Query 014314
Match_columns 427
No_of_seqs 232 out of 2477
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.1E-72 4.5E-77 482.7 30.5 366 44-414 59-425 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 2.4E-70 5.1E-75 500.9 35.2 373 45-421 90-473 (519)
3 COG0513 SrmB Superfamily II DN 100.0 4.3E-66 9.4E-71 493.9 40.7 366 46-413 29-398 (513)
4 KOG0328 Predicted ATP-dependen 100.0 1.7E-65 3.6E-70 422.1 29.8 371 44-419 25-396 (400)
5 PTZ00110 helicase; Provisional 100.0 5.5E-64 1.2E-68 484.2 40.8 377 40-420 124-508 (545)
6 PRK11776 ATP-dependent RNA hel 100.0 1E-63 2.2E-68 478.4 41.9 364 46-414 4-367 (460)
7 KOG0342 ATP-dependent RNA heli 100.0 1.2E-64 2.5E-69 447.8 31.9 358 45-405 81-446 (543)
8 PRK04837 ATP-dependent RNA hel 100.0 1.9E-63 4.2E-68 471.4 41.2 366 45-415 7-381 (423)
9 KOG0326 ATP-dependent RNA heli 100.0 1.1E-65 2.4E-70 430.2 22.6 378 42-425 81-458 (459)
10 KOG0338 ATP-dependent RNA heli 100.0 4.5E-65 9.8E-70 451.3 26.3 357 46-407 181-544 (691)
11 KOG0345 ATP-dependent RNA heli 100.0 9.6E-64 2.1E-68 439.1 33.9 373 47-421 5-389 (567)
12 PRK11634 ATP-dependent RNA hel 100.0 4.4E-63 9.5E-68 481.6 41.5 367 46-416 6-372 (629)
13 PRK10590 ATP-dependent RNA hel 100.0 1.7E-62 3.7E-67 467.6 41.0 363 47-414 2-370 (456)
14 PLN00206 DEAD-box ATP-dependen 100.0 1.8E-62 3.8E-67 472.7 40.4 380 40-425 115-504 (518)
15 PRK04537 ATP-dependent RNA hel 100.0 7.6E-62 1.6E-66 470.7 41.8 365 46-415 9-383 (572)
16 KOG0333 U5 snRNP-like RNA heli 100.0 1.4E-62 2.9E-67 437.1 33.5 366 37-407 236-635 (673)
17 KOG0329 ATP-dependent RNA heli 100.0 2.7E-64 5.7E-69 409.3 16.8 382 9-426 4-386 (387)
18 KOG0340 ATP-dependent RNA heli 100.0 1.8E-62 3.9E-67 416.6 28.3 370 45-418 6-383 (442)
19 PRK11192 ATP-dependent RNA hel 100.0 8.2E-61 1.8E-65 455.7 42.0 362 47-413 2-369 (434)
20 KOG0343 RNA Helicase [RNA proc 100.0 2.3E-62 5.1E-67 437.9 29.0 365 46-415 69-441 (758)
21 PRK01297 ATP-dependent RNA hel 100.0 9.8E-61 2.1E-65 458.8 41.7 369 45-417 86-464 (475)
22 KOG0336 ATP-dependent RNA heli 100.0 5.5E-62 1.2E-66 420.9 28.1 375 41-420 214-596 (629)
23 PTZ00424 helicase 45; Provisio 100.0 2.9E-59 6.3E-64 442.4 42.3 371 45-420 27-398 (401)
24 KOG0335 ATP-dependent RNA heli 100.0 4.4E-61 9.5E-66 432.2 27.9 378 40-421 68-469 (482)
25 KOG0346 RNA helicase [RNA proc 100.0 1.3E-59 2.7E-64 409.7 27.2 364 46-412 19-426 (569)
26 KOG0348 ATP-dependent RNA heli 100.0 1.7E-59 3.8E-64 418.1 28.0 363 43-408 133-566 (708)
27 KOG0332 ATP-dependent RNA heli 100.0 7.9E-58 1.7E-62 390.7 25.6 366 46-417 90-465 (477)
28 KOG0341 DEAD-box protein abstr 100.0 4.3E-59 9.2E-64 400.5 16.3 372 43-418 167-551 (610)
29 KOG0347 RNA helicase [RNA proc 100.0 7.1E-58 1.5E-62 409.1 19.2 362 43-410 178-584 (731)
30 KOG0339 ATP-dependent RNA heli 100.0 1.2E-55 2.6E-60 391.1 30.8 372 45-421 222-600 (731)
31 KOG0327 Translation initiation 100.0 1.5E-55 3.2E-60 379.8 25.9 369 46-420 26-394 (397)
32 TIGR03817 DECH_helic helicase/ 100.0 1.1E-53 2.4E-58 423.9 37.6 351 53-415 21-407 (742)
33 KOG0334 RNA helicase [RNA proc 100.0 9E-54 2E-58 411.5 28.9 376 39-419 358-743 (997)
34 KOG0350 DEAD-box ATP-dependent 100.0 1E-53 2.2E-58 378.5 26.9 360 47-408 128-553 (620)
35 KOG4284 DEAD box protein [Tran 100.0 8.3E-54 1.8E-58 389.4 26.4 361 42-405 21-389 (980)
36 KOG0337 ATP-dependent RNA heli 100.0 3.9E-53 8.4E-58 367.4 23.3 367 45-416 20-388 (529)
37 PLN03137 ATP-dependent DNA hel 100.0 2.2E-51 4.7E-56 405.0 35.3 330 50-395 441-787 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 9.8E-51 2.1E-55 387.9 34.4 317 64-397 7-335 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 9.2E-50 2E-54 390.7 35.7 326 53-396 9-344 (607)
40 KOG0344 ATP-dependent RNA heli 100.0 1.2E-50 2.6E-55 367.3 22.4 377 42-421 128-520 (593)
41 TIGR01389 recQ ATP-dependent D 100.0 6.3E-49 1.4E-53 386.4 33.1 319 59-395 3-331 (591)
42 PRK02362 ski2-like helicase; P 100.0 2.8E-48 6.2E-53 389.7 32.6 356 47-418 2-418 (737)
43 PRK13767 ATP-dependent helicas 100.0 1.7E-47 3.6E-52 387.3 34.6 355 53-414 18-418 (876)
44 PRK00254 ski2-like helicase; P 100.0 6.5E-47 1.4E-51 379.0 32.7 335 47-396 2-389 (720)
45 COG1201 Lhr Lhr-like helicases 100.0 3.5E-45 7.5E-50 354.2 32.0 354 53-413 8-381 (814)
46 TIGR00580 mfd transcription-re 100.0 2.4E-44 5.1E-49 360.4 37.8 323 51-394 434-769 (926)
47 PRK01172 ski2-like helicase; P 100.0 3E-45 6.5E-50 365.7 31.0 337 47-399 2-382 (674)
48 COG0514 RecQ Superfamily II DN 100.0 9.5E-45 2.1E-49 338.9 28.7 322 59-396 7-338 (590)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.7E-44 1.7E-48 346.7 33.1 316 64-392 12-388 (844)
50 PRK10689 transcription-repair 100.0 1.5E-43 3.3E-48 362.0 35.6 317 56-394 589-918 (1147)
51 PRK10917 ATP-dependent DNA hel 100.0 9E-43 2E-47 344.9 37.4 320 55-395 248-589 (681)
52 TIGR00643 recG ATP-dependent D 100.0 8.3E-43 1.8E-47 343.1 35.0 317 57-393 225-564 (630)
53 PRK09751 putative ATP-dependen 100.0 3.4E-42 7.4E-47 353.8 31.4 321 88-415 1-406 (1490)
54 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-41 2.4E-46 304.5 28.3 322 66-395 13-481 (542)
55 PHA02653 RNA helicase NPH-II; 100.0 1.1E-41 2.4E-46 330.1 30.7 309 70-397 166-516 (675)
56 PRK09401 reverse gyrase; Revie 100.0 1.3E-40 2.7E-45 341.4 36.3 284 65-367 78-410 (1176)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.9E-40 6.3E-45 327.8 32.0 302 72-394 6-335 (819)
58 COG1202 Superfamily II helicas 100.0 1.1E-40 2.3E-45 300.8 25.7 341 43-395 191-553 (830)
59 COG1204 Superfamily II helicas 100.0 1E-40 2.2E-45 327.6 27.2 340 53-402 16-415 (766)
60 PRK11664 ATP-dependent RNA hel 100.0 4.1E-40 8.9E-45 327.5 31.6 303 72-394 9-338 (812)
61 PRK14701 reverse gyrase; Provi 100.0 5E-39 1.1E-43 336.2 34.0 321 56-392 67-453 (1638)
62 PRK12898 secA preprotein trans 100.0 3.4E-39 7.4E-44 307.8 29.6 316 65-395 101-586 (656)
63 PHA02558 uvsW UvsW helicase; P 100.0 1.8E-39 3.8E-44 311.9 27.2 306 67-392 113-449 (501)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.1E-39 4.5E-44 301.8 24.8 298 85-394 1-335 (358)
65 TIGR01054 rgy reverse gyrase. 100.0 3.9E-38 8.4E-43 323.5 35.4 292 57-366 67-408 (1171)
66 COG1205 Distinct helicase fami 100.0 3.8E-38 8.2E-43 313.9 30.7 352 53-409 55-437 (851)
67 KOG0351 ATP-dependent DNA heli 100.0 2.9E-38 6.3E-43 312.3 28.0 337 56-407 251-604 (941)
68 PRK09200 preprotein translocas 100.0 9.2E-38 2E-42 304.3 29.9 316 65-395 76-541 (790)
69 PRK13766 Hef nuclease; Provisi 100.0 3.5E-37 7.6E-42 313.5 35.5 323 66-396 13-480 (773)
70 TIGR03714 secA2 accessory Sec 100.0 3.1E-37 6.7E-42 297.8 29.5 317 69-396 69-538 (762)
71 KOG0352 ATP-dependent DNA heli 100.0 2E-38 4.4E-43 276.4 19.0 331 56-404 6-370 (641)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 7.9E-37 1.7E-41 281.0 30.4 293 72-380 1-357 (357)
73 TIGR00963 secA preprotein tran 100.0 5.5E-37 1.2E-41 294.1 28.6 318 65-397 54-519 (745)
74 KOG0952 DNA/RNA helicase MER3/ 100.0 2.3E-37 5E-42 296.5 22.5 332 64-407 106-503 (1230)
75 KOG0349 Putative DEAD-box RNA 100.0 2.2E-37 4.9E-42 270.4 20.5 301 115-419 287-670 (725)
76 TIGR00603 rad25 DNA repair hel 100.0 2.4E-36 5.1E-41 291.7 28.1 309 68-401 255-613 (732)
77 KOG0354 DEAD-box like helicase 100.0 3.5E-36 7.7E-41 284.8 27.5 320 65-393 59-527 (746)
78 KOG0353 ATP-dependent DNA heli 100.0 1.4E-36 3E-41 261.5 19.4 333 49-394 74-466 (695)
79 PRK11131 ATP-dependent RNA hel 100.0 6.4E-34 1.4E-38 288.1 29.4 297 71-394 77-410 (1294)
80 PRK05580 primosome assembly pr 100.0 1.3E-33 2.8E-38 278.6 30.8 311 68-397 144-551 (679)
81 PRK04914 ATP-dependent helicas 100.0 2E-33 4.3E-38 280.7 31.0 319 68-393 152-601 (956)
82 COG1061 SSL2 DNA or RNA helica 100.0 8.4E-33 1.8E-37 260.4 26.2 292 67-381 35-375 (442)
83 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-32 2.8E-37 261.3 25.3 310 65-395 295-723 (1248)
84 KOG0951 RNA helicase BRR2, DEA 100.0 5.6E-33 1.2E-37 269.9 22.8 320 65-394 306-701 (1674)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.1E-32 6.7E-37 277.0 28.4 299 74-394 73-403 (1283)
86 TIGR00595 priA primosomal prot 100.0 3.6E-32 7.9E-37 259.0 25.9 292 87-397 1-383 (505)
87 COG1200 RecG RecG-like helicas 100.0 2.8E-31 6E-36 248.1 31.1 325 51-396 245-592 (677)
88 PRK09694 helicase Cas3; Provis 100.0 1.3E-31 2.9E-36 266.1 30.0 312 67-384 285-664 (878)
89 cd00268 DEADc DEAD-box helicas 100.0 2E-31 4.4E-36 228.1 22.6 200 48-250 1-202 (203)
90 PRK13104 secA preprotein trans 100.0 1.3E-30 2.9E-35 253.8 27.6 316 68-397 82-589 (896)
91 KOG0948 Nuclear exosomal RNA h 100.0 1.6E-31 3.6E-36 248.0 19.4 320 68-406 129-550 (1041)
92 PRK12904 preprotein translocas 100.0 4.1E-30 8.9E-35 250.2 28.3 318 65-397 79-575 (830)
93 PRK12906 secA preprotein trans 100.0 3.4E-30 7.4E-35 249.7 25.8 318 65-397 78-555 (796)
94 PLN03142 Probable chromatin-re 100.0 9.7E-30 2.1E-34 255.2 25.9 332 68-409 169-614 (1033)
95 COG1197 Mfd Transcription-repa 100.0 8E-29 1.7E-33 244.3 30.1 321 51-394 577-912 (1139)
96 PRK12899 secA preprotein trans 100.0 5.3E-29 1.1E-33 242.2 28.1 148 49-203 65-228 (970)
97 COG4581 Superfamily II RNA hel 100.0 9.7E-30 2.1E-34 250.6 23.1 317 63-394 115-536 (1041)
98 COG4098 comFA Superfamily II D 100.0 8.9E-28 1.9E-32 204.8 29.3 311 68-405 97-425 (441)
99 PRK11448 hsdR type I restricti 100.0 4.1E-28 8.8E-33 248.2 29.6 306 68-382 413-800 (1123)
100 COG1643 HrpA HrpA-like helicas 100.0 2.3E-28 5E-33 239.5 25.0 307 70-394 52-386 (845)
101 KOG0926 DEAH-box RNA helicase 100.0 3.5E-28 7.6E-33 227.4 21.4 305 74-394 262-703 (1172)
102 KOG0922 DEAH-box RNA helicase 100.0 1.2E-27 2.6E-32 221.6 24.3 306 70-394 53-389 (674)
103 PRK13107 preprotein translocas 100.0 1.2E-27 2.7E-32 232.4 24.2 316 68-397 82-593 (908)
104 KOG0950 DNA polymerase theta/e 100.0 2.1E-27 4.5E-32 227.4 20.5 355 51-422 206-634 (1008)
105 KOG0385 Chromatin remodeling c 100.0 6.1E-27 1.3E-31 218.6 20.5 316 68-394 167-598 (971)
106 PF00270 DEAD: DEAD/DEAH box h 100.0 3.1E-27 6.7E-32 196.3 16.7 165 70-237 1-167 (169)
107 KOG0923 mRNA splicing factor A 99.9 1E-26 2.3E-31 213.7 19.0 327 68-414 265-622 (902)
108 COG1203 CRISPR-associated heli 99.9 5.6E-26 1.2E-30 226.8 21.9 323 68-395 195-550 (733)
109 KOG0920 ATP-dependent RNA heli 99.9 1.2E-25 2.7E-30 219.4 22.4 316 68-395 173-544 (924)
110 COG1110 Reverse gyrase [DNA re 99.9 1.7E-24 3.6E-29 208.8 28.8 287 60-366 74-416 (1187)
111 KOG0924 mRNA splicing factor A 99.9 7.3E-26 1.6E-30 208.7 17.8 309 68-394 356-696 (1042)
112 COG1198 PriA Primosomal protei 99.9 2.9E-25 6.3E-30 214.6 22.4 317 68-402 198-610 (730)
113 KOG0387 Transcription-coupled 99.9 1.5E-24 3.1E-29 203.7 21.7 328 68-406 205-671 (923)
114 PRK12900 secA preprotein trans 99.9 6.3E-24 1.4E-28 207.6 20.9 126 270-397 578-713 (1025)
115 TIGR00631 uvrb excinuclease AB 99.9 9.9E-23 2.1E-27 199.1 28.6 108 287-395 441-553 (655)
116 KOG0389 SNF2 family DNA-depend 99.9 9.2E-24 2E-28 198.1 19.8 330 68-406 399-899 (941)
117 TIGR00348 hsdR type I site-spe 99.9 1.1E-22 2.4E-27 201.2 28.2 299 68-382 238-634 (667)
118 COG0556 UvrB Helicase subunit 99.9 1.6E-22 3.5E-27 182.5 26.0 165 222-394 386-556 (663)
119 TIGR01407 dinG_rel DnaQ family 99.9 4.8E-22 1E-26 202.8 32.9 347 54-409 232-829 (850)
120 KOG1123 RNA polymerase II tran 99.9 3.9E-24 8.4E-29 191.1 14.0 292 67-383 301-635 (776)
121 KOG0384 Chromodomain-helicase 99.9 1.2E-24 2.5E-29 212.8 11.4 330 67-408 369-825 (1373)
122 PRK12326 preprotein translocas 99.9 2.7E-22 5.9E-27 191.0 26.7 317 65-396 76-548 (764)
123 COG4096 HsdR Type I site-speci 99.9 3.4E-23 7.5E-28 196.7 20.3 293 68-381 165-524 (875)
124 KOG0392 SNF2 family DNA-depend 99.9 3.7E-22 8.1E-27 194.9 20.1 328 68-407 975-1466(1549)
125 PRK05298 excinuclease ABC subu 99.9 7.8E-21 1.7E-25 187.4 28.5 132 287-419 445-589 (652)
126 KOG0925 mRNA splicing factor A 99.9 4.4E-22 9.6E-27 177.4 17.7 326 45-394 24-386 (699)
127 KOG0949 Predicted helicase, DE 99.9 1.1E-21 2.4E-26 187.8 21.1 161 68-235 511-674 (1330)
128 KOG0390 DNA repair protein, SN 99.9 7.6E-21 1.7E-25 183.1 25.9 316 68-391 238-701 (776)
129 PRK13103 secA preprotein trans 99.9 3.7E-21 7.9E-26 187.8 23.9 315 68-397 82-593 (913)
130 KOG1000 Chromatin remodeling p 99.9 1.2E-20 2.7E-25 168.6 21.6 326 67-408 197-617 (689)
131 smart00487 DEXDc DEAD-like hel 99.9 9.5E-21 2.1E-25 161.8 20.3 187 64-253 4-191 (201)
132 PRK12903 secA preprotein trans 99.9 5.4E-20 1.2E-24 177.9 25.4 316 65-396 76-540 (925)
133 PRK07246 bifunctional ATP-depe 99.9 2.5E-19 5.5E-24 180.3 30.1 332 65-410 243-799 (820)
134 COG4889 Predicted helicase [Ge 99.9 5.4E-22 1.2E-26 188.0 9.9 328 47-382 141-572 (1518)
135 TIGR03117 cas_csf4 CRISPR-asso 99.8 4.8E-18 1E-22 163.7 32.1 126 279-407 462-628 (636)
136 KOG4150 Predicted ATP-dependen 99.8 1.4E-20 3E-25 171.0 13.4 361 57-421 275-667 (1034)
137 CHL00122 secA preprotein trans 99.8 7.6E-19 1.6E-23 171.0 24.4 129 65-203 74-209 (870)
138 KOG0953 Mitochondrial RNA heli 99.8 9.9E-20 2.1E-24 165.1 15.7 279 85-412 193-489 (700)
139 KOG1002 Nucleotide excision re 99.8 5.2E-19 1.1E-23 158.3 19.9 121 287-407 637-761 (791)
140 PRK08074 bifunctional ATP-depe 99.8 6.5E-18 1.4E-22 173.3 30.8 123 287-409 751-908 (928)
141 KOG0391 SNF2 family DNA-depend 99.8 4.2E-19 9E-24 172.6 20.6 120 275-394 1261-1386(1958)
142 cd00079 HELICc Helicase superf 99.8 2.3E-19 4.9E-24 142.2 14.9 118 274-391 12-131 (131)
143 KOG0386 Chromatin remodeling c 99.8 1.3E-19 2.9E-24 174.5 12.0 317 68-393 394-834 (1157)
144 PRK12902 secA preprotein trans 99.8 2.9E-17 6.3E-22 159.8 25.4 127 68-203 85-218 (939)
145 KOG0388 SNF2 family DNA-depend 99.8 6.8E-19 1.5E-23 163.7 13.0 122 274-395 1028-1154(1185)
146 PF00271 Helicase_C: Helicase 99.8 2.7E-19 5.8E-24 127.4 7.8 78 306-383 1-78 (78)
147 KOG0951 RNA helicase BRR2, DEA 99.8 5.7E-17 1.2E-21 159.6 20.5 313 68-401 1143-1500(1674)
148 cd00046 DEXDc DEAD-like helica 99.8 3.7E-17 8E-22 131.4 15.6 144 84-232 1-144 (144)
149 KOG4439 RNA polymerase II tran 99.7 7.2E-17 1.6E-21 150.4 16.1 120 287-406 745-869 (901)
150 COG1199 DinG Rad3-related DNA 99.7 9.8E-16 2.1E-20 153.9 25.8 129 278-410 470-633 (654)
151 PF04851 ResIII: Type III rest 99.7 3.9E-17 8.5E-22 137.5 13.2 155 68-234 3-184 (184)
152 TIGR00604 rad3 DNA repair heli 99.7 7.5E-15 1.6E-19 147.5 27.8 74 65-138 7-84 (705)
153 PRK11747 dinG ATP-dependent DN 99.7 4.3E-14 9.3E-19 140.9 31.7 117 288-408 534-688 (697)
154 PRK12901 secA preprotein trans 99.7 1.4E-15 3E-20 149.9 20.2 125 271-397 609-743 (1112)
155 PRK14873 primosome assembly pr 99.7 2.7E-16 6E-21 153.7 15.2 139 87-239 164-310 (665)
156 TIGR02562 cas3_yersinia CRISPR 99.7 6.6E-15 1.4E-19 145.8 20.9 310 68-384 408-881 (1110)
157 smart00490 HELICc helicase sup 99.7 3.2E-16 7E-21 113.0 8.1 81 303-383 2-82 (82)
158 PF02399 Herpes_ori_bp: Origin 99.6 9.4E-14 2E-18 134.3 20.3 288 85-394 51-387 (824)
159 COG0553 HepA Superfamily II DN 99.6 3.1E-14 6.7E-19 148.8 18.3 322 67-396 337-823 (866)
160 PF06862 DUF1253: Protein of u 99.5 1.2E-11 2.7E-16 113.8 26.1 229 167-397 132-417 (442)
161 COG0610 Type I site-specific r 99.5 5E-12 1.1E-16 129.6 23.6 297 84-393 274-651 (962)
162 PF07652 Flavi_DEAD: Flaviviru 99.5 6.4E-13 1.4E-17 101.8 10.9 136 83-236 4-140 (148)
163 KOG1015 Transcription regulato 99.5 3.8E-12 8.3E-17 122.9 18.5 115 277-391 1129-1271(1567)
164 COG0653 SecA Preprotein transl 99.4 6.9E-12 1.5E-16 122.4 17.8 313 68-394 80-544 (822)
165 PF00176 SNF2_N: SNF2 family N 99.4 2.3E-12 4.9E-17 117.4 11.5 157 72-235 1-175 (299)
166 KOG2340 Uncharacterized conser 99.2 4.1E-10 8.8E-15 102.8 16.1 327 67-395 215-668 (698)
167 KOG1016 Predicted DNA helicase 99.2 3.4E-09 7.3E-14 101.0 22.4 105 288-392 719-844 (1387)
168 KOG0921 Dosage compensation co 99.2 4.6E-11 1E-15 115.1 9.5 311 73-393 383-772 (1282)
169 smart00488 DEXDc2 DEAD-like he 99.2 2.6E-10 5.6E-15 101.9 12.4 70 68-137 8-84 (289)
170 smart00489 DEXDc3 DEAD-like he 99.2 2.6E-10 5.6E-15 101.9 12.4 70 68-137 8-84 (289)
171 PF07517 SecA_DEAD: SecA DEAD- 99.1 2.3E-09 4.9E-14 93.1 13.3 127 68-203 77-210 (266)
172 KOG0952 DNA/RNA helicase MER3/ 99.0 6.4E-11 1.4E-15 116.1 -1.2 260 68-339 927-1206(1230)
173 KOG1133 Helicase of the DEAD s 98.9 4.9E-07 1.1E-11 85.9 23.5 113 279-395 621-780 (821)
174 KOG1001 Helicase-like transcri 98.9 6.8E-09 1.5E-13 101.7 9.2 102 289-390 540-643 (674)
175 COG3587 Restriction endonuclea 98.9 1E-07 2.2E-12 92.5 16.4 74 337-410 482-567 (985)
176 PRK15483 type III restriction- 98.8 4.4E-08 9.6E-13 98.4 13.0 74 338-411 501-583 (986)
177 TIGR00596 rad1 DNA repair prot 98.7 5.6E-07 1.2E-11 90.5 16.7 66 168-234 9-74 (814)
178 PF13307 Helicase_C_2: Helicas 98.7 7.6E-08 1.6E-12 78.9 7.7 112 281-395 3-150 (167)
179 PF13086 AAA_11: AAA domain; P 98.6 1.7E-07 3.7E-12 82.0 9.5 68 68-136 1-75 (236)
180 PF13604 AAA_30: AAA domain; P 98.6 2.7E-07 5.9E-12 77.7 8.8 123 68-231 1-130 (196)
181 KOG1802 RNA helicase nonsense 98.5 3.6E-07 7.7E-12 86.3 8.9 86 59-151 401-486 (935)
182 PF02562 PhoH: PhoH-like prote 98.5 7.7E-07 1.7E-11 74.3 9.0 143 67-231 3-155 (205)
183 PF13872 AAA_34: P-loop contai 98.5 1.1E-06 2.4E-11 76.7 10.0 159 69-237 38-225 (303)
184 PF12340 DUF3638: Protein of u 98.4 1.5E-06 3.3E-11 73.1 9.0 133 68-204 23-186 (229)
185 KOG1131 RNA polymerase II tran 98.4 4.9E-05 1.1E-09 70.3 18.3 72 66-137 14-90 (755)
186 KOG1803 DNA helicase [Replicat 98.3 3.8E-06 8.2E-11 79.0 9.6 65 67-134 184-249 (649)
187 PF09848 DUF2075: Uncharacteri 98.2 7.9E-06 1.7E-10 75.8 9.7 109 85-218 3-117 (352)
188 TIGR01448 recD_rel helicase, p 98.2 1.7E-05 3.7E-10 80.1 12.5 126 67-231 322-452 (720)
189 PRK10536 hypothetical protein; 98.2 6E-05 1.3E-09 64.9 13.7 140 65-228 56-209 (262)
190 TIGR01447 recD exodeoxyribonuc 98.2 1.9E-05 4.1E-10 77.5 12.0 139 71-230 148-294 (586)
191 PRK10875 recD exonuclease V su 98.2 1.5E-05 3.1E-10 78.4 10.9 140 70-231 154-301 (615)
192 PF13245 AAA_19: Part of AAA d 98.2 6.4E-06 1.4E-10 57.2 5.9 58 76-134 2-62 (76)
193 smart00492 HELICc3 helicase su 98.0 4.6E-05 1E-09 60.1 9.0 94 301-394 4-137 (141)
194 KOG1132 Helicase of the DEAD s 97.9 3.2E-05 6.9E-10 76.0 8.4 106 288-394 561-721 (945)
195 smart00491 HELICc2 helicase su 97.9 5.1E-05 1.1E-09 60.0 7.9 95 300-394 3-138 (142)
196 COG3421 Uncharacterized protei 97.9 7.3E-05 1.6E-09 70.4 10.0 145 88-235 2-168 (812)
197 KOG0383 Predicted helicase [Ge 97.9 8.7E-07 1.9E-11 86.2 -3.9 64 287-351 630-696 (696)
198 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00027 5.9E-09 71.8 13.5 60 68-130 352-412 (744)
199 KOG1805 DNA replication helica 97.8 0.0001 2.2E-09 73.3 9.3 138 51-204 656-810 (1100)
200 PRK13889 conjugal transfer rel 97.8 0.00029 6.4E-09 72.8 12.9 123 68-231 346-470 (988)
201 COG1875 NYN ribonuclease and A 97.8 7.5E-05 1.6E-09 66.4 6.9 146 65-229 225-385 (436)
202 PF00580 UvrD-helicase: UvrD/R 97.8 5.7E-05 1.2E-09 69.2 6.5 122 69-200 1-125 (315)
203 PRK13826 Dtr system oriT relax 97.7 0.00052 1.1E-08 71.5 13.5 138 52-231 366-505 (1102)
204 KOG0989 Replication factor C, 97.7 0.00012 2.6E-09 63.6 7.2 48 185-234 124-171 (346)
205 PRK04296 thymidine kinase; Pro 97.6 0.00011 2.3E-09 61.8 5.5 37 84-123 3-39 (190)
206 KOG0298 DEAD box-containing he 97.6 0.00025 5.4E-09 72.6 8.5 148 83-238 374-556 (1394)
207 PF14617 CMS1: U3-containing 9 97.5 0.00034 7.5E-09 60.3 7.4 88 111-200 123-211 (252)
208 PRK14974 cell division protein 97.5 0.00064 1.4E-08 61.9 9.4 55 190-244 222-276 (336)
209 PF13871 Helicase_C_4: Helicas 97.5 0.00039 8.4E-09 60.8 7.4 80 329-408 52-142 (278)
210 COG1419 FlhF Flagellar GTP-bin 97.5 0.0023 5E-08 58.6 12.4 133 83-244 203-336 (407)
211 PF13401 AAA_22: AAA domain; P 97.4 0.00033 7.2E-09 54.9 5.9 19 83-101 4-22 (131)
212 PRK12723 flagellar biosynthesi 97.4 0.0012 2.7E-08 61.2 10.4 121 84-235 175-300 (388)
213 TIGR00376 DNA helicase, putati 97.4 0.00046 9.9E-09 68.8 8.1 66 68-136 157-223 (637)
214 PRK08181 transposase; Validate 97.4 0.0019 4.2E-08 56.9 10.7 21 81-101 104-124 (269)
215 PRK11889 flhF flagellar biosyn 97.4 0.0028 6.2E-08 58.2 11.6 130 84-244 242-375 (436)
216 PRK14722 flhF flagellar biosyn 97.3 0.0012 2.6E-08 60.8 8.6 132 83-243 137-269 (374)
217 cd00009 AAA The AAA+ (ATPases 97.3 0.0033 7.1E-08 50.1 10.4 17 83-99 19-35 (151)
218 PF00448 SRP54: SRP54-type pro 97.3 0.0016 3.4E-08 54.8 8.4 55 189-243 82-136 (196)
219 smart00382 AAA ATPases associa 97.2 0.0013 2.8E-08 52.0 7.6 41 83-126 2-42 (148)
220 PRK06526 transposase; Provisio 97.2 0.00073 1.6E-08 59.2 6.3 24 79-102 94-117 (254)
221 TIGR02760 TraI_TIGR conjugativ 97.2 0.032 7E-07 62.9 20.0 235 68-337 429-685 (1960)
222 PF05970 PIF1: PIF1-like helic 97.2 0.0012 2.7E-08 61.5 7.9 60 68-130 1-66 (364)
223 PRK05703 flhF flagellar biosyn 97.1 0.0077 1.7E-07 57.1 12.5 129 83-243 221-354 (424)
224 PRK10919 ATP-dependent DNA hel 97.0 0.00094 2E-08 67.4 5.8 70 68-139 2-72 (672)
225 KOG1513 Nuclear helicase MOP-3 97.0 0.00079 1.7E-08 65.7 4.9 159 67-232 263-454 (1300)
226 PRK05642 DNA replication initi 97.0 0.0019 4.1E-08 56.2 6.8 44 190-233 97-140 (234)
227 PF05127 Helicase_RecD: Helica 97.0 0.00098 2.1E-08 54.4 4.3 124 87-233 1-124 (177)
228 PRK14712 conjugal transfer nic 96.9 0.0058 1.3E-07 66.1 10.6 62 68-130 835-900 (1623)
229 PRK13709 conjugal transfer nic 96.9 0.0076 1.7E-07 66.1 11.6 63 67-130 966-1032(1747)
230 PRK11054 helD DNA helicase IV; 96.9 0.0054 1.2E-07 61.7 9.7 82 67-151 195-277 (684)
231 PHA02533 17 large terminase pr 96.9 0.013 2.8E-07 57.1 12.1 75 68-143 59-133 (534)
232 PF03354 Terminase_1: Phage Te 96.9 0.0049 1.1E-07 59.8 9.1 74 71-144 1-84 (477)
233 PRK06893 DNA replication initi 96.8 0.0034 7.3E-08 54.4 6.9 47 189-235 90-137 (229)
234 PF13177 DNA_pol3_delta2: DNA 96.8 0.0049 1.1E-07 50.2 7.2 44 189-234 101-144 (162)
235 PRK05707 DNA polymerase III su 96.8 0.01 2.2E-07 54.3 9.8 138 68-231 3-145 (328)
236 PRK14956 DNA polymerase III su 96.8 0.0053 1.1E-07 58.3 8.1 22 84-105 41-62 (484)
237 PRK08084 DNA replication initi 96.8 0.0038 8.3E-08 54.3 6.8 18 83-100 45-62 (235)
238 TIGR01075 uvrD DNA helicase II 96.8 0.002 4.4E-08 65.9 5.7 71 67-139 3-74 (715)
239 PF05876 Terminase_GpA: Phage 96.7 0.0045 9.8E-08 60.9 7.6 127 68-204 16-148 (557)
240 PRK11773 uvrD DNA-dependent he 96.7 0.0025 5.4E-08 65.1 5.9 81 68-150 9-91 (721)
241 PRK12402 replication factor C 96.6 0.015 3.3E-07 53.8 9.9 40 189-230 124-163 (337)
242 PF00308 Bac_DnaA: Bacterial d 96.6 0.0072 1.6E-07 51.9 6.9 48 189-236 96-144 (219)
243 PRK08727 hypothetical protein; 96.5 0.012 2.6E-07 51.2 8.1 47 190-236 93-140 (233)
244 TIGR01074 rep ATP-dependent DN 96.5 0.007 1.5E-07 61.6 7.6 69 69-139 2-71 (664)
245 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.011 2.3E-07 51.3 7.7 19 83-101 38-56 (226)
246 PRK06731 flhF flagellar biosyn 96.5 0.05 1.1E-06 48.1 11.7 131 83-244 75-209 (270)
247 PRK12323 DNA polymerase III su 96.5 0.011 2.5E-07 57.9 8.3 41 189-231 123-163 (700)
248 PRK07952 DNA replication prote 96.5 0.018 3.8E-07 50.1 8.7 43 188-231 160-204 (244)
249 PRK14873 primosome assembly pr 96.5 0.045 9.7E-07 54.9 12.5 127 273-402 171-309 (665)
250 PRK00771 signal recognition pa 96.4 0.038 8.3E-07 52.4 11.3 52 192-243 177-228 (437)
251 cd01120 RecA-like_NTPases RecA 96.4 0.022 4.7E-07 46.2 8.7 38 86-126 2-39 (165)
252 PRK14087 dnaA chromosomal repl 96.4 0.0078 1.7E-07 57.6 6.8 47 84-132 142-188 (450)
253 PRK13833 conjugal transfer pro 96.4 0.0082 1.8E-07 54.4 6.5 65 59-126 121-186 (323)
254 PRK08769 DNA polymerase III su 96.4 0.02 4.4E-07 51.9 8.9 142 67-232 3-153 (319)
255 PRK07003 DNA polymerase III su 96.4 0.017 3.8E-07 57.6 9.0 39 189-229 118-156 (830)
256 PRK14958 DNA polymerase III su 96.4 0.029 6.2E-07 54.6 10.4 39 189-229 118-156 (509)
257 PRK13894 conjugal transfer ATP 96.4 0.0086 1.9E-07 54.4 6.4 67 57-126 123-190 (319)
258 PRK14964 DNA polymerase III su 96.4 0.057 1.2E-06 51.9 12.2 39 189-229 115-153 (491)
259 PTZ00112 origin recognition co 96.3 0.077 1.7E-06 53.9 13.0 16 86-101 784-799 (1164)
260 PRK14723 flhF flagellar biosyn 96.3 0.023 5E-07 57.2 9.6 131 84-243 186-317 (767)
261 TIGR02760 TraI_TIGR conjugativ 96.3 0.019 4.1E-07 64.7 9.8 62 67-130 1018-1084(1960)
262 PRK14949 DNA polymerase III su 96.3 0.02 4.4E-07 58.3 9.0 38 189-228 118-155 (944)
263 KOG0733 Nuclear AAA ATPase (VC 96.3 0.027 5.8E-07 54.2 9.2 61 36-99 498-561 (802)
264 PLN03025 replication factor C 96.3 0.044 9.6E-07 50.2 10.7 38 190-229 99-136 (319)
265 PF13173 AAA_14: AAA domain 96.3 0.063 1.4E-06 41.7 10.1 38 190-231 61-98 (128)
266 PRK14952 DNA polymerase III su 96.3 0.038 8.3E-07 54.4 10.7 39 189-229 117-155 (584)
267 PRK07764 DNA polymerase III su 96.3 0.02 4.4E-07 58.7 9.0 39 189-229 119-157 (824)
268 TIGR00362 DnaA chromosomal rep 96.3 0.015 3.3E-07 55.2 7.8 37 84-121 137-173 (405)
269 COG1435 Tdk Thymidine kinase [ 96.3 0.04 8.7E-07 45.2 8.9 91 84-203 5-95 (201)
270 PRK14721 flhF flagellar biosyn 96.3 0.061 1.3E-06 50.6 11.4 132 83-243 191-323 (420)
271 PRK12422 chromosomal replicati 96.2 0.023 5.1E-07 54.2 8.8 50 189-238 201-251 (445)
272 PRK14951 DNA polymerase III su 96.2 0.022 4.8E-07 56.3 8.7 39 189-229 123-161 (618)
273 cd01124 KaiC KaiC is a circadi 96.2 0.012 2.6E-07 49.2 6.1 48 86-137 2-49 (187)
274 PRK08116 hypothetical protein; 96.2 0.036 7.7E-07 49.2 9.2 43 84-130 115-157 (268)
275 PHA02544 44 clamp loader, smal 96.2 0.062 1.3E-06 49.2 11.1 39 190-229 100-138 (316)
276 TIGR02782 TrbB_P P-type conjug 96.2 0.017 3.7E-07 52.1 7.1 67 57-126 107-174 (299)
277 cd01122 GP4d_helicase GP4d_hel 96.2 0.024 5.1E-07 50.7 8.0 78 56-136 3-80 (271)
278 TIGR01073 pcrA ATP-dependent D 96.1 0.0087 1.9E-07 61.4 5.8 71 67-139 3-74 (726)
279 KOG0739 AAA+-type ATPase [Post 96.1 0.23 5E-06 43.7 13.2 80 45-137 129-213 (439)
280 PRK14960 DNA polymerase III su 96.1 0.025 5.4E-07 55.8 8.4 39 189-229 117-155 (702)
281 PRK00149 dnaA chromosomal repl 96.1 0.021 4.6E-07 55.0 7.9 44 84-129 149-192 (450)
282 PRK12377 putative replication 96.1 0.041 8.9E-07 48.0 8.9 45 83-131 101-145 (248)
283 PTZ00293 thymidine kinase; Pro 96.1 0.022 4.8E-07 47.9 6.9 40 83-125 4-43 (211)
284 PRK08691 DNA polymerase III su 96.1 0.054 1.2E-06 53.9 10.6 39 189-229 118-156 (709)
285 PRK12727 flagellar biosynthesi 96.1 0.18 3.8E-06 48.7 13.5 20 83-102 350-369 (559)
286 PHA03372 DNA packaging termina 96.1 0.088 1.9E-06 51.0 11.4 127 84-231 203-336 (668)
287 PRK14963 DNA polymerase III su 96.0 0.042 9.2E-07 53.3 9.6 18 85-102 38-55 (504)
288 TIGR01425 SRP54_euk signal rec 96.0 0.043 9.4E-07 51.6 9.3 18 85-102 102-119 (429)
289 COG1484 DnaC DNA replication p 96.0 0.027 5.9E-07 49.5 7.5 49 82-134 104-152 (254)
290 KOG0991 Replication factor C, 96.0 0.011 2.4E-07 49.6 4.7 38 189-228 112-149 (333)
291 COG2804 PulE Type II secretory 96.0 0.01 2.2E-07 56.0 4.9 42 70-112 243-286 (500)
292 PRK06921 hypothetical protein; 96.0 0.023 5.1E-07 50.3 7.0 44 83-129 117-160 (266)
293 PRK07471 DNA polymerase III su 96.0 0.048 1E-06 50.7 9.2 43 188-232 139-181 (365)
294 PHA03368 DNA packaging termina 96.0 0.04 8.8E-07 54.0 8.9 135 83-232 254-390 (738)
295 PRK05580 primosome assembly pr 96.0 0.15 3.3E-06 51.8 13.5 76 288-364 190-266 (679)
296 COG4962 CpaF Flp pilus assembl 96.0 0.016 3.5E-07 51.9 5.8 59 65-127 154-213 (355)
297 PRK12726 flagellar biosynthesi 96.0 0.043 9.2E-07 50.5 8.6 22 83-104 206-227 (407)
298 PHA03333 putative ATPase subun 95.9 0.12 2.6E-06 51.0 12.0 68 70-139 171-241 (752)
299 PRK06835 DNA replication prote 95.9 0.024 5.3E-07 51.7 7.0 44 83-130 183-226 (329)
300 TIGR00064 ftsY signal recognit 95.9 0.12 2.6E-06 46.0 11.1 55 189-243 153-213 (272)
301 PRK06995 flhF flagellar biosyn 95.9 0.055 1.2E-06 51.8 9.5 22 83-104 256-277 (484)
302 PRK14086 dnaA chromosomal repl 95.9 0.12 2.5E-06 50.9 11.7 48 189-236 376-424 (617)
303 TIGR01547 phage_term_2 phage t 95.9 0.028 6.2E-07 53.3 7.6 138 86-235 4-143 (396)
304 PRK09111 DNA polymerase III su 95.8 0.048 1E-06 54.0 9.1 40 188-229 130-169 (598)
305 TIGR02881 spore_V_K stage V sp 95.8 0.047 1E-06 48.4 8.3 18 84-101 43-60 (261)
306 PRK08903 DnaA regulatory inact 95.8 0.037 8E-07 48.0 7.5 17 83-99 42-58 (227)
307 TIGR02785 addA_Gpos recombinat 95.8 0.02 4.4E-07 62.1 6.8 123 69-201 2-126 (1232)
308 PRK06871 DNA polymerase III su 95.8 0.075 1.6E-06 48.3 9.4 41 189-231 106-146 (325)
309 PRK09112 DNA polymerase III su 95.8 0.051 1.1E-06 50.2 8.4 41 189-231 140-180 (351)
310 PF00004 AAA: ATPase family as 95.7 0.015 3.2E-07 45.4 4.4 15 86-100 1-15 (132)
311 COG1444 Predicted P-loop ATPas 95.7 0.063 1.4E-06 53.7 9.3 150 59-233 205-357 (758)
312 PF06745 KaiC: KaiC; InterPro 95.7 0.01 2.2E-07 51.5 3.6 52 82-137 18-70 (226)
313 COG3973 Superfamily I DNA and 95.7 0.038 8.3E-07 53.0 7.4 87 52-138 188-284 (747)
314 PRK09183 transposase/IS protei 95.7 0.068 1.5E-06 47.2 8.7 22 80-101 99-120 (259)
315 PRK14961 DNA polymerase III su 95.7 0.042 9.2E-07 51.3 7.8 39 189-229 118-156 (363)
316 PRK12724 flagellar biosynthesi 95.7 0.14 3E-06 48.0 10.9 126 85-243 225-356 (432)
317 PRK14962 DNA polymerase III su 95.7 0.066 1.4E-06 51.5 9.1 20 84-103 37-56 (472)
318 PRK00440 rfc replication facto 95.6 0.15 3.2E-06 46.7 11.2 38 190-229 102-139 (319)
319 PRK08699 DNA polymerase III su 95.6 0.1 2.3E-06 47.6 9.9 145 69-231 2-152 (325)
320 PRK06645 DNA polymerase III su 95.6 0.054 1.2E-06 52.5 8.4 21 84-104 44-64 (507)
321 PRK10917 ATP-dependent DNA hel 95.6 0.071 1.5E-06 54.2 9.7 76 287-362 309-389 (681)
322 PRK14969 DNA polymerase III su 95.6 0.11 2.4E-06 50.9 10.6 39 189-229 118-156 (527)
323 PRK14088 dnaA chromosomal repl 95.6 0.081 1.8E-06 50.7 9.5 38 84-122 131-168 (440)
324 PRK07994 DNA polymerase III su 95.6 0.05 1.1E-06 54.1 8.2 38 189-228 118-155 (647)
325 PF05621 TniB: Bacterial TniB 95.6 0.054 1.2E-06 48.1 7.5 39 190-228 145-186 (302)
326 PRK00411 cdc6 cell division co 95.6 0.07 1.5E-06 50.6 9.1 36 84-120 56-91 (394)
327 PRK14957 DNA polymerase III su 95.6 0.072 1.6E-06 52.0 9.1 39 189-229 118-156 (546)
328 TIGR00595 priA primosomal prot 95.6 0.097 2.1E-06 51.1 10.0 76 287-363 24-100 (505)
329 PRK05563 DNA polymerase III su 95.6 0.13 2.9E-06 50.8 11.0 22 83-104 38-59 (559)
330 PRK14955 DNA polymerase III su 95.6 0.047 1E-06 51.6 7.6 40 188-229 125-164 (397)
331 PRK08451 DNA polymerase III su 95.5 0.086 1.9E-06 51.3 9.4 40 188-229 115-154 (535)
332 PRK06964 DNA polymerase III su 95.5 0.11 2.5E-06 47.6 9.7 42 188-231 130-171 (342)
333 PF05496 RuvB_N: Holliday junc 95.5 0.11 2.3E-06 44.2 8.7 45 45-101 20-68 (233)
334 PRK05973 replicative DNA helic 95.5 0.032 6.9E-07 48.2 5.7 65 68-137 50-114 (237)
335 PRK14959 DNA polymerase III su 95.4 0.061 1.3E-06 53.1 8.0 21 84-104 39-59 (624)
336 PRK14954 DNA polymerase III su 95.4 0.055 1.2E-06 53.8 7.6 40 188-229 125-164 (620)
337 CHL00181 cbbX CbbX; Provisiona 95.3 0.13 2.8E-06 46.2 9.3 20 83-102 59-78 (287)
338 COG0470 HolB ATPase involved i 95.3 0.067 1.4E-06 49.2 7.8 41 188-230 107-147 (325)
339 PRK08533 flagellar accessory p 95.3 0.24 5.3E-06 42.9 10.6 53 81-137 22-74 (230)
340 PRK14965 DNA polymerase III su 95.3 0.12 2.5E-06 51.4 9.6 39 189-229 118-156 (576)
341 cd00984 DnaB_C DnaB helicase C 95.3 0.11 2.4E-06 45.5 8.5 41 80-122 10-50 (242)
342 TIGR03600 phage_DnaB phage rep 95.2 0.17 3.6E-06 48.5 10.3 123 74-204 185-319 (421)
343 PRK13851 type IV secretion sys 95.2 0.032 7E-07 51.2 5.1 43 80-126 159-201 (344)
344 PRK05896 DNA polymerase III su 95.2 0.081 1.8E-06 52.0 8.0 39 189-229 118-156 (605)
345 TIGR03015 pepcterm_ATPase puta 95.2 0.6 1.3E-05 41.5 13.2 34 68-101 23-61 (269)
346 COG2256 MGS1 ATPase related to 95.1 0.11 2.4E-06 47.6 8.0 18 84-101 49-66 (436)
347 PRK11331 5-methylcytosine-spec 95.1 0.067 1.5E-06 50.5 7.0 33 69-101 180-212 (459)
348 PRK14948 DNA polymerase III su 95.1 0.11 2.3E-06 51.9 8.8 20 84-103 39-58 (620)
349 COG3972 Superfamily I DNA and 95.1 0.15 3.2E-06 48.0 8.8 79 57-138 152-230 (660)
350 TIGR00678 holB DNA polymerase 95.1 0.062 1.3E-06 45.0 6.2 40 188-229 94-133 (188)
351 PRK06090 DNA polymerase III su 95.1 0.11 2.4E-06 47.2 8.0 43 188-232 106-148 (319)
352 PRK10416 signal recognition pa 95.0 0.57 1.2E-05 42.7 12.5 55 189-243 195-255 (318)
353 COG2909 MalT ATP-dependent tra 95.0 0.34 7.3E-06 48.9 11.6 42 192-234 131-172 (894)
354 COG0552 FtsY Signal recognitio 95.0 0.59 1.3E-05 42.0 12.1 130 86-243 142-280 (340)
355 TIGR03499 FlhF flagellar biosy 95.0 0.064 1.4E-06 48.1 6.3 21 84-104 195-215 (282)
356 COG1198 PriA Primosomal protei 95.0 0.13 2.8E-06 51.8 8.8 92 270-362 225-319 (730)
357 PRK13900 type IV secretion sys 95.0 0.078 1.7E-06 48.6 6.9 41 82-126 159-199 (332)
358 COG1110 Reverse gyrase [DNA re 94.9 0.11 2.4E-06 53.1 8.2 71 277-347 114-190 (1187)
359 PRK04195 replication factor C 94.9 0.13 2.8E-06 50.1 8.5 19 83-101 39-57 (482)
360 COG1474 CDC6 Cdc6-related prot 94.8 0.38 8.2E-06 44.8 11.1 25 84-109 43-67 (366)
361 PRK07993 DNA polymerase III su 94.8 0.1 2.2E-06 47.9 7.2 137 69-231 3-147 (334)
362 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.35 7.6E-06 41.9 10.3 51 82-136 19-69 (229)
363 TIGR00643 recG ATP-dependent D 94.8 0.13 2.8E-06 51.9 8.6 76 287-362 283-363 (630)
364 PRK07940 DNA polymerase III su 94.8 0.25 5.4E-06 46.4 9.8 41 189-231 116-156 (394)
365 PRK07133 DNA polymerase III su 94.8 0.1 2.2E-06 52.4 7.6 39 189-229 117-155 (725)
366 cd01126 TraG_VirD4 The TraG/Tr 94.8 0.04 8.7E-07 52.0 4.6 47 85-136 1-47 (384)
367 PRK14950 DNA polymerase III su 94.7 0.13 2.8E-06 51.3 8.3 20 84-103 39-58 (585)
368 cd03115 SRP The signal recogni 94.7 0.42 9E-06 39.3 10.2 19 86-104 3-21 (173)
369 PF05707 Zot: Zonular occluden 94.7 0.15 3.2E-06 42.9 7.5 52 190-242 79-135 (193)
370 COG2805 PilT Tfp pilus assembl 94.7 0.041 8.8E-07 48.3 4.0 27 86-113 128-154 (353)
371 cd01130 VirB11-like_ATPase Typ 94.7 0.082 1.8E-06 44.2 5.8 40 69-109 10-50 (186)
372 PRK13342 recombination factor 94.7 0.25 5.5E-06 47.1 9.8 18 84-101 37-54 (413)
373 PF03796 DnaB_C: DnaB-like hel 94.6 0.16 3.4E-06 45.1 7.8 116 81-204 17-144 (259)
374 PRK10867 signal recognition pa 94.6 0.44 9.6E-06 45.3 11.1 22 85-106 102-123 (433)
375 TIGR00763 lon ATP-dependent pr 94.6 0.3 6.4E-06 50.6 10.8 18 83-100 347-364 (775)
376 TIGR00959 ffh signal recogniti 94.5 0.4 8.6E-06 45.5 10.6 22 85-106 101-122 (428)
377 COG0378 HypB Ni2+-binding GTPa 94.5 1.6 3.5E-05 36.1 12.4 34 211-244 164-197 (202)
378 KOG2028 ATPase related to the 94.5 0.33 7.3E-06 43.9 9.2 16 85-100 164-179 (554)
379 TIGR00580 mfd transcription-re 94.5 0.2 4.2E-06 52.5 9.1 76 287-362 499-579 (926)
380 COG0593 DnaA ATPase involved i 94.5 0.13 2.8E-06 48.0 7.0 48 190-237 175-223 (408)
381 PRK10436 hypothetical protein; 94.4 0.062 1.3E-06 51.5 5.0 40 70-110 203-244 (462)
382 PRK06904 replicative DNA helic 94.4 0.41 9E-06 46.3 10.6 118 80-204 218-348 (472)
383 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.065 1.4E-06 46.7 4.8 52 82-137 20-71 (237)
384 PF05729 NACHT: NACHT domain 94.4 0.74 1.6E-05 37.2 10.9 17 85-101 2-18 (166)
385 PRK13341 recombination factor 94.4 0.25 5.5E-06 50.2 9.5 18 84-101 53-70 (725)
386 KOG1513 Nuclear helicase MOP-3 94.4 0.052 1.1E-06 53.7 4.3 78 332-409 851-939 (1300)
387 PRK06067 flagellar accessory p 94.3 0.5 1.1E-05 41.1 10.2 51 83-137 25-75 (234)
388 PF02534 T4SS-DNA_transf: Type 94.3 0.075 1.6E-06 51.7 5.4 49 84-137 45-93 (469)
389 cd01129 PulE-GspE PulE/GspE Th 94.3 0.098 2.1E-06 46.3 5.6 60 60-125 58-119 (264)
390 TIGR02525 plasmid_TraJ plasmid 94.2 0.09 2E-06 48.8 5.5 42 83-125 149-190 (372)
391 COG1132 MdlB ABC-type multidru 94.2 0.42 9E-06 47.8 10.5 37 80-119 352-388 (567)
392 PHA00729 NTP-binding motif con 94.1 0.4 8.7E-06 41.0 8.8 16 85-100 19-34 (226)
393 KOG0744 AAA+-type ATPase [Post 94.1 0.12 2.6E-06 45.9 5.7 16 83-98 177-192 (423)
394 COG4626 Phage terminase-like p 94.1 0.21 4.6E-06 47.9 7.8 74 68-141 61-145 (546)
395 TIGR02397 dnaX_nterm DNA polym 94.1 0.35 7.5E-06 45.1 9.4 18 84-101 37-54 (355)
396 KOG0730 AAA+-type ATPase [Post 94.1 0.25 5.5E-06 48.2 8.3 57 41-100 426-485 (693)
397 PRK07004 replicative DNA helic 94.1 0.17 3.7E-06 48.8 7.3 117 80-204 210-338 (460)
398 cd00561 CobA_CobO_BtuR ATP:cor 94.1 0.57 1.2E-05 37.7 9.1 136 86-240 5-146 (159)
399 PRK07399 DNA polymerase III su 94.0 0.36 7.8E-06 43.9 8.9 60 168-231 103-162 (314)
400 TIGR02868 CydC thiol reductant 94.0 0.47 1E-05 47.0 10.6 27 82-110 360-386 (529)
401 COG1197 Mfd Transcription-repa 94.0 1.4 2.9E-05 46.5 13.7 139 70-222 729-900 (1139)
402 PRK13897 type IV secretion sys 94.0 0.095 2.1E-06 51.9 5.5 49 84-137 159-207 (606)
403 KOG0344 ATP-dependent RNA heli 94.0 2.4 5.3E-05 40.9 14.3 98 92-200 366-466 (593)
404 PRK08006 replicative DNA helic 94.0 0.36 7.9E-06 46.6 9.3 119 78-203 219-349 (471)
405 PRK14953 DNA polymerase III su 93.9 0.45 9.8E-06 46.1 9.9 18 85-102 40-57 (486)
406 TIGR02533 type_II_gspE general 93.9 0.1 2.2E-06 50.6 5.4 40 70-110 227-268 (486)
407 PRK08506 replicative DNA helic 93.9 0.45 9.8E-06 46.1 9.8 114 82-204 191-316 (472)
408 KOG0742 AAA+-type ATPase [Post 93.9 0.13 2.8E-06 47.2 5.5 103 84-234 385-495 (630)
409 PRK08939 primosomal protein Dn 93.9 0.26 5.7E-06 44.6 7.7 18 83-100 156-173 (306)
410 KOG0738 AAA+-type ATPase [Post 93.8 0.27 5.8E-06 45.0 7.4 16 84-99 246-261 (491)
411 PRK06647 DNA polymerase III su 93.8 0.21 4.6E-06 49.3 7.5 19 84-102 39-57 (563)
412 PRK08840 replicative DNA helic 93.8 0.63 1.4E-05 44.9 10.5 132 65-203 199-342 (464)
413 PRK05748 replicative DNA helic 93.8 0.5 1.1E-05 45.6 9.9 115 81-203 201-327 (448)
414 PF01637 Arch_ATPase: Archaeal 93.8 0.16 3.4E-06 44.0 6.0 25 83-108 20-44 (234)
415 PF01695 IstB_IS21: IstB-like 93.7 0.095 2.1E-06 43.3 4.3 47 80-130 44-90 (178)
416 TIGR02928 orc1/cdc6 family rep 93.7 0.3 6.5E-06 45.8 8.2 17 84-100 41-57 (365)
417 TIGR00767 rho transcription te 93.7 0.22 4.8E-06 46.3 6.9 27 82-109 167-193 (415)
418 COG1702 PhoH Phosphate starvat 93.7 0.038 8.2E-07 49.5 1.9 56 66-122 126-181 (348)
419 KOG0732 AAA+-type ATPase conta 93.7 0.42 9.2E-06 49.7 9.4 60 39-99 255-315 (1080)
420 KOG0298 DEAD box-containing he 93.6 0.08 1.7E-06 55.1 4.3 96 288-387 1221-1316(1394)
421 PF00437 T2SE: Type II/IV secr 93.6 0.099 2.2E-06 46.6 4.6 42 82-126 126-167 (270)
422 PF03237 Terminase_6: Terminas 93.6 1.2 2.7E-05 41.6 12.3 43 87-129 1-43 (384)
423 PF01443 Viral_helicase1: Vira 93.6 0.086 1.9E-06 45.8 4.0 14 86-99 1-14 (234)
424 TIGR00665 DnaB replicative DNA 93.6 0.51 1.1E-05 45.4 9.6 114 82-204 194-319 (434)
425 PF03969 AFG1_ATPase: AFG1-lik 93.4 1.7 3.6E-05 40.5 12.2 110 83-236 62-172 (362)
426 PRK14971 DNA polymerase III su 93.4 0.44 9.6E-06 47.7 9.0 40 188-229 119-158 (614)
427 PRK10689 transcription-repair 93.4 0.29 6.3E-06 52.5 8.1 76 287-362 648-728 (1147)
428 PRK06305 DNA polymerase III su 93.4 0.49 1.1E-05 45.5 9.0 39 189-229 120-158 (451)
429 KOG0701 dsRNA-specific nucleas 93.4 0.051 1.1E-06 58.6 2.5 95 289-383 293-399 (1606)
430 TIGR03819 heli_sec_ATPase heli 93.3 0.22 4.8E-06 45.8 6.4 63 58-126 154-217 (340)
431 TIGR02538 type_IV_pilB type IV 93.3 0.13 2.8E-06 51.0 5.1 39 70-109 301-341 (564)
432 TIGR02858 spore_III_AA stage I 93.2 0.9 1.9E-05 40.3 9.7 25 75-99 100-127 (270)
433 cd01131 PilT Pilus retraction 93.2 0.1 2.2E-06 44.1 3.7 39 85-125 3-41 (198)
434 PRK05986 cob(I)alamin adenolsy 93.1 0.27 5.8E-06 40.8 5.8 145 82-241 21-167 (191)
435 PHA00012 I assembly protein 93.0 0.64 1.4E-05 41.8 8.4 26 86-111 4-29 (361)
436 PRK13850 type IV secretion sys 92.9 0.22 4.7E-06 50.1 6.0 48 84-136 140-187 (670)
437 PRK08058 DNA polymerase III su 92.9 0.44 9.4E-06 43.9 7.7 41 188-230 108-148 (329)
438 PRK04841 transcriptional regul 92.9 1.1 2.5E-05 47.6 11.9 42 192-234 123-164 (903)
439 TIGR03878 thermo_KaiC_2 KaiC d 92.7 0.25 5.3E-06 43.8 5.5 38 82-122 35-72 (259)
440 TIGR01243 CDC48 AAA family ATP 92.7 0.97 2.1E-05 46.7 10.6 54 44-100 448-504 (733)
441 PRK04328 hypothetical protein; 92.7 0.19 4.1E-06 44.2 4.8 52 82-137 22-73 (249)
442 KOG0331 ATP-dependent RNA heli 92.5 0.64 1.4E-05 44.7 8.2 71 115-196 342-415 (519)
443 COG1219 ClpX ATP-dependent pro 92.4 0.088 1.9E-06 46.6 2.2 18 83-100 97-114 (408)
444 PF06733 DEAD_2: DEAD_2; Inte 92.4 0.068 1.5E-06 44.1 1.5 38 167-204 120-159 (174)
445 KOG1132 Helicase of the DEAD s 92.4 1.5 3.3E-05 44.4 10.9 70 68-137 21-133 (945)
446 TIGR01420 pilT_fam pilus retra 92.2 0.2 4.3E-06 46.4 4.5 42 83-126 122-163 (343)
447 PRK11823 DNA repair protein Ra 92.1 0.71 1.5E-05 44.4 8.2 51 83-137 80-130 (446)
448 KOG0333 U5 snRNP-like RNA heli 92.1 0.49 1.1E-05 44.9 6.7 71 114-195 517-590 (673)
449 PF12846 AAA_10: AAA-like doma 92.1 0.13 2.8E-06 46.6 3.2 41 83-126 1-41 (304)
450 KOG0741 AAA+-type ATPase [Post 92.0 0.69 1.5E-05 44.2 7.7 69 50-123 493-573 (744)
451 TIGR02788 VirB11 P-type DNA tr 92.0 0.28 6E-06 44.7 5.2 40 82-125 143-182 (308)
452 PRK08760 replicative DNA helic 92.0 0.95 2.1E-05 43.9 9.0 112 83-203 229-352 (476)
453 COG0630 VirB11 Type IV secreto 92.0 0.2 4.4E-06 45.5 4.2 54 69-126 128-182 (312)
454 COG4185 Uncharacterized protei 91.9 0.086 1.9E-06 41.7 1.4 38 86-130 5-42 (187)
455 COG0467 RAD55 RecA-superfamily 91.8 0.28 6E-06 43.5 4.9 52 82-137 22-73 (260)
456 COG0210 UvrD Superfamily I DNA 91.8 0.37 8E-06 49.1 6.4 70 68-139 2-72 (655)
457 cd01128 rho_factor Transcripti 91.8 0.5 1.1E-05 41.3 6.3 28 81-109 14-41 (249)
458 PRK13822 conjugal transfer cou 91.7 0.36 7.9E-06 48.4 6.0 48 84-136 225-272 (641)
459 TIGR01243 CDC48 AAA family ATP 91.7 1.5 3.1E-05 45.4 10.5 52 45-99 174-228 (733)
460 PRK13764 ATPase; Provisional 91.6 0.26 5.7E-06 48.7 4.7 26 83-109 257-282 (602)
461 KOG0058 Peptide exporter, ABC 91.6 0.86 1.9E-05 45.3 8.1 39 188-228 620-658 (716)
462 PRK09165 replicative DNA helic 91.6 2.2 4.9E-05 41.6 11.1 115 83-204 217-355 (497)
463 PRK05636 replicative DNA helic 91.5 0.58 1.3E-05 45.6 6.9 20 83-102 265-284 (505)
464 PRK14701 reverse gyrase; Provi 91.5 0.86 1.9E-05 50.8 8.9 61 287-347 121-187 (1638)
465 cd01393 recA_like RecA is a b 91.5 0.71 1.5E-05 39.9 7.0 42 83-124 19-63 (226)
466 PF13555 AAA_29: P-loop contai 91.5 0.14 3.1E-06 33.6 1.9 17 83-99 23-39 (62)
467 COG1485 Predicted ATPase [Gene 91.4 1.4 3E-05 40.0 8.6 109 84-236 66-175 (367)
468 COG1618 Predicted nucleotide k 91.4 0.38 8.2E-06 38.3 4.5 37 84-122 6-42 (179)
469 PF04665 Pox_A32: Poxvirus A32 91.4 0.26 5.7E-06 42.6 4.0 36 85-123 15-50 (241)
470 KOG2036 Predicted P-loop ATPas 91.3 6.2 0.00013 39.2 13.2 62 70-133 255-323 (1011)
471 TIGR02640 gas_vesic_GvpN gas v 91.2 0.18 3.8E-06 44.8 2.9 28 74-101 12-39 (262)
472 TIGR00708 cobA cob(I)alamin ad 91.2 1.3 2.9E-05 36.1 7.6 51 189-240 96-148 (173)
473 PRK13880 conjugal transfer cou 91.2 0.34 7.4E-06 48.7 5.1 45 84-133 176-220 (636)
474 TIGR02639 ClpA ATP-dependent C 91.1 1.9 4.2E-05 44.5 10.7 18 83-100 203-220 (731)
475 TIGR02524 dot_icm_DotB Dot/Icm 91.1 0.23 4.9E-06 46.1 3.6 27 82-109 133-159 (358)
476 PRK09376 rho transcription ter 91.1 0.55 1.2E-05 43.6 6.0 28 72-99 155-185 (416)
477 COG1200 RecG RecG-like helicas 91.0 1.5 3.2E-05 43.4 9.0 76 287-362 310-390 (677)
478 COG1074 RecB ATP-dependent exo 91.0 0.32 7E-06 52.5 5.1 57 82-138 15-73 (1139)
479 PRK11034 clpA ATP-dependent Cl 90.9 1 2.2E-05 46.3 8.2 19 83-101 207-225 (758)
480 TIGR02784 addA_alphas double-s 90.9 0.46 1E-05 51.6 6.2 57 83-139 10-66 (1141)
481 PHA02114 hypothetical protein 90.9 1.2 2.7E-05 31.6 6.2 91 88-203 4-94 (127)
482 cd01121 Sms Sms (bacterial rad 90.9 1.3 2.9E-05 41.3 8.4 51 83-137 82-132 (372)
483 PRK04537 ATP-dependent RNA hel 90.8 1.4 3.1E-05 43.9 9.2 74 115-199 258-334 (572)
484 TIGR00602 rad24 checkpoint pro 90.8 2.3 5.1E-05 42.6 10.4 17 84-100 111-127 (637)
485 cd00268 DEADc DEAD-box helicas 90.7 2.2 4.7E-05 36.0 9.1 72 287-362 68-149 (203)
486 KOG0347 RNA helicase [RNA proc 90.6 0.56 1.2E-05 44.8 5.5 69 290-362 265-346 (731)
487 PRK11192 ATP-dependent RNA hel 90.6 1.3 2.8E-05 42.6 8.5 71 115-196 246-319 (434)
488 TIGR03880 KaiC_arch_3 KaiC dom 90.5 0.49 1.1E-05 40.9 5.0 51 83-137 16-66 (224)
489 PRK14970 DNA polymerase III su 90.5 2.2 4.9E-05 39.9 9.8 18 84-101 40-57 (367)
490 COG2255 RuvB Holliday junction 90.5 0.67 1.5E-05 40.7 5.6 17 85-101 54-70 (332)
491 TIGR02238 recomb_DMC1 meiotic 90.5 1 2.3E-05 40.9 7.2 53 84-136 97-153 (313)
492 COG1126 GlnQ ABC-type polar am 90.4 0.38 8.3E-06 40.4 3.9 30 82-113 27-56 (240)
493 PF13481 AAA_25: AAA domain; P 90.4 0.67 1.4E-05 38.8 5.7 64 75-139 23-94 (193)
494 KOG2228 Origin recognition com 90.4 8.1 0.00018 35.1 12.2 16 83-98 49-64 (408)
495 PRK13700 conjugal transfer pro 90.4 0.26 5.6E-06 49.3 3.4 71 55-128 157-227 (732)
496 PRK10865 protein disaggregatio 90.4 0.84 1.8E-05 47.8 7.3 19 83-101 199-217 (857)
497 PHA00350 putative assembly pro 90.4 2 4.4E-05 40.2 9.0 25 86-110 4-29 (399)
498 PRK05595 replicative DNA helic 90.4 0.61 1.3E-05 44.9 5.9 51 83-136 201-251 (444)
499 PRK09435 membrane ATPase/prote 90.4 6.2 0.00013 36.2 12.0 14 86-99 59-72 (332)
500 KOG1807 Helicases [Replication 90.3 0.44 9.5E-06 47.3 4.8 68 67-134 377-447 (1025)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-72 Score=482.72 Aligned_cols=366 Identities=36% Similarity=0.625 Sum_probs=346.1
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
...+|.++++.+++++++...|+..|+++|+++||.++.|++++..|.||||||.+|++|+++.+...+..+.++|++||
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPt 138 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPT 138 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCc
Confidence 34579999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh-cCCCCCCCccEEEEcCCccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKM 202 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~-~~~~~~~~~~~iVvDEah~~ 202 (427)
|+||.|+.++++.+.... |+++.++.||.+...+...+.+. |+|+|+||++|.+++. ...+.+..++++|+||||++
T Consensus 139 RELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kk-PhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 139 RELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKK-PHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred HHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcC-CCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 999999999999998876 99999999999988888777776 7999999999999888 67888999999999999999
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHH
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (427)
++ .+|...+..|++.++..+|++++|||++..+..+....+.+|..+.+.... .....+.++|..++...|...+..+
T Consensus 217 Ld-~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 217 LD-MDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hh-hhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHH
Confidence 99 899999999999999999999999999999999999999999888776654 4567788999999999999999999
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
++...+..+||||++...+..++-.|+..|+.+..+||.|++..|...++.|++|..+|||||++++||+|+|.+++||+
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhcccccc
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 414 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (427)
||.|.+..+|+||+||++|.|+.|.++.+++. .|.+.+..++..++.++..
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPE 425 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999986 8999999999999888865
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-70 Score=500.85 Aligned_cols=373 Identities=33% Similarity=0.578 Sum_probs=344.4
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC------CCCCeEEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVTAL 118 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~l 118 (427)
...|..+++++.+..+++..||..|+|+|.+.||.++.|+|++..+.||||||++|++|++.++.+ .++.|.+|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 347999999999999999999999999999999999999999999999999999999999998765 44567999
Q ss_pred EEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcC
Q 014314 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 198 (427)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDE 198 (427)
|++|||+||.|+.+++..+.... .++..+++||.....+...+.++ .+|+|+||+++..+++....+++++.++|+||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999886 68899999999999999999998 69999999999999999999999999999999
Q ss_pred CcccccCCCcHHHHHHHHHhC-CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCC-ccccccceEEEEEEechhhHH
Q 014314 199 CDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYIKLSELEKN 276 (427)
Q Consensus 199 ah~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 276 (427)
||+|++ .+|.+.+.+|+..+ +...|++++|||+|.+++.++..++.++..+.+... .......+.+....+....|.
T Consensus 248 ADrMld-mGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~ 326 (519)
T KOG0331|consen 248 ADRMLD-MGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKL 326 (519)
T ss_pred HHhhhc-cccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHH
Confidence 999998 89999999999999 555689999999999999999999999999888755 445556677777778888888
Q ss_pred HHHHHHHHhc---CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCC
Q 014314 277 RKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (427)
Q Consensus 277 ~~l~~~l~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 353 (427)
..+..+|... .++|+||||++++.|+.++..|+..++++..+||+.++.+|..+++.|++|+..|||||++++||||
T Consensus 327 ~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 327 RKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 8888888876 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCC
Q 014314 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 354 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
+|++++||+||+|.++++|+||+||+||.|+.|.+++|+. ..+......+.+.++...+.+|.++..
T Consensus 407 i~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft-~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 407 VPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFT-SDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred CccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEe-HHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 9999999999999999999999999999999999999997 578888888999888888888876543
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-66 Score=493.95 Aligned_cols=366 Identities=40% Similarity=0.666 Sum_probs=339.4
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC--CCCCeEEEEEeCc
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHT 123 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~lil~P~ 123 (427)
..|.++++++.+++++.++||..|+|+|.++||.++.|+|+++.++||||||++|++|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 56999999999999999999999999999999999999999999999999999999999999763 3222229999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
|+||.|+++.+..+....+++++..++||.+...+...+..+ ++|+|+||+++++++....+.+..++++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhh
Confidence 999999999999998876578899999999999999888886 7999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcc-ccccceEEEEEEechhh-HHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELE-KNRKLND 281 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~ 281 (427)
+ .+|...+..+...++...|++++|||+|..+..+...++.+|..+.+..... .....+.+.++.+.... |...+..
T Consensus 188 d-~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 188 D-MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred c-CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 9 7999999999999999999999999999999999999999998887773332 35677888888888765 9999999
Q ss_pred HHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE
Q 014314 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (427)
Q Consensus 282 ~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi 361 (427)
++......++||||+++..++.++..|...|+++..+||++++.+|.+.++.|++|+.+|||||++++||||+|++++||
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccc
Q 014314 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 413 (427)
Q Consensus 362 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (427)
+||.|.+.+.|+||+||+||+|+.|.++.|+.+..+...++.+++.+...++
T Consensus 347 nyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 347 NYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999975689999999999876644
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-65 Score=422.13 Aligned_cols=371 Identities=38% Similarity=0.650 Sum_probs=347.5
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
....|+++++..++++.+...||+.|+.+|+.|++.++.|++++.++..|+|||.+|.+.+++.+.-..+..+++|++||
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPT 104 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPT 104 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecCh
Confidence 35679999999999999999999999999999999999999999999999999999999999988877776799999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
|+|+.|+.+.+..+.... ++.+-...||.+..++.+.+.-| .+++.+||++++.++++..+..+.++++|+||||.++
T Consensus 105 RELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G-~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 105 RELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYG-QHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred HHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhccc-ceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence 999999999999998887 88999999999998888888866 5999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh-hHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDL 282 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 282 (427)
+ .+|..++..+++.+++..|++++|||+|.++......++.+|..+.+..... +...+.++++....+ +|...+.++
T Consensus 183 ~-kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewKfdtLcdL 260 (400)
T KOG0328|consen 183 N-KGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWKFDTLCDL 260 (400)
T ss_pred H-hhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhhHhHHHHH
Confidence 8 6999999999999999999999999999999999999999999998876654 556677778776554 599999999
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
...+.-.+.+|||+++..++++.+.+++.++.+...||+|++++|..+++.|+.|+.+||++|++-++|+|+|.+.+||+
T Consensus 261 Yd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN 340 (400)
T KOG0328|consen 261 YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN 340 (400)
T ss_pred hhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCccc
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
||.|.+.+.|+||+||.||.|++|.++.|+. .++...++.+++.+...+.++|-.+
T Consensus 341 YDLP~nre~YIHRIGRSGRFGRkGvainFVk-~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 341 YDLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred cCCCccHHHHhhhhccccccCCcceEEEEec-HHHHHHHHHHHHHHhhhcccccchh
Confidence 9999999999999999999999999999997 6888999999999999999998654
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.5e-64 Score=484.22 Aligned_cols=377 Identities=30% Similarity=0.519 Sum_probs=333.4
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-----CCCC
Q 014314 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQ 114 (427)
Q Consensus 40 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-----~~~~ 114 (427)
..+.+...|.++++++.++++|.++||..|+++|.++||.++.|+|+++++|||||||++|++|++..+.. ...+
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~g 203 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDG 203 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCC
Confidence 34455678999999999999999999999999999999999999999999999999999999999876532 2234
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEE
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHF 194 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~i 194 (427)
+.+|||+||++||.|+.++++.+.... ++++.+++|+.....+...+.++ ++|+|+||++|..++......+.++++|
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 689999999999999999999998765 78899999998887777777776 6999999999999999888889999999
Q ss_pred EEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcC-CCeEEEEcCCccccccceEEEEEEechh
Q 014314 195 ILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSEL 273 (427)
Q Consensus 195 VvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (427)
|+||||++++ .+|...+..++..+++..|++++|||+|..+..++..++. .+..+.+..........+.+.+..+...
T Consensus 282 ViDEAd~mld-~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 282 VLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH 360 (545)
T ss_pred EeehHHhhhh-cchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech
Confidence 9999999998 7899999999999999999999999999999888888775 5666666544433344555666666677
Q ss_pred hHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcccc
Q 014314 274 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351 (427)
Q Consensus 274 ~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 351 (427)
.|...+..++... ...++||||++++.|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcC
Confidence 7778888888765 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 352 ld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
||+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++ ++....+.+.+.+....+++|+.+.
T Consensus 441 IDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~-~~~~~~~~l~~~l~~~~q~vp~~l~ 508 (545)
T PTZ00110 441 LDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQPVPPELE 508 (545)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECc-chHHHHHHHHHHHHHccCCCCHHHH
Confidence 9999999999999999999999999999999999999999985 6778888999988888888887654
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1e-63 Score=478.42 Aligned_cols=364 Identities=33% Similarity=0.579 Sum_probs=333.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+|.++++++.+.++|.++||..|+|+|+++++.++.|+|++++||||||||++|++|+++.+......+++||++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999999876655668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+.+.++.+....+++++..++|+.+...+...+..+ ++|+|+||+++..++.+....+.++++||+||||.+++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~-~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~- 161 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD- 161 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCC-CCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhC-
Confidence 9999999999988776688999999999988887777765 69999999999999998888899999999999999998
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 285 (427)
.+|...+..++..++...|++++|||+++.+..+...++.++..+.+..... ...+.+.++......+...+..++..
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k~~~l~~ll~~ 239 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD--LPAIEQRFYEVSPDERLPALQRLLLH 239 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC--CCCeeEEEEEeCcHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999998887765442 34466777777877889999999988
Q ss_pred cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC
Q 014314 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 365 (427)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~ 365 (427)
..+.++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhcccccc
Q 014314 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 414 (427)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (427)
|.+..+|+||+||+||.|+.|.+++|+.+ .+...++.+++.++.++..
T Consensus 320 p~~~~~yiqR~GRtGR~g~~G~ai~l~~~-~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 320 ARDPEVHVHRIGRTGRAGSKGLALSLVAP-EEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CCCHhHhhhhcccccCCCCcceEEEEEch-hHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999975 5677788888888776653
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-64 Score=447.81 Aligned_cols=358 Identities=30% Similarity=0.517 Sum_probs=325.4
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC----CCCeEEEEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVL 120 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil 120 (427)
...|++..|++...+++..+||..+|++|+..++.++.|+|+++.|.||+|||++|++|+++.+.+. .++..++||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 4468899999999999999999999999999999999999999999999999999999999876432 345689999
Q ss_pred eCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC-CCCCCccEEEEcCC
Q 014314 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILDEC 199 (427)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~-~~~~~~~~iVvDEa 199 (427)
||||+||.|++.+++.+....+++.+.++.||.+.....+.+.++ ++|+|+||++|+.++++.. +.+.+.+++|+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 999999999999999999988889999999999999999999986 6999999999999888654 45677789999999
Q ss_pred cccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCC-CeEEEEcCCcc-ccccceEEEEEEechhhHHH
Q 014314 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDEAK-LTLHGLVQHYIKLSELEKNR 277 (427)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 277 (427)
|++++ .+|...+..|...++..+|.+++|||.+..+++++...+.. +..+.+..... .....+.+.|+..+...+..
T Consensus 240 DrlLd-~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 240 DRLLD-IGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred hhhhh-cccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999 89999999999999999999999999999999999887765 77776655444 44556777788888888888
Q ss_pred HHHHHHHhcCC-CeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 278 KLNDLLDALDF-NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 278 ~l~~~l~~~~~-~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
.+..+++.... .++||||+|...+..+++.|+...++|..+||++++..|..+...|++.+..|||||++++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88888887766 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHH
Q 014314 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405 (427)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 405 (427)
+++||+||+|.++.+|+||+||+||.|+.|.+++++.+ .+..+++.++
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p-~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP-WELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh-hHHHHHHHHh
Confidence 99999999999999999999999999999999999985 5667778877
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-63 Score=471.40 Aligned_cols=366 Identities=31% Similarity=0.498 Sum_probs=323.4
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-------CCCeEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTA 117 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~ 117 (427)
...|+++++++.++++|.+.||..|+++|+++||.++.|+|++++||||||||++|++|+++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4579999999999999999999999999999999999999999999999999999999999866421 234689
Q ss_pred EEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEc
Q 014314 118 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 197 (427)
Q Consensus 118 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvD 197 (427)
||++||++||.|+.+.+..+.... ++++..++|+.+...+...+.++ ++|+|+||+++..++....+.+.+++++|+|
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESG-VDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 999999999999999999998776 89999999998887777777655 6999999999999998888899999999999
Q ss_pred CCcccccCCCcHHHHHHHHHhCCC--CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhH
Q 014314 198 ECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (427)
Q Consensus 198 Eah~~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (427)
|||.+++ .+|...+..++..++. ..+.+++|||++..+..+....+.++..+.+..... ....+.+.+.......|
T Consensus 165 Ead~l~~-~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 165 EADRMFD-LGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEK 242 (423)
T ss_pred cHHHHhh-cccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHH
Confidence 9999988 6899999999888874 467899999999999888888888887776654432 22334445555566678
Q ss_pred HHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCC
Q 014314 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (427)
Q Consensus 276 ~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~ 355 (427)
...+..++......++||||++++.|+.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 88888888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccC
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (427)
++++||+||+|.+...|+||+||+||.|+.|.+++|+.+ .+...+..+++.+..+++..
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~-~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE-EYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCH-HHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999975 56667888888888776543
No 9
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-65 Score=430.18 Aligned_cols=378 Identities=39% Similarity=0.656 Sum_probs=355.4
Q ss_pred cccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe
Q 014314 42 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (427)
Q Consensus 42 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (427)
..+...|+++.|..+++..+.++||+.|+|+|+++||.++.|+|++..|..|+|||-+|.+|+++.+.......+++|++
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilV 160 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILV 160 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc
Q 014314 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201 (427)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~ 201 (427)
|+|+||.|+.+.++++++.. ++.+.+.+||++...+.-.+... .+++|+||++++++..+.--.++...++|+||||.
T Consensus 161 PtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~-VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQT-VHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred ecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCc-eEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 99999999999999999987 89999999999888776666555 69999999999999999888899999999999999
Q ss_pred cccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHH
Q 014314 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (427)
+++ .+|...+..++..+|+.+|++++|||+|-.+..+...++.+|+.+..-.+ ..+..+.++|-.+.+..|...+..
T Consensus 239 lLs-~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLS-VDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhc-hhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHH
Confidence 998 89999999999999999999999999999999999999999998876544 456777888888999999999999
Q ss_pred HHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE
Q 014314 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (427)
Q Consensus 282 ~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi 361 (427)
+..++.-.+.||||++.+.++.+++...+.|+.+..+|+.|-++.|.+++..|++|..+.||||+.+.||+|++.+++||
T Consensus 316 LfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 316 LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCCCCCC
Q 014314 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425 (427)
Q Consensus 362 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 425 (427)
+||+|++.++|+||+||.||.|..|.++.++. .++...+..+++.++.+++++|.-|+.+-|-
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLit-yedrf~L~~IE~eLGtEI~pip~~iDk~lyv 458 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLIT-YEDRFNLYRIEQELGTEIKPIPSNIDKSLYV 458 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEe-hhhhhhHHHHHHHhccccccCCCcCCccccc
Confidence 99999999999999999999999999999997 5788889999999999999999999988773
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-65 Score=451.27 Aligned_cols=357 Identities=34% Similarity=0.603 Sum_probs=327.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCC---CeEEEEEeC
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCH 122 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P 122 (427)
.+|.+++|+-.+++++..+||..|+|+|...||..+.|+|++.||.||||||.+|++|+++.+.-.+. ..++||++|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 37999999999999999999999999999999999999999999999999999999999998765443 348999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCCcc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDK 201 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvDEah~ 201 (427)
||+|+.|++...++++.+. ++.++...||.+...+...++.. |||+|+||++|..++++. .+++.++.++|+||||+
T Consensus 261 TRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred cHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 9999999999999999887 79999999999999999999988 799999999999988754 68899999999999999
Q ss_pred cccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec---hhhHHHH
Q 014314 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS---ELEKNRK 278 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 278 (427)
|++ .+|...+.+|++.+++++|+++||||+...+..++...+..|+.+.+++..... ..+.+.|+.+. +..+...
T Consensus 339 MLe-egFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a-~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLE-EGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTA-PKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHH-HHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccc-hhhhHHHheeccccccccHHH
Confidence 998 799999999999999999999999999999999999999999999998876544 44555555443 4457778
Q ss_pred HHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCC
Q 014314 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358 (427)
Q Consensus 279 l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~ 358 (427)
+..++...-...+|||+.+++.|..+.-.|--.|+++.-+||.+++.+|...++.|++++++|||||+++++|||++++.
T Consensus 417 l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 417 LASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 88888888789999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHH
Q 014314 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 359 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 407 (427)
+||+|.+|.+...|+||+||++|+|+.|.++.|+. .++..+++.+.+.
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvg-E~dRkllK~iik~ 544 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVG-ESDRKLLKEIIKS 544 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcccCcceEEEec-cccHHHHHHHHhh
Confidence 99999999999999999999999999999999998 4588888877665
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-64 Score=439.12 Aligned_cols=373 Identities=29% Similarity=0.526 Sum_probs=335.9
Q ss_pred CCCCC--CCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-----CCCCeEEEE
Q 014314 47 GFRDF--LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQVTALV 119 (427)
Q Consensus 47 ~~~~~--~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-----~~~~~~~li 119 (427)
.|+++ +|++++++++..+||..+||+|..+||.++.++|+++.++||||||++|++|++..+.. .+....+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 45554 46799999999999999999999999999999999999999999999999999997722 223357899
Q ss_pred EeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCCCCccEEEEc
Q 014314 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILD 197 (427)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~--~~~~~~~~iVvD 197 (427)
|+|||+|+.|+.+.+..|...++++++.++.||.+...+...+....++|+|+||++|..++++.. +++.++.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999999888889999999999999999999998888999999999999998754 445599999999
Q ss_pred CCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcc-ccccceEEEEEEechhhHH
Q 014314 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELEKN 276 (427)
Q Consensus 198 Eah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 276 (427)
|||++++ .+|...+..|+..+|+++++=++|||....+.++....+.+|..+.+..... ..+..+...|..+....|.
T Consensus 165 EADrLld-mgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 165 EADRLLD-MGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred chHhHhc-ccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 9999998 8999999999999999999999999999999999999999999988876554 3455677888899999999
Q ss_pred HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCC
Q 014314 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (427)
Q Consensus 277 ~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~ 354 (427)
..+.+++.+...+++|||++|...++++...|... +..++.+||.|.+..|..++..|.+....+|+||++++||||+
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 99999999988899999999999999999999875 6788999999999999999999999888899999999999999
Q ss_pred CCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCC
Q 014314 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
|++++||+||+|.++..|+||+||++|.|+.|.+++|+.+ .+..|+..+.-.-.+.+.++.....+
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p-~E~aYveFl~i~~~v~le~~~~e~~~ 389 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP-REEAYVEFLRIKGKVELERIDTEKAS 389 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc-cHHHHHHHHHhcCccchhhhcccccc
Confidence 9999999999999999999999999999999999999986 78888888777655666665544443
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.4e-63 Score=481.59 Aligned_cols=367 Identities=35% Similarity=0.640 Sum_probs=334.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+|.+++|++.++++|.++||..|+|+|.++|+.++.++++++.||||||||++|.+|++..+......+++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 35999999999999999999999999999999999999999999999999999999999988766555669999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+++.+..+....+++.+..++|+.+...+...+..+ ++|+|+||++++.++.+..+.++++++||+||||.+++
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~- 163 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR- 163 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh-
Confidence 9999999999998877789999999999888877777665 69999999999999998888899999999999999988
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 285 (427)
.+|...+..++..++...|++++|||+|..+..+...++.++..+.+..... ....+.+.+.......|...+..++..
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~-~~~~i~q~~~~v~~~~k~~~L~~~L~~ 242 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEA 242 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc-cCCceEEEEEEechhhHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999888776654432 334556667777777888889999988
Q ss_pred cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC
Q 014314 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 365 (427)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~ 365 (427)
....++||||+++..+..+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+|++
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCC
Q 014314 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 416 (427)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (427)
|.+..+|+||+||+||.|+.|.+++|+.+ .+...++.+++.+...++.++
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ai~~v~~-~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CCCHHHHHHHhccccCCCCcceEEEEech-HHHHHHHHHHHHhCCCcceec
Confidence 99999999999999999999999999974 567788899988888876653
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.7e-62 Score=467.58 Aligned_cols=363 Identities=33% Similarity=0.600 Sum_probs=324.1
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC------CCeEEEEE
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP------GQVTALVL 120 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil 120 (427)
+|++++|++.+.++|.++||..|+++|.++++.++.++|+++++|||||||++|++|+++.+.... ..+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999998864321 23579999
Q ss_pred eCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCc
Q 014314 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (427)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah 200 (427)
+||++||.|+.+.++.+.... ++++..++|+.+...+...+..+ ++|+|+||++|+.++......++++++||+||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGG-VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCC-CcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 999999999999999998775 78899999999888777666655 6999999999999988888889999999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHH
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (427)
.+++ .+|...+..++..++...|++++|||++..+..+...++.++..+.+..... ....+.+.+.......+...+.
T Consensus 160 ~ll~-~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 160 RMLD-MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNT-ASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHhc-cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccc-cccceeEEEEEcCHHHHHHHHH
Confidence 9998 6888899999999999999999999999999999989988887776544322 2234555566666667777888
Q ss_pred HHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEE
Q 014314 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (427)
Q Consensus 281 ~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~v 360 (427)
.++......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 88877777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhcccccc
Q 014314 361 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 414 (427)
Q Consensus 361 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (427)
|+|++|.+..+|+||+||+||.|..|.+++|+.. ++...++.+++.+..++..
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~-~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCV-DEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecH-HHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999984 6778899999998887743
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.8e-62 Score=472.69 Aligned_cols=380 Identities=31% Similarity=0.500 Sum_probs=331.3
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-------CC
Q 014314 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NP 112 (427)
Q Consensus 40 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~ 112 (427)
..+.+...|.++++++.+++.|.+.||..|+|+|.++|+.++.|+++++++|||||||++|++|++..+.. ..
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 34455667999999999999999999999999999999999999999999999999999999999976431 22
Q ss_pred CCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 113 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 113 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
.++++||++||++||.|+.+.++.+.... ++++..+.||.....+...+..+ ++|+|+||++|..++.+....+.+++
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCC-CCEEEECHHHHHHHHHcCCccchhee
Confidence 45689999999999999999999887765 67888889988877777677666 69999999999999988888899999
Q ss_pred EEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEech
Q 014314 193 HFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 272 (427)
Q Consensus 193 ~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (427)
+||+||||.+++ .+|...+..++..++ ..|++++|||++..+..++..++.++..+....... ......+.......
T Consensus 273 ~lViDEad~ml~-~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~ 349 (518)
T PLN00206 273 VLVLDEVDCMLE-RGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVET 349 (518)
T ss_pred EEEeecHHHHhh-cchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccc
Confidence 999999999998 689999988888875 579999999999999999998888888777654432 22334444555555
Q ss_pred hhHHHHHHHHHHhcC--CCeEEEEECCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc
Q 014314 273 LEKNRKLNDLLDALD--FNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (427)
Q Consensus 273 ~~~~~~l~~~l~~~~--~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 349 (427)
..+...+..++.... ..++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~ 429 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG 429 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh
Confidence 666677777776543 36899999999999999999975 589999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCCCCCC
Q 014314 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425 (427)
Q Consensus 350 ~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 425 (427)
+|+|+|++++||+|++|.+..+|+||+||+||.|..|.+++|+.. ++...+..+.+.+...-+.+|+.+.+++|+
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~-~~~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 504 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE-EDRNLFPELVALLKSSGAAIPRELANSRYL 504 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch-hHHHHHHHHHHHHHHcCCCCCHHHHhChhh
Confidence 999999999999999999999999999999999999999999974 567788899999998899999999998876
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.6e-62 Score=470.69 Aligned_cols=365 Identities=30% Similarity=0.520 Sum_probs=322.6
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-------CCCeEEE
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTAL 118 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~l 118 (427)
.+|.++++++.++++|.+.||..|+|+|.++||.++.|+|+++++|||||||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 469999999999999999999999999999999999999999999999999999999999876421 1236899
Q ss_pred EEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEc
Q 014314 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILD 197 (427)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvD 197 (427)
||+||++|+.|+++.++.+.... ++++..++|+.....+...+..+ ++|+|+||++|++++... .+.+..+++||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~-~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQG-VDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCC-CCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 99999999999999999998775 78999999999888777767655 699999999999988765 4678899999999
Q ss_pred CCcccccCCCcHHHHHHHHHhCCC--CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhH
Q 014314 198 ECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (427)
Q Consensus 198 Eah~~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (427)
|||.+++ .+|...+..++..++. ..|++++|||++..+..+...++..+..+...... .....+.+.+.......+
T Consensus 167 EAh~lld-~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 167 EADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEK 244 (572)
T ss_pred CHHHHhh-cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHH
Confidence 9999987 6899999999888876 68999999999999888888888887766554433 233445566666667778
Q ss_pred HHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCC
Q 014314 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (427)
Q Consensus 276 ~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~ 355 (427)
...+..++......++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 88888888877788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccC
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (427)
++++||+|+.|.+..+|+||+||+||.|+.|.+++|+.. .+...+..+++.++.++...
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~-~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE-RYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecH-HHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999999999999999985 55667888988888777544
No 16
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-62 Score=437.06 Aligned_cols=366 Identities=33% Similarity=0.536 Sum_probs=331.7
Q ss_pred cCCcccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccC-------
Q 014314 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE------- 109 (427)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~------- 109 (427)
+++..+.+..+|++.+++.++++.+...||..|+|+|+.++|..++.+|++..+.||||||++|++|++..+.
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~ 315 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR 315 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch
Confidence 3444555667899999999999999999999999999999999999999999999999999999999987543
Q ss_pred --CCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC
Q 014314 110 --PNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS 187 (427)
Q Consensus 110 --~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~ 187 (427)
+...++.++|++|||+|+.|+.++-.+|.+.. +++++.+.||.+..++--.+..+ +.|+|+||++|...+.+..+-
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~g-ceiviatPgrLid~Lenr~lv 393 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMG-CEIVIATPGRLIDSLENRYLV 393 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhcc-ceeeecCchHHHHHHHHHHHH
Confidence 22345689999999999999999999999887 79999999999999887788888 499999999999999999999
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC-------------------------ceEEEEEccCCccHHHHHHH
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-------------------------KQVMMFSATLSKEIRPVCKK 242 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~v~~SAT~~~~~~~~~~~ 242 (427)
++.+.++|+|||++|.+ .+|.+.+..++..++.. +|+++||||+|+.+..+++.
T Consensus 394 l~qctyvvldeadrmiD-mgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 394 LNQCTYVVLDEADRMID-MGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred hccCceEeccchhhhhc-ccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 99999999999999998 89999999998876631 48999999999999999999
Q ss_pred hcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCC
Q 014314 243 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (427)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~ 322 (427)
++.+|..+++...+... ..+.+........++...|..++++....++|||+|+++.|+.+++.|.+.|+.+..|||+-
T Consensus 473 ylr~pv~vtig~~gk~~-~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 473 YLRRPVVVTIGSAGKPT-PRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred HhhCCeEEEeccCCCCc-cchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 99999999988877644 56677778888888999999999998889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHH
Q 014314 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402 (427)
Q Consensus 323 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 402 (427)
++++|..++..|++|..+|||||+++++|+|+|+|.+||+||+++|..+|.||+||+||+|+.|.++.|++..+.. ++.
T Consensus 552 ~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~-v~y 630 (673)
T KOG0333|consen 552 SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA-VFY 630 (673)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865544 444
Q ss_pred HHHHH
Q 014314 403 QVQAR 407 (427)
Q Consensus 403 ~~~~~ 407 (427)
.|...
T Consensus 631 dLkq~ 635 (673)
T KOG0333|consen 631 DLKQA 635 (673)
T ss_pred HHHHH
Confidence 44443
No 17
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-64 Score=409.34 Aligned_cols=382 Identities=76% Similarity=1.196 Sum_probs=355.7
Q ss_pred hhhhccccchhcccC-CCcchhccccccccCCcccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEE
Q 014314 9 YEDELLDYEEEDAQA-PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVI 87 (427)
Q Consensus 9 ~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~l 87 (427)
.|+++.|+++++... +..++..+..+..++.++++++++|++|.|.|++++++..+||++|+.+|.++||....|.+++
T Consensus 4 ~e~dlldyeeeee~~~~~~~~~~~~~~d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvl 83 (387)
T KOG0329|consen 4 VEEDLLDYEEEEEEQADQESAPAGPKKDKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 83 (387)
T ss_pred hhhhhhcccccccccCCccCCCCCccccccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhh
Confidence 466777776665544 3334444555567788999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCC
Q 014314 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167 (427)
Q Consensus 88 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (427)
++|..|.|||.+|+++.++++..-.+...++++|.||+||-|+..+..+|+++.|+.++.+++||.+++...+.+.+ +|
T Consensus 84 cqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~P 162 (387)
T KOG0329|consen 84 CQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CP 162 (387)
T ss_pred eecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888 78
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCC
Q 014314 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP 247 (427)
Q Consensus 168 ~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~ 247 (427)
+|+|+||++++.+.+...+++++++..|+||++.++++.+.++.++++++..|..+|++++|||++++++..++.++.+|
T Consensus 163 hivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdP 242 (387)
T KOG0329|consen 163 HIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDP 242 (387)
T ss_pred eEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCc
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHH
Q 014314 248 MEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 327 (427)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r 327 (427)
..++++.+.+..++.+.++|+...+.+|...+.++++.+.-.+++||+.+.... +
T Consensus 243 mEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl---------------------~---- 297 (387)
T KOG0329|consen 243 MEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRL---------------------S---- 297 (387)
T ss_pred hhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhh---------------------h----
Confidence 999999999999999999999999999999999999999999999999886650 0
Q ss_pred HHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHH
Q 014314 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 328 ~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 407 (427)
|. .+ +|+|+..++|+|+..++.|++||.|.+..+|+||.|||||.|..|.++.|++..++..+++.+..+
T Consensus 298 ------f~---kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 298 ------FQ---KR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred ------hh---hh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 31 22 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCcccCCCCCCC
Q 014314 408 FEVDIKELPEQIDTSTYMP 426 (427)
Q Consensus 408 ~~~~~~~l~~~~~~~~~~~ 426 (427)
++..+.+||+.++.+.|+.
T Consensus 368 f~v~i~eLpdeid~s~y~~ 386 (387)
T KOG0329|consen 368 FEVNIKELPDEIDFSTYEK 386 (387)
T ss_pred hhccHhhcCcccchhhhhc
Confidence 9999999999999999874
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-62 Score=416.60 Aligned_cols=370 Identities=32% Similarity=0.532 Sum_probs=334.2
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
...|..+++++|+.+.|+.+|+..|+|+|..+||.++.|+|++-+|.||||||.+|.+|+++.+.+.+.+.-++|++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC----CCCCCCccEEEEcCCc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK----DLSLKNVRHFILDECD 200 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~----~~~~~~~~~iVvDEah 200 (427)
+|+.|+.++|..+.+.. ++++.+++||...-.+...+... ++++|+||+++..++..+ .+.+.+++++|+|||+
T Consensus 86 ELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~r-PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDR-PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccC-CCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 99999999999988776 89999999999877776666666 699999999999988766 2447889999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcC-CccccccceEEEEEEechhhHHHHH
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD-EAKLTLHGLVQHYIKLSELEKNRKL 279 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 279 (427)
.+++ ..|...+..+...+|..+|.+++|||+.+.+......-...+..+..+. ........+.+.|+.++...+...+
T Consensus 164 rvL~-~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 164 RVLA-GCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYL 242 (442)
T ss_pred hhhc-cchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHH
Confidence 9998 6999999999999999999999999999887766554444432222222 4445667788899999999999888
Q ss_pred HHHHHhcC---CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 280 NDLLDALD---FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 280 ~~~l~~~~---~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
..++.... .+.++||+++..+|+.++..|+..++++..+|+.|++.+|...+..|+.+..++||||+++++|+|+|.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 88887653 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
++.||+++.|.++.+|+||+||++|+|+.|.++.|+. ..|.+.+..+++..+.++.+.+..
T Consensus 323 V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt-~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 323 VELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT-QRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred eeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec-hhhHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999998 789999999999999999887654
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.2e-61 Score=455.72 Aligned_cols=362 Identities=35% Similarity=0.581 Sum_probs=319.7
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC----CCCCeEEEEEeC
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVLCH 122 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~----~~~~~~~lil~P 122 (427)
.|+++++++.+++.|.++||..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.. ..+.+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 5899999999999999999999999999999999999999999999999999999999987642 223458999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~ 202 (427)
|++|+.|+.+.+..+.... ++++..++|+.....+...+..+ ++|+|+||++|+.++....+.+.++++||+||||++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSEN-QDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCC-CCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999998776 78999999999888777766655 699999999999999988888999999999999999
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCc-cHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhhHHHHHH
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLN 280 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 280 (427)
++ .+|...+..+....+...|++++|||++. .+..+...++.++..+........ ...+.+.+.... ...+...+.
T Consensus 160 l~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LD-MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE-RKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hC-CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCccc-ccCceEEEEEeCCHHHHHHHHH
Confidence 98 78999999999988888999999999985 477788888888887766554332 233444444443 456778888
Q ss_pred HHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEE
Q 014314 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (427)
Q Consensus 281 ~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~v 360 (427)
.++......++||||++++.++.+++.|+..++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 238 HLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 88887677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccc
Q 014314 361 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 413 (427)
Q Consensus 361 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (427)
|+|++|.+...|+||+||+||.|..|.+++++. ..+...+..+++.+...+.
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~-~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVE-AHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEec-HHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999997 4677788888887766553
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-62 Score=437.88 Aligned_cols=365 Identities=28% Similarity=0.516 Sum_probs=334.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC----CCCCeEEEEEe
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVLC 121 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~----~~~~~~~lil~ 121 (427)
..|.+|+++....+.|+..+|..|+.+|+++||..+.|+|++-+|.||||||++|++|+++.+.. ...+.-+|||+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 36999999999999999999999999999999999999999999999999999999999987542 23456899999
Q ss_pred CchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCc
Q 014314 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECD 200 (427)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah 200 (427)
|||+||.|+++.+.+..+.. ++..+.+.||.........+.. .+|+||||++|+.++.. ..+...++.++|+||||
T Consensus 149 PTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~--mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQ--MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred chHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhc--CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 99999999999999998886 8999999999988777666654 59999999999997765 46778899999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcC-CccccccceEEEEEEechhhHHHHH
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD-EAKLTLHGLVQHYIKLSELEKNRKL 279 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 279 (427)
++++ ++|...+..|+..+|+.+|+++||||....+.++++..+.+|..+.+.. .....+..+.+.|+.+....|...|
T Consensus 226 R~LD-MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 226 RMLD-MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHH-HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 9999 8999999999999999999999999999999999999999999887763 3356677888999999999999999
Q ss_pred HHHHHhcCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCC
Q 014314 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (427)
Q Consensus 280 ~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~ 357 (427)
..++..+...++|||++|.+++.++++.+.+. |++...+||.|++..|..++..|.....-||+||++++||||+|.+
T Consensus 305 ~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 305 WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 99999999999999999999999999999876 8999999999999999999999998888999999999999999999
Q ss_pred CEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccC
Q 014314 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (427)
++||++|+|.++.+|+||+||++|.+..|.+.+++.+..+..++..|++.. +.++++
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i 441 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEI 441 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhh
Confidence 999999999999999999999999999999999999988888888888874 555543
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.8e-61 Score=458.77 Aligned_cols=369 Identities=31% Similarity=0.590 Sum_probs=326.5
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC-------CCeEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTA 117 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~ 117 (427)
...|.++++++.+.++|.+.||..|+++|.++++.++.|+|+++.+|||||||++|++|++..+.... +.+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34688999999999999999999999999999999999999999999999999999999998865432 24589
Q ss_pred EEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEc
Q 014314 118 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 197 (427)
Q Consensus 118 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvD 197 (427)
|||+||++|+.|+.+.++.+.... ++++..++|+.....+...+....++|+|+||++|+.+...+...++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 999999999999999999998775 7899999999888777777766667999999999999988888889999999999
Q ss_pred CCcccccCCCcHHHHHHHHHhCCC--CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhH
Q 014314 198 ECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (427)
Q Consensus 198 Eah~~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (427)
|+|.+.+ .++...+..++...+. ..|++++|||++.....++..++.++..+.+..... ......+.+.......+
T Consensus 245 Eah~l~~-~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADRMLD-MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHHHHh-cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhH
Confidence 9999987 6888889888888764 579999999999999999999888887766654432 22334455556666777
Q ss_pred HHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCC
Q 014314 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (427)
Q Consensus 276 ~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~ 355 (427)
...+..++......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|++++||||+++++|+|+|
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 88888888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccc-cCCc
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK-ELPE 417 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 417 (427)
++++||++++|.|..+|+||+||+||.|+.|.+++|++. +|..++..+++.++.++. ++|.
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~-~d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGE-DDAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecH-HHHHHHHHHHHHhCCCCcccCCc
Confidence 999999999999999999999999999999999999985 577889999999988873 4443
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-62 Score=420.91 Aligned_cols=375 Identities=31% Similarity=0.522 Sum_probs=345.6
Q ss_pred ccccCCCCCC-CCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC------CCC
Q 014314 41 VGIHSSGFRD-FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPG 113 (427)
Q Consensus 41 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~ 113 (427)
.+.+...|++ |...+++.+.+.+.||..|+|+|.+|||.+++|+|++..+.||+|||++|++|.+-.+.. ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 3445566755 677899999999999999999999999999999999999999999999999998876542 234
Q ss_pred CeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccE
Q 014314 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 193 (427)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 193 (427)
.+.+|+++||++|+.|+.-++.++.- .+.+..+++|+.+...+.+.+..+ .+|+++||++|..+.-.+-+++.++.+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrg-veiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 56899999999999999998887753 388999999999999999999888 699999999999999999999999999
Q ss_pred EEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh
Q 014314 194 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL 273 (427)
Q Consensus 194 iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (427)
+|+||||.|++ .+|.+.+.+++-...+++|+++.|||.|..++.++..++.+|..+++..........+.+.++...+.
T Consensus 371 lVlDEADrMLD-MgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~ 449 (629)
T KOG0336|consen 371 LVLDEADRMLD-MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDS 449 (629)
T ss_pred EEecchhhhhc-ccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccH
Confidence 99999999999 89999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred hHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccC
Q 014314 274 EKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (427)
Q Consensus 274 ~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 352 (427)
+|...+..+..+. ...++||||..+..|+.+...|.-.|+.+-.+||+-.+.+|+..++.|+.|+++|||+|+.+++||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 9999988888766 557999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 353 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
|+|++.||++||+|.+.+.|+||+||+||+|+.|.++.|+. .+++.....|.+.++..-+++|+++-
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt-~~D~~~a~eLI~ILe~aeQevPdeL~ 596 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLT-RNDWSMAEELIQILERAEQEVPDELV 596 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEe-hhhHHHHHHHHHHHHHhhhhCcHHHH
Confidence 99999999999999999999999999999999999999997 68999999999999999999998763
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.9e-59 Score=442.43 Aligned_cols=371 Identities=37% Similarity=0.661 Sum_probs=324.1
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
..+|+++++++.+.+++.+.||..|+++|.++++.++.++++++++|||||||++|++|+++.+.......++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999876554556899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
+|+.|+.+.+..+.... ++.+....|+.....+...+..+ ++|+|+||+++..++.+....++++++||+||+|.+.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 99999999999887664 67788888888777766666665 59999999999998888878899999999999999987
Q ss_pred CCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEech-hhHHHHHHHHH
Q 014314 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLL 283 (427)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l 283 (427)
.++...+..+++..+...|++++|||+|+....+...++..+..+....... ......+.+..... ..+...+..++
T Consensus 185 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (401)
T PTZ00424 185 -RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCDLY 262 (401)
T ss_pred -cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHHHH
Confidence 5788888889999999999999999999988888888888877665543322 23333444444332 34556677777
Q ss_pred HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEc
Q 014314 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~ 363 (427)
......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 263 ~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~ 342 (401)
T PTZ00424 263 ETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINY 342 (401)
T ss_pred HhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEE
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
++|.+...|+||+||+||.|+.|.|++++. .++...+..+++.+..++++++..+.
T Consensus 343 ~~p~s~~~y~qr~GRagR~g~~G~~i~l~~-~~~~~~~~~~e~~~~~~~~~~~~~~~ 398 (401)
T PTZ00424 343 DLPASPENYIHRIGRSGRFGRKGVAINFVT-PDDIEQLKEIERHYNTQIEEMPMEVA 398 (401)
T ss_pred CCCCCHHHEeecccccccCCCCceEEEEEc-HHHHHHHHHHHHHHCCcccccCcchh
Confidence 999999999999999999999999999997 56788899999999999988776543
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-61 Score=432.25 Aligned_cols=378 Identities=33% Similarity=0.530 Sum_probs=340.7
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC-------
Q 014314 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP------- 112 (427)
Q Consensus 40 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------- 112 (427)
..+.+...|.+-.+.+.+..+++..++..|+|+|+.++|.+..|+++++||+||||||.+|++|++..+....
T Consensus 68 ~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~ 147 (482)
T KOG0335|consen 68 DVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGES 147 (482)
T ss_pred ccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCccc
Confidence 3444555788888999999999999999999999999999999999999999999999999999998764321
Q ss_pred ---CCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCC
Q 014314 113 ---GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLK 189 (427)
Q Consensus 113 ---~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 189 (427)
..+.++|++|||+|+.|++.+++++.... ++++..++|+.+...+...+..+ ++|+|+||++|.+++....+.+.
T Consensus 148 ~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~ 225 (482)
T KOG0335|consen 148 GGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRG-CDILVATPGRLKDLIERGKISLD 225 (482)
T ss_pred CCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccC-ccEEEecCchhhhhhhcceeehh
Confidence 35799999999999999999999987665 88999999998888888888878 59999999999999999999999
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCC----CceEEEEEccCCccHHHHHHHhcCC-CeEEEEcCCccccccceE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPH----DKQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDEAKLTLHGLV 264 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~----~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (427)
+++++|+||||.|++..+|.+.+..+.....- ..|.++||||+|..+..++..++.+ +..+.+..... ...++.
T Consensus 226 ~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~-~~~ni~ 304 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS-TSENIT 304 (482)
T ss_pred hCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc-ccccce
Confidence 99999999999999988999999999877653 6899999999999999988888876 55555555443 446778
Q ss_pred EEEEEechhhHHHHHHHHHHhcC----CC-----eEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh
Q 014314 265 QHYIKLSELEKNRKLNDLLDALD----FN-----QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK 335 (427)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~l~~~~----~~-----~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~ 335 (427)
+....+.+..|...+.+++.... .+ +++|||.+++.|..++..|...++++..+||..++.+|.+.++.|+
T Consensus 305 q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr 384 (482)
T KOG0335|consen 305 QKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFR 384 (482)
T ss_pred eEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhh
Confidence 88888888888888888887554 23 7999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccC
Q 014314 336 EGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 336 ~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (427)
+|+..+||||++++||||+|+|+|||+||.|.+..+|+||+||+||.|+.|.++.|++ ..+....+.|.+.+.-.-+++
T Consensus 385 ~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~i~~~L~~~l~ea~q~v 463 (482)
T KOG0335|consen 385 NGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN-EKNQNIAKALVEILTEANQEV 463 (482)
T ss_pred cCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec-cccchhHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999999998 788889999999999999999
Q ss_pred CcccCC
Q 014314 416 PEQIDT 421 (427)
Q Consensus 416 ~~~~~~ 421 (427)
|+++.+
T Consensus 464 P~wl~~ 469 (482)
T KOG0335|consen 464 PQWLSE 469 (482)
T ss_pred cHHHHh
Confidence 998876
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-59 Score=409.70 Aligned_cols=364 Identities=29% Similarity=0.464 Sum_probs=324.1
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC------CCCCeEEEE
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVTALV 119 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 119 (427)
.+|.+|+|++.+++++.+.||..||-+|+.+||.++.|+|++..|.||||||.+|++|+++.+.. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 47999999999999999999999999999999999999999999999999999999999997542 345578999
Q ss_pred EeCchHHHHHHHHHHHHHhccCC-CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC-CCCCCccEEEEc
Q 014314 120 LCHTRELAYQICHEFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILD 197 (427)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~-~~~~~~~~iVvD 197 (427)
++||++||.|++..+.++..+++ .+++.-++...+..... ......++|+|+||++++.++.... ..+..++++|+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999998877654 56666666666655555 3344458999999999999888776 667899999999
Q ss_pred CCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHH
Q 014314 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR 277 (427)
Q Consensus 198 Eah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (427)
|||.++. .++...+..+...+|+..|.++||||+..++..+-+.++.+|..+............+.++.+.+.+.+|..
T Consensus 178 EADLlls-fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 178 EADLLLS-FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred hhhhhhh-cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999998 899999999999999999999999999999999999999999999988877777788899999999999998
Q ss_pred HHHHHHH-hcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC----------
Q 014314 278 KLNDLLD-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD---------- 346 (427)
Q Consensus 278 ~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~---------- 346 (427)
.+..+++ .+-.+++|||+|+.+.|..+.-.|.+.|++...++|.+|...|.-+++.|+.|-++++|||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 8888876 44669999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------CccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHH
Q 014314 347 -------------------------LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401 (427)
Q Consensus 347 -------------------------~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 401 (427)
-.+||+|+..+.+|++||+|.++..|+||+||++|.|++|.++.|+.+.+.. -.
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~-g~ 415 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF-GK 415 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh-hh
Confidence 3568999999999999999999999999999999999999999999975444 23
Q ss_pred HHHHHHhcccc
Q 014314 402 NQVQARFEVDI 412 (427)
Q Consensus 402 ~~~~~~~~~~~ 412 (427)
..++..+..+.
T Consensus 416 ~~le~~~~d~~ 426 (569)
T KOG0346|consen 416 ESLESILKDEN 426 (569)
T ss_pred hHHHHHHhhHH
Confidence 56666555543
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-59 Score=418.08 Aligned_cols=363 Identities=29% Similarity=0.500 Sum_probs=312.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC------CCCCe
Q 014314 43 IHSSGFRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQV 115 (427)
Q Consensus 43 ~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~ 115 (427)
.....|..++|++.+...|.. +++..||.+|+++||.++.|+|++|.++||||||++|++|+++.+.. ...++
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 456689999999999999985 59999999999999999999999999999999999999999987643 33456
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHF 194 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~i 194 (427)
-+||++|||+||.|+++.++++.+.+..+..+++.||...+.+...+++| ++|+|+||++|++.+.+ ..+.++++++|
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 89999999999999999999999887677788899999999999999999 59999999999997765 46778999999
Q ss_pred EEcCCcccccCCCcHHHHHHHHHhCC-------------CCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcc----
Q 014314 195 ILDECDKMLESLDMRRDVQEIFKMTP-------------HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK---- 257 (427)
Q Consensus 195 VvDEah~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---- 257 (427)
|+||+|++++ .+|...+..|+..+. ...|.+++|||+...+..++...+.+|..+..+....
T Consensus 292 VlDEaDrlle-LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 292 VLDEADRLLE-LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EecchhHHHh-ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 9999999998 899999999887652 2358899999999999999999999998887322111
Q ss_pred --------------------ccccceEEEEEEechhhHHHHHHHHHHhc----CCCeEEEEECCchhHHHHHHHHHhC--
Q 014314 258 --------------------LTLHGLVQHYIKLSELEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAELNKLLVEC-- 311 (427)
Q Consensus 258 --------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~ivf~~~~~~~~~l~~~L~~~-- 311 (427)
..+..+.++|..++...+.-.|..++.+. ...++|||+.+.+.++.-+..|...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 12234556667777766666666665443 5578999999999999888877652
Q ss_pred --------------------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchh
Q 014314 312 --------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371 (427)
Q Consensus 312 --------------------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~ 371 (427)
+.++..+||+|++++|..++..|...+..||+||++++||||+|.+++||+||+|.++++
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 345778999999999999999999988889999999999999999999999999999999
Q ss_pred hhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHh
Q 014314 372 YLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF 408 (427)
Q Consensus 372 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (427)
|+||+||++|.|.+|.+++|+.+. +.+|++.++..-
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~-Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPS-EAEYVNYLKKHH 566 (708)
T ss_pred HHHHhhhhhhccCCCceEEEeccc-HHHHHHHHHhhc
Confidence 999999999999999999999864 555888888763
No 27
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-58 Score=390.73 Aligned_cols=366 Identities=32% Similarity=0.570 Sum_probs=327.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
.+|+++.|.|++++.+..|+|..|+.+|+.|+|.++. .++.+.++..|+|||.+|.+.++.+....-..|.++.|+|+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 4799999999999999999999999999999999998 46799999999999999999999999888777899999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKM 202 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah~~ 202 (427)
++||.|+.+.+.+..++. +++..+..-+.....-. .+ ...|+++||+.+.++..+ ....+..++++|+|||+.+
T Consensus 170 rELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~-~i---~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 170 RELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN-KL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred HHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC-cc---hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh
Confidence 999999999999998876 77777665554211111 11 137999999999998877 7788899999999999999
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhhHHHHHHH
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLND 281 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 281 (427)
++..+|...-.++...++++.|++++|||+...+..++.....++..+.+..+. ..+..+.+.|+.+. ...|...+.+
T Consensus 245 i~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~~l~~ 323 (477)
T KOG0332|consen 245 IDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQALVN 323 (477)
T ss_pred hhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHHHHHH
Confidence 998899999999999999999999999999999999999999998887766554 35567778888775 4568888888
Q ss_pred HHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE
Q 014314 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (427)
Q Consensus 282 ~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi 361 (427)
+.....-++.||||.+++.|..++..|...|+.+..+||+|.-.+|..+++.|+.|..+|||+|++++||+|++.++.||
T Consensus 324 lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv 403 (477)
T KOG0332|consen 324 LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV 403 (477)
T ss_pred HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE
Confidence 77766678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC------CchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCc
Q 014314 362 NYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 417 (427)
Q Consensus 362 ~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (427)
+||.|. +.+.|+||+||+||.|+.|.++.+++.......++.+++.|+..+.++..
T Consensus 404 NydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 404 NYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred ecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999996 78899999999999999999999999999999999999999888876543
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.3e-59 Score=400.45 Aligned_cols=372 Identities=30% Similarity=0.530 Sum_probs=327.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccC--------CCCCC
Q 014314 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--------PNPGQ 114 (427)
Q Consensus 43 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~--------~~~~~ 114 (427)
.+..+|.++-+...+++.|++.|+.+|||+|-+.+|.+++|+|.+-.|-||||||++|.+|++.... ..+.+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 3445799999999999999999999999999999999999999999999999999999999876421 22344
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhcc-----CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCC
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTY-----LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLK 189 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 189 (427)
|-.||+||+|+||.|+++.+..+... +|.++.....||....++.+..+.+ .+|+|+||++|..++.+....+.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G-vHivVATPGRL~DmL~KK~~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG-VHIVVATPGRLMDMLAKKIMSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC-eeEEEcCcchHHHHHHHhhccHH
Confidence 57899999999999999999877543 3667888899999999999999988 69999999999999999999999
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK 269 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (427)
-++++.+||||++.+ .+|...+..++..+...+|+++||||+|..+..++++.+..|..+.+...+...... .+....
T Consensus 326 ~CRyL~lDEADRmiD-mGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldV-iQevEy 403 (610)
T KOG0341|consen 326 ACRYLTLDEADRMID-MGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDV-IQEVEY 403 (610)
T ss_pred HHHHhhhhhHHHHhh-ccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhH-HHHHHH
Confidence 999999999999998 899999999999999999999999999999999999999999999988776655432 222222
Q ss_pred echhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc
Q 014314 270 LSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (427)
Q Consensus 270 ~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 349 (427)
+....|.-.+.+.+... ..+++|||..+..++.+.++|--.|..++.+||+-.+++|...++.|+.|+.+|||+|++++
T Consensus 404 VkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred HHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 33444555555555443 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 350 ~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
.|+|+|++.|||+||.|...+.|+||+||+||.|++|.+.+|+....+...+-.++..+.---+++|..
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~ 551 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPV 551 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHH
Confidence 999999999999999999999999999999999999999999998888888888888776555666653
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-58 Score=409.06 Aligned_cols=362 Identities=30% Similarity=0.533 Sum_probs=292.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC-CeEEEEecCCCCcchHHHHHhhhccCCCC---------
Q 014314 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP--------- 112 (427)
Q Consensus 43 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~--------- 112 (427)
...+.|.+|+++.+++++|..+||.+|+++|..++|.+..| .|++-.|.||||||++|-+|+++.+.+..
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999998 78999999999999999999999543321
Q ss_pred --CCeE--EEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--
Q 014314 113 --GQVT--ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-- 186 (427)
Q Consensus 113 --~~~~--~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-- 186 (427)
.+++ +||++|||+||.|+.+-+...+.. +++++..++||.....+.+.+.. +++|+|+||++|+.++.....
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhh
Confidence 2234 999999999999999999998876 49999999999999988888877 589999999999999986544
Q ss_pred -CCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC-----CCceEEEEEccCCccHH---------------------HH
Q 014314 187 -SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-----HDKQVMMFSATLSKEIR---------------------PV 239 (427)
Q Consensus 187 -~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~SAT~~~~~~---------------------~~ 239 (427)
++++++++|+||+|+|.. .+....+..++..+. ..+|++.+|||+.-... .+
T Consensus 336 ~~~k~vkcLVlDEaDRmve-kghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVE-KGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhceEEEEccHHHHhh-hccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 578899999999999998 455556666665544 45799999999853211 11
Q ss_pred HHH--hcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEE
Q 014314 240 CKK--FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317 (427)
Q Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~ 317 (427)
+.. +...|..+...+... ....+....+.|...+|.-.+..++..+ ++++|||||++..+..++-.|+..++....
T Consensus 415 mk~ig~~~kpkiiD~t~q~~-ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSA-TASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHHhCccCCCeeEecCcchh-HHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 111 223444433332221 1122233333444444444444444444 489999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 318 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 318 l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+|+.|.+.+|.+.++.|++....|||||++++||||+|++.|||||-.|++...|+||.||++|++..|..++++.+.+
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e- 571 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE- 571 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHHHHHHHHhcc
Q 014314 398 SDILNQVQARFEV 410 (427)
Q Consensus 398 ~~~~~~~~~~~~~ 410 (427)
...+..|-+.+..
T Consensus 572 ~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 572 VGPLKKLCKTLKK 584 (731)
T ss_pred hHHHHHHHHHHhh
Confidence 4445555555443
No 30
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-55 Score=391.08 Aligned_cols=372 Identities=31% Similarity=0.489 Sum_probs=334.1
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-----CCCCeEEEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQVTALV 119 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-----~~~~~~~li 119 (427)
...|.+++++..|..++.+..|.+|+|+|.+++|..+.|++++-.|.||||||-+|+.|++.++.. .+.+|-.+|
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vi 301 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVI 301 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEE
Confidence 356999999999999999999999999999999999999999999999999999999999876532 245568999
Q ss_pred EeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCC
Q 014314 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDEC 199 (427)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEa 199 (427)
+|||++||.|++.++++|++.+ ++++++++||.+..++.+.+..+ +.|+||||++|+.++.-...++.+++++|+||+
T Consensus 302 lvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa 379 (731)
T KOG0339|consen 302 LVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA 379 (731)
T ss_pred EeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEech
Confidence 9999999999999999998887 99999999999999999999866 699999999999999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEE-echhhHHHH
Q 014314 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK-LSELEKNRK 278 (427)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (427)
++|.+ .+|.+.+..|....++.+|+++||||++..+..+++.++.+|+.+......... ..+.+.... .....|+.+
T Consensus 380 drmfd-mGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean-~dITQ~V~V~~s~~~Kl~w 457 (731)
T KOG0339|consen 380 DRMFD-MGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEAN-EDITQTVSVCPSEEKKLNW 457 (731)
T ss_pred hhhhc-cccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccc-cchhheeeeccCcHHHHHH
Confidence 99998 899999999999999999999999999999999999999999988776544433 334444333 445566666
Q ss_pred HHHHH-HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCC
Q 014314 279 LNDLL-DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (427)
Q Consensus 279 l~~~l-~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~ 357 (427)
+..-| .....+++|+|+.-...++.++..|+..++.+..+||++.+.+|.+++..|+.+...|||+|+++++|+|+|.+
T Consensus 458 l~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 458 LLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 65544 44466899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCC
Q 014314 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
+.||+||...++..+.||+||+||.|.+|.+++++. ..+..+...|-+.|+-.-+.+|..+.+
T Consensus 538 kTVvnyD~ardIdththrigrtgRag~kGvayTlvT-eKDa~fAG~LVnnLe~agQnVP~~l~d 600 (731)
T KOG0339|consen 538 KTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT-EKDAEFAGHLVNNLEGAGQNVPDELMD 600 (731)
T ss_pred ceeecccccchhHHHHHHhhhcccccccceeeEEec-hhhHHHhhHHHHHHhhccccCChHHHH
Confidence 999999999999999999999999999999999998 456668888889888888888876543
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-55 Score=379.79 Aligned_cols=369 Identities=40% Similarity=0.680 Sum_probs=344.2
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+|++++|.++|++.+...||+.|+.+|+.||..+..|.|+.+.+.+|+|||.+|.+++++.+........+++++|+++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtre 105 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRE 105 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHH
Confidence 47999999999999999999999999999999999999999999999999999999999999877777778999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+......+.... +.++..+.|+.+...+...+....++|+++||++++.++....+....++++|+||++.++.
T Consensus 106 La~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs- 183 (397)
T KOG0327|consen 106 LAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS- 183 (397)
T ss_pred HHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-
Confidence 9999998888887775 78888888988888777777766679999999999999988888888899999999999998
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 285 (427)
.+|...+..+++.++...|++++|||+|.++......++.+|..+.+.... .....+.+.+.......|...+..+.+
T Consensus 184 ~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~- 261 (397)
T KOG0327|consen 184 RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYR- 261 (397)
T ss_pred cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHH-
Confidence 899999999999999999999999999999999999999999999887776 457778888888888889999999998
Q ss_pred cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC
Q 014314 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 365 (427)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~ 365 (427)
...+.++||+++..+..+...|.+.++.+..+|++|.+.+|..+++.|+.|..+|||+|+.+++|+|+..+..||+|+.
T Consensus 262 -~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 262 -RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred -hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 5589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
|.....|+||+||+||.|++|.++.++. ..+...++.++++++..++++|..+.
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v~-~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFVT-EEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeeeh-HhhHHHHHhHHHhcCCcceecccchh
Confidence 9999999999999999999999999997 67888899999999999999998654
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-53 Score=423.88 Aligned_cols=351 Identities=18% Similarity=0.273 Sum_probs=276.3
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (427)
+++.+.++|.++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+...+ ..++||++||++|+.|+.+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999886543 3589999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh-cC---CCCCCCccEEEEcCCcccccCCCc
Q 014314 133 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DK---DLSLKNVRHFILDECDKMLESLDM 208 (427)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~-~~---~~~~~~~~~iVvDEah~~~~~~~~ 208 (427)
.++.+. . .++++..+.|+..... ...+..+ ++|+|+||+++...+. .+ ...++++++||+||||.+.+ .|
T Consensus 100 ~l~~l~-~-~~i~v~~~~Gdt~~~~-r~~i~~~-~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g--~f 173 (742)
T TIGR03817 100 AVRELT-L-RGVRPATYDGDTPTEE-RRWAREH-ARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG--VF 173 (742)
T ss_pred HHHHhc-c-CCeEEEEEeCCCCHHH-HHHHhcC-CCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC--cc
Confidence 999986 2 3788888888876443 3444444 6999999999875322 11 12378899999999999865 35
Q ss_pred HHHHHHH-------HHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEe-----------
Q 014314 209 RRDVQEI-------FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL----------- 270 (427)
Q Consensus 209 ~~~~~~~-------~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 270 (427)
+..+..+ ....+..+|++++|||+++... .+..++..+..+ +....... ......+...
T Consensus 174 g~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~-~~~~~~~~~p~~~~~~~~~~~ 250 (742)
T TIGR03817 174 GSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPR-GARTVALWEPPLTELTGENGA 250 (742)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCc-CceEEEEecCCcccccccccc
Confidence 5443333 3344567899999999998754 566777766544 32222111 1111111111
Q ss_pred -----chhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC--------CCCeEEecCCCCHHHHHHHHHhhhcC
Q 014314 271 -----SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKEG 337 (427)
Q Consensus 271 -----~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~~f~~~ 337 (427)
....+...+..++.. +.++||||+|++.++.+++.|++. +.++..+||++++++|..+++.|++|
T Consensus 251 ~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G 328 (742)
T TIGR03817 251 PVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG 328 (742)
T ss_pred ccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC
Confidence 112344555566553 579999999999999999988763 56788999999999999999999999
Q ss_pred CCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC-ccHHHHHHHHHHhccccccC
Q 014314 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 338 ~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 415 (427)
++++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++++.... .+..++...++.++..++..
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999888643 45556666777777766553
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-54 Score=411.51 Aligned_cols=376 Identities=31% Similarity=0.533 Sum_probs=335.3
Q ss_pred CcccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-----CCC
Q 014314 39 GYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPG 113 (427)
Q Consensus 39 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-----~~~ 113 (427)
...+.+..+|.+.+++..++..++++|+..|+++|.+|||+++.|+++|..|.||||||++|++|++.+... .+.
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 334455668999999999999999999999999999999999999999999999999999999999976532 234
Q ss_pred CeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC---CCC
Q 014314 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS---LKN 190 (427)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~---~~~ 190 (427)
+|-++|++||++|+.|+.++++.|+... ++++++++|+.....+...+..+ ..|+||||+++..++-.+... +.+
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccc
Confidence 6789999999999999999999999885 99999999999999999999999 699999999999977655444 445
Q ss_pred ccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEe
Q 014314 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 270 (427)
Q Consensus 191 ~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (427)
+.++|+||||++.+ .+|.+....|+..+++.+|++++|||+|..+..++...+..|+.+.+.... .....+.+.+..+
T Consensus 516 ~t~lv~deaDrmfd-mgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~ 593 (997)
T KOG0334|consen 516 VTYLVLDEADRMFD-MGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVC 593 (997)
T ss_pred cceeeechhhhhhe-eccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEe
Confidence 55999999999996 899999999999999999999999999999999999999999987766433 3345556666666
Q ss_pred c-hhhHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc
Q 014314 271 S-ELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 348 (427)
Q Consensus 271 ~-~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 348 (427)
. +..|...+..++... ..+++||||.....|..+.+.|.+.|+.+..+||+.++.+|..+++.|+++...+||+|+++
T Consensus 594 ~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvv 673 (997)
T KOG0334|consen 594 AIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVV 673 (997)
T ss_pred cCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhh
Confidence 6 788888888888644 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCccc
Q 014314 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 349 ~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
++|+|++.+..||+|++|....+|+||.||+||+|+.|.+++|+.+ ++..+...|.+++...-+++|..+
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCchHH
Confidence 9999999999999999999999999999999999999999999987 888889999999977777777543
No 34
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-53 Score=378.47 Aligned_cols=360 Identities=26% Similarity=0.370 Sum_probs=294.3
Q ss_pred CCCCCCCCHHH----------HHHHHhCCCCCCchHHHHhHhhhhc---------CCeEEEEecCCCCcchHHHHHhhhc
Q 014314 47 GFRDFLLKPEL----------LRAIVDSGFEHPSEVQHECIPQAIL---------GMDVICQAKSGMGKTAVFVLSTLQQ 107 (427)
Q Consensus 47 ~~~~~~l~~~l----------~~~l~~~~~~~~~~~Q~~~i~~~~~---------~~~~li~~~tGsGKT~~~~~~~~~~ 107 (427)
.|..++.+..+ .+++.++++.++.|+|..++|+++. .+|++|.||||||||++|.+|+++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 35556655543 4458999999999999999999964 5789999999999999999999999
Q ss_pred cCCC-CCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCC----cEEEechHHHHHHHh
Q 014314 108 TEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP----QIVVGTPGRILALAR 182 (427)
Q Consensus 108 ~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~I~v~T~~~l~~~~~ 182 (427)
+... -+..+++||+|+++|+.|+++.|..+.... ++.|..+.|..+...+...+.+..+ +|+|+||++|.++++
T Consensus 208 L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 8876 355799999999999999999999998886 8999999999999988888877555 999999999999988
Q ss_pred -cCCCCCCCccEEEEcCCcccccCCCcHHHHHHHH----------------------------------HhCCCCceEEE
Q 014314 183 -DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF----------------------------------KMTPHDKQVMM 227 (427)
Q Consensus 183 -~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~v~ 227 (427)
...+.+++++++||||||++++ ..|..-+..+. ....+..+.++
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~-qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLD-QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred CCCCcchhhceEEEechHHHHHH-HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 5678899999999999999986 23322221111 11122235678
Q ss_pred EEccCCccHHHHHHHhcCCCeEEEEcC---CccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHH
Q 014314 228 FSATLSKEIRPVCKKFMQDPMEIYVDD---EAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304 (427)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l 304 (427)
+|||+...-..+...-+..|....+.. .....+..+.++.+......+.-.+..++......++|+|+++...+..+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl 445 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRL 445 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHH
Confidence 899988776666666666664443332 22223344455555555666777888899888889999999999999999
Q ss_pred HHHHH----hCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccC
Q 014314 305 NKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380 (427)
Q Consensus 305 ~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 380 (427)
+..|+ ..+..+..+.|.++...|...++.|..|++.+|||+++++||+|+.++++||+||+|.+..+|+||+||++
T Consensus 446 ~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 446 AHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred HHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccc
Confidence 99887 23567777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCCccHHHHHHHHHHh
Q 014314 381 RFGTKGLAITFVSSASDSDILNQVQARF 408 (427)
Q Consensus 381 R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (427)
|+|+.|.|+.+++..+...+.+.++...
T Consensus 526 RAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 526 RAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred cccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999999877777777666643
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8.3e-54 Score=389.40 Aligned_cols=361 Identities=32% Similarity=0.544 Sum_probs=328.3
Q ss_pred cccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe
Q 014314 42 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (427)
Q Consensus 42 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (427)
.....+|+++.|...++..|...+|..|+++|..|||.++.+.|++|++..|+|||++|.+.+++.+......+.++|++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~ 100 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVT 100 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEe
Confidence 33455799999999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc
Q 014314 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201 (427)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~ 201 (427)
|||+++.|+.+.+..++..+.|+++.++.||.....+...+.. ++|+|+||+++..+++...++.+.++++|+||||.
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK 178 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhcCCCccceeEEEeccHHh
Confidence 9999999999999999998889999999999988877666655 48999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEech--------h
Q 014314 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE--------L 273 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 273 (427)
+.+...|...+..|+..+|..+|++.+|||.|.++...+..+|.+|..+....... .+-.+.+++..... .
T Consensus 179 L~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~-~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 179 LMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV-QLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred hhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc-eeechhheeeeccCCcchHHHHH
Confidence 99867899999999999999999999999999999999999999998887766543 33445555544332 2
Q ss_pred hHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCC
Q 014314 274 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (427)
Q Consensus 274 ~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 353 (427)
.|.+.|..+++.++..+.||||+....|+-++.+|...|+.+.++.|.|++.+|..+++.+++-..+|||+|+.-+||+|
T Consensus 258 lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284|consen 258 LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred HHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCC
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHH
Q 014314 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 405 (427)
Q Consensus 354 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 405 (427)
-++++.||+.|.|.+..+|.||+|||||.|..|.+++|+....+..-+..+.
T Consensus 338 a~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~ 389 (980)
T KOG4284|consen 338 ADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMA 389 (980)
T ss_pred ccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHH
Confidence 9999999999999999999999999999999999999998776655544443
No 36
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-53 Score=367.35 Aligned_cols=367 Identities=31% Similarity=0.494 Sum_probs=332.5
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEEEEeCc
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHT 123 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~ 123 (427)
+++|..++|+..+.+++.+.||+.|+|+|++.+|.++.+++++-.+-||||||.+|++|+++.+... ..+.+++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 7889999999999999999999999999999999999999999999999999999999999987644 355699999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++.+.... +++..+++|+.+..++...+..+ +||+++||++++.+.-.-.+.++.+.+||+||++.+.
T Consensus 100 reLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~n-pDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNEN-PDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccC-CCEEEecCceeeeeehheeccccceeeeeehhhhHHH
Confidence 999999999999998876 88999999999999999888766 6999999999998777667889999999999999999
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 283 (427)
. .+|..++.+++..++...|+++||||+|..+..+++.-+.+|..+.++-+.+.. ..+...+..+...+|...|..++
T Consensus 178 e-mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkis-e~lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 178 E-MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKIS-ELLKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred h-hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcc-hhhhhheeeeccHHHHHHHHHHH
Confidence 8 899999999999999999999999999999999999999999988866555433 44455667778888888888887
Q ss_pred HhcC-CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 284 DALD-FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 284 ~~~~-~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
.... .++++|||++...++++...|+..|+.+..++|.+.+..|...+..|+.++..+||.|+++++|+|+|-.+.||+
T Consensus 256 ~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 256 GGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred hccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc
Confidence 7653 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCC
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 416 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (427)
||+|.+..-|+||+||+.|+|+.|.++.++.+ ++..++-.|...++..+.--+
T Consensus 336 yd~p~~~klFvhRVgr~aragrtg~aYs~V~~-~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 336 YDFPPDDKLFVHRVGRVARAGRTGRAYSLVAS-TDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred ccCCCCCceEEEEecchhhccccceEEEEEec-ccchhhhhhhhhcCCceeecc
Confidence 99999999999999999999999999999984 666777888888887665433
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.2e-51 Score=404.98 Aligned_cols=330 Identities=20% Similarity=0.243 Sum_probs=258.1
Q ss_pred CCCCCHHHHHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHH
Q 014314 50 DFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (427)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (427)
.|+....+...++. .|+..++|+|.++|++++.|+|+++.+|||+|||++|++|++... ..+|||+|+++|+.
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~------GiTLVISPLiSLmq 514 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP------GITLVISPLVSLIQ 514 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC------CcEEEEeCHHHHHH
Confidence 57777777777776 499999999999999999999999999999999999999998753 27999999999998
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc-----CCCcEEEechHHHHH---HHhcC--CCCCCCccEEEEcC
Q 014314 129 QICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN-----ECPQIVVGTPGRILA---LARDK--DLSLKNVRHFILDE 198 (427)
Q Consensus 129 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~I~v~T~~~l~~---~~~~~--~~~~~~~~~iVvDE 198 (427)
++...+... +++...+.++.....+...+.. +.++|+|+||+++.. ++..- ......+.+|||||
T Consensus 515 DQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDE 589 (1195)
T PLN03137 515 DQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDE 589 (1195)
T ss_pred HHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCc
Confidence 665555442 7888999998887666554432 557999999999853 12111 11234578899999
Q ss_pred CcccccC-CCcHHHHHHH--HHhCCCCceEEEEEccCCccHHHHHHHhcCCC-eEEEEcCCccccccceEEEEEEechh-
Q 014314 199 CDKMLES-LDMRRDVQEI--FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP-MEIYVDDEAKLTLHGLVQHYIKLSEL- 273 (427)
Q Consensus 199 ah~~~~~-~~~~~~~~~~--~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (427)
||+++.| .+|++.+..+ +....+..+++++|||++..+...+...+... ..+....... .++ .+......
T Consensus 590 AHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R---pNL--~y~Vv~k~k 664 (1195)
T PLN03137 590 AHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR---PNL--WYSVVPKTK 664 (1195)
T ss_pred chhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc---cce--EEEEeccch
Confidence 9999986 4688877653 33334567899999999988877555544322 1222221111 122 12112221
Q ss_pred hHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccC
Q 014314 274 EKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (427)
Q Consensus 274 ~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 352 (427)
.....+..++... ...+.||||.+++.++.+++.|+..|+.+..|||+|++.+|..+++.|..|+++|||||+++++||
T Consensus 665 k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGI 744 (1195)
T PLN03137 665 KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGI 744 (1195)
T ss_pred hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCC
Confidence 2234455555433 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 353 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
|+|++++||||++|.|.+.|+||+|||||.|..|.|++|++..
T Consensus 745 DkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 745 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred CccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 9999999999999999999999999999999999999999754
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.8e-51 Score=387.95 Aligned_cols=317 Identities=21% Similarity=0.260 Sum_probs=247.1
Q ss_pred CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.||..|+|+|.+++++++.|+++++.+|||+|||++|++|++... ..+||++|+++|+.|+.+.++.+ +
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~------~~~lVi~P~~~L~~dq~~~l~~~-----g 75 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD------GITLVISPLISLMEDQVLQLKAS-----G 75 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC------CcEEEEecHHHHHHHHHHHHHHc-----C
Confidence 499999999999999999999999999999999999999998642 27899999999999998888754 6
Q ss_pred ceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHH-hcCCC-CCCCccEEEEcCCcccccC-CCcHHHHHHH--
Q 014314 144 IKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALA-RDKDL-SLKNVRHFILDECDKMLES-LDMRRDVQEI-- 215 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~-~~~~~-~~~~~~~iVvDEah~~~~~-~~~~~~~~~~-- 215 (427)
+.+..+.++....... ..+..+.++|+++||+++.... ....+ ...++++||+||||+++++ .+|++.+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 7777887776554332 2334566799999999875421 00111 4578899999999999875 4577665554
Q ss_pred -HHhCCCCceEEEEEccCCccHHHHHHHhc--CCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHH-hcCCCeE
Q 014314 216 -FKMTPHDKQVMMFSATLSKEIRPVCKKFM--QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-ALDFNQV 291 (427)
Q Consensus 216 -~~~~~~~~~~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~ 291 (427)
...+ +..+++++|||+++.....+...+ ..+..+. ..... .++. .............+..++. ..++..+
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~-~s~~r---~nl~-~~v~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFC-TSFDR---PNLY-YEVRRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe-CCCCC---CCcE-EEEEeCCccHHHHHHHHHHHhcCCCce
Confidence 3333 467899999999988765554443 2333322 21111 1111 1111122233444555554 4455667
Q ss_pred EEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchh
Q 014314 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371 (427)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~ 371 (427)
||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||++++|.|...
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCccEEEEEecCCcc
Q 014314 372 YLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 372 ~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
|+||+||+||.|..|.|++|+.+.+.
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHH
Confidence 99999999999999999999986433
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=9.2e-50 Score=390.69 Aligned_cols=326 Identities=18% Similarity=0.264 Sum_probs=255.9
Q ss_pred CCHHHHHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHH
Q 014314 53 LKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (427)
Q Consensus 53 l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (427)
+.+...+.|++ .||..|+|+|++++++++.|+++++.+|||+|||++|++|++.... .+||++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g------~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDG------LTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCC------CEEEEecHHHHHHHHH
Confidence 34444555655 4999999999999999999999999999999999999999986521 6899999999999998
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-CC
Q 014314 132 HEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LD 207 (427)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~-~~ 207 (427)
+.++.+ ++.+..+.++....... ..+..+..+++++||+++........+...++++|||||||++..+ .+
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 888764 67777777776654433 2345566799999999987422222233457899999999999875 45
Q ss_pred cHHHHHHH---HHhCCCCceEEEEEccCCccHHHHHHHhc--CCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHH
Q 014314 208 MRRDVQEI---FKMTPHDKQVMMFSATLSKEIRPVCKKFM--QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (427)
Q Consensus 208 ~~~~~~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (427)
|++.+..+ ...+ +..+++++|||++......+...+ .++.. ....... .++ .+.......+...+..+
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~~r---~nl--~~~v~~~~~~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFDR---PNI--RYTLVEKFKPLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCCCC---Ccc--eeeeeeccchHHHHHHH
Confidence 76655444 3333 467899999999987665444333 23332 2222211 111 12222223344556667
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
+....+.++||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCc
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
+++|.|..+|+||+||+||.|.+|.|++|+++.+
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 9999999999999999999999999999998643
No 40
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-50 Score=367.26 Aligned_cols=377 Identities=31% Similarity=0.426 Sum_probs=312.5
Q ss_pred cccCCCCCC----CCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-----CC
Q 014314 42 GIHSSGFRD----FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NP 112 (427)
Q Consensus 42 ~~~~~~~~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-----~~ 112 (427)
+.....|.+ +..++.+++.+.+.+|..|+|+|.+++|.++.+++++.|+|||||||++|.+|++.++.. +.
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 334455665 668889999999999999999999999999999999999999999999999999998653 24
Q ss_pred CCeEEEEEeCchHHHHHHHHHHHHHh--ccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCC
Q 014314 113 GQVTALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSL 188 (427)
Q Consensus 113 ~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~--~~~ 188 (427)
.+.+++|+.|+++|+.|++.++.++. ... +.+...+............+....++|+++||.++...+.... +++
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 56799999999999999999999987 322 2333333322211111112222225999999999998887664 788
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCC-CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY 267 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~-~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (427)
..+.++|+||+|.+.+...|..++..++..+.. ...+-+||||.+..+..++...+.++..+.+....... ..+.+..
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~-~~V~Qel 365 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSAN-ETVDQEL 365 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHh-hhhhhhh
Confidence 999999999999999844788888888877654 45667899999999999999999988887766554432 2333333
Q ss_pred -EEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHH-HhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEe
Q 014314 268 -IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL-VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345 (427)
Q Consensus 268 -~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L-~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T 345 (427)
.-.....|.-.+..++...-..+++||+.+.+.|..+...| .-.++.+..+||..++.+|...++.|+.|+++|||||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 33456677888888888887789999999999999999999 6679999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCC
Q 014314 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
+++++|+|+.++++||+||.|.+..+|+||+||+||.|+.|.+++||. +.+..+++.+++-....--++|+++..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt-d~d~~~ir~iae~~~~sG~evpe~~m~ 520 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT-DQDMPRIRSIAEVMEQSGCEVPEKIMG 520 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec-cccchhhhhHHHHHHHcCCcchHHHHh
Confidence 999999999999999999999999999999999999999999999997 588899999999888888888887653
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.3e-49 Score=386.35 Aligned_cols=319 Identities=23% Similarity=0.317 Sum_probs=256.5
Q ss_pred HHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 59 RAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 59 ~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
+.|++ .||..++|+|+++++.++.|+++++++|||+|||++|++|++.... .++|++|+++|+.|+.+.++.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g------~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKG------LTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCC------cEEEEcCCHHHHHHHHHHHHHc
Confidence 34554 5999999999999999999999999999999999999999986421 6899999999999998888775
Q ss_pred hccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-CCcHHHHH
Q 014314 138 STYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQ 213 (427)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~-~~~~~~~~ 213 (427)
++.+..++++.+...... .+..+..+|+++||+++............++++||+||||++..+ .+|++.+.
T Consensus 77 -----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 -----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 678888888876654433 344566799999999987533333345568899999999999875 46777665
Q ss_pred HH---HHhCCCCceEEEEEccCCccHHHHHHHhcC--CCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCC
Q 014314 214 EI---FKMTPHDKQVMMFSATLSKEIRPVCKKFMQ--DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDF 288 (427)
Q Consensus 214 ~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 288 (427)
.+ ...++ ..+++++|||++......+...+. ++..+ ...... .++ .+.......+...+..++....+
T Consensus 152 ~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r---~nl--~~~v~~~~~~~~~l~~~l~~~~~ 224 (591)
T TIGR01389 152 RLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF-ITSFDR---PNL--RFSVVKKNNKQKFLLDYLKKHRG 224 (591)
T ss_pred HHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCCCC---CCc--EEEEEeCCCHHHHHHHHHHhcCC
Confidence 55 33444 345999999999887766555543 23222 221111 111 12222334456677777777777
Q ss_pred CeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDS 368 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s 368 (427)
.++||||++++.++.+++.|...|+++..+||+|+..+|..+++.|.+|+++|||||+++++|+|+|++++||++++|.|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s 304 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN 304 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccCCCCCccEEEEEecCC
Q 014314 369 ADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 369 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
...|+|++||+||.|..+.|+++++..
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHH
Confidence 999999999999999999999888753
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-48 Score=389.74 Aligned_cols=356 Identities=21% Similarity=0.289 Sum_probs=262.7
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhh-hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.|+++++++.+++.+.+.|+..|+|+|.++++. +..|+++++++|||||||++|.++++..+..+ .+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~---~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG---GKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC---CcEEEEeChHH
Confidence 478889999999999999999999999999998 66799999999999999999999999988643 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+++.++++... ++++..++|+...... .+ +.++|+|+||+++..++++....+.++++||+||+|.+.+
T Consensus 79 La~q~~~~~~~~~~~--g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d- 151 (737)
T PRK02362 79 LASEKFEEFERFEEL--GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS- 151 (737)
T ss_pred HHHHHHHHHHHhhcC--CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC-
Confidence 999999999987542 7899999998654321 12 2259999999999999887666678999999999999876
Q ss_pred CCcHHHHHHHHH---hCCCCceEEEEEccCCccHHHHHHHhcCCC-------eEE--EEcCCccccccceEEEEEEechh
Q 014314 206 LDMRRDVQEIFK---MTPHDKQVMMFSATLSKEIRPVCKKFMQDP-------MEI--YVDDEAKLTLHGLVQHYIKLSEL 273 (427)
Q Consensus 206 ~~~~~~~~~~~~---~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~ 273 (427)
.+++..+..++. ......|++++|||+++. ..+..++.... ..+ .+.......... .... ....
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~--~~~~ 227 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQRE--VEVP 227 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-cccc--CCCc
Confidence 566766665543 345678999999999863 34443332211 100 000000000000 0000 1111
Q ss_pred hHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhC------------------------------------CCCeE
Q 014314 274 EKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVEC------------------------------------NFPSI 316 (427)
Q Consensus 274 ~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~------------------------------------~~~~~ 316 (427)
.+...+..+.+.. .++++||||++++.|+.+++.|... ...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 228 SKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred cchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 1122222222222 5689999999999999988887643 13678
Q ss_pred EecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----cC-----CCCCchhhhhcccccCCCCCc--
Q 014314 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD-----MPDSADTYLHRVGRAGRFGTK-- 385 (427)
Q Consensus 317 ~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~-- 385 (427)
.+|++|++.+|..+++.|++|.++|||||+++++|+|+|..++||. |+ .|.+..+|.||+|||||.|.+
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999996 55 578999999999999999865
Q ss_pred cEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 386 GLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
|.+++++.+.++ ..+.+++.+..+..++-..
T Consensus 388 G~~ii~~~~~~~--~~~~~~~~l~~~~~~i~S~ 418 (737)
T PRK02362 388 GEAVLLAKSYDE--LDELFERYIWADPEDVRSK 418 (737)
T ss_pred ceEEEEecCchh--HHHHHHHHHhCCCCceeec
Confidence 889998865322 2233344443344443333
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-47 Score=387.30 Aligned_cols=355 Identities=23% Similarity=0.304 Sum_probs=253.9
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC------CCCeEEEEEeCchHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTREL 126 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L 126 (427)
+++.+.+.+.+ +|..|+|+|+++++.++.|+++++++|||||||++|++|++..+... ..++++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 78999999999999999999999999999999999999999865421 235689999999999
Q ss_pred HHHHHHHHHH-------Hh----ccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccE
Q 014314 127 AYQICHEFER-------FS----TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRH 193 (427)
Q Consensus 127 ~~q~~~~~~~-------~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~--~~~~~~~ 193 (427)
+.|+++.+.. +. ...+++++.+.+|+.....+...+.+. ++|+|+||++|..++..... .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~-p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKP-PHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC-CCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 9999886653 22 222467899999998877766666555 69999999999887765433 4789999
Q ss_pred EEEcCCcccccCCCcHH----HHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCC-------CeEEEEcCCccccccc
Q 014314 194 FILDECDKMLESLDMRR----DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD-------PMEIYVDDEAKLTLHG 262 (427)
Q Consensus 194 iVvDEah~~~~~~~~~~----~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 262 (427)
||+||+|.+.+ ...+. .+.++........|++++|||+++. ......+... +..+. ..........
T Consensus 176 VVIDE~H~l~~-~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i 252 (876)
T PRK13767 176 VIVDEIHSLAE-NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDI 252 (876)
T ss_pred EEEechhhhcc-CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceE
Confidence 99999999986 33333 3444445555678999999999863 3333333221 11111 1110000000
Q ss_pred -eE---EEEEEechhh----HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC------CCCeEEecCCCCHHHHH
Q 014314 263 -LV---QHYIKLSELE----KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERL 328 (427)
Q Consensus 263 -~~---~~~~~~~~~~----~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~ 328 (427)
.. .......... ....+..+++ ..+++||||+|++.|+.++..|+.. +..+..+||++++++|.
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 00 0000011111 1222333332 3578999999999999999999873 46789999999999999
Q ss_pred HHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC-CCccEEEEEecCCcc-HHHHHHHHH
Q 014314 329 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVSSASD-SDILNQVQA 406 (427)
Q Consensus 329 ~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~-~~~~~~~~~ 406 (427)
.+++.|++|++++||||+++++|+|+|++++||+++.|.+..+|+||+||+||. |..+.+.++....++ .+....++.
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~ 410 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKK 410 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 444455555543333 233333444
Q ss_pred Hhcccccc
Q 014314 407 RFEVDIKE 414 (427)
Q Consensus 407 ~~~~~~~~ 414 (427)
..+..+++
T Consensus 411 ~~~~~ie~ 418 (876)
T PRK13767 411 AREGKIDR 418 (876)
T ss_pred HHhCCCCC
Confidence 44444443
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.5e-47 Score=378.99 Aligned_cols=335 Identities=19% Similarity=0.253 Sum_probs=257.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhh-hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.|+++++++.+.+.+.+.|+..|+|+|.++++. ++.|+++++++|||||||+++.+|++..+...+ .++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~--~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG--GKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC--CeEEEEeChHH
Confidence 467889999999999999999999999999986 778999999999999999999999998765433 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+++.++.+.. . ++++..++|+...... .+ +.++|+|+||+++..++++....++++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~- 152 (720)
T PRK00254 80 LAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS- 152 (720)
T ss_pred HHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC-
Confidence 99999999988643 3 7899999998764322 22 2369999999999998887666788999999999999976
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccc--cceEEEEEEech-------hhHH
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL--HGLVQHYIKLSE-------LEKN 276 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~ 276 (427)
..++..+..++..+....|++++|||+++. ..+..++...... ........ ....+.+..... ....
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl~~~~~~---~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWLNAELVV---SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHhCCcccc---CCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 577888888888888889999999999863 5555443222110 00000000 000111111111 1111
Q ss_pred HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHh---------------------------------CCCCeEEecCCCC
Q 014314 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE---------------------------------CNFPSICIHSGMS 323 (427)
Q Consensus 277 ~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~---------------------------------~~~~~~~l~~~~~ 323 (427)
..+.+.+. .++++||||++++.|+.++..|.. ....+..+|++|+
T Consensus 229 ~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 229 SLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 23333333 357999999999999887766632 1235889999999
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE-------cCCCC-CchhhhhcccccCCCC--CccEEEEEec
Q 014314 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------YDMPD-SADTYLHRVGRAGRFG--TKGLAITFVS 393 (427)
Q Consensus 324 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~-------~~~~~-s~~~~~Q~~GR~~R~g--~~g~~~~~~~ 393 (427)
+.+|..+.+.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999984 34333 5678999999999965 6799999987
Q ss_pred CCc
Q 014314 394 SAS 396 (427)
Q Consensus 394 ~~~ 396 (427)
+.+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 543
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.5e-45 Score=354.17 Aligned_cols=354 Identities=25% Similarity=0.306 Sum_probs=277.5
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-----CCCeEEEEEeCchHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELA 127 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~ 127 (427)
|++.+.+.+... |..||+.|.+|++.+..|++++|.||||||||+++++|++..+... ..+..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 688899988888 9999999999999999999999999999999999999999987655 3457899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCccEEEEcCCcccccC
Q 014314 128 YQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 128 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~--~~~~~~~~~iVvDEah~~~~~ 205 (427)
..+.+.++.+.... |+.+.+.+|++......+...+. |+|+++||++|.-++... .-.+.++++||+||.|.+.++
T Consensus 87 ~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~P-PdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 87 NDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNP-PHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCC-CcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999998887 99999999999887777666665 799999999998877653 235889999999999999863
Q ss_pred ---CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCC--CeEEEEcCCccccccceEEEEE-----EechhhH
Q 014314 206 ---LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD--PMEIYVDDEAKLTLHGLVQHYI-----KLSELEK 275 (427)
Q Consensus 206 ---~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 275 (427)
....-.+.++....+ ..|.|++|||..+. ...++.+... +..+......+...-.+..... .......
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHH
Confidence 112233555555555 89999999999843 4555555544 3444333322211111100000 1111224
Q ss_pred HHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCC-CCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCC
Q 014314 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (427)
Q Consensus 276 ~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~-~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~ 354 (427)
...+.++++.+ ..++||+||+..++.++..|++.+ ..+..+||.++.+.|..+.+.|++|+.+++|||+.++-|+|+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 45566666665 489999999999999999999987 888899999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCchhhhhcccccCC-CCCccEEEEEecCC-ccHHHHHHHHHHhccccc
Q 014314 355 ERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAITFVSSA-SDSDILNQVQARFEVDIK 413 (427)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R-~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 413 (427)
.+++.||+++.|+++..++||+||+|+ .|....++++..+. +-.++.......+.-++.
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le 381 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLE 381 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999996 56666777776542 233333444555555554
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.4e-44 Score=360.39 Aligned_cols=323 Identities=21% Similarity=0.206 Sum_probs=250.2
Q ss_pred CCCCHHHHHHHHh-CCCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 51 FLLKPELLRAIVD-SGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 51 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
++.+....+.+.+ .+| .||+.|.++++.++.+ ++.+++|+||||||.+++.+++..+..+ .+++|++||
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT 509 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPT 509 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCc
Confidence 3445566666665 478 5999999999999985 6899999999999999999998877544 389999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah 200 (427)
++||.|+++.+++++..+ ++++..++|+.+.... ...+.++.++|+|+||..+ .....+.+++++|+||+|
T Consensus 510 ~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 510 TLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccc
Confidence 999999999999887765 6788888887765433 3344556689999999533 245678899999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHH
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (427)
++.. .....++..+...++++||||+.+...........++..+...+....+ +...+...........+.
T Consensus 584 rfgv------~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~---V~t~v~~~~~~~i~~~i~ 654 (926)
T TIGR00580 584 RFGV------KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLP---VRTFVMEYDPELVREAIR 654 (926)
T ss_pred ccch------hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccc---eEEEEEecCHHHHHHHHH
Confidence 7532 2334455566788999999998776555544444555555544333221 222222222211111121
Q ss_pred HHHHhcCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCC
Q 014314 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358 (427)
Q Consensus 281 ~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~ 358 (427)
..+ ..+++++|||++++.++.+++.|++. ++++..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 655 ~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 REL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 111 24689999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-CchhhhhcccccCCCCCccEEEEEecC
Q 014314 359 IVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 359 ~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
+||+++.|. +..+|.||+||+||.|+.|.|++++.+
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 999999865 677999999999999999999999864
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-45 Score=365.65 Aligned_cols=337 Identities=20% Similarity=0.276 Sum_probs=248.9
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
.|.++++++.+++.+.+.+|. |+++|.++++.+..++++++++|||||||+++.++++..+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 367889999999999999986 9999999999999999999999999999999999998877543 289999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCC
Q 014314 127 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206 (427)
Q Consensus 127 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~ 206 (427)
+.|+++.++++... +.++...+|+...... .+ .. ++|+|+||+++..+++++...+.++++||+||+|.+.+ .
T Consensus 78 a~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~--~~-~~-~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d-~ 150 (674)
T PRK01172 78 AMEKYEELSRLRSL--GMRVKISIGDYDDPPD--FI-KR-YDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD-E 150 (674)
T ss_pred HHHHHHHHHHHhhc--CCeEEEEeCCCCCChh--hh-cc-CCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC-C
Confidence 99999999886532 7788888887654322 12 22 59999999999998888776788999999999999876 4
Q ss_pred CcHHHHHHHH---HhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEE--EEEechhh-HHHHHH
Q 014314 207 DMRRDVQEIF---KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH--YIKLSELE-KNRKLN 280 (427)
Q Consensus 207 ~~~~~~~~~~---~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~ 280 (427)
.++..+..++ +..+...|++++|||+++. ..+..++........ ....+......+ ........ ....+.
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~~~~---~r~vpl~~~i~~~~~~~~~~~~~~~~~~~ 226 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLIKSN---FRPVPLKLGILYRKRLILDGYERSQVDIN 226 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCccCCC---CCCCCeEEEEEecCeeeecccccccccHH
Confidence 5555555553 3455678999999999863 445443322211100 000000000000 00010000 111122
Q ss_pred HHHHh--cCCCeEEEEECCchhHHHHHHHHHhC-------------------------CCCeEEecCCCCHHHHHHHHHh
Q 014314 281 DLLDA--LDFNQVVIFVKSVSRAAELNKLLVEC-------------------------NFPSICIHSGMSQEERLTRYKG 333 (427)
Q Consensus 281 ~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------~~~~~~l~~~~~~~~r~~~~~~ 333 (427)
.++.. ..++++||||++++.++.+++.|... ...+..+||++++.+|..+++.
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~ 306 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEM 306 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHH
Confidence 33332 24689999999999999999888653 1247789999999999999999
Q ss_pred hhcCCCcEEEEeCCccccCCCCCCCEEEEcCC---------CCCchhhhhcccccCCCCC--ccEEEEEecCCccHH
Q 014314 334 FKEGNKRILVATDLVGRGIDIERVNIVINYDM---------PDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSD 399 (427)
Q Consensus 334 f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~ 399 (427)
|++|.++|||||+++++|+|+|+.. ||+.+. |.+..+|.||+|||||.|. .|.+++++.+.++.+
T Consensus 307 f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~ 382 (674)
T PRK01172 307 FRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYD 382 (674)
T ss_pred HHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHH
Confidence 9999999999999999999999865 444442 4578899999999999984 677888876544333
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.5e-45 Score=338.94 Aligned_cols=322 Identities=21% Similarity=0.296 Sum_probs=254.6
Q ss_pred HHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 59 RAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 59 ~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
..|+. .|+..+++-|.++|..++.++++++.+|||.|||+||.+|++-.-. .+|||+|..+|...+.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G------~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEG------LTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCC------CEEEECchHHHHHHHHHHHHHc
Confidence 44554 3899999999999999999999999999999999999999988722 7899999999998888888775
Q ss_pred hccCCCceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-CCcHHHHH
Q 014314 138 STYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQ 213 (427)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~-~~~~~~~~ 213 (427)
|+.+..+.+..+..+.... +..+..++++-+|+++..-.....+.-..+.+++|||||+++.| ++|++.+.
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 7888888887665554433 44566799999999987633322233456788999999999987 67998877
Q ss_pred HHH---HhCCCCceEEEEEccCCccHHHHHHHhcC-CCeEEEEcCCccccccceEEEEEEe-chhhHHHHHHHHHHhcCC
Q 014314 214 EIF---KMTPHDKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLDALDF 288 (427)
Q Consensus 214 ~~~---~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~ 288 (427)
.+- ..++ +.+++++|||.++.+...+...+. ....+...+... +++....... ....+...+.. ......
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR---pNi~~~v~~~~~~~~q~~fi~~-~~~~~~ 230 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR---PNLALKVVEKGEPSDQLAFLAT-VLPQLS 230 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC---chhhhhhhhcccHHHHHHHHHh-hccccC
Confidence 664 4444 678999999999888776665544 222223222222 1111111111 12222222222 124455
Q ss_pred CeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDS 368 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s 368 (427)
+..||||.|++.++.+++.|...|+++..||++|+.++|..+.+.|.+++++|+|||.++++|||.|++++||||+.|.|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCC
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccCCCCCccEEEEEecCCc
Q 014314 369 ADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 369 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
.++|.|.+|||||.|.+..|++++++.+
T Consensus 311 ~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 311 IESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHHHHHHhhccCCCCcceEEEeecccc
Confidence 9999999999999999999999998654
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.7e-44 Score=346.74 Aligned_cols=316 Identities=20% Similarity=0.255 Sum_probs=236.6
Q ss_pred CCCCCCchHHHHhHhhhhcCC-eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEE-EEeCchHHHHHHHHHHHHHhccC
Q 014314 64 SGFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTAL-VLCHTRELAYQICHEFERFSTYL 141 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l-il~P~~~L~~q~~~~~~~~~~~~ 141 (427)
+||+ |+|+|.++++.++.|+ ++++.+|||||||.++.++++... .....++.| +++|+|+|+.|+++.++++.+..
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-ccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4887 9999999999999998 578889999999997665555332 222233444 57799999999999999988754
Q ss_pred C----------------------CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhc--------CCC---C
Q 014314 142 P----------------------DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARD--------KDL---S 187 (427)
Q Consensus 142 ~----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~-~~~~--------~~~---~ 187 (427)
+ .+++..++||.+...+...+..+ ++|+|+|++.+.+ .+.+ ..+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~-p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~ 168 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHR-PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGF 168 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCC-CcEEEECHHHHcCCccccccccccccccchhhh
Confidence 2 47899999999998888888766 6999999766644 1110 011 2
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhC--CC---CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccc
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMT--PH---DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG 262 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~--~~---~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (427)
+.+++++|+|||| ++ .+|...+..|.+.. +. .+|+++||||++..+......++.++..+.+... ......
T Consensus 169 L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~-~l~a~k 244 (844)
T TIGR02621 169 LGQDALIVHDEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK-RLAAKK 244 (844)
T ss_pred hccceEEEEehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc-cccccc
Confidence 6789999999999 33 68999999999864 33 2699999999998888877777766655444322 122222
Q ss_pred eEEEEEEechhhHHHHHHHHH---HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHH-----HHHHhh
Q 014314 263 LVQHYIKLSELEKNRKLNDLL---DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL-----TRYKGF 334 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~-----~~~~~f 334 (427)
..+ ++......+...+...+ ....++++||||++++.++.+++.|++.++ ..+||+|++.+|. .+++.|
T Consensus 245 i~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~F 321 (844)
T TIGR02621 245 IVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRF 321 (844)
T ss_pred eEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHH
Confidence 233 33333333332222211 123457899999999999999999998877 8999999999999 788999
Q ss_pred hc----CC-------CcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEE-EEEe
Q 014314 335 KE----GN-------KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA-ITFV 392 (427)
Q Consensus 335 ~~----~~-------~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~-~~~~ 392 (427)
++ |. ..|||||+++++|||++. ++||+...| ...|+||+||+||.|+.|.+ +.++
T Consensus 322 k~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 322 LPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 86 43 679999999999999986 888887666 58999999999999985433 4444
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-43 Score=361.95 Aligned_cols=317 Identities=20% Similarity=0.192 Sum_probs=248.6
Q ss_pred HHHHHHHhCCCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHH
Q 014314 56 ELLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (427)
Q Consensus 56 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (427)
...+.....+| .||+.|.++++.++.+ ++.+++|+||+|||.+++.+++..+.. +.+++|++||++||.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHH
Confidence 44455556678 7999999999999986 789999999999999988877766543 2389999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHHHH---hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCC
Q 014314 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206 (427)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~ 206 (427)
+++.+++..... ++++.+++|+.+...+...+ .++.++|+|+||+.+. ....+.+++++|+||+|++..
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--
Confidence 999999876655 67888888888776665443 3456799999997442 345678899999999998732
Q ss_pred CcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEech-hhHHHHHHHHHHh
Q 014314 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDA 285 (427)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~ 285 (427)
. ....++.++.+.|++++|||+.+....+....+.++..+...+...... ......... ..+...+..+.
T Consensus 737 ~----~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v---~~~~~~~~~~~~k~~il~el~-- 807 (1147)
T PRK10689 737 R----HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV---KTFVREYDSLVVREAILREIL-- 807 (1147)
T ss_pred h----HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCc---eEEEEecCcHHHHHHHHHHHh--
Confidence 2 2344566677899999999998877777767777777766544433222 222222221 12222233332
Q ss_pred cCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEc
Q 014314 286 LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~ 363 (427)
.+++++|||++++.++.+++.|++. +.++..+||+|++.+|..++..|++|+++|||||+++++|+|+|++++||..
T Consensus 808 -r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 808 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 4589999999999999999999987 7899999999999999999999999999999999999999999999999965
Q ss_pred CCC-CCchhhhhcccccCCCCCccEEEEEecC
Q 014314 364 DMP-DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 364 ~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
+.. .+..+|.||+||+||.|+.|.|++++..
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 443 3667899999999999999999998854
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=9e-43 Score=344.92 Aligned_cols=320 Identities=20% Similarity=0.261 Sum_probs=237.7
Q ss_pred HHHHHHHHh-CCCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHH
Q 014314 55 PELLRAIVD-SGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 127 (427)
Q Consensus 55 ~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 127 (427)
..+.+.+.+ .+| .||++|+++++.+..+ .+.+++|+||||||++|++|++..+..+ .+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---YQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEeccHHHH
Confidence 344444544 467 6999999999999986 4799999999999999999999877543 3899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 128 YQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 128 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
.|+++.+++++... ++++..++|+.+.... ...+.++.++|+|+||+.+.. ...+.+++++|+||+|++..
T Consensus 324 ~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 324 EQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred HHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH
Confidence 99999999998775 7899999999876443 334556678999999987742 34578899999999998632
Q ss_pred CCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHH
Q 014314 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD 284 (427)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (427)
..+. .+......+++++||||+.+....+......+...+...+... ..+..... ....+...+..+.+
T Consensus 398 --~qr~----~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r---~~i~~~~~--~~~~~~~~~~~i~~ 466 (681)
T PRK10917 398 --EQRL----ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGR---KPITTVVI--PDSRRDEVYERIRE 466 (681)
T ss_pred --HHHH----HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCC---CCcEEEEe--CcccHHHHHHHHHH
Confidence 2222 2333344688999999987654433221111222222111111 11222222 12222222222222
Q ss_pred h-cCCCeEEEEECCch--------hHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCC
Q 014314 285 A-LDFNQVVIFVKSVS--------RAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (427)
Q Consensus 285 ~-~~~~~~ivf~~~~~--------~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 353 (427)
. ..+++++|||+.++ .+..+++.|... ++++..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 467 ~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiD 546 (681)
T PRK10917 467 EIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVD 546 (681)
T ss_pred HHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcc
Confidence 2 24579999999653 456677777765 578999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-CchhhhhcccccCCCCCccEEEEEecCC
Q 014314 354 IERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 354 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
+|++++||+++.|. +.+++.|+.||+||.|..|.|++++...
T Consensus 547 ip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 547 VPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred cCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 99999999999987 5788999999999999999999999533
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.3e-43 Score=343.14 Aligned_cols=317 Identities=20% Similarity=0.241 Sum_probs=235.4
Q ss_pred HHHHHHhCCCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 57 LLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 57 l~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
+.+.+...+| +||+.|+++++.++.+ .+.+++|+||||||++|+++++..+..+ .+++|++||++||.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g---~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG---YQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEECCHHHHHHHH
Confidence 4455566688 7999999999999985 2589999999999999999999887643 3899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHH---HHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCC
Q 014314 131 CHEFERFSTYLPDIKVAVFYGGVNIKI---HKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207 (427)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~ 207 (427)
++.+++++... ++++..++|+..... ....+.++.++|+|+||+.+.. ...+.+++++|+||+|++.. .
T Consensus 301 ~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~ 372 (630)
T TIGR00643 301 YNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--E 372 (630)
T ss_pred HHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--H
Confidence 99999998765 789999999987654 3344556678999999987753 35678899999999998643 2
Q ss_pred cHHHHHHHHHhCC--CCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh
Q 014314 208 MRRDVQEIFKMTP--HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285 (427)
Q Consensus 208 ~~~~~~~~~~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 285 (427)
.+.. +..... ..+++++||||+.+....+......+...+...+... ..+.... .....+...+..+.+.
T Consensus 373 qr~~---l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r---~~i~~~~--~~~~~~~~~~~~i~~~ 444 (630)
T TIGR00643 373 QRKK---LREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGR---KPITTVL--IKHDEKDIVYEFIEEE 444 (630)
T ss_pred HHHH---HHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCC---CceEEEE--eCcchHHHHHHHHHHH
Confidence 2222 222222 2578999999987654332211111111111111111 1111111 1222222233333333
Q ss_pred c-CCCeEEEEECCc--------hhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCC
Q 014314 286 L-DFNQVVIFVKSV--------SRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (427)
Q Consensus 286 ~-~~~~~ivf~~~~--------~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~ 354 (427)
. .+++++|||+.. ..+..+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 445 l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi 524 (630)
T TIGR00643 445 IAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV 524 (630)
T ss_pred HHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc
Confidence 2 457899999876 4466777777653 7889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC-CchhhhhcccccCCCCCccEEEEEec
Q 014314 355 ERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 355 ~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
|++++||+++.|. +.+++.||+||+||.|+.|.|++++.
T Consensus 525 P~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 525 PNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999886 67889999999999999999999994
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.4e-42 Score=353.75 Aligned_cols=321 Identities=21% Similarity=0.297 Sum_probs=232.2
Q ss_pred EEecCCCCcchHHHHHhhhccCCC----------CCCeEEEEEeCchHHHHHHHHHHHHHhc-----------cCCCceE
Q 014314 88 CQAKSGMGKTAVFVLSTLQQTEPN----------PGQVTALVLCHTRELAYQICHEFERFST-----------YLPDIKV 146 (427)
Q Consensus 88 i~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~~lil~P~~~L~~q~~~~~~~~~~-----------~~~~~~~ 146 (427)
|++|||||||++|.+|++..+... ..+.++|||+|+++|+.|+.+.++.... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999876432 2346899999999999999998875221 1237899
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCCcccccC-C--CcHHHHHHHHHhCCCC
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLES-L--DMRRDVQEIFKMTPHD 222 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvDEah~~~~~-~--~~~~~~~~~~~~~~~~ 222 (427)
..++|+.+...+.+.+.+. ++|+|+||++|..++.+. ...++++++|||||+|.+.+. . .+...+.++....+..
T Consensus 81 ~vrtGDt~~~eR~rll~~p-pdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNP-PDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCC-CCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCC
Confidence 9999999888776666654 699999999999877543 346899999999999999863 1 2344566676777778
Q ss_pred ceEEEEEccCCccHHHHHHHhcC-CCeEEEEcCCccccccceEEEEEEechh--------------------hHHH-HHH
Q 014314 223 KQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSEL--------------------EKNR-KLN 280 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~l~ 280 (427)
.|+|++|||+++ ...+.+.+.. .+..+......+ .. .+. .++..... .... ...
T Consensus 160 ~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r-~~-~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 160 AQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMR-HP-QIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCc-cc-ceE-EEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 999999999987 3555554433 244443222111 11 111 11111000 0001 112
Q ss_pred HHHHh-cCCCeEEEEECCchhHHHHHHHHHhCC---------------------------------CCeEEecCCCCHHH
Q 014314 281 DLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---------------------------------FPSICIHSGMSQEE 326 (427)
Q Consensus 281 ~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~l~~~~~~~~ 326 (427)
.++.. ....++||||||++.|+.++..|++.. ..+..+||++++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 23332 245789999999999999999997631 12567899999999
Q ss_pred HHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC-CCccEEEEEecCCccHHHHH---
Q 014314 327 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVSSASDSDILN--- 402 (427)
Q Consensus 327 r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~~~~~~--- 402 (427)
|..+++.|++|++++||||+.+++|||++++++||+++.|.|+.+|+||+||+||. |..+.++++.. +..++++
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~--~r~dlle~~~ 393 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR--TRRDLVDSAV 393 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC--cHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999995 34455554443 3333333
Q ss_pred HHHHHhccccccC
Q 014314 403 QVQARFEVDIKEL 415 (427)
Q Consensus 403 ~~~~~~~~~~~~l 415 (427)
.++..+..+++++
T Consensus 394 ~ve~~l~g~iE~~ 406 (1490)
T PRK09751 394 IVECMFAGRLENL 406 (1490)
T ss_pred HHHHHhcCCCCcc
Confidence 4556666666554
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-41 Score=304.48 Aligned_cols=322 Identities=21% Similarity=0.319 Sum_probs=244.8
Q ss_pred CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
.-.++.||.......+.+ +.+|+.|||.|||+++++-+...+...++ ++|+++||+-|+.|..+.|.+.... |...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGI-PEDE 88 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCC-Chhh
Confidence 347899999998887776 89999999999999998888888776665 8999999999999999999998765 4568
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceE
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (427)
++.++|..........+.++ +|+|+||+.+.+-+..+..++.++.++|+||||+-..+..+.. +.+.+-....++.+
T Consensus 89 i~~ltGev~p~~R~~~w~~~--kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~-Va~~y~~~~k~~~i 165 (542)
T COG1111 89 IAALTGEVRPEEREELWAKK--KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVF-VAKEYLRSAKNPLI 165 (542)
T ss_pred eeeecCCCChHHHHHHHhhC--CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHH-HHHHHHHhccCceE
Confidence 88999999988888777775 8999999999999999999999999999999999987444433 44444444566789
Q ss_pred EEEEccCCccHHHH---HHHhcCCCeEEEEcCCccccc--cc--------------------------------------
Q 014314 226 MMFSATLSKEIRPV---CKKFMQDPMEIYVDDEAKLTL--HG-------------------------------------- 262 (427)
Q Consensus 226 v~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~-------------------------------------- 262 (427)
+++||||..+...+ +..+....+.+..+.+..... ..
T Consensus 166 lgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~ 245 (542)
T COG1111 166 LGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVI 245 (542)
T ss_pred EEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 99999986553322 222221222221111000000 00
Q ss_pred -------------eE-------EE--------------------------------------------------------
Q 014314 263 -------------LV-------QH-------------------------------------------------------- 266 (427)
Q Consensus 263 -------------~~-------~~-------------------------------------------------------- 266 (427)
.. ..
T Consensus 246 ~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~ 325 (542)
T COG1111 246 ESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLL 325 (542)
T ss_pred eccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHh
Confidence 00 00
Q ss_pred ---------------EEEechhhHHHHHHHHH----HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeE-Ee--------
Q 014314 267 ---------------YIKLSELEKNRKLNDLL----DALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CI-------- 318 (427)
Q Consensus 267 ---------------~~~~~~~~~~~~l~~~l----~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~l-------- 318 (427)
........|...+..++ +..++.++|||++.+.+++.+.++|...+..+. .+
T Consensus 326 ~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~ 405 (542)
T COG1111 326 ADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREG 405 (542)
T ss_pred cChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccc
Confidence 00000011222222222 223457899999999999999999999887774 22
Q ss_pred cCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 319 HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 319 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
..||++.++..+++.|++|+.+|||||+++++|||+|+++.||+|++..|...++||.||+||. +.|.+++++..+
T Consensus 406 ~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 406 DKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2579999999999999999999999999999999999999999999999999999999999996 899999999765
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-41 Score=330.15 Aligned_cols=309 Identities=19% Similarity=0.236 Sum_probs=226.1
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchH---------HHHHhhhcc---CCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAV---------FVLSTLQQT---EPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~---------~~~~~~~~~---~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
..+|+++++.++.++++++.|+||||||.+ |+.+.+..+ .......++++++||++||.|+..++.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999987 333333332 21223458999999999999999998876
Q ss_pred hcc--CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHH
Q 014314 138 STY--LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (427)
Q Consensus 138 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~ 215 (427)
.+. ..+..+.+.+|+...... ..... ..+|+++|++... ..+.++++||+||||++.... ..+..+
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~-~t~~k-~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~---DllL~l 313 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELI-NTNPK-PYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG---DIIIAV 313 (675)
T ss_pred hCccccCCceEEEEECCcchHHh-hcccC-CCCEEEEeCcccc-------cccccCCEEEccccccCccch---hHHHHH
Confidence 544 346678888998763211 11112 3589999975311 257889999999999987632 333344
Q ss_pred HHhC-CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec----------hhhHHHHHHHHHH
Q 014314 216 FKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS----------ELEKNRKLNDLLD 284 (427)
Q Consensus 216 ~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~l~ 284 (427)
++.. +..+|+++||||++.+...+ ..++.++..+.+... ....+.+.+.... ...+...+..+..
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 4333 33459999999999887666 567777777776532 1123334443221 1222223333332
Q ss_pred h--cCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhh-hcCCCcEEEEeCCccccCCCCCCCE
Q 014314 285 A--LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGF-KEGNKRILVATDLVGRGIDIERVNI 359 (427)
Q Consensus 285 ~--~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f-~~~~~~vlv~T~~~~~Gld~~~~~~ 359 (427)
. ..++++|||++++.+++.+++.|.+. ++.+..+||++++. .+.++.| ++|+.+|||||+++++|+|+|++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 2 23468999999999999999999987 78999999999975 4556676 6899999999999999999999999
Q ss_pred EEEcC---CCC---------CchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 360 VINYD---MPD---------SADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 360 vi~~~---~~~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
||++| .|. |.++|.||+||+||. ++|.|+.+++....
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 788999999999999 89999999986543
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.3e-40 Score=341.35 Aligned_cols=284 Identities=24% Similarity=0.339 Sum_probs=217.2
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ .|+++|+.+++.++.|++++++||||+|||.. .+++...+... +.+++||+||++|+.|+.+.++.+.... ++
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~~--g~~alIL~PTreLa~Qi~~~l~~l~~~~-~~ 152 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAKK--GKKSYIIFPTRLLVEQVVEKLEKFGEKV-GC 152 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHHHHHhhhc-Cc
Confidence 66 89999999999999999999999999999964 44444433322 3489999999999999999999998765 67
Q ss_pred eEEEEEcCcch-----HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC----------CCcH
Q 014314 145 KVAVFYGGVNI-----KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMR 209 (427)
Q Consensus 145 ~~~~~~g~~~~-----~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~----------~~~~ 209 (427)
.+..+.|+.+. ......+.++.++|+|+||+++.+.+. .+....++++|+||||.++++ .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 77777766542 233344555668999999999998766 345567999999999999852 3563
Q ss_pred -HHHHHHHHhCCC------------------------CceEEEEEccCCcc-HHHHHHHhcCCCeEEEEcCCccccccce
Q 014314 210 -RDVQEIFKMTPH------------------------DKQVMMFSATLSKE-IRPVCKKFMQDPMEIYVDDEAKLTLHGL 263 (427)
Q Consensus 210 -~~~~~~~~~~~~------------------------~~~~v~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (427)
..+..++..++. ..|++++|||+++. ... .++..+..+.+.... ....++
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~rnI 306 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLRNI 306 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc-cccCCc
Confidence 455555555443 67999999999864 332 122333333333322 234455
Q ss_pred EEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchh---HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCc
Q 014314 264 VQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (427)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 340 (427)
.+.+.... .+...+..++.... .++||||++.+. ++.+++.|+..|+++..+||++ .+.++.|++|+++
T Consensus 307 ~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 307 VDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred eEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 66665544 56667778887664 689999999887 9999999999999999999999 2235999999999
Q ss_pred EEEE----eCCccccCCCCC-CCEEEEcCCCC
Q 014314 341 ILVA----TDLVGRGIDIER-VNIVINYDMPD 367 (427)
Q Consensus 341 vlv~----T~~~~~Gld~~~-~~~vi~~~~~~ 367 (427)
|||| |++++||||+|+ +++||||+.|.
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 689999999999 89999999885
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.9e-40 Score=327.78 Aligned_cols=302 Identities=19% Similarity=0.251 Sum_probs=229.4
Q ss_pred HHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 014314 72 VQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 151 (427)
Q Consensus 72 ~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 151 (427)
+-.+.+..+..+++++++|+||||||+++.++++..... ..+++|+.|+|++|.|+++++........+..+++...
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 344566667678899999999999999999999987632 23899999999999999998865544333556666555
Q ss_pred CcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc-cccCCCcHH-HHHHHHHhCCCCceEEEEE
Q 014314 152 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRR-DVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 152 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~-~~~~~~~~~-~~~~~~~~~~~~~~~v~~S 229 (427)
+.+. . ....+|+|+|++.|++++.. ...++++++||+||+|+ .++ .++.- .+..+...++...|+++||
T Consensus 83 ~~~~------~-s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~-~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 83 GENK------V-SRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLD-ADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred cccc------c-CCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhc-cchHHHHHHHHHHhcCCCceEEEEe
Confidence 4321 1 12258999999999998876 45789999999999996 444 45543 3345556677889999999
Q ss_pred ccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHH-----HHHHHHHHhcCCCeEEEEECCchhHHHH
Q 014314 230 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN-----RKLNDLLDALDFNQVVIFVKSVSRAAEL 304 (427)
Q Consensus 230 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~ivf~~~~~~~~~l 304 (427)
||++... +..++.++..+...... ..+...|.......+. ..+..++.. ..+++|||+++..+++.+
T Consensus 154 ATl~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 154 ATLDGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CCCCHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHH
Confidence 9998653 34556554444433221 1123334333322221 233344433 358899999999999999
Q ss_pred HHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC--------------
Q 014314 305 NKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD-------------- 367 (427)
Q Consensus 305 ~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~-------------- 367 (427)
++.|++ .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+++.++
T Consensus 226 ~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 305 (819)
T TIGR01970 226 QEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLE 305 (819)
T ss_pred HHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceee
Confidence 999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred ----CchhhhhcccccCCCCCccEEEEEecC
Q 014314 368 ----SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 368 ----s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|.+++.||.||+||. ++|.|+.+++.
T Consensus 306 ~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~ 335 (819)
T TIGR01970 306 TVRISQASATQRAGRAGRL-EPGVCYRLWSE 335 (819)
T ss_pred EEEECHHHHHhhhhhcCCC-CCCEEEEeCCH
Confidence 344689999999999 89999999974
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=300.76 Aligned_cols=341 Identities=20% Similarity=0.229 Sum_probs=268.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhh-cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe
Q 014314 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (427)
Q Consensus 43 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (427)
.+....+++++++...+-|+..|++.+.|+|..++.+-+ .|.|.++.++|+||||++.-++-+..+...++ +.|+++
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--KmlfLv 268 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLV 268 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--eEEEEe
Confidence 334457789999999999999999999999999998755 59999999999999999999988887776544 789999
Q ss_pred CchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcC
Q 014314 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 198 (427)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDE 198 (427)
|..+||+|-++.|+.-.... ++++..-.|...+..... .-....+||+|+|++-+..+++.. ..+.+++.||+||
T Consensus 269 PLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999998665554 788877777554433321 122234799999999999998877 6789999999999
Q ss_pred CcccccCCCcHHHHHH---HHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhh
Q 014314 199 CDKMLESLDMRRDVQE---IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELE 274 (427)
Q Consensus 199 ah~~~~~~~~~~~~~~---~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 274 (427)
+|.+.+ ...++.+.- -++.+.+..|+|++|||..+. ..+++.+......+... + ..+..+...+. ..+
T Consensus 347 iHtL~d-eERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~R-----P-VplErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLED-EERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDER-----P-VPLERHLVFARNESE 418 (830)
T ss_pred eeeccc-hhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCC-----C-CChhHeeeeecCchH
Confidence 998876 333333332 234445589999999999865 56666666555443222 1 12233334443 677
Q ss_pred HHHHHHHHHHhc--------CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC
Q 014314 275 KNRKLNDLLDAL--------DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (427)
Q Consensus 275 ~~~~l~~~l~~~--------~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 346 (427)
|...+..+.+.. -.+++|||++|+..|..++..|...|+++.+||++++..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 888887777543 247899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCEEE----EcCCCCCchhhhhcccccCCCC--CccEEEEEecCC
Q 014314 347 LVGRGIDIERVNIVI----NYDMPDSADTYLHRVGRAGRFG--TKGLAITFVSSA 395 (427)
Q Consensus 347 ~~~~Gld~~~~~~vi----~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 395 (427)
+++.|+|+|.-.+++ .-.-.-|+.+|.||+|||||.+ ..|.+++++.+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999755443 2223458999999999999976 468888888654
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1e-40 Score=327.59 Aligned_cols=340 Identities=23% Similarity=0.303 Sum_probs=250.8
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (427)
+.+.+.+-+...++..+.+.|+.++...+. ++|++|++|||||||+++++.++..+.+++. +++|+||+++||.+.+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~--k~vYivPlkALa~Ek~ 93 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGG--KVVYIVPLKALAEEKY 93 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCC--cEEEEeChHHHHHHHH
Confidence 567777778888888888888888877776 4999999999999999999999999887633 8999999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHH
Q 014314 132 HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 211 (427)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~ 211 (427)
++++++... |++|...+|+...... .+.. ++|+|+||+++..+.++....+..+++||+||+|.+.+ ...++.
T Consensus 94 ~~~~~~~~~--GirV~~~TgD~~~~~~--~l~~--~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d-~~RG~~ 166 (766)
T COG1204 94 EEFSRLEEL--GIRVGISTGDYDLDDE--RLAR--YDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD-RTRGPV 166 (766)
T ss_pred HHhhhHHhc--CCEEEEecCCcccchh--hhcc--CCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC-cccCce
Confidence 999955444 8999999998764431 2222 59999999999999998887888999999999998877 334444
Q ss_pred HHHHHHhC---CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh-------hHHHHHHH
Q 014314 212 VQEIFKMT---PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-------EKNRKLND 281 (427)
Q Consensus 212 ~~~~~~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 281 (427)
+..+.... ....|++++|||+|+. ..++.++..++......+............+...... .....+..
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 44444333 3347999999999965 5666666555442111111111111112222222211 22334444
Q ss_pred HHHhc-CCCeEEEEECCchhHHHHHHHHHhC-------------------------------------CCCeEEecCCCC
Q 014314 282 LLDAL-DFNQVVIFVKSVSRAAELNKLLVEC-------------------------------------NFPSICIHSGMS 323 (427)
Q Consensus 282 ~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~l~~~~~ 323 (427)
++... .++++||||++++.+...++.|+.. ...+..+|++++
T Consensus 246 v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 246 VLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 44444 4579999999999999999988830 023567899999
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE----EcC-----CCCCchhhhhcccccCCCC--CccEEEEEe
Q 014314 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----NYD-----MPDSADTYLHRVGRAGRFG--TKGLAITFV 392 (427)
Q Consensus 324 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~ 392 (427)
..+|..+.+.|+.|+++||+||++++.|+|+|.-+.|| .|+ .+-++.+++||+|||||.| ..|.++++.
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999999999999999999999999999766666 355 3447889999999999987 456677777
Q ss_pred cCCccHHHHH
Q 014314 393 SSASDSDILN 402 (427)
Q Consensus 393 ~~~~~~~~~~ 402 (427)
...++..+..
T Consensus 406 ~~~~~~~~~~ 415 (766)
T COG1204 406 TSHDELEYLA 415 (766)
T ss_pred cCccchhHHH
Confidence 4444444333
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.1e-40 Score=327.52 Aligned_cols=303 Identities=19% Similarity=0.262 Sum_probs=230.8
Q ss_pred HHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 014314 72 VQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 151 (427)
Q Consensus 72 ~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 151 (427)
+-.+.+.++..++++++.|+||||||+++.+++++..... .+++|++|||++|.|+++.+........+..+++..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~---~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN---GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC---CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 3455666777788999999999999999999999765332 2899999999999999999865544433667777766
Q ss_pred CcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcH-HHHHHHHHhCCCCceEEEEEc
Q 014314 152 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 152 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~-~~~~~~~~~~~~~~~~v~~SA 230 (427)
+.+... ...+|+|+|++.+++++.. ...++++++||+||+|+..-..++. ..+..+.+.+++..|+++|||
T Consensus 86 ~~~~~~-------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 86 AESKVG-------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred CccccC-------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 543221 1248999999999998875 4578999999999999743223332 234455666778899999999
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHH-----HHHHHHHhcCCCeEEEEECCchhHHHHH
Q 014314 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-----KLNDLLDALDFNQVVIFVKSVSRAAELN 305 (427)
Q Consensus 231 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~ivf~~~~~~~~~l~ 305 (427)
|++.. .+..++.++..+...... ..+..+|.......+.. .+..++.. ..+.+|||+++..+++.++
T Consensus 158 Tl~~~---~l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 158 TLDND---RLQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred CCCHH---HHHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 99864 234555555444443221 12334444333333322 23344433 3589999999999999999
Q ss_pred HHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC---------------
Q 014314 306 KLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD--------------- 367 (427)
Q Consensus 306 ~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~--------------- 367 (427)
+.|++ .++.+..+||++++.+|..++..|++|+.+|||||+++++|||+|++++||+++.++
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 99987 578899999999999999999999999999999999999999999999999988764
Q ss_pred ---CchhhhhcccccCCCCCccEEEEEecC
Q 014314 368 ---SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 368 ---s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|.+++.||.||+||. .+|.|+.+++.
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~ 338 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSK 338 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCH
Confidence 345799999999998 69999999974
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5e-39 Score=336.15 Aligned_cols=321 Identities=19% Similarity=0.238 Sum_probs=245.6
Q ss_pred HHHHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 56 ELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 56 ~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
+..+.+++ .|| .|+++|+.+++.++.|+++++.||||+|||++++++++..... +.+++|++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~---g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK---GKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc---CCeEEEEECHHHHHHHHHHHH
Confidence 44555665 699 6999999999999999999999999999999766665544322 238999999999999999999
Q ss_pred HHHhccCC-CceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-----
Q 014314 135 ERFSTYLP-DIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----- 205 (427)
Q Consensus 135 ~~~~~~~~-~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~----- 205 (427)
+.++.... ++.+..++|+.+...+. ..+.++.++|+|+||+.+...+... ...+++++|+||||+++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccc
Confidence 99876541 46778888988776553 3455666899999999888765432 1267899999999999753
Q ss_pred -----CCcHHHHHH----HHH----------------------hCCCCce-EEEEEccCCccHHHHHHHhcCCCeEEEEc
Q 014314 206 -----LDMRRDVQE----IFK----------------------MTPHDKQ-VMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (427)
Q Consensus 206 -----~~~~~~~~~----~~~----------------------~~~~~~~-~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (427)
.+|.+.+.. ++. .+++..| ++++|||+++... ...++..+..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEec
Confidence 367766653 321 2234455 5779999986411 12334556555554
Q ss_pred CCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchh---HHHHHHHHHhCCCCeEEecCCCCHHHHHHH
Q 014314 254 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTR 330 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~ 330 (427)
... ....++.+.+.......+ ..+..+++.. +.++||||++++. |+.+++.|...|+++..+||+ |...
T Consensus 299 ~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHH
Confidence 432 344556666665554444 4677777776 4789999999875 589999999999999999994 8889
Q ss_pred HHhhhcCCCcEEEEe----CCccccCCCCC-CCEEEEcCCCC---Cchhhhhcc-------------cccCCCCCccEEE
Q 014314 331 YKGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMPD---SADTYLHRV-------------GRAGRFGTKGLAI 389 (427)
Q Consensus 331 ~~~f~~~~~~vlv~T----~~~~~Gld~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~g~~~ 389 (427)
++.|++|+++||||| ++++||||+|+ +++|||+|.|+ +...|.|.. ||+||.|....++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 999999999999999 58999999999 99999999999 887777765 9999999887776
Q ss_pred EEe
Q 014314 390 TFV 392 (427)
Q Consensus 390 ~~~ 392 (427)
..+
T Consensus 451 ~~~ 453 (1638)
T PRK14701 451 LDV 453 (1638)
T ss_pred HHh
Confidence 433
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-39 Score=307.77 Aligned_cols=316 Identities=20% Similarity=0.200 Sum_probs=240.2
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|..+++.++.|+ +..+.||+|||+++.+|++.....+. .++|++||++||.|.++++..+...+ ++
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~---~v~VvTptreLA~qdae~~~~l~~~l-Gl 173 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGL---PVHVITVNDYLAERDAELMRPLYEAL-GL 173 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCC---eEEEEcCcHHHHHHHHHHHHHHHhhc-CC
Confidence 44 78999999999999998 99999999999999999998866543 89999999999999999999998887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC-------------------------CCCCCccEEEEcC
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD-------------------------LSLKNVRHFILDE 198 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~~-------------------------~~~~~~~~iVvDE 198 (427)
++.+++|+.+..... ...+ ++|+|+|...| +++++.+. .-...+.+.||||
T Consensus 174 sv~~i~gg~~~~~r~--~~y~-~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 174 TVGCVVEDQSPDERR--AAYG-ADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred EEEEEeCCCCHHHHH--HHcC-CCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 999999997654333 2233 59999999877 44444321 1135688999999
Q ss_pred CcccccC--------------C---CcHHHHHHHHHhCCC----------------------------------------
Q 014314 199 CDKMLES--------------L---DMRRDVQEIFKMTPH---------------------------------------- 221 (427)
Q Consensus 199 ah~~~~~--------------~---~~~~~~~~~~~~~~~---------------------------------------- 221 (427)
+|.++-+ . .+......+...+..
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 9987610 0 000001111100000
Q ss_pred ----------------C-------------------------------------------------------------ce
Q 014314 222 ----------------D-------------------------------------------------------------KQ 224 (427)
Q Consensus 222 ----------------~-------------------------------------------------------------~~ 224 (427)
+ .+
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 0 06
Q ss_pred EEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHH
Q 014314 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAA 302 (427)
Q Consensus 225 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~ 302 (427)
+.+||||.+.....+...+..++..+...... .....+.++......|...+...+... .+.++||||++++.++
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 77889998877777777776665444332221 222233345566777888888888764 2578999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCC---CCC-----EEEEcCCCCCchhhhh
Q 014314 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLH 374 (427)
Q Consensus 303 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~---~~~-----~vi~~~~~~s~~~~~Q 374 (427)
.+++.|.+.|+++..+||+++ +|...+..|..+...|+|||++++||+|++ ++. +||+++.|.|...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 999999999999999999865 444555566666667999999999999999 666 9999999999999999
Q ss_pred cccccCCCCCccEEEEEecCC
Q 014314 375 RVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 375 ~~GR~~R~g~~g~~~~~~~~~ 395 (427)
|+||+||.|++|.++.|++..
T Consensus 566 r~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred hcccccCCCCCeEEEEEechh
Confidence 999999999999999999853
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.8e-39 Score=311.92 Aligned_cols=306 Identities=18% Similarity=0.192 Sum_probs=217.4
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
..|+++|.++++.++.++++++++|||+|||.++...+...+... ..++||++||++|+.||.+.++++... +...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLF-PREAM 189 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhccc-cccce
Confidence 489999999999999999999999999999987654322222222 238999999999999999999987644 23444
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEE
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (427)
..+.+|.... ...+|+|+|++++.+... ..+.++++||+||||++.. ..+..++..+++.++++
T Consensus 190 ~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~-----~~~~~il~~~~~~~~~l 253 (501)
T PHA02558 190 HKIYSGTAKD--------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG-----KSLTSIITKLDNCKFKF 253 (501)
T ss_pred eEEecCcccC--------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc-----hhHHHHHHhhhccceEE
Confidence 4455554321 125899999999876432 2467899999999998865 23456666666678899
Q ss_pred EEEccCCccHHHH--HHHhcCCCeEEEEcCC-----ccccccceEE----------------EE-----EEechhhHHHH
Q 014314 227 MFSATLSKEIRPV--CKKFMQDPMEIYVDDE-----AKLTLHGLVQ----------------HY-----IKLSELEKNRK 278 (427)
Q Consensus 227 ~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------~~-----~~~~~~~~~~~ 278 (427)
++|||++...... ...++++ ....+... .......... .+ .......+...
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 9999997542211 1111221 11111000 0000000000 00 00111223333
Q ss_pred HHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEe-CCccccCCCC
Q 014314 279 LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIE 355 (427)
Q Consensus 279 l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gld~~ 355 (427)
+..+.... .+.+++|||.+.++++.+++.|+..|.++..+||+++..+|..+++.|++|+..||||| +++++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 44443322 35789999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEe
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 392 (427)
++++||++.++.|...|+||+||++|.+..+....++
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999999987554433333
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.1e-39 Score=301.82 Aligned_cols=298 Identities=20% Similarity=0.261 Sum_probs=204.3
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH--------
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK-------- 156 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~-------- 156 (427)
+++|.+|||||||++++++++..+.... ..+++|++|+++|+.|+.+.+..++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-ADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-CCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCc
Confidence 4789999999999999999998765433 338999999999999999999987532 344444433211
Q ss_pred ----HHHHHH-hc----CCCcEEEechHHHHHHHhcCC----CCC--CCccEEEEcCCcccccCCCcHHHHHHHHHhC-C
Q 014314 157 ----IHKDLL-KN----ECPQIVVGTPGRILALARDKD----LSL--KNVRHFILDECDKMLESLDMRRDVQEIFKMT-P 220 (427)
Q Consensus 157 ----~~~~~~-~~----~~~~I~v~T~~~l~~~~~~~~----~~~--~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~ 220 (427)
...... .+ ...+|+++||++++..+.... ..+ -..++||+||+|.+.+. .+.. +..++..+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~-l~~~l~~l~~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLAL-ILAVLEVLKD 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHHH-HHHHHHHHHH
Confidence 000000 10 124799999999988665421 111 12378999999998762 2222 44443333 3
Q ss_pred CCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEE--EechhhHHHHHHHHHHhc-CCCeEEEEECC
Q 014314 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI--KLSELEKNRKLNDLLDAL-DFNQVVIFVKS 297 (427)
Q Consensus 221 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~ 297 (427)
.+.|++++|||+|..+..+.......+.......... . ....+.+. ......+...+..+++.. .++++||||++
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t 231 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-R-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNT 231 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-c-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECC
Confidence 4689999999999776666655433221111110000 0 00011111 111223445555555543 46899999999
Q ss_pred chhHHHHHHHHHhCCC--CeEEecCCCCHHHHHH----HHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchh
Q 014314 298 VSRAAELNKLLVECNF--PSICIHSGMSQEERLT----RYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371 (427)
Q Consensus 298 ~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~----~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~ 371 (427)
++.++.+++.|++.+. .+..+||++++.+|.. +++.|++|+.++||||+++++|+|++ ++.||++..| ..+
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~ 308 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDS 308 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHH
Confidence 9999999999988765 4899999999999976 48899999999999999999999995 8888887765 689
Q ss_pred hhhcccccCCCCCc----cEEEEEecC
Q 014314 372 YLHRVGRAGRFGTK----GLAITFVSS 394 (427)
Q Consensus 372 ~~Q~~GR~~R~g~~----g~~~~~~~~ 394 (427)
|+||+||+||.|+. |.+++|...
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeec
Confidence 99999999998754 366666654
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.9e-38 Score=323.54 Aligned_cols=292 Identities=17% Similarity=0.282 Sum_probs=214.7
Q ss_pred HHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 57 l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
..+.+.+.....|+++|+.+++.++.|++++++||||+|||+ |.+++...+... +++++|++||++|+.|+.+.++.
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHHH
Confidence 344455444457999999999999999999999999999997 555555544322 34899999999999999999999
Q ss_pred HhccCCCceE---EEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-----
Q 014314 137 FSTYLPDIKV---AVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----- 205 (427)
Q Consensus 137 ~~~~~~~~~~---~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~----- 205 (427)
+.... ++.+ ..++|+.+...+. ..+.++.++|+|+||+.+...+.... . .++++|+||||.++++
T Consensus 144 l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 144 LAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHH
Confidence 98764 4443 3577887765543 34455668999999999988665421 1 7899999999999863
Q ss_pred -----CCcHHH-HHHH----------------------HHhCCCCce--EEEEEcc-CCccHHHHHHHhcCCCeEEEEcC
Q 014314 206 -----LDMRRD-VQEI----------------------FKMTPHDKQ--VMMFSAT-LSKEIRPVCKKFMQDPMEIYVDD 254 (427)
Q Consensus 206 -----~~~~~~-~~~~----------------------~~~~~~~~~--~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~~ 254 (427)
.+|... +..+ +...+..+| ++++||| .|..... .++.+...+.+..
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC
Confidence 355542 3332 223344444 5678999 5655432 2334444444433
Q ss_pred CccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCc---hhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 014314 255 EAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV---SRAAELNKLLVECNFPSICIHSGMSQEERLTRY 331 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~---~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~ 331 (427)
.. ....++.+.+..... +...+..+++.. +.++||||++. +.|+.+++.|++.|+++..+||++++ ..+
T Consensus 297 ~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l 368 (1171)
T TIGR01054 297 GS-DTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDY 368 (1171)
T ss_pred cc-ccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHH
Confidence 32 234455566554332 234566777765 46899999999 99999999999999999999999973 678
Q ss_pred HhhhcCCCcEEEEe----CCccccCCCCC-CCEEEEcCCC
Q 014314 332 KGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMP 366 (427)
Q Consensus 332 ~~f~~~~~~vlv~T----~~~~~Gld~~~-~~~vi~~~~~ 366 (427)
+.|++|+++||||| ++++||||+|+ +++||+||.|
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999999994 89999999999 8999998876
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=313.91 Aligned_cols=352 Identities=24% Similarity=0.331 Sum_probs=271.4
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (427)
....+..++.+.|+.+|+.+|.+|+..+.+|++++|..+||||||.+|++|++..+...+.. ++|+|.||++|++.+.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 34456888999999999999999999999999999999999999999999999999887765 89999999999999999
Q ss_pred HHHHHhccCC-CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHH-hcC---CCCCCCccEEEEcCCcccccCCC
Q 014314 133 EFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDK---DLSLKNVRHFILDECDKMLESLD 207 (427)
Q Consensus 133 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~-~~~---~~~~~~~~~iVvDEah~~~~~~~ 207 (427)
.++++....+ ++++..++|+.........+.+. ++|+++||++|..++ +.+ .+.++++++||+||+|.+-...+
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~p-p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~G 212 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNP-PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQG 212 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCC-CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccch
Confidence 9999998886 58888999988877666555555 799999999998844 332 34467899999999998865211
Q ss_pred -----cHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec---------hh
Q 014314 208 -----MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS---------EL 273 (427)
Q Consensus 208 -----~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 273 (427)
..+++..+++..+...|+|++|||+.+. ......+........+......... .......+ ..
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~--~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGL--RYFVRREPPIRELAESIRR 289 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCc--eEEEEeCCcchhhhhhccc
Confidence 2234445555566689999999999866 4566666665555533333222211 11111111 11
Q ss_pred hHHHHHHHHHHhc--CCCeEEEEECCchhHHHHH----HHHHhCC----CCeEEecCCCCHHHHHHHHHhhhcCCCcEEE
Q 014314 274 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELN----KLLVECN----FPSICIHSGMSQEERLTRYKGFKEGNKRILV 343 (427)
Q Consensus 274 ~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~----~~L~~~~----~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv 343 (427)
.+...+..+.... .+-++|+|+.+++.++.+. +.+...+ ..+..+++++...+|..+...|++|+..+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 2333344444333 5579999999999999997 4444445 5678899999999999999999999999999
Q ss_pred EeCCccccCCCCCCCEEEEcCCCC-CchhhhhcccccCCCCCccEEEEEecCC-ccHHHHHHHHHHhc
Q 014314 344 ATDLVGRGIDIERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 409 (427)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 409 (427)
+|+++..|+|+.+++.||..+.|. +..++.|+.||+||.++.+..++....+ -+..|...-+..++
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 9999999999999999777777666533 34444444444444
No 67
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-38 Score=312.31 Aligned_cols=337 Identities=20% Similarity=0.219 Sum_probs=256.3
Q ss_pred HHHHHHH-hCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 56 ELLRAIV-DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 56 ~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
++...+. ..|...+++-|.++|..++.|++++|.+|||.||++||.+|++-.-. .+|||.|..+|...+...+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhh
Confidence 3444444 45999999999999999999999999999999999999999887654 7899999999977665444
Q ss_pred HHHhccCCCceEEEEEcCcchHHH---HHHHhcC--CCcEEEechHHHHHH--HhcCCCCCCC---ccEEEEcCCccccc
Q 014314 135 ERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNE--CPQIVVGTPGRILAL--ARDKDLSLKN---VRHFILDECDKMLE 204 (427)
Q Consensus 135 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~--~~~I~v~T~~~l~~~--~~~~~~~~~~---~~~iVvDEah~~~~ 204 (427)
.+ .++....+.++.....+ ...+.++ ..+|++.||+++... +......+.. +.++|+||||+.+.
T Consensus 325 ---~~--~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq 399 (941)
T KOG0351|consen 325 ---SK--KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ 399 (941)
T ss_pred ---hh--cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh
Confidence 22 27888888888776533 3334444 578999999998652 2222223333 78899999999998
Q ss_pred C-CCcHHHHHHHHH--hCCCCceEEEEEccCCccHHHHHHHhcCCCeE-EEEcCCccccccceEEEEEEech-hhH-HHH
Q 014314 205 S-LDMRRDVQEIFK--MTPHDKQVMMFSATLSKEIRPVCKKFMQDPME-IYVDDEAKLTLHGLVQHYIKLSE-LEK-NRK 278 (427)
Q Consensus 205 ~-~~~~~~~~~~~~--~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 278 (427)
| ++|++.+.++-. .......++++|||....++..+-..+.-... +....... .++... +.... ... ...
T Consensus 400 WgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR---~NL~ye-V~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 400 WGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNR---PNLKYE-VSPKTDKDALLDI 475 (941)
T ss_pred hcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCC---CCceEE-EEeccCccchHHH
Confidence 7 788888776632 22234679999999988887766555442222 22111111 222111 11111 122 223
Q ss_pred HHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCC
Q 014314 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358 (427)
Q Consensus 279 l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~ 358 (427)
+...-...+....||||.++.+|+.++..|+..|+.+..||++|+..+|..+...|..++++|+|||=++++|+|.|+|+
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred HHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCcee
Confidence 33333445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHH
Q 014314 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 359 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 407 (427)
.||||..|+|.+.|.|-+|||||.|....|++|++..+.......+.+.
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999977555544444443
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.2e-38 Score=304.32 Aligned_cols=316 Identities=21% Similarity=0.251 Sum_probs=232.6
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ .|+++|..+...+..|+ +..+.||+|||+++++|++.....+. .++|++||+.||.|.++++..+.... ++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 55 89999999999888776 99999999999999999986655443 79999999999999999999999887 99
Q ss_pred eEEEEEcCcc-hHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCCcccccC-----------
Q 014314 145 KVAVFYGGVN-IKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES----------- 205 (427)
Q Consensus 145 ~~~~~~g~~~-~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~~------~~~~~~~~iVvDEah~~~~~----------- 205 (427)
+++++.|+.+ .......+ . ++|+++||+.+ +++++.+. ..++.+.++|+||||.++-+
T Consensus 149 ~v~~i~g~~~~~~~r~~~y--~-~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIY--E-ADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred eEEEEeCCCCcHHHHHHhc--C-CCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 9999999988 33333222 2 69999999988 44444332 34678999999999998611
Q ss_pred ----CCcHHHHHHHHHhCCCC--------c--------------------------------------------------
Q 014314 206 ----LDMRRDVQEIFKMTPHD--------K-------------------------------------------------- 223 (427)
Q Consensus 206 ----~~~~~~~~~~~~~~~~~--------~-------------------------------------------------- 223 (427)
.........+...+... .
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 01111111222211110 0
Q ss_pred -----------------------------------------------------------eEEEEEccCCccHHHHHHHhc
Q 014314 224 -----------------------------------------------------------QVMMFSATLSKEIRPVCKKFM 244 (427)
Q Consensus 224 -----------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~ 244 (427)
++.+||+|....-..+...+.
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 344555554333222322221
Q ss_pred CCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCC
Q 014314 245 QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (427)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~ 322 (427)
. ..+.++. .+..........+......|...+...+... .+.++||||++++.++.+++.|.+.|+++..+||++
T Consensus 386 l--~v~~IPt-~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~ 462 (790)
T PRK09200 386 M--EVVQIPT-NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKN 462 (790)
T ss_pred C--cEEECCC-CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 1 1112221 1111111112233345567888787777653 578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCcEEEEeCCccccCCC---CCCC-----EEEEcCCCCCchhhhhcccccCCCCCccEEEEEecC
Q 014314 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDI---ERVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 323 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
.+.++..+...+..| .|+|||++++||+|+ |++. +||+++.|.|...|.||+||+||.|++|.++.|++.
T Consensus 463 ~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 463 AAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred cHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 988888777777665 699999999999999 6898 999999999999999999999999999999999985
Q ss_pred C
Q 014314 395 A 395 (427)
Q Consensus 395 ~ 395 (427)
.
T Consensus 541 e 541 (790)
T PRK09200 541 E 541 (790)
T ss_pred h
Confidence 3
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-37 Score=313.55 Aligned_cols=323 Identities=22% Similarity=0.332 Sum_probs=237.2
Q ss_pred CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
...++++|..++..++.+ ++++++|||+|||+++++++...+... + .++||++|+++|+.|+.+.++.+.... +.+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~-~-~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKK-G-GKVLILAPTKPLVEQHAEFFRKFLNIP-EEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhC-C-CeEEEEeCcHHHHHHHHHHHHHHhCCC-Cce
Confidence 347899999999988877 899999999999999988887766322 2 389999999999999999999886442 457
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceE
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (427)
+..++|+.........+.. .+|+|+||+.+.+.+......+.++++||+||||++.....+. .+...+....+..++
T Consensus 89 v~~~~g~~~~~~r~~~~~~--~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~-~i~~~~~~~~~~~~i 165 (773)
T PRK13766 89 IVVFTGEVSPEKRAELWEK--AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYV-YIAERYHEDAKNPLV 165 (773)
T ss_pred EEEEeCCCCHHHHHHHHhC--CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHH-HHHHHHHhcCCCCEE
Confidence 8888888776554444433 4899999999988777777788899999999999987643333 334444444556779
Q ss_pred EEEEccCCccHHH---HHHHhcCCCeEEE--------------------EcCCcc------------------------c
Q 014314 226 MMFSATLSKEIRP---VCKKFMQDPMEIY--------------------VDDEAK------------------------L 258 (427)
Q Consensus 226 v~~SAT~~~~~~~---~~~~~~~~~~~~~--------------------~~~~~~------------------------~ 258 (427)
+++|||+...... .+..+......+. +..... .
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999998533211 1111111000000 000000 0
Q ss_pred -ccc-----------------ceEE--E----------------------------------------E-----------
Q 014314 259 -TLH-----------------GLVQ--H----------------------------------------Y----------- 267 (427)
Q Consensus 259 -~~~-----------------~~~~--~----------------------------------------~----------- 267 (427)
... .+.. + .
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 000 0000 0 0
Q ss_pred ---------------EEechhhHHHHHHHHHHh----cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCC-------
Q 014314 268 ---------------IKLSELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG------- 321 (427)
Q Consensus 268 ---------------~~~~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~------- 321 (427)
.......|...+.+++.. ..++++||||+++..+..+++.|...|+.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 000112244444555543 466899999999999999999999999999999886
Q ss_pred -CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCc
Q 014314 322 -MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 322 -~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
+++.+|..+++.|++|+.++||+|+++++|+|+|++++||+|++|++...|+||+||+||.|. |.+++++..+.
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999865 77777776543
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.1e-37 Score=297.76 Aligned_cols=317 Identities=18% Similarity=0.178 Sum_probs=224.5
Q ss_pred CchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEE
Q 014314 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 148 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 148 (427)
++|+|.+++..+..++..++.++||+|||++|++|++.....+. .++|++|++.||.|+++++..+...+ |+++.+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~---~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~ 144 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK---GAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSL 144 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC---ceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEE
Confidence 35555555555555555899999999999999999877665443 68999999999999999999998887 899988
Q ss_pred EEcCcc---hHHHHHHHhcCCCcEEEechHHH-HHHHhc------CCCCCCCccEEEEcCCcccccC-------------
Q 014314 149 FYGGVN---IKIHKDLLKNECPQIVVGTPGRI-LALARD------KDLSLKNVRHFILDECDKMLES------------- 205 (427)
Q Consensus 149 ~~g~~~---~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~------~~~~~~~~~~iVvDEah~~~~~------------- 205 (427)
..++.. ..........+ ++|+++||+.| +.+++. ....++.+.++|+||||.++-+
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~-~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~ 223 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYN-SDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPR 223 (762)
T ss_pred EECCCCccccCHHHHHHhCC-CCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCc
Confidence 776522 22222232233 69999999999 455532 2344678999999999998621
Q ss_pred --CCcHHHHHHHHHhCCCC--------c----------------------------------------------------
Q 014314 206 --LDMRRDVQEIFKMTPHD--------K---------------------------------------------------- 223 (427)
Q Consensus 206 --~~~~~~~~~~~~~~~~~--------~---------------------------------------------------- 223 (427)
.........+.+.+... .
T Consensus 224 ~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 224 VQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred cchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 00111111111111110 0
Q ss_pred ---------------------------------------------------------eEEEEEccCCccHHHHHHHhcCC
Q 014314 224 ---------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQD 246 (427)
Q Consensus 224 ---------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~~ 246 (427)
++.+||+|.......+...+.
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~-- 381 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYS-- 381 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhC--
Confidence 455566665443333333221
Q ss_pred CeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCH
Q 014314 247 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324 (427)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~ 324 (427)
...+.++.. +..........+......|...+...+.. ..+.++||||++++.++.+++.|.+.|+++..+||++.+
T Consensus 382 l~v~~IPt~-kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~ 460 (762)
T TIGR03714 382 LSVVKIPTN-KPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAA 460 (762)
T ss_pred CCEEEcCCC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChH
Confidence 111222222 11111112223445566788877777755 456899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEeCCccccCCCC---------CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIE---------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 325 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
.++..+...++.| .|+|||++++||+|++ ++.+|+++++|....+ .||.||+||.|++|.++.|++..
T Consensus 461 ~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 461 KEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred HHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 8888777777666 6999999999999999 8999999999987766 99999999999999999999864
Q ss_pred c
Q 014314 396 S 396 (427)
Q Consensus 396 ~ 396 (427)
+
T Consensus 538 D 538 (762)
T TIGR03714 538 D 538 (762)
T ss_pred h
Confidence 3
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-38 Score=276.42 Aligned_cols=331 Identities=16% Similarity=0.241 Sum_probs=243.9
Q ss_pred HHHHHHHhC-CCC-CCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHH
Q 014314 56 ELLRAIVDS-GFE-HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (427)
Q Consensus 56 ~l~~~l~~~-~~~-~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (427)
.+.++|++. |+. .-++.|++|+..+.. .+|+.+++|||+||++||.+|.+..-. -.||+.|..+|+..+.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g------ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG------ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC------eEEEehHHHHHHHHHHH
Confidence 355667665 654 347999999999998 568999999999999999999987644 68999999999888877
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHHh-----cCCCcEEEechHHHHHHHhc----CCCCCCCccEEEEcCCcccc
Q 014314 133 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-----NECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~I~v~T~~~l~~~~~~----~~~~~~~~~~iVvDEah~~~ 203 (427)
-+.++ .+++..+.+..+..+..+.+. +....+++.||++...-... ....-..++++|+||||+.+
T Consensus 80 HL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 80 HLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh
Confidence 77665 445555555555544433332 12357999999966432211 11223457899999999999
Q ss_pred cC-CCcHHHHHHH--HHhCCCCceEEEEEccCCccHHHHHHH--hcCCCeEEEEcCCccccccceEEEEEEec----hhh
Q 014314 204 ES-LDMRRDVQEI--FKMTPHDKQVMMFSATLSKEIRPVCKK--FMQDPMEIYVDDEAKLTLHGLVQHYIKLS----ELE 274 (427)
Q Consensus 204 ~~-~~~~~~~~~~--~~~~~~~~~~v~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 274 (427)
.| ++|++.+.++ ++..-....++.+|||..+.++..+-. .+.+|..+.-.+..... .++... -.+
T Consensus 155 QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N------LFYD~~~K~~I~D 228 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN------LFYDNHMKSFITD 228 (641)
T ss_pred hhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh------hhHHHHHHHHhhh
Confidence 87 7888887665 333334677999999999887665433 34556544332222111 111110 011
Q ss_pred HHHHHHHHHHhc-------------CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcE
Q 014314 275 KNRKLNDLLDAL-------------DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 341 (427)
Q Consensus 275 ~~~~l~~~l~~~-------------~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~v 341 (427)
-...|.++.... ..+-.||||.|+++|+.++-.|...|+++..||+++...+|..+.+.|.+++..|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 112222322211 1245799999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHH
Q 014314 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 404 (427)
Q Consensus 342 lv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 404 (427)
+++|...++|+|-|+++.|||+++|.|+.-|.|..|||||.|....|.+||+.. |...++.|
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~-D~~~i~FL 370 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQ-DKNALNFL 370 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeeccc-chHHHHHH
Confidence 999999999999999999999999999999999999999999999999999854 44444433
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7.9e-37 Score=280.99 Aligned_cols=293 Identities=17% Similarity=0.170 Sum_probs=202.1
Q ss_pred HHHHhHhhhhcCCe--EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccC---CCceE
Q 014314 72 VQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL---PDIKV 146 (427)
Q Consensus 72 ~Q~~~i~~~~~~~~--~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---~~~~~ 146 (427)
+|.++++++..+++ +++++|||||||.+++++++... .++++++|+++|+.|+.+.++++...+ .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999999764 78899999999999999988532 268999999999999999999887543 24566
Q ss_pred EEEEcCcchH--HH-----------------HHHHhcCCCcEEEechHHHHHHHhcCC--------CCCCCccEEEEcCC
Q 014314 147 AVFYGGVNIK--IH-----------------KDLLKNECPQIVVGTPGRILALARDKD--------LSLKNVRHFILDEC 199 (427)
Q Consensus 147 ~~~~g~~~~~--~~-----------------~~~~~~~~~~I~v~T~~~l~~~~~~~~--------~~~~~~~~iVvDEa 199 (427)
..++|..... .. ........+.|+++||+.|..+++... ..+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652211 00 011112346899999999987665321 12478999999999
Q ss_pred cccccCCC----cHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHh--cCCCeEEEEcC-----C------cc-----
Q 014314 200 DKMLESLD----MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF--MQDPMEIYVDD-----E------AK----- 257 (427)
Q Consensus 200 h~~~~~~~----~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-----~------~~----- 257 (427)
|.+..+.. +......+++......+++++|||+++.+...+... ++.+....... . ..
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99864211 111233333433345799999999998877776654 34333221111 0 00
Q ss_pred -ccccceEEEEEEechhhHHHHHHHHHH-------hcCCCeEEEEECCchhHHHHHHHHHhCC--CCeEEecCCCCHHHH
Q 014314 258 -LTLHGLVQHYIKLSELEKNRKLNDLLD-------ALDFNQVVIFVKSVSRAAELNKLLVECN--FPSICIHSGMSQEER 327 (427)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~ivf~~~~~~~~~l~~~L~~~~--~~~~~l~~~~~~~~r 327 (427)
.........+.. ....+...+..+++ ...++++||||++++.++.+++.|++.+ +.+..+||.+++.+|
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 000122222222 22223333322222 2356799999999999999999999864 577889999999988
Q ss_pred HHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccC
Q 014314 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380 (427)
Q Consensus 328 ~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 380 (427)
.+. ++.+|||||+++++|+|++.. +|| ++ |.+...|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 754 478899999999999999976 566 44 889999999999997
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.5e-37 Score=294.15 Aligned_cols=318 Identities=21% Similarity=0.244 Sum_probs=237.0
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|..+...+..|+ +..++||+|||+++.+|++.....+. .+.|++||+.||.|.++++..+...+ ++
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~L-GL 126 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFL-GL 126 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccC-CC
Confidence 44 78999999988887775 99999999999999999854433332 68999999999999999999999887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCCcccccCC--------C--
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL--------D-- 207 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~------~~~~~~~~~iVvDEah~~~~~~--------~-- 207 (427)
++.++.|+.+...+...+. ++|+|+||..| +.+++.+ ...++.+.++|+||+|.++-+. +
T Consensus 127 sv~~i~g~~~~~~r~~~y~---~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYA---CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred eEEEEeCCCCHHHHHHhcC---CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 9999999988765555443 59999999999 7777765 3467889999999999886210 0
Q ss_pred -----cHHHHHHHHHhCCC--------------------------------------------------------C----
Q 014314 208 -----MRRDVQEIFKMTPH--------------------------------------------------------D---- 222 (427)
Q Consensus 208 -----~~~~~~~~~~~~~~--------------------------------------------------------~---- 222 (427)
.......+.+.+.. +
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00000000000000 0
Q ss_pred ---------------------------------------------------------ceEEEEEccCCccHHHHHHHhcC
Q 014314 223 ---------------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQ 245 (427)
Q Consensus 223 ---------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~ 245 (427)
.++.+||+|.......+...+..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 05566777765544444333322
Q ss_pred CCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHH--hcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD--ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+ .+.++...+..... ....+......|...+...+. ...+.++||||++++.++.+++.|.+.|++...+|++
T Consensus 364 ~--vv~IPtnkp~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 E--VVVVPTNRPVIRKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred C--EEEeCCCCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 2 22222222212121 112233345556666655442 2367899999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC-------CCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCc
Q 014314 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIER-------VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 324 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
+.+|+..+..|+.+...|+|||++++||+|++. .-+||+++.|.|...+.|+.||+||.|.+|.+..|++..+
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 778999999999999999999999999999988 5599999999999999999999999999999999998553
Q ss_pred c
Q 014314 397 D 397 (427)
Q Consensus 397 ~ 397 (427)
+
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 3
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=296.49 Aligned_cols=332 Identities=23% Similarity=0.311 Sum_probs=242.7
Q ss_pred CCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCC-------CCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 64 SGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
.+|..++.+|..++|.++. +.+++||||||||||-.+++.++..+.+ ..+..+++||+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4778999999999999998 6789999999999999999999987653 2345699999999999999998887
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC---CCCCCccEEEEcCCcccccCCCcHHHH
Q 014314 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD---LSLKNVRHFILDECDKMLESLDMRRDV 212 (427)
Q Consensus 136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~---~~~~~~~~iVvDEah~~~~~~~~~~~~ 212 (427)
+-+... |+.|..++|+....... ... ++|+|+||++|.-.-++.. ..++.+++||+||+|.+-+ ..++.+
T Consensus 186 kkl~~~-gi~v~ELTGD~ql~~te-i~~---tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd--~RGpvl 258 (1230)
T KOG0952|consen 186 KKLAPL-GISVRELTGDTQLTKTE-IAD---TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD--DRGPVL 258 (1230)
T ss_pred hhcccc-cceEEEecCcchhhHHH-HHh---cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC--cccchH
Confidence 655554 89999999998766554 222 5999999999976555443 2357899999999998876 444444
Q ss_pred HHHH-------HhCCCCceEEEEEccCCccHHHHHHHhcCCCe--EEEEcCCccccccceEEEEEEechh---h------
Q 014314 213 QEIF-------KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTLHGLVQHYIKLSEL---E------ 274 (427)
Q Consensus 213 ~~~~-------~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~------ 274 (427)
+.+. .......+++++|||+|+. .+++..+..++. ..+.+... .+..+.+.++-.+.. .
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~y--RPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRY--RPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccc--cccceeeeEEeeecccchhhhhhHH
Confidence 4443 2334567899999999965 455555544422 22222222 222233333332222 1
Q ss_pred --HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC----C-------------------CCeEEecCCCCHHHHHH
Q 014314 275 --KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----N-------------------FPSICIHSGMSQEERLT 329 (427)
Q Consensus 275 --~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~-------------------~~~~~l~~~~~~~~r~~ 329 (427)
....+.+++ ..+++++|||.+++.....++.|.+. | ......|++|...+|.-
T Consensus 336 ~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 336 EVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 112222222 25689999999999999998888763 1 23456799999999999
Q ss_pred HHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----cCCCC------CchhhhhcccccCC--CCCccEEEEEecCCcc
Q 014314 330 RYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDMPD------SADTYLHRVGRAGR--FGTKGLAITFVSSASD 397 (427)
Q Consensus 330 ~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~~~~~------s~~~~~Q~~GR~~R--~g~~g~~~~~~~~~~~ 397 (427)
+.+.|.+|.++||+||..+++|+|+|+-.++|- ||... +..+.+|..||||| .+..|.++++.+.+.-
T Consensus 414 ~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 414 VEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred HHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 999999999999999999999999996555552 33222 45677999999999 4578999999987766
Q ss_pred HHHHHHHHHH
Q 014314 398 SDILNQVQAR 407 (427)
Q Consensus 398 ~~~~~~~~~~ 407 (427)
..|...+...
T Consensus 494 ~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 494 DHYESLLTGQ 503 (1230)
T ss_pred HHHHHHHcCC
Confidence 6666665543
No 75
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=270.41 Aligned_cols=301 Identities=27% Similarity=0.491 Sum_probs=228.5
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccC--CCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYL--PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
+.++|+-|+++|++|+..++++|-... |.++...+.||.....+.+.+.++ .+|+|+||++++..+....+.+..++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhccceeeeeeE
Confidence 679999999999999999887765443 445556778888888888888888 59999999999999999999999999
Q ss_pred EEEEcCCcccccCCCcHHHHHHHHHhCCC------CceEEEEEccCCc-cHHHHHHHhcCCCeEEEEcCCccccccceEE
Q 014314 193 HFILDECDKMLESLDMRRDVQEIFKMTPH------DKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 265 (427)
Q Consensus 193 ~iVvDEah~~~~~~~~~~~~~~~~~~~~~------~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (427)
++|+||++.++. .++...+.++...++. ..|.+++|||+.. ++..+.+..|+-|..+....+...+.. .+
T Consensus 366 FlvlDead~lL~-qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpet--vH 442 (725)
T KOG0349|consen 366 FLVLDEADLLLG-QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPET--VH 442 (725)
T ss_pred EEEecchhhhhh-cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchh--hc
Confidence 999999999987 5777777766655543 4689999999863 344455556666655544332221100 00
Q ss_pred EEEE--------------------------------echh---h-----HHHHHHHHHHhcCCCeEEEEECCchhHHHHH
Q 014314 266 HYIK--------------------------------LSEL---E-----KNRKLNDLLDALDFNQVVIFVKSVSRAAELN 305 (427)
Q Consensus 266 ~~~~--------------------------------~~~~---~-----~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~ 305 (427)
++.. .+.. . |.+.-...++.....+.||||.++..|+.+.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 0000 0000 0 0011122334456689999999999999999
Q ss_pred HHHHhCC---CCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC
Q 014314 306 KLLVECN---FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (427)
Q Consensus 306 ~~L~~~~---~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (427)
+++++.| +.++++||+..+.+|.+.++.|+.+..++||||+++++|+|+.++-.+|+...|.+...|+||+||+||+
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9999874 6899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccEEEEEecCC-------------------------------ccHHHHHHHHHHhccccccCCccc
Q 014314 383 GTKGLAITFVSSA-------------------------------SDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 383 g~~g~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
.+-|.++.++.+. ++...+..++..+++-++.+...+
T Consensus 603 ermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 603 ERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred hhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 7777777666532 244566667777777666654433
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-36 Score=291.69 Aligned_cols=309 Identities=17% Similarity=0.168 Sum_probs=213.8
Q ss_pred CCchHHHHhHhhhhc-C--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 68 HPSEVQHECIPQAIL-G--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~-~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
.|+|+|++++.++.. + +..+|++|||+|||++.+..+.. +. .++|||||+..|+.||.+++.++.... ..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~-----k~tLILvps~~Lv~QW~~ef~~~~~l~-~~ 327 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VK-----KSCLVLCTSAVSVEQWKQQFKMWSTID-DS 327 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hC-----CCEEEEeCcHHHHHHHHHHHHHhcCCC-Cc
Confidence 689999999999885 3 36899999999999987755443 32 178999999999999999999986542 45
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--------CCCCCCccEEEEcCCcccccCCCcHHHHHHHH
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--------DLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~--------~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~ 216 (427)
.+..++|+..... . +...|+|+|++++.+...+. .+.-..+++||+||+|.+.. ..+..++
T Consensus 328 ~I~~~tg~~k~~~-----~-~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-----~~fr~il 396 (732)
T TIGR00603 328 QICRFTSDAKERF-----H-GEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-----AMFRRVL 396 (732)
T ss_pred eEEEEecCccccc-----c-cCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-----HHHHHHH
Confidence 6677777543211 1 12489999999876432211 12224688999999998743 3344455
Q ss_pred HhCCCCceEEEEEccCCccHHH--HHHHhcCCCeEEEEcC-----CccccccceEE---------------------EEE
Q 014314 217 KMTPHDKQVMMFSATLSKEIRP--VCKKFMQDPMEIYVDD-----EAKLTLHGLVQ---------------------HYI 268 (427)
Q Consensus 217 ~~~~~~~~~v~~SAT~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---------------------~~~ 268 (427)
..+.. ...+++||||...... .+..++++. .+.... .+......... ...
T Consensus 397 ~~l~a-~~RLGLTATP~ReD~~~~~L~~LiGP~-vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 397 TIVQA-HCKLGLTATLVREDDKITDLNFLIGPK-LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HhcCc-CcEEEEeecCcccCCchhhhhhhcCCe-eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 55433 4479999999643211 122222221 111100 00000000000 000
Q ss_pred EechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC-CCcEEEEe
Q 014314 269 KLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILVAT 345 (427)
Q Consensus 269 ~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~vlv~T 345 (427)
......|...+..+++.+ .+.++||||.+...+..+++.|. +..+||++++.+|..+++.|++| .+++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 112234555555666654 67899999999999998888773 45689999999999999999865 78999999
Q ss_pred CCccccCCCCCCCEEEEcCCC-CCchhhhhcccccCCCCCccEE-------EEEecCCccHHHH
Q 014314 346 DLVGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLA-------ITFVSSASDSDIL 401 (427)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~~~~~~~ 401 (427)
+++.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.+++.+.....+
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 999999999999999999987 4999999999999998766554 7777765544444
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=284.79 Aligned_cols=320 Identities=21% Similarity=0.290 Sum_probs=227.6
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
..-.+|.||.+.....+ |++.+|++|||+|||.++...+..++...+.+ ++++++|++-|+.|+...+..++. +.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~-KiVF~aP~~pLv~QQ~a~~~~~~~---~~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKG-KVVFLAPTRPLVNQQIACFSIYLI---PY 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcc-eEEEeeCCchHHHHHHHHHhhccC---cc
Confidence 44589999999999999 99999999999999999999999988776664 999999999999999866666543 24
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC-CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCc
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS-LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~-~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~ 223 (427)
.+....|+.........+... .+|+|+||+.+.+-+.....+ ++.+.++||||||+-..+..+...+..++.......
T Consensus 134 ~~T~~l~~~~~~~~r~~i~~s-~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIVAS-KRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred cceeeccCccCCCchhhhhcc-cceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 555566664333222233333 499999999999977665433 699999999999999886666666666666655566
Q ss_pred eEEEEEccCCccHHHHHHH---hcCCCeEEE-------------------------------------------------
Q 014314 224 QVMMFSATLSKEIRPVCKK---FMQDPMEIY------------------------------------------------- 251 (427)
Q Consensus 224 ~~v~~SAT~~~~~~~~~~~---~~~~~~~~~------------------------------------------------- 251 (427)
|++++|||+.+........ +... ..+.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 9999999987553321110 0000 0000
Q ss_pred ----EcC---------Cccccccce--EEE-------------------EEE--------------e-------------
Q 014314 252 ----VDD---------EAKLTLHGL--VQH-------------------YIK--------------L------------- 270 (427)
Q Consensus 252 ----~~~---------~~~~~~~~~--~~~-------------------~~~--------------~------------- 270 (427)
... .......+. .++ -+. .
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 000 000000000 000 000 0
Q ss_pred --------------------chhhHHHHHHHHHH----hcCCCeEEEEECCchhHHHHHHHHHh---CCCCeEEe-----
Q 014314 271 --------------------SELEKNRKLNDLLD----ALDFNQVVIFVKSVSRAAELNKLLVE---CNFPSICI----- 318 (427)
Q Consensus 271 --------------------~~~~~~~~l~~~l~----~~~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~l----- 318 (427)
....|...+.+++. ..+..++||||.+++.|..+.+.|.. .|++...+
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 00112222222221 12456899999999999999999873 23343333
Q ss_pred ---cCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEec
Q 014314 319 ---HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 319 ---~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
..+|++.++.++++.|++|+++|||||+++++|||++.|+.||.||...|+...+||.|| ||. +.|.+++++.
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 348999999999999999999999999999999999999999999999999999999999 997 6788888887
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=261.53 Aligned_cols=333 Identities=20% Similarity=0.253 Sum_probs=254.4
Q ss_pred CCCCCCHHHHHHHHhC-CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHH
Q 014314 49 RDFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 127 (427)
Q Consensus 49 ~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 127 (427)
++||++.+..+.|++. .+..++|.|..+|+..+.+.++++..|||.||++||.+|++-.-. .+||+||..+|.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg------~alvi~plislm 147 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADG------FALVICPLISLM 147 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCC------ceEeechhHHHH
Confidence 5788888888888765 678899999999999999999999999999999999999987644 789999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhc--CCCcEEEechHHHHH---HHhc--CCCCCCCccEEEEc
Q 014314 128 YQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKN--ECPQIVVGTPGRILA---LARD--KDLSLKNVRHFILD 197 (427)
Q Consensus 128 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~--~~~~I~v~T~~~l~~---~~~~--~~~~~~~~~~iVvD 197 (427)
+.+.-+++.+ |+....+....+.++. ...+.+ ....+++.||+++.. ++.+ .......+.+|-+|
T Consensus 148 edqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 148 EDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred HHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 9888888877 4554444444332221 111222 335799999998754 1111 22345668899999
Q ss_pred CCcccccC-CCcHHHHHH--HHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec--h
Q 014314 198 ECDKMLES-LDMRRDVQE--IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS--E 272 (427)
Q Consensus 198 Eah~~~~~-~~~~~~~~~--~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 272 (427)
|+|+.+.| ++|++.+.. +++..-++..++++|||..+.+...+...+.-...+....... .+++......-+ .
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fn--r~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFN--RPNLKYEVRQKPGNE 300 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccC--CCCceeEeeeCCCCh
Confidence 99999876 678776554 3555556778999999999888777666554332222222211 122222222111 1
Q ss_pred hhHHHHHHHHHH-hcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcccc
Q 014314 273 LEKNRKLNDLLD-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351 (427)
Q Consensus 273 ~~~~~~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 351 (427)
.+-.+.+..+++ ...+...||||-+++.++.++..|+..|+....||+.|.+.++..+...|-.|+++|+|+|-+.++|
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 222334444443 2355678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCchhhhh-------------------------------------------cccccCCCCCccEE
Q 014314 352 IDIERVNIVINYDMPDSADTYLH-------------------------------------------RVGRAGRFGTKGLA 388 (427)
Q Consensus 352 ld~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~g~~g~~ 388 (427)
+|-|+++.|||...|.|.+.|.| ..||+||.+.+..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999999999 78999999999999
Q ss_pred EEEecC
Q 014314 389 ITFVSS 394 (427)
Q Consensus 389 ~~~~~~ 394 (427)
++||.-
T Consensus 461 ilyy~~ 466 (695)
T KOG0353|consen 461 ILYYGF 466 (695)
T ss_pred EEEech
Confidence 999963
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.4e-34 Score=288.08 Aligned_cols=297 Identities=20% Similarity=0.264 Sum_probs=200.7
Q ss_pred hHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHh-hhccCCCCCCeEEEEEeCch----HHHHHHHHHHHHHhccCCCce
Q 014314 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLST-LQQTEPNPGQVTALVLCHTR----ELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 71 ~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~-~~~~~~~~~~~~~lil~P~~----~L~~q~~~~~~~~~~~~~~~~ 145 (427)
.+-.+.+..+..++.++|+|+||||||+. +|. +.....+. ...+++..|++ +||.++.+++..-. +-.
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~l----G~~ 149 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETEL----GGC 149 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhh----cce
Confidence 34455666666677788999999999994 553 33332222 12455556865 66666666665322 222
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc-cccCCCcHHH-HHHHHHhCCCCc
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDK 223 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~-~~~~~~~~~~-~~~~~~~~~~~~ 223 (427)
+++-.. ...+ . ...++|+|+||+.|+..+.... .++++++||+||||+ .++ .+|... +..++.. .+..
T Consensus 150 VGY~vr---f~~~---~-s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn-~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 150 VGYKVR---FNDQ---V-SDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLN-IDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred eceeec---Cccc---c-CCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccc-cchHHHHHHHhhhc-CCCc
Confidence 322111 1111 1 1236999999999999887654 489999999999995 554 566543 3333322 2467
Q ss_pred eEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh---hHHHHHHHHH---H---hcCCCeEEEE
Q 014314 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL---EKNRKLNDLL---D---ALDFNQVVIF 294 (427)
Q Consensus 224 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l---~---~~~~~~~ivf 294 (427)
|+|+||||++. ..+...+...+ .+.+..... .+...|...... .+...+..++ . ....+.+|||
T Consensus 220 KvILmSATid~--e~fs~~F~~ap-vI~V~Gr~~----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAP-IIEVSGRTY----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCC-EEEEcCccc----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 99999999974 34555554444 344433221 122333322211 1122222222 1 2356889999
Q ss_pred ECCchhHHHHHHHHHhCCCC---eEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC------
Q 014314 295 VKSVSRAAELNKLLVECNFP---SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM------ 365 (427)
Q Consensus 295 ~~~~~~~~~l~~~L~~~~~~---~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~------ 365 (427)
+++..+++.+++.|+..+++ +..+||++++.+|..+++. .|..+|||||+++++|||+|++++||+++.
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999988765 6789999999999999876 477899999999999999999999999863
Q ss_pred ---------C---CCchhhhhcccccCCCCCccEEEEEecC
Q 014314 366 ---------P---DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 366 ---------~---~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
| .|.++|.||+||+||. .+|.|+.+++.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte 410 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSE 410 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCH
Confidence 2 3567899999999999 79999999974
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.3e-33 Score=278.56 Aligned_cols=311 Identities=21% Similarity=0.216 Sum_probs=217.3
Q ss_pred CCchHHHHhHhhhhcC---CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 68 HPSEVQHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
.|++.|+++++.+..+ +++++.|+||||||.+|+.++...+..+ .++||++|+++|+.|+.+.+++.+ +.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f----g~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF----GA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh----CC
Confidence 5899999999999984 7799999999999999988777666543 289999999999999999998754 56
Q ss_pred eEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCC----c-HHHHHHHH
Q 014314 145 KVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD----M-RRDVQEIF 216 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~----~-~~~~~~~~ 216 (427)
.+..++|+.+....... ...+.++|+|+|++.++ ..+.++++||+||+|....... + .+.+. +.
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ 288 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VV 288 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HH
Confidence 88899998876544333 34566799999998764 3578899999999997653211 1 12222 33
Q ss_pred HhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcc-ccccceEEEEEEechhh--------HHHHHHHHHHhc-
Q 014314 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELE--------KNRKLNDLLDAL- 286 (427)
Q Consensus 217 ~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~- 286 (427)
+....+.+++++|||++......+. .+....+....... .... ....+...... -...+..+.+.+
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p--~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLP--EVEIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCC--eEEEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 3445678999999998865443332 11222222221110 0011 11111111100 011222222233
Q ss_pred CCCeEEEEECCc------------------------------------------------------------hhHHHHHH
Q 014314 287 DFNQVVIFVKSV------------------------------------------------------------SRAAELNK 306 (427)
Q Consensus 287 ~~~~~ivf~~~~------------------------------------------------------------~~~~~l~~ 306 (427)
.++++|||++.+ ..++.+++
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e 444 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEE 444 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHH
Confidence 345889988752 14556777
Q ss_pred HHHhC--CCCeEEecCCCC--HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCC--CC----------ch
Q 014314 307 LLVEC--NFPSICIHSGMS--QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--DS----------AD 370 (427)
Q Consensus 307 ~L~~~--~~~~~~l~~~~~--~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~--~s----------~~ 370 (427)
.|++. +.++..+|+++. ..++..+++.|++|+.+|||+|+++++|+|+|+++.|+.++.. .+ .+
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~ 524 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQ 524 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHH
Confidence 77775 788999999987 4578899999999999999999999999999999999765543 22 25
Q ss_pred hhhhcccccCCCCCccEEEEEecCCcc
Q 014314 371 TYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 371 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
.|.|++||+||.++.|.+++.....++
T Consensus 525 ~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 525 LLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 689999999999999999987765443
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2e-33 Score=280.75 Aligned_cols=319 Identities=17% Similarity=0.166 Sum_probs=213.4
Q ss_pred CCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
.|.|+|..+...++.. ..++++.++|.|||+.+.+.+...+..+.. .++|||||. .|+.||..++.+.+ ++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~-~rvLIVvP~-sL~~QW~~El~~kF----~l~ 225 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRA-ERVLILVPE-TLQHQWLVEMLRRF----NLR 225 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCC-CcEEEEcCH-HHHHHHHHHHHHHh----CCC
Confidence 5899999998877653 469999999999998876655554443332 389999996 89999999997654 445
Q ss_pred EEEEEcCcchHHHHH--HHhcCCCcEEEechHHHHHHH-hcCCCCCCCccEEEEcCCcccccCCC-cHHHHHHHHHhCCC
Q 014314 146 VAVFYGGVNIKIHKD--LLKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLD-MRRDVQEIFKMTPH 221 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~--~~~~~~~~I~v~T~~~l~~~~-~~~~~~~~~~~~iVvDEah~~~~~~~-~~~~~~~~~~~~~~ 221 (427)
..++.++........ ... ...+++|+|++.+...- ....+.-..+++||+||||++....+ ....+..+......
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred eEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 554444321111000 000 12479999998876411 11112224688999999999973211 11223333333334
Q ss_pred CceEEEEEccCCcc-H------------------HHHH-------------HHhcC-CC---------------e-----
Q 014314 222 DKQVMMFSATLSKE-I------------------RPVC-------------KKFMQ-DP---------------M----- 248 (427)
Q Consensus 222 ~~~~v~~SAT~~~~-~------------------~~~~-------------~~~~~-~~---------------~----- 248 (427)
...++++||||-.. . ..+. ..++. .+ .
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l 384 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPL 384 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHH
Confidence 45789999997421 0 0000 00000 00 0
Q ss_pred -----------------------------EEEEcCC---ccccccceEEEE-E---------------------------
Q 014314 249 -----------------------------EIYVDDE---AKLTLHGLVQHY-I--------------------------- 268 (427)
Q Consensus 249 -----------------------------~~~~~~~---~~~~~~~~~~~~-~--------------------------- 268 (427)
.+..... ....+....+.+ .
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~ 464 (956)
T PRK04914 385 LQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQI 464 (956)
T ss_pred HhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHH
Confidence 0000000 000000000000 0
Q ss_pred ---------EechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHH-hCCCCeEEecCCCCHHHHHHHHHhhhcC-
Q 014314 269 ---------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGFKEG- 337 (427)
Q Consensus 269 ---------~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~r~~~~~~f~~~- 337 (427)
......|...+..+++.....|+||||+++..+..+.+.|+ ..|+++..+||+|++.+|.++++.|+++
T Consensus 465 ~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~ 544 (956)
T PRK04914 465 YQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEE 544 (956)
T ss_pred HHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCC
Confidence 00112345567777777778999999999999999999994 6699999999999999999999999974
Q ss_pred -CCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEec
Q 014314 338 -NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 338 -~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++.
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 58999999999999999999999999999999999999999999999998776664
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.4e-33 Score=260.44 Aligned_cols=292 Identities=20% Similarity=0.245 Sum_probs=202.9
Q ss_pred CCCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 67 EHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
..|+++|++++.++.. ++.+++++|||+|||.+++..+..... ++|||||+++|+.||.+.+......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~-- 106 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL-- 106 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC--
Confidence 3699999999999999 888999999999999886554444332 4999999999999999777766532
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
...+..+.|+...... ..|.|+|.+.+........+....+++||+||+|++.. ..+ ..+...+...
T Consensus 107 ~~~~g~~~~~~~~~~~--------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a-~~~----~~~~~~~~~~ 173 (442)
T COG1061 107 NDEIGIYGGGEKELEP--------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA-PSY----RRILELLSAA 173 (442)
T ss_pred ccccceecCceeccCC--------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc-HHH----HHHHHhhhcc
Confidence 1234455444322111 26999999999874211222334789999999998865 222 2233333322
Q ss_pred ceEEEEEccCCccHHHHH---HHhcCCCeEEEEcCC-----ccccccceEEEEE--------------------------
Q 014314 223 KQVMMFSATLSKEIRPVC---KKFMQDPMEIYVDDE-----AKLTLHGLVQHYI-------------------------- 268 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------- 268 (427)
..++++|||++....... ....+ +..+..... .............
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 228999999874431111 11111 112111100 0000000000000
Q ss_pred ----------EechhhHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC
Q 014314 269 ----------KLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337 (427)
Q Consensus 269 ----------~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~ 337 (427)
......+...+..++... .+.+++||+.+..++..++..+...+. +..+.+..+..+|..+++.|+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g 331 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG 331 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC
Confidence 011112233344444443 467999999999999999999998888 88899999999999999999999
Q ss_pred CCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCC
Q 014314 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381 (427)
Q Consensus 338 ~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 381 (427)
.+++||++.++.+|+|+|+++++|...+..|...|+||+||+-|
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999
No 83
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=261.32 Aligned_cols=310 Identities=21% Similarity=0.252 Sum_probs=228.5
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
+| .|..+|++|+-++..|.+++|+|+|.+|||.++-.++...-.+.. +++|.+|-++|.+|-++.|+.-+.
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~T---R~iYTSPIKALSNQKfRDFk~tF~----- 365 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMT---RTIYTSPIKALSNQKFRDFKETFG----- 365 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhcc---ceEecchhhhhccchHHHHHHhcc-----
Confidence 44 789999999999999999999999999999988776554433322 899999999999999999987653
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCce
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~ 224 (427)
.+..++|+...... +.++|+|.+.|-+++-++..-++++.+||+||+|.+.+ ...+-.+++++=++|+..+
T Consensus 366 DvgLlTGDvqinPe--------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND-~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 366 DVGLLTGDVQINPE--------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND-VERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred ccceeecceeeCCC--------cceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc-ccccccceeeeeeccccce
Confidence 23488898766544 58999999999999888877889999999999998877 6778889999999999999
Q ss_pred EEEEEccCCccHHHHHHHhcC-CCeEEEEcCCccccccceEEEE----------------------------------EE
Q 014314 225 VMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHY----------------------------------IK 269 (427)
Q Consensus 225 ~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~ 269 (427)
+|++|||.|+. ..++.+..+ ....+++.+..+.+.+. .++. ..
T Consensus 437 ~IlLSATVPN~-~EFA~WIGRtK~K~IyViST~kRPVPL-Eh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 437 FILLSATVPNT-LEFADWIGRTKQKTIYVISTSKRPVPL-EHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred EEEEeccCCCh-HHHHHHhhhccCceEEEEecCCCccce-EEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999999975 344443322 11112222111111100 0000 00
Q ss_pred -----------------------------ech--hhHHHHHHHHHHhc---CCCeEEEEECCchhHHHHHHHHHhCCC--
Q 014314 270 -----------------------------LSE--LEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNF-- 313 (427)
Q Consensus 270 -----------------------------~~~--~~~~~~l~~~l~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~-- 313 (427)
... ..+......+++.+ .--++||||-+++.|+..++.|...++
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 000 00001223333332 335799999999999999999876322
Q ss_pred -------------------------------------CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 314 -------------------------------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 314 -------------------------------------~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
.++.+||++-+--+.-+.-.|..|-++||+||.++++|+|.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 3667899999999999999999999999999999999999995
Q ss_pred CCEEEEcCCC---------CCchhhhhcccccCCCC--CccEEEEEecCC
Q 014314 357 VNIVINYDMP---------DSADTYLHRVGRAGRFG--TKGLAITFVSSA 395 (427)
Q Consensus 357 ~~~vi~~~~~---------~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 395 (427)
-.+|+ -... -.+-+|.||+|||||.| .+|.++++....
T Consensus 675 RtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 675 RTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 55554 3322 26779999999999988 468877777544
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.6e-33 Score=269.94 Aligned_cols=320 Identities=24% Similarity=0.326 Sum_probs=232.7
Q ss_pred CCCCCchHHHHhHhhhhcC-CeEEEEecCCCCcchHHHHHhhhccCCCC--------CCeEEEEEeCchHHHHHHHHHHH
Q 014314 65 GFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP--------GQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
|...++++|.....+.+.+ .++++|||||+|||.++++.+++.+..+. ...+++|++|.++|++.|...|.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 4556999999999999985 56999999999999999999999876543 23589999999999999999988
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccEEEEcCCcccccCCCcHHHHH
Q 014314 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMRRDVQ 213 (427)
Q Consensus 136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~--~~~~~~~iVvDEah~~~~~~~~~~~~~ 213 (427)
+....+ +++|...+|+......... + ..|+||||+++.-.-++... ..+-++++|+||.|.+-+ +.++.+.
T Consensus 386 kRla~~-GI~V~ElTgD~~l~~~qie---e-TqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD--dRGpvLE 458 (1674)
T KOG0951|consen 386 KRLAPL-GITVLELTGDSQLGKEQIE---E-TQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD--DRGPVLE 458 (1674)
T ss_pred hhcccc-CcEEEEecccccchhhhhh---c-ceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc--ccchHHH
Confidence 877777 8999999998654322211 1 48999999999766555332 234688999999998866 3344443
Q ss_pred HH----HHh---CCCCceEEEEEccCCccHHHHHHHhcCCCeEE-EEcCCccccccceEEEEEEechhh---HH-----H
Q 014314 214 EI----FKM---TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI-YVDDEAKLTLHGLVQHYIKLSELE---KN-----R 277 (427)
Q Consensus 214 ~~----~~~---~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~ 277 (427)
.+ .+. ....++++++|||+|+.. +....+..++..+ +.++.. .+..+.+.++.+.... +. .
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~sy--RpvPL~qq~Igi~ek~~~~~~qamNe~ 535 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSY--RPVPLKQQYIGITEKKPLKRFQAMNEA 535 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCccc--CcCCccceEeccccCCchHHHHHHHHH
Confidence 33 222 223678999999999763 3333333333222 232222 2223344444433221 22 2
Q ss_pred HHHHHHHhcCCCeEEEEECCchhHHHHHHHHHh-------------------------------------CCCCeEEecC
Q 014314 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-------------------------------------CNFPSICIHS 320 (427)
Q Consensus 278 ~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~l~~ 320 (427)
...++++....+++|||+.++++....++.++. ..+.++..|+
T Consensus 536 ~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhA 615 (1674)
T KOG0951|consen 536 CYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHA 615 (1674)
T ss_pred HHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeecc
Confidence 344566777779999999999988888877763 1356788999
Q ss_pred CCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE----EcCC------CCCchhhhhcccccCCCCC--ccEE
Q 014314 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----NYDM------PDSADTYLHRVGRAGRFGT--KGLA 388 (427)
Q Consensus 321 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi----~~~~------~~s~~~~~Q~~GR~~R~g~--~g~~ 388 (427)
||+..+|..+.+.|++|+++|+|+|..+++|+|+|.-.++| .|++ +.++.+.+||.|||||.+- .|..
T Consensus 616 Gl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~geg 695 (1674)
T KOG0951|consen 616 GLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEG 695 (1674)
T ss_pred CCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCce
Confidence 99999999999999999999999999999999999777666 2443 2378899999999999764 4555
Q ss_pred EEEecC
Q 014314 389 ITFVSS 394 (427)
Q Consensus 389 ~~~~~~ 394 (427)
++..+.
T Consensus 696 iiit~~ 701 (1674)
T KOG0951|consen 696 IIITDH 701 (1674)
T ss_pred eeccCc
Confidence 555543
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.1e-32 Score=276.96 Aligned_cols=299 Identities=18% Similarity=0.235 Sum_probs=204.0
Q ss_pred HHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 014314 74 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 153 (427)
Q Consensus 74 ~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~ 153 (427)
.+.+..+..++.++|+|+||||||+.. |.+..........++++..|+|-.|..++..+....+...|-.|++-...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTql--Pq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~- 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQL--PKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF- 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHH--HHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC-
Confidence 345555555677899999999999853 43322221122236777889998888888777665432223333332111
Q ss_pred chHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc-cccCCCcHHH-HHHHHHhCCCCceEEEEEcc
Q 014314 154 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 154 ~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~-~~~~~~~~~~-~~~~~~~~~~~~~~v~~SAT 231 (427)
.... +....|.++|++.|+..+.... .+.++++||+||+|+ .++ .++.-. +..++.. .+..|+|+||||
T Consensus 150 --~~~~----s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~-~D~LL~lLk~il~~-rpdLKlIlmSAT 220 (1283)
T TIGR01967 150 --HDQV----SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLN-IDFLLGYLKQLLPR-RPDLKIIITSAT 220 (1283)
T ss_pred --Cccc----CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhcc-chhHHHHHHHHHhh-CCCCeEEEEeCC
Confidence 1111 2225899999999999876644 588999999999995 554 566543 4555443 356899999999
Q ss_pred CCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEech------hhHHHHHHHHHHh---cCCCeEEEEECCchhHH
Q 014314 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE------LEKNRKLNDLLDA---LDFNQVVIFVKSVSRAA 302 (427)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~---~~~~~~ivf~~~~~~~~ 302 (427)
+.. ..+...+...|. +.+..... + +...|..... ..+...+...+.. ...+.+|||+++..+++
T Consensus 221 ld~--~~fa~~F~~apv-I~V~Gr~~-P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~ 293 (1283)
T TIGR01967 221 IDP--ERFSRHFNNAPI-IEVSGRTY-P---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIR 293 (1283)
T ss_pred cCH--HHHHHHhcCCCE-EEECCCcc-c---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHH
Confidence 974 355555544443 33332211 1 1222222111 1122223222221 24589999999999999
Q ss_pred HHHHHHHhCCC---CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC------------
Q 014314 303 ELNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------ 367 (427)
Q Consensus 303 ~l~~~L~~~~~---~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~------------ 367 (427)
.+++.|.+.+. .+..+||++++.+|..+++.+ +..+|||||+++++|||+|++++||+++.++
T Consensus 294 ~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~ 371 (1283)
T TIGR01967 294 DAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQR 371 (1283)
T ss_pred HHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccc
Confidence 99999997654 478899999999999986654 3468999999999999999999999998543
Q ss_pred ------CchhhhhcccccCCCCCccEEEEEecC
Q 014314 368 ------SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 368 ------s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|.++|.||.||+||.| +|.|+.+++.
T Consensus 372 L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte 403 (1283)
T TIGR01967 372 LPIEPISQASANQRKGRCGRVA-PGICIRLYSE 403 (1283)
T ss_pred cCCccCCHHHHHHHhhhhCCCC-CceEEEecCH
Confidence 6679999999999997 9999999974
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-32 Score=259.04 Aligned_cols=292 Identities=20% Similarity=0.207 Sum_probs=196.7
Q ss_pred EEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHh
Q 014314 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLK 163 (427)
Q Consensus 87 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~ 163 (427)
++.|+||||||.+|+..+...+..+. ++||++|+++|+.|+.+.+++.+ +..+.+++++.+..... ....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~---~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK---SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 57899999999998766555544332 89999999999999999998764 45788899987665443 3344
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCC----Cc-HHHHHHHHHhCCCCceEEEEEccCCccHHH
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL----DM-RRDVQEIFKMTPHDKQVMMFSATLSKEIRP 238 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~----~~-~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 238 (427)
++..+|+|+|+..++ ..+.++++|||||.|...-+. .+ .+.+..+.. ...+.+++++|||++.+...
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEEEeCCCCHHHHH
Confidence 566799999998764 357889999999999875321 11 122333333 33567899999997755433
Q ss_pred HHHHhcCCCeEEEEcCCc-cccccceEEEEEEechhh----H-HHHHHHHHHhc-CCCeEEEEECCchh-----------
Q 014314 239 VCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELE----K-NRKLNDLLDAL-DFNQVVIFVKSVSR----------- 300 (427)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~-~~~l~~~l~~~-~~~~~ivf~~~~~~----------- 300 (427)
.+. .+....+...... ..... ....+...... - ...+..+.+.+ .++++|||+|++..
T Consensus 146 ~~~--~g~~~~~~l~~r~~~~~~p--~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~ 221 (505)
T TIGR00595 146 NAK--QKAYRLLVLTRRVSGRKPP--EVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGY 221 (505)
T ss_pred HHh--cCCeEEeechhhhcCCCCC--eEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcC
Confidence 322 1111111111100 00111 11111111111 0 11222222333 34689999776432
Q ss_pred -------------------------------------------------HHHHHHHHHhC--CCCeEEecCCCCHHHH--
Q 014314 301 -------------------------------------------------AAELNKLLVEC--NFPSICIHSGMSQEER-- 327 (427)
Q Consensus 301 -------------------------------------------------~~~l~~~L~~~--~~~~~~l~~~~~~~~r-- 327 (427)
.+.+.+.|++. +.++..+|++++...+
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAH 301 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHH
Confidence 47777888776 7789999999887655
Q ss_pred HHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC------------CchhhhhcccccCCCCCccEEEEEecCC
Q 014314 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 328 ~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
..+++.|++|+.+|||+|+++++|+|+|++++|+.++... ..+.+.|++||+||.++.|.+++.....
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 8899999999999999999999999999999986544331 2456899999999999999998776554
Q ss_pred cc
Q 014314 396 SD 397 (427)
Q Consensus 396 ~~ 397 (427)
++
T Consensus 382 ~~ 383 (505)
T TIGR00595 382 NH 383 (505)
T ss_pred CC
Confidence 44
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.8e-31 Score=248.10 Aligned_cols=325 Identities=21% Similarity=0.249 Sum_probs=241.9
Q ss_pred CCCCHHHHHHHH-hCCCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 51 FLLKPELLRAIV-DSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 51 ~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
++....+++.+. ..+| .||..|++++..|... .+-+++|..|||||++++++++.....+. ++...+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccH
Confidence 344555555554 4577 7999999999999973 34799999999999999999999887655 89999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHH---HHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI---HKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah 200 (427)
.-||.|.++.+.+++..+ +++|..++|...... ....+.+|..+|+|+|..-+. ....+.++.++|+||=|
T Consensus 321 EILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQH 394 (677)
T COG1200 321 EILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccc
Confidence 999999999999999887 899999999876543 344566788899999987664 45678899999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCC-CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHH
Q 014314 201 KMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL 279 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (427)
++.- .. ...+..... .+.++.|||||-+....+ ..+.+... ....+...-...+.-. ..+...+...+
T Consensus 395 RFGV----~Q--R~~L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldv-S~IdElP~GRkpI~T~--~i~~~~~~~v~ 463 (677)
T COG1200 395 RFGV----HQ--RLALREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDV-SIIDELPPGRKPITTV--VIPHERRPEVY 463 (677)
T ss_pred cccH----HH--HHHHHHhCCCCCcEEEEeCCCchHHHHH--HHhccccc-hhhccCCCCCCceEEE--EeccccHHHHH
Confidence 7632 22 222233333 577899999987654333 33333222 1111111111112222 22333333444
Q ss_pred HHHHHhc-CCCeEEEEECCchh--------HHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc
Q 014314 280 NDLLDAL-DFNQVVIFVKSVSR--------AAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 348 (427)
Q Consensus 280 ~~~l~~~-~~~~~ivf~~~~~~--------~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 348 (427)
..+.+.. .+.++.|.|+-+++ +..+++.|+.. ++++..+||.|+.+++.+++..|++|+++|||||.++
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 4443333 56899999988764 45566677643 5679999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCC-CCchhhhhcccccCCCCCccEEEEEecCCc
Q 014314 349 GRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 349 ~~Gld~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
+.|+|+|++++.|+.+.- ...+++-|--||+||.+..+.|++++.+..
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999998877754 478899999999999999999999998765
No 88
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=1.3e-31 Score=266.13 Aligned_cols=312 Identities=21% Similarity=0.233 Sum_probs=205.0
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhcc-CCCce
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIK 145 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~ 145 (427)
.+|+|+|+.+.........++|.+|||+|||.+++.++...+..+. ..+++|..||+++++|+++++.++... ++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3799999988654444566899999999999998877665443332 238999999999999999999875542 23456
Q ss_pred EEEEEcCcchHHHH---------------------HHHh---c--CCCcEEEechHHHHHHHhc-CCCCCCC----ccEE
Q 014314 146 VAVFYGGVNIKIHK---------------------DLLK---N--ECPQIVVGTPGRILALARD-KDLSLKN----VRHF 194 (427)
Q Consensus 146 ~~~~~g~~~~~~~~---------------------~~~~---~--~~~~I~v~T~~~l~~~~~~-~~~~~~~----~~~i 194 (427)
+...+|........ ..+. + -...|+|||.++++..... ....+.. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 77777765322110 1111 0 1148999999998863322 2222222 3479
Q ss_pred EEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEEEccCCccHHHHHHHhcCCC--e-------EEEEcC-Cc--ccccc
Q 014314 195 ILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDP--M-------EIYVDD-EA--KLTLH 261 (427)
Q Consensus 195 VvDEah~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~--~-------~~~~~~-~~--~~~~~ 261 (427)
||||+|.+.. .....+..+++.+ ....++|+||||+|...+..+...+... . .+.... .. .....
T Consensus 444 IiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 444 IVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 9999998843 4444555555443 2356799999999988765443322110 0 000000 00 00000
Q ss_pred c-----eEEEEEEe-----ch-hhHHHHHHHHHHh-cCCCeEEEEECCchhHHHHHHHHHhCC---CCeEEecCCCCHHH
Q 014314 262 G-----LVQHYIKL-----SE-LEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---FPSICIHSGMSQEE 326 (427)
Q Consensus 262 ~-----~~~~~~~~-----~~-~~~~~~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~---~~~~~l~~~~~~~~ 326 (427)
. .....+.. .. ......+..+++. ..+++++|||||++.|+.+++.|++.+ ..+..+||.++..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0 00011111 10 1122344444443 356789999999999999999999764 67899999999999
Q ss_pred HH----HHHHhh-hcCC---CcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCC
Q 014314 327 RL----TRYKGF-KEGN---KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384 (427)
Q Consensus 327 r~----~~~~~f-~~~~---~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (427)
|. ++++.| ++|+ ..|||+|+++++|||+ +++++|....| ...++||+||++|.+.
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 94 567778 5665 4799999999999999 58999987777 5789999999999875
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=2e-31 Score=228.12 Aligned_cols=200 Identities=42% Similarity=0.737 Sum_probs=179.1
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC--CCCeEEEEEeCchH
Q 014314 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRE 125 (427)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~ 125 (427)
|.++++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6789999999999999999999999999999999999999999999999999999999988776 45569999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+...++.+.... ++.+..++|+.........+..+ ++|+|+||+.+...+.+....+.+++++|+||+|.+.+
T Consensus 81 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~- 157 (203)
T cd00268 81 LALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRG-PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD- 157 (203)
T ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCC-CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-
Confidence 9999999999987664 78889999988877666666534 69999999999998888878889999999999999886
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEE
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 250 (427)
..+...+..+...++..+|++++|||+++....++..++.+++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 678888999988888899999999999999988888888877654
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-30 Score=253.76 Aligned_cols=316 Identities=19% Similarity=0.229 Sum_probs=222.7
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
+|+++|-..--.+ .+.-+..++||+|||+++.+|++.....+. .++|++|++.||.|.++++..+...+ ++++.
T Consensus 82 ~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~ 155 (896)
T PRK13104 82 RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVG 155 (896)
T ss_pred CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhccc-CceEE
Confidence 5667776554444 444689999999999999999997765443 68999999999999999999999887 89999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC-CCCC-----CCccEEEEcCCcccccC---------------
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-DLSL-----KNVRHFILDECDKMLES--------------- 205 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~-~~~~-----~~~~~iVvDEah~~~~~--------------- 205 (427)
+++|+.+...+...+. ++|+|+||+.| +.+++.+ ...+ ..+.++|+||||.++-+
T Consensus 156 ~i~gg~~~~~r~~~y~---~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~ 232 (896)
T PRK13104 156 VIYPDMSHKEKQEAYK---ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDS 232 (896)
T ss_pred EEeCCCCHHHHHHHhC---CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccc
Confidence 9999988776665553 69999999999 8888765 2333 58999999999998621
Q ss_pred CCcHHHHHHHHHhCCC--------------CceEEEEE------------------------------------------
Q 014314 206 LDMRRDVQEIFKMTPH--------------DKQVMMFS------------------------------------------ 229 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~--------------~~~~v~~S------------------------------------------ 229 (427)
.........+...+.. ..+.+.+|
T Consensus 233 ~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~ 312 (896)
T PRK13104 233 SELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAH 312 (896)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHH
Confidence 0111111222221111 11122222
Q ss_pred --------------------------------------------------------------------------ccCCcc
Q 014314 230 --------------------------------------------------------------------------ATLSKE 235 (427)
Q Consensus 230 --------------------------------------------------------------------------AT~~~~ 235 (427)
+|....
T Consensus 313 ~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te 392 (896)
T PRK13104 313 AMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTE 392 (896)
T ss_pred HHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhH
Confidence 222111
Q ss_pred HHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHHHhCCC
Q 014314 236 IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNF 313 (427)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~ 313 (427)
...+..-+..+ .+ ..+..+..........+......|...+..-+.. ..+.++||||+|++.++.+++.|.+.|+
T Consensus 393 ~~Ef~~iY~l~--Vv-~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi 469 (896)
T PRK13104 393 AYEFQQIYNLE--VV-VIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENI 469 (896)
T ss_pred HHHHHHHhCCC--EE-ECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 11111111000 00 1111111111111122334455666666555532 3668999999999999999999999999
Q ss_pred CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC-------------------------------------
Q 014314 314 PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER------------------------------------- 356 (427)
Q Consensus 314 ~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~------------------------------------- 356 (427)
+...+|+.+.+.++..+.++|+.|. |+|||++++||+|+.=
T Consensus 470 ~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 470 KHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred CeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 9999999999999999999999995 9999999999999851
Q ss_pred -CCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 357 -VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 357 -~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
-=+||-...+.|..--.|-.||+||.|.+|.+..|++-.++
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12678777888888899999999999999999999985444
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=1.6e-31 Score=247.96 Aligned_cols=320 Identities=18% Similarity=0.236 Sum_probs=240.5
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.+.|+|..++..+-++.++++.|.|.+|||.++-.++...+...+ ++||..|-++|.+|-++++..-++ .|+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~-----DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK-----DVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc-----ccc
Confidence 789999999999999999999999999999999988888887666 999999999999999998876543 466
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
..+|+...+.. +..+|+|.+.|-+++-++..-++.+.+||+||+|.|-+ ...+-.+.+-+-.+|.+.+.++
T Consensus 201 LMTGDVTInP~--------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD-kERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 201 LMTGDVTINPD--------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD-KERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred eeecceeeCCC--------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc-cccceeeeeeEEeccccceEEE
Confidence 77887765543 57999999999999888887889999999999999977 4555556666667888999999
Q ss_pred EEccCCccHHHHHHH---hcCCCeEEEEcCCccccccceEEE------EEEechh------h------------------
Q 014314 228 FSATLSKEIRPVCKK---FMQDPMEIYVDDEAKLTLHGLVQH------YIKLSEL------E------------------ 274 (427)
Q Consensus 228 ~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~------------------ 274 (427)
+|||+|+. ..++++ ....|..+........++...... |..+.+. .
T Consensus 272 LSATiPNA-~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~ 350 (1041)
T KOG0948|consen 272 LSATIPNA-RQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKK 350 (1041)
T ss_pred EeccCCCH-HHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccc
Confidence 99999976 344444 445665554433332222111000 1111100 0
Q ss_pred -------------------HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCC-----------------------
Q 014314 275 -------------------KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN----------------------- 312 (427)
Q Consensus 275 -------------------~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~----------------------- 312 (427)
-...+...+-.....++|||+-++++|+.++-.+....
T Consensus 351 ~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lse 430 (1041)
T KOG0948|consen 351 KANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSE 430 (1041)
T ss_pred ccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcCh
Confidence 00112222222345689999999999999987765521
Q ss_pred ----------------CCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCC---------C
Q 014314 313 ----------------FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP---------D 367 (427)
Q Consensus 313 ----------------~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~---------~ 367 (427)
..+...|+|+-+--++.+.-.|++|-+++|+||.+.+.|||.|.-.+|+ .... -
T Consensus 431 eDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~fRwi 509 (1041)
T KOG0948|consen 431 EDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKFRWI 509 (1041)
T ss_pred hhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCcceeee
Confidence 1356789999998888888899999999999999999999999555444 3321 2
Q ss_pred CchhhhhcccccCCCCC--ccEEEEEecCCccHHHHHHHHH
Q 014314 368 SADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQVQA 406 (427)
Q Consensus 368 s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~ 406 (427)
|--+|+||.|||||.|. .|.|+++++...+....+.+-+
T Consensus 510 ssGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred cccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 56689999999999985 6889999998888877766654
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=4.1e-30 Score=250.21 Aligned_cols=318 Identities=20% Similarity=0.226 Sum_probs=233.9
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|--.--.+..| -+..+.||+|||+++.+|++.....+. .+-|++|+..||.|.++++..+...+ |+
T Consensus 79 g~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~L-Gl 151 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFL-GL 151 (830)
T ss_pred CC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhc-CC
Confidence 44 6788888777666555 589999999999999999964433333 46799999999999999999999887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCCcccccC------------
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES------------ 205 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~~------~~~~~~~~iVvDEah~~~~~------------ 205 (427)
++.++.|+.+...+...+. ++|+++|+..| +++++... ..+..+.++|+||||.++-+
T Consensus 152 sv~~i~~~~~~~er~~~y~---~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 152 SVGVILSGMSPEERREAYA---ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred eEEEEcCCCCHHHHHHhcC---CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999988877776654 69999999999 88887654 23678999999999988611
Q ss_pred ---CCcHHHHHHHHHhCCCC--------c---------------------------------------------------
Q 014314 206 ---LDMRRDVQEIFKMTPHD--------K--------------------------------------------------- 223 (427)
Q Consensus 206 ---~~~~~~~~~~~~~~~~~--------~--------------------------------------------------- 223 (427)
......+..+...+... .
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 01111222222222110 0
Q ss_pred ----------------------------------------------------------eEEEEEccCCccHHHHHHHhcC
Q 014314 224 ----------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQ 245 (427)
Q Consensus 224 ----------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~ 245 (427)
++.+||+|.......+...+..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 3445555554333333222221
Q ss_pred CCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+ .+.++. .+..........+......|...+...+.. ..+.++||||++++.++.+++.|.+.|++...+|+.
T Consensus 389 ~--vv~IPt-nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 D--VVVIPT-NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred C--EEEcCC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 1 111111 111111111223444566788888877755 567899999999999999999999999999999995
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCC--------------------------------------CEEEEcCC
Q 014314 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERV--------------------------------------NIVINYDM 365 (427)
Q Consensus 324 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~--------------------------------------~~vi~~~~ 365 (427)
+.+|...+..|+.+...|+|||++++||+|++-- =|||....
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7789999999999999999999999999998642 26888888
Q ss_pred CCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+.|..--.|-.||+||.|.+|.+..|++-.++
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 99999999999999999999999999985544
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.4e-30 Score=249.72 Aligned_cols=318 Identities=19% Similarity=0.214 Sum_probs=231.0
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|--+--.+..|+ +..+.||+|||+++.+|+......+. .+-+++|+.-||.|-++.+..+...+ |+
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl 150 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWL-GL 150 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhc-CC
Confidence 44 78899988776665564 99999999999999999888877665 78999999999999999999999988 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcC------CCCCCCccEEEEcCCcccccC------------
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLES------------ 205 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~-~~~~~~------~~~~~~~~~iVvDEah~~~~~------------ 205 (427)
+++++.++.+.......+. ++|+++|...|- .+++.+ ..-...+.+.||||+|.++-+
T Consensus 151 ~vg~i~~~~~~~~r~~~y~---~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYN---CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred eEEEeCCCCCHHHHHHHhc---CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 9999999877776665554 599999998763 234332 112356889999999987611
Q ss_pred ---CCcHHHHHHHHHhCCC--------------------C----------------------------------------
Q 014314 206 ---LDMRRDVQEIFKMTPH--------------------D---------------------------------------- 222 (427)
Q Consensus 206 ---~~~~~~~~~~~~~~~~--------------------~---------------------------------------- 222 (427)
......+..+...+.. .
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0000111111110000 0
Q ss_pred --------------------------------------------------------------------ceEEEEEccCCc
Q 014314 223 --------------------------------------------------------------------KQVMMFSATLSK 234 (427)
Q Consensus 223 --------------------------------------------------------------------~~~v~~SAT~~~ 234 (427)
.++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 045556666654
Q ss_pred cHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCC
Q 014314 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECN 312 (427)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~ 312 (427)
....+...+..+ .+.++. .++.........+......|...+...+... .+.++||||+++..++.+++.|.+.|
T Consensus 388 e~~Ef~~iY~l~--vv~IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNME--VITIPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCC--EEEcCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 433333222222 222222 2211111122233345566777777777543 67899999999999999999999999
Q ss_pred CCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCC---CCC-----EEEEcCCCCCchhhhhcccccCCCCC
Q 014314 313 FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGT 384 (427)
Q Consensus 313 ~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (427)
++...+|+++...++..+..+++.|. |+|||++++||+|++ ++. +||+++.|.|...+.|+.||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999998878887777777766 999999999999994 788 99999999999999999999999999
Q ss_pred ccEEEEEecCCcc
Q 014314 385 KGLAITFVSSASD 397 (427)
Q Consensus 385 ~g~~~~~~~~~~~ 397 (427)
+|.+..|++..++
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999986543
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=9.7e-30 Score=255.22 Aligned_cols=332 Identities=19% Similarity=0.207 Sum_probs=219.6
Q ss_pred CCchHHHHhHhhhh----cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
+|++||.+++.+++ .|.++|++.++|.|||+..+..+...........++|||||. ++..||.+++.+|+ |.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~---p~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFC---PV 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHC---CC
Confidence 68999999999986 367899999999999987544332221112222278999995 67799999999886 56
Q ss_pred ceEEEEEcCcchHHH--HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCC
Q 014314 144 IKVAVFYGGVNIKIH--KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~--~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~ 221 (427)
+++..++|....... ...+..+.++|+|+|++.+..... .+.--.+++||+||||.+.+. .....+.+..+..
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~---~Sklskalr~L~a 319 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE---NSLLSKTMRLFST 319 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH---HHHHHHHHHHhhc
Confidence 788888886543222 122233457999999999876332 122235789999999999652 2333444444443
Q ss_pred CceEEEEEccCCcc-HHH---HHHHhc-------------------------------------------------CCCe
Q 014314 222 DKQVMMFSATLSKE-IRP---VCKKFM-------------------------------------------------QDPM 248 (427)
Q Consensus 222 ~~~~v~~SAT~~~~-~~~---~~~~~~-------------------------------------------------~~~~ 248 (427)
...+++||||-.+ ... ++..+. .+..
T Consensus 320 -~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 320 -NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred -CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 3468899997322 111 110000 0000
Q ss_pred E--EEEcCCcc--ccc---------------------------------cceEE------EE----EEechhhHHHHHHH
Q 014314 249 E--IYVDDEAK--LTL---------------------------------HGLVQ------HY----IKLSELEKNRKLND 281 (427)
Q Consensus 249 ~--~~~~~~~~--~~~---------------------------------~~~~~------~~----~~~~~~~~~~~l~~ 281 (427)
. +.+..... ..+ +.+.. .+ .......|...+..
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 0 00000000 000 00000 00 00011234444555
Q ss_pred HHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC---CcEEEEeCCccccCCCCC
Q 014314 282 LLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN---KRILVATDLVGRGIDIER 356 (427)
Q Consensus 282 ~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~---~~vlv~T~~~~~Gld~~~ 356 (427)
++... .++++|||+........+.++|...|+.+..++|+++..+|..+++.|++.. ..+|++|.+++.|||+..
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 55443 4579999999999999999999999999999999999999999999997532 357889999999999999
Q ss_pred CCEEEEcCCCCCchhhhhcccccCCCCCccEEE--EEecCC-ccHHHHHHHHHHhc
Q 014314 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVSSA-SDSDILNQVQARFE 409 (427)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~~~~ 409 (427)
+++||+||++|++....|++||++|.|+...|. .|+..+ -+..++....+++.
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886654 334333 34555555444443
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=8e-29 Score=244.34 Aligned_cols=321 Identities=21% Similarity=0.211 Sum_probs=248.5
Q ss_pred CCCCHHHHHHHHhC-CCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 51 FLLKPELLRAIVDS-GFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 51 ~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
|+.+.......... +| .-|+-|..||..+... .|-+|||..|-|||.+++=+++.....++ +|.|+|||
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK---QVAvLVPT 652 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK---QVAVLVPT 652 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC---eEEEEccc
Confidence 34444555555543 55 4699999999999872 46899999999999999888888877654 99999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchH---HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIK---IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah 200 (427)
.-||.|.++.|+.-+..+ .+++..+.-=.+.+ .-.+.+.+|..||+|+|..-| ...+.+++++++||||=|
T Consensus 653 TlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 653 TLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 999999999999777666 56777665544433 334556678899999997554 356788999999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHH
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (427)
++.- .- ++-++.+..+.-++-+||||-+....+.-.-+++...+...+....+.. .|+..... ..+.
T Consensus 727 RFGV--k~----KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~----T~V~~~d~---~~ir 793 (1139)
T COG1197 727 RFGV--KH----KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVK----TFVSEYDD---LLIR 793 (1139)
T ss_pred hcCc--cH----HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceE----EEEecCCh---HHHH
Confidence 7643 23 3344445566778999999988877776666667666666666654433 23322211 1111
Q ss_pred H-HH-HhcCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 281 D-LL-DALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 281 ~-~l-~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
+ ++ +-.+++++-..+|.++..+.+++.|++. ..++...||.|+..+-+.++..|.+|+.+|||||.+++.|+|+|+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 1 12 2236789999999999999999999986 667889999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCC-CCchhhhhcccccCCCCCccEEEEEecC
Q 014314 357 VNIVINYDMP-DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 357 ~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
++++|.-+.. ...+++.|--||+||.++.+.|+.++.+
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 9998876654 3788999999999999999999999974
No 96
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.3e-29 Score=242.24 Aligned_cols=148 Identities=18% Similarity=0.298 Sum_probs=129.4
Q ss_pred CCCCCCHHHHHHHH-----hCCCCCC---chHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEE
Q 014314 49 RDFLLKPELLRAIV-----DSGFEHP---SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 120 (427)
Q Consensus 49 ~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 120 (427)
+.|.+..++.+.+. .+||..| +|+|.++++.+..+++++..++||+|||++|++|++..+..+. .++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45678888888887 5789887 9999999999999999999999999999999999998775433 47999
Q ss_pred eCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCCCCCC-------Ccc
Q 014314 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKDLSLK-------NVR 192 (427)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~~~~~~-------~~~ 192 (427)
+|+++||.|..+++..+.... ++++.++.||.+...+...+. ++|+|+||++| +++++.+.+.++ .+.
T Consensus 142 TpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y~---~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~ 217 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIYQ---CDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFY 217 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHcC---CCEEEECCChhHHHHhhCCCCCcCHHHhhccccc
Confidence 999999999999999998876 899999999999887776652 69999999999 999987755554 568
Q ss_pred EEEEcCCcccc
Q 014314 193 HFILDECDKML 203 (427)
Q Consensus 193 ~iVvDEah~~~ 203 (427)
++|+||||.++
T Consensus 218 ~~IIDEADsmL 228 (970)
T PRK12899 218 FAIIDEVDSIL 228 (970)
T ss_pred EEEEechhhhh
Confidence 99999999987
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=9.7e-30 Score=250.59 Aligned_cols=317 Identities=19% Similarity=0.229 Sum_probs=234.1
Q ss_pred hCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
..+| .|.++|++++-.+-.+.+++++||||+|||.+...++...+..+. +++|.+|.++|.+|.++.+.......
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv- 189 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV- 189 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh-
Confidence 3455 688999999999999999999999999999998888887777665 69999999999999999998665422
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
.--++.++|+..++.. ..++|+|.+.|-+++.+....+..+.+||+||+|.+.+ ...+..+++.+-.++..
T Consensus 190 ~~~vGL~TGDv~IN~~--------A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D-~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 190 ADMVGLMTGDVSINPD--------APCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGD-RERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhccceecceeeCCC--------CceEEeeHHHHHHHhccCcccccccceEEEEeeeeccc-cccchhHHHHHHhcCCC
Confidence 2246888888776543 68999999999999998888899999999999999987 67788899999999999
Q ss_pred ceEEEEEccCCccHHHHHHHh---cCCCeEEEEcCCccccccceEEE----EEEech-----------------------
Q 014314 223 KQVMMFSATLSKEIRPVCKKF---MQDPMEIYVDDEAKLTLHGLVQH----YIKLSE----------------------- 272 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------------- 272 (427)
.++|++|||+|+. ..+..++ -..+..+........++...... +.....
T Consensus 261 v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 261 VRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred CcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 9999999999975 3343333 22333332222111111100000 000000
Q ss_pred ------------------------hhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC-----------------
Q 014314 273 ------------------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----------------- 311 (427)
Q Consensus 273 ------------------------~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~----------------- 311 (427)
..+...+...+.....-++|+|+-++..|+..+..+...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 001112333333344568999999999999988776521
Q ss_pred -----------CC-------------CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE----Ec
Q 014314 312 -----------NF-------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----NY 363 (427)
Q Consensus 312 -----------~~-------------~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi----~~ 363 (427)
++ .....|++|=+..+..+...|..|-.+|+++|.+++.|+|.|.-++|+ .+
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~ 499 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKF 499 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEe
Confidence 11 134679999999999999999999999999999999999999665555 12
Q ss_pred C----CCCCchhhhhcccccCCCCC--ccEEEEEecC
Q 014314 364 D----MPDSADTYLHRVGRAGRFGT--KGLAITFVSS 394 (427)
Q Consensus 364 ~----~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~ 394 (427)
+ .+-+..+|.|+.|||||.|. .|.+++.-.+
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 2 22378899999999999985 4777776443
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=8.9e-28 Score=204.75 Aligned_cols=311 Identities=16% Similarity=0.226 Sum_probs=212.1
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
++++.|+.+-..++. .++.+|.|-||+|||... ...++...+.++ ++.+.+|+...|..++.+++.-+ ++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~G~--~vciASPRvDVclEl~~Rlk~aF---~~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQGG--RVCIASPRVDVCLELYPRLKQAF---SN 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhcCC--eEEEecCcccchHHHHHHHHHhh---cc
Confidence 789999988777665 678999999999999864 344444433333 88999999999999988887654 35
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCc
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~ 223 (427)
..+..++|+.....+ ..++|+|..+|+++.. .++++|+||+|.+-- ..-........+......
T Consensus 171 ~~I~~Lyg~S~~~fr--------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~-~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 171 CDIDLLYGDSDSYFR--------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPF-SDDQSLQYAVKKARKKEG 234 (441)
T ss_pred CCeeeEecCCchhcc--------ccEEEEehHHHHHHHh-------hccEEEEeccccccc-cCCHHHHHHHHHhhcccC
Confidence 688889997654433 3799999999987543 567899999997643 122222233344444556
Q ss_pred eEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhH------H-HHHHHHHHhc--CCCeEEEE
Q 014314 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK------N-RKLNDLLDAL--DFNQVVIF 294 (427)
Q Consensus 224 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~l~~~l~~~--~~~~~ivf 294 (427)
-+|++|||+++.+...+..- +...+.+....... +.....+.......| . ..+...++.. .+.+++||
T Consensus 235 ~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~-pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 235 ATIYLTATPTKKLERKILKG--NLRILKLPARFHGK-PLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred ceEEEecCChHHHHHHhhhC--CeeEeecchhhcCC-CCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 78999999997655433221 11122222111111 111222222222211 1 2566666655 34789999
Q ss_pred ECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCC--CCch
Q 014314 295 VKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--DSAD 370 (427)
Q Consensus 295 ~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~--~s~~ 370 (427)
+++++..+.+++.|+.. ...+..+|+. ...|.+...+|++|++++||+|.+++||+.+|++++.+.-..- .+.+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999543 3455778875 3478888999999999999999999999999999987754433 5778
Q ss_pred hhhhcccccCCCC-CccEEEEEecCCccHHHHHHHH
Q 014314 371 TYLHRVGRAGRFG-TKGLAITFVSSASDSDILNQVQ 405 (427)
Q Consensus 371 ~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~ 405 (427)
.++|.+||+||.- .+.--+.|++.+-...+.+..+
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 8999999999953 3333455666565555554443
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=4.1e-28 Score=248.19 Aligned_cols=306 Identities=18% Similarity=0.206 Sum_probs=193.0
Q ss_pred CCchHHHHhHhhhhc-----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.++++|.+|+.++.. .+.++++++||||||.+++. ++..+.......++|+|+|+.+|+.|+.+.|+.+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~- 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG- 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc-
Confidence 589999999988763 35689999999999987543 33333322223489999999999999999998763211
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-----CCCCCCccEEEEcCCccccc--------CC---
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLE--------SL--- 206 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-----~~~~~~~~~iVvDEah~~~~--------~~--- 206 (427)
...+..+++... ...........|+|+|++++.+.+... ...+..+++||+||||+-.. ..
T Consensus 491 ~~~~~~i~~i~~---L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 491 DQTFASIYDIKG---LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred ccchhhhhchhh---hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 111111111111 111111223589999999998754321 13467889999999998531 00
Q ss_pred ---CcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHH--------------HhcC---CCeEEEEcCCcc-cc------
Q 014314 207 ---DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK--------------KFMQ---DPMEIYVDDEAK-LT------ 259 (427)
Q Consensus 207 ---~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~-~~------ 259 (427)
.+...+..++..+. ...|++||||......+.. .++. .|..+....... ..
T Consensus 568 ~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 11345666666543 4579999999754332211 1111 122211100000 00
Q ss_pred ---ccceEEEE--EEech--------hh-------HHH----HHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC----
Q 014314 260 ---LHGLVQHY--IKLSE--------LE-------KNR----KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---- 311 (427)
Q Consensus 260 ---~~~~~~~~--~~~~~--------~~-------~~~----~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~---- 311 (427)
.......+ ..... .. ... .+...+....++++||||.++++|+.+.+.|.+.
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 00000000 00000 00 001 1112222224479999999999999999887653
Q ss_pred --CC---CeEEecCCCCHHHHHHHHHhhhcCCC-cEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC
Q 014314 312 --NF---PSICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (427)
Q Consensus 312 --~~---~~~~l~~~~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (427)
++ .+..++|+++ ++..+++.|+++.. .|+|+++++.+|+|+|.+++||++.++.|...|.||+||+.|.
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 22 3556888876 56779999999876 6899999999999999999999999999999999999999995
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.3e-28 Score=239.47 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=221.8
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 149 (427)
+....+.+.++.+++.++|+|+||||||+.....+++.... ...++.+.-|+|-.|..++.++........|-.|++-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 45556677777778889999999999999766656655542 2238899999998888888888766554345555543
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH-HHHHHHHhCCCCceEEEE
Q 014314 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR-DVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 228 (427)
.-..+ .......|-++|.+.|++.+.... .++.+++||+||+|+.+-+.++.- .+..+....+...++|.|
T Consensus 130 iRfe~-------~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 130 IRFES-------KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred EEeec-------cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 22211 112235899999999999888655 489999999999998765455543 344556677767999999
Q ss_pred EccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhh-HHHHHH---HHHHhcCCCeEEEEECCchhHHH
Q 014314 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELE-KNRKLN---DLLDALDFNQVVIFVKSVSRAAE 303 (427)
Q Consensus 229 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~---~~l~~~~~~~~ivf~~~~~~~~~ 303 (427)
|||+... ....++.+...+.++.... .+..+|.... ... -...+. ........+.++||.+...+.+.
T Consensus 202 SATld~~---rfs~~f~~apvi~i~GR~f----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 202 SATLDAE---RFSAYFGNAPVIEIEGRTY----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred ecccCHH---HHHHHcCCCCEEEecCCcc----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9998754 3444555443444433221 1122221111 111 122222 22223356899999999999999
Q ss_pred HHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCC-------------
Q 014314 304 LNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------------- 366 (427)
Q Consensus 304 l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~------------- 366 (427)
+++.|.+ ....+.++||.++..++.++++.-..|+.+|+++|++++++|.+|++++||+-+..
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999997 34678899999999999999888788878899999999999999999999976643
Q ss_pred -----CCchhhhhcccccCCCCCccEEEEEecC
Q 014314 367 -----DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 367 -----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
-|-++..||.|||||. .+|.|+-+++.
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse 386 (845)
T COG1643 355 LETEPISKASADQRAGRAGRT-GPGICYRLYSE 386 (845)
T ss_pred eeEEEechhhhhhhccccccC-CCceEEEecCH
Confidence 3778899999999998 59999999984
No 101
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.5e-28 Score=227.43 Aligned_cols=305 Identities=20% Similarity=0.192 Sum_probs=209.3
Q ss_pred HHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC---CCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEE--
Q 014314 74 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV-- 148 (427)
Q Consensus 74 ~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-- 148 (427)
++++.+|..+--++|||.||||||+.....+.+.-.. ...+..+-|..|+|..|..++.+...-...+ +-.|.+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqI 340 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQI 340 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEE
Confidence 4566666666679999999999998644333333221 1123367888899988888777665433333 333332
Q ss_pred EEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCC----CcHHHHHHHHHhCCC---
Q 014314 149 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL----DMRRDVQEIFKMTPH--- 221 (427)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~----~~~~~~~~~~~~~~~--- 221 (427)
-+.++ .+....|.++|.+.|++.+.+ .+.+..++.||+||||..+-.. ++..++..+.....+
T Consensus 341 Rfd~t---------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 341 RFDGT---------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred Eeccc---------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 22221 222358999999999997774 4568899999999999875432 233444444444333
Q ss_pred ---CceEEEEEccCCccHHHHHHHhc-CCCeEEEEcCCccccccceEEEEEEec----hhhHHHHHHHHHHhcCCCeEEE
Q 014314 222 ---DKQVMMFSATLSKEIRPVCKKFM-QDPMEIYVDDEAKLTLHGLVQHYIKLS----ELEKNRKLNDLLDALDFNQVVI 293 (427)
Q Consensus 222 ---~~~~v~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~iv 293 (427)
..++|+||||+.-....--+.++ ..|..+.++...- .+.-+|.... -.+.......+.+.++.+.+||
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQf----PVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQF----PVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILV 486 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCCCCceeeeecccC----ceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEE
Confidence 56899999998643221112222 2233344432221 1122222211 2235567788889999999999
Q ss_pred EECCchhHHHHHHHHHhC--------------------------------------------------------------
Q 014314 294 FVKSVSRAAELNKLLVEC-------------------------------------------------------------- 311 (427)
Q Consensus 294 f~~~~~~~~~l~~~L~~~-------------------------------------------------------------- 311 (427)
|+....++.++++.|++.
T Consensus 487 FvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ra 566 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRA 566 (1172)
T ss_pred EEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhh
Confidence 999999999999999871
Q ss_pred -------------------------------------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCC
Q 014314 312 -------------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (427)
Q Consensus 312 -------------------------------------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~ 354 (427)
.+.+..+++-++...+.++++.-..|..-++|+|+++++.|.+
T Consensus 567 a~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI 646 (1172)
T KOG0926|consen 567 AFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI 646 (1172)
T ss_pred hhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc
Confidence 0126678888889999999888889999999999999999999
Q ss_pred CCCCEEEEcCCCC------------------CchhhhhcccccCCCCCccEEEEEecC
Q 014314 355 ERVNIVINYDMPD------------------SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 355 ~~~~~vi~~~~~~------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|++++||+++.-+ |.++--||+|||||.| +|+|+.+|++
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999877432 5566689999999986 9999999975
No 102
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=221.62 Aligned_cols=306 Identities=15% Similarity=0.164 Sum_probs=211.9
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 149 (427)
..+-.+.+..+-.++-++|.|+||||||+...--+.+......+ ++.+..|+|-.|..++.+...-....-|-.|++.
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 44456677777778889999999999998644444444333333 5888889999888888777644332224444432
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH-HHHHHHHhCCCCceEEEE
Q 014314 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR-DVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 228 (427)
.- .+........|.++|.+.|++.+.... .++.+++||+||||+..-..+..- .++++++. ++..++|++
T Consensus 131 IR-------Fed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIim 201 (674)
T KOG0922|consen 131 IR-------FEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIM 201 (674)
T ss_pred EE-------ecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEE
Confidence 11 111122235899999999999766544 578999999999997654233222 23333333 345789999
Q ss_pred EccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh----hHHHHHHHHHHhcCCCeEEEEECCchhHHHH
Q 014314 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL----EKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304 (427)
Q Consensus 229 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l 304 (427)
|||+... ....++.....+.+....- .+...|...+.. .....+..+....+++-++||.++.++.+.+
T Consensus 202 SATlda~---kfS~yF~~a~i~~i~GR~f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 202 SATLDAE---KFSEYFNNAPILTIPGRTF----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred eeeecHH---HHHHHhcCCceEeecCCCC----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 9998743 3444544433334433221 112222222211 1223444555556778999999999999999
Q ss_pred HHHHHhC----C--C--CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC-----------
Q 014314 305 NKLLVEC----N--F--PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM----------- 365 (427)
Q Consensus 305 ~~~L~~~----~--~--~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~----------- 365 (427)
++.|.+. + . .+.++||.++.+++.+++..-..|..+|+++|+++++.+.++++..||+-+.
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9999875 1 1 2467999999999999988888899999999999999999999999997663
Q ss_pred -------CCCchhhhhcccccCCCCCccEEEEEecC
Q 014314 366 -------PDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 366 -------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|-|.++..||.|||||. .+|.|+.+|+.
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte 389 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTE 389 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCC-CCceEEEeeeH
Confidence 34788899999999998 59999999974
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=232.43 Aligned_cols=316 Identities=18% Similarity=0.203 Sum_probs=219.4
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.|+++|--.--.+ .+.-+..++||.|||+++.+|++.....+. .+.||+|+..||.+..+++..+...+ |+++.
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~ 155 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFL-GLTVG 155 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEE
Confidence 5677776554443 445789999999999999999987776554 58999999999999999999999887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC-CCC-----CCCccEEEEcCCcccccCC--------------
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-DLS-----LKNVRHFILDECDKMLESL-------------- 206 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~-~~~-----~~~~~~iVvDEah~~~~~~-------------- 206 (427)
++.++.+.......+ .++|+++|++.| +.+++.+ ... ...+.++||||+|.++-+.
T Consensus 156 ~i~~~~~~~~r~~~Y---~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~ 232 (908)
T PRK13107 156 INVAGLGQQEKKAAY---NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDS 232 (908)
T ss_pred EecCCCCHHHHHhcC---CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccc
Confidence 999988764433333 269999999999 8877765 222 2778999999999886320
Q ss_pred -CcHHHHHHHHHhCC-------------------CCceEE----------------------------------------
Q 014314 207 -DMRRDVQEIFKMTP-------------------HDKQVM---------------------------------------- 226 (427)
Q Consensus 207 -~~~~~~~~~~~~~~-------------------~~~~~v---------------------------------------- 226 (427)
.....+..+...+. ...+.+
T Consensus 233 ~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~ 312 (908)
T PRK13107 233 SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNA 312 (908)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHH
Confidence 01111111111110 001112
Q ss_pred ----------------------------------------------------------------------------EEEc
Q 014314 227 ----------------------------------------------------------------------------MFSA 230 (427)
Q Consensus 227 ----------------------------------------------------------------------------~~SA 230 (427)
+||+
T Consensus 313 aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTG 392 (908)
T PRK13107 313 ALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTG 392 (908)
T ss_pred HHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccC
Confidence 2222
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHH
Q 014314 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLL 308 (427)
Q Consensus 231 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L 308 (427)
|.......+..-+..+ .+ ..+..+..........+......|...+..-+.. ..+.++||||.+++.++.+++.|
T Consensus 393 Ta~te~~Ef~~iY~l~--Vv-~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 393 TADTEAFEFQHIYGLD--TV-VVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred CChHHHHHHHHHhCCC--EE-ECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 2221111111111000 00 0111111101111112233445566555544442 25689999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC--------------------------------
Q 014314 309 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER-------------------------------- 356 (427)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~-------------------------------- 356 (427)
...|++...+|+.+++.++..+..+|+.|. |+|||++++||+|+.=
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999988 9999999999999851
Q ss_pred -----CCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 357 -----VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 357 -----~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
-=+||-...+.|..--.|-.||+||.|.+|.+..|++-.++
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12688888888999999999999999999999999986544
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=227.39 Aligned_cols=355 Identities=18% Similarity=0.231 Sum_probs=237.4
Q ss_pred CCCCHHHHHHHHhCCCCCCchHHHHhH--hhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHH
Q 014314 51 FLLKPELLRAIVDSGFEHPSEVQHECI--PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (427)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i--~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (427)
.+++....-..+..|+..++.+|.+++ +.++.+++.+...||+.|||++..+.++.......+ .++.+.|..+.+.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQ 283 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhH
Confidence 333333334445568999999999886 677789999999999999999999988887665544 7899999988888
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCccEEEEcCCcccccCC
Q 014314 129 QICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILDECDKMLESL 206 (427)
Q Consensus 129 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~--~~~~~~~~~iVvDEah~~~~~~ 206 (427)
.-...+..+.... |+.+..+.|........+. -.|.|||.++-..++..- ...+..+++|||||.|.+.+ .
T Consensus 284 Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~k~-----~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d-~ 356 (1008)
T KOG0950|consen 284 EKISALSPFSIDL-GFPVEEYAGRFPPEKRRKR-----ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD-K 356 (1008)
T ss_pred HHHhhhhhhcccc-CCcchhhcccCCCCCcccc-----eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec-c
Confidence 8777777777776 8888888876554332221 389999999877655431 22456788999999998887 4
Q ss_pred CcHHHHHHHH-----HhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHH
Q 014314 207 DMRRDVQEIF-----KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281 (427)
Q Consensus 207 ~~~~~~~~~~-----~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (427)
+.+..++.++ .......|+|+||||+++. ..+..++....... .....++......-.......+...+..
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t--~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTT--RFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheec--ccCcccchhccCCCcccccchhhHHHHH
Confidence 5554444443 2233446899999999975 23333333221111 1111000000000000000002222222
Q ss_pred HH--------------------Hhc-CCCeEEEEECCchhHHHHHHHHHh------------------------------
Q 014314 282 LL--------------------DAL-DFNQVVIFVKSVSRAAELNKLLVE------------------------------ 310 (427)
Q Consensus 282 ~l--------------------~~~-~~~~~ivf~~~~~~~~~l~~~L~~------------------------------ 310 (427)
+- +.. .+.++||||++++.|+.++..+..
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 22 111 234699999999999988755533
Q ss_pred --------CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcC----CCCCchhhhhcccc
Q 014314 311 --------CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD----MPDSADTYLHRVGR 378 (427)
Q Consensus 311 --------~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~----~~~s~~~~~Q~~GR 378 (427)
..+.+..+|++++.++|..+...|++|.+.|++||++++.|+|+|..+++|-.. ...+..+|.||+||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 013477789999999999999999999999999999999999999888877422 33477799999999
Q ss_pred cCCCCC--ccEEEEEecCCccHHHHHHHHHHhccccccCCcccCCC
Q 014314 379 AGRFGT--KGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 422 (427)
Q Consensus 379 ~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 422 (427)
|||+|- .|.+++++...+..... +.+...++++.....++
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~----~lv~~~~~~~~S~l~~e 634 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVR----ELVNSPLKPLNSCLSNE 634 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHH----HHHhccccccccccccc
Confidence 999974 58888888765443333 44455555554444443
No 105
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=6.1e-27 Score=218.55 Aligned_cols=316 Identities=22% Similarity=0.285 Sum_probs=217.9
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.++++|-+.++++.. |-+++++..+|.|||+..+ +++..+.. .+...+-||+||...| .+|..++++|+ |
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~---P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFT---P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhC---C
Confidence 689999999999886 6779999999999998743 34443332 2212267999998776 55888888886 7
Q ss_pred CceEEEEEcCcchH--HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC
Q 014314 143 DIKVAVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220 (427)
Q Consensus 143 ~~~~~~~~g~~~~~--~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~ 220 (427)
++++.+++|+.... ...+.+..+..+|+++|++..++- +..+.--.++++||||||++.+ ....+.++++.+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN---~~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKN---EKSKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcc---hhhHHHHHHHHhc
Confidence 89999999986432 223334445689999999988763 1112224678999999999975 3444556666555
Q ss_pred CCceEEEEEccCCcc-HH---HHHHH-------------------------------------------------hcCCC
Q 014314 221 HDKQVMMFSATLSKE-IR---PVCKK-------------------------------------------------FMQDP 247 (427)
Q Consensus 221 ~~~~~v~~SAT~~~~-~~---~~~~~-------------------------------------------------~~~~~ 247 (427)
... .+++|+||-.+ +. .++.. .+.+.
T Consensus 317 ~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred ccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 433 47788886221 10 00000 00000
Q ss_pred eE--EEEc---------------------CCc---cccccce--------EEEE---------------EEechhhHHHH
Q 014314 248 ME--IYVD---------------------DEA---KLTLHGL--------VQHY---------------IKLSELEKNRK 278 (427)
Q Consensus 248 ~~--~~~~---------------------~~~---~~~~~~~--------~~~~---------------~~~~~~~~~~~ 278 (427)
.. +++. ... +..+.++ .+.| ..+....|...
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 00 0000 000 0000000 0000 00112335556
Q ss_pred HHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC---CcEEEEeCCccccCC
Q 014314 279 LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN---KRILVATDLVGRGID 353 (427)
Q Consensus 279 l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~---~~vlv~T~~~~~Gld 353 (427)
|..+|..+ .+++|+||.+.....+.+..++--+++....+.|.++.++|...++.|.... .-+|++|.+.+.|+|
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 66666654 5689999999999999999999999999999999999999999999997543 346889999999999
Q ss_pred CCCCCEEEEcCCCCCchhhhhcccccCCCCCccEE--EEEecC
Q 014314 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSS 394 (427)
Q Consensus 354 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~ 394 (427)
+..+++||.||..|++..-+|.+.||+|.|+...+ +.+++.
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEecc
Confidence 99999999999999999999999999999986554 445543
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=3.1e-27 Score=196.30 Aligned_cols=165 Identities=24% Similarity=0.448 Sum_probs=138.1
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 149 (427)
||+|.++++.+..++++++.+|||+|||+++++++++.+... ...++++++|+++|+.|..+.+..+... ++.++..+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccc-cccccccc
Confidence 689999999999999999999999999999999999988766 3349999999999999999999998876 47889999
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCC--CceEEE
Q 014314 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH--DKQVMM 227 (427)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 227 (427)
+++............+.++|+|+||+++...+......+.++++||+||+|.+..+ .+...+..+...+.. ..|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTTSEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCCCcEEE
Confidence 99887653333333444799999999999999886667778999999999999873 777778888777633 588999
Q ss_pred EEccCCccHH
Q 014314 228 FSATLSKEIR 237 (427)
Q Consensus 228 ~SAT~~~~~~ 237 (427)
+|||++..++
T Consensus 158 ~SAT~~~~~~ 167 (169)
T PF00270_consen 158 LSATLPSNVE 167 (169)
T ss_dssp EESSSTHHHH
T ss_pred EeeCCChhHh
Confidence 9999995544
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=213.66 Aligned_cols=327 Identities=16% Similarity=0.163 Sum_probs=218.5
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
..+++-.+.+.++..++-++|.|.||||||+....-+.+.-...+ +.++-+..|+|..|+.++.++..-.+..-|-.|+
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~-gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG-GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC-CceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 456777788888888889999999999999864433444333333 3357888899999999887765433211122222
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
+ ....+.......-|-++|.++|++.+... .++.++++|||||||...-..+..-.+.+-+..+.+..++++
T Consensus 344 Y-------sIRFEdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllI 415 (902)
T KOG0923|consen 344 Y-------SIRFEDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLI 415 (902)
T ss_pred e-------EEEeccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEe
Confidence 1 11112222222468899999999966543 478899999999999765433333333333444557889999
Q ss_pred EEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHH-HHHHH---HhcCCCeEEEEECCchhHHH
Q 014314 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK-LNDLL---DALDFNQVVIFVKSVSRAAE 303 (427)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l---~~~~~~~~ivf~~~~~~~~~ 303 (427)
.|||+... ....++.+...+.+... ..+ +...|-..++.+-... +..++ ...+.+-+|||....++.+.
T Consensus 416 sSAT~DAe---kFS~fFDdapIF~iPGR-RyP---Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 416 SSATMDAE---KFSAFFDDAPIFRIPGR-RYP---VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eccccCHH---HHHHhccCCcEEeccCc-ccc---eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 99998743 33344444333333222 111 1222333333332222 22222 22366889999999999888
Q ss_pred HHHHHHhC---------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC---------
Q 014314 304 LNKLLVEC---------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM--------- 365 (427)
Q Consensus 304 l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~--------- 365 (427)
+.+.|.+. .+-+.++|+++|.+.+..+++.-.+|..+|++||+++++.|.++++..||+-++
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 87777653 245678999999999999988888999999999999999999999999996553
Q ss_pred ---------CCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhcccccc
Q 014314 366 ---------PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 414 (427)
Q Consensus 366 ---------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (427)
|.|.++..||+|||||.| +|.|+.+|+. +.|.+.++..--.++++
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~---~aY~~eLE~~t~PEIqR 622 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA---WAYEHELEEMTVPEIQR 622 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeech---hhhhhhhccCCCcceee
Confidence 347778899999999986 9999999973 34555665554344433
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=5.6e-26 Score=226.76 Aligned_cols=323 Identities=19% Similarity=0.247 Sum_probs=210.9
Q ss_pred CCchHHHHhHhhhhc---CC-eEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAIL---GM-DVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~---~~-~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
..++.|..++..+.. .. .+++.||||+|||.+.+.++...... .....+++++.|++++++++++.++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 348999999998887 34 68899999999999999998888766 3344599999999999999999999876553
Q ss_pred CceEEEEEcCcchHHHHH-------------HHhcCCCcEEEechHHHHHHHhc-CCCC-C--CCccEEEEcCCcccccC
Q 014314 143 DIKVAVFYGGVNIKIHKD-------------LLKNECPQIVVGTPGRILALARD-KDLS-L--KNVRHFILDECDKMLES 205 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~-------------~~~~~~~~I~v~T~~~l~~~~~~-~~~~-~--~~~~~iVvDEah~~~~~ 205 (427)
+......++......... ........+.++|+......... .... + -..+.+|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 222111233222111000 00111124555555555442211 1111 1 13467999999988763
Q ss_pred CCcHHHHHHHH-HhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcccc--ccceEEE-EEEechhhHHHHHHH
Q 014314 206 LDMRRDVQEIF-KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT--LHGLVQH-YIKLSELEKNRKLND 281 (427)
Q Consensus 206 ~~~~~~~~~~~-~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~l~~ 281 (427)
. ....+..+. .....+..+++||||+|+.....+.........+......... ....... ...............
T Consensus 354 ~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 354 T-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred c-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 2 333333333 3333467899999999999998888877655444332110000 0000000 011111100011222
Q ss_pred HHH-hcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh----cCCCcEEEEeCCccccCCCCC
Q 014314 282 LLD-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 282 ~l~-~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~----~~~~~vlv~T~~~~~Gld~~~ 356 (427)
... ...+++++|.|||+..|..+++.|+..+.++..+||.+...+|.+.++.+. .++..|+|||++++.|+|+.
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 222 224589999999999999999999998888999999999999988877543 56788999999999999984
Q ss_pred CCEEEEcCCCCCchhhhhcccccCCCC--CccEEEEEecCC
Q 014314 357 VNIVINYDMPDSADTYLHRVGRAGRFG--TKGLAITFVSSA 395 (427)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 395 (427)
.+.+|- -+....+.+||+||++|.| ..|.++++....
T Consensus 512 fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 776664 2344678999999999999 567777776543
No 109
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=219.44 Aligned_cols=316 Identities=18% Similarity=0.201 Sum_probs=226.1
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.-+..++..+.++.+++.++|.|+||+|||+....-+++.....+...++++-.|+|--|..+++++..--....+-.|+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 34677888899988899999999999999998777788776555566788999999988888888776433333354555
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
+-.+..+.. .....+++||.+.|++.+.. ...+..+.+||+||+|+..-..+|.-.+.+.+-...++.++|+
T Consensus 253 Yqvrl~~~~-------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 253 YQVRLESKR-------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred EEEeeeccc-------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 443332211 11148999999999998887 5578899999999999988777887777776666778899999
Q ss_pred EEccCCccHHHHHHHhcCCCeEEEEcCCcccc---------------ccceEEE------------EEEechhhHHHHHH
Q 014314 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT---------------LHGLVQH------------YIKLSELEKNRKLN 280 (427)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~------------~~~~~~~~~~~~l~ 280 (427)
||||+..+ ....++.....+.+....... .....+. ...+........+.
T Consensus 325 MSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~ 401 (924)
T KOG0920|consen 325 MSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIE 401 (924)
T ss_pred eeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHH
Confidence 99998633 222233222222221110000 0000000 00001111222333
Q ss_pred HHH----HhcCCCeEEEEECCchhHHHHHHHHHhC-------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc
Q 014314 281 DLL----DALDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (427)
Q Consensus 281 ~~l----~~~~~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 349 (427)
.++ +....+.+|||.++..++..+.+.|... .+-+.++|+.|+..+++.+++....|..+|+++|++++
T Consensus 402 ~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE 481 (924)
T KOG0920|consen 402 DLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE 481 (924)
T ss_pred HHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh
Confidence 333 3334689999999999999999999752 24567899999999999999988999999999999999
Q ss_pred ccCCCCCCCEEEEcCCC------------------CCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 350 RGIDIERVNIVINYDMP------------------DSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 350 ~Gld~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
.+|.++++-+||+.+.- -|.+.-.||.|||||. ++|.|+-++...
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999975532 1566778999999997 899999998753
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.7e-24 Score=208.81 Aligned_cols=287 Identities=21% Similarity=0.303 Sum_probs=201.0
Q ss_pred HHHhC-CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 60 AIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 60 ~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
...+. |+ .|+..|+--...++.|+++-+.||||.|||+--++..+-...+++ +++||+||..|+.|+++.++++.
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgk---r~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGK---RVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCC---eEEEEecCHHHHHHHHHHHHHHH
Confidence 33444 44 899999999999999999999999999999754444443333332 89999999999999999999998
Q ss_pred ccCCCceEEE-EEcCcchH---HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC---------
Q 014314 139 TYLPDIKVAV-FYGGVNIK---IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES--------- 205 (427)
Q Consensus 139 ~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~--------- 205 (427)
....+..+.. +|+....+ +-.+.+.+++.+|+|+|.+-|..-...- .-.+|++|++|.+|.++..
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHH
Confidence 6653344433 66664443 3456677788999999987776533321 1136889999999987632
Q ss_pred -CCcHH-----------------------HHHHHHH--------hCCCCceEEEEEccCCccH-H-HHHHHhcCCCeEEE
Q 014314 206 -LDMRR-----------------------DVQEIFK--------MTPHDKQVMMFSATLSKEI-R-PVCKKFMQDPMEIY 251 (427)
Q Consensus 206 -~~~~~-----------------------~~~~~~~--------~~~~~~~~v~~SAT~~~~~-~-~~~~~~~~~~~~~~ 251 (427)
.+|.. .+.+..+ ...+..+++..|||..+.- + .+.+.++.-.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---- 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---- 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----
Confidence 11111 0111111 1223457999999986542 1 2233333211
Q ss_pred EcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECC---chhHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 014314 252 VDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS---VSRAAELNKLLVECNFPSICIHSGMSQEERL 328 (427)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~---~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~ 328 (427)
+. .......++...+... .-...+..+++.+. ...|||++. ++.+++++++|+..|+++..+|+. ..
T Consensus 304 vG-~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 304 VG-SGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred cC-ccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 11 1222334444444443 44566677777775 478999999 899999999999999999999983 36
Q ss_pred HHHHhhhcCCCcEEEEe----CCccccCCCCC-CCEEEEcCCC
Q 014314 329 TRYKGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMP 366 (427)
Q Consensus 329 ~~~~~f~~~~~~vlv~T----~~~~~Gld~~~-~~~vi~~~~~ 366 (427)
..++.|..|++++||+. .++.+|+|+|. ++.+|+++.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 67899999999999976 57889999997 8899999988
No 111
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=7.3e-26 Score=208.69 Aligned_cols=309 Identities=16% Similarity=0.157 Sum_probs=207.4
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
....++.+.+.-+..++-++|.++||||||+...--+++.-....+ .+-+..|+|..|..++.++..-....-|-.|+
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 3456677777777778889999999999998755444444443333 56777799999999988776544221133333
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
+. ...+.....+..|-++|.+.|++..-.. ..+..+++||+||||...-+.+..-.+.+.......+.++|.
T Consensus 434 Ys-------IRFEdvT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 434 YS-------IRFEDVTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred eE-------EEeeecCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 21 1112222233579999999998854433 357789999999999876544444444444444455789999
Q ss_pred EEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHH-HHHHHH---HHhcCCCeEEEEECCchhHHH
Q 014314 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN-RKLNDL---LDALDFNQVVIFVKSVSRAAE 303 (427)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~---l~~~~~~~~ivf~~~~~~~~~ 303 (427)
+|||+.. ..+. .++++-..++++.... + +.-.+...+..... ..+... ....+.+.++||.+..+..+-
T Consensus 506 tSATm~a--~kf~-nfFgn~p~f~IpGRTy---P-V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~ 578 (1042)
T KOG0924|consen 506 TSATMDA--QKFS-NFFGNCPQFTIPGRTY---P-VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIEC 578 (1042)
T ss_pred eeccccH--HHHH-HHhCCCceeeecCCcc---c-eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhH
Confidence 9999874 3343 3444333333332221 1 11112222221111 122222 222356889999999887666
Q ss_pred HHHHHHh----C------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC--------
Q 014314 304 LNKLLVE----C------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM-------- 365 (427)
Q Consensus 304 l~~~L~~----~------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~-------- 365 (427)
.+..++. . ++.++.+++.++.+-+.+++..-..|..+++|||+++++.|.+|++.+||..++
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 5555443 1 578899999999999999988888899999999999999999999999998774
Q ss_pred ----------CCCchhhhhcccccCCCCCccEEEEEecC
Q 014314 366 ----------PDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 366 ----------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|-|.+..-||.|||||.| +|.|+.+|..
T Consensus 659 ~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 659 RIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 347777889999999985 9999999974
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.9e-25 Score=214.64 Aligned_cols=317 Identities=21% Similarity=0.247 Sum_probs=214.0
Q ss_pred CCchHHHHhHhhhhcC----CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.+++-|+.++..+... +..++.|.||||||.+|+-.+-..+..++ .+|+++|-.+|..|+.++|+..+ +
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF----g 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF----G 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh----C
Confidence 6788999999999875 55999999999999999887777777664 89999999999999999998776 5
Q ss_pred ceEEEEEcCcchHHHHHHH---hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC----CCcHHHHHHHH
Q 014314 144 IKVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----LDMRRDVQEIF 216 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~---~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~----~~~~~~~~~~~ 216 (427)
.++.+++++.+.....+.+ ..+...|+|+|-..++ ..++++++|||||=|.-.-. ..+..+-..++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 6889999988776554444 4577899999988776 47889999999999965421 12223333344
Q ss_pred HhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcc-ccccceEEEEEEech--hhH-----HHHHHHHHHhc-C
Q 014314 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSE--LEK-----NRKLNDLLDAL-D 287 (427)
Q Consensus 217 ~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~-----~~~l~~~l~~~-~ 287 (427)
+....++++|+-|||++-+....+ ..+....+....... ...... ..+.... ... ...+..+-+.+ .
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v--~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ 419 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRV--EIIDMRKEPLETGRSLSPALLEAIRKTLER 419 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcc--eEEeccccccccCccCCHHHHHHHHHHHhc
Confidence 444457889999999886544433 222222222221111 111111 1111111 011 12222222222 4
Q ss_pred CCeEEEEECCchhH------------------------------------------------------------HHHHHH
Q 014314 288 FNQVVIFVKSVSRA------------------------------------------------------------AELNKL 307 (427)
Q Consensus 288 ~~~~ivf~~~~~~~------------------------------------------------------------~~l~~~ 307 (427)
++++|+|.|.+-.+ +.+++.
T Consensus 420 geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterieee 499 (730)
T COG1198 420 GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEE 499 (730)
T ss_pred CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHH
Confidence 56788888774433 233333
Q ss_pred HHhC--CCCeEEecCCCCHH--HHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC------------Cchh
Q 014314 308 LVEC--NFPSICIHSGMSQE--ERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADT 371 (427)
Q Consensus 308 L~~~--~~~~~~l~~~~~~~--~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~------------s~~~ 371 (427)
|++. +.++..+.++.+.. .-...++.|.+|+.+|||.|++++.|.|+|+++.|..++... ....
T Consensus 500 L~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fql 579 (730)
T COG1198 500 LKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQL 579 (730)
T ss_pred HHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHH
Confidence 3332 44566666655543 346778999999999999999999999999999987655332 3445
Q ss_pred hhhcccccCCCCCccEEEEEecCCccHHHHH
Q 014314 372 YLHRVGRAGRFGTKGLAITFVSSASDSDILN 402 (427)
Q Consensus 372 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 402 (427)
+.|.+|||||.+.+|.+++-....++..+..
T Consensus 580 l~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~ 610 (730)
T COG1198 580 LMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610 (730)
T ss_pred HHHHHhhhccCCCCCeEEEEeCCCCcHHHHH
Confidence 7899999999999999998887666544433
No 113
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.5e-24 Score=203.69 Aligned_cols=328 Identities=19% Similarity=0.194 Sum_probs=215.7
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.|.++|+..+.++.. +...++...+|.|||+..+ ..+..+... .-..++|||||. .+..||..++..|. |
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~---p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWW---P 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhC---c
Confidence 678999999999986 5569999999999997633 333333322 212379999995 78899999998886 5
Q ss_pred CceEEEEEcCcch--------HHHHHH-H---hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH
Q 014314 143 DIKVAVFYGGVNI--------KIHKDL-L---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (427)
Q Consensus 143 ~~~~~~~~g~~~~--------~~~~~~-~---~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~ 210 (427)
.++|.++++..+. ....+. + ...+..|+++|++.+--. ...+.-..+.++|+||.|.+-+. + .
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp-n--s 354 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP-N--S 354 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC-c--c
Confidence 6799999887662 111111 1 112347999999877432 22233356789999999999752 2 2
Q ss_pred HHHHHHHhCCCCceEEEEEccCCcc-HHHHH-------------------------------------------------
Q 014314 211 DVQEIFKMTPHDKQVMMFSATLSKE-IRPVC------------------------------------------------- 240 (427)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~~------------------------------------------------- 240 (427)
.+....+.++ ..+.|.+|+|+-.+ +..+.
T Consensus 355 ~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 355 KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 2222233332 23456677774211 00000
Q ss_pred --------H-------H-hcCC--CeEEEEcC-----------------------Ccc-----------ccccceEEE--
Q 014314 241 --------K-------K-FMQD--PMEIYVDD-----------------------EAK-----------LTLHGLVQH-- 266 (427)
Q Consensus 241 --------~-------~-~~~~--~~~~~~~~-----------------------~~~-----------~~~~~~~~~-- 266 (427)
+ . .+.. ...+...- ... +..+.+...
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 0 0 0000 00000000 000 000000000
Q ss_pred --------E-EEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHH-hCCCCeEEecCCCCHHHHHHHHHhh
Q 014314 267 --------Y-IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGF 334 (427)
Q Consensus 267 --------~-~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~r~~~~~~f 334 (427)
+ .......|...+..++... .+.++++|..++.....+...|. ..|+.+..+.|.++...|+.+++.|
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 0 1122334666777777644 56799999999999999999999 5799999999999999999999999
Q ss_pred hcCCC--cEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEE--EEecCC--ccHHHHHHHHH
Q 014314 335 KEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVSSA--SDSDILNQVQA 406 (427)
Q Consensus 335 ~~~~~--~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~--~~~~~~~~~~~ 406 (427)
++++. -+|++|.+.+-|+|+.+++-||+||+.|+++.-.|..-||.|.|++..++ .+++.. ++.-|.+.+.+
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 97764 35779999999999999999999999999999999999999999876544 455544 33334444443
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=6.3e-24 Score=207.63 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=111.1
Q ss_pred echhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC
Q 014314 270 LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (427)
Q Consensus 270 ~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 347 (427)
.....|...+...+... .+.++||||+|++.++.+++.|...|++...+|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 34556777887777554 6789999999999999999999999999999997 6889999999999999999999999
Q ss_pred ccccCCCC---CCC-----EEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 348 VGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 348 ~~~Gld~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
++||+|++ .+. +||.+..|.|...|.|+.||+||.|.+|.++.|++..++
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 443 458889999999999999999999999999999985443
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=9.9e-23 Score=199.07 Aligned_cols=108 Identities=23% Similarity=0.383 Sum_probs=102.4
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcC--
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD-- 364 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~-- 364 (427)
.+.++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+++|||||+.+++|+|+|++++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---CCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 365 ---MPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 365 ---~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
.|.+..+|+||+||+||. ..|.+++|++..
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 799999999999999997 689999888753
No 116
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.92 E-value=9.2e-24 Score=198.12 Aligned_cols=330 Identities=17% Similarity=0.208 Sum_probs=221.7
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
+|.+||.-.++++.- +-+.+++.++|.|||.. +++.+..+...+...+-|||||...| ..|.+++.+|+ |.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwC---Ps 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWC---PS 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhC---Cc
Confidence 578999999998874 55689999999999965 34444444333333378999998776 66777887776 78
Q ss_pred ceEEEEEcCcchHHHHHHHh-c--CCCcEEEechHHHHHHH-hcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhC
Q 014314 144 IKVAVFYGGVNIKIHKDLLK-N--ECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~-~--~~~~I~v~T~~~l~~~~-~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~ 219 (427)
++|..++|........+... . ..++|+++|+.....-- .+..+.-.+|+++|+||+|.+.+ ....++..+...-
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN--~~SeRy~~LM~I~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN--RTSERYKHLMSIN 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc--cchHHHHHhcccc
Confidence 89999999875544433322 2 36899999998664311 11112345678999999998876 3333444444332
Q ss_pred CCCceEEEEEccCCcc-HHHH---------------------------------------------HH------------
Q 014314 220 PHDKQVMMFSATLSKE-IRPV---------------------------------------------CK------------ 241 (427)
Q Consensus 220 ~~~~~~v~~SAT~~~~-~~~~---------------------------------------------~~------------ 241 (427)
..+.+++|+||-.+ +..+ ++
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34457788885111 0000 00
Q ss_pred -Hh---cCCCe-EEE-E------------------------cCC--ccc----------cccce--EEEE----------
Q 014314 242 -KF---MQDPM-EIY-V------------------------DDE--AKL----------TLHGL--VQHY---------- 267 (427)
Q Consensus 242 -~~---~~~~~-~~~-~------------------------~~~--~~~----------~~~~~--~~~~---------- 267 (427)
.. +.+.. .+. + ... ... ..+.+ ...|
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 00 00000 000 0 000 000 00000 0000
Q ss_pred ---------------------------------------------EEechhhHHHHHHHHHHhc--CCCeEEEEECCchh
Q 014314 268 ---------------------------------------------IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSR 300 (427)
Q Consensus 268 ---------------------------------------------~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~ 300 (427)
..+....|...|..+|... .+++|++|.+....
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 0011234555666776654 45899999999999
Q ss_pred HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC-C-cEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccc
Q 014314 301 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-K-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378 (427)
Q Consensus 301 ~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~-~-~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR 378 (427)
.+.+...|...++....+.|.+.-..|+.+++.|...+ + -+|++|.+.+.|||+.++++||.+|...++..-.|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999998654 2 457899999999999999999999999999999999999
Q ss_pred cCCCCCc--cEEEEEecCCccHHHHHHHHH
Q 014314 379 AGRFGTK--GLAITFVSSASDSDILNQVQA 406 (427)
Q Consensus 379 ~~R~g~~--g~~~~~~~~~~~~~~~~~~~~ 406 (427)
++|.|+. -.++.+++...-.+.+..+.+
T Consensus 870 cHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred HHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 9999975 456677776666665555554
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=1.1e-22 Score=201.18 Aligned_cols=299 Identities=16% Similarity=0.175 Sum_probs=179.5
Q ss_pred CCchHHHHhHhhhhc----------CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAIL----------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
-++++|..|+..+.. .+..+|+++||||||++.+..+...+ .....+++|+|+|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 478999999988753 24699999999999988665544433 2233458999999999999999999887
Q ss_pred hccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCc-cEEEEcCCcccccCCCcHHHHHH
Q 014314 138 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNV-RHFILDECDKMLESLDMRRDVQE 214 (427)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~--~~~~~~~-~~iVvDEah~~~~~~~~~~~~~~ 214 (427)
.... . .+..+.......+......|+|+|.++|...+... ....... .+||+||||+... ..+..
T Consensus 317 ~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-----~~~~~ 384 (667)
T TIGR00348 317 QKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-----GELAK 384 (667)
T ss_pred CCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-----hHHHH
Confidence 5311 1 11122233334444444589999999998643321 1111112 2799999996533 22333
Q ss_pred HH-HhCCCCceEEEEEccCCccHHH-HHHHh---cCCCeEEEEcCCccccccceEE-EEEE------e------------
Q 014314 215 IF-KMTPHDKQVMMFSATLSKEIRP-VCKKF---MQDPMEIYVDDEAKLTLHGLVQ-HYIK------L------------ 270 (427)
Q Consensus 215 ~~-~~~~~~~~~v~~SAT~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~------~------------ 270 (427)
.+ ..++ +...+++||||-..... -...+ .+++...+.-...- ....... .|.. .
T Consensus 385 ~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI-~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 385 NLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAI-RDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHh-hcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 33 3444 46799999998532110 00111 11121111000000 0000000 0000 0
Q ss_pred --------chh-------------------hHHHH-HHHHHHh----c--CCCeEEEEECCchhHHHHHHHHHhC-----
Q 014314 271 --------SEL-------------------EKNRK-LNDLLDA----L--DFNQVVIFVKSVSRAAELNKLLVEC----- 311 (427)
Q Consensus 271 --------~~~-------------------~~~~~-l~~~l~~----~--~~~~~ivf~~~~~~~~~l~~~L~~~----- 311 (427)
... ..... ...+++. . .+.++||||.++..|..+.+.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000 00000 1111111 1 2489999999999999999988664
Q ss_pred CCCeEEecCCCCHH---------------------HHHHHHHhhhc-CCCcEEEEeCCccccCCCCCCCEEEEcCCCCCc
Q 014314 312 NFPSICIHSGMSQE---------------------ERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSA 369 (427)
Q Consensus 312 ~~~~~~l~~~~~~~---------------------~r~~~~~~f~~-~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~ 369 (427)
+...+.+++..+.. ....+++.|++ +..+|||+++++.+|+|.|.+++++...+..+.
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h 622 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH 622 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc
Confidence 23445555543322 12367888865 688999999999999999999999987766654
Q ss_pred hhhhhcccccCCC
Q 014314 370 DTYLHRVGRAGRF 382 (427)
Q Consensus 370 ~~~~Q~~GR~~R~ 382 (427)
.++|++||+.|.
T Consensus 623 -~LlQai~R~nR~ 634 (667)
T TIGR00348 623 -GLLQAIARTNRI 634 (667)
T ss_pred -HHHHHHHHhccc
Confidence 689999999993
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.6e-22 Score=182.52 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=123.3
Q ss_pred CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh-cCCCeEEEEECCchh
Q 014314 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA-LDFNQVVIFVKSVSR 300 (427)
Q Consensus 222 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~~~ 300 (427)
..|+|++|||+.+.-..... ..-..-.+.+.+-..+.. .+......-...+.++... ..+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~i----evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPEI----EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCce----eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 35999999999865332221 111122222222211110 1111122223344444432 256899999999999
Q ss_pred HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcC-----CCCCchhhhhc
Q 014314 301 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD-----MPDSADTYLHR 375 (427)
Q Consensus 301 ~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~-----~~~s~~~~~Q~ 375 (427)
|+.+.++|.+.|+++..+|+++..-+|..++...+.|.++|||.-+.+-+|||+|.|..|.++| +.+|..+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 45699999999
Q ss_pred ccccCCCCCccEEEEEecC
Q 014314 376 VGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 376 ~GR~~R~g~~g~~~~~~~~ 394 (427)
+|||+| +-.|.+++|.+.
T Consensus 539 IGRAAR-N~~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAAR-NVNGKVILYADK 556 (663)
T ss_pred HHHHhh-ccCCeEEEEchh
Confidence 999999 468898888763
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=4.8e-22 Score=202.77 Aligned_cols=347 Identities=16% Similarity=0.190 Sum_probs=213.0
Q ss_pred CHHHHHHHHhCCCCCCchHHHHhHh----hhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHH
Q 014314 54 KPELLRAIVDSGFEHPSEVQHECIP----QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (427)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~~Q~~~i~----~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (427)
++...+.+...||+ +++.|.+.+. .+..++++++.||||+|||++|++|++..... + .+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~-~--~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT-E--KPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC-C--CeEEEEeCcHHHHHH
Confidence 34667777778886 7899998666 44458889999999999999999999887662 2 289999999999999
Q ss_pred HHH-HHHHHhccCC-CceEEEEEcCcchH---------------HH--------------------------------HH
Q 014314 130 ICH-EFERFSTYLP-DIKVAVFYGGVNIK---------------IH--------------------------------KD 160 (427)
Q Consensus 130 ~~~-~~~~~~~~~~-~~~~~~~~g~~~~~---------------~~--------------------------------~~ 160 (427)
+.. .+..+.+.++ .+++..+.|+.++- .. ..
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~ 387 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFA 387 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHH
Confidence 865 5555544431 36777777654320 00 00
Q ss_pred HHh-----------------------cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC------CCc---
Q 014314 161 LLK-----------------------NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDM--- 208 (427)
Q Consensus 161 ~~~-----------------------~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~------~~~--- 208 (427)
.+. ...++|+|+++..|+..+.....-+...+++||||||.+.+. ..+
T Consensus 388 ~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~ 467 (850)
T TIGR01407 388 QVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYA 467 (850)
T ss_pred HhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHH
Confidence 000 011579999999998866444334566789999999988521 000
Q ss_pred --HH----------------------------------------------------------------HHHHHHHh----
Q 014314 209 --RR----------------------------------------------------------------DVQEIFKM---- 218 (427)
Q Consensus 209 --~~----------------------------------------------------------------~~~~~~~~---- 218 (427)
.. .+......
T Consensus 468 ~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 547 (850)
T TIGR01407 468 DIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDD 547 (850)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 00 00000000
Q ss_pred --------------------------------------------CCCCceEEEEEccCCcc--HHHHHHHhcCCCeE-EE
Q 014314 219 --------------------------------------------TPHDKQVMMFSATLSKE--IRPVCKKFMQDPME-IY 251 (427)
Q Consensus 219 --------------------------------------------~~~~~~~v~~SAT~~~~--~~~~~~~~~~~~~~-~~ 251 (427)
.+....+|++|||+... ...+...+..+... ..
T Consensus 548 ~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~ 627 (850)
T TIGR01407 548 FKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNT 627 (850)
T ss_pred HHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccce
Confidence 00112688999999732 23333333222111 11
Q ss_pred EcCCccccccceEEEEEE--ec------hhhHHHH----HHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC----CCCe
Q 014314 252 VDDEAKLTLHGLVQHYIK--LS------ELEKNRK----LNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----NFPS 315 (427)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~--~~------~~~~~~~----l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~ 315 (427)
.. ............++. .+ ...-... +..++.. .+++++||+++.+..+.+++.|... ++.
T Consensus 628 ~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~- 704 (850)
T TIGR01407 628 IE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE- 704 (850)
T ss_pred ec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCce-
Confidence 11 001010111111111 11 1111122 2233333 4479999999999999999999752 333
Q ss_pred EEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCC--EEEEcCCCC--------------------------
Q 014314 316 ICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN--IVINYDMPD-------------------------- 367 (427)
Q Consensus 316 ~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~--~vi~~~~~~-------------------------- 367 (427)
.+..+.. ..|..+++.|++++..||++|+.+++|+|+|+.. +||..+.|.
T Consensus 705 -~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~ 782 (850)
T TIGR01407 705 -VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY 782 (850)
T ss_pred -EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh
Confidence 2333333 4788899999999999999999999999999865 577777663
Q ss_pred ----CchhhhhcccccCCCCCccEEEEEecCC-ccHHHHHHHHHHhc
Q 014314 368 ----SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 409 (427)
Q Consensus 368 ----s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 409 (427)
....+.|.+||.-|..++..++++++.. ....|-+.+-+.++
T Consensus 783 ~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 783 VLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 1234579999999987766667777654 34444455555543
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.9e-24 Score=191.05 Aligned_cols=292 Identities=18% Similarity=0.178 Sum_probs=194.0
Q ss_pred CCCchHHHHhHhhhhcC---CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 67 EHPSEVQHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
..++|+|++++..+.-+ ++.+|+.|+|+|||++-+-++.. +.+ ++|++|.+...++||..+++.|+..- +
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-ikK-----~clvLcts~VSVeQWkqQfk~wsti~-d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-IKK-----SCLVLCTSAVSVEQWKQQFKQWSTIQ-D 373 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-ecc-----cEEEEecCccCHHHHHHHHHhhcccC-c
Confidence 37899999999998863 56999999999999875443333 222 79999999999999999999998765 4
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--------CCCCCccEEEEcCCcccccCCCcHHHHHHH
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--------LSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~--------~~~~~~~~iVvDEah~~~~~~~~~~~~~~~ 215 (427)
-.+..++.+... ....+ +.|+|+|+.++..--.+.. +.-..++++++||+|.+-. ..|++.+.-+
T Consensus 374 ~~i~rFTsd~Ke-----~~~~~-~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~MFRRVlsiv 446 (776)
T KOG1123|consen 374 DQICRFTSDAKE-----RFPSG-AGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KMFRRVLSIV 446 (776)
T ss_pred cceEEeeccccc-----cCCCC-CcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HHHHHHHHHH
Confidence 466677665332 12233 5899999988754322211 1235678999999998765 3444444333
Q ss_pred HHhCCCCceEEEEEccCCccHHHHHHH-hcC--------------CCeEEEEcCCccc------------cccceEEEEE
Q 014314 216 FKMTPHDKQVMMFSATLSKEIRPVCKK-FMQ--------------DPMEIYVDDEAKL------------TLHGLVQHYI 268 (427)
Q Consensus 216 ~~~~~~~~~~v~~SAT~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~------------~~~~~~~~~~ 268 (427)
... + .+++|||+-.+...+... ++. .-..-.+.....+ ..........
T Consensus 447 ~aH----c-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QAH----C-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHH----h-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 332 2 388999985442221110 000 0000011100000 0000111122
Q ss_pred EechhhHH---HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh-cCCCcEEEE
Q 014314 269 KLSELEKN---RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK-EGNKRILVA 344 (427)
Q Consensus 269 ~~~~~~~~---~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~-~~~~~vlv~ 344 (427)
.+....|. +.|..+.+. ++.++|||..+.-....++-.|.+ -.++|.+++.+|.++++.|+ +..++.++.
T Consensus 522 yvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 23333343 445555555 679999999887776666555433 36899999999999999997 567889999
Q ss_pred eCCccccCCCCCCCEEEEcCCC-CCchhhhhcccccCCCC
Q 014314 345 TDLVGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFG 383 (427)
Q Consensus 345 T~~~~~Gld~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g 383 (427)
+.++...+|+|.++++|+...- .|..+-.||.||.-|+.
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999999999999999987644 47788999999999853
No 121
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=1.2e-24 Score=212.77 Aligned_cols=330 Identities=19% Similarity=0.222 Sum_probs=215.8
Q ss_pred CCCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhccC
Q 014314 67 EHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL 141 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 141 (427)
.+++.+|-+.+++++. +++++++.++|.|||...+ ..+..+.. ..-....|||+|...+ ..|.++|..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---
Confidence 5899999999999886 7889999999999996643 23332221 1122267999998665 55888888886
Q ss_pred CCceEEEEEcCcchHHHHHH---HhcC-----CCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHH
Q 014314 142 PDIKVAVFYGGVNIKIHKDL---LKNE-----CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQ 213 (427)
Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~---~~~~-----~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~ 213 (427)
++++.+++|.......... +... .++++++|++.++.-.. .+.--.+.++++||||++.+. ...+.
T Consensus 444 -~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~---~~~l~ 517 (1373)
T KOG0384|consen 444 -DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND---ESKLY 517 (1373)
T ss_pred -hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch---HHHHH
Confidence 6799999998754433222 2222 37899999999876222 122235678999999999752 22333
Q ss_pred HHHHhCCCCceEEEEEccCCc-cHHHHHHHh-cCCCeEEE-----------------------------------EcCCc
Q 014314 214 EIFKMTPHDKQVMMFSATLSK-EIRPVCKKF-MQDPMEIY-----------------------------------VDDEA 256 (427)
Q Consensus 214 ~~~~~~~~~~~~v~~SAT~~~-~~~~~~~~~-~~~~~~~~-----------------------------------~~~~~ 256 (427)
..+..+.-. ..+++|+||-. .+..+...+ +..|..+. ++...
T Consensus 518 ~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveksl 596 (1373)
T KOG0384|consen 518 ESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSL 596 (1373)
T ss_pred HHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCC
Confidence 333333332 34778888643 222221110 00010000 00000
Q ss_pred ccccc-----------------------------------ce-----------EEEEEEechh-----------------
Q 014314 257 KLTLH-----------------------------------GL-----------VQHYIKLSEL----------------- 273 (427)
Q Consensus 257 ~~~~~-----------------------------------~~-----------~~~~~~~~~~----------------- 273 (427)
..... .+ .+.|..-...
T Consensus 597 p~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~ 676 (1373)
T KOG0384|consen 597 PPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQ 676 (1373)
T ss_pred CCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHH
Confidence 00000 00 0001100000
Q ss_pred ------hHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc---CCCcEE
Q 014314 274 ------EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE---GNKRIL 342 (427)
Q Consensus 274 ------~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~---~~~~vl 342 (427)
.|.-.|..+|-.+ .+++||||.+.+...+.|+++|..++++.-.|.|.+..+.|++.++.|.. ..+.+|
T Consensus 677 ~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFL 756 (1373)
T KOG0384|consen 677 ALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFL 756 (1373)
T ss_pred HHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEE
Confidence 0111222333322 46899999999999999999999999999999999999999999999974 455689
Q ss_pred EEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccE--EEEEecCC-ccHHHHHHHHHHh
Q 014314 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL--AITFVSSA-SDSDILNQVQARF 408 (427)
Q Consensus 343 v~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~-~~~~~~~~~~~~~ 408 (427)
+||.+.+.|||+..+++||+||..|+++.-+|...||+|.|++.. ++.|++.. -+.+++..-..++
T Consensus 757 LSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 757 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKM 825 (1373)
T ss_pred EecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998765 44556543 3444444443333
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.7e-22 Score=190.98 Aligned_cols=317 Identities=19% Similarity=0.175 Sum_probs=216.0
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|--+.-.++.| -+..+.||.|||+++.+|+......+. .+.|++|+.-||.|-++++..+...+ |+
T Consensus 76 g~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~L-GL 148 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEAL-GL 148 (764)
T ss_pred CC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhc-CC
Confidence 44 7889999998888876 577999999999999999887776554 78999999999999999999999887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcC------CCCCCCccEEEEcCCcccccC------------
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLES------------ 205 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~-~~~~~~------~~~~~~~~~iVvDEah~~~~~------------ 205 (427)
++.++.++.+.......+. ++|+++|..-+- .+++.+ ..-...+.+.||||+|.++-+
T Consensus 149 svg~i~~~~~~~err~aY~---~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 149 TVGWITEESTPEERRAAYA---CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred EEEEECCCCCHHHHHHHHc---CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 9999999877666655554 599999997652 233322 122466889999999987611
Q ss_pred --CCcHHHHHHHHHhCCCC--------c----------------------------------------------------
Q 014314 206 --LDMRRDVQEIFKMTPHD--------K---------------------------------------------------- 223 (427)
Q Consensus 206 --~~~~~~~~~~~~~~~~~--------~---------------------------------------------------- 223 (427)
......+..+...+... .
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00111111222211110 0
Q ss_pred ----------------------------------------------------------eEEEEEccCCccHHHHHHHhcC
Q 014314 224 ----------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQ 245 (427)
Q Consensus 224 ----------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~ 245 (427)
++.+||+|.......+..-+..
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 3445555554433333322222
Q ss_pred CCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHH-h-cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-A-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+ .+.++...+...... ...+......|...+.+-+. . ..+.++||.+.+++..+.+++.|.+.|++...+++.-.
T Consensus 386 ~--Vv~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 G--VSVIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred c--EEECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 1 111221111111111 11233344556655554443 2 26689999999999999999999999999999998744
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC---------------CCEEEEcCCCCCchhhhhcccccCCCCCccEE
Q 014314 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIER---------------VNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 388 (427)
Q Consensus 324 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~---------------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 388 (427)
..+-..+-++=+ ...|.|||++++||.|+.- -=|||....+.|..--.|-.||+||.|.+|.+
T Consensus 463 ~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 463 AEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred HhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCce
Confidence 333222222222 2359999999999999852 23788888999999999999999999999999
Q ss_pred EEEecCCc
Q 014314 389 ITFVSSAS 396 (427)
Q Consensus 389 ~~~~~~~~ 396 (427)
..|++-.+
T Consensus 541 ~f~lSleD 548 (764)
T PRK12326 541 VFFVSLED 548 (764)
T ss_pred eEEEEcch
Confidence 99998543
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=3.4e-23 Score=196.74 Aligned_cols=293 Identities=18% Similarity=0.226 Sum_probs=189.3
Q ss_pred CCchHHHHhHhhhhc----C-CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAIL----G-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.++.+|..||..+.. | +.+|+++.||+|||.+++ .++..+.+.+..-++|+|+-+++|+.|....+..+...
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-- 241 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-- 241 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC--
Confidence 689999999988775 3 349999999999998754 44444444333339999999999999999888877643
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-----CCCCCCccEEEEcCCcccccCCCcHHHHHHHHH
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-----~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~ 217 (427)
+-.+..+.+... . +.+.|.++|++.+....... .+....|++||+||||+ +.......++.
T Consensus 242 ~~~~n~i~~~~~-~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-----gi~~~~~~I~d 307 (875)
T COG4096 242 GTKMNKIEDKKG-D--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-----GIYSEWSSILD 307 (875)
T ss_pred ccceeeeecccC-C--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh-----hHHhhhHHHHH
Confidence 223333333211 1 12589999999998877654 23345599999999994 44455556666
Q ss_pred hCCCCceEEEEEccCCccHHHHHHHhc-CCCeEEE------------------Ec----CCcccc----------ccce-
Q 014314 218 MTPHDKQVMMFSATLSKEIRPVCKKFM-QDPMEIY------------------VD----DEAKLT----------LHGL- 263 (427)
Q Consensus 218 ~~~~~~~~v~~SAT~~~~~~~~~~~~~-~~~~~~~------------------~~----~~~~~~----------~~~~- 263 (427)
.+..-. +++||||........-.++ +.|...+ +. ..+... ...+
T Consensus 308 YFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~ 385 (875)
T COG4096 308 YFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID 385 (875)
T ss_pred HHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC
Confidence 655433 4459998764322222222 2222211 10 000000 0000
Q ss_pred -EEEEEEec-----------hhhHHHHHHHHHHh--cC--CCeEEEEECCchhHHHHHHHHHhC-----CCCeEEecCCC
Q 014314 264 -VQHYIKLS-----------ELEKNRKLNDLLDA--LD--FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGM 322 (427)
Q Consensus 264 -~~~~~~~~-----------~~~~~~~l~~~l~~--~~--~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~l~~~~ 322 (427)
........ .......+.+++.. .. .+|+||||.+..+|+.+...|... +--+..+.|+.
T Consensus 386 ~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 386 EDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred cccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 00000000 01112234444444 11 469999999999999999999875 23345567654
Q ss_pred CHHHHHHHHHhhhc--CCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCC
Q 014314 323 SQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381 (427)
Q Consensus 323 ~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 381 (427)
... +..++.|.. .-..|.|+.+++.+|+|+|.|.+++++..-.|...|.||+||+-|
T Consensus 466 ~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 466 EQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred hhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 433 344666654 334688899999999999999999999999999999999999999
No 124
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.89 E-value=3.7e-22 Score=194.90 Aligned_cols=328 Identities=16% Similarity=0.203 Sum_probs=217.4
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCC------CCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.+|.||++.++++.. +=+.++|..+|-|||+..+..+.....+. -.....|||||+ .|+--|..++++|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 679999999998875 45699999999999998654433322222 123358999995 7999999999988
Q ss_pred hccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHH
Q 014314 138 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (427)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~ 217 (427)
+. -+++..+.|+.......+.-.+. .+|+|++|+.+.+-+.. +.-..+.++|+||-|.+.+ -...+.+..+
T Consensus 1054 ~p---fL~v~~yvg~p~~r~~lR~q~~~-~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN---~ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FP---FLKVLQYVGPPAERRELRDQYKN-ANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKN---SKTKLTKAVK 1124 (1549)
T ss_pred cc---hhhhhhhcCChHHHHHHHhhccc-cceEEeeHHHHHHHHHH--HHhcccceEEecCcceecc---hHHHHHHHHH
Confidence 74 46888888876544443333333 59999999988652221 1123566899999998865 3444444455
Q ss_pred hCCCCceEEEEEccCCcc-HHH----------------------------------------------------------
Q 014314 218 MTPHDKQVMMFSATLSKE-IRP---------------------------------------------------------- 238 (427)
Q Consensus 218 ~~~~~~~~v~~SAT~~~~-~~~---------------------------------------------------------- 238 (427)
.+.... .+.+|+||-.+ +.+
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 544443 36678885211 000
Q ss_pred ------------------------------HHHHhcCC---CeEEEEcCCcccccc--------------ceEEE--EE-
Q 014314 239 ------------------------------VCKKFMQD---PMEIYVDDEAKLTLH--------------GLVQH--YI- 268 (427)
Q Consensus 239 ------------------------------~~~~~~~~---~~~~~~~~~~~~~~~--------------~~~~~--~~- 268 (427)
+.+.+... ......+. ...... .+..+ .+
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~-~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDG-GEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcccccccccc-chhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 00000000 00000000 000000 00000 00
Q ss_pred ----------------------EechhhHHHHHHHHHHhc----------------CCCeEEEEECCchhHHHHHHHHHh
Q 014314 269 ----------------------KLSELEKNRKLNDLLDAL----------------DFNQVVIFVKSVSRAAELNKLLVE 310 (427)
Q Consensus 269 ----------------------~~~~~~~~~~l~~~l~~~----------------~~~~~ivf~~~~~~~~~l~~~L~~ 310 (427)
......|...+..++... ..++++|||+-+..++.+.+.|-+
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 011233555666666443 246899999999999999998876
Q ss_pred CC---CCeEEecCCCCHHHHHHHHHhhhcC-CCcEEE-EeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCc
Q 014314 311 CN---FPSICIHSGMSQEERLTRYKGFKEG-NKRILV-ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 385 (427)
Q Consensus 311 ~~---~~~~~l~~~~~~~~r~~~~~~f~~~-~~~vlv-~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 385 (427)
.- +....+.|..++.+|+++.++|+++ .++||+ +|.+.+.|+|+.++++||+++-.|++..-+|.+.||+|.|++
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 53 3344689999999999999999998 788766 779999999999999999999999999999999999999987
Q ss_pred cE--EEEEecCCccHHHHHHHHHH
Q 014314 386 GL--AITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 386 g~--~~~~~~~~~~~~~~~~~~~~ 407 (427)
.. ++.++..+.-.+-+-.++++
T Consensus 1443 rvVNVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1443 RVVNVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred eeeeeeeehhcccHHHHHhhHHHH
Confidence 66 45566666555555555543
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=7.8e-21 Score=187.36 Aligned_cols=132 Identities=22% Similarity=0.361 Sum_probs=119.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC-
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 365 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~- 365 (427)
.+.++||||++.+.++.+++.|...|+++..+||++++.+|..+++.|+.|++.|+|||+.+++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ----CCCchhhhhcccccCCCCCccEEEEEecCC--------ccHHHHHHHHHHhccccccCCccc
Q 014314 366 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSA--------SDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 366 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
|.+..+|+||+||+||. ..|.+++|++.. .+....+.++..++.+..-+|..+
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 78999999999999995 789999999742 466677788888888888887655
No 126
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.4e-22 Score=177.39 Aligned_cols=326 Identities=15% Similarity=0.177 Sum_probs=210.5
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
...|...+.++.-.+.|++..-...+..+.+-+..+.+++-+++.|+||||||....-+.+........ .+....|+|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~--~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT--GVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc--ceeecCchH
Confidence 556888888988888887664434455566666666667789999999999998766666655443332 567777999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
..|++++.+...-. +++.+.-.| +....+.......-+-+||.++|++..-.. -.+.++++||+||||+..-
T Consensus 102 vaamsva~RVadEM----Dv~lG~EVG---ysIrfEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtl 173 (699)
T KOG0925|consen 102 VAAMSVAQRVADEM----DVTLGEEVG---YSIRFEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTL 173 (699)
T ss_pred HHHHHHHHHHHHHh----ccccchhcc---ccccccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhH
Confidence 99999887665433 222222111 111111111111123466777776643332 2468899999999997643
Q ss_pred CCCc-HHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhh----HHHHH
Q 014314 205 SLDM-RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE----KNRKL 279 (427)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l 279 (427)
..+. .-.++.+.... ++.++|.+|||+-. .....++.+...+.+.... +. ...|......+ ....+
T Consensus 174 ATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~~--Pv---Ei~Yt~e~erDylEaairtV 244 (699)
T KOG0925|consen 174 ATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGTH--PV---EIFYTPEPERDYLEAAIRTV 244 (699)
T ss_pred HHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCCCC--ce---EEEecCCCChhHHHHHHHHH
Confidence 2222 22344455544 58899999999763 3445556665555554411 11 11222122222 22344
Q ss_pred HHHHHhcCCCeEEEEECCchhHHHHHHHHHhC---------CCCeEEecCCCCHHHHHHHHHhhhc---C--CCcEEEEe
Q 014314 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------NFPSICIHSGMSQEERLTRYKGFKE---G--NKRILVAT 345 (427)
Q Consensus 280 ~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~f~~---~--~~~vlv~T 345 (427)
..+.....++-++||..+.++.+..++.+... ..++..+| +.++..+++.-.. | ..+|+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 44545556789999999999999999888753 25677788 4455555444321 2 34799999
Q ss_pred CCccccCCCCCCCEEEEcCC------------------CCCchhhhhcccccCCCCCccEEEEEecC
Q 014314 346 DLVGRGIDIERVNIVINYDM------------------PDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
++++..+.++++.+||+-++ |-|..+..||.||+||. ++|.|+.+|..
T Consensus 321 niaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 99999999999999997553 44788899999999997 89999999973
No 127
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=187.81 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=114.1
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.|..+|++.+..+-.+.+++|.|||.+|||.+...++-..+...... .+|+++|+++|+.|+...+........-.+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 57899999999998999999999999999988776666666555554 79999999999999998887654221111222
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc---CCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCce
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD---KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~---~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~ 224 (427)
.+.|....+.... .-.+.|+|+-|+.+..++.. .....+.++++|+||+|.+.. ..-.-.+.++.... .+.
T Consensus 590 sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~-~ed~l~~Eqll~li--~CP 663 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN-EEDGLLWEQLLLLI--PCP 663 (1330)
T ss_pred hhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc-cccchHHHHHHHhc--CCC
Confidence 2333222111111 11259999999999997766 344568899999999998876 34444444444443 367
Q ss_pred EEEEEccCCcc
Q 014314 225 VMMFSATLSKE 235 (427)
Q Consensus 225 ~v~~SAT~~~~ 235 (427)
++++|||+.+.
T Consensus 664 ~L~LSATigN~ 674 (1330)
T KOG0949|consen 664 FLVLSATIGNP 674 (1330)
T ss_pred eeEEecccCCH
Confidence 89999998643
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=7.6e-21 Score=183.09 Aligned_cols=316 Identities=16% Similarity=0.134 Sum_probs=200.9
Q ss_pred CCchHHHHhHhhhhc---C-------CeEEEEecCCCCcchHHHHHhhhccCCCCC----CeEEEEEeCchHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAIL---G-------MDVICQAKSGMGKTAVFVLSTLQQTEPNPG----QVTALVLCHTRELAYQICHE 133 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~---~-------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~ 133 (427)
.++|+|++.+.-+.. | ...+++..+|+|||+..+..+...+...+. .-++|||+| ..|+..|..+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 578999999987765 2 237889999999998755444433433332 137899999 5899999999
Q ss_pred HHHHhccCCCceEEEEEcCcch--HHHHHH----HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCC
Q 014314 134 FERFSTYLPDIKVAVFYGGVNI--KIHKDL----LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207 (427)
Q Consensus 134 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~----~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~ 207 (427)
|.+|.... .+....++|..+. ...... +..-..-|++.+++.+...++. +....++++|+||.|++.+
T Consensus 317 F~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN--- 390 (776)
T KOG0390|consen 317 FGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN--- 390 (776)
T ss_pred HHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc---
Confidence 99998642 5677777776653 111111 1111235888899988765543 3456788999999998865
Q ss_pred cHHHHHHHHHhCCCCceEEEEEccCCcc-H--------------------------------------------------
Q 014314 208 MRRDVQEIFKMTPHDKQVMMFSATLSKE-I-------------------------------------------------- 236 (427)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~~-~-------------------------------------------------- 236 (427)
....+...+..+. ..+.|++|+|+-.+ +
T Consensus 391 ~~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 391 SDSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred hhhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 2223333333333 34568888985211 0
Q ss_pred -HHHHHHh------------cCCCeEEEE--cCCcc----------c---------------------cccce-------
Q 014314 237 -RPVCKKF------------MQDPMEIYV--DDEAK----------L---------------------TLHGL------- 263 (427)
Q Consensus 237 -~~~~~~~------------~~~~~~~~~--~~~~~----------~---------------------~~~~~------- 263 (427)
..+...+ +.....+.+ .+... . ..+.+
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 0011111 110000000 00000 0 00000
Q ss_pred ------------------EEEEEEechhhHHHHHHHHHHhc---CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCC
Q 014314 264 ------------------VQHYIKLSELEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (427)
Q Consensus 264 ------------------~~~~~~~~~~~~~~~l~~~l~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~ 322 (427)
...........+...+..++... ...++.+..+.....+.+.+.++-.|+.++.+||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 00000011122334444444322 223455555666677777777777899999999999
Q ss_pred CHHHHHHHHHhhhcCCC--c-EEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEE
Q 014314 323 SQEERLTRYKGFKEGNK--R-ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (427)
Q Consensus 323 ~~~~r~~~~~~f~~~~~--~-vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 391 (427)
+..+|+.+++.|++... . +|.++.+.+.|||+-++..||.+|+.|+++.-.|.++|+.|.|++..|++|
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999985433 3 566889999999999999999999999999999999999999998777654
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.7e-21 Score=187.80 Aligned_cols=315 Identities=17% Similarity=0.177 Sum_probs=212.2
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
+|+++|-..--.+ .+.-+..+.||+|||+++.+|++.....+. .+-|++|+.-||.+-++++..+...+ |+++.
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~ 155 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFL-GLSVG 155 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEE
Confidence 6677776554443 455789999999999999999887766554 78999999999999999999999887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCCcccccC---------------
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES--------------- 205 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~------~~~~~~~~~iVvDEah~~~~~--------------- 205 (427)
++.++.+.......+. ++|+++|..-+ +++++.+ ..-...+.++||||+|.++=+
T Consensus 156 ~i~~~~~~~err~~Y~---~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~ 232 (913)
T PRK13103 156 IVTPFQPPEEKRAAYA---ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDS 232 (913)
T ss_pred EECCCCCHHHHHHHhc---CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccc
Confidence 9999887776666665 59999999876 2233322 112378899999999987611
Q ss_pred CCcHHHHHHHHHhC------------------------------------------------------------------
Q 014314 206 LDMRRDVQEIFKMT------------------------------------------------------------------ 219 (427)
Q Consensus 206 ~~~~~~~~~~~~~~------------------------------------------------------------------ 219 (427)
......+..+...+
T Consensus 233 ~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~ 312 (913)
T PRK13103 233 SKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYA 312 (913)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHH
Confidence 00000000000000
Q ss_pred --------CCCc-------------------------------------------------------------eEEEEEc
Q 014314 220 --------PHDK-------------------------------------------------------------QVMMFSA 230 (427)
Q Consensus 220 --------~~~~-------------------------------------------------------------~~v~~SA 230 (427)
.++. ++.+||+
T Consensus 313 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTG 392 (913)
T PRK13103 313 GLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTG 392 (913)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCC
Confidence 0000 4445555
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHH
Q 014314 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLL 308 (427)
Q Consensus 231 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L 308 (427)
|.......+..-+..+ .+.++...+..... ....+......|...+..-+... .+.++||-+.|++..+.+++.|
T Consensus 393 Ta~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D-~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L 469 (913)
T PRK13103 393 TADTEAFEFRQIYGLD--VVVIPPNKPLARKD-FNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLL 469 (913)
T ss_pred CCHHHHHHHHHHhCCC--EEECCCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHH
Confidence 5544433333322222 12222222111111 22223445556666655544432 5789999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHhhhcC-CCcEEEEeCCccccCCCC--------------------------------
Q 014314 309 VECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILVATDLVGRGIDIE-------------------------------- 355 (427)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gld~~-------------------------------- 355 (427)
.+.|++.-.+++.....+-..+- +.| ...|.|||++++||.|+.
T Consensus 470 ~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e 546 (913)
T PRK13103 470 KKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQ 546 (913)
T ss_pred HHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHH
Confidence 99999888888764433333332 334 345999999999999984
Q ss_pred -----CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 356 -----RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 356 -----~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+-=+||-...+.|..--.|-.||+||.|.+|.+..|++-.++
T Consensus 547 ~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 547 QVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 122688888899999999999999999999999999986443
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.88 E-value=1.2e-20 Score=168.59 Aligned_cols=326 Identities=14% Similarity=0.191 Sum_probs=214.8
Q ss_pred CCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 67 EHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
..+.|+|++.+...++ |..++++..+|.|||+.++..+-...... ..||+||. .+-..|.+.+.+|+.... .
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPA-svrftWa~al~r~lps~~--p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSIH--P 269 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhccccc--c
Confidence 3567999999988776 78899999999999998764443333332 67999995 677889999999986542 2
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceE
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (427)
+.++.++...- ....+ ...|.|.+++.+..+-. -+.-..+++||+||.|.+.+ .-....+.....+....++
T Consensus 270 i~vv~~~~D~~--~~~~t--~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~--sktkr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 270 IFVVDKSSDPL--PDVCT--SNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD--SKTKRTKAATDLLKVAKHV 341 (689)
T ss_pred eEEEecccCCc--ccccc--CCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc--cchhhhhhhhhHHHHhhhe
Confidence 33333332211 00011 13799999998865432 12334578999999998876 3333345555555556679
Q ss_pred EEEEccCCcc-------------------HHHHHHHhcC-CCeEEEEcCCcc--------------------------cc
Q 014314 226 MMFSATLSKE-------------------IRPVCKKFMQ-DPMEIYVDDEAK--------------------------LT 259 (427)
Q Consensus 226 v~~SAT~~~~-------------------~~~~~~~~~~-~~~~~~~~~~~~--------------------------~~ 259 (427)
|++|+|+.-. ...+...++. ....+..+-.+. .+
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLP 421 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLP 421 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999997311 1122222221 111111111100 01
Q ss_pred ccceEEEEEEec-------------------------------------hhhHHHHHHHHHHh------cCCCeEEEEEC
Q 014314 260 LHGLVQHYIKLS-------------------------------------ELEKNRKLNDLLDA------LDFNQVVIFVK 296 (427)
Q Consensus 260 ~~~~~~~~~~~~-------------------------------------~~~~~~~l~~~l~~------~~~~~~ivf~~ 296 (427)
.. .....+... ...|...+.+.+.. .++.|.+||+.
T Consensus 422 pK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 422 PK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred cc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 11 011111110 00112223333322 24578999999
Q ss_pred CchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC-CCcE-EEEeCCccccCCCCCCCEEEEcCCCCCchhhhh
Q 014314 297 SVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRI-LVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374 (427)
Q Consensus 297 ~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~v-lv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q 374 (427)
.....+.+...+.+.++....+.|..+...|....+.|+.+ +..| +++-.+++.|+++...+.|++...+|++.-++|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 99999999999999999999999999999999999999854 4555 446688999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEEe--cC-CccHHHHHHHHHHh
Q 014314 375 RVGRAGRFGTKGLAITFV--SS-ASDSDILNQVQARF 408 (427)
Q Consensus 375 ~~GR~~R~g~~g~~~~~~--~~-~~~~~~~~~~~~~~ 408 (427)
.-.|++|.|++..+.++| .. ..|...+..+.+++
T Consensus 581 AEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred chhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 999999999987765444 33 34455555666654
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=9.5e-21 Score=161.83 Aligned_cols=187 Identities=35% Similarity=0.514 Sum_probs=149.5
Q ss_pred CCCCCCchHHHHhHhhhhcC-CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 64 SGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.++..++++|.+++..+... +.+++.++||+|||.++..+++......... +++|++|++.++.|+...+..+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~-~~l~~~p~~~~~~~~~~~~~~~~~~~- 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGK-RVLVLVPTRELAEQWAEELKKLGPSL- 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCC-cEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 46778999999999999998 9999999999999999888888887765333 89999999999999999998877543
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
........++............+..+++++|++.+.............++++|+||+|.+.. ..+...+..+....++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD-GGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc-CCcHHHHHHHHHhCCcc
Confidence 22333444444434444445555459999999999998887776778899999999999975 36777888888888778
Q ss_pred ceEEEEEccCCccHHHHHHHhcCCCeEEEEc
Q 014314 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (427)
.+++++|||+++........+......+...
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8999999999988888888877766555444
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.4e-20 Score=177.90 Aligned_cols=316 Identities=19% Similarity=0.233 Sum_probs=208.9
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|--.--.+..| -+..+.||-|||+++.+|+......+. .|-|++...-||..=++++..+...+ |+
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fL-GL 148 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFL-GL 148 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHh-CC
Confidence 44 6788887776655555 589999999999999998876555444 57888888899998888888888887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCCcccccC------------
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES------------ 205 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~~------~~~~~~~~iVvDEah~~~~~------------ 205 (427)
+|++...+.........+. ++|.++|..-| +.+++.+. .-...+.+.||||+|.++=+
T Consensus 149 svG~i~~~~~~~~rr~aY~---~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 149 SVGINKANMDPNLKREAYA---CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred ceeeeCCCCChHHHHHhcc---CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 9999988777666655554 59999999876 33444321 22467889999999987611
Q ss_pred ---CCcHHHHHHHHHhCCC-------Cc----------------------------------------------------
Q 014314 206 ---LDMRRDVQEIFKMTPH-------DK---------------------------------------------------- 223 (427)
Q Consensus 206 ---~~~~~~~~~~~~~~~~-------~~---------------------------------------------------- 223 (427)
..+......+...+.. ..
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 0111112222222111 00
Q ss_pred ---------------------------------------------------------eEEEEEccCCccHHHHHHHhcCC
Q 014314 224 ---------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQD 246 (427)
Q Consensus 224 ---------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~~ 246 (427)
++.+||+|.......+..-+..+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 33334444333222222222111
Q ss_pred CeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHh-c-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCH
Q 014314 247 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA-L-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324 (427)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~ 324 (427)
.+.+ +..++.........+......|...+..-+.. + .+.++||.|.+++.++.+++.|.+.|++...+++.-.
T Consensus 386 --Vv~I-PTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 386 --VNVV-PTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred --EEEC-CCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 1111 11111111111112334455666655554442 2 5679999999999999999999999999999988633
Q ss_pred HHHHHHHHhhhcC-CCcEEEEeCCccccCCCCCCC--------EEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 325 EERLTRYKGFKEG-NKRILVATDLVGRGIDIERVN--------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 325 ~~r~~~~~~f~~~-~~~vlv~T~~~~~Gld~~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
+++..+-. .+| ...|.|||++++||.|+.--. |||....+.|..--.|-.||+||.|.+|.+..|++-.
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33322222 345 346999999999999986322 8999999999999999999999999999999999854
Q ss_pred c
Q 014314 396 S 396 (427)
Q Consensus 396 ~ 396 (427)
+
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 3
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=2.5e-19 Score=180.32 Aligned_cols=332 Identities=17% Similarity=0.195 Sum_probs=200.4
Q ss_pred CCCCCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH-HHHHHHHhc
Q 014314 65 GFEHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-CHEFERFST 139 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-~~~~~~~~~ 139 (427)
|| .+|+-|.+....+.. ++.+++.|+||+|||++|++|++.... +.+++|++||++|+.|+ .+.+..+..
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~----~~~vvI~t~T~~Lq~Ql~~~~i~~l~~ 317 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD----QRQIIVSVPTKILQDQIMAEEVKAIQE 317 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC----CCcEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 55 689999885544443 677999999999999999999888652 23899999999999999 466776666
Q ss_pred cCCCceEEEEEcCcchHHH-----------------------------------------------HHHHh---------
Q 014314 140 YLPDIKVAVFYGGVNIKIH-----------------------------------------------KDLLK--------- 163 (427)
Q Consensus 140 ~~~~~~~~~~~g~~~~~~~-----------------------------------------------~~~~~--------- 163 (427)
.. ++++..+.|+.++-.. +..+.
T Consensus 318 ~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 318 VF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred hc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 54 6667666665432100 00000
Q ss_pred --------------cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC------CCc-----HH--------
Q 014314 164 --------------NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDM-----RR-------- 210 (427)
Q Consensus 164 --------------~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~------~~~-----~~-------- 210 (427)
....+|+|++...|+..+.... .+...+++||||||.+.+. ..+ ..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 0115799999998888664433 3678999999999987531 000 00
Q ss_pred ------------------------------------------HH-----------HHHHHh-------------------
Q 014314 211 ------------------------------------------DV-----------QEIFKM------------------- 218 (427)
Q Consensus 211 ------------------------------------------~~-----------~~~~~~------------------- 218 (427)
.+ ..++..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 00 000000
Q ss_pred --------------CCCCceEEEEEccCC--ccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEE--ec------hhh
Q 014314 219 --------------TPHDKQVMMFSATLS--KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK--LS------ELE 274 (427)
Q Consensus 219 --------------~~~~~~~v~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~ 274 (427)
++....+|++|||++ +.. .+...+..+.......+ .........+.. .+ ...
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~~~~~~~~ 631 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE---KDKKQDQLVVVDQDMPLVTETSDEV 631 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC---CChHHccEEEeCCCCCCCCCCChHH
Confidence 011136789999996 222 23333322111110000 000100011110 11 111
Q ss_pred HHHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccC
Q 014314 275 KNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (427)
Q Consensus 275 ~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 352 (427)
....+...+.. ..+++++|+++|.+..+.+++.|....+.+ ...|... .+..+++.|++++..||++|..+.+|+
T Consensus 632 ~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 632 YAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCC
Confidence 11222222211 245899999999999999999997665444 3333222 245678999998888999999999999
Q ss_pred CCCC--CCEEEEcCCCC------------------------------CchhhhhcccccCCCCCccEEEEEecCC-ccHH
Q 014314 353 DIER--VNIVINYDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSD 399 (427)
Q Consensus 353 d~~~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~ 399 (427)
|+|+ ...||....|. -...+.|.+||.-|...+..+++++++. ....
T Consensus 709 D~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~ 788 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKS 788 (820)
T ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccH
Confidence 9974 55667666553 1234579999999987654456666643 3444
Q ss_pred HHHHHHHHhcc
Q 014314 400 ILNQVQARFEV 410 (427)
Q Consensus 400 ~~~~~~~~~~~ 410 (427)
|-+.+-+.++.
T Consensus 789 Yg~~~l~sLP~ 799 (820)
T PRK07246 789 YGKQILASLAE 799 (820)
T ss_pred HHHHHHHhCCC
Confidence 55555555543
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=5.4e-22 Score=187.99 Aligned_cols=328 Identities=16% Similarity=0.158 Sum_probs=196.2
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC----CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
.|+.+.. .++...+.-+.-..|+|+|+.|+.+...+ ...-+.+.+|+|||++.+- +.+.+.. .++|+++|
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~LvP 214 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLVP 214 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeecc
Confidence 4554433 35555666566678999999999999874 2255666799999998653 3444333 28999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchH------------------------HHHHHHhcCCCcEEEechHHHH
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK------------------------IHKDLLKNECPQIVVGTPGRIL 178 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~------------------------~~~~~~~~~~~~I~v~T~~~l~ 178 (427)
+.+|..|..+++..-... .++...++++.... .....-+...--|+++|++.+.
T Consensus 215 SIsLLsQTlrew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 215 SISLLSQTLREWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred hHHHHHHHHHHHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 999999998877654322 44555555543221 1111112223469999999999
Q ss_pred HHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC----CCceEEEEEccCCccHH---H-------------
Q 014314 179 ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP----HDKQVMMFSATLSKEIR---P------------- 238 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~----~~~~~v~~SAT~~~~~~---~------------- 238 (427)
..-......+..+++||+||||+..........-..+.+... +..+.+.||||+.-... .
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 887777778899999999999987642111111111111111 12345788999742211 1
Q ss_pred -----------------HHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHH------Hhc---------
Q 014314 239 -----------------VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL------DAL--------- 286 (427)
Q Consensus 239 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l------~~~--------- 286 (427)
..+.++.+...+...-........+..................++ ...
T Consensus 373 De~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~ 452 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKN 452 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccC
Confidence 111122222211111100000000000000000011111111111 111
Q ss_pred ------CCCeEEEEECCchhHHHHHHHHHh-------------CCCCeEE--ecCCCCHHHHHHHHH---hhhcCCCcEE
Q 014314 287 ------DFNQVVIFVKSVSRAAELNKLLVE-------------CNFPSIC--IHSGMSQEERLTRYK---GFKEGNKRIL 342 (427)
Q Consensus 287 ------~~~~~ivf~~~~~~~~~l~~~L~~-------------~~~~~~~--l~~~~~~~~r~~~~~---~f~~~~~~vl 342 (427)
+..+.|-||.+.++...+++.+.. .++.+.+ +.|.|+..+|...+. .|...+.+||
T Consensus 453 ~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl 532 (1518)
T COG4889 453 IKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKIL 532 (1518)
T ss_pred CcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheee
Confidence 124678999998888877766543 2344444 558899988855543 3456778888
Q ss_pred EEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC
Q 014314 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (427)
Q Consensus 343 v~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (427)
--...+++|+|+|.++.||++++..|+.+.+|.+||++|.
T Consensus 533 SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 533 SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999994
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.85 E-value=4.8e-18 Score=163.69 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=88.8
Q ss_pred HHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc----CCCcEEEEeCCccccCCC
Q 014314 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE----GNKRILVATDLVGRGIDI 354 (427)
Q Consensus 279 l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~----~~~~vlv~T~~~~~Gld~ 354 (427)
+..++.. .+++++|.+.+...++.+++.|...--..+.+.|..+ .+..+++.|++ |...||++|+.+.+|+|+
T Consensus 462 ~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 462 TAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 3444443 3478999999999999999999764223344555443 34567788876 467899999999999999
Q ss_pred --------CC--CCEEEEcCCCC-------------------------CchhhhhcccccCCCCCc--cEEEEEecCCcc
Q 014314 355 --------ER--VNIVINYDMPD-------------------------SADTYLHRVGRAGRFGTK--GLAITFVSSASD 397 (427)
Q Consensus 355 --------~~--~~~vi~~~~~~-------------------------s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~ 397 (427)
|+ +.+||+...|. ..-.+.|.+||.-|...+ ..++.++++.-.
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~ 618 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIH 618 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCC
Confidence 33 88899877763 123457999999998765 445666665555
Q ss_pred HHHHHHHHHH
Q 014314 398 SDILNQVQAR 407 (427)
Q Consensus 398 ~~~~~~~~~~ 407 (427)
..|-+.+.+.
T Consensus 619 ~~yg~~~~~~ 628 (636)
T TIGR03117 619 WPYMESWQES 628 (636)
T ss_pred chhHHHHHHH
Confidence 6666666554
No 136
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.4e-20 Score=171.00 Aligned_cols=361 Identities=15% Similarity=0.073 Sum_probs=236.7
Q ss_pred HHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 57 l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
+.+.+.++.-+....+|.++++.+.+|+++.+.-.|.+||++++.+.........+.. ..+++.|+.+++....+-+.-
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-NSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-ceecchhHHHHhhccCCceEE
Confidence 3344455555678899999999999999999999999999999998887766554433 678999999998876543332
Q ss_pred HhccCCCceEEE--EEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC----CCCCCCccEEEEcCCcccccCCCcHH
Q 014314 137 FSTYLPDIKVAV--FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK----DLSLKNVRHFILDECDKMLESLDMRR 210 (427)
Q Consensus 137 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~----~~~~~~~~~iVvDEah~~~~~~~~~~ 210 (427)
.....|..+.++ .+.+.+ +.....+.....+++++.|+......-.+ ...+-...++++||+|.++. .+..
T Consensus 354 ~~~~I~~~K~A~V~~~D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~~~ 430 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLS-ETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF--PTKA 430 (1034)
T ss_pred EEEehhhhhcceeecccCCC-chhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec--chhh
Confidence 222222222222 222222 22333333333699999999886633222 22233456789999998875 3332
Q ss_pred H----HHHHHHh-----CCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEe---ch---hhH
Q 014314 211 D----VQEIFKM-----TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---SE---LEK 275 (427)
Q Consensus 211 ~----~~~~~~~-----~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~ 275 (427)
. +..+... ...+.|++-.+||+...++-....+..+...+............+.-+.... .. ..+
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhH
Confidence 2 2222221 1235788999999988776666655555555443332222111111111000 11 112
Q ss_pred HHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHHHh----CCC----CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEe
Q 014314 276 NRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVE----CNF----PSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345 (427)
Q Consensus 276 ~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~----~~~----~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T 345 (427)
..-...++.. ..+-++|.||.+++-|+.+....++ .+. .+..|.|+....+|..+....-.|+..-+|+|
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 2222233322 2457999999999999887554433 222 24457899999999999999999999999999
Q ss_pred CCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecC-CccHHHHHHHHHHhccccccCCcccCC
Q 014314 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS-ASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
++++.|+|+..++.|+++++|.|.+.+.|..|||||.+++..++.+... .-+..|+..-...+.....+|-.+..+
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N 667 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQN 667 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEeccc
Confidence 9999999999999999999999999999999999999988876655543 356666666666666666555555443
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=7.6e-19 Score=171.00 Aligned_cols=129 Identities=20% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|--+.-.+ .+.-+..+.||.|||+++.+|+.-....+. .|-|++++..||.+-++++..+...+ |+
T Consensus 74 G~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~---~VhVvT~NdyLA~RD~e~m~pvy~~L-GL 146 (870)
T CHL00122 74 GL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGK---GVHIVTVNDYLAKRDQEWMGQIYRFL-GL 146 (870)
T ss_pred CC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCC---ceEEEeCCHHHHHHHHHHHHHHHHHc-CC
Confidence 55 5778887664433 456899999999999999999865444333 78999999999999999999998888 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcCC------CCCCCccEEEEcCCcccc
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKD------LSLKNVRHFILDECDKML 203 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~-~~~~~~~------~~~~~~~~iVvDEah~~~ 203 (427)
+++++.++.+.......+. ++|+++|..-+- +.++.+. .-...+.+.||||+|.++
T Consensus 147 svg~i~~~~~~~err~aY~---~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNYL---KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHHhcC---CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999988887776666665 489999997552 3333221 124668899999999876
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=9.9e-20 Score=165.15 Aligned_cols=279 Identities=19% Similarity=0.242 Sum_probs=186.1
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (427)
-++-+|||.||||.- +++++...+ ..++.-|.|-||.++++.++.. |+.+..++|......... .
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~---~ 257 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN---G 257 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC---C
Confidence 366789999999965 455555544 5699999999999999998876 788888888543221111 1
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhc
Q 014314 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (427)
Q Consensus 165 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (427)
..+..+-||-++.. --..+++.|+||++.|.+...-..-...++........+++= +.+.++++..+
T Consensus 258 ~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV~~i~ 324 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLVRKIL 324 (700)
T ss_pred CcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHHHHHH
Confidence 22467778877653 224678999999999887422223334444444444444421 23344544443
Q ss_pred C---CCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCC-eEEecC
Q 014314 245 Q---DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHS 320 (427)
Q Consensus 245 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~l~~ 320 (427)
. +...+ ..|.......-.+.+..-+.++.++-+|| |-+++....+...+.+.|.. +..++|
T Consensus 325 k~TGd~vev--------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 325 KMTGDDVEV--------------REYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred hhcCCeeEE--------------EeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEec
Confidence 2 22221 12222222211223333344555555544 44678888898899888665 999999
Q ss_pred CCCHHHHHHHHHhhhc--CCCcEEEEeCCccccCCCCCCCEEEEcCCC---------CCchhhhhcccccCCCCC---cc
Q 014314 321 GMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDMP---------DSADTYLHRVGRAGRFGT---KG 386 (427)
Q Consensus 321 ~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~g~---~g 386 (427)
++|++.|.+.-..|++ ++.+|||||+++++|+|+ +++-||+++.- -+..+..|.+|||||.|. .|
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999986 899999999999999999 78888888754 367788999999999873 57
Q ss_pred EEEEEecCCccHHHHHHHHHHhcccc
Q 014314 387 LAITFVSSASDSDILNQVQARFEVDI 412 (427)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (427)
.+..+... -+..+++.++...
T Consensus 469 ~vTtl~~e-----DL~~L~~~l~~p~ 489 (700)
T KOG0953|consen 469 EVTTLHSE-----DLKLLKRILKRPV 489 (700)
T ss_pred eEEEeeHh-----hHHHHHHHHhCCc
Confidence 77777653 2445555554443
No 139
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.83 E-value=5.2e-19 Score=158.29 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=101.9
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC-Cc-EEEEeCCccccCCCCCCCEEEEcC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KR-ILVATDLVGRGIDIERVNIVINYD 364 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gld~~~~~~vi~~~ 364 (427)
..-+.|||.+.....+.+.-.|.+.|+.++.+-|+|++..|...++.|.+.- +. +|++-.+.+..+|+..+.+|+.+|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 3457899999999999999999999999999999999999999999998753 33 466779999999999999999999
Q ss_pred CCCCchhhhhcccccCCCCC--ccEEEEEecCCccHHHHHHHHHH
Q 014314 365 MPDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~ 407 (427)
+.|+++.-.|...|.+|.|+ +-.++.|+-...-...+-.++++
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 99999999999999999996 56677777655444444444443
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=6.5e-18 Score=173.33 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=90.2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCC--CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC--CCEEEE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER--VNIVIN 362 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~--~~~vi~ 362 (427)
.+++++|+++|.+..+.+++.|..... ....+.-+++...|..+++.|++++..||++|....+|+|+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999976432 1223333444456788999999888889999999999999997 578888
Q ss_pred cCCCC------------------------------CchhhhhcccccCCCCCccEEEEEecCC-ccHHHHHHHHHHhc
Q 014314 363 YDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 409 (427)
Q Consensus 363 ~~~~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 409 (427)
...|. ....+.|.+||.-|..++..+++++++. ....|-+.+-+.++
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 77664 1223479999999987665566666654 44555555655544
No 141
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.83 E-value=4.2e-19 Score=172.63 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC--CcEEEEeCCccc
Q 014314 275 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN--KRILVATDLVGR 350 (427)
Q Consensus 275 ~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~ 350 (427)
|...|.-+|.++ .++++|||+...+..+.+..+|..+|+..+.+.|...-++|+..++.|+.+. +.+|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 445566666554 5689999999999999999999999999999999999999999999998764 356779999999
Q ss_pred cCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccE--EEEEecC
Q 014314 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL--AITFVSS 394 (427)
Q Consensus 351 Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~ 394 (427)
|+|+-+++.||+||..|++..-.|.-.|++|.|+... .+.|++.
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 9999999999999999999999999999999987655 4555654
No 142
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=2.3e-19 Score=142.25 Aligned_cols=118 Identities=45% Similarity=0.634 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhcC--CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcccc
Q 014314 274 EKNRKLNDLLDALD--FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351 (427)
Q Consensus 274 ~~~~~l~~~l~~~~--~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 351 (427)
.|...+..++.... ++++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777777663 7899999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEE
Q 014314 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (427)
Q Consensus 352 ld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 391 (427)
+|+|++++||++++|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 143
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.3e-19 Score=174.50 Aligned_cols=317 Identities=18% Similarity=0.198 Sum_probs=207.1
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.+.+||...+.++.. +-+.+++.+||.|||.+.+..+...+........-+|++|+..|.+ |..+|..|. |.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWa---PS 469 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWA---PS 469 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccc---cc
Confidence 789999999998886 2348999999999998765544444433332336799999998866 666676665 66
Q ss_pred ceEEEEEcCcchH-HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 144 IKVAVFYGGVNIK-IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 144 ~~~~~~~g~~~~~-~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
+....+.|..... ........+.++|+++|++.+.. .+..+.--++.++||||.|+|.+. ...+...+.-.-..
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa---~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA---ICKLTDTLNTHYRA 544 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch---hhHHHHHhhccccc
Confidence 7777777754332 12223344668999999998865 111222335678999999999742 11111111111111
Q ss_pred ceEEEEEccCCcc-------------------------------------------------------------------
Q 014314 223 KQVMMFSATLSKE------------------------------------------------------------------- 235 (427)
Q Consensus 223 ~~~v~~SAT~~~~------------------------------------------------------------------- 235 (427)
...+++|+|+-.+
T Consensus 545 q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 545 QRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 2223344442100
Q ss_pred --------HHHHHH-----------HhcCCCeEEEEcC-Ccc---cc-------------ccc----e----EEEE---E
Q 014314 236 --------IRPVCK-----------KFMQDPMEIYVDD-EAK---LT-------------LHG----L----VQHY---I 268 (427)
Q Consensus 236 --------~~~~~~-----------~~~~~~~~~~~~~-~~~---~~-------------~~~----~----~~~~---~ 268 (427)
+...++ ..+.+...+.++. ... .. .+. + ..++ .
T Consensus 625 VE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~d 704 (1157)
T KOG0386|consen 625 VEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKD 704 (1157)
T ss_pred HhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhH
Confidence 000000 0000000000000 000 00 000 0 0000 1
Q ss_pred EechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCC---cEEE
Q 014314 269 KLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK---RILV 343 (427)
Q Consensus 269 ~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~---~vlv 343 (427)
.+....|...+..++.++ -+++++.||........+..+|.-.++....+.|.+..++|...++.|..... .+|.
T Consensus 705 L~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fll 784 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLL 784 (1157)
T ss_pred HHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeee
Confidence 122345667777777665 46899999999999999999999999999999999999999999999986443 4678
Q ss_pred EeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEec
Q 014314 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
+|.+.+.|+|+..++.||.||..|++....|+..||+|.|+...+-++.-
T Consensus 785 stragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 785 STRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred eecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 99999999999999999999999999999999999999998776665543
No 144
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.9e-17 Score=159.78 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=98.6
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
+|+++|-..--.+ .+.-+..+.||-|||+++.+|+......+. .+-||+++.-||..-++++..+...+ |++|+
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~L-GLtvg 158 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFL-GLSVG 158 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHh-CCeEE
Confidence 5677776654444 455899999999999999999887766555 68999999999999999999988887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhc------CCCCCCCccEEEEcCCcccc
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARD------KDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~------~~~~~~~~~~iVvDEah~~~ 203 (427)
++.++.........+. ++|+++|...| ++.++. .......+.+.||||+|.++
T Consensus 159 ~i~~~~~~~err~aY~---~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 159 LIQQDMSPEERKKNYA---CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EECCCCChHHHHHhcC---CCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9988777665555553 59999999877 222221 22335778899999999876
No 145
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.79 E-value=6.8e-19 Score=163.69 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCc-EEEEeCCccc
Q 014314 274 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR-ILVATDLVGR 350 (427)
Q Consensus 274 ~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~-vlv~T~~~~~ 350 (427)
.|...+..++..+ .++++++|++..+....+.++|..+++....+.|.....+|..++..|+...+- +|++|.+.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 3445566666655 568999999999999999999999999999999999999999999999986654 4779999999
Q ss_pred cCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccE--EEEEecCC
Q 014314 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL--AITFVSSA 395 (427)
Q Consensus 351 Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~ 395 (427)
|+|+..++.||+|+..|++.--.|.+.||+|.|+... ++.++...
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999998765 44444433
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.79 E-value=2.7e-19 Score=127.42 Aligned_cols=78 Identities=45% Similarity=0.729 Sum_probs=75.6
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCC
Q 014314 306 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383 (427)
Q Consensus 306 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (427)
+.|+..++++..+||++++.+|..+++.|++++..|||||+++++|+|+|++++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=5.7e-17 Score=159.57 Aligned_cols=313 Identities=16% Similarity=0.195 Sum_probs=209.1
Q ss_pred CCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 68 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
...|+|.++++.+.+ +.++++.+|+|||||.++-++++. .....++++++|.-+.+..++..+.+-.+...|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 458999999999998 455999999999999998888877 233449999999999988888777654444468899
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCc----HHHHHHHHHhCCCC
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM----RRDVQEIFKMTPHD 222 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~----~~~~~~~~~~~~~~ 222 (427)
+.++|..+.... .+.. .+|+++||++|..+. ..+.+++.|.||+|.+.+..+- .-.+..+...+.+.
T Consensus 1219 ~~l~ge~s~~lk--l~~~--~~vii~tpe~~d~lq-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK--LLQK--GQVIISTPEQWDLLQ-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchH--Hhhh--cceEEechhHHHHHh-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhh
Confidence 998887665432 2223 389999999998762 6678899999999988653221 01155666667778
Q ss_pred ceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEe-chhhH-----HHHHHHHHH-hcCCCeEEEEE
Q 014314 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEK-----NRKLNDLLD-ALDFNQVVIFV 295 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~l~~~l~-~~~~~~~ivf~ 295 (427)
.+++.+|..+.+. +++ ........+...+...+.+..+.-+.+.. ..... ......+.+ ...+++.+||+
T Consensus 1290 ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1290 IRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eeEEEeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 8899999887754 333 11222223333333333222222222211 11111 111222222 23568999999
Q ss_pred CCchhHHHHHHHHHhC----------------------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCC
Q 014314 296 KSVSRAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (427)
Q Consensus 296 ~~~~~~~~l~~~L~~~----------------------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 353 (427)
++++.|..++..|-.. ..+...=|.+++..+...+-..|..|.+.|+|.... ..|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 9999998886654321 111222288899999888889999999999998876 77776
Q ss_pred CCCCCEEEEcC-----------CCCCchhhhhcccccCCCCCccEEEEEecCCccHHHH
Q 014314 354 IERVNIVINYD-----------MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401 (427)
Q Consensus 354 ~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 401 (427)
.. .+.||..+ .+.+.....|+.|+|.|+ |.|+++.+..+.+-|-
T Consensus 1446 ~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yyk 1500 (1674)
T KOG0951|consen 1446 LK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYK 1500 (1674)
T ss_pred cc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHH
Confidence 64 34444322 344678899999999994 5899999865444433
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=3.7e-17 Score=131.42 Aligned_cols=144 Identities=37% Similarity=0.486 Sum_probs=107.3
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (427)
+++++.++||+|||.+++..+........ ..+++|++|++.++.|+.+.+..+... +..+..+.+............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhc
Confidence 36899999999999998888777765532 238999999999999999988887643 467777777655544443333
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccC
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (427)
. ..+|+++|++.+.............++++|+||+|.+.. ..................+++++|||+
T Consensus 78 ~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 G-KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN-QGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred C-CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh-cchHHHHHHHHhhCCccceEEEEeccC
Confidence 3 369999999999987776655567789999999999876 333332223344456678899999996
No 149
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=7.2e-17 Score=150.39 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=98.2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh--cCCCcE-EEEeCCccccCCCCCCCEEEEc
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK--EGNKRI-LVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~--~~~~~v-lv~T~~~~~Gld~~~~~~vi~~ 363 (427)
...+++|...-......+...|++.|.....+||.....+|+.+++.|. +|..+| |++-.+.+.|||+-+.+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 3467777777777788888999999999999999999999999999996 343455 5566889999999999999999
Q ss_pred CCCCCchhhhhcccccCCCCCccEEE--EEecCCccHHHHHHHHH
Q 014314 364 DMPDSADTYLHRVGRAGRFGTKGLAI--TFVSSASDSDILNQVQA 406 (427)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~~~~~~~~~~~~ 406 (427)
|+-|+++--.|...|+.|.|++..++ .|+..+...+.+..+++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQd 869 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQD 869 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHH
Confidence 99999999999999999999877665 44555555555555544
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=9.8e-16 Score=153.86 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHhhhcCCC-cEEEEeCCccccCCCC
Q 014314 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIE 355 (427)
Q Consensus 278 ~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~Gld~~ 355 (427)
.+..++...+ ++++||++|...++.+.+.+...... ....+|..+.. ..++.|.++.- -++|+|..+++|+|+|
T Consensus 470 ~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 3444444444 59999999999999999999986552 44455554433 66777876544 7999999999999999
Q ss_pred C--CCEEEEcCCCC------------------------------CchhhhhcccccCCCCCccEEEEEecCC-ccHHHHH
Q 014314 356 R--VNIVINYDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILN 402 (427)
Q Consensus 356 ~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~ 402 (427)
+ ++.||..+.|. .+..+.|.+||+-|.-.+..++++++.. ....+-+
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~ 625 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGK 625 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHH
Confidence 7 57788888764 2345689999999976666666666653 2222444
Q ss_pred HHHHHhcc
Q 014314 403 QVQARFEV 410 (427)
Q Consensus 403 ~~~~~~~~ 410 (427)
.+-+.+..
T Consensus 626 ~l~~~l~~ 633 (654)
T COG1199 626 LLLDSLPP 633 (654)
T ss_pred HHHHhCCC
Confidence 44444433
No 151
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.73 E-value=3.9e-17 Score=137.54 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=102.6
Q ss_pred CCchHHHHhHhhhhc-------CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhcc
Q 014314 68 HPSEVQHECIPQAIL-------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (427)
.|+++|.+++..+.. .+.+++.+|||||||.+++..+..... ++++++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 579999999999995 578999999999999987755555544 8999999999999999999766543
Q ss_pred CCCceE---------EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC-----------CCCCCccEEEEcCCc
Q 014314 141 LPDIKV---------AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-----------LSLKNVRHFILDECD 200 (427)
Q Consensus 141 ~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~-----------~~~~~~~~iVvDEah 200 (427)
...... .....................+++++|.+.+........ .....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 211000 000111111112223334446899999999988664321 223567899999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (427)
.+... ..+..+.. .....+++|||||++
T Consensus 157 ~~~~~----~~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 157 HYPSD----SSYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp CTHHH----HHHHHHHH--SSCCEEEEEESS-S-
T ss_pred hcCCH----HHHHHHHc--CCCCeEEEEEeCccC
Confidence 77651 11444444 456679999999863
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7.5e-15 Score=147.53 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCCCCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 65 GFEHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
.|..++|.|.+.+..+.. ++++++.+|||+|||++.+.+++......+...++++++.|..-..|..+++++..
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 566679999888776664 78899999999999999999999876654444589999999999999999998853
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.70 E-value=4.3e-14 Score=140.94 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=82.5
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhh----cCCCcEEEEeCCccccCCCCC--CCEE
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER--VNIV 360 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~----~~~~~vlv~T~~~~~Gld~~~--~~~v 360 (427)
+++++||++|.+..+.+++.|... +.. +..+|.. .+..+++.|+ +++..||++|..+.+|+|+|+ +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 456899999999999999998753 333 3445532 4566776665 467779999999999999997 7889
Q ss_pred EEcCCCC------------------------------CchhhhhcccccCCCCCccEEEEEecCC-ccHHHHHHHHHHh
Q 014314 361 INYDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARF 408 (427)
Q Consensus 361 i~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~ 408 (427)
|....|. -...+.|.+||.-|...+..+++++++. ....|-+.+-+.+
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 9888664 1123469999999987665566666654 3344444444443
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.4e-15 Score=149.87 Aligned_cols=125 Identities=23% Similarity=0.281 Sum_probs=96.7
Q ss_pred chhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc
Q 014314 271 SELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 348 (427)
Q Consensus 271 ~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 348 (427)
....|...+..-+... .+.++||-+.|++..+.+++.|...|++.-.|++.....+...+-++=+. ..|.|||+++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCc
Confidence 4445665555444333 67899999999999999999999999998888876443343333333233 3599999999
Q ss_pred cccCCCC--------CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 349 GRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 349 ~~Gld~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+||-|+. +-=+||-...+.|..--.|-.||+||.|.+|.+..|++-.++
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999986 234788888999999999999999999999999999985544
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.70 E-value=2.7e-16 Score=153.67 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=99.9
Q ss_pred EEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---Hh
Q 014314 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LK 163 (427)
Q Consensus 87 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~ 163 (427)
+..+.+|||||.+|+-.+-..+..++ .+||++|...|+.|+...++..+. +..+..++++.+.....+. ..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHh
Confidence 33344699999998877766665544 799999999999999999987652 2578889998877655444 34
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC----CCcH-HHHHHHHHhCCCCceEEEEEccCCccHHH
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----LDMR-RDVQEIFKMTPHDKQVMMFSATLSKEIRP 238 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~----~~~~-~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 238 (427)
.+..+|+|+|...++ ..+.++++|||||=|.-+-. ..+. +.+.. ++....+..+|+.|||++-+...
T Consensus 238 ~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 238 RGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCCHHHHH
Confidence 576799999987665 47889999999999965421 1122 33333 33334567899999999866544
Q ss_pred H
Q 014314 239 V 239 (427)
Q Consensus 239 ~ 239 (427)
.
T Consensus 310 ~ 310 (665)
T PRK14873 310 L 310 (665)
T ss_pred H
Confidence 3
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.67 E-value=6.6e-15 Score=145.78 Aligned_cols=310 Identities=19% Similarity=0.187 Sum_probs=182.1
Q ss_pred CCchHHHHhHhhhhc--------CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 68 HPSEVQHECIPQAIL--------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~--------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
.-..+|-+|+..+.. |--++-.|.||+|||++= .-++..+.....+++..|-.-.|.|..|+-+.++.-.+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 446899999988775 112666899999999863 44555555555666888888889999999888887655
Q ss_pred cCCCceEEEEEcCcchHHHHH-------------------------------------------HHhc-------CCCcE
Q 014314 140 YLPDIKVAVFYGGVNIKIHKD-------------------------------------------LLKN-------ECPQI 169 (427)
Q Consensus 140 ~~~~~~~~~~~g~~~~~~~~~-------------------------------------------~~~~-------~~~~I 169 (427)
.. +-..+++.|+.......+ .+.+ -...|
T Consensus 487 L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 487 LS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 43 345556666543221110 0000 01359
Q ss_pred EEechHHHHHHHhcC---CCCCC----CccEEEEcCCcccccCCCcHHHHHHHHHhCC-CCceEEEEEccCCccHHHHHH
Q 014314 170 VVGTPGRILALARDK---DLSLK----NVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEIRPVCK 241 (427)
Q Consensus 170 ~v~T~~~l~~~~~~~---~~~~~----~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~ 241 (427)
+|||++.++...... ...+. .-+.||+||+|.+.. .....+..++.... .+.++++||||+|+.....+.
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~--~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP--EDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH--HHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 999999998865221 11111 134699999998754 22333444433211 246789999999988654322
Q ss_pred H-----------hcCC---CeEEE---EcCCccc---------------------------cccceEEEEEEechh----
Q 014314 242 K-----------FMQD---PMEIY---VDDEAKL---------------------------TLHGLVQHYIKLSEL---- 273 (427)
Q Consensus 242 ~-----------~~~~---~~~~~---~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 273 (427)
. ..+. +..+- ++..... ......-....+...
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 1 1121 11111 1110000 000001111112211
Q ss_pred -hHHHHHHHHH--------Hhc----C-CCe----EEEEECCchhHHHHHHHHHhC----C--CCeEEecCCCCHHHHHH
Q 014314 274 -EKNRKLNDLL--------DAL----D-FNQ----VVIFVKSVSRAAELNKLLVEC----N--FPSICIHSGMSQEERLT 329 (427)
Q Consensus 274 -~~~~~l~~~l--------~~~----~-~~~----~ivf~~~~~~~~~l~~~L~~~----~--~~~~~l~~~~~~~~r~~ 329 (427)
.....+...+ ..+ + .++ .+|-+++++.+-.+++.|-.. + +.+.+||+..+...|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 1111111111 111 1 122 477778888888888877654 2 45778999988777766
Q ss_pred HHHhh----------------------hc----CCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCC
Q 014314 330 RYKGF----------------------KE----GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383 (427)
Q Consensus 330 ~~~~f----------------------~~----~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (427)
+.+.. .+ +...|+|+|++++.|+|+ +.+.+|- -|.+..+.+|++||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 55332 11 466899999999999998 4665553 4567889999999999976
Q ss_pred C
Q 014314 384 T 384 (427)
Q Consensus 384 ~ 384 (427)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 4
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=3.2e-16 Score=112.95 Aligned_cols=81 Identities=46% Similarity=0.762 Sum_probs=77.1
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC
Q 014314 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (427)
Q Consensus 303 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (427)
.+++.|+..++.+..+||+++..+|..+++.|+++...+||+|+++++|+|+|.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 014314 383 G 383 (427)
Q Consensus 383 g 383 (427)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.60 E-value=9.4e-14 Score=134.31 Aligned_cols=288 Identities=13% Similarity=0.172 Sum_probs=180.6
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (427)
-.+|.+|+|||||.+..-++-..+.... .++|+|+.+++|+.+....++...- +++. .+...... .+..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~--~~VLvVShRrSL~~sL~~rf~~~~l--~gFv--~Y~d~~~~-----~i~~ 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPD--KSVLVVSHRRSLTKSLAERFKKAGL--SGFV--NYLDSDDY-----IIDG 119 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCC--CeEEEEEhHHHHHHHHHHHHhhcCC--Ccce--eeeccccc-----cccc
Confidence 3788999999999886554444433222 2899999999999999988875411 1222 11111111 1111
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH-------HHHHHHHhCCCCceEEEEEccCCccHH
Q 014314 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR-------DVQEIFKMTPHDKQVMMFSATLSKEIR 237 (427)
Q Consensus 165 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~SAT~~~~~~ 237 (427)
...+-+++..+.|.++. ...+.++++||+||+-..+.. -+.+ .+..+...+.....+|++-|++....-
T Consensus 120 ~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 12466777777776543 234667999999999877652 2222 223344556667889999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCcccc-ccceEEEEE----------------------------------EechhhHHHHHHHH
Q 014314 238 PVCKKFMQDPMEIYVDDEAKLT-LHGLVQHYI----------------------------------KLSELEKNRKLNDL 282 (427)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~~~~~~l~~~ 282 (427)
+++..+.+......+......+ .....-.+. .............+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 9988876543322221111100 000000000 00011223455555
Q ss_pred HHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCC--E
Q 014314 283 LDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN--I 359 (427)
Q Consensus 283 l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~--~ 359 (427)
+..+ .++++.||++|...++.+++..+..+.++..+++.-+..+. +. -++.+|++-|+++..|+++.... .
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceE
Confidence 5555 45678889999999999999999999999999887665532 22 35789999999999999996543 3
Q ss_pred EEEcCCC----CCchhhhhcccccCCCCCccEEEEEecC
Q 014314 360 VINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 360 vi~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
++-|=-| .++.+..|++||+-... ....+++++.
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 4433222 24556899999997764 4556666664
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=3.1e-14 Score=148.83 Aligned_cols=322 Identities=18% Similarity=0.207 Sum_probs=202.5
Q ss_pred CCCchHHHHhHhhhhc-----CCeEEEEecCCCCcchHHHHHhhhccCCCCC-CeEEEEEeCchHHHHHHHHHHHHHhcc
Q 014314 67 EHPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPG-QVTALVLCHTRELAYQICHEFERFSTY 140 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (427)
..++++|...++++.. +.+.+++..+|.|||+..+..+......... .++++++||+ +++.+|.+++.++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~- 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAP- 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCc-
Confidence 4688999999988662 6678999999999998766555432222221 2478999996 677889999977764
Q ss_pred CCCce-EEEEEcCcch----HHHHHHHhcC----CCcEEEechHHHHHHH-hcCCCCCCCccEEEEcCCcccccCCCcHH
Q 014314 141 LPDIK-VAVFYGGVNI----KIHKDLLKNE----CPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLDMRR 210 (427)
Q Consensus 141 ~~~~~-~~~~~g~~~~----~~~~~~~~~~----~~~I~v~T~~~l~~~~-~~~~~~~~~~~~iVvDEah~~~~~~~~~~ 210 (427)
.++ +...+|.... ......+... ..+++++|++.+.... ....+.-..+..+|+||+|.+.+. -..
T Consensus 415 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~--~s~ 490 (866)
T COG0553 415 --DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND--QSS 490 (866)
T ss_pred --cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh--hhH
Confidence 455 7777776641 2222222221 1589999999988732 122233456788999999997642 111
Q ss_pred HHHHHHHhCCCCceEEEEEccC-CccHHH--------------------------------------------------H
Q 014314 211 DVQEIFKMTPHDKQVMMFSATL-SKEIRP--------------------------------------------------V 239 (427)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~SAT~-~~~~~~--------------------------------------------------~ 239 (427)
....+. .+.... .+.+|+|| .+.+.. .
T Consensus 491 ~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 491 EGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 111111 111111 13444443 000000 0
Q ss_pred HHHh-cCCC-eE--EE------------Ec----------------------------CCc--------cc-------cc
Q 014314 240 CKKF-MQDP-ME--IY------------VD----------------------------DEA--------KL-------TL 260 (427)
Q Consensus 240 ~~~~-~~~~-~~--~~------------~~----------------------------~~~--------~~-------~~ 260 (427)
+..+ +... .. +. .. ... .. ..
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 0000 0000 00 00 00 000 00 00
Q ss_pred cceEEEEEEe-----------------------------chh-hHHHHHHHHH-Hh--cCCC--eEEEEECCchhHHHHH
Q 014314 261 HGLVQHYIKL-----------------------------SEL-EKNRKLNDLL-DA--LDFN--QVVIFVKSVSRAAELN 305 (427)
Q Consensus 261 ~~~~~~~~~~-----------------------------~~~-~~~~~l~~~l-~~--~~~~--~~ivf~~~~~~~~~l~ 305 (427)
..+..+.... ... .|...+.+++ .. ..+. ++++|++.......+.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 0000000000 001 4555666666 22 2345 8999999999999999
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC--CCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCC
Q 014314 306 KLLVECNFPSICIHSGMSQEERLTRYKGFKEG--NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383 (427)
Q Consensus 306 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (427)
..|...++....++|.++...|...++.|.++ ...+++++.+++.|+|+..+++||++|+.+++....|...|+.|.|
T Consensus 729 ~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 729 DYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred HHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhc
Confidence 99999998899999999999999999999986 4456778899999999999999999999999999999999999999
Q ss_pred CccEEE--EEecCCc
Q 014314 384 TKGLAI--TFVSSAS 396 (427)
Q Consensus 384 ~~g~~~--~~~~~~~ 396 (427)
++..+. .++..+.
T Consensus 809 Q~~~v~v~r~i~~~t 823 (866)
T COG0553 809 QKRPVKVYRLITRGT 823 (866)
T ss_pred CcceeEEEEeecCCc
Confidence 876655 4444443
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.52 E-value=1.2e-11 Score=113.82 Aligned_cols=229 Identities=17% Similarity=0.225 Sum_probs=160.2
Q ss_pred CcEEEechHHHHHHHhc------CCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCC-------------------
Q 014314 167 PQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH------------------- 221 (427)
Q Consensus 167 ~~I~v~T~~~l~~~~~~------~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~------------------- 221 (427)
.|||||+|=-|...+.. ....++++.++|+|.||.++- .-...+..++..+..
T Consensus 132 SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M--QNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 132 SDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM--QNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred CCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH--hhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 58999999888776663 233479999999999998874 222333333332221
Q ss_pred -----CceEEEEEccCCccHHHHHHHhcCCCe-EEEEcCCc------cccccceEEEEEEech-------hhHHHHHH-H
Q 014314 222 -----DKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEA------KLTLHGLVQHYIKLSE-------LEKNRKLN-D 281 (427)
Q Consensus 222 -----~~~~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~-------~~~~~~l~-~ 281 (427)
-+|+|++|+...+.+..+....+.+.. .+...... ......+.+.+..... ..+..... .
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 249999999999998888887544322 12211111 1222334444444322 12222221 1
Q ss_pred HHH----hcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc--ccCCCC
Q 014314 282 LLD----ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG--RGIDIE 355 (427)
Q Consensus 282 ~l~----~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gld~~ 355 (427)
++. ....+.+|||+++.-.--.+.++|++.++..+.+|.-.+..+-.+.-..|..|+..+|+.|.-+- +-..+.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 222 33457899999999999999999999999999999999999999999999999999999997644 567889
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCC------CccEEEEEecCCcc
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFG------TKGLAITFVSSASD 397 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g------~~g~~~~~~~~~~~ 397 (427)
++++||+|++|..+.-|...+.-.+... ....|.++++.-+.
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 9999999999999988877765554432 35778888875433
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.50 E-value=5e-12 Score=129.58 Aligned_cols=297 Identities=18% Similarity=0.165 Sum_probs=169.0
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (427)
+.++|+.-||||||++.+-.+-. +......+.+++|+-++.|-.|+.+.+..+...... .. ...+.....+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~---~~--~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN---DP--KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhh---cc--cccCHHHHHHHHh
Confidence 45999999999999875543333 333356669999999999999999999998754311 11 3445566666666
Q ss_pred cCCCcEEEechHHHHHHHhcC-CCCCC-CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHH-H
Q 014314 164 NECPQIVVGTPGRILALARDK-DLSLK-NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV-C 240 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~-~~~~~-~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~-~ 240 (427)
.+...|+|||.++|-...... ..... +--+||+||||+- .++..-..+...+++ ...+++|+||-..-... .
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS----Q~G~~~~~~~~~~~~-a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS----QYGELAKLLKKALKK-AIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc----cccHHHHHHHHHhcc-ceEEEeeCCccccccccch
Confidence 554589999999998876543 11122 2335888999954 233333333444443 67899999984321111 1
Q ss_pred HHhcCCCeEEEEcCCccccccceEEEEEEe-c--------h---------------h--------------------hHH
Q 014314 241 KKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-S--------E---------------L--------------------EKN 276 (427)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~---------------~--------------------~~~ 276 (427)
....+.....+...........+...|... . . . ...
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 222333333322221111111111111000 0 0 0 000
Q ss_pred H----HHHHHHH-hcCCCeEEEEECCchhHHHHHHHHHhCCC---------C-------eEE-----e--cCCCCHHHHH
Q 014314 277 R----KLNDLLD-ALDFNQVVIFVKSVSRAAELNKLLVECNF---------P-------SIC-----I--HSGMSQEERL 328 (427)
Q Consensus 277 ~----~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~L~~~~~---------~-------~~~-----l--~~~~~~~~r~ 328 (427)
. ....+.. ...+.++++.+.++..+..+.+....... . ... . |.. ....+.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHh
Confidence 0 0111111 12346888888888855555544333210 0 000 0 111 122223
Q ss_pred HHHHh--hhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC--C--CccEEEEEec
Q 014314 329 TRYKG--FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--G--TKGLAITFVS 393 (427)
Q Consensus 329 ~~~~~--f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g--~~g~~~~~~~ 393 (427)
..... ......++||.++++-+|+|.|.++++. +|-|.--..++|.+-|+.|. + ..|.++-|..
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 33344 3466789999999999999999888777 55566677899999999993 3 2355555554
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.47 E-value=6.4e-13 Score=101.80 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=79.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
|+-.+|-..+|+|||.-.+.-++.+....+. ++|||.|||.++..+.+.++. ..+..-+.... . ..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~--rvLvL~PTRvva~em~~aL~~-------~~~~~~t~~~~-~---~~- 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRL--RVLVLAPTRVVAEEMYEALKG-------LPVRFHTNARM-R---TH- 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTTT-------SSEEEESTTSS--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccC--eEEEecccHHHHHHHHHHHhc-------CCcccCceeee-c---cc-
Confidence 4557889999999998766655554433322 899999999999988877643 23222222111 1 11
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCC-CcHHHHHHHHHhCCCCceEEEEEccCCccH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL-DMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 236 (427)
.+..-|-++|+..+...+.. .....++++||+||+|...... -++..+... ... ....+|++|||+|...
T Consensus 70 -~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 -FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred -cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 12246889999998886655 5567899999999999653310 111222222 222 3357999999999654
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.47 E-value=3.8e-12 Score=122.85 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=95.6
Q ss_pred HHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhC----------------------CCCeEEecCCCCHHHHHHHHH
Q 014314 277 RKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYK 332 (427)
Q Consensus 277 ~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~----------------------~~~~~~l~~~~~~~~r~~~~~ 332 (427)
-.|.++|... -+.+.|||.++......+..+|... |.....+.|......|..+.+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 3455565543 4689999999999999888888641 345677899999999999999
Q ss_pred hhhcCC----CcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEE
Q 014314 333 GFKEGN----KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (427)
Q Consensus 333 ~f~~~~----~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 391 (427)
.|++-. .-.||+|.+.+.|+|+-.++-||+||..|+++--.|.+=|+.|.|+..-|++|
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 997531 24799999999999999999999999999999999999999999987766654
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.43 E-value=6.9e-12 Score=122.37 Aligned_cols=313 Identities=20% Similarity=0.237 Sum_probs=188.5
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
++..+|. +..+.....-+..+.||-|||+++.+|+.-....++ .+.+++..--|+.--..++..+..+. |++++
T Consensus 80 ~~~dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG 153 (822)
T COG0653 80 RHFDVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFL-GLSVG 153 (822)
T ss_pred ChhhHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHc-CCcee
Confidence 3444554 445555666889999999999999998877666554 56788888888888888888888887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcC------CCCCCCccEEEEcCCcccccC---------------
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLES--------------- 205 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~-~~~~~~------~~~~~~~~~iVvDEah~~~~~--------------- 205 (427)
+...+.....+...+. +||.++|..-|- +.++.+ ..-...+.+.|+||++.++-+
T Consensus 154 ~~~~~m~~~ek~~aY~---~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 154 VILAGMSPEEKRAAYA---CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eccCCCChHHHHHHHh---cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 9999888777777666 599999987651 122211 122346788999999987511
Q ss_pred CCcHHHHHHHHHhCCCC--------ceEEEEEc-----------------------------------------------
Q 014314 206 LDMRRDVQEIFKMTPHD--------KQVMMFSA----------------------------------------------- 230 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~--------~~~v~~SA----------------------------------------------- 230 (427)
......+..+...+... .+.+.+|-
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 11222233333222211 11111111
Q ss_pred --------------------------------------------------------------cCCccHHHHHHHhcCCCe
Q 014314 231 --------------------------------------------------------------TLSKEIRPVCKKFMQDPM 248 (427)
Q Consensus 231 --------------------------------------------------------------T~~~~~~~~~~~~~~~~~ 248 (427)
|.......+..-+..+
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~-- 388 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD-- 388 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc--
Confidence 1000000000000000
Q ss_pred EEEEcCCccccccceEEEEEEechhhHHHHHHHHH-Hh-cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHH
Q 014314 249 EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-DA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 326 (427)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~ 326 (427)
+...+........-....+......|...+..-+ .. ..+.++||-+.+++..+.+.+.|++.|++...+...-...+
T Consensus 389 -vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E 467 (822)
T COG0653 389 -VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE 467 (822)
T ss_pred -eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH
Confidence 0000000000000001111223334444443333 32 26789999999999999999999999999888887655333
Q ss_pred HHHHHHhhhcCCCcEEEEeCCccccCCCCCCC-----------EEEEcCCCCCchhhhhcccccCCCCCccEEEEEecC
Q 014314 327 RLTRYKGFKEGNKRILVATDLVGRGIDIERVN-----------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 327 r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
-..+ +..-...-|-|||+++++|-|+.--. +||-...-.|..--.|--||+||.|.+|....|++-
T Consensus 468 A~Ii--a~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 468 AEII--AQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred HHHH--hhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 3333 33222235889999999999984322 344444444555556999999999999998888863
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.40 E-value=2.3e-12 Score=117.41 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=89.7
Q ss_pred HHHHhHhhhhc-------------CCeEEEEecCCCCcchHHHHHhhhccCC--CCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 72 VQHECIPQAIL-------------GMDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 72 ~Q~~~i~~~~~-------------~~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
+|.+++..++. .+.++++.++|+|||...+..+...... ..+.-.+|||||. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 57777766643 3569999999999998766544422211 1111258999998 888999999999
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh---cCCCCCCCccEEEEcCCcccccCCCcHHHHH
Q 014314 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR---DKDLSLKNVRHFILDECDKMLESLDMRRDVQ 213 (427)
Q Consensus 137 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~---~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~ 213 (427)
+.... ..++..+.|.......... .....+++++|++.+..... ...+....+++||+||+|.+.+ ......
T Consensus 80 ~~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~---~~s~~~ 154 (299)
T PF00176_consen 80 WFDPD-SLRVIIYDGDSERRRLSKN-QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN---KDSKRY 154 (299)
T ss_dssp HSGT--TS-EEEESSSCHHHHTTSS-SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT---TTSHHH
T ss_pred ccccc-ccccccccccccccccccc-ccccceeeeccccccccccccccccccccccceeEEEeccccccc---cccccc
Confidence 97542 5677777666511111111 12336899999999981100 0011113488999999999954 222223
Q ss_pred HHHHhCCCCceEEEEEccCCcc
Q 014314 214 EIFKMTPHDKQVMMFSATLSKE 235 (427)
Q Consensus 214 ~~~~~~~~~~~~v~~SAT~~~~ 235 (427)
..+..+. ....+++||||-.+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SSS
T ss_pred ccccccc-cceEEeeccccccc
Confidence 3333344 56678899997543
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=4.1e-10 Score=102.82 Aligned_cols=327 Identities=16% Similarity=0.187 Sum_probs=199.3
Q ss_pred CCCchHHHHhHhhhhcCCeEEE-EecCCCCc--chHHHHHhhhccCC----------------------------CCCCe
Q 014314 67 EHPSEVQHECIPQAILGMDVIC-QAKSGMGK--TAVFVLSTLQQTEP----------------------------NPGQV 115 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li-~~~tGsGK--T~~~~~~~~~~~~~----------------------------~~~~~ 115 (427)
..+++.|.+.+..+.+-+|++. ....+.|+ +-.|.+.+++++.+ +-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4899999999999998888654 34445566 34556666654311 11347
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEE------------------------------EEcCcch--------HH
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAV------------------------------FYGGVNI--------KI 157 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~------------------------------~~g~~~~--------~~ 157 (427)
+||||||+|+.|-.+.+.+..++.....-+..+ +.|++.. ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 999999999999999998887743321111111 1111110 01
Q ss_pred HHHHH-hc-CCCcEEEechHHHHHHHhcCC------CCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC-------
Q 014314 158 HKDLL-KN-ECPQIVVGTPGRILALARDKD------LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD------- 222 (427)
Q Consensus 158 ~~~~~-~~-~~~~I~v~T~~~l~~~~~~~~------~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~------- 222 (427)
..-.+ .+ ...||+||+|=-|..++.... ..++++.++|||-||.++. .++ ..+..++..+...
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhH-HHHHHHHHHhhcCcccccCC
Confidence 11111 11 225899999987776666322 2368889999999998875 233 3334443332211
Q ss_pred -----------------ceEEEEEccCCccHHHHHHHhcCCCeE-EEEc---CC-----ccccccceEEEEEE----ech
Q 014314 223 -----------------KQVMMFSATLSKEIRPVCKKFMQDPME-IYVD---DE-----AKLTLHGLVQHYIK----LSE 272 (427)
Q Consensus 223 -----------------~~~v~~SAT~~~~~~~~~~~~~~~~~~-~~~~---~~-----~~~~~~~~~~~~~~----~~~ 272 (427)
+|++++|+--.+.+..+....+.+..- +... .. ...+.....+.+.. ...
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 267777776665555555544432211 1110 00 00111111111110 011
Q ss_pred hhHH-HHHHHHHHhcC---CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc
Q 014314 273 LEKN-RKLNDLLDALD---FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 348 (427)
Q Consensus 273 ~~~~-~~l~~~l~~~~---~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 348 (427)
..+. -.+..++-... ...+||+.++.-.--.+.+++++.++....+|.-.+...-.+.-+.|..|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 1222 23333433332 2468999999999999999999988887777766666666677778999999999999765
Q ss_pred c--ccCCCCCCCEEEEcCCCCCchhh---hhcccccCCCC----CccEEEEEecCC
Q 014314 349 G--RGIDIERVNIVINYDMPDSADTY---LHRVGRAGRFG----TKGLAITFVSSA 395 (427)
Q Consensus 349 ~--~Gld~~~~~~vi~~~~~~s~~~~---~Q~~GR~~R~g----~~g~~~~~~~~~ 395 (427)
. +-.++.+++.||+|.+|..+.-| +-+++|+.-.| ....|.++++.-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 4 67899999999999999998766 56666665433 345677777743
No 167
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.23 E-value=3.4e-09 Score=100.98 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=87.6
Q ss_pred CCeEEEEECCchhHHHHHHHHHhCC------------------CCeEEecCCCCHHHHHHHHHhhhcC--C-CcEEEEeC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVECN------------------FPSICIHSGMSQEERLTRYKGFKEG--N-KRILVATD 346 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~------------------~~~~~l~~~~~~~~r~~~~~~f~~~--~-~~vlv~T~ 346 (427)
+.++|||..+......+.+.|..+. ...+.+.|..+..+|.++++.|... - .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4578999999999998988887642 2344678888999999999999753 2 24788899
Q ss_pred CccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEe
Q 014314 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392 (427)
Q Consensus 347 ~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 392 (427)
+...|+|+-..+-++.++..|++.--.|.+-|+.|.|+..-|++|=
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999988888888999999999999999999999888777654
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.22 E-value=4.6e-11 Score=115.05 Aligned_cols=311 Identities=20% Similarity=0.226 Sum_probs=183.1
Q ss_pred HHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC--CCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 014314 73 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 150 (427)
Q Consensus 73 Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 150 (427)
-+..+..+..+.-++|.+.||+|||..+.--+++....+. ....+.+..|++..+..+.+++-+--...-+-.|++
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy-- 460 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY-- 460 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccc--
Confidence 3445555555666899999999999988888888765443 223567778999888888777653211100111111
Q ss_pred cCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 151 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 151 g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
+.......-+.. -.|.+||-+-+++.+... +..+.++|+||.|.......|...+.+=..........+++||
T Consensus 461 ---~vRf~Sa~prpy-g~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 461 ---NVRFDSATPRPY-GSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ---cccccccccccc-cceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 111111111111 268999999999877654 3466789999999876544554443333333333444555555
Q ss_pred cCCccHH--------------------HHH-HHhcCCCeEEEEcCC----------ccccccceEEEEE-Eec-------
Q 014314 231 TLSKEIR--------------------PVC-KKFMQDPMEIYVDDE----------AKLTLHGLVQHYI-KLS------- 271 (427)
Q Consensus 231 T~~~~~~--------------------~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~------- 271 (427)
|+..+.. .+. ..+......+..... ...........+- .+.
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 5433211 111 111111111110000 0000000000000 000
Q ss_pred ------hhhH---HHHHHHHHHh----cCCCeEEEEECCchhHHHHHHHHHhC-------CCCeEEecCCCCHHHHHHHH
Q 014314 272 ------ELEK---NRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRY 331 (427)
Q Consensus 272 ------~~~~---~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~ 331 (427)
..++ ...+..++.. .-.+-++||.+.....-.+...|... .+..+..|+..+..+..++.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 0000 1112222221 13467999999999988888887653 46788899999988888898
Q ss_pred HhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCC------------------CCchhhhhcccccCCCCCccEEEEEec
Q 014314 332 KGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------------------DSADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 332 ~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
+....|..+++++|.++...+.+.++..|++.+.. .|.....||.||+||. ++|.|..+++
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 88889999999999999999998887777753321 2666789999999996 6777777665
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.19 E-value=2.6e-10 Score=101.88 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCchHHHHhHh----hhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCC---CeEEEEEeCchHHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIP----QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 68 ~~~~~Q~~~i~----~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|+|.|.+.+. .+..|+++++.+|||+|||+++++|++..+...+. ..+++|.++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999444 44458889999999999999999999865443222 237999999999988887777665
No 170
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.19 E-value=2.6e-10 Score=101.88 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCchHHHHhHh----hhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCC---CeEEEEEeCchHHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIP----QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 68 ~~~~~Q~~~i~----~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|+|.|.+.+. .+..|+++++.+|||+|||+++++|++..+...+. ..+++|.++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999444 44458889999999999999999999865443222 237999999999988887777665
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.09 E-value=2.3e-09 Score=93.13 Aligned_cols=127 Identities=22% Similarity=0.266 Sum_probs=97.9
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.|++.|-.+.-.+..|+ ++...||-|||++..+++......+. .|-|++.+.-||..=++++..+...+ |+++.
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~ 150 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFL-GLSVG 150 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHT-T--EE
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHh-hhccc
Confidence 78999999888776664 99999999999998888777666544 78999999999999999999999988 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcCC-----C-CCCCccEEEEcCCcccc
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKD-----L-SLKNVRHFILDECDKML 203 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~-~~~~~~-----~-~~~~~~~iVvDEah~~~ 203 (427)
...++.+.......+. .+|+++|...+.- .++.+. . ..+.+.++||||+|.++
T Consensus 151 ~~~~~~~~~~r~~~Y~---~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 151 IITSDMSSEERREAYA---ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEETTTEHHHHHHHHH---SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cCccccCHHHHHHHHh---CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999888766555665 4899999988754 444321 1 14688999999999876
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.97 E-value=6.4e-11 Score=116.13 Aligned_cols=260 Identities=18% Similarity=0.203 Sum_probs=157.6
Q ss_pred CCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 68 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
...|.|.+.+..+.. ..++++-+|||+|||.++.++++..+...+. .++++++|.++|+..-.+.+...... +|+++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~-~g~k~ 1004 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL-PGIKV 1004 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc-CCcee
Confidence 456788887777666 5679999999999999999999888877666 49999999999988887777665443 48889
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCccEEEEcCCcccccCCCcHHHHHHHH-------H
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILDECDKMLESLDMRRDVQEIF-------K 217 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~--~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~-------~ 217 (427)
...+|+.... ...... ++++|+||+++....+.+ ...+.+++.+|+||.|.+.+ +..+.++.+. .
T Consensus 1005 ie~tgd~~pd--~~~v~~--~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~--~rgPVle~ivsr~n~~s~ 1078 (1230)
T KOG0952|consen 1005 IELTGDVTPD--VKAVRE--ADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE--DRGPVLEVIVSRMNYISS 1078 (1230)
T ss_pred EeccCccCCC--hhheec--CceEEcccccccCccccccchhhhccccceeecccccccC--CCcceEEEEeeccccCcc
Confidence 9888876544 222333 589999999999988744 45578999999999998876 3333222221 2
Q ss_pred hCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCc-ccccc----ceEE-EEEEechhhHHHHHHHHHHhcCCCeE
Q 014314 218 MTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA-KLTLH----GLVQ-HYIKLSELEKNRKLNDLLDALDFNQV 291 (427)
Q Consensus 218 ~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~ 291 (427)
......+.+++| |......++..++...+. ....+.. ..+.. ...- ++.........+.+..+....+..++
T Consensus 1079 ~t~~~vr~~gls-ta~~na~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~ 1156 (1230)
T KOG0952|consen 1079 QTEEPVRYLGLS-TALANANDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPV 1156 (1230)
T ss_pred ccCcchhhhhHh-hhhhccHHHHHHhCCCCc-CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCce
Confidence 223345566665 334444556555544433 1111111 10100 0000 11110111111334444444566899
Q ss_pred EEEECCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCC
Q 014314 292 VIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNK 339 (427)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 339 (427)
+||+.++.+...-+..|.. ..-+.-.++. +..+-+.++...++...
T Consensus 1157 lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1157 LIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNL 1206 (1230)
T ss_pred EEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccch
Confidence 9999998866555544432 2222223333 34455555555554443
No 173
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.95 E-value=4.9e-07 Score=85.87 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCC-------CeEEecCCCCHHHHHHHHHhhh----cCCCcEEEEe--
Q 014314 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF-------PSICIHSGMSQEERLTRYKGFK----EGNKRILVAT-- 345 (427)
Q Consensus 279 l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~-------~~~~l~~~~~~~~r~~~~~~f~----~~~~~vlv~T-- 345 (427)
+.++....+ +.+++|+++.+....+.+.+.+.|+ +.+.+-...+ -..+++.|. .|...+|++.
T Consensus 621 ~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVG 696 (821)
T KOG1133|consen 621 ISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVG 696 (821)
T ss_pred HHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEec
Confidence 334444445 8899999999999999999987653 2222222222 233444443 4555566655
Q ss_pred CCccccCCCCC--CCEEEEcCCCCC--------------------------------chhhhhcccccCCCCCccEEEEE
Q 014314 346 DLVGRGIDIER--VNIVINYDMPDS--------------------------------ADTYLHRVGRAGRFGTKGLAITF 391 (427)
Q Consensus 346 ~~~~~Gld~~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~g~~~~~ 391 (427)
.-+++|||+.+ +++|+.++.|.. +....|.+|||-|.-++-.++++
T Consensus 697 GKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~L 776 (821)
T KOG1133|consen 697 GKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYL 776 (821)
T ss_pred cccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEE
Confidence 77899999987 788998887741 11236999999999888888888
Q ss_pred ecCC
Q 014314 392 VSSA 395 (427)
Q Consensus 392 ~~~~ 395 (427)
++..
T Consensus 777 lD~R 780 (821)
T KOG1133|consen 777 LDKR 780 (821)
T ss_pred ehhh
Confidence 8754
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.88 E-value=6.8e-09 Score=101.66 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=90.6
Q ss_pred CeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCC-cE-EEEeCCccccCCCCCCCEEEEcCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK-RI-LVATDLVGRGIDIERVNIVINYDMP 366 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~-~v-lv~T~~~~~Gld~~~~~~vi~~~~~ 366 (427)
.+++||++....+..+...|...++....+.|.|+...|...+..|.++.. .| +++..+...|+|+-.+.+|+..|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 389999999999999999999889999999999999999999999985432 33 5577999999999999999999999
Q ss_pred CCchhhhhcccccCCCCCccEEEE
Q 014314 367 DSADTYLHRVGRAGRFGTKGLAIT 390 (427)
Q Consensus 367 ~s~~~~~Q~~GR~~R~g~~g~~~~ 390 (427)
+++...-|.+.|++|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998766554
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.87 E-value=1e-07 Score=92.49 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=58.7
Q ss_pred CCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC--CCccEEE----------EEecCCccHHHHHHH
Q 014314 337 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--GTKGLAI----------TFVSSASDSDILNQV 404 (427)
Q Consensus 337 ~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g~~g~~~----------~~~~~~~~~~~~~~~ 404 (427)
...+++++..++-+|+|-|+|-.++-+....|..+=+|.+||.-|. ++.|.-+ .++.+.+..+++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999993 3444322 344457777777777
Q ss_pred HHHhcc
Q 014314 405 QARFEV 410 (427)
Q Consensus 405 ~~~~~~ 410 (427)
.+..+.
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 765543
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.83 E-value=4.4e-08 Score=98.43 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=59.6
Q ss_pred CCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCC--CCc-------cEEEEEecCCccHHHHHHHHHHh
Q 014314 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--GTK-------GLAITFVSSASDSDILNQVQARF 408 (427)
Q Consensus 338 ~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g~~-------g~~~~~~~~~~~~~~~~~~~~~~ 408 (427)
..+++++.+++.+|+|.|++-.+.-+....|...-.|.+||.-|. .+. .....++.+.+..++...|++..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 568999999999999999999999999888999999999999983 122 22456666677888888888777
Q ss_pred ccc
Q 014314 409 EVD 411 (427)
Q Consensus 409 ~~~ 411 (427)
+-+
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.71 E-value=5.6e-07 Score=90.47 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=54.6
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc
Q 014314 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 168 ~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (427)
.|+++||..+..-+-.+.+++..+..|||||||++.. ......+.++++...+..-+.+|||.|..
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 7999999999987777888999999999999999987 45555666777777777778889988653
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.67 E-value=7.6e-08 Score=78.89 Aligned_cols=112 Identities=23% Similarity=0.247 Sum_probs=76.8
Q ss_pred HHHHhcCCCeEEEEECCchhHHHHHHHHHhCCC--CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC--CccccCCCCC
Q 014314 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATD--LVGRGIDIER 356 (427)
Q Consensus 281 ~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~~~Gld~~~ 356 (427)
++++.. +++++||++|.+..+.+.+.++.... ....+.. ...++..+++.|++++..||+++. .+.+|+|+|+
T Consensus 3 ~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 344444 49999999999999999999987632 1122222 245778889999999999999998 9999999997
Q ss_pred --CCEEEEcCCCCC------------------------------chhhhhcccccCCCCCccEEEEEecCC
Q 014314 357 --VNIVINYDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 357 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
++.||..+.|.. .....|.+||+-|..++-.++++++..
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 778998887741 112358899999987777777777654
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.64 E-value=1.7e-07 Score=82.03 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=49.0
Q ss_pred CCchHHHHhHhhhhcCCe-EEEEecCCCCcchHHHHHhhhcc------CCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQT------EPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~------~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
++++.|.+|+..++.... .+|.||+|+|||.+..- ++..+ .......++|+++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 99999999999965333 33333 1122233899999999999999888876
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.58 E-value=2.7e-07 Score=77.73 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=72.1
Q ss_pred CCchHHHHhHhhhhcCC--eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 68 HPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
+|++-|++++..++.+. -.+|.|+.|+|||.+ +..+...+...+ .++++++||...+..+.+.. ++.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~g--~~v~~~apT~~Aa~~L~~~~--------~~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAAG--KRVIGLAPTNKAAKELREKT--------GIE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHTT----EEEEESSHHHHHHHHHHH--------TS-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhCC--CeEEEECCcHHHHHHHHHhh--------Ccc
Confidence 47899999999998654 478899999999975 333444443332 38999999998877765442 112
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC----CCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCC
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~----~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~ 221 (427)
..|..+++....... ..+...++|||||+-.+.. ..+..++.....
T Consensus 70 -------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~-----~~~~~ll~~~~~ 119 (196)
T PF13604_consen 70 -------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS-----RQLARLLRLAKK 119 (196)
T ss_dssp -------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH-----HHHHHHHHHS-T
T ss_pred -------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH-----HHHHHHHHHHHh
Confidence 222222222111110 1155667999999996643 456666666665
Q ss_pred -CceEEEEEcc
Q 014314 222 -DKQVMMFSAT 231 (427)
Q Consensus 222 -~~~~v~~SAT 231 (427)
+.++|++-=+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 5666666543
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.53 E-value=3.6e-07 Score=86.29 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=66.4
Q ss_pred HHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 59 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 59 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
+.+...++..++.-|..|+.++++..-.+|+||+|+|||.+..-.+.+...... .++|+++|+...+.|+++.+.+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~--~~VLvcApSNiAVDqLaeKIh~t- 477 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA--GPVLVCAPSNIAVDQLAEKIHKT- 477 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcC--CceEEEcccchhHHHHHHHHHhc-
Confidence 344455777899999999999999999999999999999775443333333322 28999999999999998877664
Q ss_pred ccCCCceEEEEEc
Q 014314 139 TYLPDIKVAVFYG 151 (427)
Q Consensus 139 ~~~~~~~~~~~~g 151 (427)
+++|..++.
T Consensus 478 ----gLKVvRl~a 486 (935)
T KOG1802|consen 478 ----GLKVVRLCA 486 (935)
T ss_pred ----CceEeeeeh
Confidence 677776655
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.49 E-value=7.7e-07 Score=74.30 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=72.3
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
...+..|..++.++...+-+++.||.|||||+.++..+++.+..+.. -+++|+-|..+.... + ++.||-.-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-~kiii~Rp~v~~~~~----l----GflpG~~~ 73 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY-DKIIITRPPVEAGED----L----GFLPGDLE 73 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT------------SS-----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-cEEEEEecCCCCccc----c----ccCCCCHH
Confidence 45689999999999988889999999999999988888887766333 388888888754221 1 11122100
Q ss_pred EEEEcCcc----------hHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHH
Q 014314 147 AVFYGGVN----------IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216 (427)
Q Consensus 147 ~~~~g~~~----------~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~ 216 (427)
..+..-.. .....+.+... ..|-+.....+. . ..+. -.+||+|||+.+. ...+..++
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~-~~Ie~~~~~~iR----G--rt~~-~~~iIvDEaQN~t-----~~~~k~il 140 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQN-GKIEIEPLAFIR----G--RTFD-NAFIIVDEAQNLT-----PEELKMIL 140 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHT-TSEEEEEGGGGT----T----B--SEEEEE-SGGG-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhc-CeEEEEehhhhc----C--cccc-ceEEEEecccCCC-----HHHHHHHH
Confidence 00000000 00011111111 145555543331 1 1222 2689999999664 46778888
Q ss_pred HhCCCCceEEEEEcc
Q 014314 217 KMTPHDKQVMMFSAT 231 (427)
Q Consensus 217 ~~~~~~~~~v~~SAT 231 (427)
.+...+.+++++.-.
T Consensus 141 TR~g~~skii~~GD~ 155 (205)
T PF02562_consen 141 TRIGEGSKIIITGDP 155 (205)
T ss_dssp TTB-TT-EEEEEE--
T ss_pred cccCCCcEEEEecCc
Confidence 888888888876543
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.48 E-value=1.1e-06 Score=76.68 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=99.1
Q ss_pred CchHHHHhHhhhhc----------CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 69 PSEVQHECIPQAIL----------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~----------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
++..|-+++-..-+ ...+++-..||.||--...-.++..+..+.. ++|+++.+..|.....+.++.+.
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s~dL~~Da~RDl~DIG 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVSNDLKYDAERDLRDIG 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECChhhhhHHHHHHHHhC
Confidence 56777776654432 3448999999999997766556666655443 78999999999999888888775
Q ss_pred ccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC---CCC--------CC-ccEEEEcCCcccccCC
Q 014314 139 TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD---LSL--------KN-VRHFILDECDKMLESL 206 (427)
Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~---~~~--------~~-~~~iVvDEah~~~~~~ 206 (427)
.. .+.+..+.. .+.. +.... .-.|+++|+..|........ ..+ .+ =.+||+||+|...+..
T Consensus 116 ~~--~i~v~~l~~---~~~~-~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~ 188 (303)
T PF13872_consen 116 AD--NIPVHPLNK---FKYG-DIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLS 188 (303)
T ss_pred CC--cccceechh---hccC-cCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCC
Confidence 43 222222111 0000 00011 13799999999877653211 000 11 2369999999987632
Q ss_pred C-------cHHHHHHHHHhCCCCceEEEEEccCCccHH
Q 014314 207 D-------MRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237 (427)
Q Consensus 207 ~-------~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~ 237 (427)
. ....+..+...+++ .+++++|||-..+.+
T Consensus 189 ~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~ 225 (303)
T PF13872_consen 189 SGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPR 225 (303)
T ss_pred ccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCc
Confidence 2 22345556666654 459999999766543
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.41 E-value=1.5e-06 Score=73.09 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=84.4
Q ss_pred CCchHHHHhHhhhhc---CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 68 HPSEVQHECIPQAIL---GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
.+|+.|.+....+.+ +++.+.+.-+|.|||.+ ++|++.....++.. -+.+++| ++|..|..+.+..-.+..-+-
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-LvrviVp-k~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR-LVRVIVP-KALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc-EEEEEcC-HHHHHHHHHHHHHHHHHHhCC
Confidence 579999999999887 57899999999999988 67777766655543 6778888 579999999887544332233
Q ss_pred eEEEEE--cCcchH-HH---H----HHHhcCCCcEEEechHHHHHHHhcC-------CC-----------CCCCccEEEE
Q 014314 145 KVAVFY--GGVNIK-IH---K----DLLKNECPQIVVGTPGRILALARDK-------DL-----------SLKNVRHFIL 196 (427)
Q Consensus 145 ~~~~~~--g~~~~~-~~---~----~~~~~~~~~I~v~T~~~l~~~~~~~-------~~-----------~~~~~~~iVv 196 (427)
++..+. -..... .. . +..... ..|+++||+.++++.-.. .. -+.....=|+
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~-~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdil 178 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRS-GGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDIL 178 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHc-CCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEe
Confidence 333221 111111 11 1 111122 379999999887743211 10 0223344688
Q ss_pred cCCccccc
Q 014314 197 DECDKMLE 204 (427)
Q Consensus 197 DEah~~~~ 204 (427)
||+|.++.
T Consensus 179 DEsDe~L~ 186 (229)
T PF12340_consen 179 DESDEILS 186 (229)
T ss_pred ECchhccC
Confidence 99997764
No 185
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.38 E-value=4.9e-05 Score=70.29 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCCCchHHHHhHhh----hhcCCeEEEEecCCCCcchHHHHHhhhccCCCC-CCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 66 FEHPSEVQHECIPQ----AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 66 ~~~~~~~Q~~~i~~----~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
+...+|-|-+=+.. +-++.+.++.+|+|+|||.+.+..++....+.+ ...+.++..-|..-++....+++++
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 44556666544333 334678999999999999876655555433333 3346777777766666666666654
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.30 E-value=3.8e-06 Score=79.04 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=53.8
Q ss_pred CCCchHHHHhHhhhhcCCe-EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 67 EHPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
+.+.+-|+.|+......++ .+|.||+|+|||.+....+.+.+..+. ++|+++||...+..+.+++
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHh
Confidence 3678999999999888766 788999999999886666666555544 8999999999999998864
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.21 E-value=7.9e-06 Score=75.81 Aligned_cols=109 Identities=16% Similarity=0.245 Sum_probs=65.9
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (427)
-++|.|.+|||||+.++- ++..+.......+++++++...|...+...+..-.. +..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~~~-------------------- 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN--PKL-------------------- 59 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc--cch--------------------
Confidence 378999999999987544 334332122223789999999998877766654320 000
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCC------CcHHHHHHHHHh
Q 014314 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL------DMRRDVQEIFKM 218 (427)
Q Consensus 165 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~------~~~~~~~~~~~~ 218 (427)
....+..+..+.............+++|||||||++.... .....+..+++.
T Consensus 60 --~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 --KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233444444443322223455788999999999997621 223555566555
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.20 E-value=1.7e-05 Score=80.09 Aligned_cols=126 Identities=20% Similarity=0.200 Sum_probs=77.9
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
..+++-|++|+..+..++-++|.|++|+|||.+. -.++..+....+...+++++||-..+..+.+.. +...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~--------g~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT--------GLTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc--------CCcc
Confidence 4789999999999998888999999999999753 333333332221237888999987776543221 2111
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-----CCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCC
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-----KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-----~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~ 221 (427)
.|..+++..... ........++||+|||+.+.. ..+..++..++.
T Consensus 393 -------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~-----~~~~~Ll~~~~~ 442 (720)
T TIGR01448 393 -------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT-----WLALSLLAALPD 442 (720)
T ss_pred -------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH-----HHHHHHHHhCCC
Confidence 111111111000 001123567999999996643 345666777777
Q ss_pred CceEEEEEcc
Q 014314 222 DKQVMMFSAT 231 (427)
Q Consensus 222 ~~~~v~~SAT 231 (427)
..++|++.=+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8888876433
No 189
>PRK10536 hypothetical protein; Provisional
Probab=98.18 E-value=6e-05 Score=64.94 Aligned_cols=140 Identities=13% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
++...+..|...+.++..+..+++.||+|+|||+.+...++..+.... ..+++|.-|+.+... ..++.||-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge--------~LGfLPG~ 126 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADE--------DLGFLPGD 126 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchh--------hhCcCCCC
Confidence 556778999999998888888999999999999887776665553332 335666666654211 11111210
Q ss_pred e---E-----------EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH
Q 014314 145 K---V-----------AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (427)
Q Consensus 145 ~---~-----------~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~ 210 (427)
. . ..+.+. ......+......|-+.... +++... + .-.+||+|||+.+. ..
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~~---~~~~~~~~~~~~~Iei~~l~----ymRGrt--l-~~~~vIvDEaqn~~-----~~ 191 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLGA---SFMQYCLRPEIGKVEIAPFA----YMRGRT--F-ENAVVILDEAQNVT-----AA 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh---HHHHHHHHhccCcEEEecHH----HhcCCc--c-cCCEEEEechhcCC-----HH
Confidence 0 0 000010 00011111111245554432 223222 2 23689999999663 26
Q ss_pred HHHHHHHhCCCCceEEEE
Q 014314 211 DVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~ 228 (427)
.+..++..+..+.++|++
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 777788888888876655
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.18 E-value=1.9e-05 Score=77.49 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=85.5
Q ss_pred hHHHHhHhhhhcCCeEEEEecCCCCcchHHH--HHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEE
Q 014314 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFV--LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 148 (427)
Q Consensus 71 ~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~--~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 148 (427)
+.|+.|+..++.++-.+|.|++|+|||.+.. +.++.......+..++++.+||--.+..+.+.+....... ...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l---~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL---AAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc---ccc-
Confidence 7899999999999999999999999997532 2222222222123479999999988887776665432211 100
Q ss_pred EEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc------CCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 149 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~------~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
. ..... ..+-..|..+++..... ...+...+++|||||+-.+. ...+..+++.++..
T Consensus 224 -------~----~~~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd-----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -------E----ALIAA-LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD-----LPLMAKLLKALPPN 286 (586)
T ss_pred -------h----hhhhc-cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC-----HHHHHHHHHhcCCC
Confidence 0 00000 12234555555443211 11223357899999999553 34677778888888
Q ss_pred ceEEEEEc
Q 014314 223 KQVMMFSA 230 (427)
Q Consensus 223 ~~~v~~SA 230 (427)
.++|++.=
T Consensus 287 ~rlIlvGD 294 (586)
T TIGR01447 287 TKLILLGD 294 (586)
T ss_pred CEEEEECC
Confidence 88887643
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.17 E-value=1.5e-05 Score=78.42 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=85.7
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchHHH--HHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFV--LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~--~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.++|+.|+-..+.++-.+|.|++|+|||.+.. +..+..... ....++.+++||...+..+.+.+....... +..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~-~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQL-PLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhcc-ccc--
Confidence 48999999999998889999999999997632 222222221 123478899999998888877665433221 100
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh------cCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCC
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR------DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~------~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~ 221 (427)
. . .... ...-..|..+++.... .+..+.-.+++|||||+-.+. ...+..+++.+++
T Consensus 230 ---~----~-----~~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 ---D----E-----QKKR-IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-----LPMMARLIDALPP 291 (615)
T ss_pred ---h----h-----hhhc-CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----HHHHHHHHHhccc
Confidence 0 0 0000 0112344444443211 111123346899999999553 4667778888888
Q ss_pred CceEEEEEcc
Q 014314 222 DKQVMMFSAT 231 (427)
Q Consensus 222 ~~~~v~~SAT 231 (427)
..++|++.=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887543
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=98.15 E-value=6.4e-06 Score=57.23 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=39.4
Q ss_pred hHhhhhcCCe-EEEEecCCCCcchHHHHHhhhccC--CCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 76 CIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 76 ~i~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
++...+.+.. ++|.||+|||||...+-.+..... ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443344334 666999999999665544444442 222 338999999999999888777
No 193
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.01 E-value=4.6e-05 Score=60.12 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCC------CeEEecCCCCHHHHHHHHHhhhcCC-CcEEEEeCCccccCCCCC--CCEEEEcCCCC----
Q 014314 301 AAELNKLLVECNF------PSICIHSGMSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIER--VNIVINYDMPD---- 367 (427)
Q Consensus 301 ~~~l~~~L~~~~~------~~~~l~~~~~~~~r~~~~~~f~~~~-~~vlv~T~~~~~Gld~~~--~~~vi~~~~~~---- 367 (427)
.+.+...++..+. ....+..+....+...+++.|++.. ..||+++...++|+|+|+ +++||..+.|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3445555555442 2233344445556788899998654 369999988999999998 57888887663
Q ss_pred ---------------------------CchhhhhcccccCCCCCccEEEEEecC
Q 014314 368 ---------------------------SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 368 ---------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
......|.+||+-|..++-.++++++.
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 012346899999998766556666653
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.95 E-value=3.2e-05 Score=75.98 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=65.8
Q ss_pred CCeEEEEECCchhHHHHHHHHHhCC-------CCeEEecCCCCHHHHHHHHHhhhc--------CCCcEEEEeCCccccC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVECN-------FPSICIHSGMSQEERLTRYKGFKE--------GNKRILVATDLVGRGI 352 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~-------~~~~~l~~~~~~~~r~~~~~~f~~--------~~~~vlv~T~~~~~Gl 352 (427)
+..+++|.++....+.+...++..+ .+-..+- --+..+-.+++..|.+ |..-+.||-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 3559999999988777766655431 2222221 1123333344444432 2234556668899999
Q ss_pred CCCC--CCEEEEcCCCC--------------------------------------CchhhhhcccccCCCCCccEEEEEe
Q 014314 353 DIER--VNIVINYDMPD--------------------------------------SADTYLHRVGRAGRFGTKGLAITFV 392 (427)
Q Consensus 353 d~~~--~~~vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~ 392 (427)
|+.+ .+.||..+.|. ......|.+||+-|.-++-.+++++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 9976 67799888773 1123469999999987776667777
Q ss_pred cC
Q 014314 393 SS 394 (427)
Q Consensus 393 ~~ 394 (427)
+.
T Consensus 720 D~ 721 (945)
T KOG1132|consen 720 DD 721 (945)
T ss_pred ec
Confidence 64
No 195
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.93 E-value=5.1e-05 Score=59.99 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhCCC---CeEEecCCCCHHHHHHHHHhhhcCCC---cEEEEeCC--ccccCCCCC--CCEEEEcCCCC--
Q 014314 300 RAAELNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNK---RILVATDL--VGRGIDIER--VNIVINYDMPD-- 367 (427)
Q Consensus 300 ~~~~l~~~L~~~~~---~~~~l~~~~~~~~r~~~~~~f~~~~~---~vlv~T~~--~~~Gld~~~--~~~vi~~~~~~-- 367 (427)
..+.+++.++..+. ....+.......+...+++.|++... .||+++.. +++|+|+|+ +++||..+.|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665433 12222222223344677888876433 58888876 999999998 67899888773
Q ss_pred -----------------------------CchhhhhcccccCCCCCccEEEEEecC
Q 014314 368 -----------------------------SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 368 -----------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
......|.+||+-|..++-.++++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 112346999999998766666777654
No 196
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=7.3e-05 Score=70.44 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=74.3
Q ss_pred EEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhc-cCCCceEEEEEcCcchHHHHHH---Hh
Q 014314 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST-YLPDIKVAVFYGGVNIKIHKDL---LK 163 (427)
Q Consensus 88 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~---~~ 163 (427)
..++||||||++..-.++....++.+ .-|+.|............+..-.+ .+ =+.-.+..++..+...... -.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeeeeecccCcc
Confidence 35789999999866666665554433 567777776666655544421100 00 0000111122221111000 02
Q ss_pred cCCCcEEEechHHHHHHHhcCCC------CCCCccEE-EEcCCcccccC--------CCcHHHHHHH---HHhCCCCceE
Q 014314 164 NECPQIVVGTPGRILALARDKDL------SLKNVRHF-ILDECDKMLES--------LDMRRDVQEI---FKMTPHDKQV 225 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~------~~~~~~~i-VvDEah~~~~~--------~~~~~~~~~~---~~~~~~~~~~ 225 (427)
+....|.++|.+.|...+.+... ++.+.++| +-||||++... ......+... .....++.-+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 34468999999999886644321 24445554 45999998531 0111112211 1122233446
Q ss_pred EEEEccCCcc
Q 014314 226 MMFSATLSKE 235 (427)
Q Consensus 226 v~~SAT~~~~ 235 (427)
+.+|||.|.+
T Consensus 159 lef~at~~k~ 168 (812)
T COG3421 159 LEFSATIPKE 168 (812)
T ss_pred ehhhhcCCcc
Confidence 6789999844
No 197
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.85 E-value=8.7e-07 Score=86.16 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc---CCCcEEEEeCCcccc
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE---GNKRILVATDLVGRG 351 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~---~~~~vlv~T~~~~~G 351 (427)
.++++++|....+..+.+...+...+ ....+.|..+...|+..++.|+. ....+|.+|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 56899999999999999999999888 88889999999999999999983 345688899887765
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.85 E-value=0.00027 Score=71.81 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCchHHHHhHhhhhcC-CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 68 HPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
.+++-|+.|+..++.+ +-++|.|++|+|||.. +-.+...+... +.++++++||--.+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~--g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA--GYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC--CCeEEEEeCcHHHHHHH
Confidence 6899999999999874 5689999999999965 33333333322 23789999997665554
No 199
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.81 E-value=0.0001 Score=73.33 Aligned_cols=138 Identities=17% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCe-EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHH
Q 014314 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (427)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (427)
..+.|...+. -+..++.-|++|+..++..++ .+|.|-+|+|||.+....+-.....++ ++|+.+=|-..+..
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk---kVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK---KVLLTSYTHSAVDN 728 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC---eEEEEehhhHHHHH
Confidence 3455554443 344789999999999998766 789999999999764332222222222 78988888888777
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh----------------cCCCcEEEechHHHHHHHhcCCCCCCCccE
Q 014314 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK----------------NECPQIVVGTPGRILALARDKDLSLKNVRH 193 (427)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 193 (427)
+.-.++.+ ++....+-.+.....+.+.+. -+.+.|+.||=--+... .+..+.|++
T Consensus 729 ILiKL~~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~ 799 (1100)
T KOG1805|consen 729 ILIKLKGF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDY 799 (1100)
T ss_pred HHHHHhcc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCE
Confidence 76555443 333333222222222222111 02246777763222221 223456899
Q ss_pred EEEcCCccccc
Q 014314 194 FILDECDKMLE 204 (427)
Q Consensus 194 iVvDEah~~~~ 204 (427)
+|+|||-.+..
T Consensus 800 cIiDEASQI~l 810 (1100)
T KOG1805|consen 800 CIIDEASQILL 810 (1100)
T ss_pred EEEcccccccc
Confidence 99999998864
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.80 E-value=0.00029 Score=72.75 Aligned_cols=123 Identities=14% Similarity=0.083 Sum_probs=74.7
Q ss_pred CCchHHHHhHhhhhcCCe-EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
.|++-|.+++..++.+++ ++|.|+.|+|||++ +-.+...+...+ .+++.++||--.+..+.+. .++.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~G--~~V~~~ApTGkAA~~L~e~--------tGi~- 413 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAAG--YEVRGAALSGIAAENLEGG--------SGIA- 413 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHcC--CeEEEecCcHHHHHHHhhc--------cCcc-
Confidence 689999999999998654 78999999999975 333444333222 3789999997665544210 0221
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhC-CCCceE
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQV 225 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~~~~~~ 225 (427)
-.|..+|+.-.......+...++|||||+-.+.. ..+..+++.. ....++
T Consensus 414 ------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~~garv 464 (988)
T PRK13889 414 ------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT-----RQLERVLSHAADAGAKV 464 (988)
T ss_pred ------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH-----HHHHHHHHhhhhCCCEE
Confidence 1122222221112223456678999999996543 3444555433 456777
Q ss_pred EEEEcc
Q 014314 226 MMFSAT 231 (427)
Q Consensus 226 v~~SAT 231 (427)
|++.=+
T Consensus 465 VLVGD~ 470 (988)
T PRK13889 465 VLVGDP 470 (988)
T ss_pred EEECCH
Confidence 776543
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.76 E-value=7.5e-05 Score=66.43 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=88.2
Q ss_pred CCCCCchHHHHhHhhhhcCC--eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 65 GFEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
|+...+..|.-|+..++... -+.+.|+.|||||+.++.+.+.+....+...++++.=|+..+...+ ++.|
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI--------GfLP 296 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI--------GFLP 296 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc--------CcCC
Confidence 77777888999999888743 3788999999999998888888876666555888888887654322 2223
Q ss_pred Cce---EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCC----------ccEEEEcCCcccccCCCcH
Q 014314 143 DIK---VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN----------VRHFILDECDKMLESLDMR 209 (427)
Q Consensus 143 ~~~---~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~----------~~~iVvDEah~~~~~~~~~ 209 (427)
|.. ..-|.+. .....+.+.+ .-=++.+.+...+.+..+.+.. -.+||+|||+.+. .
T Consensus 297 G~eEeKm~PWmq~--i~DnLE~L~~----~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-----p 365 (436)
T COG1875 297 GTEEEKMGPWMQA--IFDNLEVLFS----PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-----P 365 (436)
T ss_pred CchhhhccchHHH--HHhHHHHHhc----ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-----H
Confidence 221 0001000 0011111111 1111233444444333332211 2469999999664 4
Q ss_pred HHHHHHHHhCCCCceEEEEE
Q 014314 210 RDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 210 ~~~~~~~~~~~~~~~~v~~S 229 (427)
..+..++.+...+.++|++.
T Consensus 366 heikTiltR~G~GsKIVl~g 385 (436)
T COG1875 366 HELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHhccCCCEEEEcC
Confidence 67888898888888777653
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.75 E-value=5.7e-05 Score=69.20 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=73.2
Q ss_pred CchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
+++-|.+++.. ..++++|.|+.|||||.+.+.-+...+... ....++|++++|+..+..+.+++....... ...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~-~~~-- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEE-QQE-- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHC-CHC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcc-ccc--
Confidence 57889999887 677899999999999998766555544433 233479999999999999999998865432 100
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcCCCCC-CCccEEEEcCCc
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSL-KNVRHFILDECD 200 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~-~~~~~~~~~-~~~~~iVvDEah 200 (427)
................+.|+|...+.. +++...... -.-.+-++|+..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 -----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred -----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000001111111113788999988866 333221111 112345666555
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.73 E-value=0.00052 Score=71.47 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 52 LLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
.+++..+......+ ..|++-|..++..+.. ++-.+|.|+.|+|||++ +-++...+...+ .+++.++||-..+..+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~G--~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAAG--YRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHcC--CeEEEEcCcHHHHHHH
Confidence 34455454444433 3689999999998865 45589999999999975 334444333322 2789999997766554
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH
Q 014314 131 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (427)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~ 210 (427)
.+. . ++... |..+|+.........+..-++|||||+..+.. .
T Consensus 442 ~e~----~----Gi~a~-------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~-----~ 483 (1102)
T PRK13826 442 EKE----A----GIQSR-------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS-----R 483 (1102)
T ss_pred HHh----h----CCCee-------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH-----H
Confidence 321 1 33221 22222111111223456677999999995533 4
Q ss_pred HHHHHHHhCC-CCceEEEEEcc
Q 014314 211 DVQEIFKMTP-HDKQVMMFSAT 231 (427)
Q Consensus 211 ~~~~~~~~~~-~~~~~v~~SAT 231 (427)
.+..+++... .+.++|++.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4445555543 46677776543
No 204
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.71 E-value=0.00012 Score=63.62 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=36.2
Q ss_pred CCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc
Q 014314 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 185 ~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (427)
....+.++++|+||||.|.. .-...+.+.....+....+++++.-+..
T Consensus 124 ~~~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChhh
Confidence 34567789999999999875 5566677777777777788888766543
No 205
>PRK04296 thymidine kinase; Provisional
Probab=97.61 E-value=0.00011 Score=61.76 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=24.7
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
.-.++.||+|+|||+..+-.+......+ .+++++-|.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~~ 39 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKPA 39 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEecc
Confidence 3468899999999987555444443332 277877663
No 206
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.59 E-value=0.00025 Score=72.56 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=93.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCC---------------CCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---------------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
|+.+++...+|.|||..-+...+-...+. ....-+|||+|. ++..||+.++...... ++++.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Confidence 56689999999999987665544322110 011257999995 7889999999987754 57888
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--------------C----CCC--ccEEEEcCCcccccCCC
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--------------S----LKN--VRHFILDECDKMLESLD 207 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~--------------~----~~~--~~~iVvDEah~~~~~~~ 207 (427)
.+.|-.+....... .--.+||+++|+..|...+.+... . +-. |=.|++|||+.+- .
T Consensus 451 ~Y~Girk~~~~~~~-el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve---s 526 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPF-ELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE---S 526 (1394)
T ss_pred EEechhhhcccCch-hhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc---c
Confidence 88775433211111 112269999999999775543211 0 101 1128999999663 3
Q ss_pred cHHHHHHHHHhCCCCceEEEEEccCCccHHH
Q 014314 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 238 (427)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 238 (427)
......++...++.. ..-++|+||-..+.+
T Consensus 527 ssS~~a~M~~rL~~i-n~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHAI-NRWCVTGTPIQKIDD 556 (1394)
T ss_pred hHHHHHHHHHHhhhh-ceeeecCCchhhhhh
Confidence 445556666666543 356789997554443
No 207
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.52 E-value=0.00034 Score=60.34 Aligned_cols=88 Identities=30% Similarity=0.422 Sum_probs=69.9
Q ss_pred CCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCc-chHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCC
Q 014314 111 NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV-NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLK 189 (427)
Q Consensus 111 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 189 (427)
..+.|.+|||+.+---|..+.+.++.+... +..++-++... ...++...+.+...+|.|+||+++..++....+.++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 345678999999887788888888777421 33555555543 667788888877789999999999999999999999
Q ss_pred CccEEEEcCCc
Q 014314 190 NVRHFILDECD 200 (427)
Q Consensus 190 ~~~~iVvDEah 200 (427)
++.+||+|--|
T Consensus 201 ~l~~ivlD~s~ 211 (252)
T PF14617_consen 201 NLKRIVLDWSY 211 (252)
T ss_pred cCeEEEEcCCc
Confidence 99999999876
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=97.51 E-value=0.00064 Score=61.87 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=40.3
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhc
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (427)
+.++|++|.+.++..+......+..+.+...+...++.++||...+....+..+.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 4578999999988644456667777777777777788889988776665555543
No 209
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.49 E-value=0.00039 Score=60.82 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=59.0
Q ss_pred HHHHhhhcCCCcEEEEeCCccccCCCCC--------CCEEEEcCCCCCchhhhhcccccCCCCCccE-EEEEecCC--cc
Q 014314 329 TRYKGFKEGNKRILVATDLVGRGIDIER--------VNIVINYDMPDSADTYLHRVGRAGRFGTKGL-AITFVSSA--SD 397 (427)
Q Consensus 329 ~~~~~f~~~~~~vlv~T~~~~~Gld~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~-~~~~~~~~--~~ 397 (427)
...+.|.+|+.+|+|.+++++.|+.+.. -++-|.+.+|||....+|..||++|.|+... .+.++.++ -+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4467899999999999999999998753 3456778899999999999999999997433 34434322 34
Q ss_pred HHHHHHHHHHh
Q 014314 398 SDILNQVQARF 408 (427)
Q Consensus 398 ~~~~~~~~~~~ 408 (427)
..+...+.+++
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 44444555544
No 210
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.48 E-value=0.0023 Score=58.63 Aligned_cols=133 Identities=13% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
++.+.+.||||.|||++..-.+.......+....+||-+.|--... .++++.++... ++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im-~vp~---------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA--VEQLKTYADIM-GVPL---------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH--HHHHHHHHHHh-CCce----------------
Confidence 5568999999999998754333333312222224555555433322 23445554443 4433
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc-cHHHHHH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVCK 241 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~ 241 (427)
.++-+|.-|...+. .+.++++|.||=+-+--.+......+..+........-.+.+|||... ++.....
T Consensus 264 ------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 ------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 34445555544333 445567788887764322233345566666666555566778999764 3455555
Q ss_pred Hhc
Q 014314 242 KFM 244 (427)
Q Consensus 242 ~~~ 244 (427)
.|-
T Consensus 334 ~f~ 336 (407)
T COG1419 334 QFS 336 (407)
T ss_pred Hhc
Confidence 553
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.43 E-value=0.00033 Score=54.86 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=12.9
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
++.++|.|++|+|||...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999997643
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0012 Score=61.23 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=63.6
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCC--CCCCeEEEEEe-Cc-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLC-HT-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (427)
+.+++.||||+|||++..-.+...... ..+. ++.+++ .+ |.-+..+ ++.++... ++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~-~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~~----------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSL-NIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVKA----------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCC-eEEEEeccCccHHHHHH---HHHHhhcC-CcceEe-----------
Confidence 458899999999998754333222211 1222 444433 33 3333322 44554433 443321
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC-ceEEEEEccCCcc
Q 014314 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-KQVMMFSATLSKE 235 (427)
Q Consensus 160 ~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~-~~~v~~SAT~~~~ 235 (427)
+.++..+...+.. +.++++|++|++.+...+......+..++...... ..++.+|||....
T Consensus 239 -----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 -----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred -----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1133444443332 35678999999997753222234455555544433 4567889998643
No 213
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.43 E-value=0.00046 Score=68.84 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCchHHHHhHhhhhcC-CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.+++.|..|+..++.. ...+|.||+|+|||.+..-.+.+....+. ++++++||...+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 5789999999998876 56899999999999765443333333222 899999999999999887765
No 214
>PRK08181 transposase; Validated
Probab=97.39 E-value=0.0019 Score=56.94 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.1
Q ss_pred hcCCeEEEEecCCCCcchHHH
Q 014314 81 ILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~ 101 (427)
-.++++++.||+|+|||-.+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH
Confidence 357889999999999996433
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0028 Score=58.21 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=67.8
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC--ch-HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH--TR-ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P--~~-~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 160 (427)
+.+++.||||+|||+.....+...... + . ++.++.. .| ..+.|+. .+.... ++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-G-k-kVglI~aDt~RiaAvEQLk----~yae~l-gipv-------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-K-K-TVGFITTDHSRIGTVQQLQ----DYVKTI-GFEV-------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-C-C-cEEEEecCCcchHHHHHHH----HHhhhc-CCcE--------------
Confidence 457899999999998655444333222 2 1 4444443 23 2344443 332221 2222
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc-cHHHH
Q 014314 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPV 239 (427)
Q Consensus 161 ~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~ 239 (427)
+...++..+...+.... .-.++++|+||-+-+..........+..++....+..-++.+|||... ++...
T Consensus 300 --------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred --------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 22345555555443211 012468899999886644333344455555544444445668887654 44566
Q ss_pred HHHhc
Q 014314 240 CKKFM 244 (427)
Q Consensus 240 ~~~~~ 244 (427)
+..+.
T Consensus 371 ~~~F~ 375 (436)
T PRK11889 371 ITNFK 375 (436)
T ss_pred HHHhc
Confidence 65553
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0012 Score=60.85 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
+..+++.||||+|||+.....+.......+.. ++.+++. ...-.--.++++.+.... ++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit~-D~~R~ga~EqL~~~a~~~-gv~~~~-------------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLTT-DSYRIGGHEQLRIFGKIL-GVPVHA-------------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEec-ccccccHHHHHHHHHHHc-CCceEe--------------
Confidence 45689999999999987544333322221111 4444432 221111123344444333 333322
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccH-HHHHH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI-RPVCK 241 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~-~~~~~ 241 (427)
+.++..+...+. .+.+.++|+||.+-..-.+......+..+.........++.+|||..... ...+.
T Consensus 200 --------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 200 --------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred --------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 233333333222 23455789999997543211222333333232233345778899986543 33444
Q ss_pred Hh
Q 014314 242 KF 243 (427)
Q Consensus 242 ~~ 243 (427)
.+
T Consensus 268 ~f 269 (374)
T PRK14722 268 AY 269 (374)
T ss_pred HH
Confidence 44
No 217
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.29 E-value=0.0033 Score=50.06 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCcchH
Q 014314 83 GMDVICQAKSGMGKTAV 99 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~ 99 (427)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999964
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.27 E-value=0.0016 Score=54.75 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHh
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (427)
+++++|+||-+.+...+......+..+.....+..-.+.+|||........+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 3456899998875543234456677777777666778889999876654444433
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.25 E-value=0.0013 Score=52.01 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
+..+++.||+|+|||..... +...+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 45789999999999986433 333333222 146777766543
No 220
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.00073 Score=59.25 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=18.5
Q ss_pred hhhcCCeEEEEecCCCCcchHHHH
Q 014314 79 QAILGMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 79 ~~~~~~~~li~~~tGsGKT~~~~~ 102 (427)
.+-.+.++++.||+|+|||..+..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH
Confidence 334577899999999999965443
No 221
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.21 E-value=0.032 Score=62.88 Aligned_cols=235 Identities=12% Similarity=0.144 Sum_probs=120.7
Q ss_pred CCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
.+++-|++++..++.. +-.+|.|+.|+|||.+ +-.+...+...+ .+++.++||...+..+.+.... .
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~G--~~V~~lAPTgrAA~~L~e~~g~--------~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQG--YEIQIITAGSLSAQELRQKIPR--------L 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHhcc--------h
Confidence 5889999999999885 4489999999999975 333444433322 3899999998877666543321 1
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhC-CCCce
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQ 224 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~~~~~ 224 (427)
... .......+.. ..-..|...|+ .....+..-++||||||-.+.. ..+..++... ..+.+
T Consensus 498 A~T------i~~~l~~l~~---~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~-----~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 498 AST------FITWVKNLFN---DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN-----NELLKLIDKAEQHNSK 559 (1960)
T ss_pred hhh------HHHHHHhhcc---cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHhhcCCE
Confidence 000 0111111111 11122333333 2233456778999999996643 4455555544 45678
Q ss_pred EEEEEccC--C----ccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHH-HHHHHHHhc-CCCeEEEEEC
Q 014314 225 VMMFSATL--S----KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-KLNDLLDAL-DFNQVVIFVK 296 (427)
Q Consensus 225 ~v~~SAT~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~-~~~~~ivf~~ 296 (427)
+|++.=+- + ......+.........+ ....... ..+ .........+.. ....++... ...+++|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l--~~i~rq~-~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGGVTTYAW--VDTKQQK-ASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCCCcEEEe--ecccccC-cce--eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 88875442 1 12222333221111121 1111111 111 111122222222 333344333 3345899999
Q ss_pred CchhHHHHHHHHHh----CCC------CeEEec-CCCCHHHHHHHHHhhhcC
Q 014314 297 SVSRAAELNKLLVE----CNF------PSICIH-SGMSQEERLTRYKGFKEG 337 (427)
Q Consensus 297 ~~~~~~~l~~~L~~----~~~------~~~~l~-~~~~~~~r~~~~~~f~~~ 337 (427)
+......+....+. .|. ....|. ..++..++.. ...|+.|
T Consensus 635 t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~G 685 (1960)
T TIGR02760 635 THREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQG 685 (1960)
T ss_pred CcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCC
Confidence 98887777666543 332 222232 3566666653 3555554
No 222
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.21 E-value=0.0012 Score=61.46 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=42.9
Q ss_pred CCchHHHHhHhhh------hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 68 HPSEVQHECIPQA------ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 68 ~~~~~Q~~~i~~~------~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
+|++-|+.++..+ ..+..++|.|+-|+|||..+ -.+...+.. . +..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~-~-~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS-R-GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc-c-cceEEEecchHHHHHhc
Confidence 3677899998888 55788999999999999753 223333332 2 22789999998766655
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0077 Score=57.08 Aligned_cols=129 Identities=16% Similarity=0.257 Sum_probs=65.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhcc-CCCCCCeEEEEEe-Cc-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLC-HT-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (427)
++.+++.||||+|||++....+.... ...+. ++.++. .+ +.-+ .++++.+.... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~--~V~li~~D~~r~~a---~eqL~~~a~~~-~vp~------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK--KVALITLDTYRIGA---VEQLKTYAKIM-GIPV------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC--eEEEEECCccHHHH---HHHHHHHHHHh-CCce-------------
Confidence 44688899999999976554333332 22222 444444 22 2212 12333333222 3322
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHh-CCCCceEEEEEccCCc-cHH
Q 014314 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSK-EIR 237 (427)
Q Consensus 160 ~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~-~~~~~~~v~~SAT~~~-~~~ 237 (427)
..+.++..+...+.. +.++++||||-+-....+......+..++.. ..+....+.+|||... .+.
T Consensus 282 ---------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ---------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 222344444444432 2357899999987543322333445555552 2233457778998764 344
Q ss_pred HHHHHh
Q 014314 238 PVCKKF 243 (427)
Q Consensus 238 ~~~~~~ 243 (427)
.....+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 444444
No 224
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.05 E-value=0.00094 Score=67.42 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=54.1
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
.|++-|++++.+ ....++|.|+.|||||.+.+.-+...+.. +-.+-++|+++-|+..|.++.+++.....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999875 34678899999999998866656555533 22233799999999999999999987654
No 225
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.04 E-value=0.00079 Score=65.68 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=90.9
Q ss_pred CCCchHHHHhHhhhhcC--------C--eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 67 EHPSEVQHECIPQAILG--------M--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~--------~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
..+...|.+++-...+. . .++|-...|.||-.+..-.+++...++.+ ++|++.-+..|--...+.+..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK--rAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK--RALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc--eeEEEEeccccccchhhchhh
Confidence 35677787777655542 2 27777777777654433334444333332 899999998887776666665
Q ss_pred HhccCCCceEEEEEcCc--chHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC------------CCC-ccEEEEcCCcc
Q 014314 137 FSTYLPDIKVAVFYGGV--NIKIHKDLLKNECPQIVVGTPGRILALARDKDLS------------LKN-VRHFILDECDK 201 (427)
Q Consensus 137 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~------------~~~-~~~iVvDEah~ 201 (427)
+.. +++.|..+.--. .+..+... +-.-.|+++|+..|.......... -.+ =.+||+||+|.
T Consensus 341 igA--~~I~V~alnK~KYakIss~en~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHk 416 (1300)
T KOG1513|consen 341 IGA--TGIAVHALNKFKYAKISSKENT--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHK 416 (1300)
T ss_pred cCC--CCccceehhhcccccccccccC--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhh
Confidence 532 244433221100 00000000 001269999998886544421110 011 14699999998
Q ss_pred ccc--------CCCcHHHHHHHHHhCCCCceEEEEEccC
Q 014314 202 MLE--------SLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (427)
Q Consensus 202 ~~~--------~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (427)
-.+ +...+..+..+.+.+|+ .++|..|||=
T Consensus 417 AKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATG 454 (1300)
T KOG1513|consen 417 AKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATG 454 (1300)
T ss_pred hcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccC
Confidence 754 13455667777777775 5589999993
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=97.03 E-value=0.0019 Score=56.18 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=26.3
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCC
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (427)
+.+++|+|++|.+.........+..++.........+++|++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 44689999999775533444556666654443333455666544
No 227
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.99 E-value=0.00098 Score=54.36 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=53.2
Q ss_pred EEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCC
Q 014314 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 166 (427)
Q Consensus 87 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (427)
+|.|+-|-|||.+.=+.+........ .+++|.+|+.+-+..+++.+..-.... +.+.. ...............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~----~~~~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKAL-GYKEE----KKKRIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhcccc-ccccc----ccccccccccccccc
Confidence 57899999999865554444444333 479999999998888776665433221 11110 000000001111122
Q ss_pred CcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCC
Q 014314 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (427)
Q Consensus 167 ~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (427)
..|-+..|+.+.... ...+++|||||=.+- .+.+..++... . .+++|.|..
T Consensus 74 ~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp-----~p~L~~ll~~~---~-~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAEK-------PQADLLIVDEAAAIP-----LPLLKQLLRRF---P-RVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT-----------SCEEECTGGGS------HHHHHHHHCCS---S-EEEEEEEBS
T ss_pred ceEEEECCHHHHhCc-------CCCCEEEEechhcCC-----HHHHHHHHhhC---C-EEEEEeecc
Confidence 478888888775421 234789999998653 34444554332 2 466677764
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.93 E-value=0.0058 Score=66.12 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCchHHHHhHhhhhcC--CeEEEEecCCCCcchHH--HHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVF--VLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~--~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
.+++-|++|+..++.+ +-++|.|..|+|||... ++.++..+.... +..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~-g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESE-RPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhcc-CceEEEEechHHHHHHH
Confidence 6899999999999965 56899999999999763 222333322222 23788899998776655
No 229
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.93 E-value=0.0076 Score=66.09 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=44.5
Q ss_pred CCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccC--CCCCCeEEEEEeCchHHHHHH
Q 014314 67 EHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~ 130 (427)
..+++-|+.|+..++.+ +-++|.|..|+|||... -.++..+. ....+.+++.++||-..+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 36899999999999985 45899999999999753 22332221 111223788899998776654
No 230
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.91 E-value=0.0054 Score=61.72 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=57.2
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
..|++-|++++.. ...+++|.|..|||||.+.+--+...+... -.+.++|+++.++..|..+.+++....+. .++.
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~-~~v~ 271 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT-EDIT 271 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-CCcE
Confidence 4799999999864 335689999999999987655443333221 12238999999999999999988876542 2445
Q ss_pred EEEEEc
Q 014314 146 VAVFYG 151 (427)
Q Consensus 146 ~~~~~g 151 (427)
+..+++
T Consensus 272 v~TFHS 277 (684)
T PRK11054 272 ARTFHA 277 (684)
T ss_pred EEeHHH
Confidence 555444
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=96.91 E-value=0.013 Score=57.14 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=55.9
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.|.|+|+..+..+..++-.++..+=..|||.+....++......++ ..+++++|+...+..+++.++.+....|.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~-~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKD-KNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 6889999999887666667888889999998766444433322222 38999999999999999988876655443
No 232
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.90 E-value=0.0049 Score=59.81 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=52.8
Q ss_pred hHHHHhHhhhhc-----C----CeEEEEecCCCCcchHHHHHhhhcc-CCCCCCeEEEEEeCchHHHHHHHHHHHHHhcc
Q 014314 71 EVQHECIPQAIL-----G----MDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLCHTRELAYQICHEFERFSTY 140 (427)
Q Consensus 71 ~~Q~~~i~~~~~-----~----~~~li~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (427)
|+|+-.+..++- | +.+++..|=|-|||......++..+ ..+..+..+++.++++..|..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 677777776662 1 3488888999999975544444333 33333458999999999999999999988766
Q ss_pred CCCc
Q 014314 141 LPDI 144 (427)
Q Consensus 141 ~~~~ 144 (427)
.|.+
T Consensus 81 ~~~l 84 (477)
T PF03354_consen 81 SPEL 84 (477)
T ss_pred Chhh
Confidence 5433
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=96.85 E-value=0.0034 Score=54.44 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCC-CCceEEEEEccCCcc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKE 235 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~ 235 (427)
.+.+++++||+|.+.....+...+..++.... ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 35678999999988643333434444444332 344566777776543
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.82 E-value=0.0049 Score=50.16 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (427)
...+++|+||||.|.. .....+.+.+..-+....++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~--~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--EAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-H--HHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhH--HHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 5688999999999865 6667788888888888877777765443
No 235
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.01 Score=54.26 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=69.0
Q ss_pred CCchHHHHhHhhhhcC----CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhc-cCC
Q 014314 68 HPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST-YLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~ 142 (427)
.++|+|...+..+... +..++.||.|.|||..+...+-..+-..+.... -|. .+..++.+.. ..|
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~---~Cg-------~C~sC~~~~~g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG---ACG-------SCKGCQLLRAGSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC-------CCHHHHHHhcCCCC
Confidence 3579999999988874 348899999999997654433332221111000 011 1222333322 223
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
++....-.++.. .|-|-....+...+.... .....+++||||+|.|.. .-...+.+.++.-+..
T Consensus 73 D~~~i~~~~~~~-------------~i~id~iR~l~~~~~~~~-~~~~~kv~iI~~a~~m~~--~aaNaLLK~LEEPp~~ 136 (328)
T PRK05707 73 DNFVLEPEEADK-------------TIKVDQVRELVSFVVQTA-QLGGRKVVLIEPAEAMNR--NAANALLKSLEEPSGD 136 (328)
T ss_pred CEEEEeccCCCC-------------CCCHHHHHHHHHHHhhcc-ccCCCeEEEECChhhCCH--HHHHHHHHHHhCCCCC
Confidence 333221111100 111111111222111111 234678899999999865 4555666677776655
Q ss_pred ceEEEEEcc
Q 014314 223 KQVMMFSAT 231 (427)
Q Consensus 223 ~~~v~~SAT 231 (427)
..++++|..
T Consensus 137 ~~fiL~t~~ 145 (328)
T PRK05707 137 TVLLLISHQ 145 (328)
T ss_pred eEEEEEECC
Confidence 655555443
No 236
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0053 Score=58.27 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCcchHHHHHhh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTL 105 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~ 105 (427)
+..++.||.|+|||.++.+.+-
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999987654433
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.0038 Score=54.31 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+++.||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999643
No 238
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.78 E-value=0.002 Score=65.86 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=55.0
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
..|++-|++++.+ ....++|.|..|||||.+...-+...+.. +-.+.++|+++-|+..|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999875 34679999999999998866555554432 22234799999999999999999988764
No 239
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.75 E-value=0.0045 Score=60.85 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=79.9
Q ss_pred CCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHH-HHHHHHhccCCCc
Q 014314 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC-HEFERFSTYLPDI 144 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~-~~~~~~~~~~~~~ 144 (427)
..+|+|.+.+..+... +.+.++.++-+|||.+.+..+...+...+. .++++.||..++..+. ..+..+....|.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5689999999987763 569999999999999766666666665554 7899999999999887 4565555544443
Q ss_pred eEEEEE---cCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 145 KVAVFY---GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 145 ~~~~~~---g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
+-.+.. .........+.+. + ..+.+.....-. .+.-..++++++||++.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-g-g~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-G-GFLYLVGANSPS------NLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCchhheecC-C-CEEEEEeCCCCc------ccccCCcCEEEEechhhccc
Confidence 311111 0111122222222 2 244444322211 12335678999999998853
No 240
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.72 E-value=0.0025 Score=65.15 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=58.2
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhcc-CCCce
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIK 145 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~ 145 (427)
.|++-|++++.+. ...++|.|..|||||.+...-+...+.. +-.+-++|+|+-|+..|.++.+++.++... ..++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~~~ 86 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGGMW 86 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccCCCCCE
Confidence 5899999998753 4579999999999998866555544432 222337999999999999999999887643 12344
Q ss_pred EEEEE
Q 014314 146 VAVFY 150 (427)
Q Consensus 146 ~~~~~ 150 (427)
+.++|
T Consensus 87 i~TfH 91 (721)
T PRK11773 87 VGTFH 91 (721)
T ss_pred EEcHH
Confidence 44443
No 241
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.61 E-value=0.015 Score=53.78 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
...++||+||+|.+.. .....+..++...+....+|+++.
T Consensus 124 ~~~~vlilDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE--DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH--HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4567899999998754 334455566665555566665443
No 242
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.58 E-value=0.0072 Score=51.91 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=29.6
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEEEccCCccH
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (427)
...+++++|.+|.+.........+..++..+ ..+.++|+.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4567899999998865322334444444332 34567887777777654
No 243
>PRK08727 hypothetical protein; Validated
Probab=96.55 E-value=0.012 Score=51.17 Aligned_cols=47 Identities=4% Similarity=0.070 Sum_probs=25.5
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEEEccCCccH
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (427)
+.++||+||+|.+..+......+..++... .+..++|+.|...|...
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 446899999998865333333333443332 22345555555555443
No 244
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.53 E-value=0.007 Score=61.59 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=53.7
Q ss_pred CchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
|++-|++++.+ ...+++|.|..|||||.+.+--+...+.. +..+.++++|+.|+..+.++.+++.+..+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899999875 35679999999999998876666665543 22334789999999999999999987654
No 245
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.52 E-value=0.011 Score=51.33 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.9
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+..+++.|++|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.05 Score=48.08 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC-ch--HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH-TR--ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P-~~--~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (427)
+..+++.|++|+|||..+...+...... +. ++.++.. +. ..+.||....... ++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~-~v~~i~~D~~ri~~~~ql~~~~~~~-----~~~~~~----------- 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KK-TVGFITTDHSRIGTVQQLQDYVKTI-----GFEVIA----------- 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc--CC-eEEEEecCCCCHHHHHHHHHHhhhc-----CceEEe-----------
Confidence 3568999999999998655433332211 12 4444443 22 4455554332221 222211
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCC-ccHHH
Q 014314 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS-KEIRP 238 (427)
Q Consensus 160 ~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~-~~~~~ 238 (427)
..++..+...+..- ....++++||+|-+-+.-........+..+.....+..-++.+|||.. .+...
T Consensus 136 -----------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 136 -----------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred -----------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 12344443332211 012356889999997664322334445555555555444667899865 45556
Q ss_pred HHHHhc
Q 014314 239 VCKKFM 244 (427)
Q Consensus 239 ~~~~~~ 244 (427)
.++.+.
T Consensus 204 ~~~~f~ 209 (270)
T PRK06731 204 IITNFK 209 (270)
T ss_pred HHHHhC
Confidence 666553
No 247
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.011 Score=57.94 Aligned_cols=41 Identities=7% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
.+++++||||+|.|.. ..+ ..+.+.++.-+....+|+.|-.
T Consensus 123 gr~KViIIDEah~Ls~-~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN-HAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCH-HHH-HHHHHhhccCCCCceEEEEeCC
Confidence 4678999999998865 233 3444555555556666666543
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.018 Score=50.15 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCccEEEEcCCcccccCCCcHH-HHHHHHHh-CCCCceEEEEEcc
Q 014314 188 LKNVRHFILDECDKMLESLDMRR-DVQEIFKM-TPHDKQVMMFSAT 231 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~-~~~~~~~~-~~~~~~~v~~SAT 231 (427)
+.++++||+||++.... ..+.. .+..++.. ......+++.|--
T Consensus 160 l~~~dlLvIDDig~~~~-s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTE-SRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred hccCCEEEEeCCCCCCC-CHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34677999999997754 33433 34445443 2234445554433
No 249
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.46 E-value=0.045 Score=54.91 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhC-C-CCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc
Q 014314 273 LEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-N-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 348 (427)
Q Consensus 273 ~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~-~-~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 348 (427)
..|.+....++... .++++||.++.+..+..+.+.|+.. | ..+..+|+++++.+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666665555443 4678999999999999999999865 4 678999999999999999999999999999999765
Q ss_pred cccCCCCCCCEEEEcCCCCCchhhhhccccc--------CCCCCccEEEEEecCCccHHHHH
Q 014314 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRA--------GRFGTKGLAITFVSSASDSDILN 402 (427)
Q Consensus 349 ~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~--------~R~g~~g~~~~~~~~~~~~~~~~ 402 (427)
.. .-++++..||..+.- -.+|.|--+.- -|.-..|..+++-+.....+.+.
T Consensus 251 vF-aP~~~LgLIIvdEEh--d~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 251 VF-APVEDLGLVAIWDDG--DDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred EE-eccCCCCEEEEEcCC--chhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 54 567778888766532 23455433211 22334677777776555544443
No 250
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.44 E-value=0.038 Score=52.42 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=30.8
Q ss_pred cEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHh
Q 014314 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (427)
Q Consensus 192 ~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (427)
++||+|.+-+...+......+..+.....+..-++.++||...+....+..+
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 6788888854432223444555555555555566777777765554444443
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.43 E-value=0.022 Score=46.25 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=23.0
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
++|.|++|+|||......+..... . + ..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~-~-~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-K-G-GKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-c-C-CEEEEEECCcch
Confidence 578999999999754433333222 1 2 266777665443
No 252
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.0078 Score=57.62 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=27.5
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (427)
+.+++.|++|+|||... .++...+.....+.+++++.+ .++...+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHH
Confidence 45899999999999532 334443332222336666655 455554443
No 253
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.43 E-value=0.0082 Score=54.39 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=43.0
Q ss_pred HHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 59 RAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 59 ~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
..+.+.|. +++.|...+..+.. +++++|+|+||||||+. +-+++..+...+...+++.+-.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 44555555 45677766665555 67899999999999974 44555555322222377777777776
No 254
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.02 Score=51.87 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=74.1
Q ss_pred CCCchHHHHhHhhhhc----C---CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH-h
Q 014314 67 EHPSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF-S 138 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~ 138 (427)
..++|+|..++..+.. + +-.++.||.|+||+..+...+-..+-....... .|+. ++.+ .
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~----------c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT----------RQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH----------HHHHhc
Confidence 4678999999888775 2 248899999999997654322222222111100 0111 1111 1
Q ss_pred ccCCCceEEEEEc-CcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHH
Q 014314 139 TYLPDIKVAVFYG-GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (427)
Q Consensus 139 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~ 217 (427)
...|++.+..... +.+.+ .. ..|.|-....+...+.... .....+++|||+||.|.. .-...+.+.++
T Consensus 70 g~HPD~~~i~~~p~~~~~k-------~~-~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~--~AaNaLLKtLE 138 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGDK-------LR-TEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINR--AACNALLKTLE 138 (319)
T ss_pred CCCCCEEEEecCCCccccc-------cc-ccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCH--HHHHHHHHHhh
Confidence 2335555442111 10000 00 1233322222333222221 224678999999999964 55566777778
Q ss_pred hCCCCceEEEEEccC
Q 014314 218 MTPHDKQVMMFSATL 232 (427)
Q Consensus 218 ~~~~~~~~v~~SAT~ 232 (427)
.-+....+|++|..+
T Consensus 139 EPp~~~~fiL~~~~~ 153 (319)
T PRK08769 139 EPSPGRYLWLISAQP 153 (319)
T ss_pred CCCCCCeEEEEECCh
Confidence 777777677776543
No 255
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.017 Score=57.59 Aligned_cols=39 Identities=8% Similarity=0.246 Sum_probs=25.3
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..++++||||+|.|.. .. ...+.+++..-+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~-~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN-HA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCH-HH-HHHHHHHHHhcCCCeEEEEEE
Confidence 4678999999998865 23 344555566655556555554
No 256
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.029 Score=54.60 Aligned_cols=39 Identities=8% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
.+++++||||+|.+.. .....+.+.+...+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~--~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG--HSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCH--HHHHHHHHHHhccCCCeEEEEEE
Confidence 4678999999998865 23344555666666666666655
No 257
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.39 E-value=0.0086 Score=54.40 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=43.9
Q ss_pred HHHHHHhCCCCCCchHHHHhHhhhh-cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 57 LLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 57 l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
-+..|.+.|+ +++.|...+..+. .+++++|+|+||||||.. +-.++..+...+...+++++-.+.++
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3455666665 4567777776554 477899999999999954 45555543222222377888887776
No 258
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.057 Score=51.91 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||+|.+.. .-...+.+.+...+....+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~--~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN--SAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 5788999999998865 22334455555555555555544
No 259
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.34 E-value=0.077 Score=53.93 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.3
Q ss_pred EEEEecCCCCcchHHH
Q 014314 86 VICQAKSGMGKTAVFV 101 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~ 101 (427)
++|.|+||+|||.+.-
T Consensus 784 LYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 784 LYISGMPGTGKTATVY 799 (1164)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4599999999998743
No 260
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.023 Score=57.17 Aligned_cols=131 Identities=9% Similarity=0.131 Sum_probs=60.2
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (427)
+-+.+.||||+|||++....+.......++. ++.++.-...-+ -..++++.+.... ++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~Ri-gA~eQL~~~a~~~-gvpv~---------------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRI-GALEQLRIYGRIL-GVPVH---------------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccch-HHHHHHHHHHHhC-CCCcc----------------
Confidence 3478899999999987554333322222211 444444221110 0123344444332 33221
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCcc-HHHHHHH
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPVCKK 242 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~~~~ 242 (427)
.+.+|..+...+. .+.+.++|+||=+-+.-.+......+..+.....+...++.++||.... +...+..
T Consensus 247 ------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~ 316 (767)
T PRK14723 247 ------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA 316 (767)
T ss_pred ------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH
Confidence 2234555444443 2234567777776654322223333333333333444566677776433 3334444
Q ss_pred h
Q 014314 243 F 243 (427)
Q Consensus 243 ~ 243 (427)
|
T Consensus 317 f 317 (767)
T PRK14723 317 Y 317 (767)
T ss_pred H
Confidence 4
No 261
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.31 E-value=0.019 Score=64.68 Aligned_cols=62 Identities=27% Similarity=0.269 Sum_probs=44.3
Q ss_pred CCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHH---HHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 67 EHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFV---LSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
..+++.|+.|+..++.+ +-++|.|..|+|||.... -++.+.+... +.+++.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHH
Confidence 37899999999999875 447889999999997641 2233333222 23788899997766554
No 262
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.02 Score=58.28 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (427)
..++++||||+|.|.. .....+.+.+..-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEE
Confidence 4678999999998854 3444555666665555655554
No 263
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.027 Score=54.17 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=44.2
Q ss_pred ccCCcccccCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchH
Q 014314 36 AKKGYVGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~ 99 (427)
...++...+..+|++.+-..++...|... .+++|-.++.-.+.. -..++++||+|+|||+.
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 35577778888999999888888777644 455555555444332 44599999999999974
No 264
>PLN03025 replication factor C subunit; Provisional
Probab=96.30 E-value=0.044 Score=50.21 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=24.4
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..+++|+||+|.+.. .....+.+.+...+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~--~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTS--GAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCH--HHHHHHHHHHhcccCCceEEEEe
Confidence 478999999998864 33445555566555555555443
No 265
>PF13173 AAA_14: AAA domain
Probab=96.29 E-value=0.063 Score=41.72 Aligned_cols=38 Identities=8% Similarity=0.205 Sum_probs=24.9
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
.-.+|++||+|.+ .++...+..+.... .+.++++++..
T Consensus 61 ~~~~i~iDEiq~~---~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYL---PDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhh---ccHHHHHHHHHHhc-cCceEEEEccc
Confidence 3457999999988 35666677776654 34555554443
No 266
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.038 Score=54.41 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=26.4
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++||||+|.+.. .-...+.+.+...+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~--~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT--AGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 5678999999998865 33444556666665556555555
No 267
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.02 Score=58.74 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..++++||||+|.|.. .-...+.++++..+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~--~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 5678999999999865 44455667777776666666655
No 268
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.27 E-value=0.015 Score=55.21 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=22.3
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (427)
+.+++.|++|+|||... ..+...+.....+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 45899999999999653 33333333222223566664
No 269
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.04 Score=45.23 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=52.6
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (427)
+-.++.||++||||.-.+-.+-.....+. ++++..|...- ++ +...+.-.-|.+.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~---------R~-----~~~~V~Sr~G~~~-------- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDT---------RY-----GVGKVSSRIGLSS-------- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEeccccc---------cc-----ccceeeeccCCcc--------
Confidence 34689999999999864444433333332 78888886431 11 1111111112111
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
.-++|-.+..+...+....... .++.|.+|||+-+.
T Consensus 60 ---~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 60 ---EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred ---cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 2566667777777666543332 27899999999553
No 270
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.061 Score=50.61 Aligned_cols=132 Identities=12% Similarity=0.180 Sum_probs=62.1
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
+.-+.+.||||+|||+.....+-............++.+.+.-.. ..+++..++... ++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~il-Gvp~~~-------------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLL-GVSVRS-------------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHc-CCceec--------------
Confidence 445889999999999865432222211111111345555543221 122344444333 333222
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCcc-HHHHHH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPVCK 241 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~~~ 241 (427)
+.++..+...+. .+.+.+.+++|.+-..-........+..+.........++.+|||.... +.....
T Consensus 254 --------v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 254 --------IKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred --------CCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 222333322222 2456678999986433211112233333333233345577799997544 444444
Q ss_pred Hh
Q 014314 242 KF 243 (427)
Q Consensus 242 ~~ 243 (427)
.+
T Consensus 322 ~f 323 (420)
T PRK14721 322 AY 323 (420)
T ss_pred Hh
Confidence 44
No 271
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.023 Score=54.24 Aligned_cols=50 Identities=10% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHh-CCCCceEEEEEccCCccHHH
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKEIRP 238 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~-~~~~~~~v~~SAT~~~~~~~ 238 (427)
.+.+++++||+|.+.........+..++.. .....++++.|-+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 356789999999886532233333343332 22446666666555655443
No 272
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.022 Score=56.30 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=24.0
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..++++||||+|.+.. .. ...+.+.+...+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~-~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTN-TA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCH-HH-HHHHHHhcccCCCCeEEEEEE
Confidence 4688999999998865 22 233444444444455555544
No 273
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.21 E-value=0.012 Score=49.19 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=32.3
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
++|.|++|+|||...+-.+...+..+. ++++++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~---~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE---PGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC---cEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999865544444443322 6787765 45567776666655
No 274
>PRK08116 hypothetical protein; Validated
Probab=96.20 E-value=0.036 Score=49.24 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=25.0
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
..+++.|++|+|||..+. ++.+.+...+ ..++++ +..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~~--~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEKG--VPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHcC--CeEEEE-EHHHHHHHH
Confidence 349999999999997533 3444443322 144444 445554443
No 275
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.18 E-value=0.062 Score=49.22 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=25.6
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..++||+||+|.+.. ......+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~-~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-ADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccC-HHHHHHHHHHHHhcCCCceEEEEc
Confidence 456899999998833 234455666666666666666544
No 276
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.17 E-value=0.017 Score=52.13 Aligned_cols=67 Identities=24% Similarity=0.395 Sum_probs=42.8
Q ss_pred HHHHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 57 LLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 57 l~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
-++.+.+.|. +++-|...+..+.. +++++|+|+||||||.. +-.++..+.......+++++-...++
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 3455555554 34555555555444 67899999999999975 44555555432222377888877776
No 277
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.15 E-value=0.024 Score=50.68 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 56 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 56 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
++.++|...++.+..+.-.+.+.-+..|.-++|.|++|+|||......+.......+ .+++++.-- .-..++...+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcc-cCHHHHHHHHH
Confidence 445556544444333333333444556778999999999999755544444333212 267777642 23344444443
Q ss_pred H
Q 014314 136 R 136 (427)
Q Consensus 136 ~ 136 (427)
.
T Consensus 80 ~ 80 (271)
T cd01122 80 G 80 (271)
T ss_pred H
Confidence 3
No 278
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.15 E-value=0.0087 Score=61.45 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
..|++-|++++.+. ..+++|.|..|||||.+.+.-+...+... -.+-++|+++-|+..|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999998753 56799999999999988666555554332 1223799999999999999998887754
No 279
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.23 Score=43.66 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCe-----EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMD-----VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 119 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-----~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 119 (427)
...|.+..-.+...++|++.-+. |+ -+|++..|+. +++-||+|+||+. +.-+.+.-.+ ..++
T Consensus 129 NVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVATEAn-----STFF 195 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVATEAN-----STFF 195 (439)
T ss_pred CCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHhhcC-----CceE
Confidence 34566665556667777765321 11 2456666654 8999999999995 3333332221 4578
Q ss_pred EeCchHHHHHHHHHHHHH
Q 014314 120 LCHTRELAYQICHEFERF 137 (427)
Q Consensus 120 l~P~~~L~~q~~~~~~~~ 137 (427)
-+.+..|+..|..+-.++
T Consensus 196 SvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGESEKL 213 (439)
T ss_pred EeehHHHHHHHhccHHHH
Confidence 888888988876555444
No 280
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.025 Score=55.77 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.4
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
.+++++||||+|.+.. .....+.+.+...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~--~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLST--HSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhcCCCCcEEEEEE
Confidence 4578999999998864 33344555666655555555544
No 281
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.11 E-value=0.021 Score=55.03 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (427)
+.+++.||+|+|||.... ++...+.......+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 458999999999996533 33333332222235566543 444443
No 282
>PRK12377 putative replication protein; Provisional
Probab=96.10 E-value=0.041 Score=48.02 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (427)
..++++.|++|+|||..+. ++...+...+. .+ +.++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~g~--~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAKGR--SV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHcCC--Ce-EEEEHHHHHHHHH
Confidence 3579999999999996433 33333332221 33 4444456655543
No 283
>PTZ00293 thymidine kinase; Provisional
Probab=96.10 E-value=0.022 Score=47.93 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=26.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
|.=-++.||++||||.-.+-.+......+. +++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~---kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK---KCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC---ceEEEEeccc
Confidence 444688999999999754444444333322 7888888653
No 284
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.054 Score=53.89 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++||||+|.+.. .....+.+.+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998754 22334555555555566666655
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.18 Score=48.73 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.3
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
|+.+.+.||+|+|||+....
T Consensus 350 G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56788999999999976543
No 286
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.06 E-value=0.088 Score=51.01 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=79.2
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH-HhccCCCceEEEEEcCcchHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER-FSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
+-.+..-|=--|||+. +.|++..+...-.+.++.|++.-+-.++-++.++.. +.+++|.-.+....++
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~---------- 271 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN---------- 271 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc----------
Confidence 3456667999999985 677887777766677999999999888887777763 3333443333222221
Q ss_pred hcCCCcEEEechH-----HHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC-CCceEEEEEcc
Q 014314 163 KNECPQIVVGTPG-----RILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSAT 231 (427)
Q Consensus 163 ~~~~~~I~v~T~~-----~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT 231 (427)
.|.+.-|+ .+..-...+...-.++++++|||||-+.. ..+..++..+. ++.++|++|.|
T Consensus 272 -----tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~-----~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 272 -----VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK-----DAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -----EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH-----HHHHHhhhhhcccCceEEEEeCC
Confidence 23333332 11112223334456788999999995542 34445554443 46788888887
No 287
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.042 Score=53.35 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.9
Q ss_pred eEEEEecCCCCcchHHHH
Q 014314 85 DVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~ 102 (427)
..++.||.|+|||.++..
T Consensus 38 a~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987544
No 288
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.03 E-value=0.043 Score=51.65 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.6
Q ss_pred eEEEEecCCCCcchHHHH
Q 014314 85 DVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~ 102 (427)
-++++|++|+|||++..-
T Consensus 102 vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999976543
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.027 Score=49.49 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=31.4
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
++.++++.|++|+|||..+........ ..+ .-++++++.+++.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g---~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG---ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC---CeEEEEEHHHHHHHHHHHH
Confidence 577899999999999975433333333 222 3456666777777665433
No 290
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.02 E-value=0.011 Score=49.65 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (427)
.+.++||+||||.|.+ +-...+.+-.....+..++.+.
T Consensus 112 grhKIiILDEADSMT~--gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA--GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CceeEEEeeccchhhh--HHHHHHHHHHHHHcccchhhhh
Confidence 5677899999999976 5555555555555555544443
No 291
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.01 Score=56.04 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=32.2
Q ss_pred chHHHHhHhhhhcCCe--EEEEecCCCCcchHHHHHhhhccCCCC
Q 014314 70 SEVQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNP 112 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~--~li~~~tGsGKT~~~~~~~~~~~~~~~ 112 (427)
.+.|...+..++.... +++.||||||||++ +..++..+....
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 6778888888887544 78899999999976 666777766544
No 292
>PRK06921 hypothetical protein; Provisional
Probab=95.98 E-value=0.023 Score=50.30 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (427)
++++++.|++|+|||... .++...+.... +..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~~-g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRKK-GVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhhc-CceEEEEEH-HHHHHH
Confidence 567999999999999643 33444443321 225566553 444443
No 293
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.048 Score=50.69 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=28.7
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccC
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (427)
....+++||||+|.+.. .....+.+.++..+....+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~--~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA--NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCH--HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 35678999999998854 44455666666655556566655543
No 294
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.97 E-value=0.04 Score=53.96 Aligned_cols=135 Identities=12% Similarity=0.107 Sum_probs=77.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhcc-CCCceEEEEEcCcchHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDL 161 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 161 (427)
.+-.++..|=-.|||+... +++..+.....+.++++.+|.+..+..+++++...... ++...+....| ..+. -.
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I~---i~ 328 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETIS---FS 328 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEEE---EE
Confidence 4557888899999998655 45543332222349999999999999999999876543 22222222223 1110 01
Q ss_pred HhcCC-CcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccC
Q 014314 162 LKNEC-PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (427)
Q Consensus 162 ~~~~~-~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (427)
+.++. ..|.+.|. ...+...=..++++|+|||+.+.. .-+...+ -++.. .+.++|++|.|-
T Consensus 329 f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~-~al~~il-p~l~~--~n~k~I~ISS~N 390 (738)
T PHA03368 329 FPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP-DAVQTIM-GFLNQ--TNCKIIFVSSTN 390 (738)
T ss_pred ecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH-HHHHHHH-HHHhc--cCccEEEEecCC
Confidence 11221 24555432 111222234788999999998865 2222222 22222 367889999884
No 295
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.97 E-value=0.15 Score=51.79 Aligned_cols=76 Identities=17% Similarity=0.348 Sum_probs=63.9
Q ss_pred CCeEEEEECCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 364 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~ 364 (427)
+.++||.++++..+.++.+.|++ .|..+..+||+++..+|........+|+.+|+|+|..+.. +.+.++..||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 57899999999999999999986 4788999999999999998888889999999999974432 5567788777544
No 296
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.96 E-value=0.016 Score=51.88 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=44.5
Q ss_pred CCCCCchHHHHhHhhhhcCC-eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHH
Q 014314 65 GFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 127 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 127 (427)
.|..+++-|...+..+.... +++++|.||||||+. +-++........ +++.+--+.+|-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhhc
Confidence 35568889988888888755 899999999999974 444444544443 888888888873
No 297
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.043 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCeEEEEecCCCCcchHHHHHh
Q 014314 83 GMDVICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~ 104 (427)
++.+++.||+|+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4558899999999997655433
No 298
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.94 E-value=0.12 Score=51.03 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=47.7
Q ss_pred chHHHHhHhhhhc---CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 70 SEVQHECIPQAIL---GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 70 ~~~Q~~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
.|.-.+-+..++. .+-.++.+|=|.|||.+..+.+...+... +.+++|.+|...-+.++++.++....
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 4444444554444 45578899999999987655444333212 24899999999999999988887765
No 299
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.93 E-value=0.024 Score=51.68 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
++++++.|+||+|||.... ++...+...+ ..++++ +..+|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~~g--~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLDRG--KSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHHCC--CeEEEE-EHHHHHHHH
Confidence 5679999999999997433 3333333222 145554 445554444
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.91 E-value=0.12 Score=46.01 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCC------CCceEEEEEccCCccHHHHHHHh
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP------HDKQVMMFSATLSKEIRPVCKKF 243 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~------~~~~~v~~SAT~~~~~~~~~~~~ 243 (427)
.++++||+|=+-+...+......+..+..... ....++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45678999988766432334445556555444 45567788898765544444443
No 301
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.055 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=16.9
Q ss_pred CCeEEEEecCCCCcchHHHHHh
Q 014314 83 GMDVICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~ 104 (427)
++-+++.||||+|||++....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3458899999999998755444
No 302
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.88 E-value=0.12 Score=50.94 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEEEccCCccH
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (427)
.++++||||++|.+.........+..++..+ ..++++|+.|-..|..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 3467899999998865333334444444433 33566776655555544
No 303
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.87 E-value=0.028 Score=53.26 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=74.3
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (427)
.++.|+.|||||.+....++..+...+.+.+++++-|+.. +...+...+......+ ++....-........ .+.+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i---~~~~ 79 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEI---KILN 79 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEE---EecC
Confidence 5788999999998887777766555322348899988886 6777777777655443 332111111110000 0111
Q ss_pred CCCcEEEech-HHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCcc
Q 014314 165 ECPQIVVGTP-GRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 235 (427)
Q Consensus 165 ~~~~I~v~T~-~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~ 235 (427)
....|++..- +...++. ....+.++.+|||..+.. ..+...+.++ +. +.....+++|.||+..
T Consensus 80 ~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~-~~~~~l~~rl-r~-~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTF-EDIKELIPRL-RE-TGGKKFIIFSSNPESP 143 (396)
T ss_pred CCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCH-HHHHHHHHHh-hc-cCCccEEEEEcCcCCC
Confidence 0124555443 2221111 223368899999998854 2222222222 11 1222358899998753
No 304
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.048 Score=54.05 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
+...+++||||+|.+.. .-...+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~--~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST--AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 45678999999998864 23344555566666666666655
No 305
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.82 E-value=0.047 Score=48.43 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.2
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997654
No 306
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.82 E-value=0.037 Score=47.98 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=14.7
Q ss_pred CCeEEEEecCCCCcchH
Q 014314 83 GMDVICQAKSGMGKTAV 99 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~ 99 (427)
+..+++.|++|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999964
No 307
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.78 E-value=0.02 Score=62.06 Aligned_cols=123 Identities=20% Similarity=0.167 Sum_probs=75.7
Q ss_pred CchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEE
Q 014314 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 148 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 148 (427)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+..+...-++++++=|+..+..+.+++..-.... +.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~--~~--- 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA--LQ--- 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH--Hh---
Confidence 5889999997 3588999999999999998776666655433222368999999999999988887644321 00
Q ss_pred EEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcCCCCCC-CccEEEEcCCcc
Q 014314 149 FYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLK-NVRHFILDECDK 201 (427)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~-~~~~~~~~~~-~~~~iVvDEah~ 201 (427)
.........+.+..- ...-|+|...+.. +++.....+. +-.+=|.||...
T Consensus 75 --~~p~~~~L~~q~~~~-~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 --QEPNSKHLRRQLALL-NTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --cCchhHHHHHHHhhc-cCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000111111122221 3567888887765 4444322211 123345777654
No 308
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.075 Score=48.34 Aligned_cols=41 Identities=2% Similarity=0.106 Sum_probs=29.4
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
...+++|+|+||.|.. .....+.+.+..-+....++++|..
T Consensus 106 g~~KV~iI~~a~~m~~--~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTE--AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4678999999999965 5556677777776666655655544
No 309
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.051 Score=50.21 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
...+++||||+|.+.. .-...+.+.++..+....++++|..
T Consensus 140 g~~rVviIDeAd~l~~--~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNR--NAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhcCCCCceEEEEECC
Confidence 5678999999998864 3444566666665555656666533
No 310
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.75 E-value=0.015 Score=45.37 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.9
Q ss_pred EEEEecCCCCcchHH
Q 014314 86 VICQAKSGMGKTAVF 100 (427)
Q Consensus 86 ~li~~~tGsGKT~~~ 100 (427)
+++.||+|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999753
No 311
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.73 E-value=0.063 Score=53.71 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=85.7
Q ss_pred HHHHhCCCCCCchHHHHhHhhhhcCC--eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 59 RAIVDSGFEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 59 ~~l~~~~~~~~~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
..+.....+....-|.+.+..++..+ -+++.|.=|-|||.+.=+++........ ..+++|.+|+.+-+..++..+.+
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHH
Confidence 34555544455555555666666643 4888999999999765555432222221 44899999999998888887765
Q ss_pred HhccCCCceEEEEEcC-cchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHH
Q 014314 137 FSTYLPDIKVAVFYGG-VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (427)
Q Consensus 137 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~ 215 (427)
-+... |.+-.+.... .... ........|-+.+|.... ..-+++|||||=.+- .+.+.++
T Consensus 284 ~l~~l-g~~~~v~~d~~g~~~----~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp-----lplL~~l 343 (758)
T COG1444 284 GLEFL-GYKRKVAPDALGEIR----EVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP-----LPLLHKL 343 (758)
T ss_pred hHHHh-CCcccccccccccee----eecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC-----hHHHHHH
Confidence 44333 3221111111 0000 000011245566665443 114689999998553 3455555
Q ss_pred HHhCCCCceEEEEEccCC
Q 014314 216 FKMTPHDKQVMMFSATLS 233 (427)
Q Consensus 216 ~~~~~~~~~~v~~SAT~~ 233 (427)
....+ .++||.|+.
T Consensus 344 ~~~~~----rv~~sTTIh 357 (758)
T COG1444 344 LRRFP----RVLFSTTIH 357 (758)
T ss_pred HhhcC----ceEEEeeec
Confidence 55433 588888874
No 312
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.72 E-value=0.01 Score=51.47 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|..++|.|++|+|||...+-.+.+.+.. +. ++++++-. +-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHc
Confidence 36679999999999997655555555443 33 77888753 4446666666544
No 313
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.71 E-value=0.038 Score=53.03 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCHH-HHHHHHhCCCCCCch----HHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCCCC---CCeEEEEEe
Q 014314 52 LLKPE-LLRAIVDSGFEHPSE----VQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLC 121 (427)
Q Consensus 52 ~l~~~-l~~~l~~~~~~~~~~----~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 121 (427)
+...+ |...|.++--..++. +|.+-=..+.. ++-++|+|..|||||.+++--+...+.... ....+||+.
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~ 267 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLG 267 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEc
Confidence 34444 556666553333333 23333333343 555899999999999987765444433222 112499999
Q ss_pred CchHHHHHHHHHHHHHh
Q 014314 122 HTRELAYQICHEFERFS 138 (427)
Q Consensus 122 P~~~L~~q~~~~~~~~~ 138 (427)
|.+....-+.+.+-.+.
T Consensus 268 PN~vFleYis~VLPeLG 284 (747)
T COG3973 268 PNRVFLEYISRVLPELG 284 (747)
T ss_pred CcHHHHHHHHHhchhhc
Confidence 99999888887776653
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=95.69 E-value=0.068 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=17.7
Q ss_pred hhcCCeEEEEecCCCCcchHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~ 101 (427)
+..+.++++.||+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4457889999999999996544
No 315
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.042 Score=51.27 Aligned_cols=39 Identities=8% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~--~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSR--HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCH--HHHHHHHHHHhcCCCCeEEEEEc
Confidence 4568999999998864 22233444455545555555544
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.14 Score=48.00 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=62.4
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe-Cc-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC-HT-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
-+++.||+|+|||+...-.+.......+ . ++.++. .+ |..+.+ +++.++... ++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G-~-~V~Lit~Dt~R~aA~e---QLk~yAe~l-gvp~~~-------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMG-K-SVSLYTTDNYRIAAIE---QLKRYADTM-GMPFYP-------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-C-eEEEecccchhhhHHH---HHHHHHHhc-CCCeee--------------
Confidence 4788999999999876554433322211 1 344333 32 333332 344443322 332211
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC---CCceEEEEEccCCc-cHHH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP---HDKQVMMFSATLSK-EIRP 238 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~---~~~~~v~~SAT~~~-~~~~ 238 (427)
+..+..+...+.. .++++|+||=+-...........+..+..... +...++.+|||... .+..
T Consensus 285 --------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 285 --------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred --------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 1112233333321 35678999976654322233444555555432 22456778999876 4444
Q ss_pred HHHHh
Q 014314 239 VCKKF 243 (427)
Q Consensus 239 ~~~~~ 243 (427)
.+..+
T Consensus 352 ~~~~f 356 (432)
T PRK12724 352 VLKAY 356 (432)
T ss_pred HHHHh
Confidence 44444
No 317
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.066 Score=51.55 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.7
Q ss_pred CeEEEEecCCCCcchHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLS 103 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~ 103 (427)
+..++.||+|+|||..+.+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34799999999999865543
No 318
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.64 E-value=0.15 Score=46.73 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=24.6
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..++|++||+|.+.. .....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~--~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTS--DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCH--HHHHHHHHHHhcCCCCCeEEEEe
Confidence 457899999998854 23345555566555556666554
No 319
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.1 Score=47.63 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=68.6
Q ss_pred CchHHHHhHhhhhc-----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHh-ccCC
Q 014314 69 PSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS-TYLP 142 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~ 142 (427)
++|+|+..+..+.. .+..++.||.|.|||..+...+-..+-..+.. . - .| | ..+..++.+. +..|
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~-~-~--~~----C-g~C~~C~~~~~~~Hp 72 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAP-G-H--KP----C-GECMSCHLFGQGSHP 72 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCC-C-C--CC----C-CcCHHHHHHhcCCCC
Confidence 36888888887774 23488999999999976544332222111100 0 0 01 0 0122233332 2224
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
++....-.+..... . +....|-|-....+...+.... .....+++|+|++|.+.. .....+.+.++..+..
T Consensus 73 D~~~~~p~~~~~~~--g----~~~~~I~id~iR~l~~~~~~~p-~~~~~kV~iiEp~~~Ld~--~a~naLLk~LEep~~~ 143 (325)
T PRK08699 73 DFYEITPLSDEPEN--G----RKLLQIKIDAVREIIDNVYLTS-VRGGLRVILIHPAESMNL--QAANSLLKVLEEPPPQ 143 (325)
T ss_pred CEEEEecccccccc--c----ccCCCcCHHHHHHHHHHHhhCc-ccCCceEEEEechhhCCH--HHHHHHHHHHHhCcCC
Confidence 43332211100000 0 0000122222222333222222 235678899999998854 5556666677766655
Q ss_pred ceEEEEEcc
Q 014314 223 KQVMMFSAT 231 (427)
Q Consensus 223 ~~~v~~SAT 231 (427)
..+|++|-.
T Consensus 144 ~~~Ilvth~ 152 (325)
T PRK08699 144 VVFLLVSHA 152 (325)
T ss_pred CEEEEEeCC
Confidence 555554443
No 320
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.054 Score=52.48 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCcchHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~ 104 (427)
+..++.||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998765443
No 321
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.62 E-value=0.071 Score=54.22 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=64.6
Q ss_pred CCCeEEEEECCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-ccccCCCCCCCEEE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gld~~~~~~vi 361 (427)
.+.+++|.+++..-|.+.++.+++ .|+++..++|+++..+|...++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999988877765 3688999999999999999999999999999999964 44567788888877
Q ss_pred E
Q 014314 362 N 362 (427)
Q Consensus 362 ~ 362 (427)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 3
No 322
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.11 Score=50.92 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++||||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~--~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCH--HHHHHHHHHHhCCCCCEEEEEEe
Confidence 5678999999998865 22334555556555566666665
No 323
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.61 E-value=0.081 Score=50.67 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
+.+++.||+|+|||.... ++...+.......+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 459999999999996533 33333332222236676654
No 324
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.05 Score=54.11 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (427)
..++++||||+|.|.. .-...+.+.+..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~--~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCH--HHHHHHHHHHHcCCCCeEEEEe
Confidence 4678999999998865 3344455566665555555554
No 325
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.60 E-value=0.054 Score=48.06 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=24.8
Q ss_pred CccEEEEcCCcccccCC-CcHHHHHHHHHhCCCCc--eEEEE
Q 014314 190 NVRHFILDECDKMLESL-DMRRDVQEIFKMTPHDK--QVMMF 228 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~-~~~~~~~~~~~~~~~~~--~~v~~ 228 (427)
+++++||||+|.++... .-.+.+...++.+.+.. .+|++
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 56789999999987632 23344556666666653 34444
No 326
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.60 E-value=0.07 Score=50.61 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEE
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 120 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 120 (427)
.+++|.||+|+|||... -.++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEE
Confidence 56999999999999763 3344433322222344555
No 327
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.072 Score=52.03 Aligned_cols=39 Identities=8% Similarity=0.230 Sum_probs=26.5
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++||||+|.+.. .....+.+.+...+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~--~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSK--QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccH--HHHHHHHHHHhcCCCCceEEEEE
Confidence 4678999999998865 33445556666655566566655
No 328
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.58 E-value=0.097 Score=51.06 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=63.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEc
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~ 363 (427)
.++++||.+++...+.++++.|++. +..+..+||+++..+|........+|+.+|+|+|..+-. ..++++..||.-
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 3578999999999999999999864 778899999999999998888888999999999965432 456677777743
No 329
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.13 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCeEEEEecCCCCcchHHHHHh
Q 014314 83 GMDVICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~ 104 (427)
++..|++||.|+|||.++-+.+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999998765443
No 330
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.047 Score=51.63 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=23.6
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
+...+++|+||+|.+.. .....+.+.+...+....+|+++
T Consensus 125 ~~~~kvvIIdea~~l~~--~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI--AAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 45678999999998864 22233444455444444444443
No 331
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.55 E-value=0.086 Score=51.27 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
....+++|+||+|.+.. .....+.+.+...+....+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~--~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK--EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH--HHHHHHHHHHhhcCCceEEEEEE
Confidence 35788999999998864 33445566666666666666655
No 332
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.54 E-value=0.11 Score=47.57 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
....+++|||+||.|.. .-...+.+.+..-++...+|++|..
T Consensus 130 ~~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNV--AAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCH--HHHHHHHHHhcCCCcCcEEEEEECC
Confidence 35678999999999965 4455666667766666655655544
No 333
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.53 E-value=0.11 Score=44.16 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=25.4
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhc-C---CeEEEEecCCCCcchHHH
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL-G---MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-~---~~~li~~~tGsGKT~~~~ 101 (427)
+..|+++-=.+.++..+. -.+.++.. + .++++.||+|+|||..+.
T Consensus 20 P~~L~efiGQ~~l~~~l~------------i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLK------------ILIRAAKKRGEALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -SSCCCS-S-HHHHHHHH------------HHHHHHHCTTS---EEEEESSTTSSHHHHHH
T ss_pred CCCHHHccCcHHHHhhhH------------HHHHHHHhcCCCcceEEEECCCccchhHHHH
Confidence 446777765566665443 12222222 2 359999999999997543
No 334
>PRK05973 replicative DNA helicase; Provisional
Probab=95.50 E-value=0.032 Score=48.19 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.++|.. +...-+..|.-++|.|++|+|||+..+..+.+....+. +++|++-- +-..|+.+++..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge---~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR---TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---eEEEEEEe-CCHHHHHHHHHHc
Confidence 456633 34455666778999999999999876655555543322 67777643 3356676666655
No 335
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.061 Score=53.09 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=16.6
Q ss_pred CeEEEEecCCCCcchHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~ 104 (427)
+..|+.||.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358889999999998765544
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.055 Score=53.78 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=24.8
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
+...+++||||+|.+.. .-...+.+.+...+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~--~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST--AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 45678999999998864 22334555555554444455544
No 337
>CHL00181 cbbX CbbX; Provisional
Probab=95.34 E-value=0.13 Score=46.20 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.2
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
+.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999976543
No 338
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.067 Score=49.18 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
....++||+|||+.|.. +-...+.+....-+....+++.+-
T Consensus 107 ~~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 36788999999998865 555666666666666665555543
No 339
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.29 E-value=0.24 Score=42.86 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=32.4
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
-.+.-+++.|++|+|||+..+..+...+..+ .++++++.. +-..+..+.+.++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCC-CCHHHHHHHHHHh
Confidence 3466799999999999976443333333322 267888743 3345555555443
No 340
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.12 Score=51.42 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=25.8
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..++++||||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~--~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLST--NAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCH--HHHHHHHHHHHcCCCCeEEEEEe
Confidence 5678999999998864 33345556666655555555544
No 341
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.25 E-value=0.11 Score=45.51 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=27.0
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
+..|.-++|.|++|+|||...+-.+.......+ .++++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeC
Confidence 344667899999999999765544444443312 26788874
No 342
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.24 E-value=0.17 Score=48.49 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=59.0
Q ss_pred HHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcC
Q 014314 74 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGG 152 (427)
Q Consensus 74 ~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~ 152 (427)
-+.+.-+..|.-++|.|++|+|||...+-.+.......+ .++++++. -.-..|+..++-.... ++....+ .|.
T Consensus 185 D~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSl-Em~~~~l~~Rl~~~~~---~v~~~~~~~~~ 258 (421)
T TIGR03600 185 DRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSL-EMSAEQLGERLLASKS---GINTGNIRTGR 258 (421)
T ss_pred HHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC-CCCHHHHHHHHHHHHc---CCCHHHHhcCC
Confidence 334444444666899999999999765544434332222 15677763 2334444444332211 2222222 222
Q ss_pred cchHH------HHHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 153 VNIKI------HKDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 153 ~~~~~------~~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
.+... ....+... .+.+. |.+.+...+++.......+++||||=.+.+..
T Consensus 259 l~~~~~~~~~~~~~~l~~~--~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 259 FNDSDFNRLLNAVDRLSEK--DLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CCHHHHHHHHHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 22111 11122222 34443 33444443332211122578999999998763
No 343
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.20 E-value=0.032 Score=51.19 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=30.5
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
+..+++++|+|+||||||+. +-+++..+.... +++.+-.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~~---rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQE---RLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCCCC---CEEEECCCccc
Confidence 33478899999999999974 445555554332 66777777766
No 344
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.081 Score=51.95 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||+|.+.. .-...+.+.+...+...-+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~--~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLST--SAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCH--HHHHHHHHHHHhCCCcEEEEEEC
Confidence 3567899999998854 23344555555554444444444
No 345
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.17 E-value=0.6 Score=41.54 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCchHHHHhHhhhhc----CC-eEEEEecCCCCcchHHH
Q 014314 68 HPSEVQHECIPQAIL----GM-DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~-~~li~~~tGsGKT~~~~ 101 (427)
.+++.+.+++..+.. +. .+++.||+|+|||+..-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 345566666665532 23 58899999999997643
No 346
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.11 Score=47.62 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.0
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.++++.||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 359999999999997543
No 347
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.12 E-value=0.067 Score=50.45 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=26.1
Q ss_pred CchHHHHhHhhhhcCCeEEEEecCCCCcchHHH
Q 014314 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~ 101 (427)
+.......+..+..++++++.||+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445556677777789999999999999997653
No 348
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.11 Score=51.95 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.0
Q ss_pred CeEEEEecCCCCcchHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLS 103 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~ 103 (427)
+..|+.||.|+|||..+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 45799999999999865543
No 349
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.08 E-value=0.15 Score=47.99 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=53.1
Q ss_pred HHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 57 l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
++..+.+ .+..+...|.++.-..-.|.. .|.|=.|||||....+-+...-.+++. -++++.+=|+.|+.++...+.+
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd-~~I~~Tfftk~L~s~~r~lv~~ 228 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPD-SRIAFTFFTKILASTMRTLVPE 228 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCC-ceEEEEeehHHHHHHHHHHHHH
Confidence 4444433 344567778877554455655 788999999998654433333333333 3899999999999998888777
Q ss_pred Hh
Q 014314 137 FS 138 (427)
Q Consensus 137 ~~ 138 (427)
|+
T Consensus 229 F~ 230 (660)
T COG3972 229 FF 230 (660)
T ss_pred HH
Confidence 65
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.07 E-value=0.062 Score=45.00 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
....++||+||+|.+.. .....+...+...+...-+|+++
T Consensus 94 ~~~~kviiide~~~l~~--~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE--AAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEE
Confidence 35678999999998864 33344555555544444444443
No 351
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.11 Score=47.18 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccC
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (427)
....+++|||+||.|.. .-...+.+.+..-+....+|++|..+
T Consensus 106 ~~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE--SASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCH--HHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 35678999999999964 55566777777766666666665543
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.02 E-value=0.57 Score=42.72 Aligned_cols=55 Identities=13% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhC------CCCceEEEEEccCCccHHHHHHHh
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMT------PHDKQVMMFSATLSKEIRPVCKKF 243 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~------~~~~~~v~~SAT~~~~~~~~~~~~ 243 (427)
.++++||+|=+-++.........+..+.+.. .+...++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4567899998887654333344555554432 233457788999765544444443
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.00 E-value=0.34 Score=48.90 Aligned_cols=42 Identities=12% Similarity=0.274 Sum_probs=36.5
Q ss_pred cEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc
Q 014314 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 192 ~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (427)
=++|+|+.|.+.+ ......+..+++..|.+..+++.|-+-|.
T Consensus 131 l~LVlDDyHli~~-~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISD-PALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCc-ccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3799999999988 67778899999999999999999888653
No 354
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.00 E-value=0.59 Score=42.05 Aligned_cols=130 Identities=15% Similarity=0.272 Sum_probs=71.1
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe--CchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHHHHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC--HTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHKDLL 162 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 162 (427)
+++.|-.|+|||++.-- +.......+. ++++.+ ..|+-|..+ ++.|.... +..+... .|+..-
T Consensus 142 il~vGVNG~GKTTTIaK--LA~~l~~~g~-~VllaA~DTFRAaAiEQ---L~~w~er~-gv~vI~~~~G~DpA------- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK--LAKYLKQQGK-SVLLAAGDTFRAAAIEQ---LEVWGERL-GVPVISGKEGADPA------- 207 (340)
T ss_pred EEEEecCCCchHhHHHH--HHHHHHHCCC-eEEEEecchHHHHHHHH---HHHHHHHh-CCeEEccCCCCCcH-------
Confidence 78899999999986332 2222222222 555555 334443333 33333332 4444431 122111
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCc------eEEEEEccCCccH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK------QVMMFSATLSKEI 236 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~------~~v~~SAT~~~~~ 236 (427)
.|++...+.. .-+++++|++|=|-++-+..+.-..+.++.+...+.. -++.+=||...+.
T Consensus 208 -----aVafDAi~~A---------kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna 273 (340)
T COG0552 208 -----AVAFDAIQAA---------KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA 273 (340)
T ss_pred -----HHHHHHHHHH---------HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH
Confidence 1111111111 1246678999999988776777778888877766544 2444489988776
Q ss_pred HHHHHHh
Q 014314 237 RPVCKKF 243 (427)
Q Consensus 237 ~~~~~~~ 243 (427)
..-++.|
T Consensus 274 l~QAk~F 280 (340)
T COG0552 274 LSQAKIF 280 (340)
T ss_pred HHHHHHH
Confidence 6555554
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.99 E-value=0.064 Score=48.06 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.0
Q ss_pred CeEEEEecCCCCcchHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~ 104 (427)
+.++++||||+|||+.....+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358889999999997654433
No 356
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.96 E-value=0.13 Score=51.77 Aligned_cols=92 Identities=16% Similarity=0.275 Sum_probs=72.7
Q ss_pred echhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC
Q 014314 270 LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (427)
Q Consensus 270 ~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 346 (427)
.....|.+....++... .++.+||.++.+.....+.+.|+.+ |.++..+|+++++.+|........+|+.+|+|.|.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 34555666666555543 4578999999999999999998765 88999999999999999999999999999999996
Q ss_pred CccccCCCCCCCEEEE
Q 014314 347 LVGRGIDIERVNIVIN 362 (427)
Q Consensus 347 ~~~~Gld~~~~~~vi~ 362 (427)
.+-. .-++++..+|.
T Consensus 305 SAlF-~Pf~~LGLIIv 319 (730)
T COG1198 305 SALF-LPFKNLGLIIV 319 (730)
T ss_pred hhhc-CchhhccEEEE
Confidence 5433 45566776663
No 357
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.96 E-value=0.078 Score=48.58 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.3
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
.+++++|+|+||||||+. +-+++..+.... +++.+=.+.|+
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~~~---ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPAIE---RLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCCCC---eEEEecCCCcc
Confidence 478899999999999974 455566554432 66776666665
No 358
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.11 Score=53.05 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCC-----CCeEE-ecCCCCHHHHHHHHHhhhcCCCcEEEEeCC
Q 014314 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-----FPSIC-IHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (427)
Q Consensus 277 ~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~-----~~~~~-l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 347 (427)
-.+..+.-...++++.+.++|..-+.+.++.|.... ..+.. ||+.++..++...++.|.+|..+|||+|+.
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 344455555567899999999999999999887642 43333 999999999999999999999999999964
No 359
>PRK04195 replication factor C large subunit; Provisional
Probab=94.86 E-value=0.13 Score=50.08 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.7
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
.+.+++.||+|+|||....
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999997643
No 360
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.38 Score=44.75 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=17.7
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccC
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.+++|-|+||+|||.+.- -++.++.
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHH
Confidence 359999999999997643 3444433
No 361
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.1 Score=47.91 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=69.8
Q ss_pred CchHHHHhHhhhhc----C---CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHh-cc
Q 014314 69 PSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS-TY 140 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~ 140 (427)
++|+|...+..+.+ + +-.++.||.|.||+..+...+...+-..+.... -|- .+..++.+. +.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg-------~C~sC~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCG-------HCRGCQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC-------CCHHHHHHHcCC
Confidence 56888888877764 2 348899999999997654432222211111000 011 122233322 22
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC
Q 014314 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220 (427)
Q Consensus 141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~ 220 (427)
.|++....-.++. ..|-|-....+.+.+.... .....+++|||+||.|.. .-...+.+.+..-+
T Consensus 73 HPD~~~i~p~~~~-------------~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp 136 (334)
T PRK07993 73 HPDYYTLTPEKGK-------------SSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTD--AAANALLKTLEEPP 136 (334)
T ss_pred CCCEEEEeccccc-------------ccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCH--HHHHHHHHHhcCCC
Confidence 3454433211110 0121211222222222111 235778999999999965 55666777777766
Q ss_pred CCceEEEEEcc
Q 014314 221 HDKQVMMFSAT 231 (427)
Q Consensus 221 ~~~~~v~~SAT 231 (427)
...-++++|..
T Consensus 137 ~~t~fiL~t~~ 147 (334)
T PRK07993 137 ENTWFFLACRE 147 (334)
T ss_pred CCeEEEEEECC
Confidence 66655655544
No 362
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.79 E-value=0.35 Score=41.90 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=30.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.|..++|.|++|+|||......+.+.+.++. +++++.. .+...++.+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~---~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD---PVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEEc-cCCHHHHHHHHHH
Confidence 4677999999999999765443433333222 6677764 3334555544443
No 363
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.79 E-value=0.13 Score=51.87 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=63.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-ccccCCCCCCCEEE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gld~~~~~~vi 361 (427)
.+.++++.+++..-|.+.++.+++ .|+++..++|+++..+|...++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999988877765 3789999999999999999999999999999999964 44457777888777
Q ss_pred E
Q 014314 362 N 362 (427)
Q Consensus 362 ~ 362 (427)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 3
No 364
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.25 Score=46.44 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
...+++||||+|.+.. .....+.+.+..-+....+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~--~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTE--RAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCH--HHHHHHHHHhhcCCCCCeEEEEECC
Confidence 4678999999999965 3334455555555555544444444
No 365
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.78 E-value=0.1 Score=52.42 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||||.+.. .....+.+.+...+....+|+++
T Consensus 117 g~~KV~IIDEa~~LT~--~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSK--SAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCH--HHHHHHHHHhhcCCCceEEEEEc
Confidence 5778999999998864 23334444455544444444443
No 366
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.76 E-value=0.04 Score=51.98 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=36.1
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
++++.|+||||||.++++|-+.... ..++|+=|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~-----~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP-----GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC-----CCEEEEccchhHHHHHHHHHHH
Confidence 4789999999999998888666542 2678888988888776655544
No 367
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.13 Score=51.33 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.8
Q ss_pred CeEEEEecCCCCcchHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLS 103 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~ 103 (427)
+..|+.||.|+|||.+....
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 44699999999999875543
No 368
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.75 E-value=0.42 Score=39.33 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.8
Q ss_pred EEEEecCCCCcchHHHHHh
Q 014314 86 VICQAKSGMGKTAVFVLST 104 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~ 104 (427)
+++.|++|+|||......+
T Consensus 3 ~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998754433
No 369
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.70 E-value=0.15 Score=42.87 Aligned_cols=52 Identities=12% Similarity=0.294 Sum_probs=25.3
Q ss_pred CccEEEEcCCcccccCCCcH----HHHHHHHHhCCC-CceEEEEEccCCccHHHHHHH
Q 014314 190 NVRHFILDECDKMLESLDMR----RDVQEIFKMTPH-DKQVMMFSATLSKEIRPVCKK 242 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~----~~~~~~~~~~~~-~~~~v~~SAT~~~~~~~~~~~ 242 (427)
.-.++|+||||......... +.....+...+. +.-++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 44689999999987654442 223344444443 34566665554 344444443
No 370
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.69 E-value=0.041 Score=48.33 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCC
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPG 113 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~ 113 (427)
++|.||||||||++ +.+++..++....
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 88999999999976 5667777765543
No 371
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.65 E-value=0.082 Score=44.18 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=27.7
Q ss_pred CchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 69 PSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
+.+-|...+..... +..+++.||||||||+.. -.++..+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~ 50 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIP 50 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcC
Confidence 45667776666665 778999999999999753 33444443
No 372
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.65 E-value=0.25 Score=47.07 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.9
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997543
No 373
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.62 E-value=0.16 Score=45.06 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=58.5
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcC-cchHH--
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG-VNIKI-- 157 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~-~~~~~-- 157 (427)
..|.-++|.|.||.|||...+-.+...+...+ ..+++++.-- -..++..++-.... ++....+..+ .....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm-~~~~l~~R~la~~s---~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEM-SEEELAARLLARLS---GVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGCHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCC-CHHHHHHHHHHHhh---cchhhhhhccccCHHHHH
Confidence 33556899999999999876655555554332 3788888632 22333333332221 2211111112 11111
Q ss_pred ----HHHHHhcCCCcEE-Ee----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 158 ----HKDLLKNECPQIV-VG----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 158 ----~~~~~~~~~~~I~-v~----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
....+... .+. .. |++.+...++........+++||||-.|.+..
T Consensus 91 ~~~~~~~~l~~~--~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 91 RLQAAAEKLSDL--PLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHTS--EEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHhhC--cEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 11122222 333 33 34455554443322236788999999998865
No 374
>PRK10867 signal recognition particle protein; Provisional
Probab=94.62 E-value=0.44 Score=45.25 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=16.5
Q ss_pred eEEEEecCCCCcchHHHHHhhh
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQ 106 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~ 106 (427)
-++++|++|+|||++..-.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3788999999999876544443
No 375
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.61 E-value=0.3 Score=50.64 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999753
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.55 E-value=0.4 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=16.8
Q ss_pred eEEEEecCCCCcchHHHHHhhh
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQ 106 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~ 106 (427)
-++++|++|+|||++..-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3788999999999876544444
No 377
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.49 E-value=1.6 Score=36.11 Aligned_cols=34 Identities=3% Similarity=-0.049 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCCceEEEEEccCCccHHHHHHHhc
Q 014314 211 DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (427)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (427)
.+.+-.+..++..+++++|+.-...+..++.+..
T Consensus 164 vm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 164 VMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 3445566777888999999998887777766543
No 378
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.48 E-value=0.33 Score=43.94 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
+++++||+|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 5999999999999754
No 379
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.47 E-value=0.2 Score=52.50 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC-CccccCCCCCCCEEE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 361 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gld~~~~~~vi 361 (427)
.+.+++|.++|..-|.+.++.+++. ++++..++|..+..++..+++.+.+|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999998887763 56778899999999999999999999999999996 444567788888877
Q ss_pred E
Q 014314 362 N 362 (427)
Q Consensus 362 ~ 362 (427)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 380
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.46 E-value=0.13 Score=47.98 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=31.7
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCC-CCceEEEEEccCCccHH
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEIR 237 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~ 237 (427)
+++++++|.++.+.........+-.++..+. .+.|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5678999999988764344444444444433 45588888877776654
No 381
>PRK10436 hypothetical protein; Provisional
Probab=94.42 E-value=0.062 Score=51.46 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=28.2
Q ss_pred chHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCC
Q 014314 70 SEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 70 ~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
.+.|.+.+..+.. +.-++++||||||||+.. ..++..+..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 4666677766654 445899999999999863 455666543
No 382
>PRK06904 replicative DNA helicase; Validated
Probab=94.42 E-value=0.41 Score=46.26 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=58.1
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-Ec-CcchHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YG-GVNIKI 157 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g-~~~~~~ 157 (427)
+..|.-++|.|.||.|||...+-.+.......+ .++++++.- .-..|+..++-.... ++....+ .| ..+...
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLE-MPAEQIMMRMLASLS---RVDQTKIRTGQNLDQQD 291 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEecc-CCHHHHHHHHHHhhC---CCCHHHhccCCCCCHHH
Confidence 334555889999999999754433333222211 156666543 445666555543322 2222222 22 122222
Q ss_pred H------HHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 158 H------KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 158 ~------~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
+ ...+... +.+.|. |+..+...+++.......+++||||-.+.+..
T Consensus 292 ~~~~~~a~~~l~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQK-PNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 1 1112112 345552 45555544432211123578999999998753
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.40 E-value=0.065 Score=46.75 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=35.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|..++|.|++|+|||...+-.+...+..+. ++++++- .+-..++.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEe-eCCHHHHHHHHHHh
Confidence 3667999999999999866555555443322 7788884 45666777766654
No 384
>PF05729 NACHT: NACHT domain
Probab=94.38 E-value=0.74 Score=37.24 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.9
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-++|.|++|+|||....
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 37899999999997543
No 385
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.37 E-value=0.25 Score=50.20 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.0
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.++++.||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999997543
No 386
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.35 E-value=0.052 Score=53.69 Aligned_cols=78 Identities=24% Similarity=0.411 Sum_probs=56.4
Q ss_pred HhhhcCCCcEEEEeCCccccCCCCCCCEE--------EEcCCCCCchhhhhcccccCCCCCc-cEEEEEe--cCCccHHH
Q 014314 332 KGFKEGNKRILVATDLVGRGIDIERVNIV--------INYDMPDSADTYLHRVGRAGRFGTK-GLAITFV--SSASDSDI 400 (427)
Q Consensus 332 ~~f~~~~~~vlv~T~~~~~Gld~~~~~~v--------i~~~~~~s~~~~~Q~~GR~~R~g~~-g~~~~~~--~~~~~~~~ 400 (427)
..|..|+..|-|-+.+++.|+.+..-+-| |-+.+|||....+|..||++|.++- +--++|+ .-.-+..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 56899999999999999999998764433 4578999999999999999998753 2223333 22344555
Q ss_pred HHHHHHHhc
Q 014314 401 LNQVQARFE 409 (427)
Q Consensus 401 ~~~~~~~~~ 409 (427)
.-.+.++++
T Consensus 931 AS~VAKRLE 939 (1300)
T KOG1513|consen 931 ASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHH
Confidence 555555543
No 387
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.33 E-value=0.5 Score=41.12 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
|.-+++.|++|+|||......+...+..+ .+++++.-.. -..++.+.+.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g---~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQG---KKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCC---CEEEEEEcCC-CHHHHHHHHHHC
Confidence 55689999999999976554444444332 2777777643 345566666554
No 388
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.27 E-value=0.075 Score=51.68 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=37.7
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.++++.||||||||..+++|.+-... + .++|.=|-.+|...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---~--s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---G--SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---C--CEEEEECCCcHHHHHHHHHHHC
Confidence 46999999999999999988775432 1 5788888889887776655543
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.25 E-value=0.098 Score=46.34 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=36.5
Q ss_pred HHHhCCCCCCchHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 60 AIVDSGFEHPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 60 ~l~~~~~~~~~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+.+.|+ .+-|.+.+..++. +..+++.|+||||||.. +..++..+.... .+++.+-...+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~~~--~~iitiEdp~E 119 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNTPE--KNIITVEDPVE 119 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCCCC--CeEEEECCCce
Confidence 3455554 4667777766665 34589999999999975 344555554322 14555544444
No 390
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.24 E-value=0.09 Score=48.82 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
+..++|+||||||||+. +..++..+.......+++.+=...+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEecCch
Confidence 45689999999999975 4455555543222225555544444
No 391
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.16 E-value=0.42 Score=47.80 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=23.9
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEE
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 119 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 119 (427)
+..|..+.+.||+|||||+. +-++........+ .+++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl--~~LL~r~~~~~~G-~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTL--IKLLLRLYDPTSG-EILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccCCCCCC-eEEE
Confidence 44578889999999999863 4444444443222 4555
No 392
>PHA00729 NTP-binding motif containing protein
Probab=94.15 E-value=0.4 Score=40.97 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
+++|.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999653
No 393
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.12 Score=45.90 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.5
Q ss_pred CCeEEEEecCCCCcch
Q 014314 83 GMDVICQAKSGMGKTA 98 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~ 98 (427)
++-+++.||+|+|||.
T Consensus 177 NRliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS 192 (423)
T ss_pred eeEEEEeCCCCCChhH
Confidence 4458899999999995
No 394
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.14 E-value=0.21 Score=47.88 Aligned_cols=74 Identities=9% Similarity=-0.047 Sum_probs=53.2
Q ss_pred CCchHHHHhHhhhhc------C----CeEEEEecCCCCcchHHH-HHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAIL------G----MDVICQAKSGMGKTAVFV-LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~------~----~~~li~~~tGsGKT~~~~-~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.+-|+|.-++-.++- + +.++|..|-+-|||.... +.....+.....+..+.|++|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 578999999998883 1 348999999999996433 22222222223344899999999999999998887
Q ss_pred HhccC
Q 014314 137 FSTYL 141 (427)
Q Consensus 137 ~~~~~ 141 (427)
.....
T Consensus 141 mv~~~ 145 (546)
T COG4626 141 MVKRD 145 (546)
T ss_pred HHHhC
Confidence 76554
No 395
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.12 E-value=0.35 Score=45.12 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.6
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
+..++.||.|+|||....
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997543
No 396
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.25 Score=48.21 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=41.3
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 41 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 41 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
.+....+|++.+-.+++.+.|+.. +.++|-.+.+-. +..-+.+++-||+|+|||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 555667899999778888877754 455665555554 223567999999999999864
No 397
>PRK07004 replicative DNA helicase; Provisional
Probab=94.10 E-value=0.17 Score=48.75 Aligned_cols=117 Identities=15% Similarity=0.063 Sum_probs=55.5
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIH 158 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 158 (427)
+..|.-++|.|.+|+|||...+--+.......+ . .+++++. -.-..|+..++-.... ++....+ .|..+...+
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~~-~-~v~~fSl-EM~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYG-L-PVAVFSM-EMPGTQLAMRMLGSVG---RLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHcC-C-eEEEEeC-CCCHHHHHHHHHHhhc---CCCHHHHhcCCCCHHHH
Confidence 334566899999999999754433333222211 1 5566643 2334455444432211 2222111 222222222
Q ss_pred ------HHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 159 ------KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 159 ------~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
...+.. ..+.|. |+..+....++.......+++||||=.+.+..
T Consensus 284 ~~~~~a~~~l~~--~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 284 PKLTHAVQKMSE--AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 122222 245552 44444443332211223578999999998863
No 398
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.09 E-value=0.57 Score=37.70 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=72.3
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc-----hHHHHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN-----IKIHKD 160 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~ 160 (427)
+.|-.++|.|||.+++--++.....+. +++++.=.+.- ....+...+. ..+++.+.....+.. ......
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~--~~~gE~~~l~-~l~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGG--WKYGELKALE-RLPNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCC--CccCHHHHHH-hCCCcEEEECCCCCccCCCChHHHHH
Confidence 556677899999988877777766544 67774322211 0011222221 113444433221111 000000
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHH
Q 014314 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239 (427)
Q Consensus 161 ~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~ 239 (427)
.. ...+.... .......+++||+||+-..... .--...+..+++..+...-+|+.+-.+|+++...
T Consensus 79 ~a------------~~~~~~a~-~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 79 AA------------AEGWAFAK-EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HH------------HHHHHHHH-HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 00 01111111 1122356889999999877541 2234567778888888888888888888776655
Q ss_pred H
Q 014314 240 C 240 (427)
Q Consensus 240 ~ 240 (427)
+
T Consensus 146 A 146 (159)
T cd00561 146 A 146 (159)
T ss_pred C
Confidence 4
No 399
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.04 E-value=0.36 Score=43.95 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=36.3
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 168 ~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
.|-|-....+.+.+..... ....+++|+|++|.|.. .-...+.+.+..-+ ...+|++|..
T Consensus 103 ~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~--~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE--AAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH--HHHHHHHHHHhCCC-CCeEEEEECC
Confidence 3444444445444443332 25789999999998864 44556667777766 5555555543
No 400
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.03 E-value=0.47 Score=46.99 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=19.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
.|+.+.|.||+|||||+ ++-++.....
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 48889999999999997 3444444443
No 401
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.02 E-value=1.4 Score=46.48 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=99.8
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccC------------------------------CCCCCeEEEE
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE------------------------------PNPGQVTALV 119 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~------------------------------~~~~~~~~li 119 (427)
=--|++-+..+..+-|++=...|=--.|+-.-+.-+..+. +-.++.++.|
T Consensus 729 GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfY 808 (1139)
T COG1197 729 GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFY 808 (1139)
T ss_pred CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEE
Confidence 3447888888888888888888888888754443332110 0012348999
Q ss_pred EeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEE
Q 014314 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196 (427)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVv 196 (427)
|.|..+-..+....++.+. |..++++.||.....+.. ..+.++.++|+|||. + -...+++.+...+||
T Consensus 809 v~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT--I----IEtGIDIPnANTiII 879 (1139)
T COG1197 809 VHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT--I----IETGIDIPNANTIII 879 (1139)
T ss_pred EecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee--e----eecCcCCCCCceEEE
Confidence 9999999999998888876 788999999988765443 345567799999994 2 245678899999999
Q ss_pred cCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 197 DECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 197 DEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
+-||.+. ..++..+..+..+.
T Consensus 880 e~AD~fG-----LsQLyQLRGRVGRS 900 (1139)
T COG1197 880 ERADKFG-----LAQLYQLRGRVGRS 900 (1139)
T ss_pred ecccccc-----HHHHHHhccccCCc
Confidence 9999663 24555665555544
No 402
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.01 E-value=0.095 Score=51.91 Aligned_cols=49 Identities=22% Similarity=0.079 Sum_probs=39.7
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.++++.||||||||..+++|-+..... .++|+=|--++...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~-----S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWED-----SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCC-----CEEEEeCcHHHHHHHHHHHHHC
Confidence 469999999999999999998877532 6788889889988777666554
No 403
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.01 E-value=2.4 Score=40.91 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcch---HHHHHHHhcCCCc
Q 014314 92 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI---KIHKDLLKNECPQ 168 (427)
Q Consensus 92 tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 168 (427)
.+.||+..-++++.+.+..+- .|.+||.+-+.+-|.|++.++.. ++++++.+++|.... .+..+.++.+...
T Consensus 366 vF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~----~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEI----YDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred eeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhh----ccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 467888777776666665553 34789999999999999988872 368999999998654 4556677778889
Q ss_pred EEEechHHHHHHHhcCCCCCCCccEEEEcCCc
Q 014314 169 IVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (427)
Q Consensus 169 I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah 200 (427)
+++||- ++. ...++.++++||-+..-
T Consensus 441 vLicTd-----ll~-RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 441 VLICTD-----LLA-RGIDFKGVNLVINYDFP 466 (593)
T ss_pred EEEehh-----hhh-ccccccCcceEEecCCC
Confidence 999994 222 34789999999997665
No 404
>PRK08006 replicative DNA helicase; Provisional
Probab=93.98 E-value=0.36 Score=46.59 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=57.8
Q ss_pred hhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchH
Q 014314 78 PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIK 156 (427)
Q Consensus 78 ~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 156 (427)
.-+..|.-++|.|.+|.|||..++-.+....... + .++++++.- .-..|+..++-.... ++....+ .|..+..
T Consensus 219 ~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~-g-~~V~~fSlE-M~~~ql~~Rlla~~~---~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 219 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ-D-KPVLIFSLE-MPGEQIMMRMLASLS---RVDQTRIRTGQLDDE 292 (471)
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-C-CeEEEEecc-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHH
Confidence 3333455588999999999975544333332221 1 156666542 334555554443322 2222222 2222222
Q ss_pred HHH------HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 157 IHK------DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 157 ~~~------~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
.+. ..+... ..+.|. |+..+....++.......+++||||=.|.+.
T Consensus 293 e~~~~~~a~~~~~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEK-RNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 221 112122 244443 4445544443221112357899999999875
No 405
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.45 Score=46.15 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=14.5
Q ss_pred eEEEEecCCCCcchHHHH
Q 014314 85 DVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~ 102 (427)
-.++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999976544
No 406
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.90 E-value=0.1 Score=50.57 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=27.9
Q ss_pred chHHHHhHhhhhcCC--eEEEEecCCCCcchHHHHHhhhccCC
Q 014314 70 SEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
.+-|.+.+..+.... -++++||||||||+. +..++..+..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~~ 268 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLNT 268 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccCC
Confidence 566777777766633 378999999999976 3445666543
No 407
>PRK08506 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.45 Score=46.09 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=57.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHH--
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIH-- 158 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~-- 158 (427)
.|.-++|.|.||.|||...+-.+...+.. + .++++++. -.-..|+..++-.... ++....+ .|..+....
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~-g--~~V~~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~ 263 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ-D--KGVAFFSL-EMPAEQLMLRMLSAKT---SIPLQNLRTGDLDDDEWER 263 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc-C--CcEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHH
Confidence 35558999999999997655444444322 2 25666654 3445666555543322 2221111 222222211
Q ss_pred ----HHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 159 ----KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 159 ----~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
...+.+. .+.|. |+..+...+++.......+++||||=.+.+..
T Consensus 264 ~~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 264 LSDACDELSKK--KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHcC--CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 1222222 34432 44555444432211223578999999998763
No 408
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.13 Score=47.20 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=56.0
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (427)
++++.-||+|+|||+.+ ++|+.- .|+...+.+||..-..-.
T Consensus 385 RNilfyGPPGTGKTm~A-----------------------relAr~------------SGlDYA~mTGGDVAPlG~---- 425 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA-----------------------RELARH------------SGLDYAIMTGGDVAPLGA---- 425 (630)
T ss_pred hheeeeCCCCCCchHHH-----------------------HHHHhh------------cCCceehhcCCCccccch----
Confidence 56999999999999753 333321 166666777764211111
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-------CCcHHHHHHHHHhC-CCCceEEEEEccCCc
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-------LDMRRDVQEIFKMT-PHDKQVMMFSATLSK 234 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~-------~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~ 234 (427)
=-|+-...++++..+....+ ++.|||||.++.. ...+..+..++-.. ...+.++++-||-.+
T Consensus 426 -----qaVTkiH~lFDWakkS~rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 426 -----QAVTKIHKLFDWAKKSRRGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 495 (630)
T ss_pred -----HHHHHHHHHHHHHhhcccce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc
Confidence 01222334444444333222 5889999987642 12233444443333 234667888788543
No 409
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.86 E-value=0.26 Score=44.61 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
++.+++.|++|+|||...
T Consensus 156 ~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999653
No 410
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.27 Score=44.96 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.1
Q ss_pred CeEEEEecCCCCcchH
Q 014314 84 MDVICQAKSGMGKTAV 99 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~ 99 (427)
+.+++.||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5699999999999974
No 411
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.21 Score=49.26 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.6
Q ss_pred CeEEEEecCCCCcchHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~ 102 (427)
+..++.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999987554
No 412
>PRK08840 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.63 Score=44.89 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=61.6
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+.+-.+---..+.-+..|.-++|.|.||.|||...+-.+....... + ..++++..- .-..|+..++-.... ++
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~-~-~~v~~fSlE-Ms~~ql~~Rlla~~s---~v 272 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-D-KPVLIFSLE-MPAEQLMMRMLASLS---RV 272 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC-C-CeEEEEecc-CCHHHHHHHHHHhhC---CC
Confidence 33333333334444444466689999999999976543333322221 1 256666543 334555554433221 22
Q ss_pred eEEEE-EcCcchHHHH------HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 145 KVAVF-YGGVNIKIHK------DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 145 ~~~~~-~g~~~~~~~~------~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
....+ .|..+...+. ..+... ..+.|. |...+....++.......+++||||-.|.+.
T Consensus 273 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~-~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 273 DQTKIRTGQLDDEDWARISSTMGILMEK-KNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22111 1222222211 122112 234442 3344443333221122347899999999885
No 413
>PRK05748 replicative DNA helicase; Provisional
Probab=93.77 E-value=0.5 Score=45.63 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHH-
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIH- 158 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~- 158 (427)
..|.-++|.|.||+|||...+-.+.......+. ++++++. -.-..|+..++-.... ++....+ .|.......
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~--~v~~fSl-Ems~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDK--NVAIFSL-EMGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCC--eEEEEeC-CCCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHH
Confidence 335568999999999997655444333222121 5666653 3445555555532221 2222111 222222211
Q ss_pred -----HHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 159 -----KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 159 -----~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
...+.+ ..+.|. |++.+...+++......++++||||=.+.+.
T Consensus 275 ~~~~a~~~l~~--~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 275 KLTIAMGSLSD--APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 112222 234442 4445544333221111257899999999885
No 414
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.77 E-value=0.16 Score=44.00 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.1
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhcc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
++.++|.||-|+|||.. +-.++...
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 36699999999999974 33444444
No 415
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.75 E-value=0.095 Score=43.33 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=25.8
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
+-.++++++.|++|+|||..+...+.+.... + ..+++ ++..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g--~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK-G--YSVLF-ITASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT-T----EEE-EEHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC-C--cceeE-eecCceeccc
Confidence 3347789999999999997644333333332 2 14555 4455665544
No 416
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.75 E-value=0.3 Score=45.75 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=14.8
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
.+++|.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999754
No 417
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.71 E-value=0.22 Score=46.30 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=19.4
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|+.++|.||+|+|||.... .+...+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~-~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ-KIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHH-HHHHhhc
Confidence 37889999999999997533 3444443
No 418
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.67 E-value=0.038 Score=49.48 Aligned_cols=56 Identities=13% Similarity=-0.021 Sum_probs=42.1
Q ss_pred CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
+...++.|..=+.++....-++-.||-|+|||..+...+...+..+.-. ++|.-=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 4466889998888888777788899999999987777777766655433 5555556
No 419
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.42 Score=49.66 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=40.0
Q ss_pred CcccccCCCCCCCCCCHHHHHHHHhCCCC-CCchHHHHhHhhhhcCCeEEEEecCCCCcchH
Q 014314 39 GYVGIHSSGFRDFLLKPELLRAIVDSGFE-HPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 39 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~ 99 (427)
+.......+|++.+....++..|+++-+. -++|-+-.-+ .+..-+.++..||.|+|||+.
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHH
Confidence 33444456899999999999999988432 2223222211 133456699999999999975
No 420
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.63 E-value=0.08 Score=55.14 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=71.5
Q ss_pred CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD 367 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~ 367 (427)
..++|||+.-......+...+...++....-.++ ++-..-+..|.+ --.+++-+...+.|+|+-++.||+..++--
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 3689999988877777777777665544332221 223333445554 233566889999999999999999999999
Q ss_pred CchhhhhcccccCCCCCccE
Q 014314 368 SADTYLHRVGRAGRFGTKGL 387 (427)
Q Consensus 368 s~~~~~Q~~GR~~R~g~~g~ 387 (427)
++..-.|.+||+.|.|++.-
T Consensus 1297 N~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred CchHHHhhhhhhhhcccccc
Confidence 99999999999999997643
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.62 E-value=0.099 Score=46.64 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
.+.+++++|+||||||.. +..++..+... ..+++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc--ccceEEeccccce
Confidence 467899999999999976 45556665554 1277888877765
No 422
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.61 E-value=1.2 Score=41.57 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=25.0
Q ss_pred EEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHH
Q 014314 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (427)
Q Consensus 87 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (427)
++.++.|+|||......++......+....++++....++...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 43 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDI 43 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHH
Confidence 5788999999988777777665555443355666444444444
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.59 E-value=0.086 Score=45.84 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=12.2
Q ss_pred EEEEecCCCCcchH
Q 014314 86 VICQAKSGMGKTAV 99 (427)
Q Consensus 86 ~li~~~tGsGKT~~ 99 (427)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999975
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.59 E-value=0.51 Score=45.41 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=55.5
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHH--
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIH-- 158 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~-- 158 (427)
.|.-++|.|++|+|||...+-.+.......+ ..+++++.- .-..|+..++..... ++....+ .|.......
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlE-m~~~~i~~R~~~~~~---~v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLE-MSAEQLAMRMLSSES---RVDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCc-CCHHHHHHHHHHHhc---CCCHHHhccCCCCHHHHHH
Confidence 3556899999999999765544443332222 156777642 334555544443322 2221111 222222111
Q ss_pred ----HHHHhcCCCcEEE-e----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 159 ----KDLLKNECPQIVV-G----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 159 ----~~~~~~~~~~I~v-~----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
...+.+. .+.+ . |...+...++..... ..+++||||=.+.+..
T Consensus 268 ~~~a~~~l~~~--~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 268 LTSAAGKLSEA--PLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 1222222 3444 2 444554433322111 2478999999988753
No 425
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.41 E-value=1.7 Score=40.49 Aligned_cols=110 Identities=13% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
.+.+.+.|+.|.|||. ++-++......+.+.+ ++.-+...++.+.+..+. |+.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~------------~~~--------- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLR------------GQD--------- 114 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcccccc----ccccHHHHHHHHHHHHHh------------CCC---------
Confidence 4569999999999997 3444433332222212 344566666666666553 100
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHh-CCCCceEEEEEccCCccH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKEI 236 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~-~~~~~~~v~~SAT~~~~~ 236 (427)
+-+ ..+.+.+ .....+|.+||.|.- + ..-...+.+++.. +..+.-+|.+|-++|.++
T Consensus 115 -----~~l----~~va~~l------~~~~~lLcfDEF~V~-D-iaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 115 -----DPL----PQVADEL------AKESRLLCFDEFQVT-D-IADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -----ccH----HHHHHHH------HhcCCEEEEeeeecc-c-hhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 110 0111111 123457999999944 2 2333344444433 334566777777777553
No 426
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.44 Score=47.68 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=26.2
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
+...+++||||+|.+.. .....+.+.+...+...-+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~--~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ--AAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 45788999999998864 33445666666655555444444
No 427
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.36 E-value=0.29 Score=52.53 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-ccccCCCCCCCEEE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gld~~~~~~vi 361 (427)
.+.+++|.++|..-|.+.++.+++. ++++..+++..+..++..+++...+|..+|+|+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999888753 456778999999999999999999999999999964 44456677788776
Q ss_pred E
Q 014314 362 N 362 (427)
Q Consensus 362 ~ 362 (427)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 428
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.36 E-value=0.49 Score=45.50 Aligned_cols=39 Identities=10% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...++||+||+|.+.. .....+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~--~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK--EAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCH--HHHHHHHHHhhcCCCCceEEEEe
Confidence 4678999999998854 22334555555544445455444
No 429
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.35 E-value=0.051 Score=58.65 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=76.3
Q ss_pred CeEEEEECCchhHHHHHHHHHhCC-CCeEEecCCCC-----------HHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVECN-FPSICIHSGMS-----------QEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~-~~~~~l~~~~~-----------~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
-..++|+.....+....+.++... ..+..+.|.+. ...+..++..|.....++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 457899999999988888887652 22222333322 223567888899999999999999999999999
Q ss_pred CCEEEEcCCCCCchhhhhcccccCCCC
Q 014314 357 VNIVINYDMPDSADTYLHRVGRAGRFG 383 (427)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (427)
++.++.++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999998753
No 430
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.34 E-value=0.22 Score=45.81 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 58 LRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
+..|.+.|+ +.+.+...+..+.. +.+++++|+||||||.. +-.++..+.... +++++-.+.|+
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~~~---riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAPDE---RIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCCCC---cEEEECCccee
Confidence 455666665 34566666666555 67899999999999974 333444443322 56677666665
No 431
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.31 E-value=0.13 Score=51.03 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=27.5
Q ss_pred chHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 70 SEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 70 ~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.+-|.+.+..+.. +.-++++||||||||++ +..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 4666666766655 34478999999999976 355666654
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.21 E-value=0.9 Score=40.31 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=18.3
Q ss_pred HhHhhhhcC---CeEEEEecCCCCcchH
Q 014314 75 ECIPQAILG---MDVICQAKSGMGKTAV 99 (427)
Q Consensus 75 ~~i~~~~~~---~~~li~~~tGsGKT~~ 99 (427)
..++.+... +++++.||+|+|||+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 334555542 5789999999999974
No 433
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.15 E-value=0.1 Score=44.05 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=23.7
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
-++|+||||||||+.. ..++..+....+ .+++.+-...+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~-~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKT-HHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCC-cEEEEEcCCcc
Confidence 3789999999999863 444555443322 25555554434
No 434
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.10 E-value=0.27 Score=40.78 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=76.5
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (427)
....+.+..++|.|||.+++--++..+..+. +++++.=.+.-. -..+...+.. .+++.......+..+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~--~~GE~~~l~~-l~~v~~~~~g~~~~~~~~--- 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAW--STGERNLLEF-GGGVEFHVMGTGFTWETQ--- 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCC--ccCHHHHHhc-CCCcEEEECCCCCcccCC---
Confidence 4567999999999999998877777766554 677765333210 0112222221 123333322111111000
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCc--HHHHHHHHHhCCCCceEEEEEccCCccHHHH
Q 014314 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239 (427)
Q Consensus 162 ~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~ 239 (427)
. ..--.......+..... .+.-..+++||+||+-...+ .++ ...+..++...+...-+|+..-.+|+++...
T Consensus 92 ---~-~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~-~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 92 ---D-RERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALK-YGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred ---C-cHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHH-CCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0 00000001111221111 11225678999999987765 343 4567777787777777777777777776555
Q ss_pred HH
Q 014314 240 CK 241 (427)
Q Consensus 240 ~~ 241 (427)
+.
T Consensus 166 AD 167 (191)
T PRK05986 166 AD 167 (191)
T ss_pred Cc
Confidence 43
No 435
>PHA00012 I assembly protein
Probab=93.03 E-value=0.64 Score=41.77 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.0
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCC
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPN 111 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~ 111 (427)
-+|.|..|+|||+.++.-+...+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998887777766654
No 436
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.93 E-value=0.22 Score=50.11 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.++++.||||||||..+++|-+..+.. .++|+=|--++........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~g-----S~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKG-----SVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCC-----CEEEEeCCchHHHHHHHHHHh
Confidence 479999999999999999998776532 678888888887766554443
No 437
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.91 E-value=0.44 Score=43.85 Aligned_cols=41 Identities=12% Similarity=0.313 Sum_probs=28.5
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
....+++||||+|.+.. .-...+.+.+..-+....+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~--~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA--SAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH--HHHHHHHHHhcCCCCCceEEEEeC
Confidence 35678999999998864 445556666776666666666544
No 438
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.89 E-value=1.1 Score=47.60 Aligned_cols=42 Identities=10% Similarity=0.311 Sum_probs=33.0
Q ss_pred cEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCc
Q 014314 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 192 ~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (427)
-+||+|++|.+.+ ......+..++...+....+|+.|-+.|+
T Consensus 123 ~~lvlDD~h~~~~-~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITN-PEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCC-hHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 4799999998864 45566788888888888888888877553
No 439
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.71 E-value=0.25 Score=43.75 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=26.6
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
.|.-++|.|++|+|||...+..+.+.+..+. ++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge---~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGN---PVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC---cEEEEEe
Confidence 4566999999999999766655555444322 6788773
No 440
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.67 E-value=0.97 Score=46.67 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=32.5
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+...|.+++..+.+.+.|... .+..+..++... +...+.+++.||+|+|||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 345677777777777766654 222222222211 122456999999999999753
No 441
>PRK04328 hypothetical protein; Provisional
Probab=92.66 E-value=0.19 Score=44.17 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=34.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|..++|.|++|+|||...+-.+.+.+..+. ++++++ +.+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEE-eeCCHHHHHHHHHHc
Confidence 3566999999999999765554555444332 667777 344555666666655
No 442
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.47 E-value=0.64 Score=44.71 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=54.2
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH---hcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.|-|+--|.++...++.. ++++..+||+.+..+....+ +.+.+.|+|||.- ....+++.++
T Consensus 342 ~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV------AaRGLDi~dV 410 (519)
T KOG0331|consen 342 GKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV------AARGLDVPDV 410 (519)
T ss_pred CcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEccc------ccccCCCccc
Confidence 48999999999999888777663 57899999999877665554 4577899999952 2345677777
Q ss_pred cEEEE
Q 014314 192 RHFIL 196 (427)
Q Consensus 192 ~~iVv 196 (427)
++||-
T Consensus 411 ~lVIn 415 (519)
T KOG0331|consen 411 DLVIN 415 (519)
T ss_pred cEEEe
Confidence 77763
No 443
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.088 Score=46.64 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
..++++.||||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 346999999999999743
No 444
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.39 E-value=0.068 Score=44.09 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=25.8
Q ss_pred CcEEEechHHHHHHHhcCCC--CCCCccEEEEcCCccccc
Q 014314 167 PQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLE 204 (427)
Q Consensus 167 ~~I~v~T~~~l~~~~~~~~~--~~~~~~~iVvDEah~~~~ 204 (427)
.+|+|+++..|++-...... ....-.+|||||||.+.+
T Consensus 120 adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 120 ADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred CCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 59999999998874332221 123446899999998865
No 445
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.39 E-value=1.5 Score=44.41 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=50.5
Q ss_pred CCchHHHHhHhhhhc----CCeEEEEecCCCCcchHHHHHhhhc---cC-----------C-------------------
Q 014314 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQ---TE-----------P------------------- 110 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~---~~-----------~------------------- 110 (427)
+|++.|..-+..++. ..++++..|||+|||++.+...+.. .. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 689999887777775 6779999999999998876655541 10 0
Q ss_pred -CC-----CCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 111 -NP-----GQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 111 -~~-----~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.+ +.++++|-.-|-.-..|+.+++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 00 2356777777777788888888765
No 446
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.22 E-value=0.2 Score=46.38 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
+..++|+||||||||+.. ..++..+..... .+++.+-...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~~-~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNAA-GHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCCC-CEEEEEcCChhh
Confidence 567899999999999763 445554543322 256665554443
No 447
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.11 E-value=0.71 Score=44.37 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
|.-++|.|++|+|||+..+..+...... +.+++|+.- .+...|+..+++++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEc-cccHHHHHHHHHHc
Confidence 4568999999999997654444333322 127888875 34556776666655
No 448
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=92.09 E-value=0.49 Score=44.87 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=55.2
Q ss_pred CeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCC
Q 014314 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKN 190 (427)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~~~~~~~ 190 (427)
.++++|.+.++.-|..++..+.+. ++++..++|+.+....... ++.+..+|+|||.- -...+++.+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------AgRGIDIpn 585 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AGRGIDIPN 585 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cccCCCCCc
Confidence 358999999999999888888776 7899999999887655443 45566799999953 234577888
Q ss_pred ccEEE
Q 014314 191 VRHFI 195 (427)
Q Consensus 191 ~~~iV 195 (427)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 88776
No 449
>PF12846 AAA_10: AAA-like domain
Probab=92.09 E-value=0.13 Score=46.61 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
+.+++|.|+||+|||.... .++......+ ..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g--~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG--PRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC--CCEEEEcCCchH
Confidence 3579999999999997765 4444333322 256777666544
No 450
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.69 Score=44.15 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHhCCCCCCchHHHHhHh----hhh---c-----CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEE
Q 014314 50 DFLLKPELLRAIVDSGFEHPSEVQHECIP----QAI---L-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA 117 (427)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~~~---~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 117 (427)
.|+.+.+-++.....|+-.-.+.-.+.+. .+. . --++++.||.|||||..+. .+......|-+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S~FPFv 567 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSSDFPFV 567 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhcCCCeE
Confidence 46777777777777765422222222221 111 1 1248999999999995322 22222233456
Q ss_pred EEEeCc
Q 014314 118 LVLCHT 123 (427)
Q Consensus 118 lil~P~ 123 (427)
=++.|.
T Consensus 568 KiiSpe 573 (744)
T KOG0741|consen 568 KIISPE 573 (744)
T ss_pred EEeChH
Confidence 666664
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.04 E-value=0.28 Score=44.68 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=24.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+.+++++|+||||||+. +-.++..+.... +++.+-...+
T Consensus 143 ~~~~ili~G~tGsGKTTl-l~al~~~~~~~~---~iv~ied~~E 182 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF-LKSLVDEIPKDE---RIITIEDTRE 182 (308)
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHccCCccc---cEEEEcCccc
Confidence 478899999999999974 233444443222 4455544333
No 452
>PRK08760 replicative DNA helicase; Provisional
Probab=91.99 E-value=0.95 Score=43.88 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHH---
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIH--- 158 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~--- 158 (427)
|.-++|.|.+|.|||...+-.+.......+. ++++++. -.-..|+..++...... +....+ .|..+...+
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~--~V~~fSl-EMs~~ql~~Rl~a~~s~---i~~~~i~~g~l~~~e~~~~ 302 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKK--GVAVFSM-EMSASQLAMRLISSNGR---INAQRLRTGALEDEDWARV 302 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCC--ceEEEec-cCCHHHHHHHHHHhhCC---CcHHHHhcCCCCHHHHHHH
Confidence 5558999999999997655444333222221 5666654 33345666655544322 221111 222222211
Q ss_pred ---HHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 159 ---KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 159 ---~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
...+.+ ..+.|. |++.+...+++... -..+++||||=.+.+.
T Consensus 303 ~~a~~~l~~--~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 303 TGAIKMLKE--TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHhc--CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 112222 234443 44555444332211 1347899999999875
No 453
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.95 E-value=0.2 Score=45.48 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=37.1
Q ss_pred CchHHHHh-HhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 69 PSEVQHEC-IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 69 ~~~~Q~~~-i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
+.+.|..- +-++-.+++++++|+||||||.. +.+++..+.... +++.+=-+.++
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~---rivtIEdt~E~ 182 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE---RIVTIEDTPEL 182 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh---cEEEEeccccc
Confidence 45555444 44444588999999999999974 566666665443 67777777665
No 454
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.89 E-value=0.086 Score=41.69 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=24.8
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
.++.||.|||||..|........ ..++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~-------~~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL-------PGIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc-------CCeEEECHHHHhhhc
Confidence 47889999999988765444333 235556555665554
No 455
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.84 E-value=0.28 Score=43.49 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=36.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|+.++|.|++|||||+-.+-.+.+.+..+. ++++++- .+...++.+.+.++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~-~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVST-EESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEe-cCCHHHHHHHHHHc
Confidence 4678999999999999766655666555522 6777775 45566666666654
No 456
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=91.83 E-value=0.37 Score=49.13 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC-CCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
.|++-|++++.+. ...++|.|..|||||.+..--+...+.... .+..++.++=|+-.|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998866 567899999999999886665555554432 223688888888889999999988875
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.79 E-value=0.5 Score=41.34 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=19.8
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
-.|+.++|.|+.|+|||.. +-.+.....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~ 41 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL-LQSIANAIT 41 (249)
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 3588899999999999964 233444443
No 458
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=91.74 E-value=0.36 Score=48.36 Aligned_cols=48 Identities=23% Similarity=0.100 Sum_probs=36.4
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.++++.||||+|||..+++|-+-.... .++|+=|..|+...+....++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~g-----S~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGG-----PLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCC-----CEEEEeCcHHHHHHHHHHHHH
Confidence 579999999999999999997654321 567777888887766654444
No 459
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.70 E-value=1.5 Score=45.42 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=30.6
Q ss_pred CCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchH
Q 014314 45 SSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~ 99 (427)
...|++++-....++.+.+. .+.++.-++... +..++.+++.||+|+|||+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 34677776555555555443 222222222221 22357799999999999975
No 460
>PRK13764 ATPase; Provisional
Probab=91.58 E-value=0.26 Score=48.65 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=19.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
+++++++||||||||+. +.+++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 67799999999999975 344555554
No 461
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=0.86 Score=45.29 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (427)
+++-+++|+|||-.-+| ......+++.+.....+ +++++
T Consensus 620 lr~P~VLILDEATSALD-aeSE~lVq~aL~~~~~~-rTVlv 658 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALD-AESEYLVQEALDRLMQG-RTVLV 658 (716)
T ss_pred hcCCCEEEEechhhhcc-hhhHHHHHHHHHHhhcC-CeEEE
Confidence 56678899999998887 45556666666555555 34444
No 462
>PRK09165 replicative DNA helicase; Provisional
Probab=91.56 E-value=2.2 Score=41.65 Aligned_cols=115 Identities=13% Similarity=0.104 Sum_probs=56.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCC------------CCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEE-
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN------------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF- 149 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~- 149 (427)
|.-++|.|.||+|||...+-.+....... ..+.+++|++. -.-..|+..++..... ++....+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s---~v~~~~i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS---EISSSKIR 292 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHh
Confidence 55589999999999976544333322110 01226666653 3445666655544322 2222111
Q ss_pred EcCcchHHH------HHHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 150 YGGVNIKIH------KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 150 ~g~~~~~~~------~~~~~~~~~~I~v~-----T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
.|..+.... ...+.. ..+.|. |++.+...+++.... ..+++||||=.|.+..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~--~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK--LPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc--CCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhccC
Confidence 222221111 111222 234443 445554444322111 3578999999998753
No 463
>PRK05636 replicative DNA helicase; Provisional
Probab=91.50 E-value=0.58 Score=45.59 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
|.-++|.|.||+|||...+-
T Consensus 265 G~Liiiaarpg~GKT~~al~ 284 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALD 284 (505)
T ss_pred CceEEEEeCCCCCHHHHHHH
Confidence 44478899999999975443
No 464
>PRK14701 reverse gyrase; Provisional
Probab=91.50 E-value=0.86 Score=50.79 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 347 (427)
.+.+++|.++++.-+.++.+.|+.. +..+..+||+++..++...++.+.+|..+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 456788999999999988888999999999999974
No 465
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.50 E-value=0.71 Score=39.85 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCC---CCCeEEEEEeCch
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 124 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~ 124 (427)
|.-+.|.|++|+|||...+..+....... ....+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56689999999999976554444433222 0113678887654
No 466
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.49 E-value=0.14 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCeEEEEecCCCCcchH
Q 014314 83 GMDVICQAKSGMGKTAV 99 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~ 99 (427)
|...+|.+++|||||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45699999999999974
No 467
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.44 E-value=1.4 Score=40.04 Aligned_cols=109 Identities=11% Similarity=0.147 Sum_probs=61.2
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (427)
+.+-+.|+-|.|||. ++-++-.......+.+ ++.-.-...+.+++..+.+.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~k~R----~HFh~FM~~vH~~l~~l~g~----------------------- 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGERKRR----LHFHRFMARVHQRLHTLQGQ----------------------- 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCcccccc----ccHHHHHHHHHHHHHHHcCC-----------------------
Confidence 568999999999996 5555544443322112 56666667777766665311
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHH-hCCCCceEEEEEccCCccH
Q 014314 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK-MTPHDKQVMMFSATLSKEI 236 (427)
Q Consensus 164 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~-~~~~~~~~v~~SAT~~~~~ 236 (427)
.+.+- .+..- ...+.+++.+||.|.- + ..-.-.+.+++. .+.++..++..|-|.|.++
T Consensus 117 ---~dpl~----~iA~~------~~~~~~vLCfDEF~Vt-D-I~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 117 ---TDPLP----PIADE------LAAETRVLCFDEFEVT-D-IADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ---CCccH----HHHHH------HHhcCCEEEeeeeeec-C-hHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11110 11111 1234567999999932 2 222223333332 3445788888999988764
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.44 E-value=0.38 Score=38.31 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
..+.|.|++|+|||+. +.-+...+...+-. ..-+++|
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k-vgGf~t~ 42 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK-VGGFITP 42 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce-eeeEEee
Confidence 3589999999999975 44455555444322 3445555
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.36 E-value=0.26 Score=42.56 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=24.9
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
.++|.|++|||||.. ++-++..+.... ..+++++|.
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEecC
Confidence 689999999999964 455555544433 256777773
No 470
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.25 E-value=6.2 Score=39.24 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=42.4
Q ss_pred chHHHHhHhhhhc-------CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHH
Q 014314 70 SEVQHECIPQAIL-------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 133 (427)
Q Consensus 70 ~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 133 (427)
|--|..|+-.+.. ..-+-+.|.-|-||+.+.=+.+......+-. .+.|..|+-+=...+++.
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gys--nIyvtSPspeNlkTlFeF 323 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYS--NIYVTSPSPENLKTLFEF 323 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcc--eEEEcCCChHHHHHHHHH
Confidence 5678777765554 2237788999999998876766666554433 678888987765555443
No 471
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.23 E-value=0.18 Score=44.78 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=22.0
Q ss_pred HHhHhhhhcCCeEEEEecCCCCcchHHH
Q 014314 74 HECIPQAILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 74 ~~~i~~~~~~~~~li~~~tGsGKT~~~~ 101 (427)
++++..+..+.++++.||+|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4455556668999999999999997654
No 472
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.20 E-value=1.3 Score=36.12 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=37.2
Q ss_pred CCccEEEEcCCcccccCCCc--HHHHHHHHHhCCCCceEEEEEccCCccHHHHH
Q 014314 189 KNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC 240 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~ 240 (427)
..+++||+||+-...+ .++ ...+..+++..+....+|+..-.+|+.+...+
T Consensus 96 ~~~DlvVLDEi~~A~~-~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALK-YGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHH-CCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 5678999999987665 333 34577778888888778887777787765554
No 473
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=91.17 E-value=0.34 Score=48.69 Aligned_cols=45 Identities=20% Similarity=0.082 Sum_probs=35.1
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 133 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 133 (427)
.++++.||||||||..+++|.+..... .++|+=|-.++..-+...
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~-----S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGH-----SSVITDLKGELWALTAGW 220 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCC-----CEEEEeCcHHHHHHHHHH
Confidence 569999999999999999888765422 678888888886655443
No 474
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.14 E-value=1.9 Score=44.46 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
..+.++.||+|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999764
No 475
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.10 E-value=0.23 Score=46.11 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=20.0
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.+.-++|+||||||||+. +-.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 356799999999999975 345555553
No 476
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.09 E-value=0.55 Score=43.60 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHhHhhhh---cCCeEEEEecCCCCcchH
Q 014314 72 VQHECIPQAI---LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 72 ~Q~~~i~~~~---~~~~~li~~~tGsGKT~~ 99 (427)
.-.+++..+. .|+..+|.||.|+|||..
T Consensus 155 ~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 155 LSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 3334444443 378899999999999964
No 477
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.00 E-value=1.5 Score=43.38 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCCeEEEEECCchhHHHH----HHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-ccccCCCCCCCEEE
Q 014314 287 DFNQVVIFVKSVSRAAEL----NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l----~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gld~~~~~~vi 361 (427)
.+.++.+-.+|.=-|++- .+.|...|+++..+.|.+....|.++++...+|+++++|.|.+ +...+++.++-.||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 456888899996555554 4555566999999999999999999999999999999999976 56788888888877
Q ss_pred E
Q 014314 362 N 362 (427)
Q Consensus 362 ~ 362 (427)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 478
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.98 E-value=0.32 Score=52.52 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=45.5
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCC--CCCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
.+++++|.|..|||||.+...-++..+... -..-.+|+++-|+..+..+..++..-.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 367899999999999988777777766653 233479999999999999998887543
No 479
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.90 E-value=1 Score=46.28 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.8
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
..+.++.||+|+|||...-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 480
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.90 E-value=0.46 Score=51.65 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
.++++|.|+.|||||.+..--++..+..+...-++++|+-|+.-+.++.+++.....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 567999999999999877666666554443344899999999999999888876553
No 481
>PHA02114 hypothetical protein
Probab=90.89 E-value=1.2 Score=31.60 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=52.8
Q ss_pred EEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCC
Q 014314 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167 (427)
Q Consensus 88 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (427)
|.-..|.|||.-++-.+.....+. .++++.. .+--..+.+++..|+...|.+.-.+... .
T Consensus 4 ilrta~~gkt~eaiksa~~aa~~h----~vm~vs~-~~~~t~i~~r~n~fs~enpaiqnry~i~---------------t 63 (127)
T PHA02114 4 ILRTANAGKTQEAIKSAFEAAQHH----EVMFVSD-EEPYTEILRRLNAFSSENPAIQNRYIIS---------------T 63 (127)
T ss_pred EeeecCCcccHHHHHHHHHHhccC----ceEEEcC-CCCHHHHHHHHHHhhccChhhcceeEEE---------------E
Confidence 444578999987766666655443 4555552 3333345566777765544433222211 1
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 168 ~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
.|.=+||+++.++ ..+..++.||+|=--.++
T Consensus 64 ~v~patpemf~dl-----~~fd~~gtivldvn~ams 94 (127)
T PHA02114 64 CVEPATPEMFDDL-----GAFDQYGTIVLDVNYAMS 94 (127)
T ss_pred eecCCCHHHHhhh-----hhHhhcCeEEEEehhhhc
Confidence 3556789988764 245677889999554443
No 482
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.86 E-value=1.3 Score=41.30 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=32.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
|.-+++.|++|+|||+..+..+...... + .+++|+.-. +...|+..+..++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-g--~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-G--GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-C--CeEEEEECC-cCHHHHHHHHHHc
Confidence 4568999999999997654433333222 1 278888754 4456666555554
No 483
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.82 E-value=1.4 Score=43.86 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=55.9
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.|+++..+.++++.+... ++.+..++|+...... ...+.++..+|+|||.- + ...+++.++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv--~----arGIDip~V 326 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV--A----ARGLHIDGV 326 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh--h----hcCCCccCC
Confidence 37999999999999998877654 6789999998776544 34455677899999942 2 245688889
Q ss_pred cEEEEcCC
Q 014314 192 RHFILDEC 199 (427)
Q Consensus 192 ~~iVvDEa 199 (427)
++||.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 98886543
No 484
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.77 E-value=2.3 Score=42.60 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
+-+++.||+|+|||.++
T Consensus 111 ~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 111 RILLITGPSGCGKSTTI 127 (637)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34899999999999754
No 485
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=90.69 E-value=2.2 Score=36.03 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=50.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----c-cccCCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----V-GRGIDIER 356 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gld~~~ 356 (427)
.+.++||.+++...+....+.++.. +..+..++|+.+........ . +..+|+|+|.. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999988887776554 67778899988876554332 2 56789999952 1 22256677
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777763
No 486
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.58 E-value=0.56 Score=44.81 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=54.5
Q ss_pred eEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----cccc----CCCCC
Q 014314 290 QVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VGRG----IDIER 356 (427)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G----ld~~~ 356 (427)
-.||+++|++-|..+.++|... ++++..+.|||....++++++. ..+|+|||+- +..+ =++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3899999999999999999764 8999999999999999888876 5679999972 1111 14566
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
++++|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 777663
No 487
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.56 E-value=1.3 Score=42.61 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=54.5
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.|++++-+..++..++.. ++.+..++|+....... ..+.++..+|+|||. + ....+++.++
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd--~----~~~GiDip~v 314 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD--V----AARGIDIDDV 314 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc--c----cccCccCCCC
Confidence 48999999999999988887653 78899999988765543 445567789999994 1 2346678888
Q ss_pred cEEEE
Q 014314 192 RHFIL 196 (427)
Q Consensus 192 ~~iVv 196 (427)
++||.
T Consensus 315 ~~VI~ 319 (434)
T PRK11192 315 SHVIN 319 (434)
T ss_pred CEEEE
Confidence 88874
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.54 E-value=0.49 Score=40.86 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
|..++|.|++|+|||...+-.+...+..+. ++++++.. +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~---~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGE---KAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC-CCHHHHHHHHHHc
Confidence 556899999999999755544444443322 67787664 4566776666654
No 489
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.53 E-value=2.2 Score=39.93 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.8
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
+..++.||.|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999997543
No 490
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.52 E-value=0.67 Score=40.65 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.4
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
++++.||+|.|||..+.
T Consensus 54 HvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 54 HVLLFGPPGLGKTTLAH 70 (332)
T ss_pred eEEeeCCCCCcHHHHHH
Confidence 59999999999997543
No 491
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.52 E-value=1 Score=40.92 Aligned_cols=53 Identities=15% Similarity=-0.012 Sum_probs=30.3
Q ss_pred CeEEEEecCCCCcchHHHHHhhh-ccCC--CCCCeEEEEEeCchHH-HHHHHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQ-QTEP--NPGQVTALVLCHTREL-AYQICHEFER 136 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~-~~~~--~~~~~~~lil~P~~~L-~~q~~~~~~~ 136 (427)
.-..|.|++|+|||...+..+.. .+.. .....+++|+..--.+ ..++.+.+++
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 44789999999999765544432 2221 1122378888854432 3444444444
No 492
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.44 E-value=0.38 Score=40.38 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=22.7
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG 113 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~ 113 (427)
.|.-+.|+||.|||||+ ++-.++.+.....
T Consensus 27 ~Gevv~iiGpSGSGKST--lLRclN~LE~~~~ 56 (240)
T COG1126 27 KGEVVVIIGPSGSGKST--LLRCLNGLEEPDS 56 (240)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHCCcCCCC
Confidence 46779999999999997 5666766655443
No 493
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.43 E-value=0.67 Score=38.83 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=37.7
Q ss_pred HhHhhhh-cCCeEEEEecCCCCcchHHHHHhhhccCC-------CCCCeEEEEEeCchHHHHHHHHHHHHHhc
Q 014314 75 ECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFERFST 139 (427)
Q Consensus 75 ~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (427)
..++-++ .|.-+++.|++|+|||...+-.+...... ...+.+++++..-.. ..++.+++..+..
T Consensus 23 ~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 23 WLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 3444444 46779999999999997655444443321 113347888877554 5567777776653
No 494
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=90.40 E-value=8.1 Score=35.07 Aligned_cols=16 Identities=38% Similarity=0.408 Sum_probs=14.5
Q ss_pred CCeEEEEecCCCCcch
Q 014314 83 GMDVICQAKSGMGKTA 98 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~ 98 (427)
++++++.||-|||||.
T Consensus 49 snsviiigprgsgkT~ 64 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTI 64 (408)
T ss_pred CCceEEEccCCCCceE
Confidence 5679999999999995
No 495
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=90.40 E-value=0.26 Score=49.32 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHH
Q 014314 55 PELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (427)
Q Consensus 55 ~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (427)
.++.+.+++.+-..+..+=.--++.-...+++++.|.||||||.+ +.-++..+...+. ++||.=|.-+.+.
T Consensus 157 ~~l~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~RGd--rAIIyD~~GeFv~ 227 (732)
T PRK13700 157 KDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQRGD--MVVIYDRSGEFVK 227 (732)
T ss_pred HHHHHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHHcCC--eEEEEeCCCchHH
Confidence 456677777665433333333334444578899999999999986 4556655433322 4555555544433
No 496
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.39 E-value=0.84 Score=47.82 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
..+.++.||+|+|||...-
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3479999999999997643
No 497
>PHA00350 putative assembly protein
Probab=90.37 E-value=2 Score=40.20 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=17.7
Q ss_pred EEEEecCCCCcchHHHH-HhhhccCC
Q 014314 86 VICQAKSGMGKTAVFVL-STLQQTEP 110 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~-~~~~~~~~ 110 (427)
.++.|..|||||+-.+- .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 47899999999987664 34444443
No 498
>PRK05595 replicative DNA helicase; Provisional
Probab=90.36 E-value=0.61 Score=44.92 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
|.-++|.|.||.|||...+-.+.......+ .+++++..- .-..|+..++-.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlE-ms~~~l~~R~~a 251 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLE-MSKEQLAYKLLC 251 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecC-CCHHHHHHHHHH
Confidence 555888999999999765543333221111 256776543 334555555443
No 499
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.35 E-value=6.2 Score=36.21 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=12.3
Q ss_pred EEEEecCCCCcchH
Q 014314 86 VICQAKSGMGKTAV 99 (427)
Q Consensus 86 ~li~~~tGsGKT~~ 99 (427)
+-|.|+.|+|||+.
T Consensus 59 igi~G~~GaGKSTl 72 (332)
T PRK09435 59 IGITGVPGVGKSTF 72 (332)
T ss_pred EEEECCCCCCHHHH
Confidence 77899999999964
No 500
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=90.32 E-value=0.44 Score=47.34 Aligned_cols=68 Identities=18% Similarity=0.047 Sum_probs=50.8
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC---CCCeEEEEEeCchHHHHHHHHHH
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
..+..-|..|+...+..+-.+|++|+|+|||++.+.++-..+.+. ....+++++|=|...+.|....+
T Consensus 377 ~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligi 447 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGI 447 (1025)
T ss_pred eeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHH
Confidence 345567999999988888899999999999988766544443332 22347899999988888875544
Done!