Your job contains 1 sequence.
>014314
MGETRDNEYEDELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID
TSTYMPS
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014314
(427 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2147987 - symbol:UAP56a "homolog of human UAP5... 1983 5.4e-205 1
TAIR|locus:2148027 - symbol:UAP56b "homolog of human UAP5... 1096 6.3e-203 2
ZFIN|ZDB-GENE-040426-2902 - symbol:ddx39ab "DEAD (Asp-Glu... 1565 1.1e-160 1
UNIPROTKB|Q13838 - symbol:DDX39B "Spliceosome RNA helicas... 1561 2.8e-160 1
UNIPROTKB|Q29024 - symbol:DDX39B "Spliceosome RNA helicas... 1561 2.8e-160 1
UNIPROTKB|Q3T147 - symbol:DDX39B "Spliceosome RNA helicas... 1560 3.6e-160 1
UNIPROTKB|F1SCH3 - symbol:DDX39A "Uncharacterized protein... 1560 3.6e-160 1
UNIPROTKB|Q5WR10 - symbol:DDX39B "Spliceosome RNA helicas... 1559 4.6e-160 1
UNIPROTKB|E2QY95 - symbol:DDX39A "Uncharacterized protein... 1558 5.9e-160 1
UNIPROTKB|Q5E970 - symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) b... 1556 9.6e-160 1
MGI|MGI:99240 - symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box... 1556 9.6e-160 1
RGD|70923 - symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box pol... 1556 9.6e-160 1
MGI|MGI:1915528 - symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) bo... 1554 1.6e-159 1
UNIPROTKB|O00148 - symbol:DDX39A "ATP-dependent RNA helic... 1553 2.0e-159 1
RGD|619920 - symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box po... 1550 4.1e-159 1
UNIPROTKB|Q5ZHZ0 - symbol:DDX39B "Spliceosome RNA helicas... 1548 6.8e-159 1
ZFIN|ZDB-GENE-030131-4275 - symbol:ddx39aa "DEAD (Asp-Glu... 1544 1.8e-158 1
POMBASE|SPAC17G6.14c - symbol:uap56 "ATP-dependent RNA he... 1532 3.3e-157 1
ZFIN|ZDB-GENE-040426-1259 - symbol:ddx39b "DEAD (Asp-Glu-... 1532 3.3e-157 1
UNIPROTKB|F8VQ10 - symbol:DDX39B "Spliceosome RNA helicas... 1516 1.7e-155 1
FB|FBgn0014189 - symbol:Hel25E "Helicase at 25E" species:... 1501 6.5e-154 1
WB|WBGene00001840 - symbol:hel-1 species:6239 "Caenorhabd... 1474 4.7e-151 1
UNIPROTKB|A4RBS3 - symbol:SUB2 "ATP-dependent RNA helicas... 1431 1.7e-146 1
UNIPROTKB|Q5STU3 - symbol:DDX39B "Spliceosome RNA helicas... 1384 1.6e-141 1
SGD|S000002242 - symbol:SUB2 "Component of the TREX compl... 1380 4.3e-141 1
DICTYBASE|DDB_G0269932 - symbol:uap56 "ATP-dependent RNA ... 1375 1.5e-140 1
GENEDB_PFALCIPARUM|PFB0445c - symbol:PFB0445c "helicase, ... 1054 1.2e-134 2
UNIPROTKB|Q9TY94 - symbol:UAP56 "DEAD box helicase, UAP56... 1054 1.2e-134 2
UNIPROTKB|H0Y7G4 - symbol:DDX39B "Spliceosome RNA helicas... 1236 7.8e-126 1
UNIPROTKB|K9J6N8 - symbol:DDX39B "Spliceosome RNA helicas... 1185 2.0e-120 1
UNIPROTKB|F8VZL8 - symbol:DDX39B "Spliceosome RNA helicas... 1096 5.3e-111 1
UNIPROTKB|B4DP52 - symbol:DDX39B "Spliceosome RNA helicas... 1086 6.1e-110 1
UNIPROTKB|F6WLT2 - symbol:DDX39B "Spliceosome RNA helicas... 1085 7.8e-110 1
UNIPROTKB|Q8N5M0 - symbol:DDX39A "ATP-dependent RNA helic... 1069 3.9e-108 1
UNIPROTKB|H0Y7X6 - symbol:DDX39B "Spliceosome RNA helicas... 1059 4.4e-107 1
UNIPROTKB|B1Q2N1 - symbol:DDX39 "ATP-dependent RNA helica... 893 1.7e-89 1
UNIPROTKB|F6TRA5 - symbol:DDX39B "Spliceosome RNA helicas... 873 2.3e-87 1
UNIPROTKB|K7EQN7 - symbol:DDX39A "ATP-dependent RNA helic... 864 2.0e-86 1
UNIPROTKB|F6UN21 - symbol:DDX39B "Spliceosome RNA helicas... 862 3.3e-86 1
UNIPROTKB|F6S4E6 - symbol:DDX39B "Spliceosome RNA helicas... 839 9.1e-84 1
UNIPROTKB|H0Y557 - symbol:DDX39B "Spliceosome RNA helicas... 760 2.1e-75 1
UNIPROTKB|E9PP12 - symbol:DDX39B "Spliceosome RNA helicas... 725 1.1e-71 1
UNIPROTKB|F6UJC5 - symbol:DDX39B "Spliceosome RNA helicas... 715 1.3e-70 1
UNIPROTKB|H0Y800 - symbol:DDX39B "Spliceosome RNA helicas... 710 4.3e-70 1
SGD|S000002319 - symbol:DHH1 "Cytoplasmic DExD/H-box heli... 688 9.2e-68 1
UNIPROTKB|K7EPJ3 - symbol:DDX39A "ATP-dependent RNA helic... 681 5.1e-67 1
ASPGD|ASPL0000036135 - symbol:AN10417 species:162425 "Eme... 675 2.2e-66 1
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 674 2.8e-66 1
SGD|S000002428 - symbol:FAL1 "Nucleolar protein required ... 672 4.5e-66 1
TAIR|locus:2050715 - symbol:AT2G45810 species:3702 "Arabi... 670 7.4e-66 1
UNIPROTKB|A4R715 - symbol:DHH1 "ATP-dependent RNA helicas... 669 9.4e-66 1
WB|WBGene00002083 - symbol:inf-1 species:6239 "Caenorhabd... 669 9.4e-66 1
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 668 1.2e-65 1
UNIPROTKB|Q8JFP1 - symbol:EIF4A2 "Eukaryotic initiation f... 668 1.2e-65 1
UNIPROTKB|Q3SZ65 - symbol:EIF4A2 "Eukaryotic initiation f... 668 1.2e-65 1
UNIPROTKB|E2R3J1 - symbol:EIF4A2 "Uncharacterized protein... 668 1.2e-65 1
UNIPROTKB|Q14240 - symbol:EIF4A2 "Eukaryotic initiation f... 668 1.2e-65 1
UNIPROTKB|A6M930 - symbol:EIF4A2 "Eukaryotic translation ... 668 1.2e-65 1
MGI|MGI:106906 - symbol:Eif4a2 "eukaryotic translation in... 668 1.2e-65 1
RGD|1309225 - symbol:Eif4a2 "eukaryotic translation initi... 668 1.2e-65 1
UNIPROTKB|F8WFX2 - symbol:Eif4a2 "Eukaryotic initiation f... 668 1.2e-65 1
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 662 5.2e-65 1
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 662 5.2e-65 1
ZFIN|ZDB-GENE-040426-2802 - symbol:eif4a2 "eukaryotic tra... 662 5.2e-65 1
POMBASE|SPBC776.09 - symbol:ste13 "ATP-dependent RNA heli... 661 6.7e-65 1
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 660 8.5e-65 1
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 660 8.5e-65 1
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 660 8.5e-65 1
TAIR|locus:2098886 - symbol:AT3G61240 species:3702 "Arabi... 660 8.5e-65 1
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 657 1.8e-64 1
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 656 2.3e-64 1
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 656 2.3e-64 1
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 656 2.3e-64 1
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 656 2.3e-64 1
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 656 2.3e-64 1
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 656 2.3e-64 1
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 656 2.3e-64 1
ZFIN|ZDB-GENE-030131-6611 - symbol:wu:fk48d07 "wu:fk48d07... 653 4.7e-64 1
ZFIN|ZDB-GENE-031030-2 - symbol:eif4a1a "eukaryotic trans... 650 9.7e-64 1
FB|FBgn0004419 - symbol:me31B "maternal expression at 31B... 649 1.2e-63 1
UNIPROTKB|H0Y400 - symbol:DDX39B "Spliceosome RNA helicas... 649 1.2e-63 1
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 644 4.2e-63 1
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 644 4.2e-63 1
ZFIN|ZDB-GENE-040120-6 - symbol:eif4a1b "eukaryotic trans... 643 5.4e-63 1
GENEDB_PFALCIPARUM|PFC0915w - symbol:PFC0915w "ATP-depend... 640 1.1e-62 1
DICTYBASE|DDB_G0291804 - symbol:ddx6 "DEAD/DEAH box helic... 638 1.8e-62 1
UNIPROTKB|I3LLD5 - symbol:I3LLD5 "Uncharacterized protein... 638 1.8e-62 1
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat... 636 3.0e-62 1
UNIPROTKB|Q5ZKB9 - symbol:DDX6 "Probable ATP-dependent RN... 635 3.8e-62 1
UNIPROTKB|F8W0J0 - symbol:DDX39B "Spliceosome RNA helicas... 634 4.8e-62 1
UNIPROTKB|E1BDM8 - symbol:DDX6 "Uncharacterized protein" ... 633 6.2e-62 1
UNIPROTKB|E2RR01 - symbol:DDX6 "Uncharacterized protein" ... 633 6.2e-62 1
UNIPROTKB|P26196 - symbol:DDX6 "Probable ATP-dependent RN... 633 6.2e-62 1
UNIPROTKB|F1SAJ5 - symbol:DDX6 "Uncharacterized protein" ... 633 6.2e-62 1
MGI|MGI:104976 - symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box ... 633 6.2e-62 1
RGD|1564560 - symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box hel... 633 6.2e-62 1
ASPGD|ASPL0000014018 - symbol:fal1 species:162425 "Emeric... 631 1.0e-61 1
UNIPROTKB|E1C8R1 - symbol:DDX6 "Probable ATP-dependent RN... 630 1.3e-61 1
CGD|CAL0001638 - symbol:FAL1 species:5476 "Candida albica... 627 2.7e-61 1
UNIPROTKB|P54824 - symbol:ddx6 "ATP-dependent RNA helicas... 626 3.4e-61 1
WARNING: Descriptions of 871 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 1983 (703.1 bits), Expect = 5.4e-205, P = 5.4e-205
Identities = 387/428 (90%), Positives = 400/428 (93%)
Query: 1 MGETRDNXXXXXXXXXXXXXAQ-APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLR 59
MG+ RDN + PDS K NGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1 MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 59
Query: 60 AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 119
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ EP+PGQV+ALV
Sbjct: 60 AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALV 119
Query: 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA 179
LCHTRELAYQIC+EF RFSTYLPD KV+VFYGGVNIKIHKDLLKNECP IVVGTPGR+LA
Sbjct: 120 LCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA 179
Query: 180 LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
LAR+KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
Sbjct: 180 LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
Query: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS 299
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE+EKNRKLNDLLDALDFNQVVIFVKSVS
Sbjct: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVS 299
Query: 300 RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI 359
RAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNI
Sbjct: 300 RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI 359
Query: 360 VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQI
Sbjct: 360 VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQI 419
Query: 420 DTSTYMPS 427
DTSTYMPS
Sbjct: 420 DTSTYMPS 427
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 1096 (390.9 bits), Expect = 6.3e-203, Sum P(2) = 6.3e-203
Identities = 214/250 (85%), Positives = 223/250 (89%)
Query: 1 MGETRDNXXXXXXXXXXXXXAQ-APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLR 59
MG+ RDN + PDS K NGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1 MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 59
Query: 60 AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 119
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ EP+PGQV+ALV
Sbjct: 60 AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALV 119
Query: 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA 179
LCHTRELAYQIC+EF RFSTYLPD KV+VFYGGVNIKIHKDLLKNECP IVVGTPGR+LA
Sbjct: 120 LCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA 179
Query: 180 LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
LAR+KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
Sbjct: 180 LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
Query: 240 CKKFMQDPME 249
CKKFMQD +E
Sbjct: 240 CKKFMQDFLE 249
Score = 890 (318.4 bits), Expect = 6.3e-203, Sum P(2) = 6.3e-203
Identities = 174/181 (96%), Positives = 179/181 (98%)
Query: 247 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 306
PMEIYVDDEAKLTLHGLVQHYIKLSE+EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK
Sbjct: 306 PMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 365
Query: 307 LLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP 366
LLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMP
Sbjct: 366 LLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP 425
Query: 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 426
DSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMP
Sbjct: 426 DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMP 485
Query: 427 S 427
S
Sbjct: 486 S 486
>ZFIN|ZDB-GENE-040426-2902 [details] [associations]
symbol:ddx39ab "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Ab" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-2902 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOVERGEN:HBG107334 KO:K13182 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 OMA:WANCVIS CTD:7919 EMBL:FP101915
EMBL:BC044169 EMBL:BC067555 EMBL:BC128804 EMBL:BX248081
IPI:IPI00631848 RefSeq:NP_998142.1 UniGene:Dr.75872 SMR:Q803W0
STRING:Q803W0 Ensembl:ENSDART00000019957 GeneID:406249
KEGG:dre:406249 InParanoid:Q803W0 NextBio:20817884 Uniprot:Q803W0
Length = 427
Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
Identities = 299/403 (74%), Positives = 346/403 (85%)
Query: 23 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL 82
AP+S A E K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAIL
Sbjct: 22 APESAAPVGKKEV-KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL 80
Query: 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142
GMD++CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P
Sbjct: 81 GMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 140
Query: 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202
+KVAVF+GG++IK +D+LK CP IVVGTPGRILAL R+K L+LKNV+HF+LDECDKM
Sbjct: 141 TVKVAVFFGGMSIKKDEDVLKKSCPHIVVGTPGRILALVRNKTLNLKNVKHFVLDECDKM 200
Query: 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG 262
LE LDMRRDVQ+IF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTLHG
Sbjct: 201 LEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHG 260
Query: 263 LVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322
L Q+Y KL + EKNRKL DLLD L+FNQVVIFVKSV R L++LLVE NFP+I IH GM
Sbjct: 261 LQQYYCKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGM 320
Query: 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRF
Sbjct: 321 AQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 380
Query: 383 GTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
GTKGLAITFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 381 GTKGLAITFVSDETDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>UNIPROTKB|Q13838 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0000346 "transcription export complex"
evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
"ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
Ensembl:ENST00000396172 Ensembl:ENST00000400295
Ensembl:ENST00000400296 Ensembl:ENST00000412106
Ensembl:ENST00000412330 Ensembl:ENST00000413678
Ensembl:ENST00000414440 Ensembl:ENST00000415689
Ensembl:ENST00000416863 Ensembl:ENST00000430784
Ensembl:ENST00000431360 Ensembl:ENST00000441425
Ensembl:ENST00000445218 Ensembl:ENST00000448296
Ensembl:ENST00000453138 Ensembl:ENST00000456476
Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
Length = 428
Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
Identities = 303/409 (74%), Positives = 350/409 (85%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 316
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI 315
Query: 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV
Sbjct: 316 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 375
Query: 377 GRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 376 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
>UNIPROTKB|Q29024 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IEA] [GO:0043008
"ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
Length = 428
Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
Identities = 303/409 (74%), Positives = 350/409 (85%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 316
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI 315
Query: 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV
Sbjct: 316 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 375
Query: 377 GRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 376 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
>UNIPROTKB|Q3T147 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
[GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0000346 "transcription export
complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
Length = 428
Score = 1560 (554.2 bits), Expect = 3.6e-160, P = 3.6e-160
Identities = 303/409 (74%), Positives = 349/409 (85%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P +KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 316
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI 315
Query: 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV
Sbjct: 316 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 375
Query: 377 GRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 376 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
>UNIPROTKB|F1SCH3 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:WANCVIS EMBL:FP103015
Ensembl:ENSSSCT00000015052 Uniprot:F1SCH3
Length = 475
Score = 1560 (554.2 bits), Expect = 3.6e-160, P = 3.6e-160
Identities = 297/404 (73%), Positives = 345/404 (85%)
Query: 22 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81
QAP A + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAI
Sbjct: 68 QAPPENAPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI 127
Query: 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 141
LGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y+
Sbjct: 128 LGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYM 187
Query: 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201
P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ L+LKNV+HF+LDECDK
Sbjct: 188 PSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 247
Query: 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 261
MLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTLH
Sbjct: 248 MLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLH 307
Query: 262 GLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
GL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH G
Sbjct: 308 GLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRG 367
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
M+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGR
Sbjct: 368 MAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 427
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
FGTKGLAITFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 428 FGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 471
>UNIPROTKB|Q5WR10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
"intronless viral mRNA export from host nucleus" evidence=IEA]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA]
[GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=IEA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
Length = 428
Score = 1559 (553.9 bits), Expect = 4.6e-160, P = 4.6e-160
Identities = 303/409 (74%), Positives = 349/409 (85%)
Query: 25 DSVATKANGEA----AKK----GYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ AKK YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 316
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI 315
Query: 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV
Sbjct: 316 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 375
Query: 377 GRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 376 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
>UNIPROTKB|E2QY95 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:10212
KO:K13182 GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:AAEX03012368 RefSeq:XP_533895.2 Ensembl:ENSCAFT00000025943
GeneID:476689 KEGG:cfa:476689 NextBio:20852303 Uniprot:E2QY95
Length = 427
Score = 1558 (553.5 bits), Expect = 5.9e-160, P = 5.9e-160
Identities = 299/405 (73%), Positives = 348/405 (85%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 20 QAPPE-STPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 78
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y
Sbjct: 79 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKY 138
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ L+LKNV+HF+LDECD
Sbjct: 139 MPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECD 198
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
KMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTL
Sbjct: 199 KMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTL 258
Query: 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS 320
HGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH
Sbjct: 259 HGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHR 318
Query: 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380
GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAG
Sbjct: 319 GMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 378
Query: 381 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RFGTKGLAITFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 379 RFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>UNIPROTKB|Q5E970 [details] [associations]
symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
isoform 1" species:9913 "Bos taurus" [GO:0006406 "mRNA export from
nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334
KO:K13182 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
OMA:WANCVIS EMBL:DAAA02019335 EMBL:BT021050 IPI:IPI00700228
RefSeq:NP_001029924.1 UniGene:Bt.29896 SMR:Q5E970 STRING:Q5E970
Ensembl:ENSBTAT00000029088 GeneID:614215 KEGG:bta:614215
InParanoid:Q5E970 NextBio:20899000 Uniprot:Q5E970
Length = 427
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 294/404 (72%), Positives = 345/404 (85%)
Query: 22 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81
QAP A + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAI
Sbjct: 20 QAPPESAPPPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI 79
Query: 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 141
LGMD++CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y+
Sbjct: 80 LGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYM 139
Query: 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201
P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ L+L+NV+HF+LDECDK
Sbjct: 140 PSVKVSVFFGGLSIKKDEEVLKRNCPHVVVGTPGRILALVRNRSLNLRNVKHFVLDECDK 199
Query: 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 261
MLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTLH
Sbjct: 200 MLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLH 259
Query: 262 GLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
GL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH G
Sbjct: 260 GLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRG 319
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
M+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGR
Sbjct: 320 MAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 379
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
FGTKGLA+TFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 380 FGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>MGI|MGI:99240 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISO] [GO:0000346 "transcription export complex"
evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
Length = 428
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 299/398 (75%), Positives = 346/398 (86%)
Query: 29 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVI 87
T+A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+
Sbjct: 27 TEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 86
Query: 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147
CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVA
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207
VF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LD
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY 267
MRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 268 IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 327
+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387
L+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGRFGTKGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 388 AITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
AITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
>RGD|70923 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
[GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
GermOnline:ENSRNOG00000000841 Uniprot:Q63413
Length = 428
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 299/398 (75%), Positives = 346/398 (86%)
Query: 29 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVI 87
T+A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+
Sbjct: 27 TEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 86
Query: 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147
CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVA
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207
VF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LD
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY 267
MRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 268 IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 327
+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387
L+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGRFGTKGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 388 AITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
AITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
>MGI|MGI:1915528 [details] [associations]
symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
CleanEx:MM_DDX39 Genevestigator:Q8VDW0
GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
Length = 427
Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
Identities = 297/405 (73%), Positives = 347/405 (85%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 20 QAPQE-STPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 78
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y
Sbjct: 79 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKY 138
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +KV+VF+GG++IK +D+LK CP +VVGTPGRILAL R + L+L+NV+HF+LDECD
Sbjct: 139 MPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECD 198
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
KMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTL
Sbjct: 199 KMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTL 258
Query: 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS 320
HGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH
Sbjct: 259 HGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHR 318
Query: 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380
GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAG
Sbjct: 319 GMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 378
Query: 381 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RFGTKGLA+TFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 379 RFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>UNIPROTKB|O00148 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006406 "mRNA export from
nucleus" evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U90426 EMBL:AK026614 EMBL:BC001009
IPI:IPI00940237 RefSeq:NP_005795.2 UniGene:Hs.311609
ProteinModelPortal:O00148 SMR:O00148 IntAct:O00148
MINT:MINT-1035991 STRING:O00148 PhosphoSite:O00148 PaxDb:O00148
PeptideAtlas:O00148 PRIDE:O00148 DNASU:10212
Ensembl:ENST00000242776 GeneID:10212 KEGG:hsa:10212 UCSC:uc002myo.3
CTD:10212 GeneCards:GC19M014521 HGNC:HGNC:17821 neXtProt:NX_O00148
PharmGKB:PA27226 HOVERGEN:HBG107334 InParanoid:O00148 KO:K13182
OrthoDB:EOG4XSKPX PhylomeDB:O00148 ChiTaRS:DDX39A GenomeRNAi:10212
NextBio:38664 ArrayExpress:O00148 Bgee:O00148 CleanEx:HS_DDX39
Genevestigator:O00148 GermOnline:ENSG00000123136 Uniprot:O00148
Length = 427
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 297/405 (73%), Positives = 347/405 (85%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 20 QAPQE-STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 78
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y
Sbjct: 79 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKY 138
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ SLKNV+HF+LDECD
Sbjct: 139 MPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECD 198
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
KMLE LDMRRDVQEIF++TPH+KQ MMFSATLSK+IRPVC+KFMQDPME++VDDE KLTL
Sbjct: 199 KMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTL 258
Query: 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS 320
HGL Q+Y+KL + EKNRKL DLLD L+FNQV+IFVKSV R L +LLVE NFP+I IH
Sbjct: 259 HGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHR 318
Query: 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380
GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAG
Sbjct: 319 GMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 378
Query: 381 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RFGTKGLAITFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 379 RFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>RGD|619920 [details] [associations]
symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
Length = 427
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 296/405 (73%), Positives = 346/405 (85%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
Q P +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 20 QVPQE-STPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 78
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y
Sbjct: 79 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKY 138
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +KV+VF+GG++IK +D+LK CP +VVGTPGRILAL R + L+L+NV+HF+LDECD
Sbjct: 139 MPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECD 198
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
KMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTL
Sbjct: 199 KMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTL 258
Query: 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS 320
HGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH
Sbjct: 259 HGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHR 318
Query: 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380
GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAG
Sbjct: 319 GMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 378
Query: 381 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
RFGTKGLA+TFVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 379 RFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>UNIPROTKB|Q5ZHZ0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
Uniprot:Q5ZHZ0
Length = 428
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 295/389 (75%), Positives = 339/389 (87%)
Query: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGK
Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGK 95
Query: 97 TAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 156
TAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P +KVAVF+GG+ +K
Sbjct: 96 TAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVK 155
Query: 157 IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216
+++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF
Sbjct: 156 KDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 215
Query: 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 276
+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKN
Sbjct: 216 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN 275
Query: 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE 336
RKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+
Sbjct: 276 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 335
Query: 337 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396
+RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS +
Sbjct: 336 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
Query: 397 DSDILNQVQARFEVDIKELPEQIDTSTYM 425
D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 396 DAKILNDVQDRFEVNISELPDEIDISSYI 424
>ZFIN|ZDB-GENE-030131-4275 [details] [associations]
symbol:ddx39aa "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Aa" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-4275 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BC071505
IPI:IPI00510085 UniGene:Dr.1111 ProteinModelPortal:Q6IQA5
SMR:Q6IQA5 STRING:Q6IQA5 PRIDE:Q6IQA5 InParanoid:Q6IQA5
ArrayExpress:Q6IQA5 Bgee:Q6IQA5 Uniprot:Q6IQA5
Length = 427
Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
Identities = 294/401 (73%), Positives = 343/401 (85%)
Query: 25 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGM 84
DS AT E K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGM
Sbjct: 24 DSGATTGKKEV-KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM 82
Query: 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144
D++CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+ +
Sbjct: 83 DILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMSSV 142
Query: 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204
K A F+GG++IK +D+LK CP IVVGTPGRILAL+R+K L+LKNV+HF+LDECDKMLE
Sbjct: 143 KCAAFFGGMSIKKDEDVLKKNCPHIVVGTPGRILALSRNKTLTLKNVKHFVLDECDKMLE 202
Query: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
LDMRRDVQ+IF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTLHGL
Sbjct: 203 QLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQ 262
Query: 265 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L++LLVE NFP+I IH GM+Q
Sbjct: 263 QYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMTQ 322
Query: 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384
EERL+RY+ FK+ +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGT
Sbjct: 323 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 382
Query: 385 KGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
KGLA+ FVS +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct: 383 KGLAVIFVSDETDAKILNDVQDRFEVNVAELPEEIDISTYI 423
>POMBASE|SPAC17G6.14c [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase Uap56"
species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
export complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
"RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
Length = 434
Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
Identities = 294/401 (73%), Positives = 342/401 (85%)
Query: 29 TKANGEAA-KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
T NGE + KKG YVGIHS+GFRDFLLKPELLRAI DSGFEHPSEVQ CIPQ+ILG DV
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146
+CQAKSGMGKTAVFVLSTLQQ EP G+V+ LVLCHTRELA+QI +E+ RFS YLPD++
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 147 AVFYGGVNIKIHKDLLKNEC--PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204
AVFYGG+NIK + K++ P IVV TPGR+ AL R+K L + +V+HF+LDECDK+LE
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
Query: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
S+DMRRD+QE+F+ TP KQVMMFSATLS EIRP+CKKFMQ+P+EIYVDDE KLTLHGL
Sbjct: 212 SVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQ 271
Query: 265 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
QHY+KL E KNRK+NDLLD+L+FNQVVIFVKSVSRA EL++LL ECNFPSICIH G+ Q
Sbjct: 272 QHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQ 331
Query: 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384
EER+ RYK FK+ +KRI VATD+ GRGIDIERVNIVINYDMPDS D+YLHRVGRAGRFGT
Sbjct: 332 EERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGT 391
Query: 385 KGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
KGLAITF SS DS IL+++Q RFEV+I ELP++ID +YM
Sbjct: 392 KGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432
>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
Length = 435
Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
Identities = 292/392 (74%), Positives = 338/392 (86%)
Query: 34 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSG 93
E K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSG
Sbjct: 40 EGVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 99
Query: 94 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 153
MGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P +KVAVF+GG+
Sbjct: 100 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGL 159
Query: 154 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQ 213
+IK +++LK E P +VVGTPGRILAL+R+K L+L++++HFILDECDKMLE LDMRRDVQ
Sbjct: 160 SIKKDEEVLKKESPHVVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQ 219
Query: 214 EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL 273
EIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL +
Sbjct: 220 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN 279
Query: 274 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKG 333
EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH M Q+ERL RY+
Sbjct: 280 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQ 339
Query: 334 FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS
Sbjct: 340 FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 399
Query: 394 SASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
+D+ LN VQ RFEV+I ELPE+ID S+Y+
Sbjct: 400 DENDARTLNDVQDRFEVNISELPEEIDISSYI 431
>UNIPROTKB|F8VQ10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:NAENPAI EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI01025218 SMR:F8VQ10
Ensembl:ENST00000417556 Ensembl:ENST00000547039
Ensembl:ENST00000547489 Ensembl:ENST00000548340
Ensembl:ENST00000548614 Ensembl:ENST00000550217
Ensembl:ENST00000552288 Uniprot:F8VQ10
Length = 443
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 296/404 (73%), Positives = 341/404 (84%)
Query: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGK
Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGK 95
Query: 97 TAVFVLSTLQQTEPNPGQV---------------TALVLCHTRELAYQICHEFERFSTYL 141
TAVFVL+TLQQ EP GQV + LV+CHTRELA+QI E+ERFS Y+
Sbjct: 96 TAVFVLATLQQLEPVTGQVYLGRVLGRGFWCVFVSVLVMCHTRELAFQISKEYERFSKYM 155
Query: 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201
P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDK
Sbjct: 156 PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 215
Query: 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 261
MLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLH
Sbjct: 216 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLH 275
Query: 262 GLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
GL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH G
Sbjct: 276 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 335
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
M QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGR
Sbjct: 336 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 395
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
FGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 396 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 439
>FB|FBgn0014189 [details] [associations]
symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
Length = 424
Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
Identities = 291/399 (72%), Positives = 337/399 (84%)
Query: 32 NGEAAKKG----YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVI 87
N EA KK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++
Sbjct: 23 NQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 82
Query: 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVT-ALVLCHTRELAYQICHEFERFSTYLPDIKV 146
CQAKSGMGKTAVFVL+TLQQ EP+ LV+CHTRELA+QI E+ERFS Y+P +KV
Sbjct: 83 CQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKV 142
Query: 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206
AVF+GG+ I+ ++ LK+ P IVVGTPGRILAL R+K L+LK ++HF+LDECDKMLE L
Sbjct: 143 AVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQL 202
Query: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
DMRRDVQEIF+ TPH KQVMMFSATLSK+IRPVCKKFMQDPME+YVDDEAKLTLHGL QH
Sbjct: 203 DMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQH 262
Query: 267 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 326
Y+ L E EKN+KL +LLD L+FNQVVIFVKSV R L++LL E NFP+I IH GM+QEE
Sbjct: 263 YVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEE 322
Query: 327 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386
RL RY+ FK+ KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKG
Sbjct: 323 RLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 382
Query: 387 LAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
LAITFVS +D+ ILN+VQ RF+V+I ELPE+ID STY+
Sbjct: 383 LAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYI 421
>WB|WBGene00001840 [details] [associations]
symbol:hel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
Uniprot:Q18212
Length = 425
Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
Identities = 284/395 (71%), Positives = 330/395 (83%)
Query: 33 GEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
G+A K KG Y IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQA
Sbjct: 26 GDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQA 85
Query: 91 KSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 150
KSGMGKTAVFV++TLQQ EP G+V+ + +CHTRELA+QI E+ERFS YLP +KVAVF+
Sbjct: 86 KSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFF 145
Query: 151 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210
GG+ IK ++ L N+CP IVVGTPGR+LALAR L L V++F+LDECDKM+ DMRR
Sbjct: 146 GGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRR 205
Query: 211 DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 270
DVQEI KMTP KQVMMFSATL KE+R VCK+FMQDPME+YVDDEAKLTLHGL QHY+KL
Sbjct: 206 DVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL 265
Query: 271 SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTR 330
E EKNR+L +LLDAL+FNQVVIFVK+V R L++LL E NFPSI IH M+QEERL+R
Sbjct: 266 KEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSR 325
Query: 331 YKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
Y+ FK+ KRILVATDL GRG+DIERVNIV NYDMP+ +D+YLHRV RAGRFGTKGLAIT
Sbjct: 326 YQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAIT 385
Query: 391 FVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
FVS +D+ LN VQ RF++ I ELPE+ID STY+
Sbjct: 386 FVSDENDAKTLNSVQDRFDISITELPEKIDVSTYI 420
>UNIPROTKB|A4RBS3 [details] [associations]
symbol:SUB2 "ATP-dependent RNA helicase SUB2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
Length = 436
Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
Identities = 281/415 (67%), Positives = 331/415 (79%)
Query: 21 AQAPDSVATK----ANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHE 75
A A DS K A G KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ
Sbjct: 22 APAADSNGKKGELAAGGNVDKKGSYVGIHSTGFRDFLLKPELLRAIGDCGFEHPSEVQQT 81
Query: 76 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135
CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ EP G+ + LV+CHTRELA+QI +E+
Sbjct: 82 CIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYN 141
Query: 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRH 193
RFS Y+PDIK VF+GG I+ +LLKN+ P I+VGTPGR+ AL RDK L L +VR
Sbjct: 142 RFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIVGTPGRLNALVRDKFLRLSSVRI 201
Query: 194 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253
F+LDECDKML+ +DMRRDVQEIF+ TP KQVMMFSATLS EI+P+CKKFMQ+P E YVD
Sbjct: 202 FVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICKKFMQNPTEHYVD 261
Query: 254 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF 313
++ KLTLHGL Q+++ L E EKNRKLN+LLD L FNQV+IFVKS RA EL+KLL ECNF
Sbjct: 262 EDTKLTLHGLQQYFVALEEKEKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNF 321
Query: 314 PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
PSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYDMP AD+YL
Sbjct: 322 PSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYL 381
Query: 374 HRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYMPS 427
HRVGRAGRFGTKGLA++FV++ D ++L ++ RFEV I E P+ ID STYM S
Sbjct: 382 HRVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYMAS 436
>UNIPROTKB|Q5STU3 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 EMBL:CR942185 IPI:IPI00790636
SMR:Q5STU3 STRING:Q5STU3 Ensembl:ENST00000376177
Ensembl:ENST00000400293 Ensembl:ENST00000430703
Ensembl:ENST00000438578 Ensembl:ENST00000446341
Ensembl:ENST00000450987 Ensembl:ENST00000453488 Uniprot:Q5STU3
Length = 425
Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
Identities = 268/359 (74%), Positives = 308/359 (85%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 316
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI 315
Query: 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHR
Sbjct: 316 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 374
>SGD|S000002242 [details] [associations]
symbol:SUB2 "Component of the TREX complex required for
nuclear mRNA export" species:4932 "Saccharomyces cerevisiae"
[GO:0006406 "mRNA export from nucleus" evidence=IMP;IDA;IPI]
[GO:0000346 "transcription export complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA;TAS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IGI;ISA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IPI] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002242 GO:GO:0005524
EMBL:BK006938 GO:GO:0005681 GO:GO:0003723 GO:GO:0006348
GO:GO:0006368 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000781 GO:GO:0004004
GO:GO:0006283 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0031124
GeneTree:ENSGT00660000095549 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:Z74132 EMBL:AY692907 PIR:S67620
RefSeq:NP_010199.1 ProteinModelPortal:Q07478 SMR:Q07478
DIP:DIP-5343N IntAct:Q07478 MINT:MINT-526164 STRING:Q07478
PaxDb:Q07478 PeptideAtlas:Q07478 EnsemblFungi:YDL084W GeneID:851475
KEGG:sce:YDL084W CYGD:YDL084w OMA:NNPLINC NextBio:968777
Genevestigator:Q07478 GermOnline:YDL084W Uniprot:Q07478
Length = 446
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 267/400 (66%), Positives = 324/400 (81%)
Query: 32 NGEAA--KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVIC 88
N AA KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+C
Sbjct: 45 NNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLC 104
Query: 89 QAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 148
QAKSG+GKTAVFVLSTLQQ +P PG+V +V+C+ RELAYQI +E+ RFS Y+PD+K AV
Sbjct: 105 QAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAV 164
Query: 149 FYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206
FYGG I +LLKN+ P IVV TPGR+ AL R+K + L +V++F++DECDK+LE L
Sbjct: 165 FYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEEL 224
Query: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
DMRRDVQEIF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+
Sbjct: 225 DMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQY 284
Query: 267 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 326
YIKL E EKNRKL LLD L+FNQV+IFVKS +RA EL KLL NFP+I +H M QEE
Sbjct: 285 YIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEE 344
Query: 327 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386
R+ RYK FK+ KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKG
Sbjct: 345 RIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKG 404
Query: 387 LAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 425
LAI+FVSS D ++L ++Q RF+V I E PE+ ID STY+
Sbjct: 405 LAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
Identities = 262/386 (67%), Positives = 318/386 (82%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
+V +HSSGFR+FLLKPEL R I D GFEHPSEVQ+ECIPQAILG DVICQAKSGMGKTAV
Sbjct: 42 HVAMHSSGFREFLLKPELERVIGDCGFEHPSEVQNECIPQAILGTDVICQAKSGMGKTAV 101
Query: 100 FVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159
FVLSTLQQ + NP +T LVLC+TRELAYQIC EF+RF+ YLP++K AV YGG+ ++ HK
Sbjct: 102 FVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHK 161
Query: 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219
DL+K + P I++GTPGRIL LA + LSLK ++ FILDECD MLESLDMR+DVQ+IFK+
Sbjct: 162 DLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLI 221
Query: 220 PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL 279
P +KQVMMFSATLS IRP+CKKFM +P+EIY++D +KLTLHGL Q+Y+ ++E +KN+KL
Sbjct: 222 PANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKL 281
Query: 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 339
+LLD+LDFNQ VIFVKSV RA LNK+L + FPSICIH + Q++R+ +Y+ FK
Sbjct: 282 IELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFES 341
Query: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 399
RI+VAT++ GRGIDIERVN+VINYDM +SADTYLHRVGRAGRFGTKGLAI+FV S D
Sbjct: 342 RIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSKEDP- 400
Query: 400 ILNQVQARFEVDIKELPEQIDTSTYM 425
+L QVQ++F V IKEL D STYM
Sbjct: 401 VLEQVQSKFVVSIKELVATPDPSTYM 426
>GENEDB_PFALCIPARUM|PFB0445c [details] [associations]
symbol:PFB0445c "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 1054 (376.1 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 201/312 (64%), Positives = 250/312 (80%)
Query: 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE-CPQIVVGT 173
V L L HTRELAYQI +EF+RFS YL +++ V YGG+++ H L K + P I++GT
Sbjct: 144 VRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGT 203
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGRILAL R+K L ++HF+LDECDK LE LDMR DVQ+IF TP KQVM FSAT++
Sbjct: 204 PGRILALIREKYLITDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMA 263
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVI 293
KE+R VCKKF+Q+P+EI++DDEAKL LHGL+QHY+KL E +K RKL ++LDAL+FNQV+I
Sbjct: 264 KEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVII 323
Query: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353
FVKSV+RA L+KLL ECNFPSI IH G+ Q+ER+ RY FK+ RILV+TDL GRGID
Sbjct: 324 FVKSVTRAITLDKLLTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGRGID 383
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 413
IERVNIVINYDMP+++D+YLHRVGRAGRFGTKGLA+TFVSS D+ LN+VQ RFEV I
Sbjct: 384 IERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAIS 443
Query: 414 ELPEQIDTSTYM 425
E+P +ID + Y+
Sbjct: 444 EMPNKIDCNEYI 455
Score = 286 (105.7 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 55/82 (67%), Positives = 63/82 (76%)
Query: 33 GEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKS 92
G A + Y +H+ GF+DF LKPELLRAI +SGFEHPSEVQ E IP AI G D++CQAKS
Sbjct: 42 GGAMRGSYATVHTGGFKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKS 101
Query: 93 GMGKTAVFVLSTLQQTEPNPGQ 114
GMGKTAVFVLS LQQ + N Q
Sbjct: 102 GMGKTAVFVLSILQQLDTNENQ 123
>UNIPROTKB|Q9TY94 [details] [associations]
symbol:UAP56 "DEAD box helicase, UAP56" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 1054 (376.1 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 201/312 (64%), Positives = 250/312 (80%)
Query: 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE-CPQIVVGT 173
V L L HTRELAYQI +EF+RFS YL +++ V YGG+++ H L K + P I++GT
Sbjct: 144 VRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGT 203
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGRILAL R+K L ++HF+LDECDK LE LDMR DVQ+IF TP KQVM FSAT++
Sbjct: 204 PGRILALIREKYLITDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMA 263
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVI 293
KE+R VCKKF+Q+P+EI++DDEAKL LHGL+QHY+KL E +K RKL ++LDAL+FNQV+I
Sbjct: 264 KEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVII 323
Query: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353
FVKSV+RA L+KLL ECNFPSI IH G+ Q+ER+ RY FK+ RILV+TDL GRGID
Sbjct: 324 FVKSVTRAITLDKLLTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGRGID 383
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 413
IERVNIVINYDMP+++D+YLHRVGRAGRFGTKGLA+TFVSS D+ LN+VQ RFEV I
Sbjct: 384 IERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAIS 443
Query: 414 ELPEQIDTSTYM 425
E+P +ID + Y+
Sbjct: 444 EMPNKIDCNEYI 455
Score = 286 (105.7 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 55/82 (67%), Positives = 63/82 (76%)
Query: 33 GEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKS 92
G A + Y +H+ GF+DF LKPELLRAI +SGFEHPSEVQ E IP AI G D++CQAKS
Sbjct: 42 GGAMRGSYATVHTGGFKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKS 101
Query: 93 GMGKTAVFVLSTLQQTEPNPGQ 114
GMGKTAVFVLS LQQ + N Q
Sbjct: 102 GMGKTAVFVLSILQQLDTNENQ 123
>UNIPROTKB|H0Y7G4 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
Ensembl:ENST00000420337 Ensembl:ENST00000426766
Ensembl:ENST00000448800 Uniprot:H0Y7G4
Length = 328
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 235/323 (72%), Positives = 279/323 (86%)
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DL
Sbjct: 122 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 181
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
LD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RIL
Sbjct: 182 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 241
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
VAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS +D+ ILN
Sbjct: 242 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 301
Query: 403 QVQARFEVDIKELPEQIDTSTYM 425
VQ RFEV+I ELP++ID S+Y+
Sbjct: 302 DVQDRFEVNISELPDEIDISSYI 324
>UNIPROTKB|K9J6N8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00660000095549 EMBL:AAEX03008212
Ensembl:ENSCAFT00000000797 Uniprot:K9J6N8
Length = 310
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 224/306 (73%), Positives = 266/306 (86%)
Query: 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA 179
+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILA
Sbjct: 1 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA 60
Query: 180 LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
LAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPV
Sbjct: 61 LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 120
Query: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS 299
C+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV
Sbjct: 121 CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 180
Query: 300 RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI 359
R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI
Sbjct: 181 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 240
Query: 360 VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++I
Sbjct: 241 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 300
Query: 420 DTSTYM 425
D S+Y+
Sbjct: 301 DISSYI 306
>UNIPROTKB|F8VZL8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:CR753892 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:BX001040
EMBL:BX248516 EMBL:BX927320 EMBL:CR753820 EMBL:CR753864
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI00643815
SMR:F8VZL8 Ensembl:ENST00000546633 Ensembl:ENST00000546637
Ensembl:ENST00000548331 Ensembl:ENST00000549374
Ensembl:ENST00000550435 Ensembl:ENST00000551031 Uniprot:F8VZL8
Length = 323
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 214/289 (74%), Positives = 246/289 (85%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 305
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQ + KSV R + N
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQEIT-CKSVQRFSTTN 303
>UNIPROTKB|B4DP52 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471081
GO:GO:0003676 EMBL:AL662847 EMBL:AL662801 EMBL:CR753892
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
EMBL:AK298194 IPI:IPI00792043 SMR:B4DP52 STRING:B4DP52
Ensembl:ENST00000415382 Ensembl:ENST00000548499
Ensembl:ENST00000548770 Ensembl:ENST00000549326
Ensembl:ENST00000549433 Ensembl:ENST00000551056
Ensembl:ENST00000552079 UCSC:uc011dnn.2 Uniprot:B4DP52
Length = 350
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 208/281 (74%), Positives = 244/281 (86%)
Query: 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204
KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct: 66 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 125
Query: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL
Sbjct: 126 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 185
Query: 265 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM Q
Sbjct: 186 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
Query: 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384
EERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP+ +DTYLHRV RAGRFGT
Sbjct: 246 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 305
Query: 385 KGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
KGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 306 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 346
>UNIPROTKB|F6WLT2 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00643815 SMR:F6WLT2 Ensembl:ENST00000414088
Ensembl:ENST00000417558 Ensembl:ENST00000427214
Ensembl:ENST00000435182 Ensembl:ENST00000438449
Ensembl:ENST00000439927 Ensembl:ENST00000455916 Uniprot:F6WLT2
Length = 289
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 209/274 (76%), Positives = 239/274 (87%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 255
Query: 257 KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQ 290
KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQ
Sbjct: 256 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ 289
>UNIPROTKB|Q8N5M0 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:CH471106
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
UniGene:Hs.311609 HGNC:HGNC:17821 ChiTaRS:DDX39A EMBL:AC008569
HOVERGEN:HBG072062 EMBL:BC032128 IPI:IPI00166874 SMR:Q8N5M0
IntAct:Q8N5M0 STRING:Q8N5M0 Ensembl:ENST00000324340 Uniprot:Q8N5M0
Length = 322
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 203/272 (74%), Positives = 235/272 (86%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 20 QAPQE-STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 78
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y
Sbjct: 79 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKY 138
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ SLKNV+HF+LDECD
Sbjct: 139 MPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECD 198
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
KMLE LDMRRDVQEIF++TPH+KQ MMFSATLSK+IRPVC+KFMQDPME++VDDE KLTL
Sbjct: 199 KMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTL 258
Query: 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVV 292
HGL Q+Y+KL + EKNRKL DLLD L+FNQ V
Sbjct: 259 HGLQQYYVKLKDSEKNRKLFDLLDVLEFNQPV 290
>UNIPROTKB|H0Y7X6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
ProteinModelPortal:H0Y7X6 PRIDE:H0Y7X6 Ensembl:ENST00000437943
Bgee:H0Y7X6 Uniprot:H0Y7X6
Length = 325
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 200/273 (73%), Positives = 237/273 (86%)
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DL
Sbjct: 122 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 181
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
LD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RIL
Sbjct: 182 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 241
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
VAT+L GRG+DIERVNI NYDMP+ +DTYLHR
Sbjct: 242 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 274
>UNIPROTKB|B1Q2N1 [details] [associations]
symbol:DDX39 "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 UniGene:Hs.311609
HGNC:HGNC:17821 EMBL:AC008569 EMBL:AB254849 IPI:IPI00062206
SMR:B1Q2N1 STRING:B1Q2N1 Ensembl:ENST00000454233
Ensembl:ENST00000588692 UCSC:uc010dzm.1 HOVERGEN:HBG072062
Uniprot:B1Q2N1
Length = 267
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 170/226 (75%), Positives = 196/226 (86%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 20 QAPQE-STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 78
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y
Sbjct: 79 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKY 138
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ SLKNV+HF+LDECD
Sbjct: 139 MPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECD 198
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 246
KMLE LDMRRDVQEIF++TPH+KQ MMFSATLSK+IRPVC+KFMQD
Sbjct: 199 KMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 244
>UNIPROTKB|F6TRA5 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00796920 SMR:F6TRA5 Ensembl:ENST00000428098
Ensembl:ENST00000438301 Ensembl:ENST00000438433
Ensembl:ENST00000444726 Ensembl:ENST00000446272
Ensembl:ENST00000449100 Ensembl:ENST00000455645 Uniprot:F6TRA5
Length = 238
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 170/223 (76%), Positives = 194/223 (86%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPV
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 238
>UNIPROTKB|K7EQN7 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821 EMBL:AC008569
Ensembl:ENST00000589675 Uniprot:K7EQN7
Length = 255
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 170/237 (71%), Positives = 196/237 (82%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE--------- 71
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSE
Sbjct: 20 QAPQE-STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEGSRPSRSAS 78
Query: 72 --VQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129
VQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+Q
Sbjct: 79 PAVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQ 138
Query: 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLK 189
I E+ERFS Y+P +KV+VF+GG++IK +++LK CP +VVGTPGRILAL R++ SLK
Sbjct: 139 ISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLK 198
Query: 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 246
NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSK+IRPVC+KFMQD
Sbjct: 199 NVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 255
>UNIPROTKB|F6UN21 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00642800 SMR:F6UN21 Ensembl:ENST00000416969
Ensembl:ENST00000419338 Ensembl:ENST00000420958
Ensembl:ENST00000436919 Ensembl:ENST00000436995
Ensembl:ENST00000446909 Ensembl:ENST00000449863 Uniprot:F6UN21
Length = 236
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 168/221 (76%), Positives = 192/221 (86%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIR
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 236
>UNIPROTKB|F6S4E6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00641634 SMR:F6S4E6 Ensembl:ENST00000415027
Ensembl:ENST00000432189 Ensembl:ENST00000444267
Ensembl:ENST00000444480 Ensembl:ENST00000451051
Ensembl:ENST00000452908 Ensembl:ENST00000456662 Uniprot:F6S4E6
Length = 231
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 163/216 (75%), Positives = 187/216 (86%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 16 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 75
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 76 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 135
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196
FS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFIL
Sbjct: 136 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 195
Query: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232
DECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATL
Sbjct: 196 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231
>UNIPROTKB|H0Y557 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y557 PRIDE:H0Y557
Ensembl:ENST00000416325 Bgee:H0Y557 Uniprot:H0Y557
Length = 189
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 141/188 (75%), Positives = 168/188 (89%)
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DL
Sbjct: 122 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 181
Query: 283 LDALDFNQ 290
LD L+FNQ
Sbjct: 182 LDVLEFNQ 189
>UNIPROTKB|E9PP12 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003676 EMBL:AL662847 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917 ChiTaRS:DDX39B
IPI:IPI00792043 ProteinModelPortal:E9PP12 SMR:E9PP12
Ensembl:ENST00000467694 ArrayExpress:E9PP12 Bgee:E9PP12
Uniprot:E9PP12
Length = 247
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 139/182 (76%), Positives = 160/182 (87%)
Query: 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204
KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct: 66 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 125
Query: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL
Sbjct: 126 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 185
Query: 265 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM Q
Sbjct: 186 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
Query: 325 EE 326
EE
Sbjct: 246 EE 247
>UNIPROTKB|F6UJC5 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003676 EMBL:AL662847 EMBL:AL662801 EMBL:CR753892
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00985355 SMR:F6UJC5 Ensembl:ENST00000415390
Ensembl:ENST00000427425 Ensembl:ENST00000427489
Ensembl:ENST00000431908 Ensembl:ENST00000446328
Ensembl:ENST00000448000 Ensembl:ENST00000452792 Uniprot:F6UJC5
Length = 245
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 137/180 (76%), Positives = 158/180 (87%)
Query: 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204
KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct: 66 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 125
Query: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL
Sbjct: 126 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 185
Query: 265 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM Q
Sbjct: 186 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
>UNIPROTKB|H0Y800 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
ProteinModelPortal:H0Y800 SMR:H0Y800 PRIDE:H0Y800
Ensembl:ENST00000432549 Bgee:H0Y800 Uniprot:H0Y800
Length = 179
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 136/179 (75%), Positives = 157/179 (87%)
Query: 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205
VAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct: 1 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 60
Query: 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 265
LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q
Sbjct: 61 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQ 120
Query: 266 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM Q
Sbjct: 121 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 179
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 153/379 (40%), Positives = 220/379 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF LK ELL I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++
Sbjct: 48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 107
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+P ++ AL++ TRELA Q + I V GG N++ D+L+ NE
Sbjct: 108 VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNET 164
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I+VGTPGR+L LA K L + FI+DE DKML S D + +++I P Q +
Sbjct: 165 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML-SRDFKTIIEQILSFLPPTHQSL 223
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ K + P EI + +E LTL G+ Q+Y + E +K LN L L
Sbjct: 224 LFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKL 281
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S +R L K + + + H+ M Q+ER + F++G R LV +D
Sbjct: 282 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 341
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI ++ +D L +++
Sbjct: 342 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINW-NDRFNLYKIEQ 400
Query: 407 RFEVDIKELPEQIDTSTYM 425
+I +P ID S Y+
Sbjct: 401 ELGTEIAAIPATIDKSLYV 419
>UNIPROTKB|K7EPJ3 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821 EMBL:AC008569
Ensembl:ENST00000590315 Uniprot:K7EPJ3
Length = 189
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 138/195 (70%), Positives = 155/195 (79%)
Query: 22 QAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA 80
QAP +T A + KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQA
Sbjct: 8 QAPQE-STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 66
Query: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140
ILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERFS Y
Sbjct: 67 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKY 126
Query: 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200
+P +K +++LK CP +VVGTPGRILAL R++ SLKNV+HF+LDECD
Sbjct: 127 MPSVK------------DEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECD 174
Query: 201 KMLESLDMRRDVQEI 215
KMLE LDMRRDVQEI
Sbjct: 175 KMLEQLDMRRDVQEI 189
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 149/379 (39%), Positives = 220/379 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF +K EL+ I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++
Sbjct: 41 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 100
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
P + AL+L TRELA Q H + +L I V V GG + D+++ N+
Sbjct: 101 INPKSTKTQALILVPTRELALQTSHVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDA 157
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I+VGTPGR+L LA L F++DE DK+L S + ++++ P D+QVM
Sbjct: 158 VHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVM 216
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ + M++P EI + DE LTL G+ Q+Y + E +K LN L L
Sbjct: 217 LFSATFPMIVKSFKDRHMRNPYEINLMDE--LTLRGITQYYAFVEEKQKVHCLNTLFSKL 274
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S +R L K + E + H+ M Q+ R + F+ G R LV +D
Sbjct: 275 QINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSD 334
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI ++ D L +++
Sbjct: 335 LLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINW-DDRFNLYKIEQ 393
Query: 407 RFEVDIKELPEQIDTSTYM 425
+I+ +P+ ID Y+
Sbjct: 394 ELGTEIQPIPQNIDKKLYV 412
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 147/375 (39%), Positives = 220/375 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L+ ELLR I GFE PS +Q I + G DVI QA+SG GKTA F ++ LQQ
Sbjct: 32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 91
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + + AL+L TRELA QI Y+ + GG N++ +L++ C
Sbjct: 92 IDTSIRECQALILAPTRELATQIQRVVMALGEYMK-VHSHACIGGTNVREDARILESGC- 149
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
+VVGTPGR+ + K L + ++ F+LDE D+ML S + +Q++FKM P D QV++
Sbjct: 150 HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEML-SRGFKDQIQDVFKMLPPDVQVIL 208
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN---DLLD 284
SAT+ ++ V + FM+DP+ I V E +LTL G+ Q Y+ + + +N KL DL D
Sbjct: 209 LSATMPPDVLEVSRCFMRDPVSILVKKE-ELTLEGIKQFYVNVKQ--ENWKLGTLCDLYD 265
Query: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 344
L Q VIF + + +L + + NF +H M Q +R K F+ G+ R+L+
Sbjct: 266 TLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325
Query: 345 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 404
TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F++ D IL +
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITD-DDRRILKDI 384
Query: 405 QARFEVDIKELPEQI 419
+ + I+E+P I
Sbjct: 385 EQFYHTTIEEMPANI 399
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 145/375 (38%), Positives = 227/375 (60%)
Query: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
SS F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F +
Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGL 81
Query: 105 LQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLK 163
LQ + + AL+L TRELA QI + Y+ ++ GG +K K + K
Sbjct: 82 LQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQK 140
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHD 222
+ C Q V GTPGR+L + + + L +NV+ +LDE D++L E+L ++ + +IF P +
Sbjct: 141 HGC-QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKN 199
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLND 281
QV++ SAT++K+I V +KFM DP++I V + +++L G+ Q+ + + + E K L D
Sbjct: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCD 258
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
+ D+L Q VIF + + L++ L++ NF + +H M QEER F+ G+ R+
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
L++TD+ RGID+++V++VINYD+P+ + Y+HR+GR+GRFG KG+AI F++ A D L
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKL 377
Query: 402 NQVQARFEVDIKELP 416
+++ + + I +P
Sbjct: 378 REIEKFYSIKINPMP 392
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 147/378 (38%), Positives = 223/378 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK +LLR I + GFE PS +Q E IP A+ G D++ +AK+G GKT F + TL++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+P + A++L TRELA Q + S YL I+V V GG +++ D+++ P
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLR--DDIMRLYQP 272
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++VGTPGRIL LA+ LK+ ++DE DK+L S++ + ++E+ + P +Q++
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLL-SVEFQPSIEELIQFLPESRQIL 331
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
MFSAT ++ ++++ P I + D+ LTL G+ Q+Y + E +K LN L L
Sbjct: 332 MFSATFPVTVKSFKDRYLKKPYIINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSKL 389
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + F+ G R LV TD
Sbjct: 390 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTD 449
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V+ D + Q +
Sbjct: 450 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTY-EDRFKMYQTEQ 508
Query: 407 RFEVDIKELPEQIDTSTY 424
+IK +P ID + Y
Sbjct: 509 ELGTEIKPIPSLIDKAIY 526
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 151/379 (39%), Positives = 219/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F +F LK +LL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ L+
Sbjct: 49 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET 108
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P ++ L+L TRELA Q + +L I V V GG ++ D+L+ + P
Sbjct: 109 INPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTTLR--DDILRLQDP 165
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
IVVGTPGRIL LA L FI+DE DK+L S++ ++++ + P D+QVM
Sbjct: 166 VHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL-SIEFTPVIEQLLQFHPKDRQVM 224
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ K M +P EI + DE LTL G+ Q+Y + E +K LN L L
Sbjct: 225 LFSATFPISVKEFSDKNMTNPYEINLMDE--LTLRGITQYYAFVEEKQKVHCLNTLFSKL 282
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S +R L K + E + H+ M Q+ R + F+ G R LV +D
Sbjct: 283 QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLVCSD 342
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GR+G GLAI +S ++ N ++
Sbjct: 343 LLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLYN-IER 401
Query: 407 RFEVDIKELPEQIDTSTYM 425
+I+ +P ID S Y+
Sbjct: 402 DLGTEIQPIPSTIDKSLYV 420
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 147/374 (39%), Positives = 220/374 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK ELLR I GFE PS +Q I G DVI QA+SG GKTA F +S LQ+
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ V ALV+ TRELA QI YL ++ + GG +++ D K E
Sbjct: 91 IDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSVR--DDQRKLEAG 147
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+VVGTPGR+ + L ++ F+LDE D+ML S + + E+F+ P D QV+
Sbjct: 148 IHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML-SRGFKDQIYEVFRSMPQDVQVV 206
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDA 285
+ SAT+ E+ V +FM++P+ I V + +LTL G+ Q YI + + E K L DL +
Sbjct: 207 LLSATMPSEVLDVTNRFMRNPIRILVKKD-ELTLEGIRQFYINVQKDEWKFDCLCDLYNV 265
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
++ Q VIF + + L + + E F C+H M Q ER T + F+ G+ R+L+ T
Sbjct: 266 VNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITT 325
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
D++ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+ +D+ L +++
Sbjct: 326 DILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTE-NDARQLKEIE 384
Query: 406 ARFEVDIKELPEQI 419
+ + I+E+PE I
Sbjct: 385 SYYTTQIEEMPESI 398
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 147/376 (39%), Positives = 222/376 (59%)
Query: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
+ F LKPELLR + GFE PS +Q I + G DVI QA+SG GKTA F +S
Sbjct: 24 TDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISA 83
Query: 105 LQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164
LQ+ +PN AL++ TRELA QI ++ +I+ GG ++ + L+
Sbjct: 84 LQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRDDMNALR- 141
Query: 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
E PQIVVGTPGRI + + + L ++ FILDE D+ML S + +IF++ P Q
Sbjct: 142 EGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQ 200
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
V++ SAT+ +++ V KFM+DP+ I V + +LTL G+ Q YI + + E K L+DL
Sbjct: 201 VVLLSATMPQDVLEVTTKFMRDPVRILVKKQ-ELTLEGIKQFYIAVEKEEWKLDTLSDLY 259
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
+ + Q VIF + + L L +F +H M Q +R K F+ G+ R+L+
Sbjct: 260 ETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLI 319
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ A D ++ +
Sbjct: 320 ATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT-ADDVRMMRE 378
Query: 404 VQARFEVDIKELPEQI 419
++ + I+E+P +
Sbjct: 379 IEQFYSTQIEEMPMNV 394
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 151/373 (40%), Positives = 216/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ + QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLSTNIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM++P+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPMDVLEVTKKFMREPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 390
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 391 FYNTTVEEMPMNV 403
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 152/373 (40%), Positives = 214/373 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 95
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 96 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 154
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 155 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 213
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 214 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 272
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 273 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 332
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++
Sbjct: 333 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIET 391
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 392 FYNTTVEEMPMNV 404
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 150/379 (39%), Positives = 220/379 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++ LQ
Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQL 91
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+P +V AL+L TRELA Q ++ + V GG +++ D+++ P
Sbjct: 92 VKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGTSLR--DDIVRLHDP 148
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I+VGTPGR+L LA K + L F++DE DKML S + + +++I + P ++Q +
Sbjct: 149 VHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKML-SREFKGIIEQILEFFPPNRQAL 207
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ K + P EI + DE LTL G+ Q Y + E +K LN L L
Sbjct: 208 LFSATFPLAVKSFMDKHLTKPYEINLMDE--LTLKGISQFYAFVEEKQKLHCLNTLFSKL 265
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S +R L K + E + H+ M Q+ R + F++G R LV +D
Sbjct: 266 QINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSD 325
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI +S +D L +++
Sbjct: 326 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSW-NDRYSLYKIEQ 384
Query: 407 RFEVDIKELPEQIDTSTYM 425
+IK +P ID S Y+
Sbjct: 385 ELGTEIKPIPATIDKSLYV 403
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 150/379 (39%), Positives = 220/379 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++ LQ
Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQL 91
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+P +V AL+L TRELA Q ++ + V GG +++ D+++ P
Sbjct: 92 VKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGTSLR--DDIVRLHDP 148
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I+VGTPGR+L LA K + L F++DE DKML S + + +++I + P ++Q +
Sbjct: 149 VHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKML-SREFKGIIEQILEFFPPNRQAL 207
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ K + P EI + DE LTL G+ Q Y + E +K LN L L
Sbjct: 208 LFSATFPLAVKSFMDKHLTKPYEINLMDE--LTLKGISQFYAFVEEKQKLHCLNTLFSKL 265
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S +R L K + E + H+ M Q+ R + F++G R LV +D
Sbjct: 266 QINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSD 325
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI +S +D L +++
Sbjct: 326 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSW-NDRYSLYKIEQ 384
Query: 407 RFEVDIKELPEQIDTSTYM 425
+IK +P ID S Y+
Sbjct: 385 ELGTEIKPIPATIDKSLYV 403
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 149/376 (39%), Positives = 214/376 (56%)
Query: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
+ F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S
Sbjct: 36 TDNFDDMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 95
Query: 105 LQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164
LQQ E + ALVL TRELA QI Y+ GG N++ L+
Sbjct: 96 LQQLEIEQKETQALVLAPTRELAQQIQKVILALGDYM-GASCHACIGGTNVRNEMQKLQA 154
Query: 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
E P IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ + Q
Sbjct: 155 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLSTNIQ 213
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
V++ SAT+ ++ V KFM++P+ I V E +LTL G+ Q YI + E K L DL
Sbjct: 214 VVLLSATMPADVLEVTTKFMREPVRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLY 272
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
+ L Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+
Sbjct: 273 ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLI 332
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL
Sbjct: 333 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRD 391
Query: 404 VQARFEVDIKELPEQI 419
++ + ++E+P +
Sbjct: 392 IETFYNTTVEEMPMNV 407
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 145/379 (38%), Positives = 221/379 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ ++ L+L TRELA Q + ++ ++KV V GG ++ D+++ N+
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM-NVKVMVTTGGTTLR--DDIIRLNDT 162
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
IVVGTPGR+L LA F++DE DK+L S + ++++ P ++Q+
Sbjct: 163 VHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLL-SPEFTPIIEQLLSYFPKNRQIS 221
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ K + P EI + DE LTL G+ Q+Y + E +K LN L L
Sbjct: 222 LYSATFPLIVKNFMDKHLNKPYEINLMDE--LTLRGVTQYYAFVDESQKVHCLNTLFSKL 279
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S +R L K + E + H+ M Q R + F+ G R LV +D
Sbjct: 280 QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSD 339
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG +GLAI+F+S A D L +++
Sbjct: 340 LLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWA-DRFNLYRIEN 398
Query: 407 RFEVDIKELPEQIDTSTYM 425
+I+ +P ID S Y+
Sbjct: 399 ELGTEIQPIPPSIDPSLYV 417
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 148/374 (39%), Positives = 218/374 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+
Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
N AL+L TRELA QI + YL + V GG ++ + ++
Sbjct: 85 INENEKATQALILAPTRELALQIKNVITAIGLYLK-VTVHASIGGTSMSDDIEAFRSGV- 142
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
QIVVGTPGR+L + + V+ FILDE D+ML S + + IF++ P Q+++
Sbjct: 143 QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSS-GFKEQIYNIFRLLPETTQIVL 201
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE--KNRKLNDLLDA 285
SAT+ +++ V KFM +P+ I V + +LTL G+ Q YI + ELE K L DL D+
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKD-ELTLEGIKQFYINV-ELEDYKFDCLCDLYDS 259
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
+ Q VIF + S+ L L E +F IH+ + Q ER T K F+ G+ RIL++T
Sbjct: 260 ISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIST 319
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
DL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D ++ +++
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDR-DVGMMREIE 378
Query: 406 ARFEVDIKELPEQI 419
+ I+E+P I
Sbjct: 379 KFYSTQIEEMPADI 392
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 145/373 (38%), Positives = 221/373 (59%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F + LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+
Sbjct: 25 FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQK 84
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ N Q AL+L TRELA QI ++ +I+ GG +++ L++ P
Sbjct: 85 IDTNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTSVRDDMKALQDG-P 142
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Q+VVGTPGR+ + + + L ++ F+LDE D+ML S + +IF++ P QV++
Sbjct: 143 QVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVL 201
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ +++ V KFM+DP+ I V + +LTL G+ Q YI + + E K L+DL + +
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKD-ELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 260
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF + + L L +F +H M Q +R K F+ G+ R+L+ATD
Sbjct: 261 TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATD 320
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ A D ++ +++
Sbjct: 321 LLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT-ADDVRMMREIEQ 379
Query: 407 RFEVDIKELPEQI 419
+ I+E+P +
Sbjct: 380 FYSTQIEEMPMNV 392
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 148/374 (39%), Positives = 218/374 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+
Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
N AL+L TRELA QI + YL + V GG ++ + ++
Sbjct: 85 INENEKATQALILAPTRELALQIKNVITAIGLYLK-VTVHASIGGTSMSDDIEAFRSGV- 142
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
QIVVGTPGR+L + + V+ FILDE D+ML S + + IF++ P Q+++
Sbjct: 143 QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSS-GFKEQIYNIFRLLPETTQIVL 201
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE--KNRKLNDLLDA 285
SAT+ +++ V KFM +P+ I V + +LTL G+ Q YI + ELE K L DL D+
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKD-ELTLEGIKQFYINV-ELEDYKFDCLCDLYDS 259
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
+ Q VIF + S+ L L E +F IH+ + Q ER T K F+ G+ RIL++T
Sbjct: 260 ISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIST 319
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
DL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D ++ +++
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDR-DVGMMREIE 378
Query: 406 ARFEVDIKELPEQI 419
+ I+E+P I
Sbjct: 379 KFYSTQIEEMPADI 392
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 145/378 (38%), Positives = 221/378 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK +LL+ I + GFE PS +Q E IP A+ G D++ +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+PN + A++L TRELA Q + S YL +I+V V GG +++ D+++ P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLR--DDIMRLHQP 242
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++VGTPGRIL L + LK+ ++DE DK+L S + + ++E+ + P ++Q +
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLL-SAEFQPSLEELIQFLPQNRQFL 301
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
MFSAT ++ + ++ P I + D+ LTL G+ Q+Y + E +K LN L L
Sbjct: 302 MFSATFPVTVKAFKDRHLRKPYVINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSKL 359
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + F+ G R LV TD
Sbjct: 360 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTD 419
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V+ D + Q +
Sbjct: 420 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTY-EDRFKMYQTEQ 478
Query: 407 RFEVDIKELPEQIDTSTY 424
+IK +P ID + Y
Sbjct: 479 ELGTEIKPIPSNIDQAIY 496
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 146/378 (38%), Positives = 218/378 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + + A+++ TRELA Q + +L I+V V GG ++K D+++ P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLK--DDIMRLYQP 249
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++VGTPGRIL L + LK+ ++DE DK+L S + + V+ + P +Q++
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL-SQEFQPSVEHLISFLPESRQIL 308
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
MFSAT ++ +F+ +P I + DE LTL G+ Q Y + E +K LN L L
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINLMDE--LTLKGITQFYAFVEERQKIHCLNTLFSKL 366
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + F+ G R LV TD
Sbjct: 367 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 426
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG GLA+ ++ D L +++
Sbjct: 427 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITY-EDRFNLYRIEQ 485
Query: 407 RFEVDIKELPEQIDTSTY 424
+IK++P ID + Y
Sbjct: 486 ELGTEIKQIPPHIDQAIY 503
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 147/370 (39%), Positives = 210/370 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 389
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 390 FYNTSIEEMP 399
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 144/379 (37%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 90 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 149
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+VL TRELA Q+ S +L IKV GG N++ D+++ +E
Sbjct: 150 IDLKKDYIQAIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGTNLR--DDIMRLDEI 207
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+++ TPGRIL L + + V+ ++DE DK+L S D +++I P +Q++
Sbjct: 208 VHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLL-SQDFVVLIEDIISFLPKKRQIL 266
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ K +Q P EI + DE LTL G+ Q+Y ++E +K LN L L
Sbjct: 267 LYSATFPISVQKFMTKHLQKPYEINLMDE--LTLKGITQYYAYVTERQKVHCLNTLFSRL 324
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 325 QINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTD 384
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P +A+TYLHR+GR+GR+G GLAI ++S D L ++
Sbjct: 385 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITS-EDRFNLKGIED 443
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ DIK +P ID S Y+
Sbjct: 444 QLMTDIKPIPSSIDKSLYV 462
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 147/373 (39%), Positives = 212/373 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L+ LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLREALLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ A+VL TRELA QI Y+ A GG N++ L+ + P
Sbjct: 94 IDVELKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACI-GGTNVRNDVQKLQADVP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F LDE D+ML S + + EIF+ D QV++
Sbjct: 153 HIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEML-SRGFKDQIYEIFQKLATDTQVIL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ +E+ V KFM+DP+ I V E +LTL G+ Q YI + + E K L DL + L
Sbjct: 212 LSATMPQEVLEVTTKFMRDPVRILVKKE-ELTLEGIRQFYINVEKEEWKLDTLCDLYETL 270
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER K F+ G+ R+L+ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSRVLITTD 330
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI ++ D L ++
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMITE-DDKRTLRDIET 389
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 390 FYNTTVEEMPMNV 402
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 145/379 (38%), Positives = 219/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK+G GKT + + L+Q
Sbjct: 60 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+P + ALV+ TRELA Q + +L DI+V V GG +K D+L+ +
Sbjct: 120 IDPTKDYIQALVMVPTRELALQTSQICIELAKHL-DIRVMVTTGGTILK--DDILRIYQK 176
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Q+++ TPGRIL L K + + R +LDE DK+L SLD + + + P D Q++
Sbjct: 177 VQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLL-SLDFQGMLDHVILKLPKDPQIL 235
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ +K +++P EI + +E LTL G+ Q+Y + E +K LN L L
Sbjct: 236 LFSATFPLTVKNFMEKHLREPYEINLMEE--LTLKGVTQYYAFVQERQKVHCLNTLFSKL 293
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + E + IH+ M+Q R + F++G R LV +D
Sbjct: 294 QINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSD 353
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGID++ VN+VIN+D P A+TYLHR+GR+GRFG G+AI ++ D L++++
Sbjct: 354 LFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFD-LHRIEK 412
Query: 407 RFEVDIKELPEQIDTSTYM 425
+IK +P+ ID + Y+
Sbjct: 413 ELGTEIKPIPKVIDPALYV 431
>UNIPROTKB|H0Y400 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL662847 EMBL:AL662801
EMBL:CR753892 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 EMBL:CT009531 Ensembl:ENST00000412386
Ensembl:ENST00000417023 Ensembl:ENST00000417995
Ensembl:ENST00000422243 Ensembl:ENST00000428107
Ensembl:ENST00000433293 Ensembl:ENST00000445602
Ensembl:ENST00000455400 Uniprot:H0Y400
Length = 187
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 127/178 (71%), Positives = 148/178 (83%)
Query: 247 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 306
PMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +
Sbjct: 10 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 69
Query: 307 LLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP 366
LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP
Sbjct: 70 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 129
Query: 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 424
+ +DTYLHRV RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y
Sbjct: 130 EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 187
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 146/375 (38%), Positives = 217/375 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR + GFE PS +Q I I G DV+ QA+SG GKT F ++ LQ+
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + AL+L TRELA QI + ++ DIKV GG + + L++
Sbjct: 84 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDA-- 140
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
QIVVGTPGR+ + + ++ FILDE D+ML S + + +IF + P QV++
Sbjct: 141 QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQVVL 199
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KFM++P+ I V + +LTL G+ Q Y+ + E E K L DL D++
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEGIKQFYVNVEEEEYKYECLTDLYDSI 258
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF + + EL L F I+S + Q+ER T K F+ G+ RIL++TD
Sbjct: 259 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 318
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++ D + +++
Sbjct: 319 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEK 377
Query: 407 RFEVDIKELPEQIDT 421
+ I+ELP I T
Sbjct: 378 FYSTQIEELPSDIAT 392
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 146/375 (38%), Positives = 217/375 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR + GFE PS +Q I I G DV+ QA+SG GKT F ++ LQ+
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + AL+L TRELA QI + ++ DIKV GG + + L++
Sbjct: 84 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDA-- 140
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
QIVVGTPGR+ + + ++ FILDE D+ML S + + +IF + P QV++
Sbjct: 141 QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQVVL 199
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KFM++P+ I V + +LTL G+ Q Y+ + E E K L DL D++
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEGIKQFYVNVEEEEYKYECLTDLYDSI 258
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF + + EL L F I+S + Q+ER T K F+ G+ RIL++TD
Sbjct: 259 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 318
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++ D + +++
Sbjct: 319 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEK 377
Query: 407 RFEVDIKELPEQIDT 421
+ I+ELP I T
Sbjct: 378 FYSTQIEELPSDIAT 392
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 147/373 (39%), Positives = 211/373 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L+ LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 57 FDDMNLRETLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 116
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 117 IDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEVQKLQAEAP 175
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + K LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 176 HIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEML-SRGFKDQIYEIFQKLSTSIQVVL 234
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ E+ V KFM++P+ I V E +LTL G+ Q YI + + E K L DL + L
Sbjct: 235 LSATMPAEVLDVTTKFMREPVRILVKKE-ELTLEGIRQFYINVEKEEWKLDTLCDLYETL 293
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q++R + F+ G+ R+L+ TD
Sbjct: 294 TITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITTD 353
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 354 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-DDKRTLRDIET 412
Query: 407 RFEVDIKELPEQI 419
+ ++E+P +
Sbjct: 413 FYNTTVEEMPMNV 425
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 142/379 (37%), Positives = 222/379 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G +++ +AK+G GKTA F + L++
Sbjct: 62 FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEK 121
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + L+L TRELA Q + ++ ++ V GG +++ +D+++
Sbjct: 122 CNTHKNFIQGLILVPTRELALQTSAMIKELGKHMK-VQCMVTTGGTSLR--EDIMRLYNV 178
Query: 167 PQIVVGTPGRILALARDKDLS-LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
I+ GTPGRIL LA +KD++ L ++DE DK+L S + + V+E+ K P +KQ+
Sbjct: 179 VHILCGTPGRILDLA-NKDVANLSGCHIMVMDEADKLL-SPEFQPIVEELMKFLPKEKQI 236
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285
+M+SAT ++ ++ D EI + DE LTL G+ Q+Y + E +K LN L
Sbjct: 237 LMYSATFPVTVKEFRAIYLSDAHEINLMDE--LTLKGITQYYAFVKERQKVHCLNTLFAK 294
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
L NQ +IF S++R L K + E + S IH+ MSQ R + F+ G R LV++
Sbjct: 295 LQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSS 354
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
DL RGIDI+ VN+VIN+D P +++TYLHR+GR+GR+G GLAI ++ D L +++
Sbjct: 355 DLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITF-EDRFNLYKIE 413
Query: 406 ARFEVDIKELPEQIDTSTY 424
+I+ +P +ID S Y
Sbjct: 414 VELGTEIQPIPNEIDPSLY 432
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 142/378 (37%), Positives = 218/378 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK +LLR I + G+ PS +Q + IP A+ G D++ +AK+G GKTA F++ L++
Sbjct: 51 FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEK 110
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
T+P + L+L TRELA Q + Y+ +++V GG ++K D+++ P
Sbjct: 111 TDPTKDVIQVLILVPTRELALQTSQVCKELGKYM-NVQVMASTGGTSLK--DDIMRLYNP 167
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I+V TPGR+L LA+ +L N I+DE DK+L S + + V+++ P +Q++
Sbjct: 168 VHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLL-SQEFQPLVEQLINFLPQQRQIL 226
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT ++ + ++Q EI + +E LTL G+ Q+Y + E +K LN L L
Sbjct: 227 LFSATFPVTVKSFKEHYLQQAFEINLMEE--LTLKGVTQYYAFVEERQKIHCLNTLFSKL 284
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q R + F+ G R LV++D
Sbjct: 285 QINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSD 344
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P ++TYLHR+GR+GRFG GLAI ++ D L +++
Sbjct: 345 LFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITY-EDRFSLYKIEQ 403
Query: 407 RFEVDIKELPEQIDTSTY 424
+IK +P ID S Y
Sbjct: 404 ELGTEIKPIPPVIDKSLY 421
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 145/370 (39%), Positives = 207/370 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ GG N++ L+ E P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+ + + LS K ++ F+LDE D+ML S + + +IF+ + QV++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVL 211
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I LTL G+ Q YI + E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRIX------LTLEGIRQFYINVEREEWKLDTLCDLYETL 265
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 266 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 325
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI V+ D L ++
Sbjct: 326 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIET 384
Query: 407 RFEVDIKELP 416
+ I+E+P
Sbjct: 385 FYNTSIEEMP 394
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 141/371 (38%), Positives = 218/371 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F L+ ELLR I + GFE PS +Q I I G D I QA+SG GKTA F + LQ
Sbjct: 34 FESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQC 93
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E N L+L TRELA QI S ++ +I+V GG N+ D+ K E
Sbjct: 94 VEVNVRSPQVLILSPTRELAQQIQKVALALSEFM-NIQVHACVGGKNLS--DDVKKLETG 150
Query: 168 -QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
IV GTPGR+L + K L ++++ ILDE D+ML SL ++ + ++++ P+ Q++
Sbjct: 151 VHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEML-SLGFQQQINDVYRYLPNGTQIV 209
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDA 285
+ SATL++++ + +KFM P+ I + + +LTL G+ Q ++ + + + K L D+ D+
Sbjct: 210 LVSATLTQDVVSMTEKFMTKPVRILLKRD-ELTLDGIKQFFVSVEKEDWKFGTLCDIYDS 268
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
L Q VIF + + +L + + + NF +H M Q+ER K F+ G R+L+ T
Sbjct: 269 LTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITT 328
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
D++ RGID+++V++VINYD+P + Y+HR+GR+GRFG KG+AI FV + SD IL ++
Sbjct: 329 DILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKN-SDIRILRDIE 387
Query: 406 ARFEVDIKELP 416
+ I E+P
Sbjct: 388 QFYSTQIDEMP 398
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 139/379 (36%), Positives = 219/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + +++V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>UNIPROTKB|F8W0J0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CT009531 IPI:IPI00893580 ProteinModelPortal:F8W0J0 SMR:F8W0J0
Ensembl:ENST00000552820 ArrayExpress:F8W0J0 Uniprot:F8W0J0
Length = 183
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 126/179 (70%), Positives = 148/179 (82%)
Query: 248 MEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 307
MEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +L
Sbjct: 1 MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 60
Query: 308 LVECNFPSICIHSGMSQEER-LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP 366
LVE NFP+I IH GM QEER L+RY+ FK+ +RILVAT+L GRG+DIERVNI NYDMP
Sbjct: 61 LVEQNFPAIAIHRGMPQEERWLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 120
Query: 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
+ +DTYLHRV RAGRFGTKGLAITFVS +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct: 121 EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 179
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 139/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 139/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 139/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 139/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 139/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 139/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +V+ +LDE DK+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 144/374 (38%), Positives = 216/374 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I G+E PS VQ I Q G D I QA+SG GKTA F +S LQ
Sbjct: 27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQV 86
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + ALVL TRELA QI Y+ +++ GG NI +D+ K +
Sbjct: 87 IDTVVRETQALVLSPTRELATQIQSVIMALGDYM-NVQCHACIGGTNIG--EDIRKLDYG 143
Query: 168 QIVV-GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Q VV GTPGR+ + R + L ++++ +LDE D++L R + ++++ P QV+
Sbjct: 144 QHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNR-GFREQIYDVYRYLPPATQVV 202
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDA 285
+ SATL ++ + KFM DP+ + V + +LTL G+ Q++I + + E K L DL D
Sbjct: 203 VVSATLPYDVLDMTTKFMTDPVRVLVKRD-ELTLEGIKQYFIAVEKEEWKFDTLCDLYDT 261
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
L Q VIF + + L + E NF +H M Q+ER + + F++GN R+L++T
Sbjct: 262 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIST 321
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
D+ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S D IL ++
Sbjct: 322 DVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIE 380
Query: 406 ARFEVDIKELPEQI 419
+ I E+P +
Sbjct: 381 LYYSTQIDEMPMNV 394
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 138/379 (36%), Positives = 219/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 158 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 215
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + +++V+ +LDE +K+L S D + +++I P ++Q++
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLL-SQDFVQIMEDIILTLPKNRQIL 274
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 275 LYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 332
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 333 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 451
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID S Y+
Sbjct: 452 QLGTEIKPIPSNIDKSLYV 470
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 141/385 (36%), Positives = 221/385 (57%)
Query: 38 KGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKT 97
KG + +H + F LKP+LL+ I GFE PS +Q I Q I G D I QA+SG GKT
Sbjct: 20 KG-IKVHRT-FESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKT 77
Query: 98 AVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI 157
A F + L+ + + AL+L TRELA QI + + Y+ +I GG N+
Sbjct: 78 ATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYM-NIHTHACIGGKNVG- 135
Query: 158 HKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216
+D+ K + QIV GTPGR++ + + ++L +N++ ILDE D++ + + EI+
Sbjct: 136 -EDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTK-GFKEQIYEIY 193
Query: 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-K 275
K P QV++ SATL +E+ + KF DP++I V + +++L G+ Q+Y++ + K
Sbjct: 194 KHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRD-EISLSGIKQYYVQCEREDWK 252
Query: 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK 335
L DL D L Q VIF + + L + + NF + +H M Q+ER + F+
Sbjct: 253 FDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312
Query: 336 EGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395
GN R+L++TD+ RGID+++V++VINYD+P + Y+HR+GR+GRFG KG AI ++
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITK- 371
Query: 396 SDSDILNQVQARFEVDIKELPEQID 420
D L + + + IKE+P I+
Sbjct: 372 DDVVTLKEFEKYYSTKIKEMPMNIN 396
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 137/379 (36%), Positives = 218/379 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++
Sbjct: 97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+ + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++
Sbjct: 157 LDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDT 214
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L + + +++ +LDE DK+L S D + +++I P ++Q++
Sbjct: 215 VHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLL-SQDFMQIMEDIIMTLPKNRQIL 273
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT ++ +Q P EI + +E LTL G+ Q+Y ++E +K LN L L
Sbjct: 274 LYSATFPLSVQKFMTLHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRL 331
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + + + IH+ M QE R + F+ G R LV TD
Sbjct: 332 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 391
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI ++ D L ++
Sbjct: 392 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY-DDRFNLKSIEE 450
Query: 407 RFEVDIKELPEQIDTSTYM 425
+ +IK +P ID + Y+
Sbjct: 451 QLGTEIKPIPSSIDKNLYV 469
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 144/376 (38%), Positives = 218/376 (57%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
S F + LK +LLR I G+E PS VQ I Q G DVI QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q + + AL+L TRELA QI + ++ +++ GG ++ D+ K +
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM-NVQCHACIGGTSVG--NDIKKLD 137
Query: 166 CPQIVV-GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
Q VV GTPGR+ + R ++L +NV+ ILDE D++L + + +I++ P Q
Sbjct: 138 YGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ-GFKEQIYDIYRYLPPGTQ 196
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
V++ SATL +++ + KF +P+ I V + +LTL GL Q++I + + E K L DL
Sbjct: 197 VVVVSATLPQDVLEMTNKFTTNPVRILVKRD-ELTLEGLKQYFIAVEKEEWKFDTLCDLY 255
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
D L Q VIF S + L + + E NF +H M Q+ER + F++GN R+L+
Sbjct: 256 DTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLI 315
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
TD+ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV++ D IL
Sbjct: 316 CTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTN-EDVRILRD 374
Query: 404 VQARFEVDIKELPEQI 419
++ + I E+P I
Sbjct: 375 IEQYYSTVIDEMPMNI 390
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 144/369 (39%), Positives = 215/369 (58%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L +LLR I GFE PS +Q I + G D I QA+SG GKTA FV+S+LQ +
Sbjct: 30 LNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDY 89
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVG 172
AL+L TRELA QI YL +K GG ++ D LK +VVG
Sbjct: 90 VACQALILAPTRELAQQIQKVVLALGDYLK-VKCHACVGGTVVREDIDKLKQGV-HMVVG 147
Query: 173 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232
TPGR+ + + L + ++ FILDE D+ML S + + E+FK D QV +FSAT+
Sbjct: 148 TPGRVYDMIDKRHLGVDRLKLFILDEADEML-SRGFKAQIYEVFKKLVPDIQVALFSATM 206
Query: 233 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQV 291
+EI + +FM+DP I V + +LTL G+ Q Y+ + + E K L DL + L Q
Sbjct: 207 PQEILELTTRFMRDPKTILVKKD-ELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQS 265
Query: 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351
+I+ + + L + + F C+H M Q++R + F+ G+ R+LV TDL+ RG
Sbjct: 266 IIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARG 325
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS-DSDILNQVQARFEV 410
ID+++V++VINYD+P S DTY+HR+GR+GRFG KG+AI FV++ + D L ++++ +
Sbjct: 326 IDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYST 385
Query: 411 DIKELPEQI 419
I+E+P ++
Sbjct: 386 QIEEMPLEV 394
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 144/369 (39%), Positives = 215/369 (58%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L +LLR I GFE PS +Q I + G D I QA+SG GKTA FV+S+LQ +
Sbjct: 30 LNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDY 89
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVG 172
AL+L TRELA QI YL +K GG ++ D LK +VVG
Sbjct: 90 VACQALILAPTRELAQQIQKVVLALGDYLK-VKCHACVGGTVVREDIDKLKQGV-HMVVG 147
Query: 173 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232
TPGR+ + + L + ++ FILDE D+ML S + + E+FK D QV +FSAT+
Sbjct: 148 TPGRVYDMIDKRHLGVDRLKLFILDEADEML-SRGFKAQIYEVFKKLVPDIQVALFSATM 206
Query: 233 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQV 291
+EI + +FM+DP I V + +LTL G+ Q Y+ + + E K L DL + L Q
Sbjct: 207 PQEILELTTRFMRDPKTILVKKD-ELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQS 265
Query: 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351
+I+ + + L + + F C+H M Q++R + F+ G+ R+LV TDL+ RG
Sbjct: 266 IIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARG 325
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS-DSDILNQVQARFEV 410
ID+++V++VINYD+P S DTY+HR+GR+GRFG KG+AI FV++ + D L ++++ +
Sbjct: 326 IDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYST 385
Query: 411 DIKELPEQI 419
I+E+P ++
Sbjct: 386 QIEEMPLEV 394
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 137/369 (37%), Positives = 212/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 46 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 105
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 106 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 162
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 163 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 221
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 222 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 280
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 281 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 340
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 341 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 399
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 400 QIDEMPMNV 408
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 137/369 (37%), Positives = 212/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 161
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 279
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 280 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 339
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 340 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 398
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 399 QIDEMPMNV 407
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 137/369 (37%), Positives = 212/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 161
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 279
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 280 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 339
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 340 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 398
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 399 QIDEMPMNV 407
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 137/369 (37%), Positives = 212/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 161
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 279
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 280 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 339
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 340 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 398
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 399 QIDEMPMNV 407
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 137/369 (37%), Positives = 212/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 161
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 279
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 280 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 339
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 340 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 398
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 399 QIDEMPMNV 407
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 137/369 (37%), Positives = 212/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 161
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 279
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 280 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 339
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 340 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 398
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 399 QIDEMPMNV 407
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 144/404 (35%), Positives = 223/404 (55%)
Query: 24 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG 83
P + K + A KG + F D+ LK ELL I + G+E PS +Q E IP A+ G
Sbjct: 81 PKDLRMKTSDVTATKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG 134
Query: 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV-TALVLCHTRELAYQICHEFERFSTYLP 142
D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++
Sbjct: 135 RDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVSQICIQVSKHMG 194
Query: 143 DIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201
+KV GG N++ D+++ +E +V+ TPGRIL L + + V+ +LDE DK
Sbjct: 195 GVKVMATTGGTNLR--DDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADK 252
Query: 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 261
+L S D + ++EI +Q++++SAT ++ +Q P EI + +E LTL
Sbjct: 253 LL-SQDFVQMMEEILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLK 309
Query: 262 GLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
G+ Q+Y ++E +K LN L L NQ +IF S R L K + + + IH+
Sbjct: 310 GVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAK 369
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
M QE R + F+ G R LV TDL RGIDI+ VN+VIN+D P +TYLHR+GR+GR
Sbjct: 370 MRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGR 429
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425
FG GLAI ++ D L ++ + +IK +P ID S Y+
Sbjct: 430 FGHLGLAINLITY-DDRFNLKGIEEQLGTEIKPIPSSIDKSLYV 472
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 144/374 (38%), Positives = 219/374 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQ 106
F D LKPELLR I GFE PS +Q I ILG DV+ QA+SG GKTA F +S LQ
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAI-MPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 107 QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166
+ + + Q AL+L TRELA QI L +++ GG ++ L+
Sbjct: 80 KIDTSLKQCQALILAPTRELAQQIQKVVVALGD-LMNVECHACIGGTLVRDDMAALQAGV 138
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+VVGTPGR+ + + + L V+ F+LDE D+ML S + + +IF++ P QV+
Sbjct: 139 -HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEML-SRGFKDQIYDIFQLLPPTAQVV 196
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDA 285
+ SAT+ +++ V KFM+DP+ I V + +LTL G+ Q Y+ + + E K L DL +
Sbjct: 197 LLSATMPQDVLEVTTKFMRDPIRILVKKD-ELTLEGIKQFYVAVEKEEWKLDTLCDLYET 255
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
+ Q VIF + + L + L E +F +H M Q +R T F+ G+ RIL+ T
Sbjct: 256 VTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITT 315
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
DL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG++I FV++ D ++ +++
Sbjct: 316 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTN-DDVRMMREIE 374
Query: 406 ARFEVDIKELPEQI 419
+ I+E+P I
Sbjct: 375 QFYNTHIEEMPMNI 388
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 137/369 (37%), Positives = 211/369 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 40 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQV 99
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 100 RETQALILAPTRELAGQIQKVLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 156
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV + SAT
Sbjct: 157 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVCLISAT 215
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 216 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 274
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 275 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 334
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 335 GLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 393
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 394 QIDEMPMNV 402
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 142/368 (38%), Positives = 211/368 (57%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+P+LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ + +
Sbjct: 48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISL 107
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVG 172
Q ALVL TRELA QI YL +K GG +++ + +L++ +VVG
Sbjct: 108 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQSGV-HVVVG 165
Query: 173 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232
TPGR+ L R + L ++ F+LDE D+ML S + + +IF++ P QV +FSAT+
Sbjct: 166 TPGRVFDLLRRQSLRADAIKMFVLDEADEML-SRGFKDQIYDIFQLLPSKVQVGVFSATM 224
Query: 233 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQV 291
E + +KFM P+ I V + +LTL G+ Q Y+ + + E K L DL + L Q
Sbjct: 225 PPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQS 283
Query: 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351
VIFV + + L + + H M Q R + F+ G+ R+L+ TDL+ RG
Sbjct: 284 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 343
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVD 411
ID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI F++S D ++ +Q + V
Sbjct: 344 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTS-EDERMMADIQRFYNVV 402
Query: 412 IKELPEQI 419
++ELP +
Sbjct: 403 VEELPSNV 410
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 136/379 (35%), Positives = 213/379 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF L +LL I + G+E PS +Q I A+ G D++ +AK+G GKT + + +++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+P + A+V+ TRELA Q S ++ +KV V GG +++ D+++ N
Sbjct: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDLR--DDIMRLNGT 161
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L +++ + +LDE DK+L S D + + + P ++QVM
Sbjct: 162 VHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLL-SQDFQGILDRLINFLPKERQVM 220
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT + +K M P EI + +E LTL G+ Q+Y + E +K LN L L
Sbjct: 221 LYSATFPNTVTSFMQKHMHKPYEINLMEE--LTLLGVTQYYAFVQEKQKVHCLNTLFRKL 278
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + E + IHS M+Q R + F++GN R LV +D
Sbjct: 279 QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG G+AI ++ D L +++
Sbjct: 339 LLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITY-EDRHTLRRIEQ 397
Query: 407 RFEVDIKELPEQIDTSTYM 425
I+ +P+ +D Y+
Sbjct: 398 ELRTRIEPIPKTVDPKLYV 416
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 136/379 (35%), Positives = 213/379 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF L +LL I + G+E PS +Q I A+ G D++ +AK+G GKT + + +++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NEC 166
+P + A+V+ TRELA Q S ++ +KV V GG +++ D+++ N
Sbjct: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDLR--DDIMRLNGT 161
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+V+ TPGRIL L +++ + +LDE DK+L S D + + + P ++QVM
Sbjct: 162 VHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLL-SQDFQGILDRLINFLPKERQVM 220
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
++SAT + +K M P EI + +E LTL G+ Q+Y + E +K LN L L
Sbjct: 221 LYSATFPNTVTSFMQKHMHKPYEINLMEE--LTLLGVTQYYAFVQEKQKVHCLNTLFRKL 278
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
NQ +IF S R L K + E + IHS M+Q R + F++GN R LV +D
Sbjct: 279 QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG G+AI ++ D L +++
Sbjct: 339 LLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITY-EDRHTLRRIEQ 397
Query: 407 RFEVDIKELPEQIDTSTYM 425
I+ +P+ +D Y+
Sbjct: 398 ELRTRIEPIPKTVDPKLYV 416
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 142/374 (37%), Positives = 209/374 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F LK ELLR I GFE PS +Q I + G DVI QA+SG GKTA F +S LQ
Sbjct: 28 FNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQS 87
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + L L TRELA QI + +++ V GG N+ +D+ K +
Sbjct: 88 LDTTLRETQVLCLSPTRELAVQIQKVILALGDMM-NVQCHVCIGGTNLG--EDIRKLDYG 144
Query: 168 Q-IVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Q IV GTPGR+ + + + L + ++ +LDE D+ML + + ++++ P QV+
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVV 203
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDA 285
+ SATL EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDT 262
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
L Q VIF + + L + + E NF +H M Q+ER K F+ G R+L+ T
Sbjct: 263 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITT 322
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
D+ RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S D IL ++
Sbjct: 323 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDIE 381
Query: 406 ARFEVDIKELPEQI 419
+ I E+P +
Sbjct: 382 QYYSTQIDEMPVNV 395
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 139/369 (37%), Positives = 209/369 (56%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q IP + DVI QA+SG GKTA F +S LQ +
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQV 92
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVV- 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q VV
Sbjct: 93 RETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLG--EDIRKLDYGQHVVS 149
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R ++L + ++ +LDE D+ML + + +I++ P QV++ SAT
Sbjct: 150 GTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSAT 208
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 209 LPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQ 267
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
V+F + + L + E NF +H M Q++R K F+ G R+L++TD+ R
Sbjct: 268 AVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWAR 327
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV D IL ++ +
Sbjct: 328 GLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQ-DDVRILRDIEQYYST 386
Query: 411 DIKELPEQI 419
I E+P I
Sbjct: 387 QIDEMPMNI 395
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 138/369 (37%), Positives = 209/369 (56%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q +P + DVI QA+SG GKTA F +S LQ +
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQV 92
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVV- 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q VV
Sbjct: 93 RETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLG--EDIRKLDYGQHVVS 149
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R ++L + ++ +LDE D+ML + + +I++ P QV++ SAT
Sbjct: 150 GTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSAT 208
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 209 LPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQ 267
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
V+F + + L + E NF +H M Q++R K F+ G R+L++TD+ R
Sbjct: 268 AVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWAR 327
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV D IL ++ +
Sbjct: 328 GLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQ-DDVRILRDIEQYYST 386
Query: 411 DIKELPEQI 419
I E+P I
Sbjct: 387 QIDEMPMNI 395
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 136/349 (38%), Positives = 199/349 (57%)
Query: 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128
P Q +P I G DVI QA+SG GKTA F +S LQQ E + ALVL TRELA
Sbjct: 73 PPTRQRAILP-CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQ 131
Query: 129 QICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSL 188
QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS
Sbjct: 132 QIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 190
Query: 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 248
K ++ F+LDE D+ML S + + +IF+ + QV++ SAT+ ++ V KKFM+DP+
Sbjct: 191 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI 249
Query: 249 EIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 307
I V E +LTL G+ Q YI + E K L DL + L Q VIF+ + + L +
Sbjct: 250 RILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEK 308
Query: 308 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD 367
+ +F +H M Q+ER + F+ G+ R+L+ TDL+ RGID+++V++VINYD+P
Sbjct: 309 MHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 368
Query: 368 SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 416
+ + Y+HR+GR GRFG KG+AI V+ D L ++ + I+E+P
Sbjct: 369 NRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMP 416
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 136/376 (36%), Positives = 216/376 (57%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+ F D +K ++LR + + GFE PS +Q + + G DVI QA+SG GKT++ LS
Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC 94
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q + + +V AL+L TRELA Q + + +I+ GG N + +D+ K E
Sbjct: 95 QVVDTSSREVQALILSPTRELATQTEKTIQAIGLHA-NIQAHACIGG-N-SVGEDIRKLE 151
Query: 166 CP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
+V GTPGR+ + + + L + ++ ILDE D+ML S + + ++++ P D Q
Sbjct: 152 HGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEML-SRGFKDQIYDVYRYLPPDLQ 210
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
V + SATL EI + KFM +P++I V + +LTL G+ Q ++ + + E K L DL
Sbjct: 211 VCLVSATLPHEILEMTSKFMTEPVKILVKRD-ELTLEGIKQFFVAVEKEEWKFDTLCDLY 269
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
D L Q VIF + + L++ + NF +H M Q+ER F+ G+ R+L+
Sbjct: 270 DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLI 329
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
TD+ RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S D IL
Sbjct: 330 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIKILRD 388
Query: 404 VQARFEVDIKELPEQI 419
++ + I E+P +
Sbjct: 389 IEQYYSTQIDEMPMNV 404
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 131/368 (35%), Positives = 204/368 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK +L A+ D G+E PS +Q ECIP + G DV+ A++G GKTA F L LQ
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+P LVL TRELA Q+ FS ++ + V YGG + L+ + P
Sbjct: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGP 126
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
QIVVGTPGR+L + L L + +LDE D+ML + DV+ I P Q +
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTAL 185
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ + IR + ++FM++P E+ + T + Q Y + + KN L L+A D
Sbjct: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEAED 244
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
F+ +IFV++ + E+ + L + S ++ M+Q R + K+G IL+ATD+
Sbjct: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 407
RG+D+ER+++V+NYD+P +++Y+HR+GR GR G G A+ FV + + +L ++
Sbjct: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNIERT 363
Query: 408 FEVDIKEL 415
++ I E+
Sbjct: 364 MKLTIPEV 371
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 144/381 (37%), Positives = 211/381 (55%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 100 FVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159
F LQQ + Q ALVL TRELA QI Y +KV GG +++ +
Sbjct: 93 FCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQ 151
Query: 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219
+L+ +VVGTPGR+ + R + L ++ F+LDE D+ML S + + +IF++
Sbjct: 152 RILQAGV-HVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEML-SRGFKDQIYDIFQLL 209
Query: 220 PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRK 278
P QV +FSAT+ E + +KFM P+ I V + +LTL G+ Q Y+ + + + K
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEDWKLET 268
Query: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
L DL + L Q VIFV + + L + + H M Q R + F+ G+
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 328
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+ D
Sbjct: 329 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT-LDDQ 387
Query: 399 DILNQVQARFEVDIKELPEQI 419
+L +Q + V ++ELP +
Sbjct: 388 RMLFDIQKFYNVVVEELPSNV 408
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 139/355 (39%), Positives = 201/355 (56%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 100 FVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159
F LQQ + + Q ALVL TRELA QI YL +KV GG +++ +
Sbjct: 93 FCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ 151
Query: 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219
+L+ +VVGTPGR+ + + + L N++ F+LDE D+ML S + + +IF++
Sbjct: 152 RILQAGV-HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEML-SRGFKDQIYDIFQLL 209
Query: 220 PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRK 278
P QV +FSAT+ E + +KFM P+ I V + +LTL G+ Q Y+ + + E K
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLET 268
Query: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
L DL + L Q VIFV + + L + + H M Q R + F+ G+
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 328
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+
Sbjct: 329 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 129/376 (34%), Positives = 211/376 (56%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+ F + + LLR I GFE PS +Q I + G DVI Q++SG GKT VF + L
Sbjct: 17 TSFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
N + ++L TRELA Q + Y+ + + GG + L N
Sbjct: 77 NCVNRNLNETQVIILSPTRELAEQTQKVCLALADYI-HVTIYCCIGGKKMSDDIKALNNG 135
Query: 166 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
++ GTPGRI + + L K ++ ++DE D+ML + V +I++ + Q+
Sbjct: 136 V-HVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNK-GFKEQVYDIYRFLSPNTQI 193
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLD 284
++ SATL +E+ + KFM P++I V + +LTL G+ Q ++ + + + K L DL +
Sbjct: 194 ILSSATLPQEVLEITNKFMHKPVKILVKRD-ELTLEGIKQFFVSIEKEQWKYETLADLYE 252
Query: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC-IHSGMSQEERLTRYKGFKEGNKRILV 343
+L Q V+F + + L K ++E NF ++C +H+GMSQ ER F++ R+L+
Sbjct: 253 SLTITQAVVFCNTQMKVDWLTKKMLESNF-TVCKMHAGMSQSERDDIMLKFRQCKFRVLI 311
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
+TD+ GRG+D++ V++V+NYD+P+S ++Y+HR+GR+GRFG KG+AI FV + D IL
Sbjct: 312 STDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKN-DDIKILRD 370
Query: 404 VQARFEVDIKELPEQI 419
++ + I E+P I
Sbjct: 371 IEQYYSTQIDEMPMNI 386
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 129/376 (34%), Positives = 211/376 (56%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+ F + + LLR I GFE PS +Q I + G DVI Q++SG GKT VF + L
Sbjct: 17 TSFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
N + ++L TRELA Q + Y+ + + GG + L N
Sbjct: 77 NCVNRNLNETQVIILSPTRELAEQTQKVCLALADYI-HVTIYCCIGGKKMSDDIKALNNG 135
Query: 166 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
++ GTPGRI + + L K ++ ++DE D+ML + V +I++ + Q+
Sbjct: 136 V-HVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNK-GFKEQVYDIYRFLSPNTQI 193
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLD 284
++ SATL +E+ + KFM P++I V + +LTL G+ Q ++ + + + K L DL +
Sbjct: 194 ILSSATLPQEVLEITNKFMHKPVKILVKRD-ELTLEGIKQFFVSIEKEQWKYETLADLYE 252
Query: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC-IHSGMSQEERLTRYKGFKEGNKRILV 343
+L Q V+F + + L K ++E NF ++C +H+GMSQ ER F++ R+L+
Sbjct: 253 SLTITQAVVFCNTQMKVDWLTKKMLESNF-TVCKMHAGMSQSERDDIMLKFRQCKFRVLI 311
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
+TD+ GRG+D++ V++V+NYD+P+S ++Y+HR+GR+GRFG KG+AI FV + D IL
Sbjct: 312 STDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKN-DDIKILRD 370
Query: 404 VQARFEVDIKELPEQI 419
++ + I E+P I
Sbjct: 371 IEQYYSTQIDEMPMNI 386
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/370 (36%), Positives = 210/370 (56%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 47 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 106
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV-NIKIHKDL-LKNECPQIV 170
+ AL+L TRELA QI + S LP +K+ + + + K DL +E + +
Sbjct: 107 RETQALILAPTRELAVQI--QKVGTSKSLP-VKMKELHKAMGSFKQEVDLPAGHEVARCI 163
Query: 171 VGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230
G ++L + R + L + ++ +LDE D+ML + + ++++ P QV++ SA
Sbjct: 164 SGIQLQLLYMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISA 222
Query: 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFN 289
TL EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L
Sbjct: 223 TLPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 281
Query: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349
Q VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+
Sbjct: 282 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 341
Query: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFE 409
RG+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 342 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYS 400
Query: 410 VDIKELPEQI 419
I E+P +
Sbjct: 401 TQIDEMPMNV 410
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 138/384 (35%), Positives = 215/384 (55%)
Query: 38 KGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKT 97
KG I S F D + ++LR + D G++ PSE+Q + + G DVI QA+SG GKT
Sbjct: 16 KGIKPIKS--FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT 73
Query: 98 AVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI 157
++ +S Q + +V LVL +RELA Q + + +I+ GG +I
Sbjct: 74 SMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT-NIQAHACIGGKSIG- 131
Query: 158 HKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216
+D+ K E V GTPGR+ + + L K V+ +LDE D+ML S ++ + +++
Sbjct: 132 -EDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEML-SKGLKDQIYDVY 189
Query: 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-K 275
+ PHD QV + SATL +EI + +KFM DP+ I V + +LTL G+ Q+Y+ + + E K
Sbjct: 190 RALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPD-ELTLEGIKQYYVDVDKEEWK 248
Query: 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK 335
L DL L NQ +IF + + L + + NF +H Q+ER F+
Sbjct: 249 FDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFR 308
Query: 336 EGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395
R+L+A+D+ RGID++ V+ VINYD+P++ + Y+HR+GRAGRFG +G+AI FV S
Sbjct: 309 SFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKS- 367
Query: 396 SDSDILNQVQARFEVDIKELPEQI 419
SD L ++ + I+E+P +
Sbjct: 368 SDMKDLKDIERHYGTKIREMPADL 391
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/355 (35%), Positives = 201/355 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LL+++ GFE + +Q E IP A+ G D+I QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + V +V+ TRELA Q+ E + + +++ YGG +I LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGRIL K L L+NV +LDE D+ML ++ D++ I P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P I V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL++ L + + IH ++Q +R++ + FKEG+ +LVATD+
Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
>UNIPROTKB|F1NRN3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AADN02044991 IPI:IPI00820769
ProteinModelPortal:F1NRN3 Ensembl:ENSGALT00000002285 Uniprot:F1NRN3
Length = 676
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 136/382 (35%), Positives = 205/382 (53%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
S F LL P +L + +GF PS VQ + IP G+D+I QAKSG GKT VF L
Sbjct: 21 SDFGSLLLSPPVLAGLEAAGFHRPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL 80
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ L+L TRE+A QI + ++ VF GG + K LK +
Sbjct: 81 DALLLDSPATQVLILAPTREIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQDKVRLK-K 139
Query: 166 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
C I VG+PGRI L L+ ++R FILDE DK+LE + + I+ P +KQ+
Sbjct: 140 C-HIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSLPANKQM 198
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY--IKLSEL------EKNR 277
+ SAT + + +M++P + ++ +L GL Q+Y + L EK +
Sbjct: 199 LAVSATYPESLANALTMYMREPTFVRLNPTDP-SLIGLKQYYKIVNSHPLPHKTFEEKTQ 257
Query: 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L +L + FNQ ++F SRA L ++L FP+ CI M+Q +RL K+
Sbjct: 258 HLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECISGSMNQSQRLDAMAKLKQF 317
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397
+ R+L++TDL RGID E+VN+VIN D+P +TY+HR+GRAGRFGT GL++T+ +
Sbjct: 318 HCRVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGTLGLSVTYCCRGEE 377
Query: 398 SDILNQVQARFEVDIKELPEQI 419
+++ ++ + + + LPE I
Sbjct: 378 ENMMMKIAQKCNLQLLPLPEPI 399
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 135/329 (41%), Positives = 187/329 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA QI Y+ A GG N++ L+ E P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAP 153
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDAL 286
SAT+ ++ V KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF+ + + L + + +F +H M Q+ER + F+ G+ R+L+ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHR 375
L+ RGID+++V++VINYD+P + + Y+HR
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHR 360
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 136/373 (36%), Positives = 203/373 (54%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F + L +LLR I GFE PS +Q I G D+I QA+SG GKTA F + L +
Sbjct: 26 FDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSR 85
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ + + AL++ TRELA QI YL IK GG I L++
Sbjct: 86 IDISVLKCQALIIAPTRELAQQIQKVVLALGEYL-HIKSYACIGGTKITDDIQALQSGV- 143
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
+VVGTPGR+ + ++ +R F LDE D+ML S + + EIF+ P QV +
Sbjct: 144 HVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEML-SRGFKDQIYEIFRFLPKTIQVGL 202
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDLLDAL 286
FSAT++ E + KFMQ+P+ I V + +LTL G+ Q Y+ + E K L DL + L
Sbjct: 203 FSATMTDETLGITSKFMQNPVSILVKKD-ELTLEGIRQFYVNVGVEQGKFEVLTDLYETL 261
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
Q VIF + + L + E F H Q++R + F+ G R+L+ TD
Sbjct: 262 SITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHG--DQKDRDGILQAFRSGATRVLITTD 319
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
L+ RGID+++V++VIN+D+P + + Y+HR+GR+GRFG KG+AI F++ A I +++
Sbjct: 320 LLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQI-DELSR 378
Query: 407 RFEVDIKELPEQI 419
+ I E+P+ I
Sbjct: 379 HYNTYIAEMPQDI 391
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 542 (195.9 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 118/339 (34%), Positives = 194/339 (57%)
Query: 55 PE-LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG 113
PE LL A++ GF +++Q IP + G DV+ +A++G GKTA F L L + + +
Sbjct: 23 PENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIK 82
Query: 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGT 173
+ +VL TRELA Q+ E F + ++VA YGG + L+ Q+VVGT
Sbjct: 83 KPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA-QVVVGT 141
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGR++ R K L L +R +LDE D+ML ++ D+Q I P Q+ +FSAT+
Sbjct: 142 PGRLMDHLRRKSLKLDELRVCVLDEADEML-NMGFLEDIQWILDHIPKTAQMCLFSATMP 200
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVI 293
IR + +F++DP I V K + + Q+ K+S + K L + + ++++ ++I
Sbjct: 201 PAIRKIANRFLKDPEHIKVAAVKKAKAN-ITQYAWKVSGITKMTALERIAEVVEYDAMII 259
Query: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353
FV++ + ++ + L +P++ ++ ++Q +R K G ILVATD+V RG+D
Sbjct: 260 FVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLD 319
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
I R+++VINYD+P + Y+HR+GR GR G +G++I FV
Sbjct: 320 IPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFV 358
Score = 46 (21.3 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 360 VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415
V+NYD+P+ D R+ R K +A +SS + I+ + A EV + +L
Sbjct: 377 VLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMRE--IVEGMAAESEVSMIDL 430
>UNIPROTKB|F1PXG6 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000021679 Uniprot:F1PXG6
Length = 825
Score = 572 (206.4 bits), Expect = 2.6e-55, P = 2.6e-55
Identities = 141/402 (35%), Positives = 211/402 (52%)
Query: 28 ATKANGEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
A +G A+ G V + + F LL +L + +GFE PS VQ + IP G+D+
Sbjct: 45 AHDVSGPRARTGDVLLAEPADFESLLLSRPVLDGLRAAGFERPSPVQLKAIPLGRCGLDL 104
Query: 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146
I QAKSG GKT VF L L+L TRE+A QI + ++
Sbjct: 105 IVQAKSGTGKTCVFSTIALDSLVLENQSTQILILAPTREIAVQIHSVITAIGIKMEGLEC 164
Query: 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206
VF GG + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE
Sbjct: 165 HVFIGGTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 222
Query: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
+ + I+ P KQ++ SAT + + K+M+DP + ++ +L GL Q+
Sbjct: 223 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIGLKQY 281
Query: 267 YI---------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317
Y K+ E EK + L +L + FNQ ++F SRA L +L FP+ C
Sbjct: 282 YKIVNSYPLAHKIFE-EKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAEC 340
Query: 318 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 377
I M+Q +RL K + R+L++TDL RGID E+VN+V+N D+P +TY+HR+G
Sbjct: 341 ISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 400
Query: 378 RAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
RAGRFGT GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 401 RAGRFGTLGLTVTYCCRGEEENVMMKIAQKCNINLLPLPDPI 442
>UNIPROTKB|J9P828 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000050085 Uniprot:J9P828
Length = 825
Score = 572 (206.4 bits), Expect = 2.6e-55, P = 2.6e-55
Identities = 141/402 (35%), Positives = 211/402 (52%)
Query: 28 ATKANGEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
A +G A+ G V + + F LL +L + +GFE PS VQ + IP G+D+
Sbjct: 45 AHDVSGPRARTGDVLLAEPADFESLLLSRPVLDGLRAAGFERPSPVQLKAIPLGRCGLDL 104
Query: 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146
I QAKSG GKT VF L L+L TRE+A QI + ++
Sbjct: 105 IVQAKSGTGKTCVFSTIALDSLVLENQSTQILILAPTREIAVQIHSVITAIGIKMEGLEC 164
Query: 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206
VF GG + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE
Sbjct: 165 HVFIGGTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 222
Query: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
+ + I+ P KQ++ SAT + + K+M+DP + ++ +L GL Q+
Sbjct: 223 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIGLKQY 281
Query: 267 YI---------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317
Y K+ E EK + L +L + FNQ ++F SRA L +L FP+ C
Sbjct: 282 YKIVNSYPLAHKIFE-EKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAEC 340
Query: 318 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 377
I M+Q +RL K + R+L++TDL RGID E+VN+V+N D+P +TY+HR+G
Sbjct: 341 ISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 400
Query: 378 RAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
RAGRFGT GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 401 RAGRFGTLGLTVTYCCRGEEENVMMKIAQKCNINLLPLPDPI 442
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 127/375 (33%), Positives = 213/375 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F + P+++ A GF P E+Q E IP A+ G D+I A++G GKTA FV+ LQ+
Sbjct: 121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQK 180
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P + L L TRELAYQI +F + + +K V GG++ + + L + P
Sbjct: 181 LLEAPQGLFCLALAPTRELAYQIADQFNAIGSTI-GVKTCVLVGGID-SMSQSLALAKKP 238
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
+VVG+PGR+L L K +L+++++FI+DE D++ S D +V I K+ P ++
Sbjct: 239 HVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLF-SADFEEEVNNILKVIPKERNTY 297
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++ ++ + + + +P+++ V + + T+ L+Q Y+ + K+ L +L+ L
Sbjct: 298 LFSATMTSKVAKLQRASLVNPVKVQVASKYQ-TVDTLLQQYLFVPFKYKDCYLAYILNEL 356
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N +IF + + + ++ +L F +I I+ M Q +RL FK+G K ILVATD
Sbjct: 357 AGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATD 416
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+DI V++VINYD+P ++ Y+HRVGR R G G AIT V+ D ++ +++
Sbjct: 417 VAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQY-DVEMYQRIEF 475
Query: 407 RFEVDIKELPEQIDT 421
+ + P Q +T
Sbjct: 476 VLKKKLDSFPCQEET 490
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 120/348 (34%), Positives = 200/348 (57%)
Query: 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ 106
GF L P ++ A+V +G+E PS +Q + IP + G D+I QA++G GKTA F L L
Sbjct: 7 GFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH 66
Query: 107 QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166
+ +P+ + AL+L TRELA Q+ FE ++ +P + V YGG + ++N
Sbjct: 67 RIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGA 126
Query: 167 PQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
QIVV TPGR+ L RD+ + L V H +LDE D+ML+ L D++ IFK P +Q
Sbjct: 127 -QIVVATPGRLCDHLRRDEKV-LATVNHLVLDEADEMLK-LGFMDDLEVIFKAMPETRQT 183
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285
++FSATL + IR + ++ ++DP + + + + T+ + Q ++ + +K + LL+
Sbjct: 184 VLFSATLPQSIRAIAERHLKDPKHVKIQSKTQ-TVTAIEQAHLLVHADQKTSAVLSLLEV 242
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
DF+ +++FV++ +L L + + ++ ++Q +R K+G I+VAT
Sbjct: 243 EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVAT 302
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
D+ RG+D+ R+ V N DMP ++Y+HR+GR GR G +G A+ V+
Sbjct: 303 DVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVT 350
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 413 (150.4 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 85/238 (35%), Positives = 140/238 (58%)
Query: 180 LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
+ R + L + ++ +LDE D+ML + + ++++ P QV++ SATL EI +
Sbjct: 166 MIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEM 224
Query: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSV 298
KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q VIF +
Sbjct: 225 TNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 283
Query: 299 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358
+ L + + E NF +H M Q+ER + K F+ G R+L++TD+ RG+D+ +V+
Sbjct: 284 RKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 343
Query: 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 416
++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ + I E+P
Sbjct: 344 LIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEMP 400
Score = 172 (65.6 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I GFE PS +Q I Q I G DVI Q++SG GKTA F +S LQ +
Sbjct: 46 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 105
Query: 113 GQVTALVLCHTRELAYQI 130
+ AL+L TRELA QI
Sbjct: 106 RETQALILAPTRELAVQI 123
>UNIPROTKB|F1SBP3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 OMA:VEDYEHY GeneTree:ENSGT00530000062880 EMBL:CU466482
RefSeq:XP_001928579.1 UniGene:Ssc.6364 Ensembl:ENSSSCT00000007430
GeneID:100152786 KEGG:ssc:100152786 Uniprot:F1SBP3
Length = 832
Score = 569 (205.4 bits), Expect = 6.7e-55, P = 6.7e-55
Identities = 137/401 (34%), Positives = 210/401 (52%)
Query: 28 ATKANGEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
A G + G V + + F LL +L + +GFE PS VQ + IP G+D+
Sbjct: 50 AHDVGGPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDL 109
Query: 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146
I QAKSG GKT VF L L+L TRE+A QI + ++
Sbjct: 110 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGVKMEGLEC 169
Query: 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206
VF GG + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE
Sbjct: 170 HVFIGGTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 227
Query: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
+ + I+ P KQ++ SAT + + K+M++P + ++ +L GL Q+
Sbjct: 228 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDP-SLIGLKQY 286
Query: 267 YIKLSEL--------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI 318
Y ++ EK + L +L + FNQ ++F SRA L +L FP++CI
Sbjct: 287 YKVVNSYPLAHKIFEEKAQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPAVCI 346
Query: 319 HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378
M+Q +RL K+ + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GR
Sbjct: 347 SGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGR 406
Query: 379 AGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
AGRFGT GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 407 AGRFGTLGLTVTYCCRGEEENMMMKIAQKCHINLLLLPDPI 447
>UNIPROTKB|Q9UHI6 [details] [associations]
symbol:DDX20 "Probable ATP-dependent RNA helicase DDX20"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=TAS]
[GO:0005856 "cytoskeleton" evidence=TAS] [GO:0000387 "spliceosomal
snRNP assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0017053
GO:GO:0005654 GO:GO:0006917 GO:GO:0005856 GO:GO:0003677
GO:GO:0005681 GO:GO:0000244 GO:GO:0000122 GO:GO:0043065
GO:GO:0015030 GO:GO:0034660 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AF171063 EMBL:AF106019 EMBL:AK001506
EMBL:AL049557 EMBL:BC011556 EMBL:AL133598 IPI:IPI00005904
PIR:T43476 RefSeq:NP_009135.4 UniGene:Hs.591405 PDB:2OXC PDB:3B7G
PDBsum:2OXC PDBsum:3B7G ProteinModelPortal:Q9UHI6 SMR:Q9UHI6
DIP:DIP-32606N IntAct:Q9UHI6 MINT:MINT-96973 STRING:Q9UHI6
PhosphoSite:Q9UHI6 DMDM:12643886 PaxDb:Q9UHI6 PeptideAtlas:Q9UHI6
PRIDE:Q9UHI6 DNASU:11218 Ensembl:ENST00000369702 GeneID:11218
KEGG:hsa:11218 UCSC:uc001ebs.3 CTD:11218 GeneCards:GC01P112298
HGNC:HGNC:2743 HPA:CAB015427 HPA:HPA005516 HPA:HPA023541 MIM:606168
neXtProt:NX_Q9UHI6 PharmGKB:PA27209 HOGENOM:HOG000112184
HOVERGEN:HBG051330 InParanoid:Q9UHI6 KO:K13131 OMA:VEDYEHY
OrthoDB:EOG4SF95N PhylomeDB:Q9UHI6 EvolutionaryTrace:Q9UHI6
GenomeRNAi:11218 NextBio:42699 ArrayExpress:Q9UHI6 Bgee:Q9UHI6
CleanEx:HS_DDX20 Genevestigator:Q9UHI6 GermOnline:ENSG00000064703
Uniprot:Q9UHI6
Length = 824
Score = 567 (204.7 bits), Expect = 1.0e-54, P = 1.0e-54
Identities = 134/380 (35%), Positives = 201/380 (52%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F LL +L + +GFE PS VQ + IP G+D+I QAKSG GKT VF L
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
L+L TRE+A QI + ++ VF GG + K LK +C
Sbjct: 124 LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KC- 181
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I VG+PGRI L L+ ++R FILDE DK+LE + + I+ P KQ++
Sbjct: 182 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLA 241
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL--------EKNRKL 279
SAT + + K+M+DP + ++ +L GL Q+Y ++ EK + L
Sbjct: 242 VSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIGLKQYYKVVNSYPLAHKVFEEKTQHL 300
Query: 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 339
+L + FNQ ++F SRA L +L FP+ CI M+Q +RL K +
Sbjct: 301 QELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHC 360
Query: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 399
R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGRFGT GL +T+ + +
Sbjct: 361 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEEN 420
Query: 400 ILNQVQARFEVDIKELPEQI 419
++ ++ + +++ LP+ I
Sbjct: 421 MMMRIAQKCNINLLPLPDPI 440
>UNIPROTKB|F1P5C0 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AADN02044991 IPI:IPI00582962
Ensembl:ENSGALT00000040229 Uniprot:F1P5C0
Length = 753
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 136/384 (35%), Positives = 205/384 (53%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
S F LL P +L + +GF PS VQ + IP G+D+I QAKSG GKT VF L
Sbjct: 5 SDFGSLLLSPPVLAGLEAAGFHRPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL 64
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ L+L TRE+A QI + ++ VF GG + K LK +
Sbjct: 65 DALLLDSPATQVLILAPTREIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQDKVRLK-K 123
Query: 166 CPQIVVGTP--GRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
C I VG+P GRI L L+ ++R FILDE DK+LE + + I+ P +K
Sbjct: 124 C-HIAVGSPDVGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSLPANK 182
Query: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY--IKLSEL------EK 275
Q++ SAT + + +M++P + ++ +L GL Q+Y + L EK
Sbjct: 183 QMLAVSATYPESLANALTMYMREPTFVRLNPTDP-SLIGLKQYYKIVNSHPLPHKTFEEK 241
Query: 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK 335
+ L +L + FNQ ++F SRA L ++L FP+ CI M+Q +RL K
Sbjct: 242 TQHLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECISGSMNQSQRLDAMAKLK 301
Query: 336 EGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395
+ + R+L++TDL RGID E+VN+VIN D+P +TY+HR+GRAGRFGT GL++T+
Sbjct: 302 QFHCRVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGTLGLSVTYCCRG 361
Query: 396 SDSDILNQVQARFEVDIKELPEQI 419
+ +++ ++ + + + LPE I
Sbjct: 362 EEENMMMKIAQKCNLQLLPLPEPI 385
>ZFIN|ZDB-GENE-030131-202 [details] [associations]
symbol:ddx20 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 20" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-202
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:BX664742 IPI:IPI00890438
Ensembl:ENSDART00000087037 Ensembl:ENSDART00000134226
Uniprot:F1R1C1
Length = 789
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 134/383 (34%), Positives = 204/383 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F LL +L + SGF+ PS +Q + IP G+D+I QAKSG GKT VF L
Sbjct: 56 FSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDS 115
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
LVL TRE+A QI + + ++ VF GG I K LK +C
Sbjct: 116 LILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLK-KC- 173
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQ 224
I +G+PGRI L L + ++R F+LDE DK+LE S + + I+ P +KQ
Sbjct: 174 HIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANKQ 233
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY--IKLSEL------EKN 276
++ SAT + + ++M++P + ++ L GL Q+Y + L EK
Sbjct: 234 MLALSATYPESLAQQLSRYMREPTFVRLNPTDPGLL-GLKQYYKIVPSHSLPHKVFEEKV 292
Query: 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE 336
+ L +L + FNQ ++F +RA L +L P++CI G+SQ++RL K+
Sbjct: 293 QSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQ 352
Query: 337 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396
R+L++TDL RGID E+VN+VIN D+P +TY+HR+GRAGRFGT G+A+T+
Sbjct: 353 YQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGE 412
Query: 397 DSDILNQVQARFEVDIKELPEQI 419
+ + + + + +D+ LP+ I
Sbjct: 413 EENKMMAIAQKCSLDLMHLPDPI 435
>UNIPROTKB|F1MAM8 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 GeneTree:ENSGT00530000062880 IPI:IPI00947925
RefSeq:NP_001178640.1 UniGene:Rn.137424 Ensembl:ENSRNOT00000068152
GeneID:84473 KEGG:rno:84473 NextBio:616964 ArrayExpress:F1MAM8
Uniprot:F1MAM8
Length = 824
Score = 566 (204.3 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 136/396 (34%), Positives = 208/396 (52%)
Query: 33 GEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAK 91
G + G V + + F LL +L + +GFE PS VQ + IP G+D+I QAK
Sbjct: 48 GPRTRTGDVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAK 107
Query: 92 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 151
SG GKT VF L L+L TRE+A QI + ++ VF G
Sbjct: 108 SGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG 167
Query: 152 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 211
G + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE +
Sbjct: 168 GTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 225
Query: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
+ I+ P KQ++ SAT + + ++M+DP + ++ +L GL Q+Y ++
Sbjct: 226 INWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDP-SLIGLKQYYQVVN 284
Query: 272 EL--------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323
EK + L +L + FNQ ++F SRA L +L FP+ CI M+
Sbjct: 285 SYPLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMN 344
Query: 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
Q +RL K+ + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGRFG
Sbjct: 345 QNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFG 404
Query: 384 TKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
T GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 405 TLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 440
>MGI|MGI:1858415 [details] [associations]
symbol:Ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IPI] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1858415 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0000122
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:CH466608 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11218 HOGENOM:HOG000112184 HOVERGEN:HBG051330
KO:K13131 OMA:VEDYEHY OrthoDB:EOG4SF95N EMBL:AJ250027 EMBL:AF220454
EMBL:BC125471 EMBL:BC137721 IPI:IPI00122400 RefSeq:NP_059093.3
UniGene:Mm.272826 ProteinModelPortal:Q9JJY4 SMR:Q9JJY4
IntAct:Q9JJY4 STRING:Q9JJY4 PhosphoSite:Q9JJY4 PaxDb:Q9JJY4
PRIDE:Q9JJY4 Ensembl:ENSMUST00000090680 GeneID:53975 KEGG:mmu:53975
GeneTree:ENSGT00530000062880 InParanoid:Q059Z6 NextBio:310865
Bgee:Q9JJY4 CleanEx:MM_DDX20 Genevestigator:Q9JJY4
GermOnline:ENSMUSG00000027905 Uniprot:Q9JJY4
Length = 825
Score = 566 (204.3 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 136/396 (34%), Positives = 208/396 (52%)
Query: 33 GEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAK 91
G + G V + + F LL +L + +GFE PS VQ + IP G+D+I QAK
Sbjct: 49 GPRTRTGDVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAK 108
Query: 92 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 151
SG GKT VF L L+L TRE+A QI + ++ VF G
Sbjct: 109 SGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG 168
Query: 152 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 211
G + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE +
Sbjct: 169 GTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 226
Query: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
+ I+ P KQ++ SAT + + ++M+DP + ++ +L GL Q+Y ++
Sbjct: 227 INWIYSSLPASKQMLAVSATYPEVLANALTRYMRDPTFVRLNPSDP-SLIGLKQYYQVVN 285
Query: 272 EL--------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323
EK + L +L + FNQ ++F SRA L +L FP+ CI M+
Sbjct: 286 SYPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMN 345
Query: 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
Q +RL K+ + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGRFG
Sbjct: 346 QNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFG 405
Query: 384 TKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
T GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 406 TLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 441
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 132/379 (34%), Positives = 203/379 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D + P +LRAI D G+E P+ +Q IP + G DV+ A++G GKTA F + L +
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ ALVL TRELA Q+ F R+ YL + V YGG + + L+
Sbjct: 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA- 133
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Q+VVGTPGR++ L L V +LDE D+ML ++ DV+ I TP KQV +
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEML-TMGFADDVERILSETPEYKQVAL 192
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL-HGLVQHYIKLSELEKNRKLNDLLDAL 286
FSAT+ IR + K++ DP E+ +AK + + Q YI+++ K L +L+
Sbjct: 193 FSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAENISQSYIQVAR--KMDALTRVLEVE 248
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
F +++FV++ E+ + L F + I + Q +R ++G+ ILVATD
Sbjct: 249 PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATD 308
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+D+ER++ V+NYD+P ++Y+HR+GR GR G G A+ FVS + +L ++
Sbjct: 309 VAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPR-ELHLLKAIEK 367
Query: 407 RFEVDIKE--LPEQIDTST 423
+ E LP D +T
Sbjct: 368 ATRQTLTEAQLPTVEDVNT 386
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 129/377 (34%), Positives = 204/377 (54%)
Query: 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL 102
++ F + + + ++G + +Q + IP + G D+I QAK+G GKT FVL
Sbjct: 2 VYLKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVL 61
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
L++ +P V AL++ TRELA QI E ++ DI V YGG ++ L
Sbjct: 62 PILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K IVV TPGR+L R + + L N+ +LDE D+ML D+++I TP
Sbjct: 122 KGNT-HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLY-FGFLYDIEDILDETPGS 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
KQ M+FSAT+ K+I+ + K++M +P I V E ++T+ + Q I+ ++ K L +
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSE-EVTVDTIEQRVIETTDRAKPDALRFV 238
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
+D VIF ++ RA++L L + +H + Q +R K F+E + L
Sbjct: 239 MDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
+ATD+ RG+D++ V V NYD+P+ ++Y+HR+GR GR G GLAITFV+ A D L
Sbjct: 299 IATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVA-AKDEKHLE 357
Query: 403 QVQARFEVDI-KELPEQ 418
+++ I +E+ EQ
Sbjct: 358 EIEKTLGAPIQREIIEQ 374
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 129/377 (34%), Positives = 204/377 (54%)
Query: 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL 102
++ F + + + ++G + +Q + IP + G D+I QAK+G GKT FVL
Sbjct: 2 VYLKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVL 61
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
L++ +P V AL++ TRELA QI E ++ DI V YGG ++ L
Sbjct: 62 PILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K IVV TPGR+L R + + L N+ +LDE D+ML D+++I TP
Sbjct: 122 KGNT-HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLY-FGFLYDIEDILDETPGS 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
KQ M+FSAT+ K+I+ + K++M +P I V E ++T+ + Q I+ ++ K L +
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSE-EVTVDTIEQRVIETTDRAKPDALRFV 238
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
+D VIF ++ RA++L L + +H + Q +R K F+E + L
Sbjct: 239 MDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
+ATD+ RG+D++ V V NYD+P+ ++Y+HR+GR GR G GLAITFV+ A D L
Sbjct: 299 IATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVA-AKDEKHLE 357
Query: 403 QVQARFEVDI-KELPEQ 418
+++ I +E+ EQ
Sbjct: 358 EIEKTLGAPIQREIIEQ 374
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 127/369 (34%), Positives = 204/369 (55%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L+ +LLR I G P Q I + + + ++SG GKTA F +S LQ +
Sbjct: 45 LREDLLRGIYAYGRPEPGAFQQRKILVVMKSNNAVVISQSGTGKTATFSISVLQCLDIQV 104
Query: 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ-IVV 171
+ AL+L TRELA QI Y+ +++ GG N+ +D+ K + Q +V
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVG--EDIRKLDYGQHVVA 161
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGR+ + R + L + ++ +LDE D+ML + + ++++ P QV++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQ 290
L EI + KFM DP+ I V + +LTL G+ Q ++ + E K L DL D L Q
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 279
Query: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
VIF + + L + + E NF +H M Q+ER + K F+ G R+L++TD+ R
Sbjct: 280 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 339
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ +V+++INYD+P++ + Y+HR+GR+GR+G KG+AI FV + D IL ++ +
Sbjct: 340 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYST 398
Query: 411 DIKELPEQI 419
I E+P +
Sbjct: 399 QIDEMPMNV 407
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 124/369 (33%), Positives = 210/369 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F F L LL+AI +S ++ P+E+Q + IP + DV+ +A++G GKTA F L LQQ
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 108 ---TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164
+P ++ ALVL TRELA Q+ F + + D+ + + YGGV+ K LK
Sbjct: 67 LISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFT-DVTIGIAYGGVSTKKQISELKV 125
Query: 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
I++ TPGR+L L R + +SL N+ + DE D+ML+ + + ++ +I + P KQ
Sbjct: 126 GV-DILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLD-MGFKEEIDQITQYLPKTKQ 183
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND-LL 283
++FSAT + +I + K + +P + +D++ K V+ + + ++ R+L L+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADD--VEQLVYGVDADRKRELTSFLI 241
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
+ ++ QV++F ++ A +L K + + S+ IH SQ R FKEG R L+
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
ATD+ RGIDI+ ++ VINY++P +A+ Y+HR+GR R G GLA++ VS + +L
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEW-LLTA 360
Query: 404 VQARFEVDI 412
++ ++ +
Sbjct: 361 IEELLDIQL 369
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 124/369 (33%), Positives = 210/369 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F F L LL+AI +S ++ P+E+Q + IP + DV+ +A++G GKTA F L LQQ
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 108 ---TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164
+P ++ ALVL TRELA Q+ F + + D+ + + YGGV+ K LK
Sbjct: 67 LISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFT-DVTIGIAYGGVSTKKQISELKV 125
Query: 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
I++ TPGR+L L R + +SL N+ + DE D+ML+ + + ++ +I + P KQ
Sbjct: 126 GV-DILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLD-MGFKEEIDQITQYLPKTKQ 183
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND-LL 283
++FSAT + +I + K + +P + +D++ K V+ + + ++ R+L L+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADD--VEQLVYGVDADRKRELTSFLI 241
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
+ ++ QV++F ++ A +L K + + S+ IH SQ R FKEG R L+
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403
ATD+ RGIDI+ ++ VINY++P +A+ Y+HR+GR R G GLA++ VS + +L
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEW-LLTA 360
Query: 404 VQARFEVDI 412
++ ++ +
Sbjct: 361 IEELLDIQL 369
>UNIPROTKB|B4DIJ6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
EMBL:AK295634 IPI:IPI00910878 SMR:B4DIJ6 STRING:B4DIJ6
Ensembl:ENST00000453105 Ensembl:ENST00000546533
Ensembl:ENST00000547092 Ensembl:ENST00000547978
Ensembl:ENST00000548205 Ensembl:ENST00000548413
Ensembl:ENST00000548818 UCSC:uc011dno.1 HOVERGEN:HBG102589
Uniprot:B4DIJ6
Length = 243
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 108/169 (63%), Positives = 133/169 (78%)
Query: 78 PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137
P L C ++S G + LS Q+ V+ LV+CHTRELA+QI E+ERF
Sbjct: 37 PSTALAFVTSCSSQSCSGPLSTVALSIRQK-------VSVLVMCHTRELAFQISKEYERF 89
Query: 138 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 197
S Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILD
Sbjct: 90 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 149
Query: 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 246
ECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQD
Sbjct: 150 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 198
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 133/361 (36%), Positives = 200/361 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LL+A+ D G+E PS +Q + IP I G DV+ A++G GKTA F L LQ+
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 108 TEPNPGQ------VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161
+ G V AL+L TRELA QI E + YL ++ V +GGV KI+ +
Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYL-NLHSMVVFGGV--KINPQI 124
Query: 162 LK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
+ + ++V TPGR+L L + + + FILDE D+ML+ + RD++++ P
Sbjct: 125 ARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLD-MGFIRDIKKLMTALP 183
Query: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280
D+Q ++FSAT S EIR + K + +P+EI VD E T + Q + + K L
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENS-TAEKVTQWLTAVDKKRKPAVLT 242
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
L+ ++ QV++F K+ A +L K L + IH SQ R FK+G+ +
Sbjct: 243 HLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVK 302
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 400
ILVATD+ RGIDI+ + V+N+D+P+ + Y+HR+GR R G G A++ V A + D+
Sbjct: 303 ILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVC-ADELDL 361
Query: 401 L 401
L
Sbjct: 362 L 362
>UNIPROTKB|E9PSX0 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00554119
Ensembl:ENSRNOT00000020984 ArrayExpress:E9PSX0 Uniprot:E9PSX0
Length = 826
Score = 557 (201.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 136/398 (34%), Positives = 209/398 (52%)
Query: 33 GEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAK 91
G + G V + + F LL +L + +GFE PS VQ + IP G+D+I QAK
Sbjct: 48 GPRTRTGDVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAK 107
Query: 92 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 151
SG GKT VF L L+L TRE+A QI + ++ VF G
Sbjct: 108 SGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG 167
Query: 152 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 211
G + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE +
Sbjct: 168 GTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 225
Query: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
+ I+ P KQ++ SAT + + ++M+DP + ++ +L GL Q+Y ++
Sbjct: 226 INWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDP-SLIGLKQYYQVVN 284
Query: 272 EL--------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI--HSG 321
EK + L +L + FNQ ++F SRA L +L FP+ CI +
Sbjct: 285 SYPLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNGN 344
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
M+Q +RL K+ + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGR
Sbjct: 345 MNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGR 404
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
FGT GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 405 FGTLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 442
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 136/385 (35%), Positives = 215/385 (55%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ---TE 109
L ELLRAI + G+ P+ VQ + IP + DV+ A++G GKTA F L LQ+ +
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 110 PNPGQ------VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P P Q + AL+L TRELA Q+ + YLP +K V +GGV+IK + L+
Sbjct: 77 P-PLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKPQINHLR 134
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
I+V TPGR+L L L+L V F+LDE D+ML+ + D++ I K+ P +
Sbjct: 135 RGV-DILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLD-MGFLPDIRRILKLLPESR 192
Query: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL-NDL 282
Q ++FSAT SKEI+ + K + P I V + T + H + + ++ R+L + +
Sbjct: 193 QNLLFSATFSKEIKELTDKLLHSPALIEV--ARRNTAAARITHVVHPVDRQRKRELLSFM 250
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
+ + ++ QV++F ++ A L++ L S IH SQ R+ FK+G R+L
Sbjct: 251 IGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVL 310
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
VATD+ RG+DI+++ VIN+++PD+A Y+HRVGR GR G+AI+ VS + +L
Sbjct: 311 VATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSG-DEVRLLR 369
Query: 403 QVQARFEVDIKELPEQIDTSTYMPS 427
++ + ++P+++ Y PS
Sbjct: 370 DIEKLLQ---SKMPQEVIPG-YEPS 390
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 136/385 (35%), Positives = 215/385 (55%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ---TE 109
L ELLRAI + G+ P+ VQ + IP + DV+ A++G GKTA F L LQ+ +
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 110 PNPGQ------VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P P Q + AL+L TRELA Q+ + YLP +K V +GGV+IK + L+
Sbjct: 77 P-PLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKPQINHLR 134
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
I+V TPGR+L L L+L V F+LDE D+ML+ + D++ I K+ P +
Sbjct: 135 RGV-DILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLD-MGFLPDIRRILKLLPESR 192
Query: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL-NDL 282
Q ++FSAT SKEI+ + K + P I V + T + H + + ++ R+L + +
Sbjct: 193 QNLLFSATFSKEIKELTDKLLHSPALIEV--ARRNTAAARITHVVHPVDRQRKRELLSFM 250
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
+ + ++ QV++F ++ A L++ L S IH SQ R+ FK+G R+L
Sbjct: 251 IGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVL 310
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402
VATD+ RG+DI+++ VIN+++PD+A Y+HRVGR GR G+AI+ VS + +L
Sbjct: 311 VATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSG-DEVRLLR 369
Query: 403 QVQARFEVDIKELPEQIDTSTYMPS 427
++ + ++P+++ Y PS
Sbjct: 370 DIEKLLQ---SKMPQEVIPG-YEPS 390
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 121/351 (34%), Positives = 196/351 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+DF L +L++AI GFE + +Q + IP + DVI QA++G GKTA F + +++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P + A+V+ TRELA Q+ E + KV YGG +I LK P
Sbjct: 65 INPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRAKVLPIYGGQDIGRQIRALKKN-P 122
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+L + + L NV ++DE D+ML ++ D++ I P + Q ++
Sbjct: 123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEML-NMGFIDDIESILSNVPSEHQTLL 181
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ I+ + ++FM +P + V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAK-EMTVSNIQQFYLEVQERKKFDTLTRLLDIQS 240
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL + L + + IH ++Q +R+ + FKEG +LVATD+
Sbjct: 241 PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV 300
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
RG+DI V V N+D+P ++Y+HR+GR GR G G+A+TF++ S
Sbjct: 301 AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS 351
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 119/348 (34%), Positives = 201/348 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
FR+ L LLRA+ + G+E P+ +Q I + G D++ QA++G GKT F L L +
Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67
Query: 108 -TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166
T Q+ LVL TRELA Q+ F ++ ++ + V YGG +++ + LK
Sbjct: 68 VTSQTTPQI--LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRG- 124
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
PQ++VGTPGR++ R L L+ ++ +LDE D+ML+ + D++ I + TP +Q+
Sbjct: 125 PQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWILEHTPPQRQLA 183
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT+ ++I+ V K +++ I + + T+ + Q ++++S+ K L +L+
Sbjct: 184 LFSATMPEQIKRVANKHLKNATNISIA-ASHTTVDSIEQRFVQVSQHNKLEALVRVLEVE 242
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
+ ++IFV++ + EL + L + S +H M+Q+ R + K G IL+ATD
Sbjct: 243 NTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATD 302
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394
+ RG+D+ER+ V+NYD+P + Y+HR+GR GR G G+AI FV+S
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTS 350
>UNIPROTKB|H0Y6G9 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y6G9 PRIDE:H0Y6G9
Ensembl:ENST00000455806 Bgee:H0Y6G9 Uniprot:H0Y6G9
Length = 138
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 102/137 (74%), Positives = 123/137 (89%)
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 223 KQVMMFSATLSKEIRPV 239
KQVMMFSATLSKEIRPV
Sbjct: 122 KQVMMFSATLSKEIRPV 138
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 122/347 (35%), Positives = 196/347 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F++ + EL A GF+ P+ +Q E IP + DVI A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
NP A+VL TRELAYQI +FE + ++ V GG+++ L + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDMVTQAVALSKK-P 165
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++V TPGR++ L K SLKN+++ I+DE D++L+ +D + +I K+ PH+++ +
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHERRTL 224
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++ ++ + + + P+ + V + T+ L+Q Y+ K+ L L++ L
Sbjct: 225 LFSATMTSKVEKLQRASLHQPVRVAVSSKFS-TVDTLIQRYLFFPFKHKDTYLVYLVNEL 283
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N ++IF ++V+ L LL F +I +H +SQ RL FK G + LVATD
Sbjct: 284 AGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD 343
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
+ RG+DI V++VINYD+P + Y+HRVGR R G G +I V+
Sbjct: 344 VAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>UNIPROTKB|F1MRW7 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:DAAA02007520 IPI:IPI00867090
UniGene:Bt.13425 Ensembl:ENSBTAT00000024914 Uniprot:F1MRW7
Length = 825
Score = 551 (199.0 bits), Expect = 7.1e-53, P = 7.1e-53
Identities = 137/398 (34%), Positives = 206/398 (51%)
Query: 32 NGEAAKKGYVGI-HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
+G + G V + + F LL +L + GFE PS VQ + IP G+D+I QA
Sbjct: 47 SGPRTRTGDVLLAEPADFESLLLSRPVLEGLRAVGFERPSPVQLKAIPLGRCGLDLIVQA 106
Query: 91 KSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 150
KSG GKT VF L L+L TRE+A QI + ++ VF
Sbjct: 107 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFI 166
Query: 151 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210
GG + K LK +C I VG+PGRI L L+ ++R FILDE DK+LE +
Sbjct: 167 GGTPLSQDKTRLK-KC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQE 224
Query: 211 DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI-- 268
+ I+ P KQ++ SAT + + K+M++P + ++ +L GL Q+Y
Sbjct: 225 QINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDP-SLIGLKQYYKIV 283
Query: 269 -------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
K+ E EK + L +L + FNQ ++F SRA L +L FP+ I
Sbjct: 284 NSYPLAHKIFE-EKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPAEYISGN 342
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
M Q RL K+ + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGR
Sbjct: 343 MDQNRRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDCETYMHRIGRAGR 402
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419
FGT GL +T+ + +++ ++ + +++ LP+ I
Sbjct: 403 FGTLGLTVTYCCRGEEENMMMKIAQKCTINLLPLPDPI 440
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 120/358 (33%), Positives = 200/358 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+DF L +L +AI GFE + +Q + IP + DVI QA++G GKTA F + +++
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P + A+V+ TRELA Q+ E + +V YGG +I LK P
Sbjct: 65 INPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRARVLPIYGGQDIGRQIRALKKN-P 122
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
I+VGTPGR+L + + L+ V +LDE D+ML ++ D++ I P + Q ++
Sbjct: 123 HIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEML-NMGFIEDIESILSNVPAEHQTLL 181
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ I+ + ++FM +P + V + ++T+ + Q Y+++ E +K L LLD
Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAK-EMTVSNIQQFYLEVHERKKFDTLTRLLDIQS 240
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL + L + + IH ++Q +R+ + FK+G +LVATD+
Sbjct: 241 PELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDV 300
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
RG+DI V V N+D+P ++Y+HR+GR GR G G+A+TF++ + D+L ++
Sbjct: 301 AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPR-EKDMLRAIE 357
>FB|FBgn0011802 [details] [associations]
symbol:Gem3 "Gemin3" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0022618 "ribonucleoprotein complex
assembly" evidence=IMP] [GO:0071254 "cytoplasmic U snRNP body"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014296 GO:GO:0007528 GO:GO:0006200 GO:GO:0003676
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0016779 HSSP:P10081 KO:K13131
GeneTree:ENSGT00530000062880 GO:GO:0071254 GO:GO:0022618
EMBL:AF160911 RefSeq:NP_524019.1 UniGene:Dm.921 SMR:Q9V3C4
IntAct:Q9V3C4 MINT:MINT-750334 STRING:Q9V3C4
EnsemblMetazoa:FBtr0076292 EnsemblMetazoa:FBtr0334100 GeneID:39195
KEGG:dme:Dmel_CG6539 UCSC:CG6539-RA CTD:39195 FlyBase:FBgn0011802
InParanoid:Q9V3C4 OMA:TPTKIQA OrthoDB:EOG44MW6X GenomeRNAi:39195
NextBio:812430 Uniprot:Q9V3C4
Length = 1028
Score = 553 (199.7 bits), Expect = 1.5e-52, P = 1.5e-52
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 31 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
A GE F + L LL + + F P+++Q IP A+ MD+I Q+
Sbjct: 10 AGGEERSSDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQS 69
Query: 91 KSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 150
KSG GKT ++V++ +Q PN Q A+++ TRELA Q+ F D K + F
Sbjct: 70 KSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFI 129
Query: 151 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210
GG ++ KD + ++++GTPGR+L L ++ + +R +LDE D++ ++ ++
Sbjct: 130 GGTDVA--KDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQH 187
Query: 211 DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 270
V ++ + P ++Q++ SAT + + K M PM I + A + L G+ Q +L
Sbjct: 188 TVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLL-GIRQFVYEL 246
Query: 271 SE----LEKNRK----LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322
+ +E+ R L + + L + Q +IF S RA L I M
Sbjct: 247 PQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAM 306
Query: 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
Q ERL ++G++ RILVATDL+ RG+D N+VIN D P TYLHR+GRAGRF
Sbjct: 307 EQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRF 366
Query: 383 GTKGLAITFVSSASDSDILNQVQARFEV--DIKELPEQ 418
G+KG+AITF++S +S ++ + + E P++
Sbjct: 367 GSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKE 404
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 134/381 (35%), Positives = 211/381 (55%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT---- 108
L L +A+ + G++ PS +Q + IP + G DV+ A++G GKTA F L L+
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGH 67
Query: 109 EPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQ 168
+ GQ ALVL TRELA Q+ E + YLP ++ AV +GGV I + L++
Sbjct: 68 KAKSGQTRALVLTPTRELAAQVGESVETYGKYLP-LRSAVVFGGVPINPQINKLRHGV-D 125
Query: 169 IVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
++V TPGR+L L + + + +LDE D+ML+ + RD+++I + P +Q +MF
Sbjct: 126 VLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLD-MGFIRDIKKILALLPAKRQNLMF 184
Query: 229 SATLSKEIRPVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYI-KLSELEKNRKLNDLLDAL 286
SAT S EIR + K + P+EI V A T V+ +I + + +K+ L L+
Sbjct: 185 SATFSDEIRELAKGLVNHPVEISVTPRNAAATT---VKQWICPVDKTQKSALLIQLIKQE 241
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
++ QV++F ++ A L K L++ + IH SQ R FK G R+LVATD
Sbjct: 242 NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS-----DSD-I 400
+ RG+DI+++ V+N+D+P+ + Y+HR+GR GR G G A++ VSS D + +
Sbjct: 302 IAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERL 361
Query: 401 LNQVQARFEVD----IKELPE 417
+N+V R EV+ + LPE
Sbjct: 362 INRVLERQEVEGFSPVHALPE 382
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 129/398 (32%), Positives = 222/398 (55%)
Query: 22 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81
+ PDS T+A AA++ + F+D + L A G+ P+++Q E IP A+
Sbjct: 5 EEPDS-PTEALQTAAEEE----ETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLAL 59
Query: 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 141
G D+I A++G GKT F L L P ++ ALVL TRELA+QI +FE + +
Sbjct: 60 QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI 119
Query: 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECD 200
++ AV GG++ + + L + P IV+ TPGR++ L K +L+ +++ ++DE D
Sbjct: 120 -GVQCAVIVGGID-SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEAD 177
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
++L ++D +V +I K+ P D++ +FSAT++K+++ + + +++P++ V + + T+
Sbjct: 178 RIL-NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TV 235
Query: 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS 320
L Q+Y+ + K+ L +L+ L N +IF + + LL F +I +H
Sbjct: 236 EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHG 295
Query: 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380
MSQ +RL FK + IL+ATD+ RG+DI V++V+N+D+P + Y+HRVGR
Sbjct: 296 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 355
Query: 381 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418
R G G AITFV+ D ++ +++ + P Q
Sbjct: 356 RAGRSGKAITFVTQY-DVELFQRIEHLIGKKLPVFPTQ 392
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 128/390 (32%), Positives = 218/390 (55%)
Query: 30 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQ 89
KA G A++ V + F+D + L A G++ P+++Q E IP A+ G D+I
Sbjct: 9 KAAGLEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGL 68
Query: 90 AKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149
A++G GKT F L LQ P ++ ALVL TRELA+QI +FE + + + AV
Sbjct: 69 AETGSGKTGAFALPILQALLDAPQRLFALVLTPTRELAFQISEQFEALGSSI-GVHSAVI 127
Query: 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDM 208
GG++ + + L + P I++ TPGR++ L K +L+ ++ ++DE D++L ++D
Sbjct: 128 VGGID-SMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRIL-NMDF 185
Query: 209 RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI 268
+V +I K+ P D++ +FSAT++K+++ + + +++P++ V + + T+ L Q+YI
Sbjct: 186 ETEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYI 244
Query: 269 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL 328
+ K+ L +L+ L N +IF + + LL F +I +H MSQ +RL
Sbjct: 245 FIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRL 304
Query: 329 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 388
FK + IL+ATD+ RG+DI V++VIN+D+P + Y+HRVGR R G G +
Sbjct: 305 GSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKS 364
Query: 389 ITFVSSASDSDILNQVQARFEVDIKELPEQ 418
ITFV+ D ++ +++ + P Q
Sbjct: 365 ITFVTQY-DVELFQRIEHLIGKKLPAFPMQ 393
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 123/374 (32%), Positives = 211/374 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P ++ ALVL TRELA+QI +FE + + ++ AV GG++ + + L + P
Sbjct: 88 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGID-SMSQSLALAKKP 145
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
IV+ TPGR++ L K +L+ +++ ++DE D++L ++D +V +I K+ P D++
Sbjct: 146 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 204
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K+++ + + +++P++ V + + T+ L Q+Y+ + K+ L +L+ L
Sbjct: 205 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYLFIPSKFKDTYLVYILNEL 263
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N +IF + + LL F +I +H MSQ +RL FK + IL+ATD
Sbjct: 264 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 323
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+DI V++V+N+D+P + Y+HRVGR R G G AITFV+ D ++ +++
Sbjct: 324 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY-DVELFQRIEH 382
Query: 407 RFEVDIKELPEQID 420
+ P Q D
Sbjct: 383 LIGKKLPVFPTQDD 396
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 123/374 (32%), Positives = 211/374 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P ++ ALVL TRELA+QI +FE + + ++ AV GG++ + + L + P
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGID-SMSQSLALAKKP 143
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I++ TPGR++ L K +L+ +++ ++DE D++L ++D +V +I K+ P D++
Sbjct: 144 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 202
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K+++ + + +++P++ V + + T+ L Q+YI + K+ L +L+ L
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N +IF + + LL F +I +H MSQ +RL FK + IL+ATD
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 321
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+DI V++V+N+D+P + Y+HRVGR R G G AITFV+ D ++ +++
Sbjct: 322 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY-DVELFQRIEH 380
Query: 407 RFEVDIKELPEQID 420
+ P Q D
Sbjct: 381 LIGKKLPGFPTQDD 394
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 123/346 (35%), Positives = 200/346 (57%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F++ L E+++AI GFE + +Q + IP ++ DVI QA++G GKTA F + +++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
V ALV+ TRELA Q+ E + + ++V YGG +I+ LK P
Sbjct: 64 VNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH-P 121
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
++VGTPGRI+ L L++V +LDE D+ML ++ D++ I P ++Q ++
Sbjct: 122 HVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEML-NMGFIEDIEAILSHVPAERQTLL 180
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSAT+ IR + ++FM +P + V + ++T+ + Q+Y+++ E +K L LLD
Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAK-EMTVPNIQQYYLEVHEKKKFDILTRLLDIQA 239
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
++F ++ R EL + L + + IH +SQ +RL+ + FKEG ILVATD+
Sbjct: 240 PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDV 299
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
RG+DI V V N+D+P ++Y+HR+GR GR G G+A+TFV+
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVT 345
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 133/406 (32%), Positives = 221/406 (54%)
Query: 25 DSVATK--ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL 82
+SV+++ A E G + F++ + +L A + G++ P+ +Q + IP A+
Sbjct: 23 ESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALE 82
Query: 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142
G DVI A++G GKTA F L LQ P + LVL TRELAYQI FE + +
Sbjct: 83 GRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTI- 141
Query: 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDK 201
++ AV GG+++ + + + + P I+V TPGR+L L K SL+N+++ +DE D+
Sbjct: 142 GVRCAVIVGGMDM-VAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADR 200
Query: 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 261
+L+ +D + +I ++ P + +FSAT+S ++ + + + +P+ + V + + T+
Sbjct: 201 LLD-MDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQ-TVS 258
Query: 262 GLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321
L YI + KN L LL+ +IF +V + +L F +I +H
Sbjct: 259 TLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQ 318
Query: 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
+SQ RL F+ ++ ILVATD+ RG+DI V++V N+D+P + TY+HRVGR R
Sbjct: 319 LSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTAR 378
Query: 382 FGTKGLAITFVSSASDSDILNQVQARFEVDI-KELPE-QIDTSTYM 425
G G+AI+FV+ D+ +V R E + K+LPE Q++ M
Sbjct: 379 AGKSGVAISFVTQY---DV--EVWLRIEHALSKKLPEYQVEKDEVM 419
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 123/374 (32%), Positives = 211/374 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L
Sbjct: 52 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 111
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P ++ ALVL TRELA+QI +FE + + ++ AV GG++ + + L + P
Sbjct: 112 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGID-SMSQSLALAKKP 169
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
IV+ TPGR++ L K +L+ +++ ++DE D++L ++D +V +I K+ P D++
Sbjct: 170 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 228
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K+++ + + +++P++ V + + T+ L Q+Y+ + K+ L +L+ L
Sbjct: 229 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYLFIPSKFKDTYLVYILNEL 287
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N +IF + + LL F +I +H MSQ +RL FK + IL+ATD
Sbjct: 288 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 347
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+DI V++V+N+D+P + Y+HRVGR R G G AITFV+ D ++ +++
Sbjct: 348 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY-DVELFQRIEH 406
Query: 407 RFEVDIKELPEQID 420
+ P Q D
Sbjct: 407 LIGKKLPVFPTQDD 420
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 122/377 (32%), Positives = 215/377 (57%)
Query: 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL 102
IH+S F++ + L A G++ P+++Q E IP A+ G DVI A++G GKT F +
Sbjct: 77 IHTS-FKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAV 135
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
LQ ++ LVL TRELA+QI +F+ + + +K AV GG+++ + + L+
Sbjct: 136 PVLQSLLACAQRLHTLVLTPTRELAFQIAEQFDALGSSI-GVKTAVIVGGIDM-MSQALV 193
Query: 163 KNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221
+ P +V+ TPGR++ + K +L+ +++ ++DE D++L ++D +V +I K+ P
Sbjct: 194 LAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRIL-NMDFESEVDKILKVIPR 252
Query: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281
D++ +FSAT++K+++ + + +QDP++ V + T+ L Q YI + K+ L
Sbjct: 253 DRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYA-TVDKLQQFYIFIPSKYKDCYLVS 311
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
+L+ L N ++F + + + LL +I +H MSQ +RL FK ++ +
Sbjct: 312 ILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSV 371
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
L+ATD+ RG+DI V+ VIN+D+P + Y+HRVGR R G G +ITFV+ D ++
Sbjct: 372 LLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQY-DVELF 430
Query: 402 NQVQARFEVDIKELPEQ 418
+++A + P Q
Sbjct: 431 QRIEALIGKKLPAFPTQ 447
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 122/372 (32%), Positives = 210/372 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
P ++ ALVL TRELA+QI +FE + + ++ AV GG++ + + L + P
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGID-SMSQSLALAKKP 143
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
IV+ TPGR++ L K +L+ +++ ++DE D++L ++D +V +I K+ P D++
Sbjct: 144 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 202
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K+++ + + +++P++ V + + T+ L Q+Y+ + K+ L +L+ L
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N +IF + + LL F +I +H MSQ +RL FK + IL+ATD
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 321
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+DI V++V+N+D+P + Y+HRVGR R G G AITFV+ D ++ +++
Sbjct: 322 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY-DVELFQRIEH 380
Query: 407 RFEVDIKELPEQ 418
+ P Q
Sbjct: 381 LIGKKLPVFPTQ 392
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/381 (33%), Positives = 211/381 (55%)
Query: 31 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
A G+ K HSS F+ L +L+ + + GFE P+++Q + IP A+LG D++ A
Sbjct: 245 AEGDKEKSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303
Query: 91 KSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVA 147
+G GKTA F++ L++ P +V L+LC TRELA Q CH DI V
Sbjct: 304 VTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQ-CHSVATKIASFTDIMVC 362
Query: 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLESL 206
+ GG+++K+ + L+ P IV+ TPGR + R+ +++N+ ++DE D+MLE
Sbjct: 363 LCIGGLSLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED- 420
Query: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
++ EI + P +Q M+FSAT++ ++ + + + P+ ++VD++ K T L Q
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK-KTTAKLLTQE 479
Query: 267 YIKLS---ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323
++++ EL + L L L + +IF +S + A ++ + + + IH +S
Sbjct: 480 FVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLS 539
Query: 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
QE+R+ + F++G L+ATD+ RGIDI+ + +VINY+ P + + YLHRVGR R G
Sbjct: 540 QEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAG 599
Query: 384 TKGLAITFVSSASDSDILNQV 404
G AIT ++ D +L V
Sbjct: 600 RSGRAIT-LAGEGDRKVLKGV 619
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 120/359 (33%), Positives = 210/359 (58%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
++D L L +A + ++ PS++Q E IP A+ G DVI A++G GKT F L L
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHA 122
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
NP + ALVL TRELA+QI +FE + + IK V GG+++ + + L + P
Sbjct: 123 LLENPQRYFALVLTPTRELAFQIGEQFEALGSGI-GIKCCVVVGGMDM-VAQGLQLAKKP 180
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
I++ TPGR++ L K +LK +++ ++DE D++L ++D ++ +I K+ P +++
Sbjct: 181 HIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRIL-NMDFEVELDKILKVLPRERRTF 239
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K+++ + + ++DP+++ V ++ + T+ L Q Y+ + K+ L +L+ L
Sbjct: 240 LFSATMTKKVKKLQRASLKDPVKVEVSNKYQ-TVEQLQQSYLFIPVKYKDVYLVHILNEL 298
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
N +IF + + + +L +I +H MSQ +RL FK N+ IL++TD
Sbjct: 299 AGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTD 358
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
+ RG+DI V++V+N+D+P + Y+HRVGR R G G AIT VS D ++ +++
Sbjct: 359 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQY-DIELYQRIE 416
>UNIPROTKB|H0Y4V8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y4V8 PRIDE:H0Y4V8
Ensembl:ENST00000427927 Bgee:H0Y4V8 Uniprot:H0Y4V8
Length = 136
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 100/135 (74%), Positives = 121/135 (89%)
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 223 KQVMMFSATLSKEIR 237
KQVMMFSATLSKEIR
Sbjct: 122 KQVMMFSATLSKEIR 136
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 124/351 (35%), Positives = 187/351 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F F PE+LRAI D G++ + +Q + IP G DV+ A++G GKTA F L LQ+
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 108 TEPNPGQVT-----ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
NP + L+L TRELA Q+ E +S YL + V YGGV ++ L
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYL-NFSVLTIYGGVKVETQAQKL 121
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K I+V TPGR+L +LSL +V +LDE D+ML+ + D+Q+I +
Sbjct: 122 KRGA-DIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLD-MGFSADIQKILQAVNKK 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
+Q ++FSAT S ++ + + M P I D + T + Q + + K L++L
Sbjct: 180 RQNLLFSATFSSAVKKLANEMMIKPQVISADKQ-NTTADTVSQVVYPVEQRRKRELLSEL 238
Query: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342
+ ++ QV++F + A L K L PS +H +Q R + F G R+L
Sbjct: 239 IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVL 298
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
VAT++ RG+DI + V+N+D+P A+ Y+HR+GR GR G G+AI+FVS
Sbjct: 299 VATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVS 349
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 127/382 (33%), Positives = 202/382 (52%)
Query: 34 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSG 93
E K + F + + L A G+ PS++Q +P A+ G DVI A++G
Sbjct: 32 EIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETG 91
Query: 94 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 153
GKT F + LQ +P LVL TRELA+QI +FE + + I AV GGV
Sbjct: 92 SGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLI-AAVIVGGV 150
Query: 154 NIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDV 212
++ L P I+V TPGR++ L K +LK ++ I+DE D++L ++D ++
Sbjct: 151 DMAAQAMALARR-PHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRIL-NMDFEVEL 208
Query: 213 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 272
+I K+ P +++ +FSAT++K++ + + ++DP + V K T+ L QHYI +
Sbjct: 209 DKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYK-TVDNLKQHYIFVPN 267
Query: 273 LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK 332
K L LL+ N ++F + + ++ +L + ++ +H MSQE+RL
Sbjct: 268 KYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLN 327
Query: 333 GFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
FK + ILV TD+ RG+DI V++VINYDMP + Y+HRVGR R G G+AIT V
Sbjct: 328 KFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVV 387
Query: 393 SSASDSDILNQVQARFEVDIKE 414
+ D + +++A + E
Sbjct: 388 TQY-DVEAYQKIEANLGKKLDE 408
>UNIPROTKB|F6QYI9 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662801
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:BX248516 HGNC:HGNC:13917 ChiTaRS:DDX39B
IPI:IPI00641325 SMR:F6QYI9 Ensembl:ENST00000417136
Ensembl:ENST00000449757 Uniprot:F6QYI9
Length = 187
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 106/147 (72%), Positives = 123/147 (83%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 39 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 98
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 99 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 158
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLK 163
FS Y+P++KVAVF+GG++IK +++LK
Sbjct: 159 FSKYMPNVKVAVFFGGLSIKKDEEVLK 185
>UNIPROTKB|F6V772 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:CR753892 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:BX001040 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 IPI:IPI00640787 SMR:F6V772 Ensembl:ENST00000411415
Ensembl:ENST00000439691 Ensembl:ENST00000441479
Ensembl:ENST00000442537 Ensembl:ENST00000445783 Uniprot:F6V772
Length = 187
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 106/147 (72%), Positives = 123/147 (83%)
Query: 25 DSVATKANGEAAK-------KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
D V T A G+ A+ KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHEC
Sbjct: 39 DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 98
Query: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136
IPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ER
Sbjct: 99 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 158
Query: 137 FSTYLPDIKVAVFYGGVNIKIHKDLLK 163
FS Y+P++KVAVF+GG++IK +++LK
Sbjct: 159 FSKYMPNVKVAVFFGGLSIKKDEEVLK 185
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 125/359 (34%), Positives = 193/359 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F ++ L E+ RA+ G+EHP+EVQ E IP A+ D++ ++++G GKTA F + +
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA Q+ + + IK A YG K LK +
Sbjct: 66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQKT- 123
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+L LSL+ +++ ++DE D+ML ++ V+ I P + M+
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEML-NMGFIDQVEAIIDELPTKRMTML 182
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSATL +++ + + +M P I + A +T + ++ E EK L D+ +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIK-AAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
+ +IF ++ + + L N+P IH GM QE+R F++G R LVATD+
Sbjct: 242 PDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDV 301
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
RGIDI+ + VINYD+P ++Y+HR GR GR G G AITF++ D L +++A
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDR-FLEEIEA 359
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 125/359 (34%), Positives = 193/359 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F ++ L E+ RA+ G+EHP+EVQ E IP A+ D++ ++++G GKTA F + +
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
E + ALVL TRELA Q+ + + IK A YG K LK +
Sbjct: 66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQKT- 123
Query: 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
IVVGTPGR+L LSL+ +++ ++DE D+ML ++ V+ I P + M+
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEML-NMGFIDQVEAIIDELPTKRMTML 182
Query: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD 287
FSATL +++ + + +M P I + A +T + ++ E EK L D+ +
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIK-AAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241
Query: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347
+ +IF ++ + + L N+P IH GM QE+R F++G R LVATD+
Sbjct: 242 PDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDV 301
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
RGIDI+ + VINYD+P ++Y+HR GR GR G G AITF++ D L +++A
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDR-FLEEIEA 359
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 125/380 (32%), Positives = 206/380 (54%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D + E+L +I + G++ P+E+Q E +P A L D+I +++G GKTA F++ LQ
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ N ALV+ TREL QI F+ L I + YGGV+I + + L + P
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLL-INICTIYGGVDI-VTQSLNLAKKP 275
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++V TPGRIL L K +LKN+++ + DE DK+L S D + ++ + P ++
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLL-SQDFESSINKLLLILPPNRITF 334
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K + + K +++P+++ V ++ T+ L++ YI L K L+ L
Sbjct: 335 LFSATMTKNVAKLKKACLKNPVKVEVSNKYS-TVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
++IF + + A +LN SIC+H ++Q +RL+ FK IL++T
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQ 453
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN-QVQ 405
+ RG+D++ + IVIN+D+ S Y+HRVGR R G G +ITFV+ + L + Q
Sbjct: 454 VGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQ 512
Query: 406 ARFEVD-IKELPEQIDTSTY 424
++D +L E D Y
Sbjct: 513 LNKKIDKFTDLDEN-DVLLY 531
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 125/380 (32%), Positives = 206/380 (54%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D + E+L +I + G++ P+E+Q E +P A L D+I +++G GKTA F++ LQ
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+ N ALV+ TREL QI F+ L I + YGGV+I + + L + P
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLL-INICTIYGGVDI-VTQSLNLAKKP 275
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++V TPGRIL L K +LKN+++ + DE DK+L S D + ++ + P ++
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLL-SQDFESSINKLLLILPPNRITF 334
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT++K + + K +++P+++ V ++ T+ L++ YI L K L+ L
Sbjct: 335 LFSATMTKNVAKLKKACLKNPVKVEVSNKYS-TVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
++IF + + A +LN SIC+H ++Q +RL+ FK IL++T
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQ 453
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN-QVQ 405
+ RG+D++ + IVIN+D+ S Y+HRVGR R G G +ITFV+ + L + Q
Sbjct: 454 VGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQ 512
Query: 406 ARFEVD-IKELPEQIDTSTY 424
++D +L E D Y
Sbjct: 513 LNKKIDKFTDLDEN-DVLLY 531
>UNIPROTKB|Q9NUU7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:AK001988 EMBL:AK223262
EMBL:AL832970 EMBL:CH471241 EMBL:BC005162 EMBL:BC006544
EMBL:BC137496 EMBL:BC137497 IPI:IPI00019918 RefSeq:NP_060802.1
UniGene:Hs.656037 ProteinModelPortal:Q9NUU7 SMR:Q9NUU7
IntAct:Q9NUU7 MINT:MINT-1450935 STRING:Q9NUU7 PhosphoSite:Q9NUU7
DMDM:73919226 PaxDb:Q9NUU7 PeptideAtlas:Q9NUU7 PRIDE:Q9NUU7
DNASU:55308 Ensembl:ENST00000302243 GeneID:55308 KEGG:hsa:55308
UCSC:uc002eyv.3 GeneCards:GC16P070380 H-InvDB:HIX0038837
HGNC:HGNC:25628 HPA:HPA045252 neXtProt:NX_Q9NUU7
PharmGKB:PA134894996 InParanoid:Q9NUU7 PhylomeDB:Q9NUU7
GenomeRNAi:55308 NextBio:59538 ArrayExpress:Q9NUU7 Bgee:Q9NUU7
CleanEx:HS_DDX19A Genevestigator:Q9NUU7 GermOnline:ENSG00000168872
Uniprot:Q9NUU7
Length = 478
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 137/383 (35%), Positives = 214/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP+ L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 153 SRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ S EK + L +L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>UNIPROTKB|H3BQK0 [details] [associations]
symbol:DDX19B "HCG1998531, isoform CRA_g" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:CH471241 EMBL:AC012184 HGNC:HGNC:2742
ChiTaRS:DDX19B SMR:H3BQK0 Ensembl:ENST00000563206 Uniprot:H3BQK0
Length = 484
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 138/383 (36%), Positives = 213/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 99 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 158
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 159 SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE 216
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 217 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ S EK + L +L
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLY 333
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 334 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 388
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 389 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 448
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 449 DSKHSMNILNRIQEHFNKKIERL 471
>UNIPROTKB|Q9UMR2 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0004386
GO:GO:0006406 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
OrthoDB:EOG46MBJK EMBL:CH471241 EMBL:AJ237946 EMBL:AF353720
EMBL:AL136639 EMBL:CR457215 EMBL:CR533509 EMBL:AK027378
EMBL:AK301938 EMBL:AK302107 EMBL:AK316346 EMBL:AC012184
EMBL:BC003626 EMBL:BC010008 IPI:IPI00008943 IPI:IPI00027599
IPI:IPI00556368 IPI:IPI00939593 RefSeq:NP_001014449.1
RefSeq:NP_001014451.1 RefSeq:NP_001244101.1 RefSeq:NP_001244102.1
RefSeq:NP_001244103.1 RefSeq:NP_009173.1 UniGene:Hs.221761 PDB:3EWS
PDB:3FHC PDB:3FHT PDB:3FMO PDB:3FMP PDB:3G0H PDBsum:3EWS
PDBsum:3FHC PDBsum:3FHT PDBsum:3FMO PDBsum:3FMP PDBsum:3G0H
ProteinModelPortal:Q9UMR2 SMR:Q9UMR2 DIP:DIP-48486N IntAct:Q9UMR2
MINT:MINT-1387516 STRING:Q9UMR2 PhosphoSite:Q9UMR2 DMDM:10719979
PaxDb:Q9UMR2 PRIDE:Q9UMR2 DNASU:11269 Ensembl:ENST00000288071
Ensembl:ENST00000355992 Ensembl:ENST00000393657
Ensembl:ENST00000451014 Ensembl:ENST00000563392
Ensembl:ENST00000568625 GeneID:11269 KEGG:hsa:11269 UCSC:uc002eyo.3
UCSC:uc002eyp.3 CTD:11269 GeneCards:GC16P070328 HGNC:HGNC:2742
HPA:CAB037284 MIM:605812 neXtProt:NX_Q9UMR2 PharmGKB:PA27208
InParanoid:Q9UMR2 OMA:HETIFEV PhylomeDB:Q9UMR2 ChiTaRS:DDX19B
EvolutionaryTrace:Q9UMR2 GenomeRNAi:11269 NextBio:42879
ArrayExpress:Q9UMR2 Bgee:Q9UMR2 CleanEx:HS_DDX19B
Genevestigator:Q9UMR2 GermOnline:ENSG00000157349 Uniprot:Q9UMR2
Length = 479
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 138/383 (36%), Positives = 213/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 154 SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE 211
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 212 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ S EK + L +L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLY 328
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 329 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 383
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 444 DSKHSMNILNRIQEHFNKKIERL 466
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 127/376 (33%), Positives = 199/376 (52%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+ FR+ L P L+ G P+ VQ CIP + G D + AK+G GKTA FVL L
Sbjct: 2 AAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 61
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q +P + LVL TRELAYQI +F L +K V GG+++ + + L +
Sbjct: 62 QVLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCVVVGGLDM-VAQALELSR 119
Query: 166 CPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHD 222
P +V+ TPGR+ R + SLK ++ +LDE D++LE D D++ I + P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
+Q ++FSATL+ + + M P E + T+ L Q Y+ + E K+ L L
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVR-TVDELDQRYLLVPEAVKDAYLVHL 238
Query: 283 LDAL-DFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
+ D ++ ++IF K+ LN +L + +FPS+ +HS M Q +R FK
Sbjct: 239 IQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 298
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
+IL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G G++IT V+ D
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY-DI 357
Query: 399 DILNQVQARFEVDIKE 414
+++ ++ ++ ++E
Sbjct: 358 HLVHAIEEEIKLKLQE 373
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 127/376 (33%), Positives = 199/376 (52%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+ FR+ L P L+ G P+ VQ CIP + G D + AK+G GKTA FVL L
Sbjct: 5 AAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 64
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q +P + LVL TRELAYQI +F L +K V GG+++ + + L +
Sbjct: 65 QVLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCVVVGGLDM-VAQALELSR 122
Query: 166 CPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHD 222
P +V+ TPGR+ R + SLK ++ +LDE D++LE D D++ I + P
Sbjct: 123 KPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR 182
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
+Q ++FSATL+ + + M P E + T+ L Q Y+ + E K+ L L
Sbjct: 183 RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVR-TVDELDQRYLLVPEAVKDAYLVHL 241
Query: 283 LDAL-DFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
+ D ++ ++IF K+ LN +L + +FPS+ +HS M Q +R FK
Sbjct: 242 IQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 301
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
+IL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G G++IT V+ D
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY-DI 360
Query: 399 DILNQVQARFEVDIKE 414
+++ ++ ++ ++E
Sbjct: 361 HLVHAIEEEIKLKLQE 376
>UNIPROTKB|Q5ZMC1 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K01529 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:11269
EMBL:AADN02040672 UniGene:Gga.7753 EMBL:AJ719463 IPI:IPI00571485
RefSeq:NP_001006568.1 SMR:Q5ZMC1 Ensembl:ENSGALT00000039619
GeneID:426504 KEGG:gga:426504 InParanoid:Q5ZMC1 NextBio:20828056
Uniprot:Q5ZMC1
Length = 479
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 131/378 (34%), Positives = 204/378 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 94 FEELHLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 154 SRVEPGNKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE 211
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P D Q
Sbjct: 212 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRDCQ 269
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ S EK R L ++
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNSRDEKFRALCNIY 328
Query: 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343
A+ Q ++F + A L L + + M E+R + F+EG +++LV
Sbjct: 329 GAITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFVSSASD 397
T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLAI V S
Sbjct: 389 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKHS 448
Query: 398 SDILNQVQARFEVDIKEL 415
+ILN++Q F I +L
Sbjct: 449 MNILNRIQEHFSKKINKL 466
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 125/360 (34%), Positives = 198/360 (55%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
S F+ F L ++ + G++ P+ +Q ECIP I G D++ A++G GKTA F L +
Sbjct: 2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPII 61
Query: 106 QQTEPNPGQVTA-----LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160
+ N + A L+L TRELA QI + +S L +K V YGGV + D
Sbjct: 62 NKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGL-GLKTKVVYGGVGRQAQVD 120
Query: 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
++ I+V TPGR+L L D++ K + F+LDE D ML+ + +DVQ I P
Sbjct: 121 SIELGL-DILVATPGRLLDLIETGDINFKALEVFVLDEADTMLD-MGFFKDVQSIISKLP 178
Query: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280
+Q ++FSAT+ EI + + + DP +I + E +T+ + Q L + K L
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQITAET-VTIDLVNQSVYHLDKSNKVPLLF 237
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
++L D+ +V+IF K+ A + K L + + + +HSG +Q R + FK+ R
Sbjct: 238 NILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLR 297
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 400
+LVATD+ RGID++ + +VINY++P+ Y+HR+GR R G G+AI+F A ++DI
Sbjct: 298 VLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISF---AVENDI 354
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 128/377 (33%), Positives = 200/377 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F L L++ G P+ VQ +CIP + G D + AK+G GKTA FVL LQ+
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
+P V LVL TRELAYQI +F L +K + GG+++ + + L ++ P
Sbjct: 64 LSEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM-VTQGLELSKKP 121
Query: 168 QIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHDKQ 224
+VV TPGR+ R D ++L ++ I+DE D++LE D +D++ I P +Q
Sbjct: 122 HVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKRQ 181
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL-TLHGLVQHYIKLSELEKNRKLNDLL 283
++FSATL+ ++ + M P + + ++ + T+ L Q +I E K+ L L+
Sbjct: 182 TLLFSATLTDTLQQLQSIAMNRPF--FWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLI 239
Query: 284 ----DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 339
D D ++IF + L +L E NFP+I +HS M Q +R FK
Sbjct: 240 QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVF 299
Query: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 399
+IL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G G++IT V+ D
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQY-DIH 358
Query: 400 ILNQVQARFEVDIKELP 416
++N ++ + + +KE P
Sbjct: 359 LINAIEEQNQTKLKEFP 375
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 118/359 (32%), Positives = 206/359 (57%)
Query: 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS 103
H+S F+ L +L+ I + F P+ +Q IP A+LG D++ A++G GKT +++
Sbjct: 129 HTS-FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIP 187
Query: 104 TLQQTEPNPGQVT-ALVLCHTRELAYQICHEF-ERFSTYLPDIKVAVFYGGVNIKIHKDL 161
+++ P T ++L TRELA Q+ +EF ++ S ++ ++ + + GG+N++ ++
Sbjct: 188 IIERLLYKPSTSTKVIILTPTRELALQV-YEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQ 246
Query: 162 LKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
LK P IV+ TPGR++ R+ S+++++ ++DE D+MLE + ++ EI + P
Sbjct: 247 LKTR-PDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEE-GFQDELTEILSLIP 304
Query: 221 -HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE--KNR 277
H +Q ++FSAT++ I+ + + +Q P+ I +D K L+Q ++++ + + K
Sbjct: 305 KHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPP-KSVASKLLQQFVRIRKRDQLKPA 363
Query: 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L LL + ++VV+FV A L +L +H ++QE+RL K FK
Sbjct: 364 LLYQLLKGVS-SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSL 422
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396
+L+ TDL RG+DI ++ +VINYDMP + + YLHRVGR R G G +ITFV +S
Sbjct: 423 EVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESS 481
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 118/359 (32%), Positives = 206/359 (57%)
Query: 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS 103
H+S F+ L +L+ I + F P+ +Q IP A+LG D++ A++G GKT +++
Sbjct: 129 HTS-FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIP 187
Query: 104 TLQQTEPNPGQVT-ALVLCHTRELAYQICHEF-ERFSTYLPDIKVAVFYGGVNIKIHKDL 161
+++ P T ++L TRELA Q+ +EF ++ S ++ ++ + + GG+N++ ++
Sbjct: 188 IIERLLYKPSTSTKVIILTPTRELALQV-YEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQ 246
Query: 162 LKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
LK P IV+ TPGR++ R+ S+++++ ++DE D+MLE + ++ EI + P
Sbjct: 247 LKTR-PDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEE-GFQDELTEILSLIP 304
Query: 221 -HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE--KNR 277
H +Q ++FSAT++ I+ + + +Q P+ I +D K L+Q ++++ + + K
Sbjct: 305 KHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPP-KSVASKLLQQFVRIRKRDQLKPA 363
Query: 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L LL + ++VV+FV A L +L +H ++QE+RL K FK
Sbjct: 364 LLYQLLKGVS-SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSL 422
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396
+L+ TDL RG+DI ++ +VINYDMP + + YLHRVGR R G G +ITFV +S
Sbjct: 423 EVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESS 481
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 115/340 (33%), Positives = 185/340 (54%)
Query: 61 IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ------TEPNPGQ 114
+ + G+ P+ VQ IP + G DV+ A +G GKTA F L LQ+ + + G
Sbjct: 24 LTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGV 83
Query: 115 VTALVLCHTRELAYQICHEFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGT 173
V LVL TRELA Q+ F ++++ +K+ +GGV++ + L+ ++V T
Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGA-DVLVAT 142
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGR+L L L L V F+LDE D+ML SL +++++ P KQ ++FSAT
Sbjct: 143 PGRLLDLLASNALKLTQVSAFVLDEADRML-SLGFTEELEQVLAALPRQKQTLLFSATFP 201
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVI 293
+E+R + K + P+E ++ E + T+ Q I ++ +K L L+ ++Q +I
Sbjct: 202 EEVRALTTKLLHQPLEYHLQSEQESTIE---QRVITVNREQKTALLAHLIKQHQWSQALI 258
Query: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353
FV + + L + L + + H +Q R GFK G +L+ATD+ RGID
Sbjct: 259 FVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGID 318
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
I+++ +VIN+D+P S Y+HR+GR+GR G GLA+T +S
Sbjct: 319 IDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLIS 358
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 115/340 (33%), Positives = 185/340 (54%)
Query: 61 IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ------TEPNPGQ 114
+ + G+ P+ VQ IP + G DV+ A +G GKTA F L LQ+ + + G
Sbjct: 24 LTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGV 83
Query: 115 VTALVLCHTRELAYQICHEFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGT 173
V LVL TRELA Q+ F ++++ +K+ +GGV++ + L+ ++V T
Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGA-DVLVAT 142
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGR+L L L L V F+LDE D+ML SL +++++ P KQ ++FSAT
Sbjct: 143 PGRLLDLLASNALKLTQVSAFVLDEADRML-SLGFTEELEQVLAALPRQKQTLLFSATFP 201
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVI 293
+E+R + K + P+E ++ E + T+ Q I ++ +K L L+ ++Q +I
Sbjct: 202 EEVRALTTKLLHQPLEYHLQSEQESTIE---QRVITVNREQKTALLAHLIKQHQWSQALI 258
Query: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353
FV + + L + L + + H +Q R GFK G +L+ATD+ RGID
Sbjct: 259 FVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGID 318
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
I+++ +VIN+D+P S Y+HR+GR+GR G GLA+T +S
Sbjct: 319 IDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLIS 358
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 130/354 (36%), Positives = 191/354 (53%)
Query: 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ 106
GF L +L+AI + G+ PS +Q + IP + G DV+ A++G GKTA F L L+
Sbjct: 2 GFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 107 QTEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
P QV AL+L TRELA QI + +LP +K AV +GGV KI+ +
Sbjct: 62 LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGV--KINPQM- 117
Query: 163 KNECP--QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
+ C I+V TPGR++ L + + +LDE D+ML+ + RD+ +I K+ P
Sbjct: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLD-MGFIRDIHKILKLLP 176
Query: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280
+Q ++FSAT S EIR + K + +P+EI V A T + Q +K L
Sbjct: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSP-ANSTARTVEQCIYPADVKKKPDMLV 235
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
L+ ++ QV++F+++ A L L E + IH SQ R FK G R
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394
ILVATD+ RGIDI ++ V+N+++P A+ Y+HR+GR GR G G AI+ VS+
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSA 349
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 130/354 (36%), Positives = 191/354 (53%)
Query: 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ 106
GF L +L+AI + G+ PS +Q + IP + G DV+ A++G GKTA F L L+
Sbjct: 2 GFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 107 QTEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
P QV AL+L TRELA QI + +LP +K AV +GGV KI+ +
Sbjct: 62 LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGV--KINPQM- 117
Query: 163 KNECP--QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
+ C I+V TPGR++ L + + +LDE D+ML+ + RD+ +I K+ P
Sbjct: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLD-MGFIRDIHKILKLLP 176
Query: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280
+Q ++FSAT S EIR + K + +P+EI V A T + Q +K L
Sbjct: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSP-ANSTARTVEQCIYPADVKKKPDMLV 235
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
L+ ++ QV++F+++ A L L E + IH SQ R FK G R
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394
ILVATD+ RGIDI ++ V+N+++P A+ Y+HR+GR GR G G AI+ VS+
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSA 349
>UNIPROTKB|B4DRZ7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
UniGene:Hs.656037 HGNC:HGNC:25628 EMBL:AC012184 EMBL:AK299504
IPI:IPI01009735 SMR:B4DRZ7 STRING:B4DRZ7 Ensembl:ENST00000443119
UCSC:uc002eys.3 Uniprot:B4DRZ7
Length = 388
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 137/381 (35%), Positives = 214/381 (56%)
Query: 51 FLL-KPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQ 107
FL+ KP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L +
Sbjct: 5 FLIRKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSR 64
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
EP+ L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 65 VEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE-- 120
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q++
Sbjct: 121 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 180
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLLDA 285
+FSAT + +K + DP I + E + TL + Q+Y+ S EK + L +L A
Sbjct: 181 LFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLYGA 239
Query: 286 LDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGNKR 340
+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG ++
Sbjct: 240 ITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGKEK 294
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFVSS 394
+LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V S
Sbjct: 295 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 354
Query: 395 ASDSDILNQVQARFEVDIKEL 415
+ILN++Q F I+ L
Sbjct: 355 KHSMNILNRIQEHFNKKIERL 375
>UNIPROTKB|I3L352 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:25628 EMBL:AC012184
Ensembl:ENST00000575878 Uniprot:I3L352
Length = 396
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 137/381 (35%), Positives = 214/381 (56%)
Query: 51 FLL-KPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQ 107
FL+ KP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L +
Sbjct: 13 FLIRKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSR 72
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167
EP+ L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 73 VEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE-- 128
Query: 168 QIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q++
Sbjct: 129 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 188
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLLDA 285
+FSAT + +K + DP I + E + TL + Q+Y+ S EK + L +L A
Sbjct: 189 LFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLYGA 247
Query: 286 LDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGNKR 340
+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG ++
Sbjct: 248 ITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGKEK 302
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFVSS 394
+LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V S
Sbjct: 303 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 362
Query: 395 ASDSDILNQVQARFEVDIKEL 415
+ILN++Q F I+ L
Sbjct: 363 KHSMNILNRIQEHFNKKIERL 383
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 119/357 (33%), Positives = 198/357 (55%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L LL AI + G++ ++VQ + IP A++G D++ A++G GKTA F L L+Q P
Sbjct: 8 LSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKP 67
Query: 113 GQ---VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQI 169
+ ALV+ TRELA Q+C +++S +LP +K YGG N+ + ++ I
Sbjct: 68 ADKPLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGVEQGV-DI 125
Query: 170 VVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229
+V TPGR+ + +L L +V ++DE D+ML+ L RD++++ ++ Q M+FS
Sbjct: 126 LVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLD-LGFVRDIEKVKRLIAPVHQTMLFS 184
Query: 230 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFN 289
AT S ++ + K + P + V + T + Q ++ + K L++L+ ++
Sbjct: 185 ATYSDAVKQLSHKMLNQPQWVNVAENT--TASTVEQLVYRVDKRRKAELLSELVGRNNWR 242
Query: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349
QV++F + A L + L + H +Q R FK G R+LVATD+
Sbjct: 243 QVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAA 302
Query: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
RG+DI+ + +VIN ++P A+ Y+HR+GR GR G G AI+FVS A D ++L +++A
Sbjct: 303 RGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADD-EMLAEIEA 358
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 119/357 (33%), Positives = 198/357 (55%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 112
L LL AI + G++ ++VQ + IP A++G D++ A++G GKTA F L L+Q P
Sbjct: 8 LSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKP 67
Query: 113 GQ---VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQI 169
+ ALV+ TRELA Q+C +++S +LP +K YGG N+ + ++ I
Sbjct: 68 ADKPLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGVEQGV-DI 125
Query: 170 VVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229
+V TPGR+ + +L L +V ++DE D+ML+ L RD++++ ++ Q M+FS
Sbjct: 126 LVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLD-LGFVRDIEKVKRLIAPVHQTMLFS 184
Query: 230 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFN 289
AT S ++ + K + P + V + T + Q ++ + K L++L+ ++
Sbjct: 185 ATYSDAVKQLSHKMLNQPQWVNVAENT--TASTVEQLVYRVDKRRKAELLSELVGRNNWR 242
Query: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349
QV++F + A L + L + H +Q R FK G R+LVATD+
Sbjct: 243 QVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAA 302
Query: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
RG+DI+ + +VIN ++P A+ Y+HR+GR GR G G AI+FVS A D ++L +++A
Sbjct: 303 RGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADD-EMLAEIEA 358
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 125/353 (35%), Positives = 200/353 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F L L++A+ + G++ P+ +Q + IP + G +V+ A++G GKTA FVL L +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 108 --TEPN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P P +V +++L TRELA Q+ +++ YLP +A+ YGGV+ K L
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAM-YGGVDAAPQKKRLI 121
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
E ++V TPGR+L + + + V +LDE D+ML+ + D+ I + P +
Sbjct: 122 -EGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLD-MGFIEDINNIIEKLPEQR 179
Query: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK---LN 280
Q ++FSATLSK+++ + K + D +EI + + + + + L+ ++K+RK L+
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQ--IDQW--LTTVDKDRKSALLS 235
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
L+ ++ Q +IF+++ AA+L L + + HSG SQ R FK G
Sbjct: 236 HLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVP 295
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
LVAT +V RGIDI+ + VINYD+PD AD Y+HR+GR GR G +G AI+FVS
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS 348
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 125/353 (35%), Positives = 200/353 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F L L++A+ + G++ P+ +Q + IP + G +V+ A++G GKTA FVL L +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 108 --TEPN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P P +V +++L TRELA Q+ +++ YLP +A+ YGGV+ K L
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAM-YGGVDAAPQKKRLI 121
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
E ++V TPGR+L + + + V +LDE D+ML+ + D+ I + P +
Sbjct: 122 -EGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLD-MGFIEDINNIIEKLPEQR 179
Query: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK---LN 280
Q ++FSATLSK+++ + K + D +EI + + + + + L+ ++K+RK L+
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQ--IDQW--LTTVDKDRKSALLS 235
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
L+ ++ Q +IF+++ AA+L L + + HSG SQ R FK G
Sbjct: 236 HLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVP 295
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
LVAT +V RGIDI+ + VINYD+PD AD Y+HR+GR GR G +G AI+FVS
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS 348
>MGI|MGI:99526 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006917 "induction of apoptosis"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:99526
GO:GO:0005524 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0005643 GO:GO:0003723 EMBL:CH466525 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:L25125 EMBL:AK049467
EMBL:AK146548 EMBL:BC011270 IPI:IPI00123651 PIR:I49731
RefSeq:NP_031942.2 UniGene:Mm.287901 ProteinModelPortal:Q61655
SMR:Q61655 IntAct:Q61655 PhosphoSite:Q61655
REPRODUCTION-2DPAGE:Q61655 PaxDb:Q61655 PRIDE:Q61655
Ensembl:ENSMUST00000040416 GeneID:13680 KEGG:mmu:13680
InParanoid:Q543M2 ChiTaRS:DDX19A NextBio:284434 Bgee:Q61655
CleanEx:MM_DDX19A Genevestigator:Q61655
GermOnline:ENSMUSG00000015023 Uniprot:Q61655
Length = 478
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 136/383 (35%), Positives = 213/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 153 SRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKVSE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + E K + L +L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNREEKFQALCNLY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>RGD|1303136 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524 GO:GO:0006917
GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 136/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + E
Sbjct: 153 SRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKVGE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + E K + L +L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNREEKFQALCNLY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>RGD|1593382 [details] [associations]
symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box polypeptide 19B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524
GO:GO:0006917 GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 136/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + E
Sbjct: 153 SRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKVGE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + E K + L +L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNREEKFQALCNLY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 121/373 (32%), Positives = 209/373 (56%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F++ L P+LL +I F P+ +Q E IP A+ G D+I A++G GKTA F + LQ
Sbjct: 125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 184
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNEC 166
ALVL TREL +QI F+ + + ++ + GG+++ +DL++
Sbjct: 185 LWHAQQPYFALVLAPTRELTFQIKDTFDALGSSM-GLRSSCIVGGMDMMDQARDLMRK-- 241
Query: 167 PQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
P ++V TPGRI+ L K SLKN+++ ++DE D++L+ +D + +I K+ P +
Sbjct: 242 PHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLD-MDFGPALDKILKVIPIKRTT 300
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285
+FSAT++ +I + + + +P+ + V + + T LVQ + +++ KN L LL+
Sbjct: 301 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQ-TADNLVQSMMLVNDGYKNTILIHLLNE 359
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
+++F ++V+ A L F ++ +H +SQ +RL FK ILVAT
Sbjct: 360 FMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVAT 419
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
D+ RG+DI V++VINYD+P + Y+HRVGR R G G +I+ ++ D ++ +++
Sbjct: 420 DVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQY-DLEMYLRIE 478
Query: 406 ARFEVDIKELPEQ 418
+ V K+LP++
Sbjct: 479 S---VLGKKLPKE 488
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 125/380 (32%), Positives = 204/380 (53%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT---E 109
L P++LRA+ + G+ P+ +Q + IP + G D++ A++G GKTA F L LQ +
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67
Query: 110 PNP-GQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166
P+ G+ V AL+L TRELA QI +S YL +I+ V +GGV+I L+
Sbjct: 68 PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGV 126
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++V TPGR+L L + L V +LDE D+ML+ + D++ + P +Q +
Sbjct: 127 -DVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD-MGFIHDIRRVLTKLPAKRQNL 184
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
+FSAT S +I+ + +K + +P+EI V + QH + + K L+ ++
Sbjct: 185 LFSATFSDDIKALAEKLLHNPLEIEVA-RRNTASDQVTQHVHFVDKKRKRELLSHMIGKG 243
Query: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346
++ QV++F ++ A L + L + S IH SQ R FK G+ R+LVATD
Sbjct: 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD 303
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 406
+ RG+DIE + V+NY++P+ + Y+HR+GR GR G A++ V + +L ++
Sbjct: 304 IAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC-VDEHKLLRDIEK 362
Query: 407 RFEVDIKELPEQIDTSTYMP 426
+ KE+P +I Y P
Sbjct: 363 LLK---KEIP-RIAIPGYEP 378
>POMBASE|SPBC12C2.06 [details] [associations]
symbol:SPBC12C2.06 "cytoplasmic ATP-dependent RNA
helicase Dbp5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0002184 "cytoplasmic translational termination" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IC] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006415 "translational
termination" evidence=ISO] [GO:0015031 "protein transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC12C2.06 GO:GO:0005829 GO:GO:0005524
GO:GO:0005635 GO:GO:0015031 EMBL:CU329671 GO:GO:0031965
GO:GO:0005643 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0006406
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
PIR:T39375 RefSeq:NP_596016.1 PDB:3FHO PDBsum:3FHO
ProteinModelPortal:Q09747 STRING:Q09747 PRIDE:Q09747
EnsemblFungi:SPBC12C2.06.1 GeneID:2539975 KEGG:spo:SPBC12C2.06
EvolutionaryTrace:Q09747 NextBio:20801118 GO:GO:0002184
Uniprot:Q09747
Length = 503
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 123/378 (32%), Positives = 201/378 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKPELL+ I F+ PS++Q + +P + ++I Q++SG GKTA F L+ L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ + + + A+ L +RELA QI Y ++K A G+ + K K +
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAF---GIKDSVPKGA-KID 230
Query: 166 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225
QIV+GTPG ++ L + + L ++++ F+LDE D ML+ + I + P + Q+
Sbjct: 231 A-QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLD 284
++FSAT S+ + ++F + EI + E +L++ G+ Q Y+ SE K L +L
Sbjct: 290 VLFSATFSERVEKYAERFAPNANEIRLKTE-ELSVEGIKQLYMDCQSEEHKYNVLVELYG 348
Query: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 344
L Q +IF K A E+ + + C+ + +R F+ G ++LV
Sbjct: 349 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 408
Query: 345 TDLVGRGIDIERVNIVINYDMP-DSA-----DTYLHRVGRAGRFGTKGLAITFVSSASDS 398
T+++ RGID+ +VN+V+NYDMP D A TYLHR+GR GRFG G++I FV
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSW 468
Query: 399 DILNQVQARFEVDIKELP 416
+ +N +Q F+ I +P
Sbjct: 469 EEMNAIQEYFQRPITRVP 486
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 127/378 (33%), Positives = 200/378 (52%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+GF + L L+ G + P+ VQ CIP + G D + AK+G GKTA FVL L
Sbjct: 2 AGFAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q+ +P + LVL TRELAYQI +F L +K + GG+++ + + L +
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM-VTQALELSR 119
Query: 166 CPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHD 222
P +V+ TPGR+ R + ++K +R +LDE D++LE D D++ I P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPAR 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL-TLHGLVQHYIKLSELEKNRKLND 281
+Q ++FSATL+ ++ + P + + +A + T+ L Q Y+ + E K+ L
Sbjct: 180 RQTLLFSATLTDTLKELQGLATNQPF--FWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 282 LL----DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L+ D L+ ++IF + L +L + NFP++ +HS M Q+ER FK
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSS 297
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397
RIL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G +G AIT V+ D
Sbjct: 298 TYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQY-D 356
Query: 398 SDILNQVQARFEVDIKEL 415
+L+ ++ + + EL
Sbjct: 357 IHLLHAIEEEIKQQLAEL 374
>UNIPROTKB|E9PTL9 [details] [associations]
symbol:Ddx19b "Protein Ddx19b" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1593382 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00959699
Ensembl:ENSRNOT00000059034 ArrayExpress:E9PTL9 Uniprot:E9PTL9
Length = 482
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 136/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 97 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 156
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + E
Sbjct: 157 SRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKVGE 214
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
QIV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 215 --QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 272
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + E K + L +L
Sbjct: 273 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNREEKFQALCNLY 331
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 332 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 386
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 387 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 446
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 447 DSKHSMNILNRIQEHFNKKIERL 469
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 126/371 (33%), Positives = 203/371 (54%)
Query: 52 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN 111
L+ P LL+A+ D GFE P+ +Q E IP + G +++ QA +G GKTA ++L LQ+ +
Sbjct: 9 LITP-LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG 67
Query: 112 PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVV 171
+ L++ TRELA Q+ E + YL ++ YGG I+ L+ +++V
Sbjct: 68 K-KAQVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGV-EVIV 124
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGRIL K ++ ILDE D+ML+ + D++ I + +Q ++FSAT
Sbjct: 125 GTPGRILDHIGRKTFPAAEIKIVILDEADEMLD-MGFIDDIEAILNTLTNRQQTLLFSAT 183
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQV 291
L I+ + KKF+ + + K T+ + Q Y +L E EK L +L++ Q
Sbjct: 184 LPAPIKTIIKKFLGGYKTVKLVGREK-TVPAIRQVYYELPETEKIEGLVSILNSELPIQA 242
Query: 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351
++F ++ R E+ + L + + +H MSQ ER K FK G +LVATD+ RG
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVD 411
+DI V+ VIN+D+P + ++Y+HR+GR GR G +G AIT ++ + +L ++
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYR-ERKLLKAIEEAINKR 361
Query: 412 IKE--LPEQID 420
+K LPE +D
Sbjct: 362 LKREILPEPVD 372
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 126/371 (33%), Positives = 203/371 (54%)
Query: 52 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN 111
L+ P LL+A+ D GFE P+ +Q E IP + G +++ QA +G GKTA ++L LQ+ +
Sbjct: 9 LITP-LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG 67
Query: 112 PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVV 171
+ L++ TRELA Q+ E + YL ++ YGG I+ L+ +++V
Sbjct: 68 K-KAQVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGV-EVIV 124
Query: 172 GTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
GTPGRIL K ++ ILDE D+ML+ + D++ I + +Q ++FSAT
Sbjct: 125 GTPGRILDHIGRKTFPAAEIKIVILDEADEMLD-MGFIDDIEAILNTLTNRQQTLLFSAT 183
Query: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQV 291
L I+ + KKF+ + + K T+ + Q Y +L E EK L +L++ Q
Sbjct: 184 LPAPIKTIIKKFLGGYKTVKLVGREK-TVPAIRQVYYELPETEKIEGLVSILNSELPIQA 242
Query: 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351
++F ++ R E+ + L + + +H MSQ ER K FK G +LVATD+ RG
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVD 411
+DI V+ VIN+D+P + ++Y+HR+GR GR G +G AIT ++ + +L ++
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYR-ERKLLKAIEEAINKR 361
Query: 412 IKE--LPEQID 420
+K LPE +D
Sbjct: 362 LKREILPEPVD 372
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 126/367 (34%), Positives = 196/367 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F F L ELL +I G+ P+ +Q IPQA++G DV+ A +G GKTA F+L Q
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 108 T----EPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
PG L+L TRELA QI + E+ T L IK V GGVN H D+L
Sbjct: 75 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQL-TELTKIKTGVITGGVNYGSHADILT 133
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
+ I+V TPGR+L ++ + + +LDE D+ML+ L + I K
Sbjct: 134 STT-DILVATPGRLLEYIENEQFDAREIEILVLDEADRMLD-LGFSETINRIVAEARWRK 191
Query: 224 QVMMFSATL-SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282
Q M+FSATL S ++ ++ + +P ++++ + ++ ++ L++ + N KLN L
Sbjct: 192 QTMLFSATLESPGVQLFAEEVLNEP--VFLESKPSRKEKAVIHQWLHLAD-DANHKLNLL 248
Query: 283 LDALD---FNQVVIFVKSVSRAAELN-KLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
++ L + V+F L+ KL E P + + M Q++R + FK+G
Sbjct: 249 VNTLKQEGVERTVVFANKRETVQYLSGKLYAE-ELPCVWLEGKMPQDKRNKAIERFKKGE 307
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
++LVATD+ RG+DI+ ++ VIN+DMP D Y+HR+GR GR G KG AI+ V A D
Sbjct: 308 VKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVE-AHDM 366
Query: 399 DILNQVQ 405
++ +++
Sbjct: 367 GVIGKIE 373
>UNIPROTKB|F1MUT6 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 EMBL:DAAA02045970
IPI:IPI00704706 UniGene:Bt.37736 Ensembl:ENSBTAT00000004644
OMA:KMSMNIL Uniprot:F1MUT6
Length = 484
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 136/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 99 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 158
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 159 SQVEPANRHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE 216
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
IV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 217 --HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 274
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ S EK + L ++
Sbjct: 275 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNSRDEKFQALCNIY 333
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 334 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMVVEQRAAVIERFREGK 388
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 389 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 448
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 449 DSKHSMNILNRIQEHFNKKIERL 471
>UNIPROTKB|H0Y6N8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y6N8 PRIDE:H0Y6N8
Ensembl:ENST00000427652 Bgee:H0Y6N8 Uniprot:H0Y6N8
Length = 131
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 95/130 (73%), Positives = 116/130 (89%)
Query: 103 STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162
+TLQQ EP GQV+ LV+CHTRELA+QI E+ERFS Y+P++KVAVF+GG++IK +++L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222
K CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 223 KQVMMFSATL 232
KQVMMFSATL
Sbjct: 122 KQVMMFSATL 131
>UNIPROTKB|F1S432 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:HETIFEV
EMBL:CU929739 Ensembl:ENSSSCT00000003016 Uniprot:F1S432
Length = 481
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 136/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 96 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 155
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 156 SQVEPANRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-N-KLERGQKISE 213
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
IV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 214 --HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 271
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + EK + L +L
Sbjct: 272 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNRDEKFQALCNLY 330
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 331 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMVVEQRAAVIERFREGK 385
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 386 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 445
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 446 DSKHSMNILNRIQEHFNKKIERL 468
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 119/366 (32%), Positives = 205/366 (56%)
Query: 31 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
++ EA + + F+D + L A G+ P+++Q E IP A+ G D+I A
Sbjct: 8 SSAEAPQTAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 67
Query: 91 KSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 150
++G GKT F L L P ++ ALVL TRELA+QI +FE + + ++ AV
Sbjct: 68 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIV 126
Query: 151 GGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMR 209
GG++ + + L + P IV+ TPGR++ L K +L+ +++ ++DE D++L ++D
Sbjct: 127 GGID-SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFE 184
Query: 210 RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK 269
+V +I K+ P D++ +FSAT++K+++ + + +++P++ V + + T+ L Q+Y+
Sbjct: 185 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYLF 243
Query: 270 LSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLT 329
+ K+ L +L+ L N +IF + + LL F +I +H MSQ +RL
Sbjct: 244 IPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLG 303
Query: 330 RYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT--KGL 387
FK + IL+ATD+ RG+DI V++V+N+D+P + Y+HRVGR R G
Sbjct: 304 SLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRCWSQR 363
Query: 388 AITFVS 393
A+TF S
Sbjct: 364 AVTFPS 369
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 126/381 (33%), Positives = 206/381 (54%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F L +L AI D G+ P+ +Q + IP + G D+I A++G GKTA FVL L+Q
Sbjct: 3 FSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQ 62
Query: 108 TEPN---PGQ------VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 158
G+ + AL+L TRELA Q+ +++ YL DI YGGV+ +
Sbjct: 63 LNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYL-DISSMAMYGGVDAQEQ 121
Query: 159 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
K L I+V TPGR+L + + L + +LDE D+ML+ + D+ +I +
Sbjct: 122 KQRLIWGV-DILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLD-MGFIDDINKIIER 179
Query: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK 278
P +Q ++FSAT+S+E+R + K+ + P+EI + + K + + Q + + + K+
Sbjct: 180 LPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGAD-KASKPKIEQWLVTVDKANKSAL 238
Query: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
L+ ++ ++ Q +IF+++ AA+L L + + IHSG +Q+ R FK G
Sbjct: 239 LSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGK 298
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
+ LVAT + RG+DI ++ VINYD+P D Y+HR+GR GR G G AI+ VS +
Sbjct: 299 IKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFR 358
Query: 399 DILNQVQARFE--VDIKELPE 417
++ +++R ++ KE E
Sbjct: 359 ELC-AIESRLGHIIERKEFEE 378
>UNIPROTKB|E2RR50 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
EMBL:AAEX03004077 RefSeq:XP_536790.2 ProteinModelPortal:E2RR50
Ensembl:ENSCAFT00000032061 GeneID:479658 KEGG:cfa:479658
NextBio:20854805 Uniprot:E2RR50
Length = 478
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 135/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 153 SRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKISE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
IV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + EK + L +L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNRDEKFQALCNLY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMMVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>UNIPROTKB|I3LC00 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236
EMBL:CU929739 RefSeq:XP_003126917.1 Ensembl:ENSSSCT00000029799
GeneID:100524144 KEGG:ssc:100524144 Uniprot:I3LC00
Length = 478
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 135/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 153 SRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKISE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
IV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ + EK + L +L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNNRDEKFQALCNLY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMVVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>UNIPROTKB|Q3ZBV2 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 EMBL:BC103093 IPI:IPI00788586
RefSeq:NP_001029743.1 UniGene:Bt.49612 HSSP:Q9UHL0
ProteinModelPortal:Q3ZBV2 SMR:Q3ZBV2 PRIDE:Q3ZBV2
Ensembl:ENSBTAT00000004645 GeneID:529929 KEGG:bta:529929 CTD:55308
HOVERGEN:HBG107989 InParanoid:Q3ZBV2 OMA:MMAINTI OrthoDB:EOG46MBJK
NextBio:20875139 ArrayExpress:Q3ZBV2 Uniprot:Q3ZBV2
Length = 478
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 135/383 (35%), Positives = 212/383 (55%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
+ EP L L T ELA Q E+ + P++K+A G N K+ + +E
Sbjct: 153 SRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRG-N-KLERGQKISE 210
Query: 166 CPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224
IV+GTPG +L ++ K + K ++ F+LDE D M+ + + I +M P + Q
Sbjct: 211 --HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 268
Query: 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLL 283
+++FSAT + +K + DP I + E + TL + Q+Y+ S EK + L ++
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYVLCNSRDEKFQALCNIY 327
Query: 284 DALDFNQVVIFV---KSVS-RAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKEGN 338
A+ Q +IF K+ S AAEL+K E + + + SG M E+R + F+EG
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSK---EGH--QVALLSGEMVVEQRAAVIERFREGK 382
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFV 392
+++LV T++ RGID+E+V++VIN+D+P D TYLHR+GR GRFG +GLA+ V
Sbjct: 383 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
Query: 393 SSASDSDILNQVQARFEVDIKEL 415
S +ILN++Q F I+ L
Sbjct: 443 DSKHSMNILNRIQEHFNKKIERL 465
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 384 (140.2 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 99/299 (33%), Positives = 147/299 (49%)
Query: 108 TEPNPGQVTALVLCHTRELAYQICHEFERFSTYL---PD----------IKVAVFYGGVN 154
T P G ALV+ TREL Q+ + YL PD + V YGG
Sbjct: 78 TRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRP 137
Query: 155 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQE 214
+ + L+ +VVGTPGR+L L + L L + +LDE D+ML+ L D++
Sbjct: 138 YEPQIEALRAGA-DVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLD-LGFLPDIER 195
Query: 215 IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI-KLSEL 273
I + P D+Q M+FSAT+ I + + FM P I + +H + ++ + L
Sbjct: 196 ILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL 255
Query: 274 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKG 333
+K ++ +L A D +IF ++ A ++ L E F +H + Q R K
Sbjct: 256 DKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKA 315
Query: 334 FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
F+ G +LVATD+ RGIDI+ V VINY P+ Y+HR+GR GR G G+A+T V
Sbjct: 316 FRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 374
Score = 143 (55.4 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
S F ++ E++RA+ + G + P +Q +P A+ G DVI QA++GMGKT F + L
Sbjct: 10 STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 69
Query: 106 QQ------TEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 141
Q+ T P G ALV+ TREL Q+ + YL
Sbjct: 70 QRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYL 111
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 510 (184.6 bits), Expect = 1.2e-48, P = 1.2e-48
Identities = 121/387 (31%), Positives = 208/387 (53%)
Query: 25 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGM 84
D A + G+ AKK F L +L+ + G+ PS +Q IP A+LG
Sbjct: 214 DFYAPETEGDEAKKQMY----ENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGK 269
Query: 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYL 141
D+I A +G GKTA F++ +++ P ++ + +VL TRELA Q+ ++ + ++
Sbjct: 270 DIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFV 329
Query: 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECD 200
I + GG+N++ + +LK+ P IV+ TPGR + R+ ++ +V ++DE D
Sbjct: 330 SGITFGLAVGGLNLRQQEQMLKSR-PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEAD 388
Query: 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260
+MLE + ++ EI + P ++Q ++FSAT++ +I+ + ++ P+ I +D K
Sbjct: 389 RMLEE-GFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAAT 447
Query: 261 HGLVQHYIKLSELE--KNRKLNDLLDALD---FNQVVIFVKSVSRAAELNKLLVECNFPS 315
L Q ++++ + + K L +L+ LD ++V+FV A L ++
Sbjct: 448 K-LTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSV 506
Query: 316 ICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
+H ++QE+RL FK +L+ TDL RG+DI ++ +VINYDMP S + YLHR
Sbjct: 507 GELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHR 566
Query: 376 VGRAGRFGTKGLAITFVSSAS-DSDIL 401
VGR R G +G ++TFV +S D I+
Sbjct: 567 VGRTARAGREGRSVTFVGESSQDRSIV 593
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 125/378 (33%), Positives = 202/378 (53%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+GF + L L+ G + P+ VQ CIP + G D + AK+G GKTA FVL L
Sbjct: 2 AGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q+ +P + LVL TRELAYQI +F L +K + GG+++ + + L +
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM-VAQALELSR 119
Query: 166 CPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHD 222
P +V+ TPGR+ R + ++K ++ ++DE D++LE D D++ I P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPAR 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL-TLHGLVQHYIKLSELEKNRKLND 281
+Q ++FSATL+ ++ + +P + + +A + T+ L Q Y+ + E K+ L
Sbjct: 180 RQTLLFSATLTDTLKELQGLATNEPF--FWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 282 LL----DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L+ D L+ ++IF + L +L + NFP++ +HS M Q+ER FK
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397
RIL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G +G AIT V+ D
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQY-D 356
Query: 398 SDILNQVQARFEVDIKEL 415
+L+ ++ + + + EL
Sbjct: 357 IHLLHAIEEQIKQQLAEL 374
>DICTYBASE|DDB_G0281553 [details] [associations]
symbol:helC "DEAD-box RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281553 GO:GO:0007275
GO:GO:0005524 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
OMA:PQAICLA HSSP:Q9UHL0 EMBL:AF002677 RefSeq:XP_640633.1
ProteinModelPortal:Q54TF8 EnsemblProtists:DDB0215338 GeneID:8623244
KEGG:ddi:DDB_G0281553 Uniprot:Q54TF8
Length = 465
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 119/377 (31%), Positives = 206/377 (54%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQ 106
F + LKPELL+ + G+ PS++Q +P I + +I Q++SG GKTA F L L
Sbjct: 72 FEELGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSPNNLIAQSQSGTGKTAAFTLGMLN 131
Query: 107 QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166
+P+ A+ + T+ELA Q + + +IK ++ + + KN
Sbjct: 132 CVDPSINAPQAICISPTKELALQTFEVISKIGQF-SNIKPLLYISEIEVP------KNVT 184
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Q+++GTPG+IL K LS+K ++ +LDE D +++ ++ + I ++ P + +V
Sbjct: 185 NQVIIGTPGKILENVIKKQLSVKFLKMVVLDEADFIVKMKNVPNQIAMINRLLPSNVKVC 244
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLDA 285
+FSAT S + + KK +QDP +L++ + Q++I SE K L+D+
Sbjct: 245 LFSATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYGF 304
Query: 286 LDFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 344
+ Q ++FV +++ A +++ +V E + S+ ++ EER + K FK+G ++L+
Sbjct: 305 ISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLIT 364
Query: 345 TDLVGRGIDIERVNIVINYDMP-DSADT-----YLHRVGRAGRFGTKGLAITFVSSASDS 398
T+++ RGIDI +V++VINYD+P D YLHR+GR GRFG G+A++FV +
Sbjct: 365 TNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYDQQST 424
Query: 399 DILNQVQARFEVDIKEL 415
+ L + V +KEL
Sbjct: 425 NKLMNISTHLGVPLKEL 441
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 128/373 (34%), Positives = 193/373 (51%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L P LL AI + GF P++VQ E IPQA+ G DV+ A +G GKTA FV+ LQ
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 108 TEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P G L+L TRELA Q+ + + + + + GGV + H D+L
Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTR-LNIFTITGGVQYQEHADILA 123
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
IVV TPGR+L + + + ILDE D+ML+ + V + K
Sbjct: 124 TT-QDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLD-MGFGPTVDRLSTECRWRK 181
Query: 224 QVMMFSATLS-KEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELEKNRKLND 281
Q ++FSATL + + ++DP +VD E + + Q Y + ++ +L
Sbjct: 182 QTLLFSATLEGRGVEGFTADLLKDPA--HVDAEPPRRERKKISQWYHRADDMPHKVELLK 239
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
+ + ++F+K+ R A+L L + P I M Q+ R F+EG+ I
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
L+ATD+ RGID+ ++ VIN+D+P SAD YLHR+GR GR G KG+AI+ V A D ++
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE-AHDQPMM 358
Query: 402 NQVQARFEVDIKE 414
+V+ + ++KE
Sbjct: 359 ARVERYIKEEVKE 371
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 128/373 (34%), Positives = 193/373 (51%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L P LL AI + GF P++VQ E IPQA+ G DV+ A +G GKTA FV+ LQ
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 108 TEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P G L+L TRELA Q+ + + + + + GGV + H D+L
Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTR-LNIFTITGGVQYQEHADILA 123
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
IVV TPGR+L + + + ILDE D+ML+ + V + K
Sbjct: 124 TT-QDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLD-MGFGPTVDRLSTECRWRK 181
Query: 224 QVMMFSATLS-KEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELEKNRKLND 281
Q ++FSATL + + ++DP +VD E + + Q Y + ++ +L
Sbjct: 182 QTLLFSATLEGRGVEGFTADLLKDPA--HVDAEPPRRERKKISQWYHRADDMPHKVELLK 239
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
+ + ++F+K+ R A+L L + P I M Q+ R F+EG+ I
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
L+ATD+ RGID+ ++ VIN+D+P SAD YLHR+GR GR G KG+AI+ V A D ++
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE-AHDQPMM 358
Query: 402 NQVQARFEVDIKE 414
+V+ + ++KE
Sbjct: 359 ARVERYIKEEVKE 371
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 115/332 (34%), Positives = 188/332 (56%)
Query: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124
GF+ PS +Q IP+ + G D+I AK+G GKTA F + L Q +P V A++L TR
Sbjct: 23 GFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTR 82
Query: 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARD 183
ELA QI +F + ++ +V GG++ + + L+ ++ P I+V TPGR+ + L
Sbjct: 83 ELAVQIGEQFNAIGAPM-NVNCSVVIGGID-NVTQALILDKRPHIIVATPGRLASHLNNG 140
Query: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK-MTPHDK-QVMMFSATLSKEIRPVCK 241
++LK + +LDE D++L D ++ I + + P +K Q ++FSAT++K + +
Sbjct: 141 LKIALKFCKFLVLDEADRLLGE-DFELEIASILEHLPPPEKRQTLLFSATMTKNLTKLDS 199
Query: 242 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRA 301
+ P I+ D+ T+ L Q YI + K+ L +L + + ++FV +
Sbjct: 200 IALNKPF-IFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAV 258
Query: 302 AELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361
+ +L + + PS+ +HS + Q+ RL K FK G ++LVATD+ RG+DI V IVI
Sbjct: 259 EAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVI 318
Query: 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
NY + +S+ Y+HRVGR RFG G AI+F++
Sbjct: 319 NYKLSNSSKDYIHRVGRTARFGRSGRAISFIT 350
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 509 (184.2 bits), Expect = 2.5e-48, P = 2.5e-48
Identities = 128/387 (33%), Positives = 207/387 (53%)
Query: 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100
V H+ F + L LLRA G++ P+ +Q CIP A+ G D+ A +G GKTA F
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 101 VLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI 157
L TL++ P +V A L+L TRELA QI H + DIK + GG++++
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQI-HSMIQNLAQFTDIKCGLIVGGLSVRE 280
Query: 158 HKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216
+ +L++ P IVV TPGR++ R+ + L ++ ILDE D++L++ ++ E+
Sbjct: 281 QEVVLRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT-GFATEITELV 338
Query: 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EK 275
++ P +Q M+FSAT+++E++ + K + P+ + D A+ GL + +++ E
Sbjct: 339 RLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRP-PGLTEEVVRIRRTREA 397
Query: 276 NRKLNDL-LDALDFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKG 333
N++ L L F VI +AA K+L + +H ++Q +RL +
Sbjct: 398 NQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLEL 457
Query: 334 FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
F++ L+ATD+ RG+DI V VINY P D+Y+HRVGR R G +G A+TFV+
Sbjct: 458 FRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT 517
Query: 394 SASDSDILNQVQARFEVDIKE--LPEQ 418
SD +L + + +K +PEQ
Sbjct: 518 D-SDRSLLKVIAKKVGSKLKSRVIPEQ 543
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 133/387 (34%), Positives = 198/387 (51%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F + L LL A+ D GF P+ +Q IP A+ G DV+ A +G GKTA ++L LQ
Sbjct: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65
Query: 108 TEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P G L+L TRELA Q+ + + + +A GGV H ++
Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVF- 123
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
+E IVV T GR+L ++++ + V ILDE D+ML+ + +D++ I T K
Sbjct: 124 SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLD-MGFAQDIEHIAGETRWRK 182
Query: 224 QVMMFSATLSKE-IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLND 281
Q ++FSATL + I+ ++ ++DP+E+ + + + Q Y + +LE K L
Sbjct: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTR-ERKKIHQWYYRADDLEHKTALLVH 241
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
LL + + ++FV+ R EL L E + + M Q +R K EG +
Sbjct: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
LVATD+ RGIDI V+ V N+DMP S DTYLHR+GR R G KG AI+ V A D +L
Sbjct: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE-AHDHLLL 360
Query: 402 NQVQARFEVDIK-ELPEQIDTSTYMPS 427
+V E IK + +++ T PS
Sbjct: 361 GKVGRYIEEPIKARVIDELRPKTRAPS 387
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 120/375 (32%), Positives = 206/375 (54%)
Query: 55 PELL-RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG 113
PE L R + SG+E P+ +Q + IP +LG DV+ A +G GKTA F+L + +
Sbjct: 212 PEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQSK 271
Query: 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGT 173
+ LVL TRELA QI + + + LP ++ A+ GG+ + L+ Q+++ T
Sbjct: 272 SPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRI-QVIIAT 330
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGR+L + + + + L +++ ++DE D ML+ + ++ V ++ + PHD Q ++ SAT+
Sbjct: 331 PGRLLDIIKQRSVELGSIKIVVVDEADTMLK-MGFQQQVLDVLEQLPHDCQTVLASATIP 389
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-DALDFNQ-V 291
+ + + ++DP+ I E L + Q + + E K +KL ++L D F V
Sbjct: 390 ASVEQLACQLLRDPVAITAG-ERNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPV 448
Query: 292 VIFVKSVSRAAELNKLLVECN-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
++FV A L++ + + S +HS +Q ER KG EG+ ++V+T ++GR
Sbjct: 449 LVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGR 508
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ V +V+N+DMP S D Y+H++GR GR G G AITF+++ S + + R +
Sbjct: 509 GLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKR-LFWDIAKRVKP 567
Query: 411 DIKELPEQIDTSTYM 425
LP Q+ S Y+
Sbjct: 568 TGSLLPPQLLNSPYL 582
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 122/377 (32%), Positives = 201/377 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ- 106
F L +L+ + + G++ P+ +Q E IP + DV+ A++G GKTA F L LQ
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Query: 107 -----QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161
Q++ + ALVL TRELA Q+ F +++ DI+V + YGGV+I+ + +
Sbjct: 63 LMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGT-DIRVGIAYGGVSIEAQQAV 121
Query: 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221
N +++ TPGR+L R L+L + + DE D+ML+ + ++Q + K P
Sbjct: 122 F-NAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLD-MGFMDEIQAVLKQVPA 179
Query: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281
+Q ++FSATL I K ++DP I V + T + Q + K ++
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNLLRDPKRIEVA-KPNTTAAQIEQRVYAIDSDRKTEFVSH 238
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
L+ + ++ QV+IF ++ +L L + + H +SQ R + FK+G ++
Sbjct: 239 LVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQV 298
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
LVATD+ RG+DI + VIN+++P A+ Y+HR+GR GR G+ GLAIT S D+ +L
Sbjct: 299 LVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ-EDALLL 357
Query: 402 NQVQARFEVDIKELPEQ 418
+V+ + K LP+Q
Sbjct: 358 EEVETLLD---KRLPQQ 371
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 132/375 (35%), Positives = 199/375 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF L P LL ++ G P+ +Q E +P A+ D++ +A +G GKTA F+L LQ
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 108 TEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P GQ L+L TRELA QI H + + +A+ GGV ++ LK
Sbjct: 63 LIDFPRRYSGQARVLILTPTRELASQI-HRYACHLATDQGLNIAIITGGVPYAPQEEALK 121
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
I+V TPGR++ S ++V I+DE D+ML+ + V+ I K
Sbjct: 122 GNI-DILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLD-MGFSAVVKAIALEAQGRK 179
Query: 224 QVMMFSATL--SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK--- 278
Q M+FSATL S IR ++ + DP+EI VD K + +I L++ +K+ K
Sbjct: 180 QNMLFSATLEGSGVIR-FAREVLNDPIEIDVDAPRKEKAK--IHQWIHLAD-DKDHKFAL 235
Query: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
L LL D + ++FVK+ + L L++ P + M Q++R F +G
Sbjct: 236 LCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGE 295
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
+L+ATD+ RGIDI+ ++ VIN+DMP SADTY+HR+GR GR G KG AI+ ++ A D
Sbjct: 296 VNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAIS-LAEAHDM 354
Query: 399 DILNQVQARFEVDIK 413
I+ +++ E +K
Sbjct: 355 RIVGKIERYIEQPLK 369
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 127/382 (33%), Positives = 194/382 (50%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F+ F P + I +G+E P+ +Q + IP + G DV+ A++G GKTA F L L +
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 108 TEPNP-GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166
+ G+V ALV+ TRELA QI F V V YGGV + LK
Sbjct: 63 LQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTV-YGGVGVNPQVQKLKAGA 121
Query: 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
++VV PGR+L + L + +LDE D+M + + D++ + K P +Q +
Sbjct: 122 -EVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFD-MGFLPDIRRVLKHLPPRRQTL 179
Query: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDA 285
+FSAT+ +IR + + + DP+ + V A V H + E K L +LL
Sbjct: 180 LFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVT---VAHALYPVEQHLKTPLLLELLRH 236
Query: 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345
D V+IF ++ RA L + L + + + + +SQ R GF++G +ILVAT
Sbjct: 237 TDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVAT 296
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405
D+ RGID+ +V+ VINYD+PD+A+ Y+HR+GR GR G A T V+S D ++ ++
Sbjct: 297 DIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTS-DDGAMVRAIE 355
Query: 406 ARFEVDIKELPEQ-IDTSTYMP 426
I+ Q D S P
Sbjct: 356 RSLGAPIERRTVQGFDYSVPAP 377
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 132/375 (35%), Positives = 199/375 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F DF L P LL ++ G P+ +Q E +P A+ D++ +A +G GKTA F+L LQ
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 108 TEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163
P GQ L+L TRELA QI H + + +A+ GGV ++ LK
Sbjct: 63 LIDFPRRYSGQARVLILTPTRELASQI-HRYACHLATDQGLNIAIITGGVPYAPQEEALK 121
Query: 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
I+V TPGR++ S ++V I+DE D+ML+ + V+ I K
Sbjct: 122 GNI-DILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLD-MGFSAVVKAIALEAQGRK 179
Query: 224 QVMMFSATL--SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK--- 278
Q M+FSATL S IR ++ + DP+EI VD K + +I L++ +K+ K
Sbjct: 180 QNMLFSATLEGSGVIR-FAREVLNDPIEIDVDAPRKEKAK--IHQWIHLAD-DKDHKFAL 235
Query: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338
L LL D + ++FVK+ + L L++ P + M Q++R F +G
Sbjct: 236 LCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGE 295
Query: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398
+L+ATD+ RGIDI+ ++ VIN+DMP SADTY+HR+GR GR G KG AI+ ++ A D
Sbjct: 296 VNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAIS-LAEAHDM 354
Query: 399 DILNQVQARFEVDIK 413
I+ +++ E +K
Sbjct: 355 RIVGKIERYIEQPLK 369
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 122/377 (32%), Positives = 201/377 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ- 106
F L +L+ + + G++ P+ +Q E IP + DV+ A++G GKTA F L LQ
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Query: 107 -----QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161
Q++ + ALVL TRELA Q+ F +++ DI+V + YGGV+I+ + +
Sbjct: 63 LMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGT-DIRVGIAYGGVSIEAQQAV 121
Query: 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221
N +++ TPGR+L R L+L + + DE D+ML+ + ++Q + K P
Sbjct: 122 F-NAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLD-MGFMDEIQAVLKQVPA 179
Query: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281
+Q ++FSATL I K ++DP I V + T + Q + K ++
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNLLRDPKRIEVA-KPNTTAAQIEQRVYAIDSDRKTEFVSH 238
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
L+ + ++ QV+IF ++ +L L + + H +SQ R + FK+G ++
Sbjct: 239 LVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQV 298
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
LVATD+ RG+DI + VIN+++P A+ Y+HR+GR GR G+ GLAIT S D+ +L
Sbjct: 299 LVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ-EDALLL 357
Query: 402 NQVQARFEVDIKELPEQ 418
+V+ + K LP+Q
Sbjct: 358 EEVETLLD---KRLPQQ 371
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 112/301 (37%), Positives = 174/301 (57%)
Query: 123 TRELAYQICHEFERFSTYLPDIKVAVFY---GGVNIKIHKDLLKNECPQIVVGTPGRILA 179
+REL Y + ++ L D A + GG N++ L+ E P IVVGTPGR+
Sbjct: 12 SREL-YNYAFKIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 70
Query: 180 LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
+ + LS K ++ F+LDE D+ML S + + EIF+ QV++ SAT+ ++ V
Sbjct: 71 MLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEV 129
Query: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSV 298
KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L Q VIF+ +
Sbjct: 130 TKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTR 188
Query: 299 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358
+ L + + +F +H M Q+ER + F+ G+ R+L+ TDL+ RGID+++V+
Sbjct: 189 RKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 248
Query: 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418
+VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++ + ++E+P
Sbjct: 249 LVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMN 307
Query: 419 I 419
+
Sbjct: 308 V 308
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 507 (183.5 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 121/381 (31%), Positives = 207/381 (54%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
F D L LL+AI GF+ P+ +Q C+P +LG D+ A +G GKTA F+L L++
Sbjct: 203 FHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLER 262
Query: 108 T--EPNPGQVT-ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164
+P QVT LVL TREL Q+ H R I + GG+++K + L+
Sbjct: 263 LIYKPRETQVTRVLVLVPTRELGIQV-HTVARQLAQFTTISTCLAVGGLDLKSQEAALRA 321
Query: 165 ECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
P +++ TPGR++ L L + ILDE D+ML+ ++EI +M + +
Sbjct: 322 G-PDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEY-FEEQMKEIIRMCAYQR 379
Query: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---SELEKNRKLN 280
Q M+FSAT+S+E++ + ++ P+ I+V+ + + L Q ++++ E ++ +
Sbjct: 380 QTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPY-LRQEFVRIRPNKEGDREAIVA 438
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
LL + V++F ++ +A ++ LL +H +SQ +RL + FK+
Sbjct: 439 ALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQID 498
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 400
ILVATD+ RG+DIE V VIN+ MP++ Y+HRVGR R G G +++ V ++ +
Sbjct: 499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGE-TERKM 557
Query: 401 LNQV--QARFEVDIKELPEQI 419
L ++ +A+F V + +P+++
Sbjct: 558 LKEIVKKAKFPVKARVIPQEV 578
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 121/375 (32%), Positives = 205/375 (54%)
Query: 55 PELLRA-IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG 113
PE L + SG+E P+ +Q + IP +LG DV+ A +G GKTA F+L + +
Sbjct: 212 PEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESK 271
Query: 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGT 173
+AL+L TRELA QI ++ + + LP +K + GG+ + L+ ++++ T
Sbjct: 272 TPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHV-KVIIAT 330
Query: 174 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
PGR+L + + + L ++ ++DE D ML+ + ++ V +I + P+D Q ++ SAT+
Sbjct: 331 PGRLLDIIKQSSVELCGIKIVVVDEADTMLK-MGFQQQVLDILEHVPNDSQTILVSATIP 389
Query: 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-DALDFNQ-V 291
I + + + +P+ I + E L + Q + + E K +KL ++L D F V
Sbjct: 390 TSIEQLASQLLHNPVRI-ITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPV 448
Query: 292 VIFVKSVSRAAELNKLLVECN-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350
++FV A L++ + + S+ IHS SQ ER KG EG+ ++V+T ++GR
Sbjct: 449 LVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGR 508
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410
G+D+ V +V+N+DMP S D Y+H+VGR GR G G AITF+++ S + + R +
Sbjct: 509 GLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKR-LFWDIAKRVKP 567
Query: 411 DIKELPEQIDTSTYM 425
LP Q+ S Y+
Sbjct: 568 TGSILPPQLLNSPYL 582
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 125/378 (33%), Positives = 202/378 (53%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+GF + L L+ G + P+ VQ CIP + G D + AK+G GKTA FVL L
Sbjct: 2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q+ +P + LVL TRELAYQI +F L +K + GG+++ + + L +
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM-VAQALELSR 119
Query: 166 CPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHD 222
P +V+ TPGR+ R + S+K +R ++DE D++LE D D++ I P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTR 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL-TLHGLVQHYIKLSELEKNRKLND 281
+Q ++FSATL+ ++ + P + + +A + T+ L Q Y+ + E K+ L
Sbjct: 180 RQTLLFSATLTDTLKELQGLATNQPF--FWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 282 LLDAL-DFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L+ D ++ ++IF + L +L + NFP++ +HS M Q+ER FK
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397
RIL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G +G AIT V+ D
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQY-D 356
Query: 398 SDILNQVQARFEVDIKEL 415
+++ ++ + + ++EL
Sbjct: 357 IHLVHAIEEQIKKQLEEL 374
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 111/301 (36%), Positives = 175/301 (58%)
Query: 123 TRELAYQICHEFERFSTYLPDIKVAVFY---GGVNIKIHKDLLKNECPQIVVGTPGRILA 179
+REL + + + ++ L D A + GG N++ L+ E P IVVGTPGR+
Sbjct: 12 SRELLFPVL-KIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 70
Query: 180 LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239
+ + LS K ++ F+LDE D+ML S + + EIF+ QV++ SAT+ ++ V
Sbjct: 71 MLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEV 129
Query: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSV 298
KKFM+DP+ I V E +LTL G+ Q YI + E K L DL + L Q VIF+ +
Sbjct: 130 TKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTR 188
Query: 299 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358
+ L + + +F +H M Q+ER + F+ G+ R+L+ TDL+ RGID+++V+
Sbjct: 189 RKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 248
Query: 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418
+VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D IL ++ + ++E+P
Sbjct: 249 LVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMN 307
Query: 419 I 419
+
Sbjct: 308 V 308
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 125/377 (33%), Positives = 201/377 (53%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
+GF + L L+ G + P+ VQ CIP + G D + AK+G GKTA FVL L
Sbjct: 2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 106 QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 165
Q+ +P + LVL TRELAYQI +F L +K + GG+++ + + L +
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM-VAQALELSR 119
Query: 166 CPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMTPHD 222
P +V+ TPGR+ R + S+K +R ++DE D++LE D D++ I P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL-TLHGLVQHYIKLSELEKNRKLND 281
+Q ++FSATL+ +R + P + + +A + T+ L Q Y+ + E K+ L
Sbjct: 180 RQTLLFSATLTDTLRELQSLATNQPF--FWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 282 LLDAL-DFNQ---VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337
L+ D ++ ++IF + L +L + NFP++ +HS M Q+ER FK
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397
RIL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G +G AIT V+ D
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQY-D 356
Query: 398 SDILNQVQARFEVDIKE 414
+++ ++ + + ++E
Sbjct: 357 IHLVHAIEEQIKKKLEE 373
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 117/353 (33%), Positives = 189/353 (53%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ- 106
F L LL + + G +P+ +Q + IP + G DV+ A++G GKTA F L +Q
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 107 ------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160
Q E N ++ ALVL TRELA Q+ + ++ ++K+ YGG ++K+ +
Sbjct: 68 FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGT-ELKIVAVYGGTSMKVQLN 126
Query: 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
L+ I++ TPGR+L A K L L V +LDE D+ML+ + D+Q + +
Sbjct: 127 HLRGGV-DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLD-MGFMPDLQRVLRRLS 184
Query: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280
+Q + FSAT +I+ V + M+DP+E+ V + T + Q + + K L+
Sbjct: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTP-SNSTAETVQQMVYPVDKKRKRELLS 243
Query: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340
L+ + ++ QV++F K+ + L + L ++ I+ SQ R FK G R
Sbjct: 244 YLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVR 303
Query: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
L+ATD+ RG+DI ++ V+NYDMP A+ Y+HR+GR GR G GLA++ +S
Sbjct: 304 ALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLS 356
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 121/379 (31%), Positives = 199/379 (52%)
Query: 52 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ---- 107
L+ P LL + + + P+ +Q IP G D+I A +G GKTA F L LQ+
Sbjct: 15 LITP-LLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLRED 73
Query: 108 ----TEPNPGQ-VTALVLCHTRELAYQICHEFERFSTYLP-DIKVAVFYGGVNIKIHKDL 161
++ + G VT LVL TRELA Q+ + ++ + +IK +GGV++ I
Sbjct: 74 ISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLA 133
Query: 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221
L+ I+V TPGR+L L + L V+ +LDE D+ML SL ++ + +TP
Sbjct: 134 LRGGV-DILVATPGRLLDLISSNAIKLDKVKTLVLDEADRML-SLGFTEELTALLALTPK 191
Query: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281
KQ ++FSAT +++ + ++ + +P+EI + TL VQ +++ EK L
Sbjct: 192 KKQTLLFSATFPEQVTTLTQELLNNPIEIQLQSADASTL---VQRVFTVNKGEKTAVLAH 248
Query: 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341
L+ + Q +IFV + L + L + + H Q ER GFK G+ +
Sbjct: 249 LIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEV 308
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401
L+ATD+ RG+DIE++ +VIN+++P S Y+HR+GR+GR G GLAI+ + D
Sbjct: 309 LIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDH-EDYHHF 367
Query: 402 NQVQARFEVDIKELPEQID 420
+ ++ + + +K EQ++
Sbjct: 368 SVIEKKNKFRLKR--EQVE 384
WARNING: HSPs involving 721 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 427 414 0.00081 118 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 971
No. of states in DFA: 589 (63 KB)
Total size of DFA: 235 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.00u 0.17s 34.17t Elapsed: 00:00:02
Total cpu time: 34.05u 0.17s 34.22t Elapsed: 00:00:02
Start: Fri May 10 13:17:35 2013 End: Fri May 10 13:17:37 2013
WARNINGS ISSUED: 2