 (375)
T PTZ00452 67 IKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG 146 (375)
T ss_pred EcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccc
Q 014312 166 TTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCS 245 (427)
Q Consensus 166 ~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 245 (427)
++||||||+|++.|+|+||+||++++++++++++||+++|++|.++|.++++.+....+.++++++||++|||+.
T Consensus 147 -----~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 221 (375)
T PTZ00452 147 -----KTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTAL 221 (375)
T ss_pred -----CceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccC
Confidence 789999999999999999999999999999999999999999999999998877665677899999999999999
Q ss_pred cHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhh
Q 014312 246 DIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALY 325 (427)
Q Consensus 246 d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~ 325 (427)
|+.++.+..... ......|++|| |+ .+.++.|||.+||+||+|++++.+ ..||+++|.++|++||+|+|+.|+
T Consensus 222 d~~~e~~~~~~~-~~~~~~y~LPD---g~--~i~l~~er~~~~E~LF~P~~~g~~-~~gi~~~i~~si~~c~~d~r~~L~ 294 (375)
T PTZ00452 222 DPQDEKRIYKES-NSQDSPYKLPD---GN--ILTIKSQKFRCSEILFQPKLIGLE-VAGIHHLAYSSIKKCDLDLRQELC 294 (375)
T ss_pred cHHHHHHHhhcc-CCcCceEECCC---CC--EEEeehHHhcCcccccChhhcCCC-CCChhHHHHHHHHhCCHhHHHHhh
Confidence 998877644321 12345799988 77 889999999999999999998887 479999999999999999999999
Q ss_pred cCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccccc
Q 014312 326 KNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHT 405 (427)
Q Consensus 326 ~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~it 405 (427)
+||||+||+|++|||.+||++||++++ |...+++|.++++|++++|+||||+|++++|+++|||
T Consensus 295 ~nIvL~GG~Sl~~Gf~~RL~~El~~~~----------------p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vt 358 (375)
T PTZ00452 295 RNIVLSGGTTLFPGIANRLSNELTNLV----------------PSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIK 358 (375)
T ss_pred ccEEEecccccccCHHHHHHHHHHHhC----------------CCCceeEEecCCCcceeEEECchhhcCccchhhhEeE
Confidence 999999999999999999999999987 3455788998999999999999999999999999999
Q ss_pred hHHHhhcCcceeeecCC
Q 014312 406 KAEYEEYGASICRSNPV 422 (427)
Q Consensus 406 k~eY~e~G~~~~~~~~~ 422 (427)
|+||+|+|+++++|||+
T Consensus 359 k~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 359 RQEYDEQGPSIVHRKCF 375 (375)
T ss_pred HHHHhccCcceeeeecC
Confidence 99999999999999984
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.7e-87 Score=659.15 Aligned_cols=372 Identities=34% Similarity=0.619 Sum_probs=336.9
Q ss_pred CCCCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCC
Q 014312 3 PTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSS 82 (427)
Q Consensus 3 ~~~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 82 (427)
+|+..+||||+||+++|+||||++.|++++||++|+++... ...+....++++|+++...+.
T Consensus 9 ~~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~---------------~~~~~~~~~~~vG~~~~~~~~--- 70 (380)
T PTZ00466 9 LYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKR---------------VMAGAVEGNIFVGNKAEEYRG--- 70 (380)
T ss_pred hccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCcc---------------ccccCCCCCeEECchhhhhCc---
Confidence 57788999999999999999999999999999999985321 011122446899999887655
Q ss_pred CcEEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 83 TYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 83 ~~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
.+.+++|+++|.|.|||.+|.+|+|+| +.|+++++++|++++|++++++..|++++|+|||.|++|+++++++++||+|
T Consensus 71 ~~~l~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~ 149 (380)
T PTZ00466 71 LLKVTYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLY 149 (380)
T ss_pred CceeCccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHH
Confidence 388999999999999999999999997 7899999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCc
Q 014312 163 AGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCY 242 (427)
Q Consensus 163 ~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~ 242 (427)
++| .+||+|||+|++.|+|+||+||+++.++++++++||++++++|+++|++++..+....+.++++++||++||
T Consensus 150 a~g-----~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~ 224 (380)
T PTZ00466 150 SCG-----KTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCY 224 (380)
T ss_pred hcC-----CceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeE
Confidence 998 789999999999999999999999999999999999999999999999988777666678899999999999
Q ss_pred ccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHH
Q 014312 243 TCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRR 322 (427)
Q Consensus 243 v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~ 322 (427)
|+.|+.++...... ......|++|| |. .+.++.|||.+||+||+|++++.+ ..||+++|.++|.+||+|+|+
T Consensus 225 v~~d~~~e~~~~~~--~~~~~~y~LPd---g~--~i~l~~er~~~~E~LF~P~~~g~~-~~gl~~~i~~sI~~c~~d~r~ 296 (380)
T PTZ00466 225 VSFNMNKEKNSSEK--ALTTLPYILPD---GS--QILIGSERYRAPEVLFNPSILGLE-YLGLSELIVTSITRADMDLRR 296 (380)
T ss_pred ecCChHHHHhhccc--cccceeEECCC---Cc--EEEEchHHhcCcccccCccccCCC-CCCHHHHHHHHHHhCChhhHH
Confidence 99998877654321 12346799988 76 889999999999999999999888 579999999999999999999
Q ss_pred HhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeeccccccccc
Q 014312 323 ALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAA 402 (427)
Q Consensus 323 ~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~ 402 (427)
.|++||||+||+|++|||.+||++||++++ |...+++|..+++|++++|+||||+|++++|+++
T Consensus 297 ~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~----------------p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~ 360 (380)
T PTZ00466 297 TLYSHIVLSGGTTMFHGFGDRLLNEIRKFA----------------PKDITIRISAPPERKFSTFIGGSILASLATFKKI 360 (380)
T ss_pred HHhhcEEEeCCccccCCHHHHHHHHHHHhC----------------CCCceEEEecCCCCceeEEECchhhcCccchhhh
Confidence 999999999999999999999999999986 4456788998999999999999999999999999
Q ss_pred ccchHHHhhcCcceeeecCC
Q 014312 403 CHTKAEYEEYGASICRSNPV 422 (427)
Q Consensus 403 ~itk~eY~e~G~~~~~~~~~ 422 (427)
||||+||+|+|+++++||++
T Consensus 361 ~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 361 WISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred EeEHHHHhhhCcHhheeecC
Confidence 99999999999999999974
No 4
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.4e-85 Score=655.75 Aligned_cols=400 Identities=61% Similarity=1.104 Sum_probs=353.5
Q ss_pred CCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcE
Q 014312 6 RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYN 85 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 85 (427)
.++||||+||+++||||||++.|++++||++++++.... .....+....++++|+++..... .+.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~------------~~~~~~~~~~~~~vG~ea~~~~~---~~~ 68 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSR------------RRSKKGFEDLDFYIGDEALAASK---SYT 68 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccc------------cccccccccCCEEEcchhhhCcC---CcE
Confidence 558999999999999999999999999999999753110 00001112346899999988765 489
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhc-
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAG- 164 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~- 164 (427)
+++|+++|.|.|||.+|.+|+|+|++.|++++.++|++++||+++++..|++++|+|||.|++|+++++.+++||+|++
T Consensus 69 l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~ 148 (414)
T PTZ00280 69 LTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASW 148 (414)
T ss_pred EecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------cCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 014312 165 ---------YTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARK 235 (427)
Q Consensus 165 ---------g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 235 (427)
| .+||||||+|++.|+|+||+||+++.++++++++||++++++|.++|++++..+......+++++
T Consensus 149 ~~~~~~~~~g-----~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~ 223 (414)
T PTZ00280 149 TSKKAKELGG-----TLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQR 223 (414)
T ss_pred ccccccccCC-----ceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 6 78999999999999999999999999999999999999999999999998887766566789999
Q ss_pred hhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHh
Q 014312 236 VKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQS 315 (427)
Q Consensus 236 iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~ 315 (427)
+||++||++.|+.++++.++.++......|.++++.+|+++.++++.|||.+||+||+|++++.+...+|+++|.++|++
T Consensus 224 iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~ 303 (414)
T PTZ00280 224 IKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQS 303 (414)
T ss_pred HHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHh
Confidence 99999999999998888765444345567899888778888999999999999999999988766456999999999999
Q ss_pred CChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 316 APIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 316 ~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
||+|+|+.|++||+|+||+|++|||.+||++||+++++.+...+...+|+..+|...+++|.+++++++++|+||||+|+
T Consensus 304 ~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas 383 (414)
T PTZ00280 304 CPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLAS 383 (414)
T ss_pred CChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhccc
Confidence 99999999999999999999999999999999999986655444443444344667789999988999999999999999
Q ss_pred cccccccccchHHHhhcCcceeeecCCCCC
Q 014312 396 TPEFFAACHTKAEYEEYGASICRSNPVFKG 425 (427)
Q Consensus 396 l~~f~~~~itk~eY~e~G~~~~~~~~~~~~ 425 (427)
+++|+++||||+||+|+|+++++|+..|.+
T Consensus 384 ~~~f~~~~itk~eY~E~G~~i~~~~~~~~~ 413 (414)
T PTZ00280 384 SPEFEKVCHTKAEYDEYGPSICRYNNVFHS 413 (414)
T ss_pred CcchhhheEEHHHHhccChHheeecccccC
Confidence 999999999999999999999999987764
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.1e-85 Score=647.57 Aligned_cols=371 Identities=36% Similarity=0.646 Sum_probs=335.5
Q ss_pred CCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcE
Q 014312 6 RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYN 85 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 85 (427)
.++||||+||+++|+||||++.|++++||++++++... ...+....+.++|+++..... .+.
T Consensus 6 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~---~~~ 67 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTG---------------VMVGMGQKDSYVGDEAQSKRG---ILT 67 (376)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcc---------------cccCcccCCeEECchhhcccc---CcE
Confidence 45899999999999999999999999999999875321 011122456899999876544 489
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhcc
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGY 165 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g 165 (427)
+++|+++|.|.|||+++.+|+|+|++.|+++|+++||+++||+++++..|++++|+|||.|++|+++++++++|++|++|
T Consensus 68 l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g 147 (376)
T PTZ00281 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147 (376)
T ss_pred EeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccc
Q 014312 166 TTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCS 245 (427)
Q Consensus 166 ~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 245 (427)
++||||||+|++.|+|+||+||+++.++++++++||++++++|+++|.+++..+....+.+++++|||++|||+.
T Consensus 148 -----~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 222 (376)
T PTZ00281 148 -----RTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVAL 222 (376)
T ss_pred -----CceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecC
Confidence 789999999999999999999999999999999999999999999999988877666678899999999999999
Q ss_pred cHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhh
Q 014312 246 DIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALY 325 (427)
Q Consensus 246 d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~ 325 (427)
|+..+++..... ......|.+|| |+ .+.++.|||.+||+||+|++++.+ ..+|+++|.++|.+||+|+|+.|+
T Consensus 223 d~~~~~~~~~~~-~~~~~~y~LPd---g~--~i~i~~er~~~~E~LF~P~~~~~~-~~gi~~~i~~sI~~~~~d~r~~L~ 295 (376)
T PTZ00281 223 DFEAEMQTAASS-SALEKSYELPD---GQ--VITIGNERFRCPEALFQPSFLGME-SAGIHETTYNSIMKCDVDIRKDLY 295 (376)
T ss_pred CchHHHHhhhcC-cccceeEECCC---CC--EEEeeHHHeeCcccccChhhcCCC-CCCHHHHHHHHHHhCChhHHHHHH
Confidence 988777644322 23345799987 76 899999999999999999998877 579999999999999999999999
Q ss_pred cCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccccc
Q 014312 326 KNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHT 405 (427)
Q Consensus 326 ~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~it 405 (427)
+||||+||+|+||||.+||++||++++ |...+++|..+++|++++|+||||+|++++|+++|||
T Consensus 296 ~nIvl~GG~s~~~Gf~~RL~~El~~~~----------------p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vt 359 (376)
T PTZ00281 296 GNVVLSGGTTMFPGIADRMNKELTALA----------------PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 359 (376)
T ss_pred hhccccCccccCcCHHHHHHHHHHHhC----------------CCCcceEEecCCCCceeEEECcccccCcccHhhceee
Confidence 999999999999999999999999987 4456788998889999999999999999999999999
Q ss_pred hHHHhhcCcceeeecCC
Q 014312 406 KAEYEEYGASICRSNPV 422 (427)
Q Consensus 406 k~eY~e~G~~~~~~~~~ 422 (427)
|+||+|+|+++++||++
T Consensus 360 k~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 360 KEEYDESGPSIVHRKCF 376 (376)
T ss_pred HHHHhhhCchheeeecC
Confidence 99999999999999974
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=4e-84 Score=637.46 Aligned_cols=374 Identities=37% Similarity=0.672 Sum_probs=336.0
Q ss_pred CCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCc
Q 014312 5 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTY 84 (427)
Q Consensus 5 ~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 84 (427)
+.++||||+||+++|+||||++.|++++||++++++.... ..+......++|+++..... .+
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~---~~ 66 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGI---------------MVGMEEKDCYVGDEAQDKRG---IL 66 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEeccccc---------------ccCcCCCceEECchhhcccc---cc
Confidence 4668999999999999999999999999999999853210 01122446889999876544 48
Q ss_pred EEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhc
Q 014312 85 NLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAG 164 (427)
Q Consensus 85 ~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~ 164 (427)
.+++|+++|.|.|||.++.+|+|+|.+.|++++.++||++++++++++..|++++|+|||.|++|+++++++++|++|++
T Consensus 67 ~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~ 146 (378)
T PTZ00004 67 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYAS 146 (378)
T ss_pred eEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCccc
Q 014312 165 YTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTC 244 (427)
Q Consensus 165 g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~ 244 (427)
| ++||+|||+|++.|+|+||+||+++.++++++++||++++++|+++|.+++..+....+.++++++||++|||+
T Consensus 147 g-----~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~ 221 (378)
T PTZ00004 147 G-----RTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIA 221 (378)
T ss_pred C-----CceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeec
Confidence 8 78999999999999999999999999999999999999999999999999887766667889999999999999
Q ss_pred ccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHh
Q 014312 245 SDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRAL 324 (427)
Q Consensus 245 ~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l 324 (427)
.|+.+++......+......|.+|| |+ .+.++.|||.+||+||+|++++.+...||+++|.++|.+||+|+|+.|
T Consensus 222 ~d~~~~~~~~~~~~~~~~~~y~lPd---g~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L 296 (378)
T PTZ00004 222 LDFDEEMGNSAGSSDKYEESYELPD---GT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDL 296 (378)
T ss_pred CCHHHHHhhhhcCccccceEEECCC---CC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHH
Confidence 9998887654322222346799988 77 889999999999999999988766347999999999999999999999
Q ss_pred hcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeeccccccccccc
Q 014312 325 YKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACH 404 (427)
Q Consensus 325 ~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~i 404 (427)
++||||+||+|++|||.+||++||++++ |...+++|..+++|++++|+||||+|++++|+++||
T Consensus 297 ~~nIvl~GG~s~~~Gf~~RL~~EL~~~~----------------p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~v 360 (378)
T PTZ00004 297 YGNIVLSGGTTMYRGLPERLTKELTTLA----------------PSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWV 360 (378)
T ss_pred HhhEEeccchhcCcCHHHHHHHHHHHhC----------------CCCccEEEecCCCCceeEEECcccccCccchhhhEe
Confidence 9999999999999999999999999987 344578888888999999999999999999999999
Q ss_pred chHHHhhcCcceeeecCC
Q 014312 405 TKAEYEEYGASICRSNPV 422 (427)
Q Consensus 405 tk~eY~e~G~~~~~~~~~ 422 (427)
||+||+|+|+++++||++
T Consensus 361 tk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 361 TKEEYDESGPSIVHRKCF 378 (378)
T ss_pred EHHHHhhhCcceEEeecC
Confidence 999999999999999974
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.2e-82 Score=584.09 Aligned_cols=372 Identities=30% Similarity=0.518 Sum_probs=312.7
Q ss_pred CCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCc
Q 014312 5 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTY 84 (427)
Q Consensus 5 ~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 84 (427)
+.++||||+||+++|+||||++.|.+++||++|......+. . ...+.++++.+++..++. +.
T Consensus 10 Ev~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d---------------~-~~~~~~y~~~~ai~~pr~--gm 71 (426)
T KOG0679|consen 10 EVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD---------------A-EDKKGYYVDENAIHVPRP--GM 71 (426)
T ss_pred ccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc---------------c-ccccceEeechhccCCCC--CC
Confidence 46799999999999999999999999999999975322110 0 112347999999998887 79
Q ss_pred EEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhc
Q 014312 85 NLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAG 164 (427)
Q Consensus 85 ~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~ 164 (427)
++..|+++|.|.|||.++.+|+|.|.++|+++|.+||+|++||++++++.|++++|+|||++++|++|++.+++|++||.
T Consensus 72 Ev~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~ 151 (426)
T KOG0679|consen 72 EVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFAN 151 (426)
T ss_pred eeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchH--------------
Q 014312 165 YTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSF-------------- 230 (427)
Q Consensus 165 g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~-------------- 230 (427)
| +.||||||||++.|+|+||+||+++++++++.++||++|+..++++|...++.+.+....
T Consensus 152 G-----rstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~ 226 (426)
T KOG0679|consen 152 G-----RSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANA 226 (426)
T ss_pred C-----CCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchh
Confidence 9 789999999999999999999999999999999999999999999999988765432111
Q ss_pred ---HHHHHhhhhcCcccc-cHHHHHh----hc-----cCCCc--cccceeeccCCCCCCceEEeecceeeecccccccCC
Q 014312 231 ---EVARKVKEMYCYTCS-DIVKEYN----KH-----DKEPS--KYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPE 295 (427)
Q Consensus 231 ---~~~~~iKe~~c~v~~-d~~~e~~----~~-----~~~~~--~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~ 295 (427)
...+++++.+++... -..+|++ .. ++.+. -..++|++|+ |. ..++|.|||++||.||+|+
T Consensus 227 ~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~---g~--~~~~G~er~ripe~lF~Ps 301 (426)
T KOG0679|consen 227 VLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPD---GY--TLDFGAERFRIPEYLFKPS 301 (426)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCC---Cc--ccccCcceeecchhhcCcc
Confidence 112233333332211 1112221 11 11111 1235678877 75 8899999999999999999
Q ss_pred CCCC-----------CCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccC
Q 014312 296 IYSS-----------DFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLG 364 (427)
Q Consensus 296 ~~~~-----------~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~ 364 (427)
.... +...|+++++.+||..||+|+|..|++|||||||+|+|+||.+||++||+.++|
T Consensus 302 ~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P----------- 370 (426)
T KOG0679|consen 302 LVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAP----------- 370 (426)
T ss_pred hhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCC-----------
Confidence 7532 234589999999999999999999999999999999999999999999999873
Q ss_pred CccCCCCeeEEEecCC---CccceeeecceeecccccccccccchHHHhhcCc-ceeeecC
Q 014312 365 GEVKAQPVEVNVVSHA---IQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGA-SICRSNP 421 (427)
Q Consensus 365 ~~~~~~~~~v~v~~~~---~~~~~~W~Ggsilasl~~f~~~~itk~eY~e~G~-~~~~~~~ 421 (427)
.. ++++++.. +|++++|+||||||||++|+++||+|+||||.|. +.+.|||
T Consensus 371 -----~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 371 -----SS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred -----cc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 33 78888743 7999999999999999999999999999999999 8888887
No 8
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=5.7e-82 Score=552.82 Aligned_cols=385 Identities=35% Similarity=0.587 Sum_probs=345.5
Q ss_pred CCCCCCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCC
Q 014312 1 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRS 80 (427)
Q Consensus 1 ~~~~~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 80 (427)
|| +.++||+|+|++++|+||||+..|.+++|+.+|+|--.+.. ...+..-+|..||+++-..+..
T Consensus 1 Md--~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e-------------~~g~~~iKD~mvGdeaselRs~ 65 (389)
T KOG0677|consen 1 MD--SRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEE-------------KVGNIEIKDLMVGDEASELRSL 65 (389)
T ss_pred CC--CCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhh-------------hccCeehhhheccchHHHHHHH
Confidence 55 57899999999999999999999999999999998322110 1112446789999999998886
Q ss_pred CCCcEEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhh
Q 014312 81 SSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLA 160 (427)
Q Consensus 81 ~~~~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~la 160 (427)
+++.||+++|.|.|||+|+.+|+|.|.++|+++|.+..++++|||++|.++||+|+|+|||+++|.++|++.+++++
T Consensus 66 ---L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLt 142 (389)
T KOG0677|consen 66 ---LDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLT 142 (389)
T ss_pred ---HhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhc
Q 014312 161 LAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMY 240 (427)
Q Consensus 161 l~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~ 240 (427)
+||.| ..||+|||.|.+.|+|+||++|++++|-.+|++++|+++|.||.++|..+|+.++...+++.++++||++
T Consensus 143 LYAQG-----L~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKL 217 (389)
T KOG0677|consen 143 LYAQG-----LLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKL 217 (389)
T ss_pred HHHhc-----ccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhh
Confidence 99999 7899999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhh
Q 014312 241 CYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDT 320 (427)
Q Consensus 241 c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~ 320 (427)
||++.|++.|.+...+. .-....|++|| |+ +|.++.|||.+||+||+|.+++-+ ..|+.+++.++|+..|+|.
T Consensus 218 CYisYd~e~e~kLalET-TvLv~~YtLPD---GR--vIkvG~ERFeAPE~LFqP~Li~VE-~~G~aellF~~iQaaDiD~ 290 (389)
T KOG0677|consen 218 CYISYDLELEQKLALET-TVLVESYTLPD---GR--VIKVGGERFEAPEALFQPHLINVE-GPGVAELLFNTIQAADIDI 290 (389)
T ss_pred eeEeechhhhhHhhhhh-eeeeeeeecCC---Cc--EEEecceeccCchhhcCcceeccC-CCcHHHHHHHHHHHhccch
Confidence 99999998876654432 23457899998 87 999999999999999999999988 5899999999999999999
Q ss_pred HHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeeccc-ccc
Q 014312 321 RRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAST-PEF 399 (427)
Q Consensus 321 r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl-~~f 399 (427)
|..+|++|+|+||+++.||+..||++||+++.-.+.- -|++-+...+++++-++|.|.+..|+||+++|++ ..-
T Consensus 291 R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL-----~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~ 365 (389)
T KOG0677|consen 291 RSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVL-----KGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDK 365 (389)
T ss_pred HHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHH-----cCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCC
Confidence 9999999999999999999999999999998643321 1222234567888888999999999999999995 667
Q ss_pred cccccchHHHhhcCcceeeec
Q 014312 400 FAACHTKAEYEEYGASICRSN 420 (427)
Q Consensus 400 ~~~~itk~eY~e~G~~~~~~~ 420 (427)
+++|+||+||+|.|..++.+.
T Consensus 366 d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 366 DEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred ccceecHHHHHhhhHHHHHhh
Confidence 799999999999999988764
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.5e-77 Score=596.98 Aligned_cols=366 Identities=38% Similarity=0.659 Sum_probs=313.0
Q ss_pred CCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCc
Q 014312 5 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTY 84 (427)
Q Consensus 5 ~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 84 (427)
+.++||||+||+++|+||||++.|++++||+++++.... ...++++|++++.... ..
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~--------------------~~~~~~~g~~~~~~~~---~~ 59 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKN--------------------SSNDYYVGDEALSPRS---NL 59 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSS--------------------SSSSCEETHHHHHTGT---GE
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccc--------------------cceeEEeecccccchh---he
Confidence 467999999999999999999999999999999985321 1226789998665333 58
Q ss_pred EEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhc
Q 014312 85 NLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAG 164 (427)
Q Consensus 85 ~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~ 164 (427)
.+++|+++|.+.|||.++.+|+|+|.+.|++++++++|+|++|+++++..|++++|+|||+|++|+++++++++||+|++
T Consensus 60 ~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~ 139 (393)
T PF00022_consen 60 ELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYAS 139 (393)
T ss_dssp EEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHT
T ss_pred eeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCC-----------------CCc
Q 014312 165 YTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENV-----------------PPE 227 (427)
Q Consensus 165 g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~-----------------~~~ 227 (427)
| .+||||||+|++.|+|+||+||+++.++++++++||++++++|+++|++++..+ ...
T Consensus 140 g-----~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (393)
T PF00022_consen 140 G-----RTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNS 214 (393)
T ss_dssp T-----BSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSH
T ss_pred c-----cccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccch
Confidence 9 889999999999999999999999999999999999999999999999975432 112
Q ss_pred chHHHHHHhhhhcCcccccHHHH-HhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCC-----
Q 014312 228 DSFEVARKVKEMYCYTCSDIVKE-YNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDF----- 301 (427)
Q Consensus 228 ~~~~~~~~iKe~~c~v~~d~~~e-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~----- 301 (427)
.+..+++++|+++|+++.+...+ ..... ......|.+|| |+ .+.++.||+.+||+||+|+..+.+.
T Consensus 215 ~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~lPd---g~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~ 286 (393)
T PF00022_consen 215 DDEEIVEEIKEECCYVSEDPDEEQEEQAS---ENPEKSYELPD---GQ--TIILGKERFRIPEILFNPSLIGIDSASEPS 286 (393)
T ss_dssp HHHHHHHHHHHHHHSGGSSHHHHHHHHHC---STTTEEEE-TT---SS--EEEESTHHHHHHHTTTSGGGGTSSSTS---
T ss_pred hhhccchhccchhhhcccccccccccccc---cccceeccccc---cc--cccccccccccccccccccccccccccccc
Confidence 35678999999999999987741 11111 13446788887 76 8899999999999999999887652
Q ss_pred -CCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCC
Q 014312 302 -TTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHA 380 (427)
Q Consensus 302 -~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 380 (427)
..+|+++|.++|++||+|+|+.|++||||+||+|++|||.+||++||..+. |...+++|...+
T Consensus 287 ~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~----------------~~~~~~~v~~~~ 350 (393)
T PF00022_consen 287 EFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLL----------------PSSTKVKVIAPP 350 (393)
T ss_dssp SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHS----------------GTTSTEEEE--T
T ss_pred ccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhh----------------hccccceeccCc
Confidence 138999999999999999999999999999999999999999999999975 345578899888
Q ss_pred -CccceeeecceeecccccccccccchHHHhhcCcceeeecCC
Q 014312 381 -IQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPV 422 (427)
Q Consensus 381 -~~~~~~W~Ggsilasl~~f~~~~itk~eY~e~G~~~~~~~~~ 422 (427)
+|.+++|+||||+|++++|+++||||+||+|+|+++++|||+
T Consensus 351 ~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 351 SDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp -TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred hhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999999999999999999984
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=9e-76 Score=579.85 Aligned_cols=370 Identities=43% Similarity=0.735 Sum_probs=330.5
Q ss_pred CcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcEE
Q 014312 7 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNL 86 (427)
Q Consensus 7 ~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 86 (427)
++||||+||+++|+||+|++.|++++||++++++..... . .....+++|+++..... ...+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~---------------~-~~~~~~~~G~~a~~~~~---~~~~ 62 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGM---------------V-GDAKDTFVGDEAQEKRG---GLEL 62 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccc---------------c-CCCcceEecchhhhcCC---Ccee
Confidence 589999999999999999999999999999997432100 0 01346799999866544 3689
Q ss_pred eCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccC
Q 014312 87 SYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYT 166 (427)
Q Consensus 87 ~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~ 166 (427)
++|+++|.|.|||.++.+|+|+|.+.|++++.++++++++|.++++..|++++|++||.|++|++++++++++|+|++|
T Consensus 63 ~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g- 141 (373)
T smart00268 63 KYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG- 141 (373)
T ss_pred cCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-
Confidence 9999999999999999999999998999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCccccc
Q 014312 167 TSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSD 246 (427)
Q Consensus 167 ~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d 246 (427)
.++|+|||+|++.|+|+||+||+++.++++++++||++++++|.++|+.++..+....+.++++++|+++||++.+
T Consensus 142 ----~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~ 217 (373)
T smart00268 142 ----RTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAED 217 (373)
T ss_pred ----CCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCC
Confidence 7899999999999999999999999999999999999999999999998665555456678999999999999999
Q ss_pred HHHHHhhccCC--CccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHh
Q 014312 247 IVKEYNKHDKE--PSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRAL 324 (427)
Q Consensus 247 ~~~e~~~~~~~--~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l 324 (427)
+.++++..... +......|.+|+ |+ .+.++.||+.+||+||+|+..+.+ ..+|+++|.++|++||+|+|+.|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~lpd---g~--~~~~~~er~~~~E~lf~p~~~~~~-~~~i~~~i~~~i~~~~~d~r~~l 291 (373)
T smart00268 218 FEKEMKKARESSESSKLEKTYELPD---GN--TIKVGNERFRIPEILFKPELIGLE-QKGIHELVYESIQKCDIDVRKDL 291 (373)
T ss_pred hHHHHHHhhhcccccccceeEECCC---CC--EEEEChHHeeCchhcCCchhcCCC-cCCHHHHHHHHHHhCCHhHHHHH
Confidence 88877654321 123345788877 76 788899999999999999988877 57999999999999999999999
Q ss_pred hcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeeccccccccccc
Q 014312 325 YKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACH 404 (427)
Q Consensus 325 ~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~i 404 (427)
++||+||||+|++|||.+||++||++++ |...++++..++++++++|+||||+|++++|+++||
T Consensus 292 ~~nIvltGG~s~i~Gl~~RL~~el~~~~----------------p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~v 355 (373)
T smart00268 292 YENIVLSGGSTLIPGFGERLEKELKQLA----------------PKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWI 355 (373)
T ss_pred HhCeEeecccccCcCHHHHHHHHHHHhC----------------CCCceeEEecCCCCccceEeCcccccCccchhhhEE
Confidence 9999999999999999999999999987 334578888888999999999999999999999999
Q ss_pred chHHHhhcCcceeeecCC
Q 014312 405 TKAEYEEYGASICRSNPV 422 (427)
Q Consensus 405 tk~eY~e~G~~~~~~~~~ 422 (427)
||+||+|+|+++++|||+
T Consensus 356 tk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 356 TKKEYEEHGSQIVERKCF 373 (373)
T ss_pred EHHHHhhhCcceEEeecC
Confidence 999999999999999984
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.2e-73 Score=563.98 Aligned_cols=371 Identities=44% Similarity=0.738 Sum_probs=329.0
Q ss_pred cEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcEEe
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLS 87 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~ 87 (427)
+||||+||+++|+||+|++.|++++||++++++.... ..+.....+++|+++...... +++++
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~---------------~~~~~~~~~~~G~~a~~~~~~--~~~~~ 63 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSV---------------MVGAGDKDYFVGEEALEKRGL--GLELI 63 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccc---------------ccccCCCceEEchhhhhCCCC--ceEEc
Confidence 6899999999999999999999999999999753210 001124578999999877654 58999
Q ss_pred CcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCC
Q 014312 88 YPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTT 167 (427)
Q Consensus 88 ~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~ 167 (427)
+|+++|.+.||+.++.+|+|+|.+.|.+++.++++++++|+++++..|++++++|||.|+++++++++++++|+|++|
T Consensus 64 ~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g-- 141 (371)
T cd00012 64 YPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG-- 141 (371)
T ss_pred ccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccH
Q 014312 168 SKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDI 247 (427)
Q Consensus 168 ~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~ 247 (427)
.++|+|||+|++.|+|+||+||+++.+++.++++||++++++|.++|+.++..+....+..+++++||++||++.++
T Consensus 142 ---~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~ 218 (371)
T cd00012 142 ---RTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDI 218 (371)
T ss_pred ---CCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCH
Confidence 78999999999999999999999999999999999999999999999998876555567789999999999999998
Q ss_pred HHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcC
Q 014312 248 VKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKN 327 (427)
Q Consensus 248 ~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n 327 (427)
.++..............|.+|+ |+ .+.++.|||.+||+||+|+..+.. ..+|+++|.++|++||+|.|+.+++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~lpd---~~--~i~~~~er~~~~E~lF~p~~~~~~-~~~i~~~i~~~i~~~~~~~~~~l~~~ 292 (371)
T cd00012 219 EEEQDKSAKETSLLEKTYELPD---GR--TIKVGNERFRAPEILFNPSLIGSE-QVGISEAIYSSINKCDIDLRKDLYSN 292 (371)
T ss_pred HHHHHhhhccCCccceeEECCC---Ce--EEEEChHHhhChHhcCChhhcCCC-cCCHHHHHHHHHHhCCHhHHHHHHhC
Confidence 8765322222223446788877 65 889999999999999999988766 57999999999999999999999999
Q ss_pred eEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccccchH
Q 014312 328 IVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKA 407 (427)
Q Consensus 328 Iil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~itk~ 407 (427)
|+|+||+|++|||.+||++||..++|.. ....+++...++|.+++|+||||+|++++|+++||||+
T Consensus 293 Ivl~GG~s~~~gl~~rl~~el~~~~~~~--------------~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~ 358 (371)
T cd00012 293 IVLSGGSTLFPGFGERLQKELLKLAPPS--------------KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKE 358 (371)
T ss_pred EEEeCCccCCcCHHHHHHHHHHHhCCcc--------------cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHH
Confidence 9999999999999999999999987420 13456777778899999999999999999999999999
Q ss_pred HHhhcCcceeeec
Q 014312 408 EYEEYGASICRSN 420 (427)
Q Consensus 408 eY~e~G~~~~~~~ 420 (427)
||+|+|+++++||
T Consensus 359 eY~E~G~~~~~~k 371 (371)
T cd00012 359 EYEEHGPSIVHRK 371 (371)
T ss_pred HHhhhCchhEecC
Confidence 9999999999987
No 12
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=5e-74 Score=517.29 Aligned_cols=409 Identities=65% Similarity=1.117 Sum_probs=377.1
Q ss_pred CCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcE
Q 014312 6 RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYN 85 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 85 (427)
+.++|+|+|+.++|.||+|+..|++++|++++...... .|++++| ....+..+.++++|++++... .+.
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~----~s~~~~~---~~~~~~~dldf~ig~eal~~~----~ys 72 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAA----VSSKATR---RVKRGTEDLDFFIGDEALDAT----TYS 72 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccc----cccchhh---hhhccccccceecccHHHhhc----ccc
Confidence 33599999999999999999999999999999874322 2334444 334556788999999999833 489
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhcc
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGY 165 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g 165 (427)
+.+||++|.+.|||.||++|+++++++|+.+|++|-.||+||+++++++|+.++|++||.||+|.+|++.++++||.++.
T Consensus 73 l~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaasw 152 (415)
T KOG0678|consen 73 LKYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASW 152 (415)
T ss_pred cccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCC---CcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCc
Q 014312 166 TTSK---CEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCY 242 (427)
Q Consensus 166 ~~~~---~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~ 242 (427)
++.+ ..-||+|||.|.+.|+|+||.+|+++-+++..+|++|+++|...+++|++++..+++...++.++.+||++||
T Consensus 153 ts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy 232 (415)
T KOG0678|consen 153 TSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCY 232 (415)
T ss_pred HHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcc
Confidence 5532 4679999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred ccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHH
Q 014312 243 TCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRR 322 (427)
Q Consensus 243 v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~ 322 (427)
+++|+.+|+.+++.+|....++|...++.+|.++.++++-|||+.||++|+|.....+...+|++++...|+.||+|.|+
T Consensus 233 ~cPdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr 312 (415)
T KOG0678|consen 233 TCPDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRR 312 (415)
T ss_pred cCcHHHHHHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccch
Confidence 99999999999999998888888887777788899999999999999999999988887889999999999999999999
Q ss_pred HhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeeccccccccc
Q 014312 323 ALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAA 402 (427)
Q Consensus 323 ~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~ 402 (427)
.||+||+++||.+++++|..|+++++..+...+...++..+| +++....++++++...++++|-|||+|||.+.|.+.
T Consensus 313 ~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg--~k~~~vdvqvish~~qr~avwfggs~lastpef~~~ 390 (415)
T KOG0678|consen 313 PLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSG--IKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPA 390 (415)
T ss_pred hhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhccccc--CCCCCceeehhhhhhhhcceeccCccccCCcccccc
Confidence 999999999999999999999999999999888888888887 577888999999988899999999999999999999
Q ss_pred ccchHHHhhcCcceeeecCCCCCCC
Q 014312 403 CHTKAEYEEYGASICRSNPVFKGMY 427 (427)
Q Consensus 403 ~itk~eY~e~G~~~~~~~~~~~~~~ 427 (427)
+-||+||+|+|++|+++...|+.|+
T Consensus 391 ~~tk~~yee~g~si~r~~~~f~~~~ 415 (415)
T KOG0678|consen 391 CHTKEDYEEYGPSICRTNPVFGVMT 415 (415)
T ss_pred cCcchhhhhhChhhhhcCchhcccC
Confidence 9999999999999999999999985
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1e-71 Score=501.63 Aligned_cols=376 Identities=26% Similarity=0.405 Sum_probs=331.0
Q ss_pred CCCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCC
Q 014312 4 TSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSST 83 (427)
Q Consensus 4 ~~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 83 (427)
|+..+||||+|++++|+|+++++.|. ++|+++.+.+. +.++.++|++.-+..+. +.
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~----------------------~~rr~f~~nei~ec~D~-ss 56 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKF----------------------GRRRSFLANEIDECKDI-SS 56 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCce-eccchhhhccc----------------------ccchhhhhhhhhhccCc-cc
Confidence 56889999999999999999999997 88999988642 24567888887766654 37
Q ss_pred cEEeCcccCCccCCHHHHHHHHHHHHhhc-cCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 84 YNLSYPIRHGQVDNWDAMERYWQQCIFNY-LRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 84 ~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~-L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
+..++|+++|.+.+|+...++|+|+|.+. ++++..++.+++++|.++-++..+.+.|++||+|+|.+++-...+.++++
T Consensus 57 L~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~ 136 (400)
T KOG0680|consen 57 LFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAF 136 (400)
T ss_pred eEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcch
Confidence 89999999999999999999999999764 45777899999999999999999999999999999999999999998887
Q ss_pred h-ccCCCC-----CcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 014312 163 A-GYTTSK-----CEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKV 236 (427)
Q Consensus 163 ~-~g~~~~-----~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~i 236 (427)
- .-+.++ ...+++|||+|++.|+|+|+++|.+..++++|+++||+.||++|++.+..++.++- .+..+++++
T Consensus 137 ~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvm--dET~vVNei 214 (400)
T KOG0680|consen 137 TKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVM--DETYVVNEI 214 (400)
T ss_pred hhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhccc--chhhhhhhh
Confidence 6 222221 13479999999999999999999999999999999999999999999999988763 456789999
Q ss_pred hhhcCcccccHHHHHhhccCCCc--cccceeeccCCCCC--------------CceEEeecceeeecccccccCCCCCCC
Q 014312 237 KEMYCYTCSDIVKEYNKHDKEPS--KYLKQWRGIKPKTG--------------APYSCDIGYERFLGPEVFFNPEIYSSD 300 (427)
Q Consensus 237 Ke~~c~v~~d~~~e~~~~~~~~~--~~~~~~~~~~~~~g--------------~~~~i~i~~er~~~~E~LF~P~~~~~~ 300 (427)
||.+|||++|+.+++..+...+. .....|.+||-.++ .++.+.+++|||.+||+||+|+.++.+
T Consensus 215 KEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~ 294 (400)
T KOG0680|consen 215 KEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQ 294 (400)
T ss_pred hhheEEechhhHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcc
Confidence 99999999999998877655432 23456666653211 235899999999999999999999998
Q ss_pred CCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCC
Q 014312 301 FTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHA 380 (427)
Q Consensus 301 ~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 380 (427)
++||+++|.+||..||.++|+.|+.|||++||++++|||.+||.+||+.++ |.++.++|..+.
T Consensus 295 -q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~----------------P~d~~v~V~~p~ 357 (400)
T KOG0680|consen 295 -QPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLL----------------PADWEVSVSVPE 357 (400)
T ss_pred -cCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhC----------------CccceEEEecCC
Confidence 689999999999999999999999999999999999999999999999987 668899999988
Q ss_pred CccceeeecceeecccccccccccchHHHhhcCcceeeecCC
Q 014312 381 IQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPV 422 (427)
Q Consensus 381 ~~~~~~W~Ggsilasl~~f~~~~itk~eY~e~G~~~~~~~~~ 422 (427)
+|..-+|-||+-+|.+++|...||||+||+|+|++++.+|++
T Consensus 358 dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 358 DPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred CcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 999999999999999999999999999999999999999873
No 14
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.5e-71 Score=547.52 Aligned_cols=376 Identities=38% Similarity=0.654 Sum_probs=326.2
Q ss_pred CCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcE
Q 014312 6 RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYN 85 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 85 (427)
.++||||+||+++|+||||++.|++++|+++++.+.. ..........+.++|+++....+. ...+
T Consensus 6 ~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~--------------~~~~~~~~~~~~~v~ne~~~~~~~-~~~~ 70 (444)
T COG5277 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDE--------------DSVMEDTEEKDTYVGNEAQNDRDN-SLLE 70 (444)
T ss_pred CCeEEEeCCCceEEeeecCCCCceeeccccccccccc--------------ccccccccccccccCchhhhccCC-ccce
Confidence 3449999999999999999999999999999998510 011112335678899998887763 2589
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhh--ccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhh
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFN--YLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAA 163 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~--~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~ 163 (427)
+++|+++|.|.||++++++|+|+|++ .+...+.+||++++||++++.++|++++|++||.|++|+++++.+++|++|+
T Consensus 71 ~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya 150 (444)
T COG5277 71 LRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYA 150 (444)
T ss_pred eecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHh
Confidence 99999999999999999999999998 6888899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcc--eEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHh-----cCCCCCCc---chHHHH
Q 014312 164 GYTTSKCEM--TGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRE-----RGENVPPE---DSFEVA 233 (427)
Q Consensus 164 ~g~~~~~~~--tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~ 233 (427)
.| .. +|+|||+|++.|+|+||+||.++.++++++++||++++.+|+++|.. +++.+... .+.+++
T Consensus 151 ~g-----~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~ 225 (444)
T COG5277 151 SG-----SSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIV 225 (444)
T ss_pred cC-----CCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHH
Confidence 99 66 99999999999999999999999999999999999999999999999 55555544 568899
Q ss_pred HHhhhhcC-------cccccHHHHHhhccCCCc---------------cccceeeccCCCCCCceEEeecce-eeecccc
Q 014312 234 RKVKEMYC-------YTCSDIVKEYNKHDKEPS---------------KYLKQWRGIKPKTGAPYSCDIGYE-RFLGPEV 290 (427)
Q Consensus 234 ~~iKe~~c-------~v~~d~~~e~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~i~i~~e-r~~~~E~ 290 (427)
+.+|+++| |+..+..++++...+.+. .....+..|+ |+ .+.++.| ||.+||.
T Consensus 226 ~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~--~i~~~~e~rf~~pE~ 300 (444)
T COG5277 226 NEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPD---GE--EIEFGNEERFKAPEI 300 (444)
T ss_pred HHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCC---Cc--eEeechhhhhhcchh
Confidence 99999999 988877666554332111 1123344444 55 8899999 9999999
Q ss_pred cccCC--CCCCCC--------------------------CCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHH
Q 014312 291 FFNPE--IYSSDF--------------------------TTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHR 342 (427)
Q Consensus 291 LF~P~--~~~~~~--------------------------~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~e 342 (427)
||+|+ ..+.+. ..+|++++.++|+.||.+.|+.|++||+|+||+|++|||.+
T Consensus 301 lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~ 380 (444)
T COG5277 301 LFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAE 380 (444)
T ss_pred hcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHH
Confidence 99999 654431 23499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccccchHHHhhcCcceeeecCC
Q 014312 343 RLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPV 422 (427)
Q Consensus 343 RL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~itk~eY~e~G~~~~~~~~~ 422 (427)
||++||+.+. |....++|..+++|.+.+|+||||+|++++|.++||||+||+|+|++++++|++
T Consensus 381 Rl~~el~~~~----------------p~~~~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 381 RLQKELTSLA----------------PSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred HHHHHHHhhc----------------CCCCceeeecCCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 9999999986 445688999999999999999999999999999999999999999999999874
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=3.4e-58 Score=439.16 Aligned_cols=380 Identities=25% Similarity=0.418 Sum_probs=318.3
Q ss_pred CCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCc
Q 014312 5 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTY 84 (427)
Q Consensus 5 ~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 84 (427)
+..|||||+||+.+||||+|+..|+++|++++.++++.+-+ ..-.+||+........ +.
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~-------------------~s~t~vgnd~~~~~~~--Rs 80 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG-------------------ASVTLVGNDILNFQGV--RS 80 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc-------------------cccccccchhhhhhhh--hc
Confidence 45689999999999999999999999999999998643211 1122678777666554 46
Q ss_pred EEeCcccCCccCCHHHHHHHHHHHHhhccCCCCC--CceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 85 NLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE--DHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 85 ~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~--~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
..+.|+++.+|+||+.+|.+++|+| .+|+++++ +||+++||+.++|...|..|+|+|||.||+|+|.+...++.|+|
T Consensus 81 ~~rSPFd~nVvtNwel~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~ 159 (645)
T KOG0681|consen 81 SPRSPFDRNVVTNWELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFY 159 (645)
T ss_pred cCCCCCcCCccccHHHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHh
Confidence 6889999999999999999999987 78999874 89999999999999999999999999999999999999999998
Q ss_pred hccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCc
Q 014312 163 AGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCY 242 (427)
Q Consensus 163 ~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~ 242 (427)
..-..+. ..+|+||++||+.|+|+||.||..+...+.|+++||.+...||.+||..+++-++...++..++.++..+||
T Consensus 160 hN~~~~~-~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcy 238 (645)
T KOG0681|consen 160 HNYGKSS-NKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCY 238 (645)
T ss_pred hccCccc-CcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhce
Confidence 5432211 338999999999999999999999999999999999999999999999998877778888999999999999
Q ss_pred ccccHHHHHhhc---------------------------------------------------cC---------------
Q 014312 243 TCSDIVKEYNKH---------------------------------------------------DK--------------- 256 (427)
Q Consensus 243 v~~d~~~e~~~~---------------------------------------------------~~--------------- 256 (427)
++.||..|.... .+
T Consensus 239 is~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~k 318 (645)
T KOG0681|consen 239 ISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNK 318 (645)
T ss_pred eCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 998876532110 00
Q ss_pred ---------C-----C----------------------------------------------------------------
Q 014312 257 ---------E-----P---------------------------------------------------------------- 258 (427)
Q Consensus 257 ---------~-----~---------------------------------------------------------------- 258 (427)
+ |
T Consensus 319 aq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~ 398 (645)
T KOG0681|consen 319 AQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLE 398 (645)
T ss_pred hhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -------------------------------------------------cc-----------------------------
Q 014312 259 -------------------------------------------------SK----------------------------- 260 (427)
Q Consensus 259 -------------------------------------------------~~----------------------------- 260 (427)
+.
T Consensus 399 ~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~ 478 (645)
T KOG0681|consen 399 KLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLN 478 (645)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHH
Confidence 00
Q ss_pred --------ccceee--ccCCCCC-------CceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHH
Q 014312 261 --------YLKQWR--GIKPKTG-------APYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRA 323 (427)
Q Consensus 261 --------~~~~~~--~~~~~~g-------~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~ 323 (427)
.+..|. ..||.+| +.+.+.++.||+++||++|+|+++|.+ +.||.+++..++.+.|.|.+..
T Consensus 479 ~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~d-QaGl~Ei~~~il~r~p~~eq~~ 557 (645)
T KOG0681|consen 479 HELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGID-QAGLAEIMDTILRRYPHDEQEK 557 (645)
T ss_pred HHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccch-hhhHHHHHHHHHHhCchhhhHh
Confidence 000000 0011111 124567899999999999999999999 7899999999999999999999
Q ss_pred hhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccc
Q 014312 324 LYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAAC 403 (427)
Q Consensus 324 l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~ 403 (427)
|.+||+||||+|++||+.+||.+||.... |-...++|....+|...||.||+.+|...+|..-|
T Consensus 558 lV~nVllTGG~s~~pGmkeRi~kElt~mr----------------P~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~ 621 (645)
T KOG0681|consen 558 LVSNVLLTGGCSQLPGMKERIKKELTSMR----------------PVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQ 621 (645)
T ss_pred hhhheEeecccccCcCHHHHHHHHhheec----------------ccCCceEEEecCCcchhhhhhhHHhhcCcccchhh
Confidence 99999999999999999999999999875 55567889988999999999999999999999999
Q ss_pred cchHHHhhcCcceeeecCCCC
Q 014312 404 HTKAEYEEYGASICRSNPVFK 424 (427)
Q Consensus 404 itk~eY~e~G~~~~~~~~~~~ 424 (427)
+||+||+|+|++.++.++.=+
T Consensus 622 ~Tr~dy~E~G~e~~kEh~~~n 642 (645)
T KOG0681|consen 622 ITRKDYEEKGEEYLKEHVASN 642 (645)
T ss_pred hhHHhhhhhhHHHHHHHhhcc
Confidence 999999999999988776543
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-43 Score=337.05 Aligned_cols=388 Identities=20% Similarity=0.262 Sum_probs=297.2
Q ss_pred CCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchh------------------------------hh
Q 014312 5 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKA------------------------------NW 54 (427)
Q Consensus 5 ~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~------------------------------~~ 54 (427)
..+.+|+|+||.+.|+|.|.+..|. ..|.++++......++++-..+ +|
T Consensus 32 d~k~ivih~gsqnlrig~a~d~np~-tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~ef~~~lll~~s~lss~ 110 (618)
T KOG0797|consen 32 DAKLIVIHLGSQNLRIGLAMDENPF-TVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAEFLKILLLDESSLSSS 110 (618)
T ss_pred CCCeeEecCCcchhhccccccCCCc-ccccceeecccCchhhhcccCcCCCccccccccccchhhhhHHHHHhhhhhhhH
Confidence 3568999999999999999999996 8899999874433322210000 00
Q ss_pred --------------------h-----hhhccCCC--CC----------------CCeEEccccccccCCCCCcEEeCccc
Q 014312 55 --------------------L-----AQYNAGVM--AD----------------LDFFIGDEAVTKSRSSSTYNLSYPIR 91 (427)
Q Consensus 55 --------------------~-----~~~~~~~~--~~----------------~~~~vg~~~~~~~~~~~~~~~~~Pi~ 91 (427)
+ +..+.+.. .. .+...|.++.++. .+.+++||+
T Consensus 111 ~~~kk~ri~v~~~~q~lkn~n~~S~aetvP~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i~----~y~l~~Pir 186 (618)
T KOG0797|consen 111 ASRKKGRIDVYNQAQTLKNDNVASPAETVPDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKIS----PYCLYHPIR 186 (618)
T ss_pred HHhhcCcccccCchHHhhcccccCccccCCCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcCC----cceeecccc
Confidence 0 00000000 00 1223456666655 489999999
Q ss_pred CCccCC----------HHHHHHHHHHHHhhccCCCCC---CceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhh
Q 014312 92 HGQVDN----------WDAMERYWQQCIFNYLRCDPE---DHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSV 158 (427)
Q Consensus 92 ~G~i~d----------~~~~e~i~~~~l~~~L~~~~~---~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~ 158 (427)
+|.++- .+++++||+|++.+.|++.++ ++.+|++.|....+..-++++.++|-+++|.++.++++++
T Consensus 187 ~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESl 266 (618)
T KOG0797|consen 187 RGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESL 266 (618)
T ss_pred cceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhh
Confidence 998753 467899999999999999874 6899999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCC-----CCCcchHHHH
Q 014312 159 LALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGEN-----VPPEDSFEVA 233 (427)
Q Consensus 159 lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~-----~~~~~~~~~~ 233 (427)
+++|+.| .+++||||||+..|+|+||-||.+++++..++++||++|++.|..+|++.+.. +....++.++
T Consensus 267 aatfGaG-----lss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl 341 (618)
T KOG0797|consen 267 AATFGAG-----LSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLL 341 (618)
T ss_pred HHHhcCC-----ccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHH
Confidence 9999999 78999999999999999999999999999999999999999999999987763 4456789999
Q ss_pred HHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCC------------
Q 014312 234 RKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDF------------ 301 (427)
Q Consensus 234 ~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~------------ 301 (427)
+++||++|....+...-.. ..-.+.-|++. -..|++.++.|..++|-.||.|.+++...
T Consensus 342 ~~LKe~Fc~l~~a~~~vQ~--------~~F~~R~pn~~-~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~ 412 (618)
T KOG0797|consen 342 NQLKEKFCHLRAAELGVQL--------TVFSYREPNPP-TLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQP 412 (618)
T ss_pred HHHHHHhccccHhhhhhhh--------hhhhccCCCCc-ceeeeeeccchhhccchhhhhhhhhhccccccccccccCCC
Confidence 9999999987654221100 00111122221 12356677778888888888887642110
Q ss_pred --------------------------------------------------------------------------------
Q 014312 302 -------------------------------------------------------------------------------- 301 (427)
Q Consensus 302 -------------------------------------------------------------------------------- 301 (427)
T Consensus 413 d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~ 492 (618)
T KOG0797|consen 413 DREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNK 492 (618)
T ss_pred CcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcc
Confidence
Q ss_pred ----------CCChHHHHHHHHHhC-ChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCC
Q 014312 302 ----------TTPLPAVIDKCIQSA-PIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQ 370 (427)
Q Consensus 302 ----------~~~l~~~i~~~i~~~-~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~ 370 (427)
...+.+.|..+|..| ..|.+++|++.|.++||..++||+.+.|++.+....|. . +..
T Consensus 493 ~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp-~-----------~~~ 560 (618)
T KOG0797|consen 493 KGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPP-G-----------REA 560 (618)
T ss_pred cceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCc-c-----------ccc
Confidence 012445577777776 56889999999999999999999999999988876542 0 011
Q ss_pred CeeEEEecCC---CccceeeecceeecccccccccccchHHHhhcCcceeeecCCC
Q 014312 371 PVEVNVVSHA---IQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVF 423 (427)
Q Consensus 371 ~~~v~v~~~~---~~~~~~W~Ggsilasl~~f~~~~itk~eY~e~G~~~~~~~~~~ 423 (427)
-..|.|+.++ ++++-+|.||+|||.++.-.++||++.||+-+|..+++.|+.|
T Consensus 561 I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~f 616 (618)
T KOG0797|consen 561 IDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKYF 616 (618)
T ss_pred cCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcccc
Confidence 2357777765 7899999999999999999999999999999999999999987
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=9.7e-38 Score=304.21 Aligned_cols=317 Identities=20% Similarity=0.224 Sum_probs=244.0
Q ss_pred CCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCC-CCC
Q 014312 5 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRS-SST 83 (427)
Q Consensus 5 ~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~ 83 (427)
+.. ++||+||.++|+|++++. +.+..||+++.... .....++|++|...... ..+
T Consensus 8 ~~~-vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~----------------------~~~~~~vG~~A~~~~~~~~~~ 63 (335)
T PRK13930 8 SKD-IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTK----------------------TGKVLAVGEEAKEMLGRTPGN 63 (335)
T ss_pred ccc-eEEEcCCCcEEEEECCCC-EEEecCCEEEEECC----------------------CCeEEEEcHHHHHhhhcCCCC
Confidence 444 999999999999999775 56778999998631 12357899999876431 235
Q ss_pred cEEeCcccCCccCCHHHHHHHHHHHHhhccCCCC-CCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 84 YNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDP-EDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 84 ~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~-~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
+.+++|+++|.|.||+.++.+|+|++.+.+...+ ..+++++++|...+...|+.+.+ +||.+|++.++++++|++|+|
T Consensus 64 ~~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~ 142 (335)
T PRK13930 64 IEAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAI 142 (335)
T ss_pred eEEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHH
Confidence 8899999999999999999999999965545333 36789999999888888877776 799999999999999999999
Q ss_pred hccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCc
Q 014312 163 AGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCY 242 (427)
Q Consensus 163 ~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~ 242 (427)
++|.......+++|||+|++.|+++||.+|.++. ....++||+++|+.+.+++..+. .+ ....+.++++|+++|+
T Consensus 143 a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~ 217 (335)
T PRK13930 143 GAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGS 217 (335)
T ss_pred hcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhc
Confidence 9985322235789999999999999999999875 45689999999999999987652 12 1345789999999999
Q ss_pred ccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHH
Q 014312 243 TCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRR 322 (427)
Q Consensus 243 v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~ 322 (427)
+..+...+. ......+...|.+..+.++.+++. |++|.| ..++.+.|.++|++|+.+.+.
T Consensus 218 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~--e~i~~~-------~~~i~~~i~~~l~~~~~~~~~ 277 (335)
T PRK13930 218 AYPLDEEES-----------MEVRGRDLVTGLPKTIEISSEEVR--EALAEP-------LQQIVEAVKSVLEKTPPELAA 277 (335)
T ss_pred CcCCCCCce-----------EEEECccCCCCCCeeEEECHHHHH--HHHHHH-------HHHHHHHHHHHHHhCCHHHhh
Confidence 876522110 001111111233446677777663 888887 247999999999999999999
Q ss_pred HhhcC-eEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 323 ALYKN-IVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 323 ~l~~n-Iil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
.++.| |+|+||+|++|||.+||++++.. ++.+ ..+|..+.=+|+++++.
T Consensus 278 ~~~~~~IvL~GG~s~ipg~~~~l~~~~~~----------------------~v~~--~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 278 DIIDRGIVLTGGGALLRGLDKLLSEETGL----------------------PVHI--AEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHhCCEEEECchhcchhHHHHHHHHHCC----------------------Ccee--cCCHHHHHHHHHHHHHh
Confidence 99998 99999999999999999998841 1222 33456677789888874
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=6.4e-37 Score=298.15 Aligned_cols=313 Identities=18% Similarity=0.186 Sum_probs=241.4
Q ss_pred cEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCC-CCCcEE
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRS-SSTYNL 86 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~ 86 (427)
.|+||+||.++|+|++|++. .+.+||+++.++.. ...+++|++|...... ..++.+
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~----------------------~~~~~vG~~a~~~~~~~~~~~~~ 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT----------------------KKVLAVGEEAKQMLGRTPGNIVA 63 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC----------------------CeEEEecHHHHHHhhcCCCCEEE
Confidence 69999999999999999877 57899999997420 2347899999876421 136889
Q ss_pred eCcccCCccCCHHHHHHHHHHHHhhccCCCCCCce-eEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhcc
Q 014312 87 SYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHY-FLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGY 165 (427)
Q Consensus 87 ~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~-vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g 165 (427)
.+|+++|.|.||+.++.+|++++.+.++. +.++| ++++.| .++...++++++.+||.+|++.++++++|++|++++|
T Consensus 64 ~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g 141 (334)
T PRK13927 64 IRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAG 141 (334)
T ss_pred EecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcC
Confidence 99999999999999999999999887776 65664 555555 6677778889999999999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCCceEEEEe-ecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCccc
Q 014312 166 TTSKCEMTGVVVDVGDGATYVVPV-AEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTC 244 (427)
Q Consensus 166 ~~~~~~~tglVVDiG~~~t~v~pV-~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~ 244 (427)
.......+++|||+|++.|+++|+ ++|.+..+.+ ++||+++|+.|.+++.++. .+. .+.+.++++|+++|++.
T Consensus 142 ~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~---~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~ 215 (334)
T PRK13927 142 LPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKSV---RVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAY 215 (334)
T ss_pred CcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCCc---CChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccC
Confidence 543223567999999999999999 8887766554 7999999999999987542 121 34568999999999876
Q ss_pred ccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHh
Q 014312 245 SDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRAL 324 (427)
Q Consensus 245 ~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l 324 (427)
.+.... ......++...+.+..+.++.++|. |++|.| ..++.+.|.++|++|+.++++.+
T Consensus 216 ~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~--e~i~~~-------~~~i~~~i~~~l~~~~~~~~~~~ 275 (334)
T PRK13927 216 PGDEVL-----------EMEVRGRDLVTGLPKTITISSNEIR--EALQEP-------LSAIVEAVKVALEQTPPELAADI 275 (334)
T ss_pred CCCCCc-----------eEEEeCcccCCCCCeEEEECHHHHH--HHHHHH-------HHHHHHHHHHHHHHCCchhhhhh
Confidence 431100 0011111111244456778777774 888887 24799999999999999999999
Q ss_pred hcC-eEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 325 YKN-IVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 325 ~~n-Iil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
+++ |+|+||+|++|||.+||++++.. ++++ ..+|..+.=.||++++.
T Consensus 276 ~~~~IvL~GG~s~ipgl~~~l~~~~~~----------------------~v~~--~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 276 VDRGIVLTGGGALLRGLDKLLSEETGL----------------------PVHV--AEDPLTCVARGTGKALE 323 (334)
T ss_pred hcCCEEEECchhhhhHHHHHHHHHHCC----------------------CcEe--cCCHHHHHHHHHHHHHh
Confidence 975 99999999999999999998841 2222 34456778889988864
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.1e-33 Score=273.02 Aligned_cols=318 Identities=18% Similarity=0.193 Sum_probs=236.5
Q ss_pred EEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCC-CCCcEEe
Q 014312 9 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRS-SSTYNLS 87 (427)
Q Consensus 9 vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~~ 87 (427)
+=||+||.++++-..+. .-.+..||+++...... +....-+++|++|...... ..++.++
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~------------------~~~~~~~~vG~~A~~~~~~~~~~~~~~ 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD------------------AKTKSILAVGHEAKEMLGKTPGNIVAI 65 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC------------------CCCCeEEEEhHHHHHhhhcCCCCEEEE
Confidence 78999999999865443 23456789998863210 0112347899999886322 2468999
Q ss_pred CcccCCccCCHHHHHHHHHHHHhhccCCCCCCc-eeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccC
Q 014312 88 YPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDH-YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYT 166 (427)
Q Consensus 88 ~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~-~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~ 166 (427)
+|+++|.|.||+.++.+|+|++.+.++.....+ ++++++|..++...|+. ++.+||.+|++.++++++|++|+|++|.
T Consensus 66 ~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~ 144 (333)
T TIGR00904 66 RPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGL 144 (333)
T ss_pred ecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCC
Confidence 999999999999999999999988765432223 69999999999988887 6668999999999999999999999985
Q ss_pred CCCCcceEEEEEcCCCceEEEEe-ecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccc
Q 014312 167 TSKCEMTGVVVDVGDGATYVVPV-AEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCS 245 (427)
Q Consensus 167 ~~~~~~tglVVDiG~~~t~v~pV-~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 245 (427)
......+++|||+|++.|++++| ++|.++...+ ++||+++|+.|.+++.++. .. ..+.+.++++|+++|++..
T Consensus 145 ~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~---~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~ 218 (333)
T TIGR00904 145 PVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSI---RVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYP 218 (333)
T ss_pred cccCCceEEEEEcCCCeEEEEEEEeCCEEecCCc---cchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhcccc
Confidence 32224678999999999999999 8887776544 7999999999999887542 11 2346789999999998765
Q ss_pred cHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhh
Q 014312 246 DIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALY 325 (427)
Q Consensus 246 d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~ 325 (427)
+..++.. . .....+...+.+..+.++.+ .++|++|.| ..++.+.|.+++++|+.+.+..++
T Consensus 219 ~~~~~~~-~---------~~~~~~~~~~~~~~~~i~~~--~~~e~i~~~-------~~~i~~~i~~~l~~~~~~~~~~l~ 279 (333)
T TIGR00904 219 LNDEPRK-M---------EVRGRDLVTGLPRTIEITSV--EVREALQEP-------VNQIVEAVKRTLEKTPPELAADIV 279 (333)
T ss_pred ccccccc-e---------eecCccccCCCCeEEEECHH--HHHHHHHHH-------HHHHHHHHHHHHHhCCchhhhhhc
Confidence 4211100 0 00000000122224455544 567999988 347999999999999999999999
Q ss_pred c-CeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 326 K-NIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 326 ~-nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
+ +|+|+||+|++|||.+||++++.. ++ ....+|..+.=.||++++.
T Consensus 280 ~~~IvL~GGss~ipgl~e~l~~~~~~----------------------~v--~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 280 ERGIVLTGGGALLRNLDKLLSKETGL----------------------PV--IVADDPLLCVAKGTGKALE 326 (333)
T ss_pred cCCEEEECcccchhhHHHHHHHHHCC----------------------Cc--eecCChHHHHHHHHHHHHh
Confidence 7 799999999999999999999841 12 2234567788889988864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.8e-32 Score=266.06 Aligned_cols=289 Identities=19% Similarity=0.249 Sum_probs=226.0
Q ss_pred cEEEeCCCccEEEEEcCCCCCc-eeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccC-CCCCcE
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPC-FILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSR-SSSTYN 85 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~-~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~ 85 (427)
.+=||+||.++++ |.... +. ...||+++..... ..-.+||++|..... .+.+..
T Consensus 6 ~~giDlGt~~~~i-~~~~~-~~~~~~ps~va~~~~~----------------------~~~~~vG~~A~~~~~~~p~~~~ 61 (335)
T PRK13929 6 EIGIDLGTANILV-YSKNK-GIILNEPSVVAVDTET----------------------KAVLAIGTEAKNMIGKTPGKIV 61 (335)
T ss_pred eEEEEcccccEEE-EECCC-cEEecCCcEEEEECCC----------------------CeEEEeCHHHHHhhhcCCCcEE
Confidence 4889999999998 43322 33 3468888886321 123689999988752 224688
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhh---ccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFN---YLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
+.+|+++|.|.|||.++.+|+|++.+ .++..++.+++++++|+..+..+|+.+.+ +|+.+|++.++++.+|++|++
T Consensus 62 ~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~ 140 (335)
T PRK13929 62 AVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAI 140 (335)
T ss_pred EEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHH
Confidence 89999999999999999999999874 56776666899999999999999999999 899999999999999999999
Q ss_pred hccCCCCCcceEEEEEcCCCceEEEEe-ecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcC
Q 014312 163 AGYTTSKCEMTGVVVDVGDGATYVVPV-AEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYC 241 (427)
Q Consensus 163 ~~g~~~~~~~tglVVDiG~~~t~v~pV-~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c 241 (427)
++|.......+++|||+|++.|+++++ ++|..... ..++||+++|++|.+.+.... .+. .+...+|++|+++|
T Consensus 141 ~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~~-~~~--~~~~~AE~iK~~l~ 214 (335)
T PRK13929 141 GADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKKY-NLL--IGERTAEQVKMEIG 214 (335)
T ss_pred hcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHHc
Confidence 997543336789999999999999999 66655443 357999999999999987532 222 24578999999999
Q ss_pred cccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeee--cccccccCCCCCCCCCCChHHHHHHHHHhCChh
Q 014312 242 YTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFL--GPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPID 319 (427)
Q Consensus 242 ~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~--~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d 319 (427)
++..+..++. ......+...+.+..+.++.++|. ++|.+|+ |.+.|.++|++|+++
T Consensus 215 ~~~~~~~~~~-----------~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~-----------i~~~i~~~L~~~~~~ 272 (335)
T PRK13929 215 YALIEHEPET-----------MEVRGRDLVTGLPKTITLESKEIQGAMRESLLH-----------ILEAIRATLEDCPPE 272 (335)
T ss_pred CCCCCCCCce-----------EEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHH-----------HHHHHHHHHHhCCcc
Confidence 9865421110 001100111244557888877776 5777764 899999999999999
Q ss_pred hHHHhhc-CeEEecCccCcccHHHHHHHHHH
Q 014312 320 TRRALYK-NIVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 320 ~r~~l~~-nIil~GG~s~i~G~~eRL~~eL~ 349 (427)
++..+++ +|+||||+|++|||.+||++++.
T Consensus 273 l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 273 LSGDIVDRGVILTGGGALLNGIKEWLSEEIV 303 (335)
T ss_pred cchhhcCCCEEEEchhhhhhhHHHHHHHHHC
Confidence 9999998 69999999999999999999984
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=2.3e-29 Score=239.23 Aligned_cols=314 Identities=20% Similarity=0.221 Sum_probs=228.2
Q ss_pred cEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCC-CCCcEE
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRS-SSTYNL 86 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~ 86 (427)
-+=||+||.++++ |..+..=.+..||+++.+... .+-..+|++|..+... +.++.+
T Consensus 3 ~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~----------------------~~i~avG~~A~~m~gktp~~i~~ 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT----------------------GKILAVGDEAKAMLGKTPDNIEV 59 (326)
T ss_dssp EEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT------------------------EEEESHHHHTTTTS-GTTEEE
T ss_pred ceEEecCcccEEE-EECCCCEEEecCcEEEEECCC----------------------CeEEEEhHHHHHHhhcCCCccEE
Confidence 5779999999999 444443446789999987421 2346789999886543 257999
Q ss_pred eCcccCCccCCHHHHHHHHHHHHhhccCC-CCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhcc
Q 014312 87 SYPIRHGQVDNWDAMERYWQQCIFNYLRC-DPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGY 165 (427)
Q Consensus 87 ~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~-~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g 165 (427)
.+|+++|.|.|++..+.+++|++.+..+. ......++++.|.-.+...|+.+.+.+- ..|+..++++++|++|+++.|
T Consensus 60 ~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaG 138 (326)
T PF06723_consen 60 VRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAG 138 (326)
T ss_dssp E-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT
T ss_pred EccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCC
Confidence 99999999999999999999999887765 3355679999999999999999999885 589999999999999999998
Q ss_pred CCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccc
Q 014312 166 TTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCS 245 (427)
Q Consensus 166 ~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 245 (427)
.........+|||+|+++|.++-+..|-++. .+.+++||+++++.+.+.+++++. + .....++|++|++++++..
T Consensus 139 l~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y~-l--~Ig~~tAE~iK~~~g~~~~ 213 (326)
T PF06723_consen 139 LDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKYN-L--LIGERTAEKIKIEIGSASP 213 (326)
T ss_dssp --TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHHS-E--E--HHHHHHHHHHH-BSS-
T ss_pred CCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhhC-c--ccCHHHHHHHHHhcceeec
Confidence 6543356789999999999999998888875 456799999999999999988753 2 2567899999999998764
Q ss_pred cHHHHHhhccCCCccccceeeccCCCCCCceEEeecc-eeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHh
Q 014312 246 DIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGY-ERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRAL 324 (427)
Q Consensus 246 d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~-er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l 324 (427)
.-.++ .......|..+|.+..++++. +-..+.+..+. .|.+.|.++++++|+++..++
T Consensus 214 ~~~~~-----------~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~----------~I~~~i~~~Le~~pPel~~DI 272 (326)
T PF06723_consen 214 PEEEE-----------SMEVRGRDLITGLPKSIEITSSEVREAIEPPVD----------QIVEAIKEVLEKTPPELAADI 272 (326)
T ss_dssp -HHHH-----------EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH----------HHHHHHHHHHHTS-HHHHHHH
T ss_pred cCCCc-----------eEEEECccccCCCcEEEEEcHHHHHHHHHHHHH----------HHHHHHHHHHHhCCHHHHHHH
Confidence 32221 122333344568888888864 44444444433 599999999999999999998
Q ss_pred hcC-eEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 325 YKN-IVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 325 ~~n-Iil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
++| |+||||+|+++||.++|++++. ++|+ ..++|.++.-.|+..+..
T Consensus 273 ~~~GI~LtGGga~l~Gl~~~i~~~~~----------------------~pV~--va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 273 LENGIVLTGGGALLRGLDEYISEETG----------------------VPVR--VADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHH-EEEESGGGGSBTHHHHHHHHHS----------------------S-EE--E-SSTTTHHHHHHHHTTC
T ss_pred HHCCEEEEChhhhhccHHHHHHHHHC----------------------CCEE--EcCCHHHHHHHHHHHHHh
Confidence 876 9999999999999999999983 1333 355677888888766654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=3.2e-29 Score=243.86 Aligned_cols=315 Identities=17% Similarity=0.204 Sum_probs=231.4
Q ss_pred cEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccC-CCCCcEE
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSR-SSSTYNL 86 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~ 86 (427)
-+=||+|+.++++-.. +..-.+..||+++..... ..-+++|++|..... .+.+..+
T Consensus 5 ~~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~----------------------~~i~~vG~~A~~~~~~~p~~~~~ 61 (336)
T PRK13928 5 DIGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT----------------------NKVLAVGEEARRMVGRTPGNIVA 61 (336)
T ss_pred eeEEEcccccEEEEEC-CCCEEEccCCEEEEECCC----------------------CeEEEecHHHHHhhhcCCCCEEE
Confidence 4889999999999665 333334678888876310 123578999887642 1236888
Q ss_pred eCcccCCccCCHHHHHHHHHHHHhhccCCCCCCce-eEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhcc
Q 014312 87 SYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHY-FLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGY 165 (427)
Q Consensus 87 ~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~-vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g 165 (427)
.+|+++|.|.||+.++.+|+|++.+.......++| +++++| ......+++.++.+|+.+|++.+.++++|++|++++|
T Consensus 62 ~~pi~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g 140 (336)
T PRK13928 62 IRPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIP-TGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAG 140 (336)
T ss_pred EccCCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeC-CCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcC
Confidence 89999999999999999999988543222245666 777885 4455677888888899999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccc
Q 014312 166 TTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCS 245 (427)
Q Consensus 166 ~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 245 (427)
........++|||+|++.|++++|..|.++... ..++||+++|+.+.+.+..+. .+. .....++++|++++++..
T Consensus 141 ~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~ 215 (336)
T PRK13928 141 LDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFP 215 (336)
T ss_pred CcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhccccc
Confidence 532224679999999999999999988776543 579999999999999887542 221 234679999999887643
Q ss_pred cHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhh
Q 014312 246 DIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALY 325 (427)
Q Consensus 246 d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~ 325 (427)
+... ........+..++.+..+.++.++|. |+++.+ ...+.+.|.+++++++.+++..++
T Consensus 216 ~~~~-----------~~~~v~g~~~~~~~~~~~~i~~~~~~--eii~~~-------~~~i~~~i~~~l~~~~~~~~~~~i 275 (336)
T PRK13928 216 GARE-----------EEMEIRGRDLVTGLPKTITVTSEEIR--EALKEP-------VSAIVQAVKSVLERTPPELSADII 275 (336)
T ss_pred ccCC-----------cEEEEecccccCCCceEEEECHHHHH--HHHHHH-------HHHHHHHHHHHHHhCCccccHhhc
Confidence 3110 00011111111244446677766665 666654 236899999999999999998999
Q ss_pred c-CeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 326 K-NIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 326 ~-nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
+ +|+|+||+|++||+.++|++++.. ++. ...+|..+.=+||++++.
T Consensus 276 ~~~IvL~GG~s~ipgi~e~l~~~~~~----------------------~v~--~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 276 DRGIIMTGGGALLHGLDKLLAEETKV----------------------PVY--IAEDPISCVALGTGKMLE 322 (336)
T ss_pred CCCEEEECcccchhhHHHHHHHHHCC----------------------Cce--ecCCHHHHHHHHHHHHHh
Confidence 8 799999999999999999988842 122 234567888899999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.89 E-value=3.2e-22 Score=183.54 Aligned_cols=299 Identities=19% Similarity=0.218 Sum_probs=220.7
Q ss_pred CCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEcccccccc-CCCCCc
Q 014312 6 RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKS-RSSSTY 84 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~ 84 (427)
.+.+=||+|+.++++=.- +..=-+..||+++..... ....-..+|+||..+- ..+++.
T Consensus 6 s~diGIDLGTanTlV~~k-~kgIVl~ePSVVAi~~~~--------------------~~~~v~aVG~eAK~MlGrTP~ni 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK-GKGIVLNEPSVVAIESEG--------------------KTKVVLAVGEEAKQMLGRTPGNI 64 (342)
T ss_pred cccceeeecccceEEEEc-CceEEecCceEEEEeecC--------------------CCceEEEehHHHHHHhccCCCCc
Confidence 457889999999999444 333335678888887421 1133468999999877 444789
Q ss_pred EEeCcccCCccCCHHHHHHHHHHHHhhccCCC--CCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 85 NLSYPIRHGQVDNWDAMERYWQQCIFNYLRCD--PEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 85 ~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~--~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
...+|+++|+|.|++..+.+++|+..+..+-. ...-.++++.|.-.+...|+.+-|.+- .-+...|++.+.|++|++
T Consensus 65 ~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~-~aGa~~V~lieEp~aAAI 143 (342)
T COG1077 65 VAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAE-SAGAREVYLIEEPMAAAI 143 (342)
T ss_pred eEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHH-hccCceEEEeccHHHHHh
Confidence 99999999999999999999999876654322 233457788888888888888887765 468899999999999999
Q ss_pred hccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCc
Q 014312 163 AGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCY 242 (427)
Q Consensus 163 ~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~ 242 (427)
+.|......+..+|||+|.++|.+..+..|-++.. ...-+||+.+++.+...+++++--+ .....+|+||.+.++
T Consensus 144 Gaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr~~~nl~---IGe~taE~iK~eiG~ 218 (342)
T COG1077 144 GAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVRKKYNLL---IGERTAEKIKIEIGS 218 (342)
T ss_pred cCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHHHHhCee---ecHHHHHHHHHHhcc
Confidence 99866533556899999999999998865555533 3346999999999999998764322 345679999999998
Q ss_pred ccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHH
Q 014312 243 TCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRR 322 (427)
Q Consensus 243 v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~ 322 (427)
+..+...+. ........|-.+|-+..+.+..+..+ |+|=.| ...|.+.|...+.+||+++-.
T Consensus 219 a~~~~~~~~---------~~~eV~Grdl~~GlPk~i~i~s~ev~--eal~~~-------v~~Iveair~~Le~tpPeL~~ 280 (342)
T COG1077 219 AYPEEEDEE---------LEMEVRGRDLVTGLPKTITINSEEIA--EALEEP-------LNGIVEAIRLVLEKTPPELAA 280 (342)
T ss_pred cccccCCcc---------ceeeEEeeecccCCCeeEEEcHHHHH--HHHHHH-------HHHHHHHHHHHHhhCCchhcc
Confidence 765422111 11122222333466667777655432 333221 236899999999999999999
Q ss_pred HhhcC-eEEecCccCcccHHHHHHHHHH
Q 014312 323 ALYKN-IVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 323 ~l~~n-Iil~GG~s~i~G~~eRL~~eL~ 349 (427)
+.+++ |+++||+|++.||.+.|.+|..
T Consensus 281 DI~ergivltGGGalLrglD~~i~~et~ 308 (342)
T COG1077 281 DIVERGIVLTGGGALLRGLDRLLSEETG 308 (342)
T ss_pred cHhhCceEEecchHHhcCchHhHHhccC
Confidence 99999 9999999999999999988774
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.69 E-value=8.8e-16 Score=141.69 Aligned_cols=208 Identities=20% Similarity=0.192 Sum_probs=150.9
Q ss_pred eCcccCCccCCHHHHHHHHHHHHhh---ccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhh
Q 014312 87 SYPIRHGQVDNWDAMERYWQQCIFN---YLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAA 163 (427)
Q Consensus 87 ~~Pi~~G~i~d~~~~e~i~~~~l~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~ 163 (427)
..|+++|.|.|.+..+.+++++... .++. .-..++++.|......+|+.+.+. ++..|+.-+.+..++++++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCcccHHHHHHH-HHHcCCceEEEeehHHHHHHH
Confidence 3689999999999999999998743 3333 235699999988888888776654 456799999999999999888
Q ss_pred ccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcc
Q 014312 164 GYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYT 243 (427)
Q Consensus 164 ~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v 243 (427)
++ ....+|||+|++.|+++-+.+|.++. .+..++||+++|+.+.+.+. .+.+.+|++|.....
T Consensus 105 ~~-----~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~- 167 (239)
T TIGR02529 105 LQ-----IKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKD- 167 (239)
T ss_pred hc-----CCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCC-
Confidence 76 44579999999999999999998775 45678999999998876553 355788888875431
Q ss_pred cccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHH
Q 014312 244 CSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRA 323 (427)
Q Consensus 244 ~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~ 323 (427)
..+.. ...+.+ ...+.+.|.+++++.++
T Consensus 168 ----~~~~~---------------------------------~~i~~~----------~~~i~~~i~~~l~~~~~----- 195 (239)
T TIGR02529 168 ----EEEIF---------------------------------PVVKPV----------YQKMASIVKRHIEGQGV----- 195 (239)
T ss_pred ----HHHHH---------------------------------HHHHHH----------HHHHHHHHHHHHHhCCC-----
Confidence 00000 000000 11355566666665544
Q ss_pred hhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeeccee
Q 014312 324 LYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSV 392 (427)
Q Consensus 324 l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsi 392 (427)
..|+||||+|++||+.+.|++.+.. ++ ..+.+|.++.=+|+.+
T Consensus 196 --~~v~LtGG~a~ipgl~e~l~~~lg~----------------------~v--~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 196 --KDLYLVGGACSFSGFADVFEKQLGL----------------------NV--IKPQHPLYVTPLGIAM 238 (239)
T ss_pred --CEEEEECchhcchhHHHHHHHHhCC----------------------Cc--ccCCCCCeehhheeec
Confidence 3799999999999999999888742 11 2245677888888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.64 E-value=1.6e-14 Score=135.59 Aligned_cols=211 Identities=18% Similarity=0.144 Sum_probs=147.4
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhh---ccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhh
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFN---YLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~ 162 (427)
.+.++++|.|.|++.....++++... .++.+ -..++++.|......+|..+. -..+..|+.-..+..++.++..
T Consensus 54 ~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~ 130 (267)
T PRK15080 54 WADVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAA 130 (267)
T ss_pred cccccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHH
Confidence 44689999999999999999887652 34543 235677888877666666666 5667789998889999998888
Q ss_pred hccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCc
Q 014312 163 AGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCY 242 (427)
Q Consensus 163 ~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~ 242 (427)
+.+ ...++|||+|++.|.++-+.+|.++.. ...++||+++|+.+.+.+. .+.+.+|.+|.....
T Consensus 131 ~~~-----~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~~~ 194 (267)
T PRK15080 131 VLG-----IDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEQYKRDPKH 194 (267)
T ss_pred HhC-----CCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------CCHHHHHHHHhccCC
Confidence 775 345799999999999999999988754 4679999999999887653 345677888865320
Q ss_pred ccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHH
Q 014312 243 TCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRR 322 (427)
Q Consensus 243 v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~ 322 (427)
. +++. .+-+.+ ...+.+.|.++++..+
T Consensus 195 --~---~~~~---------------------------------~ii~~~----------~~~i~~~i~~~l~~~~----- 221 (267)
T PRK15080 195 --H---KEIF---------------------------------PVVKPV----------VEKMASIVARHIEGQD----- 221 (267)
T ss_pred --H---HHHH---------------------------------HHHHHH----------HHHHHHHHHHHHhcCC-----
Confidence 0 0000 000000 0124445555554432
Q ss_pred HhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeec
Q 014312 323 ALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLA 394 (427)
Q Consensus 323 ~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsila 394 (427)
.+.|+||||+|++||+.+.+++.+.. +++ .+++|.++.=+|+.+++
T Consensus 222 --~~~IvLtGG~s~lpgl~e~l~~~lg~----------------------~v~--~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 222 --VEDIYLVGGTCCLPGFEEVFEKQTGL----------------------PVH--KPQHPLFVTPLGIALSC 267 (267)
T ss_pred --CCEEEEECCcccchhHHHHHHHHhCC----------------------Ccc--cCCCchHHHHHHHHhhC
Confidence 35899999999999999999988842 122 24567788888887653
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.51 E-value=7.3e-13 Score=138.94 Aligned_cols=246 Identities=17% Similarity=0.115 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHHHHHh---hccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCc
Q 014312 95 VDNWDAMERYWQQCIF---NYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCE 171 (427)
Q Consensus 95 i~d~~~~e~i~~~~l~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~ 171 (427)
+...+....++.++.. ..++.. -..++++.|...+..+|+.+.+. .+..|+..+.++++|.+|+++++...+..
T Consensus 110 ~s~eei~a~iL~~l~~~ae~~lg~~--v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~ 186 (621)
T CHL00094 110 FSPEEISAQVLRKLVEDASKYLGET--VTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNN 186 (621)
T ss_pred EcHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCC
Confidence 3334455566665543 223322 24588999999988888877665 46779999999999999999887543224
Q ss_pred ceEEEEEcCCCceEEEEeecce-e--cccCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-c----hHHHHHHhhh
Q 014312 172 MTGVVVDVGDGATYVVPVAEGY-V--IGSSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-D----SFEVARKVKE 238 (427)
Q Consensus 172 ~tglVVDiG~~~t~v~pV~dG~-~--l~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~----~~~~~~~iKe 238 (427)
..-+|+|+|+++++|+-+.-+. . +..+....++||+++++.|.+.+.++ +..+... . -...++++|+
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~ 266 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKI 266 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHH
Confidence 5789999999999998874331 1 11122346899999999988776543 2222110 0 1133566666
Q ss_pred hcCcccccHHHHHhhccCCCccccceeeccC---CCCC-CceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHHH
Q 014312 239 MYCYTCSDIVKEYNKHDKEPSKYLKQWRGIK---PKTG-APYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKCI 313 (427)
Q Consensus 239 ~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~---~~~g-~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~i 313 (427)
.+.... .....++. ..+| ......+..++|. ..+.|+ ..+...|.+++
T Consensus 267 ~LS~~~-----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~----------~~~~~~i~~~L 319 (621)
T CHL00094 267 ELSNLT-----------------QTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLI----------NRCRIPVENAL 319 (621)
T ss_pred hcCCCC-----------------ceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 554211 00111110 0001 1122333333321 111111 12344445555
Q ss_pred HhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceee
Q 014312 314 QSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVL 393 (427)
Q Consensus 314 ~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsil 393 (427)
.+.. +...-.+.|+|+||+|.+|++.+.|++.+... +....+|..++.+||+++
T Consensus 320 ~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~------------------------~~~~~~pdeava~GAA~~ 373 (621)
T CHL00094 320 KDAK--LDKSDIDEVVLVGGSTRIPAIQELVKKLLGKK------------------------PNQSVNPDEVVAIGAAVQ 373 (621)
T ss_pred HHcC--CChhhCcEEEEECCccCChHHHHHHHHHhCCC------------------------cCcCCCchhHHHhhhHHH
Confidence 5432 22334478999999999999999998765321 111234567788888888
Q ss_pred ccc
Q 014312 394 AST 396 (427)
Q Consensus 394 asl 396 (427)
|..
T Consensus 374 aa~ 376 (621)
T CHL00094 374 AGV 376 (621)
T ss_pred HHH
Confidence 763
No 27
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.42 E-value=7.4e-12 Score=131.15 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=132.8
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC-CCcceEEEEEcCCCceEEEEee--ccee-c
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS-KCEMTGVVVDVGDGATYVVPVA--EGYV-I 195 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~-~~~~tglVVDiG~~~t~v~pV~--dG~~-l 195 (427)
..++++.|...+..+|+.+.+. .+..|++-+.++++|.+|+++++... +...+-+|+|+|+++++++.+. +|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 4589999999999988888764 56679998999999999988876432 2356789999999999998763 3321 1
Q ss_pred ccCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-ch----HHHHHHhhhhcCcccccHHHHHhhccCCCcccccee
Q 014312 196 GSSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-DS----FEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQW 265 (427)
Q Consensus 196 ~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~ 265 (427)
..+.....+||.++++.|.+.+..+ +..+... .. ...++.+|+.++..... .....+
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~-------------~i~i~~ 276 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLST-------------EINLPF 276 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCce-------------EEEeee
Confidence 1122235799999999988776532 2222110 01 12355666654421000 000000
Q ss_pred eccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHH
Q 014312 266 RGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQ 345 (427)
Q Consensus 266 ~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~ 345 (427)
...+...+....+.++.+.| |-++.|- ...+.+.|.+++..... ...-.+.|+|+||+|.+|++.+.++
T Consensus 277 ~~~~~~g~~~~~~~itr~~f---e~l~~~l------~~~~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~~i~ 345 (595)
T TIGR02350 277 ITADASGPKHLEMTLTRAKF---EELTADL------VERTKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQELVK 345 (595)
T ss_pred cccCCCCCeeEEEEEeHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHHHHH
Confidence 00010001122344444333 1222211 11355566666655432 2233578999999999999999997
Q ss_pred HHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 346 RDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 346 ~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
+.+... +....++..++..||+++|.
T Consensus 346 ~~f~~~------------------------~~~~~~pdeava~GAa~~aa 371 (595)
T TIGR02350 346 DFFGKE------------------------PNKSVNPDEVVAIGAAIQGG 371 (595)
T ss_pred HHhCCc------------------------ccCCcCcHHHHHHHHHHHHH
Confidence 655311 11233456677778888765
No 28
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.42 E-value=1.1e-11 Score=129.77 Aligned_cols=204 Identities=14% Similarity=0.127 Sum_probs=120.9
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEee--cceec-c
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVA--EGYVI-G 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~--dG~~l-~ 196 (427)
..++++.|......+|+.+.+ ..+..|+.-+.++++|.+|++++|...+....-+|+|+|.++++|+-+. +|..- .
T Consensus 161 ~~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 468999999998888887665 4567899989999999999988875432245789999999999998774 55432 2
Q ss_pred cCceEeccchHHHHHHHHHHHHhc-----CCCCCC-cc----hHHHHHHhhhhcCcccccHHHHHhhccCCCccccceee
Q 014312 197 SSIKSIPIAGKDVTLFIQQLMRER-----GENVPP-ED----SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWR 266 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~ 266 (427)
.+.-...+||.++++.|.+.+.++ +.++.. .. -...+|++|+.++..... .....+.
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~-------------~i~i~~i 306 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMET-------------EVNLPFI 306 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCce-------------EEEEeee
Confidence 222245899999998887766542 222211 00 112355666554421100 0000010
Q ss_pred ccCCCCCCceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHH
Q 014312 267 GIKPKTGAPYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQ 345 (427)
Q Consensus 267 ~~~~~~g~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~ 345 (427)
..+...+..+.+.++.+.|. ..+.||. .+.+.+.+++..... ...-...|+|+||+|.+|.+.+.+.
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~----------r~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~ 374 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIE----------RSIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVK 374 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHH----------HHHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHH
Confidence 00000011234444444331 2222221 234445555544332 2334578999999999999999998
Q ss_pred HHHH
Q 014312 346 RDLK 349 (427)
Q Consensus 346 ~eL~ 349 (427)
+.+.
T Consensus 375 ~~fg 378 (657)
T PTZ00186 375 KFFQ 378 (657)
T ss_pred HHhC
Confidence 7653
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.42 E-value=1.8e-11 Score=129.04 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=122.9
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEee--cceec-c
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVA--EGYVI-G 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~--dG~~l-~ 196 (427)
..++++.|...+..+|+.+.+. .+..|++-+.++++|.+|++++|........-+|+|+|+++++|+.+. +|... .
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~ 253 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVK 253 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence 4699999999999888877654 566799999999999999999885432345789999999999998763 55332 1
Q ss_pred cCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-ch----HHHHHHhhhhcCcccccHHHHHhhccCCCccccceee
Q 014312 197 SSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-DS----FEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWR 266 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~ 266 (427)
.+.-...+||.++++.|.+.+..+ +.++... .. ...++.+|+.++.-. .....+.
T Consensus 254 a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~---------------~~~i~i~ 318 (663)
T PTZ00400 254 ATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT---------------QTEINLP 318 (663)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC---------------ceEEEEE
Confidence 222335899999999998877543 2222110 00 123555666543210 0000010
Q ss_pred --ccCCCCC-CceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHH
Q 014312 267 --GIKPKTG-APYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHR 342 (427)
Q Consensus 267 --~~~~~~g-~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~e 342 (427)
..+. .| ..+.+.++.+.|. ..+.+|. .+.+.|.+++.+... ...-...|+|+||+|.+|++.+
T Consensus 319 ~~~~d~-~g~~~~~~~itR~efe~l~~~l~~----------~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~ 385 (663)
T PTZ00400 319 FITADQ-SGPKHLQIKLSRAKLEELTHDLLK----------KTIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSE 385 (663)
T ss_pred eeccCC-CCceEEEEEECHHHHHHHHHHHHH----------HHHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHH
Confidence 0010 01 1123444443331 1222221 355556666665432 2333588999999999999999
Q ss_pred HHHHHH
Q 014312 343 RLQRDL 348 (427)
Q Consensus 343 RL~~eL 348 (427)
+|++.+
T Consensus 386 ~l~~~f 391 (663)
T PTZ00400 386 TVKKIF 391 (663)
T ss_pred HHHHHh
Confidence 997765
No 30
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.41 E-value=6.5e-12 Score=131.06 Aligned_cols=218 Identities=16% Similarity=0.132 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHh---hccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceE
Q 014312 98 WDAMERYWQQCIF---NYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTG 174 (427)
Q Consensus 98 ~~~~e~i~~~~l~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tg 174 (427)
.+....++.++.. ..++.. -..++++.|...+..+|+.+.+. .+..|+.-+.++++|.+|+++++...+...+-
T Consensus 107 ~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~v 183 (599)
T TIGR01991 107 VEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIY 183 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEE
Confidence 3444455555432 234432 24699999999999988887666 57789999999999999988776432224578
Q ss_pred EEEEcCCCceEEEEee--cceec-ccCceEeccchHHHHHHHHHHHHhc-CCCCCCc-ch----HHHHHHhhhhcCcccc
Q 014312 175 VVVDVGDGATYVVPVA--EGYVI-GSSIKSIPIAGKDVTLFIQQLMRER-GENVPPE-DS----FEVARKVKEMYCYTCS 245 (427)
Q Consensus 175 lVVDiG~~~t~v~pV~--dG~~l-~~~~~~~~~gG~~l~~~l~~~l~~~-~~~~~~~-~~----~~~~~~iKe~~c~v~~ 245 (427)
+|+|+|+++++|+.+- +|..- ..+.....+||.++++.|.+.+.++ +...... .. ...++.+|+.++.-
T Consensus 184 lV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~-- 261 (599)
T TIGR01991 184 AVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDA-- 261 (599)
T ss_pred EEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--
Confidence 9999999999998763 34221 1112235899999999999988654 2222110 00 11234444433210
Q ss_pred cHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhh
Q 014312 246 DIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALY 325 (427)
Q Consensus 246 d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~ 325 (427)
......++. .|....+.++.+.| |-++.|- ...+.+.|.+++..... ...-.
T Consensus 262 ---------------~~~~i~i~~--~g~~~~~~itr~ef---e~l~~~l------l~~i~~~i~~~L~~a~~--~~~~i 313 (599)
T TIGR01991 262 ---------------ESVEVDFTL--DGKDFKGKLTRDEF---EALIQPL------VQKTLSICRRALRDAGL--SVEEI 313 (599)
T ss_pred ---------------ceEEEEEEE--CCcEEEEEEeHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC--ChhhC
Confidence 011111111 14434555554443 2222221 11355556666654422 22335
Q ss_pred cCeEEecCccCcccHHHHHHHHH
Q 014312 326 KNIVLSGGSTMFKDFHRRLQRDL 348 (427)
Q Consensus 326 ~nIil~GG~s~i~G~~eRL~~eL 348 (427)
..|+|+||+|.+|++.+++.+.+
T Consensus 314 d~ViLvGGssriP~V~~~l~~~f 336 (599)
T TIGR01991 314 KGVVLVGGSTRMPLVRRAVAELF 336 (599)
T ss_pred CEEEEECCcCCChHHHHHHHHHh
Confidence 78999999999999999998765
No 31
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.39 E-value=1.8e-11 Score=129.10 Aligned_cols=223 Identities=15% Similarity=0.113 Sum_probs=131.6
Q ss_pred ccCCHHHHHHHHHHHHh---hccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCC
Q 014312 94 QVDNWDAMERYWQQCIF---NYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKC 170 (427)
Q Consensus 94 ~i~d~~~~e~i~~~~l~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~ 170 (427)
.+.-.+....++.++.. +.++.. -..++|+.|...+..+|+.+.+ ..+..|+..+.++++|.+|+++++...+.
T Consensus 146 ~~speei~a~iL~~lk~~ae~~lg~~--v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~ 222 (673)
T PLN03184 146 QFAAEEISAQVLRKLVDDASKFLNDK--VTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKS 222 (673)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCC
Confidence 34444555566666543 234322 2469999999999888887765 45678999999999999999888754323
Q ss_pred cceEEEEEcCCCceEEEEee--ccee-cccCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-c----hHHHHHHhh
Q 014312 171 EMTGVVVDVGDGATYVVPVA--EGYV-IGSSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-D----SFEVARKVK 237 (427)
Q Consensus 171 ~~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~----~~~~~~~iK 237 (427)
...-+|+|+|.++++|+.+. +|.. +..+.-...+||.++++.|.+.+..+ +.++... . -...+|++|
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK 302 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAK 302 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHH
Confidence 45789999999999988763 2321 11122235899999999998877543 2111110 0 022355566
Q ss_pred hhcCcccccHHHHHhhccCCCccccceeeccC--C-CCC-CceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHH
Q 014312 238 EMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIK--P-KTG-APYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKC 312 (427)
Q Consensus 238 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~--~-~~g-~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~ 312 (427)
+.+..... ....++. . ..| ....+.++.+.|. ..+.|++ .+.+.|.++
T Consensus 303 ~~LS~~~~-----------------~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~----------r~~~~i~~~ 355 (673)
T PLN03184 303 IELSSLTQ-----------------TSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD----------RCKTPVENA 355 (673)
T ss_pred HhcCCCCc-----------------ceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 55432110 0111110 0 001 1123344433331 1122221 245556666
Q ss_pred HHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHH
Q 014312 313 IQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDL 348 (427)
Q Consensus 313 i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL 348 (427)
+.....+. .-...|+|+||+|.+|.+.++|.+.+
T Consensus 356 L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~f 389 (673)
T PLN03184 356 LRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLT 389 (673)
T ss_pred HHHcCCCh--hHccEEEEECCccccHHHHHHHHHHh
Confidence 65554332 23488999999999999999998766
No 32
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.37 E-value=2.3e-11 Score=127.98 Aligned_cols=223 Identities=16% Similarity=0.095 Sum_probs=132.7
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeec--cee-cc
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAE--GYV-IG 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~d--G~~-l~ 196 (427)
..++++.|..++..+|+.+.+. .+..|++-+.++++|.+|+++++...+...+-+|+|+|.++++++.+-- |.. +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 4689999999999888887654 4668999999999999998887643212467899999999999987632 211 11
Q ss_pred cCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-c----hHHHHHHhhhhcCcccccHHHHHhhccCCCccccceee
Q 014312 197 SSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-D----SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWR 266 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~----~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~ 266 (427)
.+.....+||.++++.|.+.+.++ +.++... . -...++.+|+.++.-. .....
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~-----------------~~~i~ 275 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ-----------------QTEIN 275 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------------eEEEE
Confidence 122235799999999988776543 2222110 0 0123555565543210 00111
Q ss_pred ccCC---CCC-CceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHH
Q 014312 267 GIKP---KTG-APYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHR 342 (427)
Q Consensus 267 ~~~~---~~g-~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~e 342 (427)
++.. ..| ....+.++.+.| |-++.|- ...+.+.|.+++...... ..-...|+|+||+|.+|.+.+
T Consensus 276 i~~~~~d~~g~~~~~~~itR~~f---e~l~~~l------~~~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~ 344 (627)
T PRK00290 276 LPFITADASGPKHLEIKLTRAKF---EELTEDL------VERTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQE 344 (627)
T ss_pred EeecccCCCCCeEEEEEECHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHH
Confidence 1100 012 112344444333 1222211 113555666666655332 223478999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 343 RLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 343 RL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
+|++.+..- +....++..++..||+++|.
T Consensus 345 ~l~~~fg~~------------------------~~~~~npdeava~GAa~~aa 373 (627)
T PRK00290 345 LVKEFFGKE------------------------PNKGVNPDEVVAIGAAIQGG 373 (627)
T ss_pred HHHHHhCCC------------------------CCcCcCChHHHHHhHHHHHH
Confidence 997765211 11123456777888888775
No 33
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.37 E-value=1.3e-11 Score=129.94 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=120.1
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC-CCcceEEEEEcCCCceEEEEee--ccee-c
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS-KCEMTGVVVDVGDGATYVVPVA--EGYV-I 195 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~-~~~~tglVVDiG~~~t~v~pV~--dG~~-l 195 (427)
..++|+.|..++..+|+.+.+. .+..|+.-+.++++|.+|++++|... ....+-+|+|+|.++++|+-+- +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 4699999999999988887664 56689999999999999998887431 1244689999999999988662 2321 1
Q ss_pred ccCceEeccchHHHHHHHHHHHHhc-----CCCCCCcc-----hHHHHHHhhhhcCcccccHHHHHhhccCCCcccccee
Q 014312 196 GSSIKSIPIAGKDVTLFIQQLMRER-----GENVPPED-----SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQW 265 (427)
Q Consensus 196 ~~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~ 265 (427)
..+.-...+||.++++.|.+.+.++ +.++.... -...+++.|+.++.-... .....+
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~-------------~i~i~~ 279 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTT-------------SINLPF 279 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCce-------------EEEEee
Confidence 1112234799999999888776543 22221110 012345555544321000 000001
Q ss_pred eccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHH
Q 014312 266 RGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQ 345 (427)
Q Consensus 266 ~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~ 345 (427)
...+...+..+.+.++.+.| |-++.|- ...+.+.|.+++.... +...-.+.|+|+||+|.+|.+.++|+
T Consensus 280 ~~~d~~~~~~~~~~itR~~f---e~l~~~l------~~~~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~ 348 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKF---EELTKDL------VEATIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQ 348 (653)
T ss_pred eccCCCCCeeEEEEEcHHHH---HHHHHHH------HHHHHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHH
Confidence 00110001223444444433 2222221 1135556666666543 33344578999999999999999998
Q ss_pred HHH
Q 014312 346 RDL 348 (427)
Q Consensus 346 ~eL 348 (427)
+.+
T Consensus 349 ~~f 351 (653)
T PRK13411 349 KFF 351 (653)
T ss_pred HHc
Confidence 665
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.35 E-value=2.2e-11 Score=128.10 Aligned_cols=199 Identities=16% Similarity=0.120 Sum_probs=118.0
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEee--ccee-cc
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVA--EGYV-IG 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~--dG~~-l~ 196 (427)
..++|+.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|...+...+-+|+|+|+++++|+.+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 3599999999999988877655 467899999999999999988875432356789999999999998763 3322 11
Q ss_pred cCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-c----hHHHHHHhhhhcCcccccHHHHHhhccCCCccccceee
Q 014312 197 SSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-D----SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWR 266 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~----~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~ 266 (427)
.+.-...+||.++++.|.+.+..+ +..+... . -...++.+|+.+.... ...+.
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~-----------------~~~i~ 277 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS-----------------VTDIS 277 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------------ceEEE
Confidence 122235799999999888776543 2222110 0 0123455555443211 00111
Q ss_pred ccCC---CCC-CceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHH
Q 014312 267 GIKP---KTG-APYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFH 341 (427)
Q Consensus 267 ~~~~---~~g-~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~ 341 (427)
++.. ..| ....+.++.+.|. ..+.|+. .+.+.|.+++.... +...-...|+|+||+|.+|.+.
T Consensus 278 i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~----------r~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~ 345 (668)
T PRK13410 278 LPFITATEDGPKHIETRLDRKQFESLCGDLLD----------RLLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQ 345 (668)
T ss_pred EeeeecCCCCCeeEEEEECHHHHHHHHHHHHH----------HHHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHH
Confidence 1110 001 1122333333321 1122211 24445555554332 2233456899999999999999
Q ss_pred HHHHHHH
Q 014312 342 RRLQRDL 348 (427)
Q Consensus 342 eRL~~eL 348 (427)
+.+.+-+
T Consensus 346 ~~l~~~f 352 (668)
T PRK13410 346 QLVRTLI 352 (668)
T ss_pred HHHHHHc
Confidence 9987654
No 35
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.35 E-value=3.1e-11 Score=125.37 Aligned_cols=187 Identities=16% Similarity=0.154 Sum_probs=119.9
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEe--ecceec-c
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPV--AEGYVI-G 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV--~dG~~l-~ 196 (427)
..++++.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|...+...+-+|+|+|.++++|+-+ .+|..- .
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 4699999999998888877765 56789999999999999999887542224567999999999998876 344221 1
Q ss_pred cCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCce
Q 014312 197 SSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPY 276 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 276 (427)
.+.-...+||+++++.|.+.+..+...-........++..|+.+..-. .+. ..
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~-------------------~~~------~~-- 273 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD-------------------SFN------ND-- 273 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc-------------------ccc------cc--
Confidence 111224699999999999888754321111112334666666543210 000 00
Q ss_pred EEeecceee-ecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHH
Q 014312 277 SCDIGYERF-LGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDL 348 (427)
Q Consensus 277 ~i~i~~er~-~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL 348 (427)
.+.++.+.| ...+.+|. .+.+.|.+++.... ..=.+.|+|+||+|.+|.+.++|.+.+
T Consensus 274 ~~~itr~efe~l~~~l~~----------~~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f 332 (595)
T PRK01433 274 NISINKQTLEQLILPLVE----------RTINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAF 332 (595)
T ss_pred eEEEcHHHHHHHHHHHHH----------HHHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHh
Confidence 334443333 12222222 35555666665543 112478999999999999999998665
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.32 E-value=4.8e-11 Score=125.83 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=122.7
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC--CCcceEEEEEcCCCceEEEEee--cceec
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS--KCEMTGVVVDVGDGATYVVPVA--EGYVI 195 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~--~~~~tglVVDiG~~~t~v~pV~--dG~~l 195 (427)
..++|+.|.+.+..+|+.+.+ ..+..|+.-+.++++|.+|+++++... ....+-+|+|+|+++++|+-+- +|..-
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 469999999999888887665 456789999999999999988876431 1245789999999999988763 44321
Q ss_pred -ccCceEeccchHHHHHHHHHHHHhcC------CCCCC-cc----hHHHHHHhhhhcCcccccHHHHHhhccCCCccccc
Q 014312 196 -GSSIKSIPIAGKDVTLFIQQLMRERG------ENVPP-ED----SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLK 263 (427)
Q Consensus 196 -~~~~~~~~~gG~~l~~~l~~~l~~~~------~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~ 263 (427)
..+.-...+||+++++.|.+.+.+.. ..+.. .. -...++.+|+.++.. ...
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~-----------------~~~ 282 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS-----------------TQA 282 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC-----------------ceE
Confidence 11122357999999999887765321 11211 00 112355566554321 011
Q ss_pred eeeccCCCCCCceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHH
Q 014312 264 QWRGIKPKTGAPYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHR 342 (427)
Q Consensus 264 ~~~~~~~~~g~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~e 342 (427)
...++....+..+.+.++.+.|. ..+.+|. .+.+.|.+++..+..+. .-.+.|+|+||+|.+|.+.+
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~----------~~~~~i~~~L~~a~~~~--~~i~~ViLvGGssriP~v~~ 350 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFR----------NTLQPVEKVLKDAGMDK--RSVHEVVLVGGSTRIPKVQS 350 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHH----------HHHHHHHHHHHHcCCCH--HHCcEEEEECCCCCChhHHH
Confidence 11221111133345555554442 2232322 24555666666554332 33578999999999999999
Q ss_pred HHHHHH
Q 014312 343 RLQRDL 348 (427)
Q Consensus 343 RL~~eL 348 (427)
+|.+-+
T Consensus 351 ~i~~~f 356 (653)
T PTZ00009 351 LIKDFF 356 (653)
T ss_pred HHHHHh
Confidence 987655
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.29 E-value=8.8e-11 Score=122.90 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=75.7
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEee--ccee-cc
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVA--EGYV-IG 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~--dG~~-l~ 196 (427)
..++++.|..++..+|+.+.+. .+..|++-+.++++|.+|+++++........-+|+|+|.++++|+.+- +|.. +.
T Consensus 150 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evl 228 (616)
T PRK05183 150 DGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVL 228 (616)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEE
Confidence 4699999999999888877554 677899999999999999887764322245678999999999998773 3321 11
Q ss_pred cCceEeccchHHHHHHHHHHHHhc
Q 014312 197 SSIKSIPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l~~~ 220 (427)
.+.-...+||.++++.|.+.+.++
T Consensus 229 at~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 229 ATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred EecCCCCcCHHHHHHHHHHHHHHH
Confidence 122235799999999998887654
No 38
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.28 E-value=2.2e-10 Score=113.23 Aligned_cols=181 Identities=16% Similarity=0.175 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHH
Q 014312 131 APESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVT 210 (427)
Q Consensus 131 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~ 210 (427)
++...+.+.+ +++..|+.-+.+..+|+++++++..........+|||+|++.|+++.+.+|.+.. ...+++||+++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4455555554 4577899888899999998887653221234579999999999999999998764 466899999999
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceee-eccc
Q 014312 211 LFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERF-LGPE 289 (427)
Q Consensus 211 ~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~-~~~E 289 (427)
+.+.+.+. ...+.+|++|.+++....+.. .......++.-..+. ...++.+.+ .+.+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~-----------~~~~~i~~~~~~~~~--~~~is~~~l~~ii~ 290 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLE-----------GPDENIEIPSVGERP--PRSLSRKELAEIIE 290 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCC-----------CCCCEEEeccCCCCC--CeEEcHHHHHHHHH
Confidence 98877543 356789999998886532200 000111111100011 112211111 0001
Q ss_pred ccccCCCCCCCCCCChHHHHH-HHHHhCChhhHHHhhcC-eEEecCccCcccHHHHHHHHHH
Q 014312 290 VFFNPEIYSSDFTTPLPAVID-KCIQSAPIDTRRALYKN-IVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 290 ~LF~P~~~~~~~~~~l~~~i~-~~i~~~~~d~r~~l~~n-Iil~GG~s~i~G~~eRL~~eL~ 349 (427)
.++ ..+.+.|. +.+++.+.+ .. ..+ |+||||+|++||+.+++.+.+.
T Consensus 291 ~~~----------~ei~~~i~~~~L~~~~~~--~~-i~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 291 ARA----------EEILEIVKQKELRKSGFK--EE-LNGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred HHH----------HHHHHHHHHHHHHhcCCc--cc-CCCEEEEeChHHcccCHHHHHHHHhC
Confidence 110 12444554 555554433 22 345 9999999999999999988774
No 39
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.21 E-value=1.1e-09 Score=109.79 Aligned_cols=185 Identities=21% Similarity=0.154 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHH
Q 014312 131 APESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVT 210 (427)
Q Consensus 131 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~ 210 (427)
++...+.+.+ +++..|+.-..++.+|++++++...........+|||+|+++|+++-+.+|.+. ....+++||+++|
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3445555555 568889998899999999998876443224468899999999999999999877 4466899999999
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccc
Q 014312 211 LFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEV 290 (427)
Q Consensus 211 ~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~ 290 (427)
+.+...|. .+...+|++|.++.....+.. .....+.++... +.+ ...++.. ..-++
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~-----------~~~~~i~v~~~~-~~~-~~~i~~~--~l~~i 296 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIV-----------GKDESVEVPSVG-GRP-PRSLQRQ--TLAEV 296 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccC-----------CCCceeEecCCC-CCC-CeEEcHH--HHHHH
Confidence 99987653 356789999987664322100 000112221110 110 0111100 00111
Q ss_pred cccCCCCCCCCCCChHHHHHHHHHhCChhhHHH-----hhcCeEEecCccCcccHHHHHHHHHH
Q 014312 291 FFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRA-----LYKNIVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 291 LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~-----l~~nIil~GG~s~i~G~~eRL~~eL~ 349 (427)
+-.. ...|.++|.+++..++..++.. +-+.|+||||+|+|||+.+.+++-+.
T Consensus 297 i~~r-------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~ 353 (420)
T PRK09472 297 IEPR-------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH 353 (420)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC
Confidence 1000 0124455666666665555533 44569999999999999999887764
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.08 E-value=2e-09 Score=113.43 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=129.3
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCC-CcceEEEEEcCCCceEEEEe--ecceecc
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSK-CEMTGVVVDVGDGATYVVPV--AEGYVIG 196 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~-~~~tglVVDiG~~~t~v~pV--~dG~~l~ 196 (427)
..++++.|..++..+|+.+.+.+ +..|++-+.+++.|.+|+++++.... ...+-+|+|+|+++++|+.+ .+|..--
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46899999999999888777654 56788888999999998876653221 24688999999999988877 3453221
Q ss_pred -cCceEeccchHHHHHHHHHHHHhc-----CCCCCCc-c----hHHHHHHhhhhcCcccccHHHHHhhccCCCcccccee
Q 014312 197 -SSIKSIPIAGKDVTLFIQQLMRER-----GENVPPE-D----SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQW 265 (427)
Q Consensus 197 -~~~~~~~~gG~~l~~~l~~~l~~~-----~~~~~~~-~----~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~ 265 (427)
.......+||.+++..|.+.+.++ +...... . -...++.+|+.+.... .....+
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~~~~~ 279 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSND---------------NTEITI 279 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSS---------------SSEEEE
T ss_pred cccccccccccceecceeecccccccccccccccccccccccccccccccccccccccc---------------cccccc
Confidence 223346899999999998887543 2222111 0 0123445555443210 000011
Q ss_pred eccCC-CCCCceEEeecceeee-cccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHH
Q 014312 266 RGIKP-KTGAPYSCDIGYERFL-GPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRR 343 (427)
Q Consensus 266 ~~~~~-~~g~~~~i~i~~er~~-~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eR 343 (427)
.+... ..|....+.+..+.|. ..+.+|+ .+.++|.+++..+... ..=...|+|+||+|.+|-+.++
T Consensus 280 ~~~~~~~~~~~~~~~itr~~fe~l~~~~~~----------~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~ 347 (602)
T PF00012_consen 280 SIESLYDDGEDFSITITREEFEELCEPLLE----------RIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEA 347 (602)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHHHTHHHHH----------HTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHH
T ss_pred ccccccccccccccccccceeccccccccc----------cccccccccccccccc--ccccceeEEecCcccchhhhhh
Confidence 11000 0022234555444432 2222222 3566777777655332 2334689999999999999988
Q ss_pred HHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 344 LQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 344 L~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
|.+.+.. .+....++..+.=.||+++|.
T Consensus 348 l~~~f~~------------------------~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 348 LKELFGK------------------------KISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp HHHHTTS------------------------EEB-SS-TTTHHHHHHHHHHH
T ss_pred hhhcccc------------------------ccccccccccccccccccchh
Confidence 8765531 112233556777889988876
No 41
>PRK11678 putative chaperone; Provisional
Probab=99.02 E-value=1.9e-08 Score=101.12 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=67.8
Q ss_pred ceeEEEeCCCCC-----HHHHHH--HHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEee-c
Q 014312 120 HYFLLTESPLTA-----PESREY--TGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVA-E 191 (427)
Q Consensus 120 ~~vll~e~~~~~-----~~~r~~--l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~-d 191 (427)
..+||+.|.... ..+|+. .+.-..+..|++.+.++++|.+|+++++.......+-+|+|+|.++++++-|- +
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 469999998765 445543 24555678899999999999999998874332356789999999999988773 2
Q ss_pred c----------eecccCceEeccchHHHHHHHH
Q 014312 192 G----------YVIGSSIKSIPIAGKDVTLFIQ 214 (427)
Q Consensus 192 G----------~~l~~~~~~~~~gG~~l~~~l~ 214 (427)
+ .++.++- ..+||++++..|.
T Consensus 230 ~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 2 1222222 3699999999985
No 42
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.96 E-value=6.5e-08 Score=95.17 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=124.9
Q ss_pred HhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhc
Q 014312 141 IMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 141 ~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~ 220 (427)
-++|+-++.-..++-+|+++..+.-+.+.....+++||+|+++|+++.+.+|.+....+ +|+||+++|+.+...|.
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~~--ipvgG~~vT~DIa~~l~-- 247 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTGV--IPVGGDHVTKDIAKGLK-- 247 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEee--EeeCccHHHHHHHHHhC--
Confidence 34577788777888888888887765554567899999999999999999999886544 89999999999998875
Q ss_pred CCCCCCcchHHHHHHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCC
Q 014312 221 GENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSD 300 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~ 300 (427)
.+.+.+|+||.++.....+.. +.......+.. |.....++. +....+++=. -
T Consensus 248 -------t~~~~AE~iK~~~g~a~~~~~-----------~~~~~i~v~~v--g~~~~~~~t--~~~ls~II~a------R 299 (418)
T COG0849 248 -------TPFEEAERIKIKYGSALISLA-----------DDEETIEVPSV--GSDIPRQVT--RSELSEIIEA------R 299 (418)
T ss_pred -------CCHHHHHHHHHHcCccccCcC-----------CCcceEecccC--CCcccchhh--HHHHHHHHHh------h
Confidence 677899999998875433211 01111121110 110000000 0000010000 0
Q ss_pred CCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEec--
Q 014312 301 FTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVS-- 378 (427)
Q Consensus 301 ~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-- 378 (427)
...+-+++...|++.-.. ..+-..|+||||++++||+.+-.++=+.. ..+.| .|. ++.-
T Consensus 300 -~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~---------~vRig---~P~----~~~Gl~ 360 (418)
T COG0849 300 -VEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR---------PVRLG---VPL----NIVGLT 360 (418)
T ss_pred -HHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC---------ceEeC---CCc----cccCch
Confidence 011334444455443322 56667899999999999998766544432 11222 121 1111
Q ss_pred --CCCccceeeecceeeccc
Q 014312 379 --HAIQRYAVWFGGSVLAST 396 (427)
Q Consensus 379 --~~~~~~~~W~Ggsilasl 396 (427)
..+|.|++=+|.-.++.+
T Consensus 361 d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 361 DIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred hhccCchhhhhHHHHHHHhh
Confidence 224788888888887764
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.71 E-value=3.2e-06 Score=82.88 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhc------cCCC-CCcceEEEEEcCCCceEEEEeecceecccCceEe
Q 014312 130 TAPESREYTGEIMFETFNVPGLYIAVNSVLALAAG------YTTS-KCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSI 202 (427)
Q Consensus 130 ~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~------g~~~-~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~ 202 (427)
.++...+.+.++ |+..|+.-..+..++++..-+. -... +...+.++||+|++.|+++-+.+|.++. .+.+
T Consensus 140 ~~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i 216 (348)
T TIGR01175 140 TRKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREV 216 (348)
T ss_pred ecHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEe
Confidence 366777777766 5667776555555555443222 0000 1122489999999999999999999884 5678
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecc
Q 014312 203 PIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGY 282 (427)
Q Consensus 203 ~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~ 282 (427)
++||.++++.+.+.+. .+.+.++++|....+.... . ..
T Consensus 217 ~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~~~~-~------------------------~~-------- 254 (348)
T TIGR01175 217 PFGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLPLLY-D------------------------PE-------- 254 (348)
T ss_pred echHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCCCch-h------------------------HH--------
Confidence 9999999998876542 3456788888754321100 0 00
Q ss_pred eeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHH
Q 014312 283 ERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 283 er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~ 349 (427)
+.+.. ...|..-|..+|+-.-........+.|+||||++.++||.+.|+++|.
T Consensus 255 ----~~~~~----------~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 255 ----VLRRF----------KGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ----HHHHH----------HHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 00000 012333344444322111122235789999999999999999998886
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.65 E-value=2.8e-06 Score=82.83 Aligned_cols=205 Identities=15% Similarity=0.194 Sum_probs=113.0
Q ss_pred cEEEeCCCccEEEEEcCCCCCceeeeeeEEeecccccc-cc-ccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcE
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQ-SR-SSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYN 85 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 85 (427)
++=||+|-+++|+-+... ...+|+.++........ .. ..+++. .....-.+..+..|++|+++-...... ..
T Consensus 4 v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~-~~~v~v~g~~~~~y~~G~~~~~~~~~~--~~ 77 (344)
T PRK13917 4 VMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLD-VSEFIINGNEDEVLLFGNDLDKTTNTG--KD 77 (344)
T ss_pred EEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCc-ceEEEecCcccccEEEcchhhhccccc--CC
Confidence 778999999999866422 23567777654211100 00 000000 000000111122388888763322110 00
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCC--CCCceeEE-Ee-CCCC-CHHHHHHHHHHhhhc-----------cCCC
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCD--PEDHYFLL-TE-SPLT-APESREYTGEIMFET-----------FNVP 149 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~--~~~~~vll-~e-~~~~-~~~~r~~l~e~lfe~-----------~~~~ 149 (427)
.+-.. ... .-+.+..++..++...+... .+...++| +- |... ....++.+.+.+-.. ..+.
T Consensus 78 -~~~~~-~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~ 154 (344)
T PRK13917 78 -TYSTN-DRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVK 154 (344)
T ss_pred -ccccc-ccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEE
Confidence 00011 122 23467777777764333221 12233333 32 3222 122235565554222 4567
Q ss_pred eEEEechhhhhhhhccCCCC--------CcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcC
Q 014312 150 GLYIAVNSVLALAAGYTTSK--------CEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERG 221 (427)
Q Consensus 150 ~v~~~~~~~lal~~~g~~~~--------~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~ 221 (427)
.|.+.++++.|++....... .....+|||+|+.+|.++.+.++.+.......++.|...+.+.+.+.++.+.
T Consensus 155 ~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 234 (344)
T PRK13917 155 GVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKE 234 (344)
T ss_pred EEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhC
Confidence 78999999998875532100 1234699999999999999999999988888899999999999999995443
No 45
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.65 E-value=1.2e-06 Score=84.74 Aligned_cols=200 Identities=10% Similarity=0.034 Sum_probs=118.5
Q ss_pred EeCCCccEEEEEcC-CCCC-ceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcEEeC
Q 014312 11 IDNGTGYTKMGFAG-NVEP-CFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSY 88 (427)
Q Consensus 11 lD~Gs~~~k~G~ag-~~~P-~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~ 88 (427)
||+|-+++|+-+.+ +..+ +.++||.++........ ....... .....-......|+||+.+...... ...+
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~-~~~~~~~--~~~~~v~~~g~~y~VG~~a~~~~~~----~~~~ 74 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPA-WPGGSEA--RKTVCVPVGGLFYEVGPDVSLAADT----NRAR 74 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccc-cccccCC--CceEEEEECCEEEEeccchhhcccC----ccce
Confidence 79999999987743 2333 36789888664221100 0000000 0000001345678999876432211 0111
Q ss_pred cccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhc--------cCCCeEEEechhhhh
Q 014312 89 PIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFET--------FNVPGLYIAVNSVLA 160 (427)
Q Consensus 89 Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~--------~~~~~v~~~~~~~la 160 (427)
-+.+.... -+....++.+++... +.+ ....|++--|...-...|+.+.+.+-.. +.+..+.+.|+++.|
T Consensus 75 ~~~~~~~~-~~~~~~L~~~Al~~~-~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga 151 (320)
T TIGR03739 75 QLHDEYTE-TPEYMALLRGALALS-KVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGA 151 (320)
T ss_pred eccccccC-CHHHHHHHHHHHHHh-cCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHH
Confidence 12222222 246677777776432 221 1122444444444455678887776532 577888999999988
Q ss_pred hhhccCC----CCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhc
Q 014312 161 LAAGYTT----SKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 161 l~~~g~~----~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~ 220 (427)
++..-.. .......+|||+|+.+|+++.+-++.+.......++.|...+.+.+.+.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 152 LVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred HHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 7754210 00145679999999999999888888888777788999999999999988755
No 46
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.3e-06 Score=88.80 Aligned_cols=195 Identities=14% Similarity=0.108 Sum_probs=119.8
Q ss_pred CCcEEEeCCCccEEEEEcCCC-CCceeeeeeEEeeccccccccccchhhhhhhhccCCCC-CCCeEEccccccccCCC--
Q 014312 6 RPAVVIDNGTGYTKMGFAGNV-EPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA-DLDFFIGDEAVTKSRSS-- 81 (427)
Q Consensus 6 ~~~vVlD~Gs~~~k~G~ag~~-~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vg~~~~~~~~~~-- 81 (427)
..+|=||+|+.++-+.+.... .|. ++++..+.+.-+ +..... ..+.++|..|.......
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~P----------------Svv~f~~~~~~~vG~~A~~q~~~~p~ 67 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTP----------------SVVAFSKNGEVLVGQAAKRQAVDNPE 67 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccc----------------eEEEECCCCCEEecHHHHHHhhhCCc
Confidence 357999999999999998766 555 444433332110 000011 12567776555432110
Q ss_pred -CCcEEeCcccCC------------ccCCH-HHHHHHHHHHH---hhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhh
Q 014312 82 -STYNLSYPIRHG------------QVDNW-DAMERYWQQCI---FNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFE 144 (427)
Q Consensus 82 -~~~~~~~Pi~~G------------~i~d~-~~~e~i~~~~l---~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe 144 (427)
..+.+++.+-.+ ..... +....++.++- ...|+ ..-+.++++.|.+....+|..+.+. .+
T Consensus 68 ~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~A-~~ 144 (579)
T COG0443 68 NTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKDA-AR 144 (579)
T ss_pred ceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHHH-HH
Confidence 122333333322 11111 22223333321 11232 2335699999999998887766654 55
Q ss_pred ccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEee--cce-ecccCceEeccchHHHHHHHHHHHHhc
Q 014312 145 TFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVA--EGY-VIGSSIKSIPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 145 ~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~--dG~-~l~~~~~~~~~gG~~l~~~l~~~l~~~ 220 (427)
..|++-+.+++.|.+|+|++|...+...+-+|+|+|.++++|+-|- +|. .+..+.....+||++++..|...+...
T Consensus 145 iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 145 IAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred HcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 6899999999999999999986533356889999999999999883 232 223344456899999999887766543
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.52 E-value=4.2e-06 Score=81.76 Aligned_cols=191 Identities=21% Similarity=0.211 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhhccCCCCC-----------------CceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEe--chh
Q 014312 97 NWDAMERYWQQCIFNYLRCDPE-----------------DHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIA--VNS 157 (427)
Q Consensus 97 d~~~~e~i~~~~l~~~L~~~~~-----------------~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~--~~~ 157 (427)
+.+.++..+.+=..+++..+.+ ...|+++- .+++.-+.++++ |+..|+.-..+- .-+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~-~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVEL-FEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHH-HHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHH-HHHcCCceEEEeehHHH
Confidence 3567777777766666654332 23444433 245555555554 566777644332 223
Q ss_pred hhhhhhccC---CC-CCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHH
Q 014312 158 VLALAAGYT---TS-KCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVA 233 (427)
Q Consensus 158 ~lal~~~g~---~~-~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~ 233 (427)
++-+|.... .. ....+-++||+|+..|+++-+.+|.++ ..+.+++||.++++.+.+.+. .+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~~---------i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIARELG---------IDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHTT-----------HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhcC---------CCHHHH
Confidence 333333310 00 012356899999999999999999988 456789999999998886542 345667
Q ss_pred HHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHH
Q 014312 234 RKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCI 313 (427)
Q Consensus 234 ~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i 313 (427)
+.+|..... +.+...+ +-+.. ...|..-|..++
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------------~l~~~----------~~~l~~EI~rsl 263 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------------ALRPF----------LEELAREIRRSL 263 (340)
T ss_dssp HHHHHHT-------HHH------------------------------------HHHHH----------HHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcchHHH------------------------------------HHHHH----------HHHHHHHHHHHH
Confidence 777664321 1110000 00000 012444444554
Q ss_pred HhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHH
Q 014312 314 QSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 314 ~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~ 349 (427)
+-.-......-.+.|+||||++.++||.+.|.++|.
T Consensus 264 ~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 264 DFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp HHHHHH------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred HHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 422222233345789999999999999999999885
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.66 E-value=0.00027 Score=68.31 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=68.1
Q ss_pred HHHHHHhhccCCCCCCceeEEEeCC---CCCH--HHHHHHH----HHhh-------hccCCCeEEEechhhhhhhhccCC
Q 014312 104 YWQQCIFNYLRCDPEDHYFLLTESP---LTAP--ESREYTG----EIMF-------ETFNVPGLYIAVNSVLALAAGYTT 167 (427)
Q Consensus 104 i~~~~l~~~L~~~~~~~~vll~e~~---~~~~--~~r~~l~----e~lf-------e~~~~~~v~~~~~~~lal~~~g~~ 167 (427)
...|+|.+ -++.+.+..+++.-|. .... ..++.+. .++. +.+.+..+.+.|+++.|.|..-..
T Consensus 81 av~haL~~-~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHALLK-AGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHHH-HS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 45666653 4667777777777773 1111 1222232 1221 235577889999999998875322
Q ss_pred CCCcceEEEEEcCCCceEEEEeecceecccCc-eEeccchHHHHHHHHHHHHhc
Q 014312 168 SKCEMTGVVVDVGDGATYVVPVAEGYVIGSSI-KSIPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 168 ~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~-~~~~~gG~~l~~~l~~~l~~~ 220 (427)
.+...+-+|||+|+.+|+++.|.++....+.. ...++|-..+.+.+.+.|...
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 11245789999999999999987765544433 345789999999999988763
No 49
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.60 E-value=3.4e-05 Score=66.96 Aligned_cols=188 Identities=21% Similarity=0.208 Sum_probs=112.9
Q ss_pred EeCcccCCccCCHHH----HHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhh
Q 014312 86 LSYPIRHGQVDNWDA----MERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLAL 161 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~----~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal 161 (427)
...-+++|.+.|+-. ++++.+. +.++|++.-... --..||-.... -.++.--+.|.-|...++.+++|.+++
T Consensus 59 ~advVRDGiVvdf~eaveiVrrlkd~-lEk~lGi~~tha--~taiPPGt~~~-~~ri~iNViESAGlevl~vlDEPTAaa 134 (277)
T COG4820 59 WADVVRDGIVVDFFEAVEIVRRLKDT-LEKQLGIRFTHA--ATAIPPGTEQG-DPRISINVIESAGLEVLHVLDEPTAAA 134 (277)
T ss_pred hhhhhccceEEehhhHHHHHHHHHHH-HHHhhCeEeeec--cccCCCCccCC-CceEEEEeecccCceeeeecCCchhHH
Confidence 334567888877532 3333333 456677542110 00111111000 111122245888999999999999999
Q ss_pred hhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcC
Q 014312 162 AAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYC 241 (427)
Q Consensus 162 ~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c 241 (427)
+-.+ ...|.|||+|.+.|-|.-+-+|.++..+= -+.||.+++-.|.- .+ ..+.+.+|+.|...-
T Consensus 135 ~vL~-----l~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmtLvlAG---~y------gi~~EeAE~~Kr~~k 198 (277)
T COG4820 135 DVLQ-----LDDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMTLVLAG---NY------GISLEEAEQYKRGHK 198 (277)
T ss_pred HHhc-----cCCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEEEEEec---cc------CcCHhHHHHhhhccc
Confidence 8887 78999999999999999999999986643 57888776643321 11 134556666664210
Q ss_pred cccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhH
Q 014312 242 YTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTR 321 (427)
Q Consensus 242 ~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r 321 (427)
.++ ++ |-.- .|- .....+.+..-|+.-++
T Consensus 199 ------------------------------~~~--Ei------f~~v----~PV------~eKMAeIv~~hie~~~i--- 227 (277)
T COG4820 199 ------------------------------KGE--EI------FPVV----KPV------YEKMAEIVARHIEGQGI--- 227 (277)
T ss_pred ------------------------------cch--hc------ccch----hHH------HHHHHHHHHHHhccCCC---
Confidence 011 00 0000 000 01245555555555444
Q ss_pred HHhhcCeEEecCccCcccHHHHHHHHH
Q 014312 322 RALYKNIVLSGGSTMFKDFHRRLQRDL 348 (427)
Q Consensus 322 ~~l~~nIil~GG~s~i~G~~eRL~~eL 348 (427)
..+.|+||.++.||+.+-++++|
T Consensus 228 ----~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 228 ----TDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred ----cceEEecccccCccHHHHHHHHh
Confidence 56899999999999999999998
No 50
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0026 Score=65.56 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=72.7
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC-----CCcceEEEEEcCCCceEEEEeeccee
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS-----KCEMTGVVVDVGDGATYVVPVAEGYV 194 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~-----~~~~tglVVDiG~~~t~v~pV~dG~~ 194 (427)
..++++.|++.....|..+++.. +-.|+.-+++++...+++..+|..- ...+.-++-|+|.+.|+++-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 35899999999999999887764 3467777899999988887776331 13566889999999999988842111
Q ss_pred c-------ccCceE------eccchHHHHHHHHHHHHhc
Q 014312 195 I-------GSSIKS------IPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 195 l-------~~~~~~------~~~gG~~l~~~l~~~l~~~ 220 (427)
- ...++. ..+||..++..|...|.+.
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 1 111222 3678999999999888653
No 51
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0056 Score=62.96 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=69.9
Q ss_pred ceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC--CCcceEEEEEcCCCceEEEEe-e-cce-e
Q 014312 120 HYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS--KCEMTGVVVDVGDGATYVVPV-A-EGY-V 194 (427)
Q Consensus 120 ~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~--~~~~tglVVDiG~~~t~v~pV-~-dG~-~ 194 (427)
..++++.|......+|..+-+-. ...|++.+-+++.|.+++.++|..- ....+-+|.|.|.+...|.++ + +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45889999888887777665443 4567788899999999988877321 135567999999999999887 3 343 2
Q ss_pred cccCceEeccchHHHHHHHHHHH
Q 014312 195 IGSSIKSIPIAGKDVTLFIQQLM 217 (427)
Q Consensus 195 l~~~~~~~~~gG~~l~~~l~~~l 217 (427)
+....--.++||.++++.|...+
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred hhhhcccccccchhhhHHHHHHH
Confidence 23334446899999888776654
No 52
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0064 Score=58.50 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=65.3
Q ss_pred eeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC-CCcceEEEEEcCCCceEEE--Eeecceec-c
Q 014312 121 YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS-KCEMTGVVVDVGDGATYVV--PVAEGYVI-G 196 (427)
Q Consensus 121 ~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~-~~~~tglVVDiG~~~t~v~--pV~dG~~l-~ 196 (427)
..+++.|......+|+..-+.= ---|..-+.+++.|.+|+.++|..- .+..+-||.|.|.+.-.|. .|-+|.-- .
T Consensus 174 ~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVl 252 (663)
T KOG0100|consen 174 HAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVL 252 (663)
T ss_pred ceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEE
Confidence 4678888888888887664331 1235566788999999998888643 2577889999999987776 44555411 1
Q ss_pred cCceEeccchHHHHHHHHHHH
Q 014312 197 SSIKSIPIAGKDVTLFIQQLM 217 (427)
Q Consensus 197 ~~~~~~~~gG~~l~~~l~~~l 217 (427)
.+.--..+||.+.++...+.+
T Consensus 253 aTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 253 ATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred ecCCCcccCccchHHHHHHHH
Confidence 122235789998887655543
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.11 E-value=0.0023 Score=63.58 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=82.2
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCCCC--CceeEEEeCCCCCHHHHHHHHHHhh---h-------ccCCCeEEE
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE--DHYFLLTESPLTAPESREYTGEIMF---E-------TFNVPGLYI 153 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~--~~~vll~e~~~~~~~~r~~l~e~lf---e-------~~~~~~v~~ 153 (427)
+..|+......|-+.++++.+.-| +.-++.++ +..+.++.-......+-++.++.+= . .+++.++ +
T Consensus 53 ~fTPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i-v 130 (475)
T PRK10719 53 YFTPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI-I 130 (475)
T ss_pred eecCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh-h
Confidence 346888877889999999998876 44556654 3344444444444444444444311 0 1122222 1
Q ss_pred echhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHH-----------HHHHHHhcCC
Q 014312 154 AVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLF-----------IQQLMRERGE 222 (427)
Q Consensus 154 ~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~-----------l~~~l~~~~~ 222 (427)
.++++..+.-. .+.....++||+|.+.|+++-+.+|.++.. ..+++||+++|.. .+.++++.+.
T Consensus 131 --a~~ASg~avLs-eEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~ 205 (475)
T PRK10719 131 --AGKGAGAQTLS-EERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETDSQGRVTYISPPGQMILDELGL 205 (475)
T ss_pred --hHHHhhHHHhh-hhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEECCCCCEEEEChHHHHHHHHcCC
Confidence 13333222221 123667889999999999999999998855 4589999987764 5667777666
Q ss_pred CC
Q 014312 223 NV 224 (427)
Q Consensus 223 ~~ 224 (427)
.+
T Consensus 206 ~~ 207 (475)
T PRK10719 206 AI 207 (475)
T ss_pred Cc
Confidence 53
No 54
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.94 E-value=0.032 Score=51.85 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=31.2
Q ss_pred eEEEEEcCCCceEEEEeecceecccC-ceEeccchHHHHHHHHHHH
Q 014312 173 TGVVVDVGDGATYVVPVAEGYVIGSS-IKSIPIAGKDVTLFIQQLM 217 (427)
Q Consensus 173 tglVVDiG~~~t~v~pV~dG~~l~~~-~~~~~~gG~~l~~~l~~~l 217 (427)
...|||+|.+.|.++-+.+|.+..-. ......|+...++.+.+.|
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 45699999999999999999876222 2235567666666555544
No 55
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.90 E-value=0.0046 Score=58.22 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=73.5
Q ss_pred EEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccHHHHHhh
Q 014312 174 GVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNK 253 (427)
Q Consensus 174 glVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~ 253 (427)
.+|+|||+..|.+.-+++|.++.. +..++||+++++.+.+... .+...++++|....- +.|+..+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~~~-P~~y~~~vl- 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGGTL-PTDYGSEVL- 261 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCCCC-CCchhHHHH-
Confidence 459999999999999999999954 7789999999988876543 233455555543211 111111000
Q ss_pred ccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEEecC
Q 014312 254 HDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGG 333 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil~GG 333 (427)
.|. ...|.+-|..+|+-.-.---..-...|+|+||
T Consensus 262 ---------------------------------------~~f------~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGg 296 (354)
T COG4972 262 ---------------------------------------RPF------LGELTQEIRRSLQFYLSQSEMVDIDQILLAGG 296 (354)
T ss_pred ---------------------------------------HHH------HHHHHHHHHHHHHHHHhccccceeeEEEEecC
Confidence 000 01244445555542110001112368999999
Q ss_pred ccCcccHHHHHHHHHH
Q 014312 334 STMFKDFHRRLQRDLK 349 (427)
Q Consensus 334 ~s~i~G~~eRL~~eL~ 349 (427)
++.+.|+.+-+.+.|.
T Consensus 297 gA~l~gL~~~i~qrl~ 312 (354)
T COG4972 297 GASLEGLAAAIQQRLS 312 (354)
T ss_pred CcchhhHHHHHHHHhC
Confidence 9999999999998885
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.09 E-value=0.03 Score=54.97 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=38.4
Q ss_pred hhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 324 LYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 324 l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
+-+.|+++||.+..+|+.+.|++.|.. +++.++++++..=+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~Lg~------------------------~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLLGI------------------------EVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHhCC------------------------cEEECCcccHHHHHHHHHHhc
Confidence 445699999999999999999887731 244467889999999999884
No 57
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.61 Score=48.41 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=72.3
Q ss_pred CceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCC--C-C----CcceEEEEEcCCCceEEEEe--
Q 014312 119 DHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTT--S-K----CEMTGVVVDVGDGATYVVPV-- 189 (427)
Q Consensus 119 ~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~--~-~----~~~tglVVDiG~~~t~v~pV-- 189 (427)
-..++|..|.+.+..+|..+++..= ..|+.-+-++....+++.++|.. + + ...+-+-||+||+.++++-+
T Consensus 137 v~DcvIavP~~FTd~qRravldAA~-iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF 215 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAAR-IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF 215 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHHh-hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee
Confidence 4569999999999999999987753 46778888888877777666621 1 1 24567899999999998766
Q ss_pred ecce--ecccCceEeccchHHHHHHHHHHHHhc
Q 014312 190 AEGY--VIGSSIKSIPIAGKDVTLFIQQLMRER 220 (427)
Q Consensus 190 ~dG~--~l~~~~~~~~~gG~~l~~~l~~~l~~~ 220 (427)
-.|. ++.+ ...-.+||++.++.|.+.+...
T Consensus 216 ~kG~lkvl~t-a~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 216 TKGKLKVLAT-AFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred ccCcceeeee-ecccccccchHHHHHHHHHHHH
Confidence 3343 2322 2224799999999988877654
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=94.91 E-value=0.2 Score=50.08 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred EeCcccCCccCCHHHHHHHHHHHHhhccCCCCCC--c-eeEEEeCCCCCHHHHHHHHHHhhhccCC---CeEEEechhhh
Q 014312 86 LSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPED--H-YFLLTESPLTAPESREYTGEIMFETFNV---PGLYIAVNSVL 159 (427)
Q Consensus 86 ~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~--~-~vll~e~~~~~~~~r~~l~e~lfe~~~~---~~v~~~~~~~l 159 (427)
...|+......|-+.++++.+.-| +.=++.|++ . .|++|-- ..-+++-+.+.+.|=+..|= ...----++++
T Consensus 50 ~fTPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGE-TArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsii 127 (473)
T PF06277_consen 50 YFTPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITGE-TARKENAREVLHALSGFAGDFVVATAGPDLESII 127 (473)
T ss_pred cccCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEecc-hhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHH
Confidence 346888888889999999999876 455666653 3 4555543 33444555555555443321 11111123455
Q ss_pred hhhhccCC--C-CCcceEEEEEcCCCceEEEEeecceecccCceEeccchH-----------HHHHHHHHHHHhcCCCC
Q 014312 160 ALAAGYTT--S-KCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGK-----------DVTLFIQQLMRERGENV 224 (427)
Q Consensus 160 al~~~g~~--~-~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~-----------~l~~~l~~~l~~~~~~~ 224 (427)
|..++|.. + +...+-+=||||.++|.++-+-+|.++..+. +++||+ .+..-++.++++.+..+
T Consensus 128 AgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 128 AGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred hccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 65555532 1 1245556689999999999999999996655 799998 34555777777777654
No 59
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.27 E-value=0.72 Score=47.48 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=55.5
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechh---hhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCc
Q 014312 123 LLTESPLTAPESREYTGEIMFETFNVPGLYIAVNS---VLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSI 199 (427)
Q Consensus 123 ll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~---~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~ 199 (427)
++....+-...+++..++-+.+..|++ |-++... -++..+.-.......+++|||+|.++|.++-+-+|.+. ..
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 333344445566788888888888886 4444333 33322221111112358999999999999999888766 34
Q ss_pred eEeccchHHHHHH
Q 014312 200 KSIPIAGKDVTLF 212 (427)
Q Consensus 200 ~~~~~gG~~l~~~ 212 (427)
..+++|.-.+++.
T Consensus 158 ~Sl~lG~vrl~e~ 170 (496)
T PRK11031 158 FSLSMGCVTWLER 170 (496)
T ss_pred eEEeccchHHHHH
Confidence 5689998776643
No 60
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.77 Score=46.39 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=77.4
Q ss_pred eeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEE--eecceec-cc
Q 014312 121 YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVP--VAEGYVI-GS 197 (427)
Q Consensus 121 ~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~p--V~dG~~l-~~ 197 (427)
..+++.|.+....+|+..-... .-.+..-+-.++.|.+|..++|...+....-.|-|+|.+...+.- |.+|.-. ..
T Consensus 162 ~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevks 240 (640)
T KOG0102|consen 162 NAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKS 240 (640)
T ss_pred heeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEe
Confidence 4788899888888887665443 345666667789999998888866433455679999998776653 4677533 22
Q ss_pred CceEeccchHHHHHHHHHHHHhcCC---CCCCcchHHHHHHhhh
Q 014312 198 SIKSIPIAGKDVTLFIQQLMRERGE---NVPPEDSFEVARKVKE 238 (427)
Q Consensus 198 ~~~~~~~gG~~l~~~l~~~l~~~~~---~~~~~~~~~~~~~iKe 238 (427)
+.-..-.||.++++++..++-.... .+....+.....+++|
T Consensus 241 Tngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~e 284 (640)
T KOG0102|consen 241 TNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLRE 284 (640)
T ss_pred ccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHH
Confidence 3345678999999998887743321 1222234445555555
No 61
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=93.18 E-value=0.88 Score=43.57 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=56.7
Q ss_pred CceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechh---hhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceec
Q 014312 119 DHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNS---VLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVI 195 (427)
Q Consensus 119 ~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~---~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l 195 (427)
+..++-| ..+-.-.+++.+++.+.+..|++ +-++... .+...+.-... ...+++|||+|.++|.++-+.+|.+.
T Consensus 72 ~i~~vaT-sa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~-~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 72 EVRAVAT-AALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTL-PIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred eEEEEEc-HHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCC-CCCCcEEEEecCCeEEEEEecCCCEe
Confidence 3333333 34444567788888888877775 4444333 22222211000 12357999999999999998888765
Q ss_pred ccCceEeccchHHHHHHH
Q 014312 196 GSSIKSIPIAGKDVTLFI 213 (427)
Q Consensus 196 ~~~~~~~~~gG~~l~~~l 213 (427)
....+|+|.-.+++.+
T Consensus 149 --~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 149 --EGVSLPLGCVRLTEQF 164 (300)
T ss_pred --EEEEEccceEEhHHhh
Confidence 4457899998777654
No 62
>PRK10854 exopolyphosphatase; Provisional
Probab=92.66 E-value=1.3 Score=45.78 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=52.7
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhccCCCeEEEech---hhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCc
Q 014312 123 LLTESPLTAPESREYTGEIMFETFNVPGLYIAVN---SVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSI 199 (427)
Q Consensus 123 ll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~---~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~ 199 (427)
++....+-...+++..++-+.+..|++ +-++.. +-++..+.-...+....++|||+|.++|.++-+-+|.+.. .
T Consensus 86 ~vATsAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~ 162 (513)
T PRK10854 86 IVGTHTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--V 162 (513)
T ss_pred EEehHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--e
Confidence 333334445566788888888888886 444433 2333222211111124689999999999999998886553 3
Q ss_pred eEeccchHHHHH
Q 014312 200 KSIPIAGKDVTL 211 (427)
Q Consensus 200 ~~~~~gG~~l~~ 211 (427)
..+++|.-.+++
T Consensus 163 ~S~~lG~vrl~e 174 (513)
T PRK10854 163 ESRRMGCVSFAQ 174 (513)
T ss_pred EEEecceeeHHh
Confidence 345777765555
No 63
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.88 E-value=1.3 Score=45.17 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhhhccCCCeEEEe---chhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchH
Q 014312 131 APESREYTGEIMFETFNVPGLYIA---VNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGK 207 (427)
Q Consensus 131 ~~~~r~~l~e~lfe~~~~~~v~~~---~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~ 207 (427)
.-.+.+...+.+-+.+|++ +.++ .++-++.+++...-.....++|+|+|.++|.++-+-+..+. ....+|+|.-
T Consensus 86 ~A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v 162 (492)
T COG0248 86 DAPNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCV 162 (492)
T ss_pred cCCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceE
Confidence 3344555666666777876 4443 33333333332111115689999999999999888655544 3445777765
Q ss_pred HHHHHH
Q 014312 208 DVTLFI 213 (427)
Q Consensus 208 ~l~~~l 213 (427)
.+++.+
T Consensus 163 ~lt~~~ 168 (492)
T COG0248 163 RLTERF 168 (492)
T ss_pred Eeehhh
Confidence 555433
No 64
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.77 E-value=1.4 Score=35.93 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=39.9
Q ss_pred EEEEcCCCceEEEEeecceecccCceEeccc--------hHHHH--HHHHHHHHhcCCCCCCcchHHHHHHh-hhhcCc
Q 014312 175 VVVDVGDGATYVVPVAEGYVIGSSIKSIPIA--------GKDVT--LFIQQLMRERGENVPPEDSFEVARKV-KEMYCY 242 (427)
Q Consensus 175 lVVDiG~~~t~v~pV~dG~~l~~~~~~~~~g--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-Ke~~c~ 242 (427)
++||+|.+.|.++-...|.... +..+++| |..++ +.+.+-++ ...+.+|++ |.++..
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~---------~a~~~AE~~~k~~i~~ 69 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIK---------IAIEEAERLAKCEIGS 69 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHH---------HHHHHHHHHhCCeeeE
Confidence 6899999999999888876654 6678999 99999 88887775 345667777 766543
No 65
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=86.74 E-value=0.32 Score=45.22 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=38.5
Q ss_pred cCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeec
Q 014312 326 KNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLA 394 (427)
Q Consensus 326 ~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsila 394 (427)
.+|+++||.+.-+|+.+.|+++|... ...+.+..++++++..=+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-------------------~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-------------------KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-------------------CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998531 113445556778888888988765
No 66
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=85.97 E-value=13 Score=35.80 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.6
Q ss_pred cceEEEEEcCCCceEEEEeecceeccc
Q 014312 171 EMTGVVVDVGDGATYVVPVAEGYVIGS 197 (427)
Q Consensus 171 ~~tglVVDiG~~~t~v~pV~dG~~l~~ 197 (427)
..+++++|+|..+|+|+||.+|.+...
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 568999999999999999999998754
No 67
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=84.83 E-value=2.9 Score=39.19 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=33.4
Q ss_pred eEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeec
Q 014312 328 IVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLA 394 (427)
Q Consensus 328 Iil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsila 394 (427)
|+++||...-..+.+.|++.|.+.++.. . +..+..+++.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~-----------------~--~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV-----------------P--IIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC-----------------T--CECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC-----------------c--eEECCCCCccHHHHHHHhC
Confidence 9999999888878777777776655320 1 1223456788999998875
No 68
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=82.26 E-value=20 Score=33.18 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=16.0
Q ss_pred cEEEeCCCccEEEEEcCCC
Q 014312 8 AVVIDNGTGYTKMGFAGNV 26 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~ 26 (427)
-++||+|-.+++.|+-.+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 3789999999999988743
No 69
>PRK13324 pantothenate kinase; Reviewed
Probab=81.29 E-value=32 Score=32.09 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.9
Q ss_pred cEEEeCCCccEEEEEcCCC
Q 014312 8 AVVIDNGTGYTKMGFAGNV 26 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~ 26 (427)
.+.||+|-.++|.|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 4789999999999987543
No 70
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=80.91 E-value=1.7 Score=41.32 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCceEEEEeecceecc
Q 014312 171 EMTGVVVDVGDGATYVVPVAEGYVIG 196 (427)
Q Consensus 171 ~~tglVVDiG~~~t~v~pV~dG~~l~ 196 (427)
..++++||+|..+|+|.+|.||.+..
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeec
Confidence 67999999999999999999999863
No 71
>PRK13317 pantothenate kinase; Provisional
Probab=79.78 E-value=1.1 Score=42.23 Aligned_cols=51 Identities=20% Similarity=0.093 Sum_probs=38.8
Q ss_pred hhcCeEEec-CccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 324 LYKNIVLSG-GSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 324 l~~nIil~G-G~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
-.++|+++| |.+..|++.++|.+.++.. ..+++.+++++|..=+||++++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~---------------------~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLR---------------------NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcC---------------------CceEEecCCCchhHHHHHHHHhh
Confidence 347999999 7999999999998766421 23445567788999999988764
No 72
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=79.49 E-value=0.9 Score=44.59 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=40.1
Q ss_pred hhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeec
Q 014312 324 LYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLA 394 (427)
Q Consensus 324 l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsila 394 (427)
+-..|+++||.+.-+|+.+.|++.|....+ ..+|+.++++++..=+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~-------------------~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG-------------------EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC-------------------CCeEecCCCccHHHHHHHHHhC
Confidence 456899999999999999999988854210 1245557788999899998875
No 73
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=79.19 E-value=0.7 Score=43.69 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=38.5
Q ss_pred HhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 323 ALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 323 ~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
.+-..|+++||.+.-+|+.+.|+++|.. ++.+ .++++++..=+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~----------------------~v~~-~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI----------------------KAVD-TKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC----------------------Ccee-CCCCccHHHHHHHHHHHH
Confidence 4556799999999999999999888842 1111 245688999999999884
No 74
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=78.56 E-value=1.4 Score=42.74 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=37.2
Q ss_pred eEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecc
Q 014312 328 IVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLAS 395 (427)
Q Consensus 328 Iil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilas 395 (427)
||++||+++..++.+-|++.|. .+|+.|+.+++..-+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg------------------------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG------------------------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC------------------------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999998887774 3456678889999999999885
No 75
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=78.10 E-value=13 Score=34.73 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhhhccCCCeEEEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEe-ecceecccCceEeccchHHH
Q 014312 131 APESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPV-AEGYVIGSSIKSIPIAGKDV 209 (427)
Q Consensus 131 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV-~dG~~l~~~~~~~~~gG~~l 209 (427)
.+-.-+.+++.+=+.++++.---..++-+|..+.-++-.-..--.|+|+|.++|+..-| -+|.+. ..++-=+|+-+
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mV 169 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMV 169 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhh
Confidence 34455778888889999997777788888877664321012234689999999998877 455433 24456678888
Q ss_pred HHHHHHHHHhcCCCCCCcchHHHHHHhhh
Q 014312 210 TLFIQQLMRERGENVPPEDSFEVARKVKE 238 (427)
Q Consensus 210 ~~~l~~~l~~~~~~~~~~~~~~~~~~iKe 238 (427)
|..+..-|- . .+.+++|+||.
T Consensus 170 TmlI~sELG---l-----~d~~lAE~IKk 190 (332)
T PF08841_consen 170 TMLINSELG---L-----EDRELAEDIKK 190 (332)
T ss_dssp HHHHHHHCT---------S-HHHHHHHHH
T ss_pred HHHHHHhhC---C-----CCHHHHHHhhh
Confidence 877776553 1 47789999996
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=75.76 E-value=25 Score=33.75 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=78.7
Q ss_pred CcccCCccCCHHHHHHHHHHHHhhccCCCCCC---ceeEEEeCCCCCHHHHHHHHHH--hhhccCCCeEEEechhhhhhh
Q 014312 88 YPIRHGQVDNWDAMERYWQQCIFNYLRCDPED---HYFLLTESPLTAPESREYTGEI--MFETFNVPGLYIAVNSVLALA 162 (427)
Q Consensus 88 ~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~---~~vll~e~~~~~~~~r~~l~e~--lfe~~~~~~v~~~~~~~lal~ 162 (427)
.|+..---.|.++++.+...-+ ..-++.|++ -.|+++-.....+..|+-+.-+ +.-.|=+...--.-+++-|--
T Consensus 54 TPv~~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGk 132 (473)
T COG4819 54 TPVDKQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGK 132 (473)
T ss_pred eeecccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccC
Confidence 4655433456677777766544 345666653 3566665544333333322211 111111111111111222222
Q ss_pred hccCC--CC-CcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHH------------HHHHHHHHhcCCCCCCc
Q 014312 163 AGYTT--SK-CEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVT------------LFIQQLMRERGENVPPE 227 (427)
Q Consensus 163 ~~g~~--~~-~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~------------~~l~~~l~~~~~~~~~~ 227 (427)
+.|.. ++ +.+.-+=+|+|.+.|...-+-.|.+...++ +++||+.+- .-...++.+.+..+...
T Consensus 133 GaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLik~drst~~v~Yi~~k~q~lI~~~g~~it~g 210 (473)
T COG4819 133 GAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLIKTDRSTGRVVYIHKKGQMLIDECGGAITDG 210 (473)
T ss_pred CccccchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEEEEeecccceEEEEccchHHHHHHcCCCcchh
Confidence 22321 11 233344589999999999999999887665 799998442 23455566655543211
Q ss_pred ----------chHHHHHHhhhhcCcccc
Q 014312 228 ----------DSFEVARKVKEMYCYTCS 245 (427)
Q Consensus 228 ----------~~~~~~~~iKe~~c~v~~ 245 (427)
...++++-+++...|-++
T Consensus 211 ~k~~~~~l~~v~~emaell~~~v~~ga~ 238 (473)
T COG4819 211 RKLTGAQLVQVTREMAELLVEVVDFGAL 238 (473)
T ss_pred hccCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 123456666666554443
No 77
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=74.76 E-value=2.6 Score=38.67 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCceEEEEeecce
Q 014312 171 EMTGVVVDVGDGATYVVPVAEGY 193 (427)
Q Consensus 171 ~~tglVVDiG~~~t~v~pV~dG~ 193 (427)
..+++.||+|..+|+++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 45899999999999999999996
No 78
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=72.58 E-value=43 Score=30.93 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.5
Q ss_pred EEEeCCCccEEEEEcCCC
Q 014312 9 VVIDNGTGYTKMGFAGNV 26 (427)
Q Consensus 9 vVlD~Gs~~~k~G~ag~~ 26 (427)
++||+|-.++|+|+-.++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987654
No 79
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=72.34 E-value=6.1 Score=37.38 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=54.3
Q ss_pred EEeCCCCCHHHHHHHHHHhhhccCCCeEEEechh---hhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceecccCce
Q 014312 124 LTESPLTAPESREYTGEIMFETFNVPGLYIAVNS---VLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIK 200 (427)
Q Consensus 124 l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~---~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~ 200 (427)
+....+-.-.+++.+++.+.+..|++ +-++... .++..+.-..-....+++|+|+|.++|.++.+-+|.+.. ..
T Consensus 62 vATsA~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~ 138 (285)
T PF02541_consen 62 VATSALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQ 138 (285)
T ss_dssp EEEHHHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EE
T ss_pred EhhHHHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--ee
Confidence 33333444456778888888888886 4444332 222211100000267899999999999999999998774 46
Q ss_pred EeccchHHHHHHH
Q 014312 201 SIPIAGKDVTLFI 213 (427)
Q Consensus 201 ~~~~gG~~l~~~l 213 (427)
.+|+|.-.+++.+
T Consensus 139 Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 139 SLPLGAVRLTERF 151 (285)
T ss_dssp EES--HHHHHHHH
T ss_pred eeehHHHHHHHHH
Confidence 6899998877665
No 80
>PRK13321 pantothenate kinase; Reviewed
Probab=71.42 E-value=64 Score=29.95 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.9
Q ss_pred EEEeCCCccEEEEEcCCC
Q 014312 9 VVIDNGTGYTKMGFAGNV 26 (427)
Q Consensus 9 vVlD~Gs~~~k~G~ag~~ 26 (427)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998654
No 81
>PRK13318 pantothenate kinase; Reviewed
Probab=69.38 E-value=60 Score=30.13 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.6
Q ss_pred cEEEeCCCccEEEEEcCC
Q 014312 8 AVVIDNGTGYTKMGFAGN 25 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~ 25 (427)
.+.||+|...+|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999998763
No 82
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=68.82 E-value=8.5 Score=35.84 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCceEEEEeecceecccCceEe----ccchHHHHHHHHHHHH
Q 014312 172 MTGVVVDVGDGATYVVPVAEGYVIGSSIKSI----PIAGKDVTLFIQQLMR 218 (427)
Q Consensus 172 ~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~----~~gG~~l~~~l~~~l~ 218 (427)
.+-+.|.+|...|.++.|.+|.++...--+. ..||-.++..+.-.|.
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence 3457899999999999999999886533322 4555556655555554
No 83
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=68.16 E-value=62 Score=28.90 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred EEEeCCCccEEEEEcCCC
Q 014312 9 VVIDNGTGYTKMGFAGNV 26 (427)
Q Consensus 9 vVlD~Gs~~~k~G~ag~~ 26 (427)
++||+|-..+|.|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 689999999999998665
No 84
>PRK13326 pantothenate kinase; Reviewed
Probab=66.47 E-value=82 Score=29.46 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=16.9
Q ss_pred cEEEeCCCccEEEEEcCCC
Q 014312 8 AVVIDNGTGYTKMGFAGNV 26 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~ 26 (427)
-++||+|-.++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998765
No 85
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=53.55 E-value=62 Score=30.01 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhccCCCeEEEechhhhhhhhccCCC--CCcceEEEEEcCCCceEEEEeecceec
Q 014312 134 SREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTS--KCEMTGVVVDVGDGATYVVPVAEGYVI 195 (427)
Q Consensus 134 ~r~~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~~--~~~~tglVVDiG~~~t~v~pV~dG~~l 195 (427)
.|-+.+.--....+... ++.+...+|+++.-... ......+|||+|.+.|-..-|.+|.+.
T Consensus 128 TRm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 128 TRMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred HHHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 34444433444455554 77788888777654211 125688999999999999999998865
No 86
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=51.55 E-value=8.9 Score=31.06 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=16.6
Q ss_pred cEEEeCCCccEEEEEcCCCCCc
Q 014312 8 AVVIDNGTGYTKMGFAGNVEPC 29 (427)
Q Consensus 8 ~vVlD~Gs~~~k~G~ag~~~P~ 29 (427)
.++||+|+.++++-.+....+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~ 22 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG 22 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCC
Confidence 3789999999999877765444
No 87
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=48.78 E-value=14 Score=36.33 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=19.6
Q ss_pred hcCeEEecCccCcccHHHHHHHHHH
Q 014312 325 YKNIVLSGGSTMFKDFHRRLQRDLK 349 (427)
Q Consensus 325 ~~nIil~GG~s~i~G~~eRL~~eL~ 349 (427)
...|+||||++.=+-|.+||++.|.
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred CceEEEECCCcCCHHHHHHHHhhCC
Confidence 3579999999999999999988774
No 88
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=45.14 E-value=68 Score=28.06 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.3
Q ss_pred cccCCccCCHHHHHHHHHHHHh
Q 014312 89 PIRHGQVDNWDAMERYWQQCIF 110 (427)
Q Consensus 89 Pi~~G~i~d~~~~e~i~~~~l~ 110 (427)
-+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 4789999999998888887764
No 89
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=41.30 E-value=52 Score=30.01 Aligned_cols=45 Identities=7% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+|+| ..+++||+|+-....+.+++++|+++|-|.||=.
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGDM 118 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhhh
Confidence 44555555554 4578999999888889999999999999998863
No 90
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=40.30 E-value=3e+02 Score=26.04 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=40.8
Q ss_pred HHHHHhhhccCCCeEEEechhhhhhhhccC--CCCCcceEEEEEcCCCceEEEEeecceeccc
Q 014312 137 YTGEIMFETFNVPGLYIAVNSVLALAAGYT--TSKCEMTGVVVDVGDGATYVVPVAEGYVIGS 197 (427)
Q Consensus 137 ~l~e~lfe~~~~~~v~~~~~~~lal~~~g~--~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~ 197 (427)
.+.+.+=+.|++| +++.+..-+++++--. ..++..+.++|.+|.+. -..-|.+|.++..
T Consensus 88 ~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 88 PLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred CHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 3556666788998 7788887776653210 00125789999999876 6777889988763
No 91
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=40.16 E-value=52 Score=30.59 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=.
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 45666666665 3478999999888888999999999999988754
No 92
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=40.07 E-value=53 Score=30.57 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd~ 118 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGDM 118 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhhh
Confidence 45555555555 3578999999888889999999999999998753
No 93
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=39.60 E-value=54 Score=30.41 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 44555555555 347899999988888999999999999998875
No 94
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=39.35 E-value=56 Score=30.26 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=.
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGDK 118 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 45555555554 3578999999888889999999999999988753
No 95
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=38.85 E-value=41 Score=25.80 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=34.6
Q ss_pred cCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccC
Q 014312 91 RHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFN 147 (427)
Q Consensus 91 ~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~ 147 (427)
..|++.|...+++.++.+.. . =+|..|.-.+++. ...-|.|++.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~-~-----lDh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVD-R-----LDHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHH-h-----CCCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 47999999999999987543 2 2455555444443 2356899999998753
No 96
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=38.67 E-value=56 Score=30.38 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45555555554 357899999988888999999999999998875
No 97
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.48 E-value=1.9e+02 Score=27.10 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=27.3
Q ss_pred EEechhhhhhhhccCCCCCcceEEEEEcCCCceEEEEeecceec
Q 014312 152 YIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVI 195 (427)
Q Consensus 152 ~~~~~~~lal~~~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l 195 (427)
++..+-.++.+++-... ...-++|||+|.+.|...-|-++++.
T Consensus 208 v~mDskfaav~gal~dp-aa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 208 VAMDSKFAAVMGALVDP-AADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEcchhHhhhhcccCc-ccCceEEEEccCCceEEEEecCCeEE
Confidence 34444444444332221 24578999999999999888777643
No 98
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=38.11 E-value=58 Score=30.29 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45555555554 367899999998888999999999999998875
No 99
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=37.63 E-value=62 Score=29.50 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=
T Consensus 74 dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 45555555555 357899999988888999999999999998875
No 100
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=37.37 E-value=59 Score=30.23 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455555554 457899999988888899999999999998875
No 101
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=37.23 E-value=59 Score=30.24 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45555555555 357899999988888999999999999998875
No 102
>PRK09557 fructokinase; Reviewed
Probab=36.61 E-value=48 Score=31.48 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=37.8
Q ss_pred HHHHHhhhccCCCeEEEechhhhhhhhccCC--CCCcceEEEEEcCCCceEEEEeecceeccc
Q 014312 137 YTGEIMFETFNVPGLYIAVNSVLALAAGYTT--SKCEMTGVVVDVGDGATYVVPVAEGYVIGS 197 (427)
Q Consensus 137 ~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~--~~~~~tglVVDiG~~~t~v~pV~dG~~l~~ 197 (427)
.+.+.+-+.|++| +++.+..-+++++--.. .+...+.+.|.+|.+ .-..-|.+|.++..
T Consensus 87 ~l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv~~G~l~~G 147 (301)
T PRK09557 87 PLDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVAINGRVHIG 147 (301)
T ss_pred CHHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEEECCEEEec
Confidence 3445555677888 77788777766543111 012567778888865 46667779988754
No 103
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=36.49 E-value=65 Score=29.85 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 45555555665 3478999999888888999999999999988753
No 104
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=36.12 E-value=66 Score=29.38 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||-.
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 118 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGDM 118 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhHH
Confidence 44555555554 4578999999888889999999999999988753
No 105
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=36.02 E-value=65 Score=29.95 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=.
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 34455555554 3578999999988889999999999999988753
No 106
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=34.69 E-value=71 Score=29.23 Aligned_cols=44 Identities=23% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44555555554 357899999988888899999999999998875
No 107
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=33.97 E-value=47 Score=31.34 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHHHhhhccCCCeEEEechhhhhhhhccCC-CCCcceEEEEEcCCCceEEEEeecceeccc
Q 014312 138 TGEIMFETFNVPGLYIAVNSVLALAAGYTT-SKCEMTGVVVDVGDGATYVVPVAEGYVIGS 197 (427)
Q Consensus 138 l~e~lfe~~~~~~v~~~~~~~lal~~~g~~-~~~~~tglVVDiG~~~t~v~pV~dG~~l~~ 197 (427)
+.+.+=+.|++| +++.+..-+++++-... .+...+-+.|.+|++. -..-|.+|.++..
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~Gi-G~giv~~G~~~~G 146 (291)
T PRK05082 88 LVQTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGV-GGGIVLNGKLLTG 146 (291)
T ss_pred hHHHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCc-ceEEEECCEEeeC
Confidence 444444667888 78888777766542110 1125678899998764 5666779987754
No 108
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=33.19 E-value=46 Score=31.57 Aligned_cols=59 Identities=8% Similarity=-0.148 Sum_probs=38.3
Q ss_pred HHHHHhhhccCCCeEEEechhhhhhhhccCC--CCCcceEEEEEcCCCceEEEEeecceeccc
Q 014312 137 YTGEIMFETFNVPGLYIAVNSVLALAAGYTT--SKCEMTGVVVDVGDGATYVVPVAEGYVIGS 197 (427)
Q Consensus 137 ~l~e~lfe~~~~~~v~~~~~~~lal~~~g~~--~~~~~tglVVDiG~~~t~v~pV~dG~~l~~ 197 (427)
.+.+.|=+.|++| |++.+..-+++++-... .++..+.+.|.+|.+. -..-|.+|.++.-
T Consensus 87 ~l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv~~G~l~~G 147 (303)
T PRK13310 87 PLRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVFNGKPISG 147 (303)
T ss_pred cHHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEEECCEEeeC
Confidence 3445555678898 77888776665432110 0125688889998764 6777789987754
No 109
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=32.41 E-value=78 Score=29.55 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||-.
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~~ 118 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGDK 118 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 44555555554 3478999999888888999999999999988753
No 110
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=31.57 E-value=86 Score=28.57 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-+.||-.
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 45555555554 3478999999888889999999999999988754
No 111
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=30.57 E-value=49 Score=32.56 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred cCeEEecCccCcccHHHHHHHHH
Q 014312 326 KNIVLSGGSTMFKDFHRRLQRDL 348 (427)
Q Consensus 326 ~nIil~GG~s~i~G~~eRL~~eL 348 (427)
+.|++|||++.=|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999998887
No 112
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=29.78 E-value=96 Score=28.82 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-....+.+.+++|+++|-|.||=.
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHH
Confidence 44555555554 3478999999888888999999999999988753
No 113
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=28.42 E-value=1e+02 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCC-CHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLT-APESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-.... +.+++++|+++|-|.||=.
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 44555555554 357899999877666 6899999999999988753
No 114
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=27.78 E-value=1e+02 Score=28.77 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCC-CHHHHHHHHHHhhhccCCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLT-APESREYTGEIMFETFNVP 149 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lfe~~~~~ 149 (427)
|.++.|=+++| ..+++||+|+-.... +.+++++|+++|-|.||=.
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGDM 121 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 45555555555 347899999876666 7899999999999998863
No 115
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=27.63 E-value=1e+02 Score=18.35 Aligned_cols=21 Identities=10% Similarity=0.526 Sum_probs=15.2
Q ss_pred EEecCccCcccHHHHHHHHHHHH
Q 014312 329 VLSGGSTMFKDFHRRLQRDLKKI 351 (427)
Q Consensus 329 il~GG~s~i~G~~eRL~~eL~~~ 351 (427)
|=|||.| |-|..+|.++|...
T Consensus 9 ISTnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 9 ISTNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp EEESSS---HHHHHHHHHHHHHH
T ss_pred EECCCCC--hHHHHHHHHHHHHh
Confidence 4577766 88888888888764
No 116
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.26 E-value=64 Score=34.61 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEEcCCCceEEEEeecceecc
Q 014312 174 GVVVDVGDGATYVVPVAEGYVIG 196 (427)
Q Consensus 174 glVVDiG~~~t~v~pV~dG~~l~ 196 (427)
++++|+|..+|++.-+.+|.+..
T Consensus 280 ~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 280 AIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred EEEEEcCCcceeeeeeecCcEEe
Confidence 99999999999999999888663
No 117
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=24.92 E-value=6.7e+02 Score=25.75 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred EEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCCcEEeC
Q 014312 9 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSY 88 (427)
Q Consensus 9 vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~ 88 (427)
||||.||.-+|+ +-..|
T Consensus 12 iviDaGSSgTrl---------------------------------------------------------------~Vy~w 28 (501)
T KOG1386|consen 12 IVIDAGSSGTRL---------------------------------------------------------------FVYKW 28 (501)
T ss_pred EEEecCCCCceE---------------------------------------------------------------EEEee
Q ss_pred cccCCc-cCC-------------------------HHHHHHHHHHHHhhccCCCCCCceeEEEeCCCC---CHHHHHHHH
Q 014312 89 PIRHGQ-VDN-------------------------WDAMERYWQQCIFNYLRCDPEDHYFLLTESPLT---APESREYTG 139 (427)
Q Consensus 89 Pi~~G~-i~d-------------------------~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~---~~~~r~~l~ 139 (427)
|...|. +.+ -+.+..+++.+-...=+-...+.||.|--..-+ +...++.+.
T Consensus 29 ~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl 108 (501)
T KOG1386|consen 29 PAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAIL 108 (501)
T ss_pred cccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHH
Q ss_pred HHhhhccCCCeEEEechhhh---------------hhhhccCCCC------CcceEEEEEcCCCceEEEEeec---ceec
Q 014312 140 EIMFETFNVPGLYIAVNSVL---------------ALAAGYTTSK------CEMTGVVVDVGDGATYVVPVAE---GYVI 195 (427)
Q Consensus 140 e~lfe~~~~~~v~~~~~~~l---------------al~~~g~~~~------~~~tglVVDiG~~~t~v~pV~d---G~~l 195 (427)
+.+-..+...+=+..+..-+ +=|..|+=++ +..|-=.+|+|.++|+|+=+.. -..-
T Consensus 109 ~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~~~e~~~ 188 (501)
T KOG1386|consen 109 EVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPPNQQEEVP 188 (501)
T ss_pred HHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceeeeEecCCceeEEEEecCccccccc
Q ss_pred ccCceEeccc
Q 014312 196 GSSIKSIPIA 205 (427)
Q Consensus 196 ~~~~~~~~~g 205 (427)
...++.+.+|
T Consensus 189 ~~~~~~i~~G 198 (501)
T KOG1386|consen 189 KENLQTINYG 198 (501)
T ss_pred hhhhhheecC
No 118
>PLN02223 phosphoinositide phospholipase C
Probab=24.62 E-value=1.3e+02 Score=31.31 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~ 148 (427)
+.++.|=+|+|. .++++||+|+-....+.+.+.+|++++-+.||=
T Consensus 179 ~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 456666666662 234899999988888999999999999988875
No 119
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.98 E-value=1.2e+02 Score=28.23 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEEEeCCCC-CHHHHHHHHHHhhhccCC
Q 014312 99 DAMERYWQQCIFNYLRCDPEDHYFLLTESPLT-APESREYTGEIMFETFNV 148 (427)
Q Consensus 99 ~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lfe~~~~ 148 (427)
|.++.|=+++| ..+++||+|+-.... +.+++++|+++|-|.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 347899999877666 689999999999998875
No 120
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=23.59 E-value=38 Score=21.54 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=10.9
Q ss_pred cccccc-ccchHHHhh
Q 014312 397 PEFFAA-CHTKAEYEE 411 (427)
Q Consensus 397 ~~f~~~-~itk~eY~e 411 (427)
..|-.. |||++||+|
T Consensus 19 ~~~V~~g~IT~eey~e 34 (40)
T PF09693_consen 19 KNFVEAGWITKEEYKE 34 (40)
T ss_pred HHHhhcCeECHHHHHH
Confidence 344444 899999987
No 121
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=23.02 E-value=88 Score=25.46 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=33.4
Q ss_pred cCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccC
Q 014312 91 RHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFN 147 (427)
Q Consensus 91 ~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~ 147 (427)
..|++.|...++++++.++...| +|..|.-.++......-|.++..+++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 47999999999999988664322 45555533321112245788888887654
No 122
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.97 E-value=19 Score=29.09 Aligned_cols=72 Identities=14% Similarity=0.319 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccccchHHHhhcCcceee
Q 014312 340 FHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICR 418 (427)
Q Consensus 340 ~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~itk~eY~e~G~~~~~ 418 (427)
+..+|++|+...... ...|.++.|+.+.|.+.+.+..++.+| +-.+...|..+-.-.+..+.|.=.|+-.|+
T Consensus 29 Ia~~L~remd~~a~~------~~~~r~~aPN~y~V~Ls~~D~~~l~~~-~~~l~~el~~~l~~~a~~qgy~~~G~v~V~ 100 (116)
T PF12401_consen 29 IAKALRREMDDQARV------VSRGRTLAPNVYTVELSPEDYERLSPW-GDRLARELADYLAEHAREQGYTFVGPVTVE 100 (116)
T ss_dssp HHHHHHHHHHHT-B---------TT--B---EEEEEEEHHHHHHH-S--SHHHHHHHHHHHHHHHHHHT-B-SS--EEE
T ss_pred HHHHHHHHHHhCCee------cCCCCEEcCeeEEEEECHHHHHHHhhh-HHHHHHHHHHHHHHHHHHCCCeecCCEEEE
Confidence 566677777654210 011223357888888877666778899 777777788777788899999988887654
No 123
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=21.68 E-value=98 Score=29.47 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCChhhHHHhhcCeEEecCccC-cccHHHHHHHHHHHH
Q 014312 305 LPAVIDKCIQSAPIDTRRALYKNIVLSGGSTM-FKDFHRRLQRDLKKI 351 (427)
Q Consensus 305 l~~~i~~~i~~~~~d~r~~l~~nIil~GG~s~-i~G~~eRL~~eL~~~ 351 (427)
|..+|.+.+.-+++ +.|||.|+.+. .+-|.+++++.++..
T Consensus 239 L~~~i~~~~~~~dP-------~~IvlgG~~~~~~~~~~~~i~~~~~~~ 279 (318)
T TIGR00744 239 AGAGLADLASLFNP-------SAIVLGGGLSDAGDLLLDPIRKSYKRW 279 (318)
T ss_pred HHHHHHHHHHHhCC-------CEEEECChhhhCcHHHHHHHHHHHHHH
Confidence 45555555554544 35777777654 355777777777654
No 124
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=20.60 E-value=49 Score=21.76 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.1
Q ss_pred ccccc-cccchHHHhh
Q 014312 397 PEFFA-ACHTKAEYEE 411 (427)
Q Consensus 397 ~~f~~-~~itk~eY~e 411 (427)
..|-. .|||++||+|
T Consensus 24 ~~~V~~~~IT~eey~e 39 (45)
T TIGR01669 24 NKFVEKKLITREQYKV 39 (45)
T ss_pred HHHhhcCccCHHHHHH
Confidence 44555 4999999987
No 125
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=20.46 E-value=2e+02 Score=26.34 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEE
Q 014312 116 DPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYI 153 (427)
Q Consensus 116 ~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~ 153 (427)
..+++||+|+-....+.+.+++++++|-+.||- .++.
T Consensus 85 ~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lGd-~L~~ 121 (228)
T cd08599 85 TASEYPVIITLENHLSPELQAKAAQILRETLGD-KLFY 121 (228)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhh-hhcc
Confidence 357899999888778889999999999999983 4443
Done!