Query 014314
Match_columns 427
No_of_seqs 232 out of 2477
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 09:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2E-64 6.8E-69 480.7 42.4 375 42-421 52-433 (434)
2 1xti_A Probable ATP-dependent 100.0 1.5E-63 5.2E-68 470.9 42.2 383 44-426 6-388 (391)
3 1s2m_A Putative ATP-dependent 100.0 2.5E-60 8.6E-65 450.1 41.2 376 44-425 19-394 (400)
4 2j0s_A ATP-dependent RNA helic 100.0 1.8E-60 6.1E-65 452.5 39.6 371 45-420 36-407 (410)
5 3eiq_A Eukaryotic initiation f 100.0 2.8E-60 9.7E-65 451.9 36.2 374 44-421 38-412 (414)
6 2i4i_A ATP-dependent RNA helic 100.0 5.5E-60 1.9E-64 450.3 36.3 374 42-420 11-407 (417)
7 3fht_A ATP-dependent RNA helic 100.0 6.1E-59 2.1E-63 442.5 38.4 370 45-419 24-403 (412)
8 3pey_A ATP-dependent RNA helic 100.0 2.8E-58 9.4E-63 435.5 38.5 366 45-417 4-379 (395)
9 1hv8_A Putative ATP-dependent 100.0 7.3E-57 2.5E-61 421.5 40.9 361 44-416 4-365 (367)
10 3fmp_B ATP-dependent RNA helic 100.0 1.6E-59 5.6E-64 453.9 21.7 369 45-418 91-469 (479)
11 1fuu_A Yeast initiation factor 100.0 5.1E-59 1.7E-63 440.4 20.9 371 44-420 19-390 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 8.5E-56 2.9E-60 436.6 33.2 361 53-415 28-417 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 1.5E-55 5.2E-60 434.8 33.2 361 53-415 79-468 (563)
14 2z0m_A 337AA long hypothetical 100.0 4.3E-54 1.5E-58 398.0 34.3 336 53-410 1-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 1.2E-55 4E-60 428.0 21.1 364 48-418 121-493 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 6.2E-53 2.1E-57 412.4 33.5 335 47-395 22-374 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 3.4E-52 1.1E-56 403.5 30.9 332 46-395 2-343 (523)
18 3oiy_A Reverse gyrase helicase 100.0 9.3E-51 3.2E-55 385.7 25.2 328 56-409 9-376 (414)
19 2zj8_A DNA helicase, putative 100.0 1.1E-48 3.9E-53 395.1 27.0 349 47-416 2-405 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 9.4E-48 3.2E-52 388.7 33.1 336 45-396 7-409 (715)
21 3l9o_A ATP-dependent RNA helic 100.0 2.4E-48 8.4E-53 402.7 26.0 339 46-404 162-606 (1108)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-48 4.7E-53 393.4 23.0 334 47-396 2-389 (702)
23 2ykg_A Probable ATP-dependent 100.0 7.6E-49 2.6E-53 396.7 19.2 334 58-395 3-516 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 3.6E-47 1.2E-51 375.3 26.6 329 65-397 4-510 (556)
25 3tbk_A RIG-I helicase domain; 100.0 2.8E-47 9.5E-52 376.1 25.7 325 68-397 4-509 (555)
26 4a2q_A RIG-I, retinoic acid in 100.0 5.3E-47 1.8E-51 386.5 27.1 331 63-397 243-751 (797)
27 2xgj_A ATP-dependent RNA helic 100.0 9.4E-46 3.2E-50 380.3 34.5 321 63-404 82-508 (1010)
28 4a2w_A RIG-I, retinoic acid in 100.0 1.9E-46 6.6E-51 385.9 28.2 330 64-397 244-751 (936)
29 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-46 7.1E-51 388.2 26.2 320 64-409 75-503 (1104)
30 1wp9_A ATP-dependent RNA helic 100.0 1.1E-45 3.8E-50 359.1 29.6 324 68-399 9-479 (494)
31 1tf5_A Preprotein translocase 100.0 2.6E-44 9E-49 351.5 30.3 323 63-397 79-547 (844)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-45 4.9E-50 382.4 17.9 325 58-410 47-468 (1054)
33 4a4z_A Antiviral helicase SKI2 100.0 5.9E-44 2E-48 367.0 29.5 322 65-404 37-502 (997)
34 4gl2_A Interferon-induced heli 100.0 2.1E-45 7.3E-50 371.7 16.9 321 68-393 7-517 (699)
35 4f92_B U5 small nuclear ribonu 100.0 3.4E-43 1.2E-47 376.2 29.3 335 53-397 911-1310(1724)
36 1gm5_A RECG; helicase, replica 100.0 8.9E-44 3E-48 354.7 20.2 318 55-394 356-696 (780)
37 2eyq_A TRCF, transcription-rep 100.0 8.4E-42 2.9E-46 356.1 34.5 324 50-395 585-922 (1151)
38 2fsf_A Preprotein translocase 100.0 2.3E-42 7.8E-47 336.9 27.4 320 65-397 72-585 (853)
39 4f92_B U5 small nuclear ribonu 100.0 4.8E-43 1.6E-47 375.1 24.8 331 65-405 76-483 (1724)
40 1nkt_A Preprotein translocase 100.0 1.5E-41 5.3E-46 331.3 30.5 322 64-397 108-619 (922)
41 2oca_A DAR protein, ATP-depend 100.0 2.1E-42 7E-47 337.1 21.6 311 67-393 112-453 (510)
42 2whx_A Serine protease/ntpase/ 100.0 1.9E-43 6.4E-48 346.4 11.6 326 51-419 155-504 (618)
43 2jlq_A Serine protease subunit 100.0 4.1E-42 1.4E-46 327.7 18.4 287 65-394 1-310 (451)
44 2fwr_A DNA repair protein RAD2 100.0 3.8E-42 1.3E-46 331.9 14.9 294 68-396 93-455 (472)
45 1yks_A Genome polyprotein [con 100.0 2.6E-43 9E-48 334.3 4.4 302 79-422 4-328 (440)
46 2xau_A PRE-mRNA-splicing facto 100.0 5E-41 1.7E-45 337.3 20.5 332 45-394 71-442 (773)
47 3o8b_A HCV NS3 protease/helica 100.0 3.2E-41 1.1E-45 327.3 18.3 277 68-397 217-516 (666)
48 2wv9_A Flavivirin protease NS2 100.0 2E-41 6.8E-46 334.0 13.9 318 60-419 202-559 (673)
49 2z83_A Helicase/nucleoside tri 100.0 6.1E-40 2.1E-44 313.1 17.4 278 76-395 14-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 1.6E-38 5.4E-43 301.0 19.4 269 83-393 2-289 (431)
51 1t6n_A Probable ATP-dependent 100.0 1.1E-37 3.8E-42 269.6 22.7 216 36-251 4-219 (220)
52 3h1t_A Type I site-specific re 100.0 1.2E-38 4E-43 315.5 18.0 299 68-384 178-545 (590)
53 3dmq_A RNA polymerase-associat 100.0 5.4E-38 1.8E-42 323.6 20.4 320 67-392 152-610 (968)
54 3fe2_A Probable ATP-dependent 100.0 1.1E-36 3.9E-41 266.8 23.2 212 41-255 24-240 (242)
55 1vec_A ATP-dependent RNA helic 100.0 2.9E-36 1E-40 258.0 24.2 203 46-250 3-205 (206)
56 1z63_A Helicase of the SNF2/RA 100.0 1.9E-36 6.6E-41 294.2 25.8 309 68-395 37-453 (500)
57 3fmo_B ATP-dependent RNA helic 100.0 1.5E-36 5.2E-41 273.4 22.3 205 45-253 91-298 (300)
58 2oxc_A Probable ATP-dependent 100.0 3.1E-36 1.1E-40 262.0 21.9 209 41-251 19-227 (230)
59 3rc3_A ATP-dependent RNA helic 100.0 3E-36 1E-40 296.1 22.8 291 73-407 145-455 (677)
60 3bor_A Human initiation factor 100.0 2.3E-36 8E-41 263.9 19.6 207 44-252 28-234 (237)
61 3ber_A Probable ATP-dependent 100.0 3.9E-36 1.3E-40 263.9 21.1 205 45-252 42-247 (249)
62 3iuy_A Probable ATP-dependent 100.0 5.7E-36 2E-40 260.2 20.0 207 41-251 14-227 (228)
63 1q0u_A Bstdead; DEAD protein, 100.0 5.2E-36 1.8E-40 258.7 19.3 206 46-253 4-212 (219)
64 1qde_A EIF4A, translation init 100.0 1.5E-35 5.2E-40 256.9 21.4 207 44-254 12-218 (224)
65 3jux_A Protein translocase sub 100.0 3.6E-34 1.2E-38 273.7 29.9 318 65-397 73-589 (822)
66 3mwy_W Chromo domain-containin 100.0 7.3E-35 2.5E-39 296.2 26.9 333 68-410 236-700 (800)
67 2gxq_A Heat resistant RNA depe 100.0 1.1E-34 3.7E-39 248.5 22.0 201 47-252 2-205 (207)
68 1z3i_X Similar to RAD54-like; 100.0 4.6E-33 1.6E-37 276.2 34.7 334 68-410 55-544 (644)
69 3ly5_A ATP-dependent RNA helic 100.0 8.2E-35 2.8E-39 257.5 19.5 201 45-248 51-258 (262)
70 1wrb_A DJVLGB; RNA helicase, D 100.0 1E-34 3.4E-39 256.4 18.3 209 45-256 22-243 (253)
71 2pl3_A Probable ATP-dependent 100.0 3.1E-34 1.1E-38 250.6 21.1 205 45-253 24-233 (236)
72 3dkp_A Probable ATP-dependent 100.0 2.7E-34 9.2E-39 252.5 17.3 211 44-255 23-243 (245)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-33 4.6E-38 288.6 23.8 321 68-405 271-717 (1038)
74 1t5i_A C_terminal domain of A 100.0 4.3E-31 1.5E-35 217.9 16.7 166 261-426 4-169 (172)
75 2ipc_A Preprotein translocase 100.0 1.5E-28 5.1E-33 239.4 31.0 130 64-203 76-215 (997)
76 1c4o_A DNA nucleotide excision 100.0 1.1E-28 3.7E-33 244.5 26.8 108 287-395 438-550 (664)
77 2hjv_A ATP-dependent RNA helic 100.0 7.6E-29 2.6E-33 202.8 19.9 156 260-416 7-162 (163)
78 1fuk_A Eukaryotic initiation f 100.0 1E-28 3.6E-33 202.6 20.4 158 262-420 3-161 (165)
79 2p6n_A ATP-dependent RNA helic 100.0 2.2E-29 7.5E-34 210.8 15.6 178 242-421 10-187 (191)
80 2d7d_A Uvrabc system protein B 100.0 1.1E-27 3.9E-32 237.1 27.7 141 278-419 434-588 (661)
81 2rb4_A ATP-dependent RNA helic 100.0 2.2E-28 7.7E-33 202.6 19.0 158 260-418 5-169 (175)
82 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.9E-28 1E-32 203.1 15.9 161 259-420 16-177 (185)
83 3eaq_A Heat resistant RNA depe 100.0 9.3E-28 3.2E-32 204.8 17.9 153 264-417 7-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 6E-27 2.1E-31 208.8 18.3 155 263-418 3-157 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 5.1E-28 1.8E-32 199.3 0.0 153 264-417 5-158 (170)
86 2vl7_A XPD; helicase, unknown 99.9 3.6E-24 1.2E-28 208.1 15.8 102 287-394 383-520 (540)
87 3b6e_A Interferon-induced heli 99.9 9.1E-25 3.1E-29 188.0 8.9 164 65-231 30-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.9 5.5E-21 1.9E-25 186.5 30.0 312 68-396 3-532 (551)
89 3llm_A ATP-dependent RNA helic 99.9 8.7E-23 3E-27 177.4 13.3 170 65-247 58-231 (235)
90 1rif_A DAR protein, DNA helica 99.9 8.3E-23 2.8E-27 182.8 10.3 154 68-236 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 2.9E-20 9.8E-25 161.2 16.1 138 68-235 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1.1E-19 3.7E-24 178.6 20.0 316 68-394 3-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.2E-20 1.4E-24 162.7 14.5 136 271-406 93-236 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 1.1E-09 3.8E-14 107.5 9.2 146 70-231 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.5 2.3E-07 7.9E-12 92.2 8.5 67 68-137 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.4 2.9E-06 9.8E-11 83.8 14.6 69 67-137 179-247 (624)
97 3hgt_A HDA1 complex subunit 3; 98.4 5.2E-06 1.8E-10 73.2 13.1 131 272-407 107-249 (328)
98 2xzl_A ATP-dependent helicase 98.4 2.9E-06 9.8E-11 85.7 13.1 69 67-137 359-427 (802)
99 2wjy_A Regulator of nonsense t 98.3 5.3E-06 1.8E-10 83.7 14.4 68 67-136 355-422 (800)
100 3e1s_A Exodeoxyribonuclease V, 98.3 1.5E-06 5.2E-11 84.5 9.6 126 68-230 189-314 (574)
101 3lfu_A DNA helicase II; SF1 he 98.3 4.6E-05 1.6E-09 75.9 20.7 81 67-149 8-90 (647)
102 3upu_A ATP-dependent DNA helic 98.3 2.6E-06 8.9E-11 81.0 10.8 139 62-229 19-162 (459)
103 2o0j_A Terminase, DNA packagin 97.7 0.00035 1.2E-08 63.9 12.5 74 68-142 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.6 0.0013 4.3E-08 64.5 14.8 74 68-142 163-236 (592)
105 3vkw_A Replicase large subunit 97.3 0.00077 2.6E-08 62.4 8.5 107 85-231 163-269 (446)
106 2orw_A Thymidine kinase; TMTK, 97.2 0.00069 2.3E-08 55.4 7.2 39 83-124 3-41 (184)
107 3ec2_A DNA replication protein 97.1 0.0014 4.8E-08 53.3 7.4 18 83-100 38-55 (180)
108 1uaa_A REP helicase, protein ( 97.1 0.00048 1.7E-08 68.8 5.3 82 68-151 2-86 (673)
109 2b8t_A Thymidine kinase; deoxy 97.0 0.00052 1.8E-08 57.7 4.2 91 83-203 12-102 (223)
110 1xx6_A Thymidine kinase; NESG, 97.0 0.0013 4.4E-08 53.9 6.3 39 83-124 8-46 (191)
111 1a5t_A Delta prime, HOLB; zinc 96.9 0.0032 1.1E-07 56.9 9.4 34 69-102 3-43 (334)
112 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0012 4.1E-08 66.3 6.9 83 67-151 10-94 (724)
113 2j9r_A Thymidine kinase; TK1, 96.9 0.00094 3.2E-08 55.3 4.9 40 83-125 28-67 (214)
114 3u4q_A ATP-dependent helicase/ 96.7 0.0022 7.4E-08 68.4 7.0 69 68-138 10-81 (1232)
115 2orv_A Thymidine kinase; TP4A 96.7 0.0018 6.3E-08 54.1 4.9 40 83-125 19-58 (234)
116 2zpa_A Uncharacterized protein 96.5 0.0079 2.7E-07 58.7 9.1 113 68-233 175-289 (671)
117 3te6_A Regulatory protein SIR3 96.5 0.011 3.7E-07 52.6 9.2 19 83-101 45-63 (318)
118 2chg_A Replication factor C sm 96.5 0.017 5.8E-07 48.3 10.3 40 189-230 101-140 (226)
119 3kl4_A SRP54, signal recogniti 96.3 0.019 6.6E-07 53.3 10.0 56 189-244 178-235 (433)
120 3n70_A Transport activator; si 96.3 0.014 4.6E-07 45.5 7.8 38 192-231 78-115 (145)
121 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0028 9.6E-08 52.4 3.7 40 83-125 28-67 (219)
122 1l8q_A Chromosomal replication 96.2 0.012 4.2E-07 52.8 8.2 18 83-100 37-54 (324)
123 2kjq_A DNAA-related protein; s 96.2 0.0071 2.4E-07 47.4 5.8 18 82-99 35-52 (149)
124 3u61_B DNA polymerase accessor 96.2 0.041 1.4E-06 49.3 11.4 39 190-229 105-143 (324)
125 1w4r_A Thymidine kinase; type 96.2 0.0082 2.8E-07 48.9 5.9 38 83-123 20-57 (195)
126 3bos_A Putative DNA replicatio 96.1 0.003 1E-07 53.9 3.3 19 82-100 51-69 (242)
127 2z4s_A Chromosomal replication 96.0 0.028 9.7E-07 52.7 9.4 18 83-100 130-147 (440)
128 2gno_A DNA polymerase III, gam 95.9 0.02 6.7E-07 50.8 7.7 39 189-229 81-119 (305)
129 3dm5_A SRP54, signal recogniti 95.6 0.033 1.1E-06 51.7 8.2 132 84-243 101-235 (443)
130 1sxj_E Activator 1 40 kDa subu 95.6 0.11 3.9E-06 46.9 11.8 43 189-233 133-175 (354)
131 3eie_A Vacuolar protein sortin 95.3 0.023 7.8E-07 50.9 5.9 51 44-100 13-68 (322)
132 1d2n_A N-ethylmaleimide-sensit 95.3 0.11 3.7E-06 45.1 10.1 18 84-101 65-82 (272)
133 1sxj_D Activator 1 41 kDa subu 95.2 0.028 9.7E-07 50.9 6.4 40 189-230 132-171 (353)
134 3syl_A Protein CBBX; photosynt 95.2 0.014 4.7E-07 52.0 4.0 18 83-100 67-84 (309)
135 1fnn_A CDC6P, cell division co 95.1 0.042 1.4E-06 50.5 7.3 35 85-121 46-80 (389)
136 2v1u_A Cell division control p 95.0 0.043 1.5E-06 50.4 7.0 18 83-100 44-61 (387)
137 1gm5_A RECG; helicase, replica 95.0 0.058 2E-06 54.3 8.2 75 288-362 417-496 (780)
138 1iqp_A RFCS; clamp loader, ext 94.8 0.073 2.5E-06 47.5 7.9 39 189-229 109-147 (327)
139 3pfi_A Holliday junction ATP-d 94.6 0.36 1.2E-05 43.3 11.8 47 46-100 26-72 (338)
140 2qby_B CDC6 homolog 3, cell di 94.5 0.083 2.8E-06 48.4 7.6 18 83-100 45-62 (384)
141 1njg_A DNA polymerase III subu 94.2 0.23 7.9E-06 41.8 9.4 39 190-230 126-164 (250)
142 1jr3_A DNA polymerase III subu 94.2 0.35 1.2E-05 43.9 11.0 39 189-229 118-156 (373)
143 3oiy_A Reverse gyrase helicase 94.1 0.14 4.6E-06 47.6 8.0 76 287-362 63-145 (414)
144 2rb4_A ATP-dependent RNA helic 94.0 0.19 6.6E-06 40.2 7.9 71 116-197 36-109 (175)
145 1sxj_B Activator 1 37 kDa subu 94.0 0.084 2.9E-06 47.0 6.2 38 190-229 107-144 (323)
146 2qby_A CDC6 homolog 1, cell di 93.9 0.075 2.6E-06 48.6 5.8 18 83-100 45-62 (386)
147 1hqc_A RUVB; extended AAA-ATPa 93.8 0.65 2.2E-05 41.2 11.7 18 83-100 38-55 (324)
148 1sxj_C Activator 1 40 kDa subu 93.7 0.15 5E-06 46.0 7.3 39 189-229 109-147 (340)
149 2p6n_A ATP-dependent RNA helic 93.6 0.64 2.2E-05 37.8 10.5 71 116-197 56-129 (191)
150 3pvs_A Replication-associated 93.5 0.11 3.6E-06 48.8 6.2 17 84-100 51-67 (447)
151 3hjh_A Transcription-repair-co 93.4 0.32 1.1E-05 45.9 9.2 74 277-363 372-445 (483)
152 1g5t_A COB(I)alamin adenosyltr 93.3 0.13 4.5E-06 41.8 5.6 139 84-240 29-171 (196)
153 2hjv_A ATP-dependent RNA helic 93.2 0.45 1.6E-05 37.4 8.7 73 116-199 37-112 (163)
154 1fuk_A Eukaryotic initiation f 93.1 0.76 2.6E-05 36.2 9.9 88 96-199 17-107 (165)
155 2q6t_A DNAB replication FORK h 93.1 0.22 7.7E-06 46.6 7.7 52 81-135 198-249 (444)
156 3hu3_A Transitional endoplasmi 93.0 0.22 7.6E-06 47.2 7.6 18 83-100 238-255 (489)
157 2r6a_A DNAB helicase, replicat 92.9 0.23 7.8E-06 46.7 7.5 52 80-134 200-251 (454)
158 1t5i_A C_terminal domain of A 92.6 1.4 4.9E-05 34.9 11.0 90 94-199 16-108 (172)
159 4b4t_M 26S protease regulatory 92.4 0.054 1.8E-06 50.3 2.4 54 44-100 176-232 (434)
160 3co5_A Putative two-component 92.0 0.099 3.4E-06 40.3 3.2 19 81-99 25-43 (143)
161 2fna_A Conserved hypothetical 92.0 4.8 0.00016 35.8 15.1 52 174-229 124-177 (357)
162 3eaq_A Heat resistant RNA depe 91.9 0.66 2.3E-05 38.4 8.4 70 116-196 33-105 (212)
163 2px0_A Flagellar biosynthesis 91.9 0.32 1.1E-05 42.7 6.7 20 83-102 105-124 (296)
164 2chq_A Replication factor C sm 91.8 0.08 2.8E-06 47.0 2.8 42 46-100 14-55 (319)
165 4b4t_J 26S protease regulatory 91.6 0.061 2.1E-06 49.2 1.7 54 44-100 143-199 (405)
166 3i5x_A ATP-dependent RNA helic 91.4 1 3.5E-05 43.6 10.4 77 115-199 340-419 (563)
167 2eyq_A TRCF, transcription-rep 91.4 0.63 2.2E-05 49.2 9.3 77 286-362 650-731 (1151)
168 2jgn_A DBX, DDX3, ATP-dependen 91.2 0.77 2.6E-05 37.0 7.9 89 93-196 29-120 (185)
169 4a1f_A DNAB helicase, replicat 91.0 0.19 6.6E-06 44.9 4.3 52 80-135 43-94 (338)
170 2i4i_A ATP-dependent RNA helic 91.0 1.4 4.9E-05 40.5 10.6 71 115-196 277-350 (417)
171 3ber_A Probable ATP-dependent 91.0 1.3 4.6E-05 37.5 9.6 72 287-362 110-192 (249)
172 4ddu_A Reverse gyrase; topoiso 90.9 0.44 1.5E-05 50.1 7.4 76 287-362 120-202 (1104)
173 3sqw_A ATP-dependent RNA helic 90.4 1.5 5E-05 42.7 10.4 78 115-200 289-369 (579)
174 1w5s_A Origin recognition comp 90.4 0.44 1.5E-05 43.9 6.4 17 84-100 51-69 (412)
175 2d7d_A Uvrabc system protein B 90.2 5.7 0.0002 39.2 14.5 76 116-202 447-525 (661)
176 1p9r_A General secretion pathw 90.0 0.33 1.1E-05 44.9 5.0 39 71-110 153-193 (418)
177 1oyw_A RECQ helicase, ATP-depe 89.9 0.76 2.6E-05 44.1 7.7 59 288-346 65-123 (523)
178 1t6n_A Probable ATP-dependent 89.7 1.3 4.4E-05 36.7 8.2 71 289-362 83-164 (220)
179 4b4t_L 26S protease subunit RP 89.7 0.12 4.2E-06 47.9 1.9 54 44-100 176-232 (437)
180 3e70_C DPA, signal recognition 89.7 3.1 0.00011 36.9 11.0 53 191-243 212-264 (328)
181 3cf2_A TER ATPase, transitiona 89.5 0.35 1.2E-05 48.6 5.2 18 83-100 238-255 (806)
182 3cmu_A Protein RECA, recombina 89.4 0.6 2E-05 51.6 7.1 40 83-125 1427-1466(2050)
183 3cf0_A Transitional endoplasmi 89.3 0.14 4.7E-06 45.3 1.9 55 43-100 9-66 (301)
184 4b4t_H 26S protease regulatory 89.2 0.17 5.8E-06 47.1 2.5 54 44-100 204-260 (467)
185 2w58_A DNAI, primosome compone 89.2 0.55 1.9E-05 38.4 5.4 17 84-100 55-71 (202)
186 2v1x_A ATP-dependent DNA helic 89.1 0.76 2.6E-05 44.8 7.2 59 288-346 84-144 (591)
187 3b85_A Phosphate starvation-in 88.9 0.49 1.7E-05 39.1 4.9 34 66-99 5-38 (208)
188 2oap_1 GSPE-2, type II secreti 88.8 0.53 1.8E-05 44.8 5.7 47 59-108 237-284 (511)
189 4b4t_I 26S protease regulatory 88.7 0.24 8.2E-06 45.6 3.1 54 44-100 177-233 (437)
190 2dr3_A UPF0273 protein PH0284; 88.7 0.31 1E-05 41.3 3.7 50 82-135 22-71 (247)
191 3h4m_A Proteasome-activating n 88.6 0.18 6.1E-06 44.0 2.2 53 45-100 13-68 (285)
192 1xwi_A SKD1 protein; VPS4B, AA 88.4 0.46 1.6E-05 42.3 4.7 53 44-100 7-62 (322)
193 3io5_A Recombination and repai 88.3 0.61 2.1E-05 41.1 5.2 42 85-127 30-71 (333)
194 2gza_A Type IV secretion syste 87.9 0.47 1.6E-05 43.0 4.5 19 81-99 173-191 (361)
195 2pt7_A CAG-ALFA; ATPase, prote 87.6 0.51 1.7E-05 42.2 4.5 18 82-99 170-187 (330)
196 3pey_A ATP-dependent RNA helic 87.5 9.5 0.00032 34.4 13.3 76 115-201 244-322 (395)
197 3fe2_A Probable ATP-dependent 87.5 2.1 7.2E-05 36.0 8.2 71 288-362 102-182 (242)
198 3lda_A DNA repair protein RAD5 87.3 1.6 5.6E-05 40.0 7.7 41 83-123 178-221 (400)
199 3i32_A Heat resistant RNA depe 87.3 1.5 5E-05 38.5 7.2 72 116-198 30-104 (300)
200 3vkg_A Dynein heavy chain, cyt 87.2 0.95 3.2E-05 52.4 7.2 78 53-131 873-954 (3245)
201 4b4t_K 26S protease regulatory 87.2 0.19 6.6E-06 46.5 1.5 54 44-100 167-223 (428)
202 1e9r_A Conjugal transfer prote 86.9 0.4 1.4E-05 44.8 3.6 44 82-128 52-95 (437)
203 1ls1_A Signal recognition part 86.9 3.1 0.00011 36.3 9.1 21 82-102 97-117 (295)
204 1c4o_A DNA nucleotide excision 86.7 10 0.00035 37.3 13.7 76 116-202 441-519 (664)
205 2qz4_A Paraplegin; AAA+, SPG7, 86.4 0.36 1.2E-05 41.3 2.8 52 46-100 3-56 (262)
206 2l8b_A Protein TRAI, DNA helic 86.2 0.2 6.8E-06 40.0 0.8 59 70-130 36-96 (189)
207 2db3_A ATP-dependent RNA helic 86.0 2.7 9.4E-05 39.0 8.8 70 116-196 302-374 (434)
208 2x8a_A Nuclear valosin-contain 85.8 0.17 5.9E-06 43.9 0.4 53 44-99 5-60 (274)
209 2qgz_A Helicase loader, putati 85.8 0.71 2.4E-05 40.8 4.3 19 83-101 152-170 (308)
210 3fht_A ATP-dependent RNA helic 85.4 2.8 9.6E-05 38.3 8.6 71 116-197 268-341 (412)
211 1kgd_A CASK, peripheral plasma 85.2 0.46 1.6E-05 38.1 2.7 19 82-100 4-22 (180)
212 2qmh_A HPR kinase/phosphorylas 85.2 0.45 1.5E-05 38.8 2.5 18 83-100 34-51 (205)
213 2j0s_A ATP-dependent RNA helic 85.1 2.9 0.0001 38.3 8.5 71 116-197 278-351 (410)
214 2z43_A DNA repair and recombin 84.9 1.3 4.5E-05 39.3 5.8 54 83-136 107-164 (324)
215 2eyu_A Twitching motility prot 84.8 0.43 1.5E-05 41.0 2.4 20 80-99 22-41 (261)
216 1xti_A Probable ATP-dependent 84.8 3 0.0001 37.8 8.4 73 116-199 252-327 (391)
217 2bjv_A PSP operon transcriptio 84.7 1.3 4.4E-05 38.0 5.5 19 82-100 28-46 (265)
218 2ffh_A Protein (FFH); SRP54, s 84.6 11 0.00038 34.7 11.9 21 83-103 98-118 (425)
219 3bh0_A DNAB-like replicative h 84.6 2.5 8.7E-05 37.3 7.5 54 80-137 65-118 (315)
220 2yjt_D ATP-dependent RNA helic 84.9 0.19 6.4E-06 40.1 0.0 71 116-197 32-105 (170)
221 1s2m_A Putative ATP-dependent 84.4 3.4 0.00011 37.7 8.5 71 116-197 260-333 (400)
222 2oxc_A Probable ATP-dependent 84.4 2 6.8E-05 35.8 6.4 71 287-362 91-172 (230)
223 2j37_W Signal recognition part 84.2 3.3 0.00011 39.2 8.4 18 85-102 103-120 (504)
224 2qor_A Guanylate kinase; phosp 84.2 0.39 1.3E-05 39.5 1.8 21 80-100 9-29 (204)
225 1ofh_A ATP-dependent HSL prote 84.2 1.4 4.7E-05 38.7 5.6 18 83-100 50-67 (310)
226 1vec_A ATP-dependent RNA helic 84.1 3.4 0.00011 33.6 7.6 71 288-362 71-152 (206)
227 1hv8_A Putative ATP-dependent 83.9 4.7 0.00016 36.0 9.2 72 116-198 240-314 (367)
228 1lv7_A FTSH; alpha/beta domain 83.9 1.2 4E-05 38.1 4.8 53 45-100 8-62 (257)
229 3nbx_X ATPase RAVA; AAA+ ATPas 83.8 0.52 1.8E-05 44.7 2.7 30 71-100 29-58 (500)
230 2yhs_A FTSY, cell division pro 83.8 4.1 0.00014 38.3 8.6 16 85-100 295-310 (503)
231 3iuy_A Probable ATP-dependent 83.7 2.9 9.9E-05 34.7 7.1 72 287-362 93-173 (228)
232 3bor_A Human initiation factor 83.6 1.9 6.6E-05 36.1 6.0 73 287-362 97-179 (237)
233 1jbk_A CLPB protein; beta barr 83.6 0.46 1.6E-05 38.2 2.0 18 83-100 43-60 (195)
234 3iij_A Coilin-interacting nucl 83.6 0.44 1.5E-05 38.1 1.9 21 81-101 9-29 (180)
235 3vaa_A Shikimate kinase, SK; s 83.5 0.61 2.1E-05 38.1 2.7 20 82-101 24-43 (199)
236 3trf_A Shikimate kinase, SK; a 83.3 0.49 1.7E-05 38.0 2.1 19 83-101 5-23 (185)
237 4ag6_A VIRB4 ATPase, type IV s 83.3 0.78 2.7E-05 42.1 3.6 43 81-126 33-75 (392)
238 3a8t_A Adenylate isopentenyltr 83.2 0.51 1.7E-05 42.0 2.2 19 84-102 41-59 (339)
239 1qhx_A CPT, protein (chloramph 83.2 0.5 1.7E-05 37.6 2.1 18 83-100 3-20 (178)
240 2zts_A Putative uncharacterize 83.1 0.38 1.3E-05 40.8 1.3 51 83-136 30-80 (251)
241 2gxq_A Heat resistant RNA depe 83.0 3.8 0.00013 33.3 7.5 72 287-362 71-150 (207)
242 1lvg_A Guanylate kinase, GMP k 82.9 0.47 1.6E-05 38.8 1.8 18 82-99 3-20 (198)
243 2xxa_A Signal recognition part 82.9 10 0.00035 35.1 11.0 21 85-105 102-122 (433)
244 1zp6_A Hypothetical protein AT 82.9 0.44 1.5E-05 38.5 1.6 19 81-99 7-25 (191)
245 2l82_A Designed protein OR32; 82.9 5.5 0.00019 28.0 6.8 50 291-340 5-54 (162)
246 3lw7_A Adenylate kinase relate 82.8 0.46 1.6E-05 37.6 1.6 17 85-101 3-19 (179)
247 3uk6_A RUVB-like 2; hexameric 82.7 1.2 4.1E-05 40.3 4.6 19 83-101 70-88 (368)
248 2zan_A Vacuolar protein sortin 82.6 0.76 2.6E-05 43.0 3.3 52 45-100 130-184 (444)
249 2oca_A DAR protein, ATP-depend 82.5 12 0.00041 35.4 11.8 91 116-218 349-442 (510)
250 3tau_A Guanylate kinase, GMP k 82.5 0.67 2.3E-05 38.2 2.6 19 82-100 7-25 (208)
251 2i1q_A DNA repair and recombin 82.3 1.7 5.8E-05 38.6 5.4 55 83-137 98-166 (322)
252 2j41_A Guanylate kinase; GMP, 82.0 0.6 2E-05 38.2 2.1 20 81-100 4-23 (207)
253 3exa_A TRNA delta(2)-isopenten 82.0 0.61 2.1E-05 41.0 2.2 17 85-101 5-21 (322)
254 3foz_A TRNA delta(2)-isopenten 81.6 0.65 2.2E-05 40.8 2.2 17 85-101 12-28 (316)
255 2r44_A Uncharacterized protein 81.6 0.48 1.6E-05 42.3 1.5 24 77-100 40-63 (331)
256 1w36_B RECB, exodeoxyribonucle 81.5 1.8 6.3E-05 46.0 6.0 55 84-138 17-80 (1180)
257 2ze6_A Isopentenyl transferase 81.4 0.66 2.3E-05 39.6 2.2 17 85-101 3-19 (253)
258 3u4q_B ATP-dependent helicase/ 81.3 0.62 2.1E-05 49.5 2.4 48 86-134 4-51 (1166)
259 1y63_A LMAJ004144AAA protein; 81.2 0.67 2.3E-05 37.3 2.1 20 82-101 9-28 (184)
260 2p65_A Hypothetical protein PF 81.2 0.55 1.9E-05 37.5 1.6 18 83-100 43-60 (187)
261 2ius_A DNA translocase FTSK; n 81.0 1.5 5E-05 41.6 4.6 41 83-123 167-208 (512)
262 1qde_A EIF4A, translation init 80.9 2 6.9E-05 35.5 5.1 71 287-362 81-161 (224)
263 3tif_A Uncharacterized ABC tra 80.9 1 3.6E-05 37.9 3.2 26 82-109 30-55 (235)
264 1kag_A SKI, shikimate kinase I 80.8 0.67 2.3E-05 36.7 1.9 18 83-100 4-21 (173)
265 1ixz_A ATP-dependent metallopr 80.8 1.1 3.7E-05 38.2 3.4 52 45-99 12-65 (254)
266 3tr0_A Guanylate kinase, GMP k 80.8 0.85 2.9E-05 37.2 2.6 19 82-100 6-24 (205)
267 3b9p_A CG5977-PA, isoform A; A 80.7 0.64 2.2E-05 40.7 2.0 53 45-100 17-71 (297)
268 2w0m_A SSO2452; RECA, SSPF, un 80.6 0.74 2.5E-05 38.4 2.3 22 80-101 20-41 (235)
269 4akg_A Glutathione S-transfera 80.5 1.7 5.9E-05 49.7 5.6 68 54-124 891-964 (2695)
270 3nwn_A Kinesin-like protein KI 80.4 0.93 3.2E-05 40.8 2.9 26 75-100 95-122 (359)
271 3kb2_A SPBC2 prophage-derived 80.3 0.63 2.2E-05 36.7 1.6 17 85-101 3-19 (173)
272 1n0w_A DNA repair protein RAD5 80.3 1.7 5.7E-05 36.5 4.4 24 82-105 23-46 (243)
273 2cvh_A DNA repair and recombin 80.1 0.99 3.4E-05 37.3 2.9 36 81-122 18-53 (220)
274 1ly1_A Polynucleotide kinase; 80.0 0.66 2.3E-05 36.9 1.7 16 85-100 4-19 (181)
275 1ojl_A Transcriptional regulat 80.0 0.97 3.3E-05 39.8 2.9 19 82-100 24-42 (304)
276 3gk5_A Uncharacterized rhodane 79.9 1.6 5.4E-05 31.5 3.5 37 287-323 54-90 (108)
277 3ney_A 55 kDa erythrocyte memb 79.8 1 3.4E-05 36.8 2.7 18 82-99 18-35 (197)
278 1kht_A Adenylate kinase; phosp 79.5 0.8 2.7E-05 36.9 2.0 19 83-101 3-21 (192)
279 3a00_A Guanylate kinase, GMP k 79.5 0.76 2.6E-05 37.0 1.9 16 84-99 2-17 (186)
280 3jvv_A Twitching mobility prot 79.5 0.87 3E-05 41.1 2.4 18 82-99 122-139 (356)
281 2c9o_A RUVB-like 1; hexameric 79.4 2.5 8.7E-05 39.6 5.7 19 83-101 63-81 (456)
282 3hws_A ATP-dependent CLP prote 79.4 0.74 2.5E-05 41.7 2.0 18 83-100 51-68 (363)
283 2ewv_A Twitching motility prot 79.3 0.82 2.8E-05 41.6 2.2 19 81-99 134-152 (372)
284 1ex7_A Guanylate kinase; subst 79.3 0.82 2.8E-05 36.9 2.0 16 84-99 2-17 (186)
285 3cm0_A Adenylate kinase; ATP-b 79.1 0.62 2.1E-05 37.4 1.2 19 83-101 4-22 (186)
286 3cf2_A TER ATPase, transitiona 79.1 1.4 4.8E-05 44.3 3.9 57 41-100 469-528 (806)
287 4gp7_A Metallophosphoesterase; 79.0 0.67 2.3E-05 36.8 1.4 19 82-100 8-26 (171)
288 1z6g_A Guanylate kinase; struc 79.0 0.85 2.9E-05 37.9 2.1 19 81-99 21-39 (218)
289 3iwh_A Rhodanese-like domain p 79.0 1.5 5.1E-05 31.4 3.1 36 287-322 55-90 (103)
290 1wrb_A DJVLGB; RNA helicase, D 78.9 5.8 0.0002 33.4 7.5 71 288-362 100-180 (253)
291 3ly5_A ATP-dependent RNA helic 78.9 7.2 0.00025 33.2 8.1 72 287-362 125-207 (262)
292 3crm_A TRNA delta(2)-isopenten 78.9 0.88 3E-05 40.3 2.2 17 85-101 7-23 (323)
293 1bg2_A Kinesin; motor protein, 78.8 1.1 3.7E-05 39.8 2.8 26 75-100 68-95 (325)
294 1cr0_A DNA primase/helicase; R 78.8 2.7 9.3E-05 36.6 5.4 23 80-102 32-54 (296)
295 2pl3_A Probable ATP-dependent 78.8 3.6 0.00012 34.4 6.0 71 287-362 96-177 (236)
296 1s96_A Guanylate kinase, GMP k 78.7 0.9 3.1E-05 37.8 2.1 20 80-99 13-32 (219)
297 3t15_A Ribulose bisphosphate c 78.4 0.86 3E-05 39.9 2.0 17 84-100 37-53 (293)
298 1v8k_A Kinesin-like protein KI 78.3 1.4 4.6E-05 40.4 3.3 25 76-100 146-172 (410)
299 2v6i_A RNA helicase; membrane, 78.3 2.8 9.7E-05 38.9 5.6 53 116-174 173-225 (431)
300 4g1u_C Hemin import ATP-bindin 78.2 1.8 6.2E-05 37.2 4.0 25 83-109 37-61 (266)
301 3foj_A Uncharacterized protein 78.2 1.7 5.9E-05 30.7 3.3 37 287-323 55-91 (100)
302 3t0q_A AGR253WP; kinesin, alph 78.1 1.4 4.8E-05 39.5 3.3 26 75-100 76-103 (349)
303 1knq_A Gluconate kinase; ALFA/ 78.1 0.84 2.9E-05 36.2 1.7 18 83-100 8-25 (175)
304 3d3q_A TRNA delta(2)-isopenten 78.0 0.98 3.4E-05 40.3 2.2 17 85-101 9-25 (340)
305 1nlf_A Regulatory protein REPA 78.0 3 0.0001 36.0 5.4 36 63-102 14-49 (279)
306 1znw_A Guanylate kinase, GMP k 78.0 0.99 3.4E-05 37.1 2.2 21 79-99 16-36 (207)
307 4eun_A Thermoresistant glucoki 78.0 0.95 3.2E-05 36.9 2.0 19 82-100 28-46 (200)
308 1x88_A Kinesin-like protein KI 77.8 1.3 4.4E-05 40.0 3.0 26 75-100 79-106 (359)
309 2ff7_A Alpha-hemolysin translo 77.8 1.4 4.9E-05 37.3 3.2 26 82-109 34-59 (247)
310 1t5c_A CENP-E protein, centrom 77.7 1.3 4.3E-05 39.8 2.9 26 75-100 68-95 (349)
311 1yks_A Genome polyprotein [con 77.7 2.2 7.4E-05 39.8 4.7 68 116-196 179-246 (440)
312 1f9v_A Kinesin-like protein KA 77.6 1.4 4.9E-05 39.4 3.2 26 75-100 75-102 (347)
313 3b6u_A Kinesin-like protein KI 77.6 1.3 4.4E-05 40.1 2.9 26 75-100 92-119 (372)
314 1v5w_A DMC1, meiotic recombina 77.6 3.1 0.00011 37.2 5.5 54 83-136 122-179 (343)
315 2pcj_A ABC transporter, lipopr 77.5 1.5 5.3E-05 36.5 3.2 26 82-109 29-54 (224)
316 3eme_A Rhodanese-like domain p 77.5 1.7 5.8E-05 30.9 3.1 37 287-323 55-91 (103)
317 1goj_A Kinesin, kinesin heavy 77.4 1.3 4.3E-05 39.9 2.8 25 76-100 72-98 (355)
318 1mv5_A LMRA, multidrug resista 77.3 1.5 5E-05 37.2 3.1 26 82-109 27-52 (243)
319 3bgw_A DNAB-like replicative h 77.3 2.3 8E-05 39.6 4.7 51 81-135 195-245 (444)
320 3gfo_A Cobalt import ATP-bindi 77.3 1.5 5.2E-05 37.9 3.2 25 83-109 34-58 (275)
321 3gbj_A KIF13B protein; kinesin 77.3 1.3 4.5E-05 39.8 2.9 26 75-100 83-110 (354)
322 2nr8_A Kinesin-like protein KI 77.2 1.3 4.5E-05 39.8 2.9 26 75-100 94-121 (358)
323 2zr9_A Protein RECA, recombina 77.2 1.4 4.8E-05 39.6 3.1 40 81-123 59-98 (349)
324 2vvg_A Kinesin-2; motor protei 77.1 1.3 4.4E-05 39.7 2.8 25 76-100 81-107 (350)
325 3dc4_A Kinesin-like protein NO 77.1 1.2 4.2E-05 39.8 2.6 25 76-100 86-112 (344)
326 2h58_A Kinesin-like protein KI 77.1 1.3 4.4E-05 39.4 2.7 26 75-100 71-98 (330)
327 3hr8_A Protein RECA; alpha and 77.0 1.3 4.6E-05 39.8 2.9 42 82-126 60-101 (356)
328 3lre_A Kinesin-like protein KI 76.9 1.3 4.5E-05 39.8 2.8 25 76-100 97-123 (355)
329 2v54_A DTMP kinase, thymidylat 76.8 1 3.5E-05 36.7 1.9 20 82-101 3-22 (204)
330 2bwj_A Adenylate kinase 5; pho 76.7 1.1 3.9E-05 36.2 2.2 19 82-100 11-29 (199)
331 1zuh_A Shikimate kinase; alpha 76.6 1 3.6E-05 35.4 1.9 18 84-101 8-25 (168)
332 2zfi_A Kinesin-like protein KI 76.6 1.4 4.6E-05 39.9 2.8 26 75-100 80-107 (366)
333 2c95_A Adenylate kinase 1; tra 76.6 1.2 4.2E-05 35.9 2.3 20 82-101 8-27 (196)
334 3t61_A Gluconokinase; PSI-biol 76.6 0.95 3.2E-05 37.0 1.7 18 84-101 19-36 (202)
335 3cob_A Kinesin heavy chain-lik 76.4 1.3 4.5E-05 40.0 2.6 25 76-100 71-97 (369)
336 2rhm_A Putative kinase; P-loop 76.4 1 3.5E-05 36.3 1.8 19 83-101 5-23 (193)
337 2y65_A Kinesin, kinesin heavy 76.4 1.5 5E-05 39.6 2.9 25 76-100 76-102 (365)
338 4f4c_A Multidrug resistance pr 76.4 5.4 0.00019 42.9 7.7 40 188-228 570-609 (1321)
339 1sgw_A Putative ABC transporte 76.3 1.7 5.7E-05 36.0 3.1 26 82-109 34-59 (214)
340 1gvn_B Zeta; postsegregational 76.2 1 3.5E-05 39.3 1.9 17 84-100 34-50 (287)
341 2pze_A Cystic fibrosis transme 76.2 1.7 5.8E-05 36.4 3.2 25 82-108 33-57 (229)
342 4etp_A Kinesin-like protein KA 75.9 1.6 5.4E-05 40.1 3.0 25 76-100 132-158 (403)
343 1u94_A RECA protein, recombina 75.9 1.6 5.3E-05 39.4 3.0 39 82-123 62-100 (356)
344 1tue_A Replication protein E1; 75.9 1.1 3.6E-05 36.8 1.7 44 55-100 28-75 (212)
345 2iut_A DNA translocase FTSK; n 75.8 2.5 8.7E-05 40.5 4.5 40 84-123 215-255 (574)
346 1wv9_A Rhodanese homolog TT165 75.8 2.4 8.1E-05 29.6 3.4 35 289-323 54-88 (94)
347 1rj9_A FTSY, signal recognitio 75.8 1.3 4.3E-05 39.0 2.3 18 83-100 102-119 (304)
348 4a14_A Kinesin, kinesin-like p 75.8 1.5 5.3E-05 39.2 2.9 25 76-100 75-101 (344)
349 2qt1_A Nicotinamide riboside k 75.7 1.1 3.6E-05 36.8 1.7 22 79-100 17-38 (207)
350 3eph_A TRNA isopentenyltransfe 75.7 1.2 4.2E-05 40.6 2.3 17 85-101 4-20 (409)
351 2ixe_A Antigen peptide transpo 75.7 1.8 6.2E-05 37.3 3.2 26 82-109 44-69 (271)
352 1u0j_A DNA replication protein 75.7 2.1 7.2E-05 36.6 3.6 44 55-101 73-122 (267)
353 3nh6_A ATP-binding cassette SU 75.6 1.2 4E-05 39.3 2.0 26 82-109 79-104 (306)
354 1g6h_A High-affinity branched- 75.5 1.8 6.2E-05 37.0 3.2 26 82-109 32-57 (257)
355 1iy2_A ATP-dependent metallopr 75.4 1.1 3.8E-05 38.8 1.8 53 44-99 35-89 (278)
356 3lnc_A Guanylate kinase, GMP k 75.3 1.2 4E-05 37.3 1.9 20 81-100 25-44 (231)
357 2bdt_A BH3686; alpha-beta prot 75.3 0.91 3.1E-05 36.6 1.2 16 85-100 4-19 (189)
358 1ji0_A ABC transporter; ATP bi 75.2 1.9 6.4E-05 36.4 3.2 26 82-109 31-56 (240)
359 2r2a_A Uncharacterized protein 75.2 1.4 4.8E-05 36.0 2.3 22 85-106 7-28 (199)
360 1b0u_A Histidine permease; ABC 75.2 1.9 6.5E-05 37.0 3.2 25 83-109 32-56 (262)
361 1vpl_A ABC transporter, ATP-bi 75.2 1.9 6.5E-05 36.8 3.2 26 82-109 40-65 (256)
362 2wbe_C Bipolar kinesin KRP-130 75.2 1.4 4.7E-05 39.9 2.5 26 75-100 91-118 (373)
363 1nij_A Hypothetical protein YJ 75.2 2.3 7.9E-05 37.6 3.9 14 86-99 7-20 (318)
364 4fcw_A Chaperone protein CLPB; 75.1 1.3 4.4E-05 39.0 2.2 18 84-101 48-65 (311)
365 1um8_A ATP-dependent CLP prote 75.1 1.2 4E-05 40.6 2.0 19 83-101 72-90 (376)
366 2heh_A KIF2C protein; kinesin, 75.0 1.7 5.8E-05 39.5 3.0 25 76-100 126-152 (387)
367 2olj_A Amino acid ABC transpor 75.0 1.9 6.6E-05 36.9 3.2 25 83-109 50-74 (263)
368 3bfn_A Kinesin-like protein KI 75.0 1.3 4.5E-05 40.2 2.2 23 78-100 92-116 (388)
369 3c8u_A Fructokinase; YP_612366 74.9 1.3 4.3E-05 36.5 2.0 17 83-99 22-38 (208)
370 1nks_A Adenylate kinase; therm 74.9 1.2 4E-05 35.9 1.7 17 85-101 3-19 (194)
371 1tev_A UMP-CMP kinase; ploop, 74.7 1.1 3.9E-05 36.0 1.7 18 84-101 4-21 (196)
372 3fb4_A Adenylate kinase; psych 74.6 1.1 3.9E-05 36.9 1.7 17 85-101 2-18 (216)
373 1m7g_A Adenylylsulfate kinase; 74.5 1.6 5.5E-05 35.9 2.5 30 70-100 13-42 (211)
374 1zd8_A GTP:AMP phosphotransfer 74.3 1.4 4.8E-05 36.7 2.2 18 83-100 7-24 (227)
375 3nwj_A ATSK2; P loop, shikimat 74.3 1.8 6.1E-05 36.8 2.8 20 82-101 47-66 (250)
376 1c9k_A COBU, adenosylcobinamid 74.3 2.2 7.6E-05 34.1 3.2 45 86-137 2-46 (180)
377 2cdn_A Adenylate kinase; phosp 74.3 1.3 4.3E-05 36.2 1.8 19 83-101 20-38 (201)
378 2yz2_A Putative ABC transporte 74.2 2.1 7.1E-05 36.8 3.2 26 82-109 32-57 (266)
379 2qp9_X Vacuolar protein sortin 74.2 1.5 5.2E-05 39.5 2.5 53 45-101 47-102 (355)
380 1wp9_A ATP-dependent RNA helic 74.2 5.2 0.00018 37.3 6.4 74 116-200 363-447 (494)
381 1via_A Shikimate kinase; struc 73.9 1.3 4.5E-05 35.1 1.8 17 85-101 6-22 (175)
382 2r62_A Cell division protease 73.9 0.72 2.5E-05 39.6 0.3 18 83-100 44-61 (268)
383 2ce7_A Cell division protein F 73.8 1.5 5E-05 41.3 2.3 53 45-100 12-66 (476)
384 3dl0_A Adenylate kinase; phosp 73.6 1.3 4.3E-05 36.6 1.7 17 85-101 2-18 (216)
385 1aky_A Adenylate kinase; ATP:A 73.6 1.4 4.9E-05 36.4 2.1 19 83-101 4-22 (220)
386 2owm_A Nckin3-434, related to 73.6 1.7 5.9E-05 40.3 2.7 25 76-100 128-154 (443)
387 2r8r_A Sensor protein; KDPD, P 73.5 2 6.8E-05 35.8 2.8 24 85-108 8-31 (228)
388 2ihy_A ABC transporter, ATP-bi 73.4 2.2 7.4E-05 37.0 3.2 25 83-109 47-71 (279)
389 1qf9_A UMP/CMP kinase, protein 73.3 1.3 4.6E-05 35.5 1.8 17 85-101 8-24 (194)
390 2rep_A Kinesin-like protein KI 73.3 1.7 5.9E-05 39.3 2.6 25 76-100 107-133 (376)
391 3u06_A Protein claret segregat 73.3 1.9 6.5E-05 39.6 2.9 26 75-100 129-156 (412)
392 3uie_A Adenylyl-sulfate kinase 73.2 1.6 5.6E-05 35.5 2.3 19 82-100 24-42 (200)
393 2ehv_A Hypothetical protein PH 73.2 1.6 5.6E-05 36.8 2.3 22 80-101 27-48 (251)
394 3d8b_A Fidgetin-like protein 1 73.2 1.7 5.9E-05 39.2 2.6 19 83-101 117-135 (357)
395 1xp8_A RECA protein, recombina 73.2 2.1 7.1E-05 38.8 3.1 40 82-124 73-112 (366)
396 3rc3_A ATP-dependent RNA helic 73.1 11 0.00037 37.3 8.3 73 118-202 324-401 (677)
397 2vli_A Antibiotic resistance p 73.1 1.5 5.1E-05 34.9 2.0 19 83-101 5-23 (183)
398 2iyv_A Shikimate kinase, SK; t 73.0 1.5 5.1E-05 35.1 1.9 17 85-101 4-20 (184)
399 1f2t_A RAD50 ABC-ATPase; DNA d 72.8 1.4 4.8E-05 34.0 1.7 15 85-99 25-39 (149)
400 1e6c_A Shikimate kinase; phosp 72.7 1.4 4.7E-05 34.8 1.6 17 85-101 4-20 (173)
401 3g5j_A Putative ATP/GTP bindin 72.7 6.7 0.00023 29.1 5.5 39 287-325 87-127 (134)
402 3asz_A Uridine kinase; cytidin 72.6 1.5 5.1E-05 36.0 1.9 17 83-99 6-22 (211)
403 2jtq_A Phage shock protein E; 72.6 5 0.00017 27.1 4.4 36 287-323 40-76 (85)
404 3vfd_A Spastin; ATPase, microt 72.5 1.5 5.1E-05 40.2 2.0 19 83-101 148-166 (389)
405 1gku_B Reverse gyrase, TOP-RG; 72.5 5.9 0.0002 41.5 6.7 74 287-362 98-181 (1054)
406 2ghi_A Transport protein; mult 72.4 2.8 9.7E-05 35.8 3.7 27 82-110 45-71 (260)
407 2pez_A Bifunctional 3'-phospho 72.4 1.5 5.1E-05 34.9 1.8 18 83-100 5-22 (179)
408 3umf_A Adenylate kinase; rossm 72.2 1.7 5.9E-05 36.0 2.1 20 83-102 29-48 (217)
409 1jjv_A Dephospho-COA kinase; P 72.1 1.4 4.9E-05 36.0 1.7 17 85-101 4-20 (206)
410 3sr0_A Adenylate kinase; phosp 72.0 1.8 6.2E-05 35.5 2.2 18 85-102 2-19 (206)
411 1zak_A Adenylate kinase; ATP:A 71.9 1.5 5.1E-05 36.4 1.8 18 84-101 6-23 (222)
412 1cke_A CK, MSSA, protein (cyti 71.8 1.5 5E-05 36.5 1.7 18 84-101 6-23 (227)
413 1vma_A Cell division protein F 71.7 2.1 7.2E-05 37.6 2.7 20 83-102 104-123 (306)
414 2wwf_A Thymidilate kinase, put 71.6 1.8 6E-05 35.5 2.1 20 82-101 9-28 (212)
415 1ukz_A Uridylate kinase; trans 71.5 1.5 5.2E-05 35.7 1.7 16 85-100 17-32 (203)
416 4a74_A DNA repair and recombin 71.4 1.7 5.9E-05 36.0 2.1 20 82-101 24-43 (231)
417 2if2_A Dephospho-COA kinase; a 71.3 1.6 5.4E-05 35.6 1.8 16 85-100 3-18 (204)
418 2jaq_A Deoxyguanosine kinase; 71.2 1.5 5.2E-05 35.6 1.6 16 85-100 2-17 (205)
419 3f9v_A Minichromosome maintena 71.1 2.1 7.2E-05 41.6 2.8 15 85-99 329-343 (595)
420 1g8p_A Magnesium-chelatase 38 71.0 1.3 4.4E-05 39.7 1.2 18 83-100 45-62 (350)
421 2plr_A DTMP kinase, probable t 70.9 1.6 5.4E-05 35.7 1.7 19 83-101 4-22 (213)
422 2xau_A PRE-mRNA-splicing facto 70.9 9.1 0.00031 38.5 7.5 75 116-196 305-393 (773)
423 2qi9_C Vitamin B12 import ATP- 70.9 2.6 9E-05 35.7 3.1 26 82-109 25-50 (249)
424 2pt5_A Shikimate kinase, SK; a 70.9 1.6 5.4E-05 34.2 1.6 17 85-101 2-18 (168)
425 3kta_A Chromosome segregation 70.7 1.7 5.8E-05 34.6 1.8 15 85-99 28-42 (182)
426 3hix_A ALR3790 protein; rhodan 70.6 3.4 0.00012 29.5 3.2 37 287-323 51-88 (106)
427 2yvu_A Probable adenylyl-sulfa 70.6 1.7 5.7E-05 34.9 1.7 19 83-101 13-31 (186)
428 1e4v_A Adenylate kinase; trans 70.5 1.7 5.8E-05 35.8 1.8 17 85-101 2-18 (214)
429 3fvq_A Fe(3+) IONS import ATP- 70.5 2.9 9.8E-05 37.7 3.3 25 83-109 30-54 (359)
430 2pbr_A DTMP kinase, thymidylat 70.4 1.6 5.6E-05 35.0 1.7 16 86-101 3-18 (195)
431 1ye8_A Protein THEP1, hypothet 70.3 2.3 7.9E-05 33.9 2.5 15 85-99 2-16 (178)
432 1nn5_A Similar to deoxythymidy 70.2 2 6.9E-05 35.2 2.2 20 82-101 8-27 (215)
433 3qf7_A RAD50; ABC-ATPase, ATPa 70.1 1.6 5.5E-05 39.5 1.7 16 85-100 25-40 (365)
434 2z0h_A DTMP kinase, thymidylat 69.9 1.7 5.9E-05 35.0 1.7 16 86-101 3-18 (197)
435 3be4_A Adenylate kinase; malar 69.9 2.1 7E-05 35.4 2.2 19 83-101 5-23 (217)
436 3tlx_A Adenylate kinase 2; str 69.8 2.1 7.2E-05 36.2 2.3 19 83-101 29-47 (243)
437 2onk_A Molybdate/tungstate ABC 69.8 2.8 9.7E-05 35.3 3.0 24 84-109 25-48 (240)
438 2v9p_A Replication protein E1; 69.7 2.4 8.1E-05 37.2 2.6 18 82-99 125-142 (305)
439 1in4_A RUVB, holliday junction 69.7 2.1 7.2E-05 38.2 2.3 17 84-100 52-68 (334)
440 2fsx_A RV0390, COG0607: rhodan 69.6 5.8 0.0002 30.3 4.6 37 287-323 79-116 (148)
441 2wv9_A Flavivirin protease NS2 69.6 5.4 0.00018 39.4 5.4 67 116-195 412-478 (673)
442 1tf5_A Preprotein translocase 69.5 15 0.00051 37.0 8.4 74 282-361 118-208 (844)
443 3p32_A Probable GTPase RV1496/ 69.4 40 0.0014 30.0 10.8 17 85-101 81-97 (355)
444 3eiq_A Eukaryotic initiation f 69.2 2.5 8.4E-05 38.8 2.8 71 116-197 282-355 (414)
445 3a4m_A L-seryl-tRNA(SEC) kinas 69.1 1.8 6.2E-05 37.0 1.7 18 84-101 5-22 (260)
446 3k1j_A LON protease, ATP-depen 69.0 5.2 0.00018 39.0 5.1 22 79-100 56-77 (604)
447 3pxg_A Negative regulator of g 68.9 2.9 9.7E-05 39.4 3.1 19 83-101 201-219 (468)
448 1sxj_A Activator 1 95 kDa subu 68.7 3.5 0.00012 39.3 3.8 43 189-233 147-190 (516)
449 3tqf_A HPR(Ser) kinase; transf 68.6 2.6 8.8E-05 33.4 2.3 20 82-101 15-34 (181)
450 3tqc_A Pantothenate kinase; bi 68.6 5.8 0.0002 35.0 4.9 15 86-100 95-109 (321)
451 1zu4_A FTSY; GTPase, signal re 68.4 2.7 9.2E-05 37.2 2.7 20 83-102 105-124 (320)
452 2xb4_A Adenylate kinase; ATP-b 68.4 1.9 6.5E-05 35.8 1.6 17 85-101 2-18 (223)
453 1xjc_A MOBB protein homolog; s 68.3 2.5 8.7E-05 33.4 2.3 15 85-99 6-20 (169)
454 1z47_A CYSA, putative ABC-tran 68.3 3.2 0.00011 37.3 3.2 26 82-109 40-65 (355)
455 2yyz_A Sugar ABC transporter, 68.2 3.3 0.00011 37.3 3.2 25 83-109 29-53 (359)
456 2grj_A Dephospho-COA kinase; T 68.2 2 6.9E-05 34.8 1.7 16 86-101 15-30 (192)
457 3auy_A DNA double-strand break 68.1 2 6.7E-05 39.1 1.8 15 85-99 27-41 (371)
458 2jlq_A Serine protease subunit 68.0 5.9 0.0002 37.0 5.1 67 116-195 190-256 (451)
459 2pjz_A Hypothetical protein ST 68.0 4.3 0.00015 34.7 3.8 25 83-109 30-54 (263)
460 3flh_A Uncharacterized protein 68.0 2.8 9.6E-05 31.0 2.3 37 287-323 70-108 (124)
461 3rlf_A Maltose/maltodextrin im 68.0 3.3 0.00011 37.6 3.2 24 83-108 29-52 (381)
462 4a2q_A RIG-I, retinoic acid in 67.9 10 0.00035 38.3 7.2 71 288-362 296-377 (797)
463 4f4c_A Multidrug resistance pr 67.9 3.9 0.00013 44.0 4.2 27 82-110 1104-1130(1321)
464 1q57_A DNA primase/helicase; d 67.9 2.8 9.6E-05 39.8 2.9 53 80-135 239-291 (503)
465 1ak2_A Adenylate kinase isoenz 67.8 2.8 9.7E-05 35.0 2.6 19 83-101 16-34 (233)
466 2k0z_A Uncharacterized protein 67.8 6.1 0.00021 28.4 4.1 37 287-323 55-91 (110)
467 2fsf_A Preprotein translocase 67.7 14 0.0005 37.0 7.9 57 284-346 111-171 (853)
468 1np6_A Molybdopterin-guanine d 67.6 3.4 0.00012 32.8 2.9 15 85-99 8-22 (174)
469 4a2p_A RIG-I, retinoic acid in 67.5 8.3 0.00028 36.8 6.2 71 288-362 55-136 (556)
470 2bbw_A Adenylate kinase 4, AK4 67.5 2.3 8E-05 35.9 2.1 18 83-100 27-44 (246)
471 1g41_A Heat shock protein HSLU 67.4 8.7 0.0003 35.6 6.0 18 83-100 50-67 (444)
472 2cbz_A Multidrug resistance-as 67.3 2.2 7.7E-05 35.9 1.9 25 82-108 30-54 (237)
473 2i3b_A HCR-ntpase, human cance 67.2 2.9 9.9E-05 33.7 2.5 43 188-233 103-146 (189)
474 1qxn_A SUD, sulfide dehydrogen 67.2 4.4 0.00015 30.6 3.4 37 287-323 81-118 (137)
475 2it1_A 362AA long hypothetical 67.2 3.5 0.00012 37.1 3.2 24 83-108 29-52 (362)
476 3tbk_A RIG-I helicase domain; 67.2 6.5 0.00022 37.5 5.4 71 288-362 52-133 (555)
477 2p5t_B PEZT; postsegregational 66.6 1.7 5.7E-05 37.1 0.9 18 83-100 32-49 (253)
478 1uf9_A TT1252 protein; P-loop, 66.5 2.8 9.6E-05 33.9 2.3 17 85-101 10-26 (203)
479 1v43_A Sugar-binding transport 66.5 3.7 0.00013 37.2 3.2 25 83-109 37-61 (372)
480 1pzn_A RAD51, DNA repair and r 66.4 3.9 0.00013 36.7 3.3 19 84-102 132-150 (349)
481 1q0u_A Bstdead; DEAD protein, 66.3 3.7 0.00013 33.8 3.0 71 288-362 72-156 (219)
482 3tui_C Methionine import ATP-b 66.2 3.8 0.00013 36.9 3.2 27 82-110 53-79 (366)
483 3b9q_A Chloroplast SRP recepto 66.1 3.2 0.00011 36.4 2.7 18 83-100 100-117 (302)
484 3fmo_B ATP-dependent RNA helic 65.9 3.8 0.00013 35.8 3.2 67 289-362 163-241 (300)
485 1gmx_A GLPE protein; transfera 65.9 4.1 0.00014 29.1 2.9 38 287-324 57-95 (108)
486 1nkt_A Preprotein translocase 65.7 20 0.0007 36.2 8.5 76 280-361 144-236 (922)
487 1vht_A Dephospho-COA kinase; s 65.7 2.3 7.9E-05 35.1 1.6 17 85-101 6-22 (218)
488 1tq1_A AT5G66040, senescence-a 65.5 4.5 0.00015 30.1 3.1 38 287-324 81-119 (129)
489 1rz3_A Hypothetical protein rb 65.5 2.5 8.5E-05 34.4 1.8 18 83-100 22-39 (201)
490 3nhv_A BH2092 protein; alpha-b 65.3 4.3 0.00015 31.0 3.0 36 288-323 72-109 (144)
491 3ice_A Transcription terminati 65.2 5.4 0.00018 36.3 3.9 32 69-100 157-191 (422)
492 1g29_1 MALK, maltose transport 65.2 4 0.00014 37.0 3.2 26 82-109 28-53 (372)
493 1htw_A HI0065; nucleotide-bind 65.0 2.5 8.6E-05 33.0 1.6 18 82-99 32-49 (158)
494 2nq2_C Hypothetical ABC transp 65.0 3.4 0.00011 35.2 2.5 26 82-109 30-55 (253)
495 4e22_A Cytidylate kinase; P-lo 64.9 3.4 0.00012 35.1 2.6 18 83-100 27-44 (252)
496 3b5x_A Lipid A export ATP-bind 64.9 4.9 0.00017 39.0 4.0 26 82-109 368-393 (582)
497 1fuu_A Yeast initiation factor 64.7 14 0.00049 33.2 7.0 71 287-362 88-168 (394)
498 3dkp_A Probable ATP-dependent 64.6 4.4 0.00015 34.0 3.2 72 288-362 98-181 (245)
499 1ypw_A Transitional endoplasmi 64.5 2 7E-05 43.5 1.3 56 42-100 470-528 (806)
500 1ry6_A Internal kinesin; kines 64.4 3.8 0.00013 36.8 2.9 19 82-100 82-102 (360)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-64 Score=480.66 Aligned_cols=375 Identities=29% Similarity=0.511 Sum_probs=337.9
Q ss_pred cccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-----CCCeE
Q 014314 42 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVT 116 (427)
Q Consensus 42 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~ 116 (427)
+.+..+|+++++++.++++|.++||..|+|+|+++++.++.|+++++++|||||||++|++|++..+... ...++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 3345679999999999999999999999999999999999999999999999999999999999876432 23468
Q ss_pred EEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEE
Q 014314 117 ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196 (427)
Q Consensus 117 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVv 196 (427)
+||++||++|+.|++++++++.... ++++..++|+.....+...+..+ ++|+|+||++|.+++.+....+.+++++|+
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 9999999999999999999998764 78899999999888777777666 699999999999999988888999999999
Q ss_pred cCCcccccCCCcHHHHHHHHHhC--CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhh
Q 014314 197 DECDKMLESLDMRRDVQEIFKMT--PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE 274 (427)
Q Consensus 197 DEah~~~~~~~~~~~~~~~~~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (427)
||||++++ .+|...+..++... +...|++++|||+|..+..++..++.++..+....... ....+.+.+.......
T Consensus 210 DEah~~~~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~ 287 (434)
T 2db3_A 210 DEADRMLD-MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG-ACSDVKQTIYEVNKYA 287 (434)
T ss_dssp ETHHHHTS-TTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC-CCTTEEEEEEECCGGG
T ss_pred ccHhhhhc-cCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc-cccccceEEEEeCcHH
Confidence 99999998 68999999998874 56789999999999999999999999888877765443 3355667777788888
Q ss_pred HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCC
Q 014314 275 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (427)
Q Consensus 275 ~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~ 354 (427)
+...+..++..... ++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 288 k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi 366 (434)
T 2db3_A 288 KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 366 (434)
T ss_dssp HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc
Confidence 88888888887764 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCC
Q 014314 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
|++++||+|++|.+..+|+||+||+||.|+.|.+++|+++..+..+.+.+.+.+....+++|+++.+
T Consensus 367 ~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 367 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999998888889999999999999999998764
No 2
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-63 Score=470.86 Aligned_cols=383 Identities=76% Similarity=1.212 Sum_probs=352.8
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
.+.+|+++++++.+.++|.++||..|+|+|.++++.++.++++++.+|||+|||++|+++++..+.......++||++|+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 35679999999999999999999999999999999999999999999999999999999999988766656689999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++++....+++++..++|+.........+.++.++|+|+||+++..++......+.++++||+||||.+.
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 99999999999999887778999999999988877777777667999999999999988888888999999999999998
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 283 (427)
++.++...+..++...+...|++++|||++......+..++..+..+................+.......+...+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 245 (391)
T 1xti_A 166 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245 (391)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH
T ss_pred hccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHH
Confidence 75678888888998888899999999999999999999999999888777666556666777788888888999999999
Q ss_pred HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEc
Q 014314 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~ 363 (427)
.....+++||||++++.++.+++.|...|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCCCCCCC
Q 014314 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 426 (427)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 426 (427)
++|+|...|+||+||+||.|++|.+++++.+.++..+++.+++.++.+++++|..++...|++
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 388 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCCGGGTSC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccccHHHHhh
Confidence 999999999999999999999999999999888889999999999999999999999988875
No 3
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.5e-60 Score=450.08 Aligned_cols=376 Identities=40% Similarity=0.657 Sum_probs=334.7
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
....|+++++++.+.++|.++||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 34579999999999999999999999999999999999999999999999999999999999988765555689999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++.+.... ++++..++|+.....+....... ++|+|+||+++...+......+.++++||+||||.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNET-VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 176 (400)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSC-CSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCC-CCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhh
Confidence 999999999999988765 78899999988776665555444 6999999999999888877788999999999999987
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 283 (427)
+ ..+...+..+...+++..|++++|||++......+...+..+..+..... .........+.......+...+..++
T Consensus 177 ~-~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 177 S-RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp S-HHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred h-hchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHH
Confidence 7 57788888888888888999999999999988888888888766544322 33445566666677778888899999
Q ss_pred HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEc
Q 014314 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~ 363 (427)
.....+++||||++++.++.+++.|+..|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINF 333 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEES
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCCCCCC
Q 014314 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 425 (427)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 425 (427)
++|+|...|+||+||+||.|+.|.|++|++. .+...++.+++.++.+++++|..+.++-|.
T Consensus 334 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 394 (400)
T 1s2m_A 334 DFPKTAETYLHRIGRSGRFGHLGLAINLINW-NDRFNLYKIEQELGTEIAAIPATIDKSLYV 394 (400)
T ss_dssp SCCSSHHHHHHHHCBSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTCCCEECCSSCCGGGTC
T ss_pred CCCCCHHHHHHhcchhcCCCCCceEEEEecc-chHHHHHHHHHHhCCCccccccccccccee
Confidence 9999999999999999999999999999975 577789999999999999999988876664
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.8e-60 Score=452.52 Aligned_cols=371 Identities=36% Similarity=0.646 Sum_probs=331.8
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
..+|+++++++.+.++|.+.||..|+++|+++++.++.++++++++|||+|||++|++|+++.+.......++||++|++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 34699999999999999999999999999999999999999999999999999999999999886555556999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
+|+.|+.+.++.+.... ++.+..+.|+.....+...+..+ ++|+|+||+++...+......+..+++||+||||.+.+
T Consensus 116 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp HHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 99999999999987765 78899999998887777776665 59999999999999988888889999999999999987
Q ss_pred CCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh-hHHHHHHHHH
Q 014314 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283 (427)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l 283 (427)
.++...+..++..+++..|++++|||++.....+...++.++..+...... .......+.+...... .+...+..++
T Consensus 194 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~ 271 (410)
T 2j0s_A 194 -KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLY 271 (410)
T ss_dssp -TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHHHHHHHHH
Confidence 688899999999998999999999999998888888888888766544332 2334455555555443 4788888888
Q ss_pred HhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEc
Q 014314 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (427)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~ 363 (427)
.....+++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 272 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp HHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
++|++...|+||+||+||.|+.|.+++|+. ..+...++.+++.++.++.++|....
T Consensus 352 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 352 DLPNNRELYIHRIGRSGRYGRKGVAINFVK-NDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEEEE-GGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEec-HHHHHHHHHHHHHhCCCceecccchh
Confidence 999999999999999999999999999997 57788999999999999999987653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-60 Score=451.92 Aligned_cols=374 Identities=39% Similarity=0.651 Sum_probs=318.7
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
....|+++++++.+.+.|.+.|+..|+++|+++++.++.++++++.+|||+|||++|++++++.+.......++||++|+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 34579999999999999999999999999999999999999999999999999999999999988766555689999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++.+.... +..+....|+.........+..+.++|+|+||+++...+......+..+++||+||||.+.
T Consensus 118 ~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~ 196 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 196 (414)
T ss_dssp HHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhh
Confidence 999999999999998775 7888888998888877777776668999999999999998888888899999999999988
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhhHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDL 282 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 282 (427)
+ .++...+..++..+++..|++++|||++.........++.++..+....... ......+.+.... ...+...+..+
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 197 S-RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL-TLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp H-TTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC-CTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred c-cCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc-CCCCceEEEEEeChHHhHHHHHHHH
Confidence 7 6888999999999999999999999999999999898888887766544433 3344455555544 34488889999
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
+.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 275 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 275 YETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 354 (414)
T ss_dssp HHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE
T ss_pred HHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccCC
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (427)
+++|.|...|+||+||+||.|++|.+++++. ..+...++.+++.++.++.++|..+.+
T Consensus 355 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 355 YDLPTNRENYIHRIGRGGRFGRKGVAINMVT-EEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp SSCCSSTHHHHHHSCCC-------CEEEEEC-STHHHHHHHHHHHTTCCCEECCC----
T ss_pred eCCCCCHHHhhhhcCcccCCCCCceEEEEEc-HHHHHHHHHHHHHHcCCccccChhhhh
Confidence 9999999999999999999999999999997 567888999999999999999887653
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.5e-60 Score=450.28 Aligned_cols=374 Identities=31% Similarity=0.500 Sum_probs=324.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC----------
Q 014314 42 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---------- 111 (427)
Q Consensus 42 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---------- 111 (427)
+....+|+++++++.+.++|...||..|+|+|.++++.++.++++++++|||+|||++|++|++..+...
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 3445679999999999999999999999999999999999999999999999999999999998765321
Q ss_pred --------CCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc
Q 014314 112 --------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD 183 (427)
Q Consensus 112 --------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~ 183 (427)
...+++||++|+++|+.|+.+.++++.... ++++..++|+.....+...+..+ ++|+|+||++|...+..
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMER 168 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTC-CSEEEECHHHHHHHHHT
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCC-CCEEEEChHHHHHHHHc
Confidence 122579999999999999999999987664 78999999998887777777665 69999999999999988
Q ss_pred CCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHh--CCC--CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcccc
Q 014314 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM--TPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT 259 (427)
Q Consensus 184 ~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~--~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (427)
....+..+++||+||||.+.+ .++...+..+... .+. ..|++++|||++..+..+...++..+..+....... .
T Consensus 169 ~~~~~~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 246 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLD-MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS-T 246 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHH-TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----C
T ss_pred CCcChhhCcEEEEEChhHhhc-cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCC-C
Confidence 888889999999999999988 5788888888774 322 578999999999998888888888887766554332 3
Q ss_pred ccceEEEEEEechhhHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC
Q 014314 260 LHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~ 338 (427)
...+.+.+.......+...+..+++.. .++++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+
T Consensus 247 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 247 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp CSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred ccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 345566677777788888888988876 5678999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 339 ~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++|+. ..+...++.+.+.+....+++|.+
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 405 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN-ERNINITKDLLDLLVEAKQEVPSW 405 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC-GGGGGGHHHHHHHHHHTTCCCCHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc-cccHHHHHHHHHHHHHhcCcCCHH
Confidence 9999999999999999999999999999999999999999999999999999997 567777888888888888888876
Q ss_pred cC
Q 014314 419 ID 420 (427)
Q Consensus 419 ~~ 420 (427)
+.
T Consensus 406 l~ 407 (417)
T 2i4i_A 406 LE 407 (417)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.1e-59 Score=442.46 Aligned_cols=370 Identities=34% Similarity=0.569 Sum_probs=324.2
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
...|+++++++.++++|.+.||..|+++|.++++.++.+ +++++++|||+|||++|++|++..+......+++||++|
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 103 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 103 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECC
Confidence 457999999999999999999999999999999999997 899999999999999999999998877666678999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCcc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 201 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah~ 201 (427)
+++|+.|+.+.++++....+++.+....++....... ...++|+|+||+++...+.. ....+.++++||+||||.
T Consensus 104 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 104 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 9999999999999998877788888888876543221 23369999999999998865 456678999999999999
Q ss_pred cccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhhHHHHHH
Q 014314 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLN 280 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 280 (427)
+.+..++...+..+...++...|++++|||++.....+...++.++..+....... ......+.+.... ...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 258 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALC 258 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCChHHHHHHHH
Confidence 98756888888899999999999999999999999999999988887766554433 3344445554443 456778888
Q ss_pred HHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEE
Q 014314 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (427)
Q Consensus 281 ~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~v 360 (427)
.++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 259 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 338 (412)
T 3fht_A 259 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 338 (412)
T ss_dssp HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEE
T ss_pred HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEE
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------CchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCccc
Q 014314 361 INYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 361 i~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
|++++|+ +..+|+||+||+||.|+.|.++++++..++..+++.+++.++.++++++.+.
T Consensus 339 i~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 339 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp EESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred EEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 9999994 6689999999999999999999999988889999999999999999887643
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.8e-58 Score=435.54 Aligned_cols=366 Identities=31% Similarity=0.558 Sum_probs=321.7
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
..+|+++++++.++++|.+.|+..|+|+|.++++.++.+ +++++++|||+|||++++++++..+.......++||++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 467999999999999999999999999999999999998 899999999999999999999998876656668999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~ 202 (427)
+++|+.|+.+.++++.... ++.+....++...... ...++|+|+||+++...+......+.++++||+||||.+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 157 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhh
Confidence 9999999999999987664 6777777766432221 123699999999999999888888999999999999999
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEe-chhhHHHHHHH
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLND 281 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 281 (427)
.+..++...+..+....+...|++++|||+++....+...++..+..+....... ........+... ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 158 LDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV-NVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC-SCTTEEEEEEECSSHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc-ccccccEEEEEcCchHHHHHHHHH
Confidence 8767888889999999999999999999999998899888888777665443322 334444555444 44567778888
Q ss_pred HHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE
Q 014314 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (427)
Q Consensus 282 ~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi 361 (427)
++.....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 237 LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp HHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC------CchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhc-cccccCCc
Q 014314 362 NYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFE-VDIKELPE 417 (427)
Q Consensus 362 ~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 417 (427)
++++|+ |...|+||+||+||.|+.|.+++++...++..+++.+++.++ .++..++.
T Consensus 317 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 317 NYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp ESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred EcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 999999 999999999999999999999999998888999999999998 88877764
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.3e-57 Score=421.54 Aligned_cols=361 Identities=36% Similarity=0.596 Sum_probs=319.6
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC-CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
+..+|+++++++.+.+.|.+.|+..|+|+|.++++.++.+ +++++.+|||+|||++++++++..+.... +.+++|++|
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-~~~~lil~P 82 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-GIEAIILTP 82 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-SCCEEEECS
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC-CCcEEEEcC
Confidence 3457999999999999999999999999999999999998 69999999999999999999998876543 348999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~ 202 (427)
+++|+.|+.+.++.+.... ++.+..++|+.........+.+ ++|+|+||+++...+......+.++++||+||||.+
T Consensus 83 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 83 TRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKN--ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM 159 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHT--CSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCC--CCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh
Confidence 9999999999999988764 7788899998887766665553 599999999999998888888899999999999999
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHH
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (427)
.+ .++...+..++...++..+++++|||++.........++.++..+..... ......+.......+...+..+
T Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LN-MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HT-TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHH
T ss_pred hh-hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHH
Confidence 87 67888899999998889999999999999888888888776655433222 2445666677777888888887
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
+. ..+.++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 234 l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 312 (367)
T 1hv8_A 234 LK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN 312 (367)
T ss_dssp HC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE
T ss_pred Hh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE
Confidence 76 35678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCC
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 416 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (427)
+++|+|..+|+||+||+||.|++|.++++++ ..+...++.+++.++.++++++
T Consensus 313 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 313 YHLPQNPESYMHRIGRTGRAGKKGKAISIIN-RREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC-TTSHHHHHHHHHHHTCCCCCBC
T ss_pred ecCCCCHHHhhhcccccccCCCccEEEEEEc-HHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999997 4678889999999999998764
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-59 Score=453.95 Aligned_cols=369 Identities=34% Similarity=0.574 Sum_probs=180.2
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
...|.++++++.+.++|.++||..|+++|.++++.++.+ +++++++|||||||++|++|++..+......+++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 357999999999999999999999999999999999987 899999999999999999999999887776778999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCcc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 201 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah~ 201 (427)
+++|+.|+++.++.+....+++.+....++....... ...++|+|+||+++..++.+ ....+.++++||+||+|.
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 9999999999999998877788888888776543221 22358999999999998865 456678999999999999
Q ss_pred cccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec-hhhHHHHHH
Q 014314 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLN 280 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 280 (427)
+.+..++...+..+...++..+|++++|||++.....++..++.++..+....... ......+.+..+. ...+...+.
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHHHH
Confidence 98756888888899999999999999999999999999999998887776655433 2233333333333 345666777
Q ss_pred HHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEE
Q 014314 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (427)
Q Consensus 281 ~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~v 360 (427)
.++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 326 ~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~V 405 (479)
T 3fmp_B 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 405 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEE
Confidence 77777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------CchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 361 INYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 361 i~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
|++++|. +...|+||+||+||.|+.|.+++|+++.++..+++.+++.++.++..++..
T Consensus 406 I~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 406 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred EEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 9999994 668999999999999999999999998888999999999999999887653
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.1e-59 Score=440.38 Aligned_cols=371 Identities=38% Similarity=0.646 Sum_probs=184.7
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
....|+++++++.+.+.+.+.|+..|+++|+++++.++.++++++.+|||+|||++|++|++..+.......++||++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 34569999999999999999999999999999999999999999999999999999999999988766666699999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.+.++.... ++++..++|+.........+.. ++|+|+||+++...+......+.++++||+||||.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp HHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 999999999999987665 7889999999887666555543 5899999999999888877788899999999999988
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechh-hHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDL 282 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 282 (427)
+ .++...+..+...+++..|++++|||+++........++..+..+....... ........+...... .+...+..+
T Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 176 S-SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL-TLEGIKQFYVNVEEEEYKYECLTDL 253 (394)
T ss_dssp H-TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred C-CCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc-cCCCceEEEEEcCchhhHHHHHHHH
Confidence 7 5788999999999999999999999999998888888888888776654332 222233333333322 356667777
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
++....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 254 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~ 333 (394)
T 1fuu_A 254 YDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 333 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
+++|.+...|+||+||+||.|++|.+++++.+ ++...++.+++.++.+++++|.++.
T Consensus 334 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 334 YDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ----------------------------------------------------------
T ss_pred eCCCCCHHHHHHHcCcccCCCCCceEEEEEch-hHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999999974 5777899999999999999887654
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.5e-56 Score=436.65 Aligned_cols=361 Identities=25% Similarity=0.417 Sum_probs=299.5
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhh--cCCeEEEEecCCCCcchHHHHHhhhccCCC----CCCeEEEEEeCchHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTREL 126 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~P~~~L 126 (427)
+++.++++|..+||..|+|+|.++++.++ .++++++++|||+|||++|++|+++.+... ...+++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 688999999999999999999999875432 234589999999999
Q ss_pred HHHHHHHHHHHhcc---CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCCccc
Q 014314 127 AYQICHEFERFSTY---LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKM 202 (427)
Q Consensus 127 ~~q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvDEah~~ 202 (427)
+.|+.+.++++... .+...+..+.|+.........+....++|+|+||++|..++.+. ...+..+++||+||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999999988642 23567888899988887777776655799999999999877654 345788999999999999
Q ss_pred ccCCCcHHHHHHHHHhCC-------CCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCc---cccccceEEEEEEech
Q 014314 203 LESLDMRRDVQEIFKMTP-------HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA---KLTLHGLVQHYIKLSE 272 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 272 (427)
++ .+|...+..+...++ ...|++++|||+++.+..++..++..+..+...... ......+.+.+.....
T Consensus 188 ~~-~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 188 LE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp TS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hc-CCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 98 578888877765542 367999999999999999988888887776654322 1222334444444332
Q ss_pred h--hHHHH---HHHHHHh-cCCCeEEEEECCchhHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEE
Q 014314 273 L--EKNRK---LNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343 (427)
Q Consensus 273 ~--~~~~~---l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv 343 (427)
. ..... +...+.. ..+.++||||++++.++.+++.|+.. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 1 12222 2333332 45689999999999999999999887 89999999999999999999999999999999
Q ss_pred EeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccC
Q 014314 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (427)
||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++|+.+ .+..+++.+++.....+...
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCCEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999999984 67888999998877766543
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-55 Score=434.84 Aligned_cols=361 Identities=25% Similarity=0.426 Sum_probs=298.0
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhh--cCCeEEEEecCCCCcchHHHHHhhhccCCCC----CCeEEEEEeCchHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTREL 126 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L 126 (427)
+++.+++++.+.||..|+|+|.++++.++ .++++++++|||||||++|++|++..+.... ..+++|||+|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999998764332 23589999999999
Q ss_pred HHHHHHHHHHHhcc---CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCCccc
Q 014314 127 AYQICHEFERFSTY---LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKM 202 (427)
Q Consensus 127 ~~q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvDEah~~ 202 (427)
+.|++++++++... .+...+..+.|+.........+....++|+|+||++|+.++.+. ...+..+++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 23567888899988777777765555799999999999877654 335788999999999999
Q ss_pred ccCCCcHHHHHHHHHhC-------CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCcc---ccccceEEEEEEech
Q 014314 203 LESLDMRRDVQEIFKMT-------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK---LTLHGLVQHYIKLSE 272 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 272 (427)
++ .+|...+..+...+ ....|++++|||+++.+..++..++..+..+....... .....+.+.+.....
T Consensus 239 ~~-~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 239 LE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp TS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hc-cchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 88 57888877776543 23679999999999999889888888877666543221 222334444444332
Q ss_pred h-hH-H---HHHHHHHHh-cCCCeEEEEECCchhHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEE
Q 014314 273 L-EK-N---RKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343 (427)
Q Consensus 273 ~-~~-~---~~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv 343 (427)
. .+ . ..+...+.. ..+.++||||++++.++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 1 222222322 45689999999999999999999886 89999999999999999999999999999999
Q ss_pred EeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccC
Q 014314 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 415 (427)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (427)
||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++|+.+ .+..+++.+++.....+...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCCEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999999984 67888999998877766543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-54 Score=398.00 Aligned_cols=336 Identities=33% Similarity=0.542 Sum_probs=287.0
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (427)
+++.+.++|.++|+..|+|+|+++++.++.++++++.+|||+|||++|+++++.. ..+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999998875 2289999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHH
Q 014314 133 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV 212 (427)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~ 212 (427)
.++++.... +.++..++|+.........+.+ ++|+|+||+++.+.+......+.++++||+||||.+.+ .++...+
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~~~~ 150 (337)
T 2z0m_A 75 HIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE-MGFIDDI 150 (337)
T ss_dssp HHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH-TTCHHHH
T ss_pred HHHHHhhhc-CCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc-cccHHHH
Confidence 999987665 7889999998887766665554 59999999999998888777788999999999999987 5888889
Q ss_pred HHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEE
Q 014314 213 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVV 292 (427)
Q Consensus 213 ~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 292 (427)
..++...+...+++++|||++......+..++..+..+... .........+.......+ .....+....++++|
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 224 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVI 224 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEE
Confidence 99999999899999999999999888888888877655322 223334444554444332 223555666778999
Q ss_pred EEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhh
Q 014314 293 IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTY 372 (427)
Q Consensus 293 vf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~ 372 (427)
|||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|...|
T Consensus 225 vf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 300 (337)
T 2z0m_A 225 VFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTY 300 (337)
T ss_dssp EECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHH
T ss_pred EEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHh
Confidence 99999999999988876 57889999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhcc
Q 014314 373 LHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 410 (427)
Q Consensus 373 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 410 (427)
+||+||+||.|++|.+++|+. .+..+++.+++.++.
T Consensus 301 ~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 301 IHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC-----
T ss_pred hHhcCccccCCCCceEEEEEe--CcHHHHHHHHHHhcc
Confidence 999999999999999999998 677778888776653
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-55 Score=427.99 Aligned_cols=364 Identities=29% Similarity=0.523 Sum_probs=267.4
Q ss_pred CCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
|...++++.+.+.+.+.|+..|+++|.++++.++.+ +++++.+|||||||++|+++++..+.....+.++||++|+++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHH
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHH
Confidence 455678888999999999999999999999999998 899999999999999999999998877766668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+.+.++++.... ++.+....++..... ....++|+|+||+++...+......+.++++||+||+|.+.+.
T Consensus 201 L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 201 LARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp HHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC
T ss_pred HHHHHHHHHHHhCCcc-CeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc
Confidence 9999999999987654 455544444332211 1223699999999999988888888899999999999999876
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEe-chhhHHHHHHHHHH
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLD 284 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~ 284 (427)
.++...+..+...++...|++++|||+++....+...+...+..+....... ........+... ....+...+..++.
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL-SVEGIKQLYMDCQSEEHKYNVLVELYG 353 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC-CcccceEEEEECCchHHHHHHHHHHHH
Confidence 6888999999999999999999999999988999888888887665443332 222233333333 44556777888888
Q ss_pred hcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcC
Q 014314 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 364 (427)
Q Consensus 285 ~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~ 364 (427)
....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 354 ~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 365 MP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 365 ~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
.| .|...|+||+||+||.|+.|.+++|+.+.++...++.+++.++.++++++..
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99 7899999999999999999999999998888899999999999999988864
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.2e-53 Score=412.39 Aligned_cols=335 Identities=19% Similarity=0.214 Sum_probs=268.4
Q ss_pred CCCCCCCCHHHHHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 47 GFRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+.++++++.+.+.|++ .||..|+|+|.++++.++.|+++++.+|||+|||++|++|++... .++|||+|+++
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~------g~~lVisP~~~ 95 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD------GFTLVICPLIS 95 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS------SEEEEECSCHH
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC------CcEEEEeCHHH
Confidence 35578899999999998 599999999999999999999999999999999999999998742 28999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH-----hcCCCcEEEechHHHHH------HHhcCCCCCCCccEE
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL-----KNECPQIVVGTPGRILA------LARDKDLSLKNVRHF 194 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~------~~~~~~~~~~~~~~i 194 (427)
|+.|+.+.++.+ ++++..++|+.........+ ..+.++|+|+||++|.. .+.. ...+.++++|
T Consensus 96 L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~i 169 (591)
T 2v1x_A 96 LMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEE
Confidence 999999999887 67888888887765443332 24557999999998742 2222 3346788999
Q ss_pred EEcCCcccccC-CCcHHHHHH--HHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEec
Q 014314 195 ILDECDKMLES-LDMRRDVQE--IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271 (427)
Q Consensus 195 VvDEah~~~~~-~~~~~~~~~--~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (427)
||||||+++.+ .+|++.+.. .+....+..+++++|||+++.+...+..++..+......... ...++........
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~~~ 247 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQKP 247 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEECC
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEeCC
Confidence 99999999874 336655443 233334568899999999998877777666544322222211 1122222222211
Q ss_pred --hhhHHHHHHHHHHh-cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc
Q 014314 272 --ELEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 348 (427)
Q Consensus 272 --~~~~~~~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 348 (427)
...+...+..++.. ..++++||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 248 ~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 248 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 23344556666653 366899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 349 ~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
++|+|+|++++||++++|.|...|+||+||+||.|++|.|++|+...
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 99999999999999999999999999999999999999999999753
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.4e-52 Score=403.50 Aligned_cols=332 Identities=18% Similarity=0.257 Sum_probs=270.2
Q ss_pred CCCCCCCCCHHHHHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 46 SGFRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
..|+++++++.+.+.|++ .|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++... .++||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~------g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN------GLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS------SEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC------CCEEEECChH
Confidence 368999999999999998 799999999999999999999999999999999999999998652 2799999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~ 201 (427)
+|+.|+.+.++.+ ++.+..++++....... ..+..+.++|+++||+++........+...++++||+||||+
T Consensus 76 aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 76 SLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp HHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 9999999998875 67888888877654433 334456679999999999642211123347889999999999
Q ss_pred cccC-CCcHHHHHH---HHHhCCCCceEEEEEccCCccHHHHHHHhc--CCCeEEEEcCCccccccceEEEEEEechhhH
Q 014314 202 MLES-LDMRRDVQE---IFKMTPHDKQVMMFSATLSKEIRPVCKKFM--QDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (427)
Q Consensus 202 ~~~~-~~~~~~~~~---~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (427)
+.++ .+|++.+.. +.... +..+++++|||+++.....+...+ .++. +....... .++. +.......+
T Consensus 151 i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~r---~~l~--~~v~~~~~~ 223 (523)
T 1oyw_A 151 ISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL-IQISSFDR---PNIR--YMLMEKFKP 223 (523)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE-EEECCCCC---TTEE--EEEEECSSH
T ss_pred cCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCe-EEeCCCCC---CceE--EEEEeCCCH
Confidence 9874 346655444 34444 357899999999987655443333 3343 33332221 2222 222233456
Q ss_pred HHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCC
Q 014314 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (427)
Q Consensus 276 ~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~ 355 (427)
...+..++....++++||||++++.++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 224 ~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCcc
Confidence 67788888877788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
++++||+++.|.|...|+||+||+||.|++|.+++++++.
T Consensus 304 ~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred CccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 9999999999999999999999999999999999999754
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.3e-51 Score=385.71 Aligned_cols=328 Identities=20% Similarity=0.315 Sum_probs=260.5
Q ss_pred HHHHHHHhC-CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 56 ELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 56 ~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
.+.+.+++. |+ .|+|+|.++++.++.++++++++|||||||++|+++++.....+ .++||++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~---~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---CEEEEEECCHHHHHHHHHHH
Confidence 344555553 66 79999999999999999999999999999999999988876332 38999999999999999999
Q ss_pred HHHhccCCCceEEEEEcCcch---HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC------
Q 014314 135 ERFSTYLPDIKVAVFYGGVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------ 205 (427)
Q Consensus 135 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~------ 205 (427)
+.+.. .++++..++|+.+. ..+...+..+.++|+|+||+++.+.+.. ..+.++++||+||||.+..+
T Consensus 85 ~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~ 160 (414)
T 3oiy_A 85 QKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 160 (414)
T ss_dssp HHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHH
T ss_pred HHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhh
Confidence 99876 38899999999987 4455666666579999999999887664 56678999999999987642
Q ss_pred ----CCcHHH-HHHHHHhCC-----------CCceEEEEEcc-CCccHH-HHHHHhcCCCeEEEEcCCccccccceEEEE
Q 014314 206 ----LDMRRD-VQEIFKMTP-----------HDKQVMMFSAT-LSKEIR-PVCKKFMQDPMEIYVDDEAKLTLHGLVQHY 267 (427)
Q Consensus 206 ----~~~~~~-~~~~~~~~~-----------~~~~~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (427)
.+|... +..++..++ ...|++++||| .|.... .+...++.-. .. ........+.+.+
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----VG-RLVSVARNITHVR 235 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC----SS-CCCCCCCSEEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC----cC-ccccccccchhee
Confidence 355555 667776655 77899999999 565443 2333332210 01 1112223334444
Q ss_pred EEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHHhhhcCCCcEEEE--
Q 014314 268 IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA-- 344 (427)
Q Consensus 268 ~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~~~~~vlv~-- 344 (427)
... .+...+..+++.. ++++||||++++.++.+++.|+..|+.+. .+||. +|. ++.|++|+.+||||
T Consensus 236 ~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~ 305 (414)
T 3oiy_A 236 ISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQ 305 (414)
T ss_dssp ESS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEEC
T ss_pred ecc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEec
Confidence 333 4556677777764 48999999999999999999999999998 89984 444 99999999999999
Q ss_pred --eCCccccCCCCC-CCEEEEcCCC--CCchhhhhcccccCCCC----CccEEEEEecCCccHHHHHHHHHHhc
Q 014314 345 --TDLVGRGIDIER-VNIVINYDMP--DSADTYLHRVGRAGRFG----TKGLAITFVSSASDSDILNQVQARFE 409 (427)
Q Consensus 345 --T~~~~~Gld~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (427)
|+++++|+|+|+ +++||++++| .+..+|+||+||+||.| +.|.+++++ ++...++.+++.++
T Consensus 306 s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 306 AYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp CTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred CcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 589999998 56677788888777
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-48 Score=395.09 Aligned_cols=349 Identities=18% Similarity=0.209 Sum_probs=269.7
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhh-hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.|+++++++.+.+.+.+.||..|+++|.++++. +..++++++++|||||||+++.++++..+...+ .+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG--GKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC--SEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC--CEEEEEcCcHH
Confidence 488999999999999999999999999999998 788999999999999999999999987765222 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+++.++++... ++++..++|+....... . +.++|+|+||++|..++.+....+.++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~- 152 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW--L--GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS- 152 (720)
T ss_dssp GHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG--G--GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-
T ss_pred HHHHHHHHHHHHHhc--CCEEEEecCCCCccccc--c--CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC-
Confidence 999999999765543 78999999976543321 1 2369999999999998887766688999999999999976
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEE-----EEec------hhh
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY-----IKLS------ELE 274 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~ 274 (427)
..+...+..++..+....|++++|||+++ ...+...+.... ........+ +...+ .... ...
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~---~~~~~rp~~---l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL---IVSDWRPVK---LRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE---EECCCCSSE---EEEEEEETTEEEETTSCEEECSS
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc---cCCCCCCCc---ceEEEEeCCeeeccccchhhhhH
Confidence 57778888887777668999999999986 344444432111 111110000 01110 1111 122
Q ss_pred HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC---------------------------------CCCeEEecCC
Q 014314 275 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------------------------------NFPSICIHSG 321 (427)
Q Consensus 275 ~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~l~~~ 321 (427)
+...+...+. +++++||||++++.++.+++.|.+. ...+..+||+
T Consensus 226 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 226 WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 3344444443 4589999999999999999998753 1248899999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----cC----CCCCchhhhhcccccCCCC--CccEEEEE
Q 014314 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD----MPDSADTYLHRVGRAGRFG--TKGLAITF 391 (427)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~ 391 (427)
+++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+|||||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999998 65 5889999999999999988 57899999
Q ss_pred ecCCccHHHHHHHHHHhccccccCC
Q 014314 392 VSSASDSDILNQVQARFEVDIKELP 416 (427)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (427)
+...+ ....+++.+..+..++.
T Consensus 384 ~~~~~---~~~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 384 STSDD---PREVMNHYIFGKPEKLF 405 (720)
T ss_dssp CSSSC---HHHHHHHHTTSCCCCCC
T ss_pred ecCcc---HHHHHHHHhcCCCCCcE
Confidence 87654 22233444444444433
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.4e-48 Score=388.67 Aligned_cols=336 Identities=20% Similarity=0.238 Sum_probs=258.4
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhh-hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
...|+++++++.+.+.+.+.||..|+++|.++++. +..++++++++|||||||+++.++++..+...+ .+++|++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~il~i~P~ 84 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG--GKAIYVTPL 84 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--SEEEEECSC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC--CeEEEEeCc
Confidence 34699999999999999999999999999999999 677999999999999999999999987765222 389999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+++.++.+... ++++..++|+....... .. .++|+|+||++|..++++....+.++++||+||+|.+.
T Consensus 85 r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~--~~--~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 85 RALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDAW--LK--NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp HHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCGG--GG--GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred HHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchhh--cC--CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 99999999999655433 78899999876544321 11 36999999999999888876668899999999999987
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceE--------EEEEEec----
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV--------QHYIKLS---- 271 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---- 271 (427)
+ ..+...+..++..++ ..|++++|||+++ ...+...+.. +. +.. .....+..... .......
T Consensus 159 ~-~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 159 D-PERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGA-EP-VAT-NWRPVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp C-TTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTC-EE-EEC-CCCSSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred C-cccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCC-Cc-cCC-CCCCCCceEEEEecCCcccceeeecCcchh
Confidence 6 567777777766555 7899999999985 3444444332 11 110 00000000000 0000011
Q ss_pred -----hhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCC----------------------------------
Q 014314 272 -----ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN---------------------------------- 312 (427)
Q Consensus 272 -----~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~---------------------------------- 312 (427)
.......+...+. .++++||||++++.++.+++.|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 1233344444443 56899999999999999999998642
Q ss_pred --CCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----cC-------CCCCchhhhhccccc
Q 014314 313 --FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD-------MPDSADTYLHRVGRA 379 (427)
Q Consensus 313 --~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~ 379 (427)
..+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+|||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 34889999999999999999999999999999999999999999999998 88 799999999999999
Q ss_pred CCCC--CccEEEEEecCCc
Q 014314 380 GRFG--TKGLAITFVSSAS 396 (427)
Q Consensus 380 ~R~g--~~g~~~~~~~~~~ 396 (427)
||.| ..|.|++++.+.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 9988 4799999987554
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-48 Score=402.75 Aligned_cols=339 Identities=18% Similarity=0.190 Sum_probs=267.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
..|..+++++.+...+...+...|+++|.++++.+..+++++++||||||||++|.+|++..+..+. +++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHH
Confidence 3567777777776677666777899999999999999999999999999999999999998875433 8999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+++.+..+.. .+..++|+.+.. +.++|+|+||++|.+++......+.++++|||||||++.+
T Consensus 239 La~Q~~~~l~~~~~-----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d- 304 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD- 304 (1108)
T ss_dssp HHHHHHHHHHHHTS-----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS-
T ss_pred HHHHHHHHHHHHhC-----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc-
Confidence 99999999998753 677888887633 3369999999999998888777788999999999999987
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCcc--HHHHHHHhcCCCeEEEEcCCccccccceEEEEEE---------ec---
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKE--IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK---------LS--- 271 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--- 271 (427)
.++...+..++..++...|++++|||+|+. +..++......+..+........+. ..++.. ..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl---~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPL---QHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCE---EEEEEETTSSCCEEEEETTT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccc---eEEEeecCCcceeeeecccc
Confidence 578888999999999999999999999875 3355555555555554433222211 111100 00
Q ss_pred -------------------------------------------hhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHH
Q 014314 272 -------------------------------------------ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 308 (427)
Q Consensus 272 -------------------------------------------~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L 308 (427)
...+...+...+......++||||++++.|+.++..|
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHH
Confidence 0122223444444456679999999999999999988
Q ss_pred HhCCCC---------------------------------------eEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc
Q 014314 309 VECNFP---------------------------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (427)
Q Consensus 309 ~~~~~~---------------------------------------~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 349 (427)
...++. +..+||+|++.+|..+++.|++|.++|||||++++
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla 541 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh
Confidence 653222 78899999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCC--------CchhhhhcccccCCCC--CccEEEEEecCCccHHHHHHH
Q 014314 350 RGIDIERVNIVINYDMPD--------SADTYLHRVGRAGRFG--TKGLAITFVSSASDSDILNQV 404 (427)
Q Consensus 350 ~Gld~~~~~~vi~~~~~~--------s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~~~ 404 (427)
+|||+|++++||+++.|+ |..+|+||+|||||.| ..|.|++++.+..+...+..+
T Consensus 542 ~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp SCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred cCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999999877643 6667999999999999 689999999877666554444
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-48 Score=393.42 Aligned_cols=334 Identities=16% Similarity=0.240 Sum_probs=256.1
Q ss_pred CCCCCC--CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 47 GFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 47 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
+|++++ +++.+.+.+.+.||..|+++|.++++.+..++++++++|||||||+++.++++..+..+ .+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CcEEEEeCcH
Confidence 467777 89999999999999999999999999999999999999999999999999999876542 3899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccccc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~ 204 (427)
+|+.|+++.++.+... ++++..++|+....... .+.++|+|+||++|..++++....+.++++||+||+|.+.+
T Consensus 79 ~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 79 ALAGEKYESFKKWEKI--GLRIGISTGDYESRDEH----LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp HHHHHHHHHHTTTTTT--TCCEEEECSSCBCCSSC----STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCCCcchhh----ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC
Confidence 9999999999655432 78999999976543321 12369999999999999888766688999999999999876
Q ss_pred CCCcHHHHHHHHHhC---CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccc-----eEEEEEEe-----c
Q 014314 205 SLDMRRDVQEIFKMT---PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG-----LVQHYIKL-----S 271 (427)
Q Consensus 205 ~~~~~~~~~~~~~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----~ 271 (427)
..+...+..++..+ .+..|++++|||+++ ...+...+. .+. +. ......+... ....+... .
T Consensus 153 -~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~~-~~-~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 153 -EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-ADY-YV-SDWRPVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp -TTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CEE-EE-CCCCSSCEEEEEECSSEEEEEETTEEEEE
T ss_pred -CCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CCc-cc-CCCCCccceEEEeeCCeeeccCcchhhhh
Confidence 45666555554433 567899999999986 345554433 221 11 1111000000 00001110 0
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC------------------------------CCCeEEecCC
Q 014314 272 ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------------------------------NFPSICIHSG 321 (427)
Q Consensus 272 ~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~------------------------------~~~~~~l~~~ 321 (427)
...+...+...+. +++++||||++++.++.+++.|.+. +..+..+||+
T Consensus 228 ~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 228 RVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp ECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 0113444555443 4689999999999999999988753 2457889999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----cC---CCCCchhhhhcccccCCCC--CccEEEEEe
Q 014314 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD---MPDSADTYLHRVGRAGRFG--TKGLAITFV 392 (427)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~ 392 (427)
+++.+|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 55 7889999999999999988 579999998
Q ss_pred cCCc
Q 014314 393 SSAS 396 (427)
Q Consensus 393 ~~~~ 396 (427)
...+
T Consensus 386 ~~~~ 389 (702)
T 2p6r_A 386 GKRD 389 (702)
T ss_dssp CGGG
T ss_pred cCcc
Confidence 7543
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.6e-49 Score=396.74 Aligned_cols=334 Identities=20% Similarity=0.259 Sum_probs=218.3
Q ss_pred HHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC--CCeEEEEEeCchHHHHHHHHHHH
Q 014314 58 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
..++..+|+..|+++|.++++.++.|+++++++|||+|||++|+++++..+...+ ...++||++|+++|+.||.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999987664332 12489999999999999999999
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCCcccccCCCcHHHHHH
Q 014314 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQE 214 (427)
Q Consensus 136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~~~iVvDEah~~~~~~~~~~~~~~ 214 (427)
+++... ++++..++|+.........+..+ ++|+|+||++|.+.+..... .+.++++||+||||++.+...+...+..
T Consensus 83 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 83 KYFERH-GYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHTTTT-TCCEEEECSSSCSSSCHHHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHhccC-CceEEEEeCCccccccHHHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 998654 78999999988665555544444 69999999999998887766 6889999999999999875444444433
Q ss_pred HHHh-----CCCCceEEEEEccCCc-------c-HHHHHHH---------------------hcCCCeEEEEcCCccccc
Q 014314 215 IFKM-----TPHDKQVMMFSATLSK-------E-IRPVCKK---------------------FMQDPMEIYVDDEAKLTL 260 (427)
Q Consensus 215 ~~~~-----~~~~~~~v~~SAT~~~-------~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 260 (427)
++.. ..+..+++++|||+.. . ...+... +...|.............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 3332 2456899999999972 1 1111111 111121111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 014314 261 -------------------------------------------------------------------------------- 260 (427)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (427)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------cceEEEEEE----------------echhhHHHHHHHHHHhc----CCCe
Q 014314 261 ------------------------------HGLVQHYIK----------------LSELEKNRKLNDLLDAL----DFNQ 290 (427)
Q Consensus 261 ------------------------------~~~~~~~~~----------------~~~~~~~~~l~~~l~~~----~~~~ 290 (427)
....+.+.. .....|...+..++... ++++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 01234556666777655 5689
Q ss_pred EEEEECCchhHHHHHHHHHhCC----CCeEEe--------cCCCCHHHHHHHHHhhhc-CCCcEEEEeCCccccCCCCCC
Q 014314 291 VVIFVKSVSRAAELNKLLVECN----FPSICI--------HSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERV 357 (427)
Q Consensus 291 ~ivf~~~~~~~~~l~~~L~~~~----~~~~~l--------~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gld~~~~ 357 (427)
+||||+++..++.+++.|+..+ +++..+ ||+|++.+|..+++.|++ |+.+|||||+++++|+|+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred CEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
++||+||+|+|..+|+||+|| ||. +.|.+++++...
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999999999999999999999 998 789999888753
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.6e-47 Score=375.32 Aligned_cols=329 Identities=20% Similarity=0.241 Sum_probs=197.5
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCC--CeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
+..+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+. ..++||++|+++|+.||.+.+++++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 3458999999999999999999999999999999999999887655431 3489999999999999999999998765
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCCcccccCCCcHHHHHHHHHh---
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM--- 218 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~--- 218 (427)
++++..++|+.........+..+ ++|+|+||+++...+..... .+.++++||+||||.+.++..+...+..++..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 78999999988766555555444 59999999999999888776 78999999999999998743333333333322
Q ss_pred -CCCCceEEEEEccCCcc-----------HHHHHHHh------------------cCCCeEEEEcCCccccc--c-----
Q 014314 219 -TPHDKQVMMFSATLSKE-----------IRPVCKKF------------------MQDPMEIYVDDEAKLTL--H----- 261 (427)
Q Consensus 219 -~~~~~~~v~~SAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~----- 261 (427)
..+..+++++|||++.. +..+...+ ...+............. .
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 13557899999999532 11111111 11111111100000000 0
Q ss_pred ----------ceE--EEEEE------------------------------------------------------------
Q 014314 262 ----------GLV--QHYIK------------------------------------------------------------ 269 (427)
Q Consensus 262 ----------~~~--~~~~~------------------------------------------------------------ 269 (427)
... .....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000 00000
Q ss_pred ----------------------------------------------echhhHHHHHHHHHHh----cCCCeEEEEECCch
Q 014314 270 ----------------------------------------------LSELEKNRKLNDLLDA----LDFNQVVIFVKSVS 299 (427)
Q Consensus 270 ----------------------------------------------~~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~ 299 (427)
.....|...+..++.. ..++++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0012244444555543 45689999999999
Q ss_pred hHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHhhhc-CCCcEEEEeCCccccCCCCCCCEEEEcCCC
Q 014314 300 RAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMP 366 (427)
Q Consensus 300 ~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~ 366 (427)
.++.+++.|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 5555667888999999999999999 999999999999999999999999999999
Q ss_pred CCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 367 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+|+..|+||+|| ||. ++|.+++++...+.
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999 998 88999999986544
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.8e-47 Score=376.14 Aligned_cols=325 Identities=21% Similarity=0.243 Sum_probs=224.0
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC--CCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
+|+++|.++++.++.++++++++|||+|||++|++|++..+.... ...++||++|+++|+.||.+.+++++... +++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcE
Confidence 699999999999999999999999999999999999998876543 13489999999999999999999998765 789
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCCcccccCCCcHHHHHHHHHhC-----
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMT----- 219 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~----- 219 (427)
+..++|+.........+..+ ++|+|+||+++...+..... .+.++++||+||||.+.+...+...+..++...
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIED-NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHH-CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcC-CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999998766555555444 59999999999998887766 788999999999999987444444443443332
Q ss_pred CCCceEEEEEccCCccH--------HHH--HHHhcCCCeEEEEcCCccc----cccceEEEEEEe---------------
Q 014314 220 PHDKQVMMFSATLSKEI--------RPV--CKKFMQDPMEIYVDDEAKL----TLHGLVQHYIKL--------------- 270 (427)
Q Consensus 220 ~~~~~~v~~SAT~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------------- 270 (427)
....+++++|||++... ..+ +...+... .+........ ........+...
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 24578999999996421 111 11111111 1111000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014314 271 -------------------------------------------------------------------------------- 270 (427)
Q Consensus 271 -------------------------------------------------------------------------------- 270 (427)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred -----------------------------------------------chhhHHHHHHHHHHh----cCCCeEEEEECCch
Q 014314 271 -----------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVS 299 (427)
Q Consensus 271 -----------------------------------------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~ 299 (427)
....|...+..++.. .+.+++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 012344445555543 35689999999999
Q ss_pred hHHHHHHHHHhCC------------CCeEEecCCCCHHHHHHHHHhhhc-CCCcEEEEeCCccccCCCCCCCEEEEcCCC
Q 014314 300 RAAELNKLLVECN------------FPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMP 366 (427)
Q Consensus 300 ~~~~l~~~L~~~~------------~~~~~l~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~ 366 (427)
.++.+++.|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||+|
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCC
Confidence 9999999999864 344455669999999999999999 999999999999999999999999999999
Q ss_pred CCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 367 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+|+..|+||+|| ||. +.|.+++|+.+.+.
T Consensus 481 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 481 GNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp SSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred CCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 999999999999 998 89999999975433
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.3e-47 Score=386.51 Aligned_cols=331 Identities=21% Similarity=0.243 Sum_probs=206.2
Q ss_pred hCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC--CCeEEEEEeCchHHHHHHHHHHHHHhcc
Q 014314 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTY 140 (427)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (427)
.+|+..|+++|.++++.++.++++++++|||+|||++|++|++..+.... .+.++||++|+++|+.||.+.+++++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 34788999999999999999999999999999999999999998876543 1348999999999999999999999876
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCCcccccCCCcHHHHHHHHHh-
Q 014314 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM- 218 (427)
Q Consensus 141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~- 218 (427)
. ++++..++|+.........+..+ ++|+|+||+++.+.+..... .+.++++||+||||++.....+...+..+...
T Consensus 323 ~-~~~v~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 323 Q-GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp G-TCCEEEECCC-----CHHHHHHT-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred C-CceEEEEeCCcchhhhHHHhhCC-CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 5 78999999998766655555555 69999999999998887766 68899999999999998743333333333332
Q ss_pred ---CCCCceEEEEEccCCcc-----------HHHHHH------------------HhcCCCeEEEEcCCccc--cc----
Q 014314 219 ---TPHDKQVMMFSATLSKE-----------IRPVCK------------------KFMQDPMEIYVDDEAKL--TL---- 260 (427)
Q Consensus 219 ---~~~~~~~v~~SAT~~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~--~~---- 260 (427)
..+..+++++|||++.. +..+.. .+...+........... ..
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 24568999999999531 111111 11111111110000000 00
Q ss_pred -----------cc---------eEEEEEEe--------------------------------------------------
Q 014314 261 -----------HG---------LVQHYIKL-------------------------------------------------- 270 (427)
Q Consensus 261 -----------~~---------~~~~~~~~-------------------------------------------------- 270 (427)
.. ........
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 00000000
Q ss_pred -------------------------------------------------chhhHHHHHHHHHHh----cCCCeEEEEECC
Q 014314 271 -------------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKS 297 (427)
Q Consensus 271 -------------------------------------------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~ 297 (427)
....|...+..++.. .+++++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 012234444555543 456899999999
Q ss_pred chhHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHhhhc-CCCcEEEEeCCccccCCCCCCCEEEEcC
Q 014314 298 VSRAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYD 364 (427)
Q Consensus 298 ~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gld~~~~~~vi~~~ 364 (427)
+..++.+++.|+.. |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5566677999999999999999999 9999999999999999999999999999
Q ss_pred CCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
+|+|+..|+||+|| ||. +.|.+++|+...+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 998 89999999976543
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-46 Score=380.28 Aligned_cols=321 Identities=20% Similarity=0.236 Sum_probs=254.9
Q ss_pred hCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
..+| .|+++|.++++.+..++++++++|||||||++|.++++..+..+ .++||++|+++|+.|+++.+..+..
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC---
Confidence 3466 49999999999999999999999999999999999988876543 3899999999999999999998763
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
.+..++|+..... .++|+|+||++|.+++.+....+.++++||+||+|.+.+ ..+...+..++..++..
T Consensus 155 --~vglltGd~~~~~--------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 --DVGLMTGDITINP--------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERGVVWEETIILLPDK 223 (1010)
T ss_dssp --CEEEECSSCEECT--------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTHHHHHHHHHHSCTT
T ss_pred --CEEEEeCCCccCC--------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchhHHHHHHHHhcCCC
Confidence 6778888876542 268999999999998887777889999999999999987 57788888899999999
Q ss_pred ceEEEEEccCCccHH--HHHHHhcCCCeEEEEcCCccccccceEEEEEE---------ech-------------------
Q 014314 223 KQVMMFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK---------LSE------------------- 272 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------- 272 (427)
.|++++|||+++... .++......+..+........+ +..++.. ...
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~p---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP---LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSC---EEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc---ceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 999999999987532 3333333445444433222111 1111110 000
Q ss_pred ---------------------------hhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCC-----------
Q 014314 273 ---------------------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP----------- 314 (427)
Q Consensus 273 ---------------------------~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~----------- 314 (427)
......+...+......++||||+++..|+.+++.|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 380 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 111223444444445679999999999999999999775442
Q ss_pred ----------------------------eEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----
Q 014314 315 ----------------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN---- 362 (427)
Q Consensus 315 ----------------------------~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~---- 362 (427)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 381 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~k 460 (1010)
T 2xgj_A 381 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 460 (1010)
T ss_dssp HHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEE
T ss_pred HHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcc
Confidence 778999999999999999999999999999999999999999999999
Q ss_pred cCC----CCCchhhhhcccccCCCCC--ccEEEEEecCCccHHHHHHH
Q 014314 363 YDM----PDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQV 404 (427)
Q Consensus 363 ~~~----~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~ 404 (427)
||. |.|+.+|.||+||+||.|. .|.|++++.+..+...+..+
T Consensus 461 fd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 461 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp ECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred cCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 8899999999999999996 59999999876555544444
No 28
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-46 Score=385.93 Aligned_cols=330 Identities=21% Similarity=0.247 Sum_probs=206.5
Q ss_pred CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCC--CeEEEEEeCchHHHHHHHHHHHHHhccC
Q 014314 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYL 141 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~ 141 (427)
.|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+..... +.++||++|+++|+.||.+++++++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 46779999999999999999999999999999999999999988766431 3489999999999999999999998765
Q ss_pred CCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCCcccccCCCcHHHHHHHHHh--
Q 014314 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM-- 218 (427)
Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~-- 218 (427)
++++..++|+.........+..+ ++|+|+||+++.+.+..... .+.++++||+||||++.....+...+..+...
T Consensus 324 -~~~v~~~~G~~~~~~~~~~~~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 324 -GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp -TCCEEEECCC-----CCHHHHHH-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred -CceEEEEECCcchhhHHHHhccC-CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 78999999988665544444433 59999999999998887766 67889999999999998743444444344332
Q ss_pred --CCCCceEEEEEccCCcc-----------HHHHHH------------------HhcCCCeEEEEcCCcccc--cc----
Q 014314 219 --TPHDKQVMMFSATLSKE-----------IRPVCK------------------KFMQDPMEIYVDDEAKLT--LH---- 261 (427)
Q Consensus 219 --~~~~~~~v~~SAT~~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~--~~---- 261 (427)
..+..+++++|||+... +..+.. .+...+............ ..
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 24568899999999531 111111 111122111111000000 00
Q ss_pred -----------c---------eEEEEEEe---------------------------------------------------
Q 014314 262 -----------G---------LVQHYIKL--------------------------------------------------- 270 (427)
Q Consensus 262 -----------~---------~~~~~~~~--------------------------------------------------- 270 (427)
. ........
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0 00000000
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHh----cCCCeEEEEECCc
Q 014314 271 ------------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSV 298 (427)
Q Consensus 271 ------------------------------------------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~~ 298 (427)
....|...+..++.. ..++++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 012233444455554 3468999999999
Q ss_pred hhHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHhhhc-CCCcEEEEeCCccccCCCCCCCEEEEcCC
Q 014314 299 SRAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDM 365 (427)
Q Consensus 299 ~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gld~~~~~~vi~~~~ 365 (427)
+.++.+++.|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999986 5556667899999999999999999 99999999999999999999999999999
Q ss_pred CCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
|+|+..|+||+|| ||. +.|.+++++...+.
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999 998 78999999876443
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.1e-46 Score=388.23 Aligned_cols=320 Identities=20% Similarity=0.329 Sum_probs=255.9
Q ss_pred CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.|| .|+++|.++++.++.|++++++||||||||++++++++..+..+ .++||++||++|+.|+++.++.+. . .+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~---~~~Lil~PtreLa~Q~~~~l~~l~-~-~~ 148 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKLA-D-EK 148 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHTTS-C-TT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---CeEEEEechHHHHHHHHHHHHHhh-C-CC
Confidence 577 69999999999999999999999999999999888888777432 389999999999999999999976 3 48
Q ss_pred ceEEEEEcCcch---HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC----------CCcHH
Q 014314 144 IKVAVFYGGVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRR 210 (427)
Q Consensus 144 ~~~~~~~g~~~~---~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~----------~~~~~ 210 (427)
+++..++|+.+. ..+...+.++.++|+|+||++|.+++.. ..+.++++||+||||.+..+ .+|..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999987 5666777777689999999999887664 56778999999999976642 35555
Q ss_pred H-HHHHHHhCC-----------CCceEEEEEcc-CCccHHH-HHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHH
Q 014314 211 D-VQEIFKMTP-----------HDKQVMMFSAT-LSKEIRP-VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 276 (427)
Q Consensus 211 ~-~~~~~~~~~-----------~~~~~v~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (427)
. +..++..++ ...|++++||| .|..+.. +....+. +.+.. .......+.+.+... .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~-~~~~~~~i~~~~~~~---~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-LVSVARNITHVRISS---RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB-CCCCCCCEEEEEESC---CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc-CCCCcCCceeEEEec---CHH
Confidence 5 677777665 77899999999 5555432 2333322 11111 112233444444433 455
Q ss_pred HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHHhhhcCCCcEEEE----eCCcccc
Q 014314 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRG 351 (427)
Q Consensus 277 ~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~~~~~vlv~----T~~~~~G 351 (427)
..+..++... ++++||||++++.++.+++.|+..|+.+. .+|| +|.+ ++.|++|+.+|||| |+++++|
T Consensus 299 ~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 6667777774 48999999999999999999999999998 9999 2555 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEcCCCC---------------------------------------------------------------
Q 014314 352 IDIER-VNIVINYDMPD--------------------------------------------------------------- 367 (427)
Q Consensus 352 ld~~~-~~~vi~~~~~~--------------------------------------------------------------- 367 (427)
+|+|+ +++||++|+|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------CchhhhhcccccCCCCC----ccEEEEEecCCccHHHHHHHHHHhc
Q 014314 368 ---------SADTYLHRVGRAGRFGT----KGLAITFVSSASDSDILNQVQARFE 409 (427)
Q Consensus 368 ---------s~~~~~Q~~GR~~R~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (427)
++.+|+||+||+||.|. .|.+++++ ++...++.|++.+.
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 77799999999999654 45666666 56778888888774
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-45 Score=359.07 Aligned_cols=324 Identities=19% Similarity=0.285 Sum_probs=247.1
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.|+|+|.++++.++.+ ++++++|||+|||+++++++...+.. ...++||++|+++|+.||.+++.++... +..++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheE
Confidence 6899999999999999 99999999999999999998887641 2238999999999999999999998743 355889
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
.++|+............ ++|+|+||+.+...+......+.++++||+||||.+.+. .....+...+....+..++++
T Consensus 85 ~~~g~~~~~~~~~~~~~--~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~-~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWAR--AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN-YAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EECSCSCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTT-CHHHHHHHHHHHHCSSCCEEE
T ss_pred EeeCCcchhhhhhhccC--CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCC-CcHHHHHHHHHhcCCCCeEEE
Confidence 99998876654443333 599999999999988887778899999999999999863 333444444544556788999
Q ss_pred EEccCCccHH---HHHHHhcCCCeEEEEcCCcc--ccccceEEEEEEe--------------------------------
Q 014314 228 FSATLSKEIR---PVCKKFMQDPMEIYVDDEAK--LTLHGLVQHYIKL-------------------------------- 270 (427)
Q Consensus 228 ~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------- 270 (427)
+|||+..... .+...+.............. .........+...
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999985433 33332221111111000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014314 271 -------------------------------------------------------------------------------- 270 (427)
Q Consensus 271 -------------------------------------------------------------------------------- 270 (427)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------chhhHHHHHHHHHHh----cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecC--------
Q 014314 271 ------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS-------- 320 (427)
Q Consensus 271 ------------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~-------- 320 (427)
....|...+.+++.. ..++++||||+++..++.+++.|...|+.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 112244555566655 46789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHH
Q 014314 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 399 (427)
Q Consensus 321 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 399 (427)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|.||+||+||.|+ |.++.++...+..+
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 99999998765443
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.6e-44 Score=351.50 Aligned_cols=323 Identities=19% Similarity=0.227 Sum_probs=249.9
Q ss_pred hCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
..|+ +|+++|..+++.++.|+ +..++||+|||++|.+|++.....+ ..++||+||++||.|.++++..+....
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g---~~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG---KGVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 4699 99999999999999998 9999999999999999998544332 279999999999999999999999887
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCCcccccCC---------
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL--------- 206 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~------~~~~~~~~~iVvDEah~~~~~~--------- 206 (427)
++++.+++||.+...+...+ + ++|+|+||+.| +.+++.+ ...++.+.++|+||||.++-+.
T Consensus 152 gl~v~~i~gg~~~~~r~~~~--~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAY--A-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHhc--C-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 89999999998766554443 2 69999999999 6666543 3557889999999999987222
Q ss_pred ------CcHHHHHHHHHhCC---------CCceEE-----------------EEEccCCcc---HHHHH--HHhcC-CCe
Q 014314 207 ------DMRRDVQEIFKMTP---------HDKQVM-----------------MFSATLSKE---IRPVC--KKFMQ-DPM 248 (427)
Q Consensus 207 ------~~~~~~~~~~~~~~---------~~~~~v-----------------~~SAT~~~~---~~~~~--~~~~~-~~~ 248 (427)
+|...+..+...++ +.+|+. ++|||.+.. +...+ ..++. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 36778888888886 367777 889997643 22222 11221 111
Q ss_pred EEE-------Ec-----------------------------CCcc-----------------------------------
Q 014314 249 EIY-------VD-----------------------------DEAK----------------------------------- 257 (427)
Q Consensus 249 ~~~-------~~-----------------------------~~~~----------------------------------- 257 (427)
.+. ++ ....
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 110 00 0000
Q ss_pred ----------ccccce-EEEEEEechhhHHHHHHHHHHh--cCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCH
Q 014314 258 ----------LTLHGL-VQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324 (427)
Q Consensus 258 ----------~~~~~~-~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~ 324 (427)
.+.... ....+......|...+...+.. ..+.++||||+|++.++.+++.|...|+++..+||++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 000000 0113445667788888777754 246789999999999999999999999999999999887
Q ss_pred HHHHHHHHhhhcCCCcEEEEeCCccccCCCC--------CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCc
Q 014314 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 325 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
.+|..+...|+.| .|+|||++++||+|++ ++.+||+++.|.|...|+||+||+||.|++|.++.|++..+
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 7777665566554 6999999999999999 78899999999999999999999999999999999998765
Q ss_pred c
Q 014314 397 D 397 (427)
Q Consensus 397 ~ 397 (427)
+
T Consensus 547 ~ 547 (844)
T 1tf5_A 547 E 547 (844)
T ss_dssp S
T ss_pred H
Confidence 4
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-45 Score=382.37 Aligned_cols=325 Identities=18% Similarity=0.281 Sum_probs=249.3
Q ss_pred HHHHHh-CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 58 LRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 58 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.+.+.+ .||. | ++|.++++.++.|+++++++|||||||+ |.+|++..+... ++++||++||++|+.|+.+.++.
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHH
Confidence 344544 6999 9 9999999999999999999999999998 788888766543 24899999999999999999999
Q ss_pred HhccCCCc----eEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcH
Q 014314 137 FSTYLPDI----KVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR 209 (427)
Q Consensus 137 ~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~ 209 (427)
++... ++ ++..++|+.+...+ ...+.+ ++|+|+||++|..++.+ +.++++||+||||++++ +.
T Consensus 122 l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~---~~ 191 (1054)
T 1gku_B 122 YAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK---AS 191 (1054)
T ss_dssp HHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT---ST
T ss_pred HHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh---cc
Confidence 98765 66 89999999877653 233334 69999999999987664 67899999999999976 45
Q ss_pred HHHHHHHHhC-----------CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHH
Q 014314 210 RDVQEIFKMT-----------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK 278 (427)
Q Consensus 210 ~~~~~~~~~~-----------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (427)
..+..++..+ +...|++++|||++.. ..+...++..+..+.+... ......+.+.+. ...+...
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~-~~~~~~i~~~~~---~~~k~~~ 266 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS-RITVRNVEDVAV---NDESIST 266 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC-EECCCCEEEEEE---SCCCTTT
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc-ccCcCCceEEEe---chhHHHH
Confidence 6666666655 3457899999999876 4222222222221111111 112233333333 3445566
Q ss_pred HHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEE----eCCccccCCC
Q 014314 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRGIDI 354 (427)
Q Consensus 279 l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~----T~~~~~Gld~ 354 (427)
+..++... ++++||||++++.++.+++.|+.. +++..+||++. .+++.|++|+.+|||| |+++++|+|+
T Consensus 267 L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDi 339 (1054)
T 1gku_B 267 LSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339 (1054)
T ss_dssp THHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCC
T ss_pred HHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecccc
Confidence 67777665 478999999999999999999988 99999999983 6788899999999999 8999999999
Q ss_pred CCC-CEEEEcCCC-------------------------------------------------------------------
Q 014314 355 ERV-NIVINYDMP------------------------------------------------------------------- 366 (427)
Q Consensus 355 ~~~-~~vi~~~~~------------------------------------------------------------------- 366 (427)
|+| ++||+++.|
T Consensus 340 p~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 419 (1054)
T 1gku_B 340 PERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREG 419 (1054)
T ss_dssp TTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETT
T ss_pred CCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeec
Confidence 996 999999999
Q ss_pred ----CCchhhhhcccccCCCCCccE--EEEEecCCccHHHHHHHHHHhcc
Q 014314 367 ----DSADTYLHRVGRAGRFGTKGL--AITFVSSASDSDILNQVQARFEV 410 (427)
Q Consensus 367 ----~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~~~~~~~~~~~~~~~~ 410 (427)
.|..+|+||+||+||.|..|. +++++.. ++...++.+++.++.
T Consensus 420 ~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~-~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 420 EVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE-DDSELLSAFIERAKL 468 (1054)
T ss_dssp EEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC-SCHHHHHHHHHHHHT
T ss_pred ceecCcHHHHhhhhchhhhccCCCCceEEEEEEe-cCHHHHHHHHHHHhh
Confidence 789999999999999877763 6766653 467788888888774
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.9e-44 Score=367.05 Aligned_cols=322 Identities=19% Similarity=0.231 Sum_probs=247.9
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
+| .|+++|.++++.++.|+++++++|||||||++|++++...+..+ .+++|++|+++|+.|+++.++.+. +++
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~---~~~ 109 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETF---DDV 109 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHc---CCC
Confidence 45 58999999999999999999999999999999998888765433 389999999999999999888764 367
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCce
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~ 224 (427)
++..++|+.... +.++|+|+||+.|.+.+......+.++++||+||||++.+ .++...+..++..++...|
T Consensus 110 ~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 110 NIGLITGDVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp CEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCCHHHHHHHSCTTCE
T ss_pred eEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHHHHHHHHhcccCCC
Confidence 899999987643 2369999999999998887777788999999999999887 5777788889999999999
Q ss_pred EEEEEccCCccHHHHHHHhc---CCCeEEEEcCCccccccceEE------------------------------------
Q 014314 225 VMMFSATLSKEIRPVCKKFM---QDPMEIYVDDEAKLTLHGLVQ------------------------------------ 265 (427)
Q Consensus 225 ~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------------------------------------ 265 (427)
++++|||+++.. .+..++. ..+..+........+......
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 999999998653 3333332 122222211111100000000
Q ss_pred ------------------------------------------------------EEEEechhhHHHHHHHHHHhcCCCeE
Q 014314 266 ------------------------------------------------------HYIKLSELEKNRKLNDLLDALDFNQV 291 (427)
Q Consensus 266 ------------------------------------------------------~~~~~~~~~~~~~l~~~l~~~~~~~~ 291 (427)
+........+...+...+......++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~ 339 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPM 339 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCE
Confidence 00000122234556666777777899
Q ss_pred EEEECCchhHHHHHHHHHhCCC---------------------------------------CeEEecCCCCHHHHHHHHH
Q 014314 292 VIFVKSVSRAAELNKLLVECNF---------------------------------------PSICIHSGMSQEERLTRYK 332 (427)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~l~~~~~~~~r~~~~~ 332 (427)
||||++++.|+.++..|...++ .+..+||+|++.+|..+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 9999999999999999977665 5789999999999999999
Q ss_pred hhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCC---------CchhhhhcccccCCCC--CccEEEEEec-CCccHHH
Q 014314 333 GFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD---------SADTYLHRVGRAGRFG--TKGLAITFVS-SASDSDI 400 (427)
Q Consensus 333 ~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~g~~~~~~~-~~~~~~~ 400 (427)
.|++|.++|||||+++++|+|+|+ ..||+++.+. |..+|+||+|||||.| ..|.+++++. ...+...
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~ 498 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIAT 498 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHH
T ss_pred HHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHH
Confidence 999999999999999999999999 6667666655 9999999999999998 5677887774 3344444
Q ss_pred HHHH
Q 014314 401 LNQV 404 (427)
Q Consensus 401 ~~~~ 404 (427)
++.+
T Consensus 499 ~~~~ 502 (997)
T 4a4z_A 499 FKEV 502 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=371.71 Aligned_cols=321 Identities=21% Similarity=0.274 Sum_probs=221.0
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC---CCeEEEEEeCchHHHHHH-HHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQI-CHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~-~~~~~~~~~~~~~ 143 (427)
.|+++|.++++.++.|+++++++|||+|||++|++|++..+.... ...++||++|+++|+.|| .+++++++.. +
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--C
Confidence 799999999999999999999999999999999999988654321 113799999999999999 9999998754 4
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHH------hcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHH
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA------RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~ 217 (427)
+++..++|+.........+... ++|+|+||++|.+.+ ......+..+++||+||||++.....+...+..++.
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~-~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHS-CSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcC-CCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 7999999987765544444444 699999999999877 344567789999999999988653333333332222
Q ss_pred h-------------CCCCceEEEEEccCCcc-----------HHHHHHHhcC------------------CCeEEEEcCC
Q 014314 218 M-------------TPHDKQVMMFSATLSKE-----------IRPVCKKFMQ------------------DPMEIYVDDE 255 (427)
Q Consensus 218 ~-------------~~~~~~~v~~SAT~~~~-----------~~~~~~~~~~------------------~~~~~~~~~~ 255 (427)
. ..+..+++++|||+... +..+...+.. .|........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 11557899999999863 1222221111 1111100000
Q ss_pred cccc----------------------ccceE-------------------------------------------------
Q 014314 256 AKLT----------------------LHGLV------------------------------------------------- 264 (427)
Q Consensus 256 ~~~~----------------------~~~~~------------------------------------------------- 264 (427)
.... .....
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000
Q ss_pred ----------------------EEEEEec--------------------------hhhHHHHHHHHHHh----cC-CCeE
Q 014314 265 ----------------------QHYIKLS--------------------------ELEKNRKLNDLLDA----LD-FNQV 291 (427)
Q Consensus 265 ----------------------~~~~~~~--------------------------~~~~~~~l~~~l~~----~~-~~~~ 291 (427)
....... ...|...+..++.. .+ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 0000000 00111111222222 23 7899
Q ss_pred EEEECCchhHHHHHHHHHhC------CCCeEEecCC--------CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCC
Q 014314 292 VIFVKSVSRAAELNKLLVEC------NFPSICIHSG--------MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (427)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~~------~~~~~~l~~~--------~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~ 357 (427)
||||++++.++.+++.|+.. |+++..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|++
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999987 8999999999 999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCchhhhhcccccCCCCCccEEEEEec
Q 014314 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
++||+||+|+|+..|+||+||+||.| +.+++++.
T Consensus 484 ~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 484 NIVIRYGLVTNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp CCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 99999999999999999999987765 44444444
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.4e-43 Score=376.24 Aligned_cols=335 Identities=17% Similarity=0.202 Sum_probs=249.7
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (427)
+.+...+++...+|..++|+|.++++.++. +++++++||||||||+++.++++..+...++. +++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~-kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTC-CEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCC-EEEEEcChHHHHHHHH
Confidence 445677888888999999999999999987 56799999999999999999999987654433 8999999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccEEEEcCCcccccCCCcH
Q 014314 132 HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMR 209 (427)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~--~~~~~~~iVvDEah~~~~~~~~~ 209 (427)
+.+++......++++..++|+...... ...+ ++|+||||++|..++++... .++++++||+||+|.+.+ ..+
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~~~--~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d--~rg 1063 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK--LLGK--GNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG--ENG 1063 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH--HHHH--CSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS--TTH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh--hcCC--CCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC--CCC
Confidence 999865443337899999998654322 2222 59999999999888876432 367899999999998876 344
Q ss_pred HHHHHH-------HHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEE-EEcCCccccccceEEEEEEechh---hH---
Q 014314 210 RDVQEI-------FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI-YVDDEAKLTLHGLVQHYIKLSEL---EK--- 275 (427)
Q Consensus 210 ~~~~~~-------~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~--- 275 (427)
..+..+ ....++..|+|++|||+++ ..+++.++...+... .+..... + ..+..+....... .+
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R-P-vpL~~~i~~~~~~~~~~~~~~ 1140 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR-P-VPLELHIQGFNISHTQTRLLS 1140 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC-S-SCEEEEEEEECCCSHHHHHHT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC-C-CCeEEEEEeccCCCchhhhhh
Confidence 443333 3446678999999999985 456666654433222 2222211 1 2222222222211 11
Q ss_pred -HHHHHHHH-HhcCCCeEEEEECCchhHHHHHHHHHhC----------------------------------CCCeEEec
Q 014314 276 -NRKLNDLL-DALDFNQVVIFVKSVSRAAELNKLLVEC----------------------------------NFPSICIH 319 (427)
Q Consensus 276 -~~~l~~~l-~~~~~~~~ivf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~l~ 319 (427)
...+...+ ...+.+++||||++++.|+.++..|... ...+..+|
T Consensus 1141 ~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1141 MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 11222223 3446789999999999999887766431 23578899
Q ss_pred CCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----c------CCCCCchhhhhcccccCCCCC--ccE
Q 014314 320 SGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----Y------DMPDSADTYLHRVGRAGRFGT--KGL 387 (427)
Q Consensus 320 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~g~--~g~ 387 (427)
++|++.+|..+.+.|++|.++|||||+++++|+|+|..++||. | ..|.+..+|.||+|||||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999888883 2 235689999999999999986 689
Q ss_pred EEEEecCCcc
Q 014314 388 AITFVSSASD 397 (427)
Q Consensus 388 ~~~~~~~~~~ 397 (427)
+++++.+.+.
T Consensus 1301 avll~~~~~~ 1310 (1724)
T 4f92_B 1301 CVIMCQGSKK 1310 (1724)
T ss_dssp EEEEEEGGGH
T ss_pred EEEEecchHH
Confidence 9999875443
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.9e-44 Score=354.68 Aligned_cols=318 Identities=22% Similarity=0.251 Sum_probs=236.9
Q ss_pred HHHHHHHHhCCCCCCchHHHHhHhhhhcC------CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHH
Q 014314 55 PELLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (427)
Q Consensus 55 ~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (427)
+.+.+.+...+| .|+++|+++++.++.+ ++++++||||||||++|+++++..+..+ .+++|++||++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 445555677899 8999999999999875 5899999999999999999999876543 38999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 129 QICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 129 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+++.+.++.... ++++..++|+...... ...+.++.++|+|+||+.+.. ...+.++++||+||+|++..
T Consensus 432 Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~- 504 (780)
T 1gm5_A 432 QHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGV- 504 (780)
T ss_dssp HHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhH-
Confidence 9999999998765 7899999999876554 334556668999999987754 45678999999999998743
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHH-
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD- 284 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 284 (427)
..+ ..+.......++++||||+.+...... ...+.....+..... ....+.... ... .+...+...+.
T Consensus 505 -~qr----~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~-~r~~i~~~~--~~~-~~~~~l~~~i~~ 573 (780)
T 1gm5_A 505 -KQR----EALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPP-GRKEVQTML--VPM-DRVNEVYEFVRQ 573 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCS-SCCCCEECC--CCS-STHHHHHHHHHH
T ss_pred -HHH----HHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCC-CCcceEEEE--ecc-chHHHHHHHHHH
Confidence 111 112222346889999999876544332 222221111111100 001111111 112 22233333333
Q ss_pred hc-CCCeEEEEECCch--------hHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccC
Q 014314 285 AL-DFNQVVIFVKSVS--------RAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (427)
Q Consensus 285 ~~-~~~~~ivf~~~~~--------~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 352 (427)
.. .+++++|||++.+ .+..+++.|.+ .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 32 4578999999764 57788888887 478899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-CchhhhhcccccCCCCCccEEEEEecC
Q 014314 353 DIERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 353 d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|+|++++||+++.|. +.+.+.||+||+||.|+.|.|++++.+
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999986 788899999999999999999999873
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=8.4e-42 Score=356.08 Aligned_cols=324 Identities=19% Similarity=0.172 Sum_probs=249.1
Q ss_pred CCCCCHHHHHHHHh-CCCCCCchHHHHhHhhhhc----CC--eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 50 DFLLKPELLRAIVD-SGFEHPSEVQHECIPQAIL----GM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~----~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
.++.++...+.+.. .+|. ++|+|.++++.++. ++ +++++++||+|||++++.+++.....+. +++|++|
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~---~vlvlvP 660 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK---QVAVLVP 660 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC---EEEEECS
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC---eEEEEec
Confidence 34566666666654 4775 79999999999987 55 8999999999999999988877665433 8999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCC
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDEC 199 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEa 199 (427)
|++|+.|+++.+.++.... ++++..+++..+.... ...+..+.++|+|+||+.+. ....+.++++||+||+
T Consensus 661 t~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 661 TTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp SHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESG
T ss_pred hHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEech
Confidence 9999999999999877654 6788888876655433 33455666899999998663 3457889999999999
Q ss_pred cccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHH
Q 014314 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL 279 (427)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (427)
|++.. .....++.+....+++++|||+.+.........+.++..+...+. ....+......... ....
T Consensus 735 H~~g~------~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~---~r~~i~~~~~~~~~---~~i~ 802 (1151)
T 2eyq_A 735 HRFGV------RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA---RRLAVKTFVREYDS---MVVR 802 (1151)
T ss_dssp GGSCH------HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC---BCBCEEEEEEECCH---HHHH
T ss_pred HhcCh------HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC---CccccEEEEecCCH---HHHH
Confidence 98632 233444455567899999999987765555444433322221111 11122222222222 2222
Q ss_pred HHHHHh-cCCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 280 NDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 280 ~~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
..++.. ..+++++|||++++.++.+++.|++. +.++..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 803 ~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~ 882 (1151)
T 2eyq_A 803 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 882 (1151)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTT
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccC
Confidence 333333 25689999999999999999999987 889999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCC-CCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 357 VNIVINYDM-PDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 357 ~~~vi~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
+++||+++. +++..+|.||+||+||.|+.|.|++++.+.
T Consensus 883 v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 883 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999988 568999999999999999999999998653
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.3e-42 Score=336.86 Aligned_cols=320 Identities=18% Similarity=0.209 Sum_probs=225.7
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|..+++.++.|+ +..++||+|||++|.+|++.....+ ..++|++||++||.|.++++..+.... ++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g---~~vlVltPTreLA~Q~~e~~~~l~~~l-gl 144 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAENNRPLFEFL-GL 144 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS---SCCEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC---CcEEEEcCCHHHHHHHHHHHHHHHHhc-CC
Confidence 54 89999999999999997 9999999999999999998654432 378999999999999999999999887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCCcccccCC-----------
Q 014314 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLESL----------- 206 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~~------~~~~~~~~iVvDEah~~~~~~----------- 206 (427)
++.+++||.+.......+ + ++|+|+||+.| +.+++.+. ..++.++++|+||||.++.+.
T Consensus 145 ~v~~i~GG~~~~~r~~~~--~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~ 221 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAY--A-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPA 221 (853)
T ss_dssp CEEECCTTCCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-
T ss_pred eEEEEeCCCCHHHHHHhc--C-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCC
Confidence 999999998765443333 3 69999999999 77776542 557899999999999998322
Q ss_pred ----CcHHHHHHHHHhCCC--------------------CceEE------------------------EEEccCCcc---
Q 014314 207 ----DMRRDVQEIFKMTPH--------------------DKQVM------------------------MFSATLSKE--- 235 (427)
Q Consensus 207 ----~~~~~~~~~~~~~~~--------------------~~~~v------------------------~~SAT~~~~--- 235 (427)
++...+..++..++. .+|+. ++|||.+..
T Consensus 222 ~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~ 301 (853)
T 2fsf_A 222 EDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHH 301 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHH
Confidence 245566666666653 34543 789987542
Q ss_pred HHHHH--HHhcCC---------------------------------C----eEEEEcCCccccccceE------------
Q 014314 236 IRPVC--KKFMQD---------------------------------P----MEIYVDDEAKLTLHGLV------------ 264 (427)
Q Consensus 236 ~~~~~--~~~~~~---------------------------------~----~~~~~~~~~~~~~~~~~------------ 264 (427)
+...+ ..++.. + ..+.+..... ....+.
T Consensus 302 i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~-tla~It~qnyfr~Y~kl~ 380 (853)
T 2fsf_A 302 VTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQ-TLASITFQNYFRLYEKLA 380 (853)
T ss_dssp -------------------------------------------------------CCCCCE-EEEEEEHHHHHTTSSEEE
T ss_pred HHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccc-ccceeehHHHHhhhhhhh
Confidence 21111 111100 0 0011100000 000000
Q ss_pred -----------------------------------EEEEEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHH
Q 014314 265 -----------------------------------QHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKL 307 (427)
Q Consensus 265 -----------------------------------~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~ 307 (427)
+..+......|...+...+... .+.++||||+|++.++.+++.
T Consensus 381 GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~ 460 (853)
T 2fsf_A 381 GMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNE 460 (853)
T ss_dssp EEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHH
Confidence 1123446677888888777542 567899999999999999999
Q ss_pred HHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCC------------------------------
Q 014314 308 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------ 357 (427)
Q Consensus 308 L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~------------------------------ 357 (427)
|++.|+++..+||++.+.++..+..+|+.| .|+|||++++||+|++..
T Consensus 461 L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (853)
T 2fsf_A 461 LTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHD 538 (853)
T ss_dssp HHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhh
Confidence 999999999999998888888888888887 599999999999999874
Q ss_pred -------CEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 358 -------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 358 -------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
.+||+++.|.|...|.||.||+||.|.+|.++.|++..++
T Consensus 539 ~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 539 AVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999986554
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.8e-43 Score=375.13 Aligned_cols=331 Identities=24% Similarity=0.334 Sum_probs=245.9
Q ss_pred CCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCC--------CCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 65 GFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEP--------NPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~--------~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
||+.|+++|.++++.++. +++++++||||||||+++.++++..+.. ...+.++||++|+++|+.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999886 7889999999999999999999987642 1234589999999999999999999
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccEEEEcCCcccccCCCcHHHHH
Q 014314 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMRRDVQ 213 (427)
Q Consensus 136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~--~~~~~~~iVvDEah~~~~~~~~~~~~~ 213 (427)
+.+... +++|..++|+....... . ..++|+||||+++..++++... .++++++||+||+|.+.+ ..+..++
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d--~RG~~lE 228 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD--DRGPVLE 228 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS--TTHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC--ccHHHHH
Confidence 877765 89999999987654321 1 1269999999999877766432 368899999999997765 3444444
Q ss_pred HHH-------HhCCCCceEEEEEccCCccHHHHHHHhcCCCe--EEEEcCCccccccceEEEEEEechh---hHHHHHH-
Q 014314 214 EIF-------KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTLHGLVQHYIKLSEL---EKNRKLN- 280 (427)
Q Consensus 214 ~~~-------~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~- 280 (427)
.++ ...+...|+|++|||+|+ ..+++.++...+. ...+.... .+..+.+.+...... .+...+.
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG--CSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC--ccCccEEEEeccCCcchhhhhHHHHH
Confidence 332 345678899999999985 4556555433221 11222211 112233333332221 1222222
Q ss_pred ---HHH-HhcCCCeEEEEECCchhHHHHHHHHHhC-------------------------------------CCCeEEec
Q 014314 281 ---DLL-DALDFNQVVIFVKSVSRAAELNKLLVEC-------------------------------------NFPSICIH 319 (427)
Q Consensus 281 ---~~l-~~~~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~l~ 319 (427)
..+ +...++++||||++++.|+.+++.|.+. ...++.+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 222 2235678999999999999888877531 23478899
Q ss_pred CCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE----cCC------CCCchhhhhcccccCCCC--CccE
Q 014314 320 SGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDM------PDSADTYLHRVGRAGRFG--TKGL 387 (427)
Q Consensus 320 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~g--~~g~ 387 (427)
|+|++.+|..+.+.|++|.++|||||+++++|+|+|..++||. |++ |.++.+|.||+|||||.| ..|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999885 433 458999999999999987 4799
Q ss_pred EEEEecCCccHHHHHHHH
Q 014314 388 AITFVSSASDSDILNQVQ 405 (427)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~ 405 (427)
+++++...+...+...+.
T Consensus 466 ~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 466 GILITSHGELQYYLSLLN 483 (1724)
T ss_dssp EEEEEESTTCCHHHHHTT
T ss_pred EEEEecchhHHHHHHHHc
Confidence 999988766666555443
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.5e-41 Score=331.34 Aligned_cols=322 Identities=21% Similarity=0.246 Sum_probs=250.7
Q ss_pred CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.|+ +|+++|..+++.++.|+ +..++||+|||++|.+|++.....+. .++|++||++||.|.++++..+...+ +
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~---~v~VvTpTreLA~Qdae~m~~l~~~l-G 180 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN---GVHIVTVNDYLAKRDSEWMGRVHRFL-G 180 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 488 99999999999999997 99999999999999999975444332 79999999999999999999999887 8
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCCcccccC-----------
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES----------- 205 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~------~~~~~~~~~iVvDEah~~~~~----------- 205 (427)
+++.+++||.+.......+. ++|+|+||+.| +.+++.+ ...++.+.++|+||||.++.+
T Consensus 181 Lsv~~i~gg~~~~~r~~~y~---~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 181 LQVGVILATMTPDERRVAYN---ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp CCEEECCTTCCHHHHHHHHH---SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred CeEEEEeCCCCHHHHHHhcC---CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 99999999987655444442 59999999999 6777654 356788999999999999832
Q ss_pred ----CCcHHHHHHHHHhCC---------CCceEE-----------------EEEccCCcc---HHHHHH--HhcC-CCe-
Q 014314 206 ----LDMRRDVQEIFKMTP---------HDKQVM-----------------MFSATLSKE---IRPVCK--KFMQ-DPM- 248 (427)
Q Consensus 206 ----~~~~~~~~~~~~~~~---------~~~~~v-----------------~~SAT~~~~---~~~~~~--~~~~-~~~- 248 (427)
.+|...+..+...++ +.+|+. ++|||.+.. +...++ .++. +..
T Consensus 258 ~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dY 337 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDY 337 (922)
T ss_dssp CCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTE
T ss_pred CCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccce
Confidence 246788889999887 678888 889998753 222221 1221 111
Q ss_pred ------EEEEcCCccc----------------------------cccce-------------------------------
Q 014314 249 ------EIYVDDEAKL----------------------------TLHGL------------------------------- 263 (427)
Q Consensus 249 ------~~~~~~~~~~----------------------------~~~~~------------------------------- 263 (427)
.+.++..... ....+
T Consensus 338 iV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~ 417 (922)
T 1nkt_A 338 IVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK 417 (922)
T ss_dssp EECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred eeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC
Confidence 1111100000 00000
Q ss_pred ----------------EEEEEEechhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHH
Q 014314 264 ----------------VQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQE 325 (427)
Q Consensus 264 ----------------~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~ 325 (427)
....+......|...+...+... .+.++||||+|++.++.+++.|++.|+++..+||+....
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 01123345566777777766542 567899999999999999999999999999999998777
Q ss_pred HHHHHHHhhhcCCCcEEEEeCCccccCCCCCC------------------------------------------------
Q 014314 326 ERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------------------------ 357 (427)
Q Consensus 326 ~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~------------------------------------------------ 357 (427)
++..+...|+.| .|+|||++++||+|++..
T Consensus 498 Ea~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 575 (922)
T 1nkt_A 498 EATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVI 575 (922)
T ss_dssp HHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777777778777 699999999999999975
Q ss_pred ----CEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 358 ----NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 358 ----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
.+||+++.|.|...|.||.||+||.|.+|.++.|++..++
T Consensus 576 ~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 576 EAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999986554
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.1e-42 Score=337.08 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=231.6
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceE
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (427)
..|+++|.++++.++.++++++++|||+|||++++.++...+.... .++||++|+++|+.||.++++++... ++..+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF-SHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSS-CGGGE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcC-Cccce
Confidence 3899999999999999999999999999999999988887664322 28999999999999999999888544 36788
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEE
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (427)
..++|+.....+ ..+..+|+|+||+.+.. .....+.++++||+||+|++.. ..+..++..+.+..+++
T Consensus 189 ~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 189 KKIGGGASKDDK----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EECGGGCCTTGG----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCTTCCEEE
T ss_pred EEEecCCccccc----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcccCcEEE
Confidence 888887665443 23346999999997654 2334567899999999998864 45667777887788999
Q ss_pred EEEccCCccHHHHHHH-hcCCCeEEEEcCC-----ccccccceEEEEEEech---------------------hhHHHHH
Q 014314 227 MFSATLSKEIRPVCKK-FMQDPMEIYVDDE-----AKLTLHGLVQHYIKLSE---------------------LEKNRKL 279 (427)
Q Consensus 227 ~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------------~~~~~~l 279 (427)
++|||++......... .+..+........ ................. ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 9999997664221111 1111211111110 00011111111111111 1223334
Q ss_pred HHHHHhc---CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEe-CCccccCCCC
Q 014314 280 NDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIE 355 (427)
Q Consensus 280 ~~~l~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gld~~ 355 (427)
..++... .+.++|||++ .+.+..+++.|.+.+.++..+||+++..+|..+++.|++|+.+||||| +++++|+|+|
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCC
T ss_pred HHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccc
Confidence 4555443 3445566666 899999999999998899999999999999999999999999999999 9999999999
Q ss_pred CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEec
Q 014314 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (427)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 393 (427)
++++||++++|+|...|.|++||+||.|+.+.++++++
T Consensus 416 ~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 416 NLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999998774444443
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.9e-43 Score=346.40 Aligned_cols=326 Identities=16% Similarity=0.123 Sum_probs=235.1
Q ss_pred CCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
+++++.+.+++... ...++|+|+.+++.++.++++++++|||||||++|++|+++.+... +.++||++||++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 44555555544443 4678899988999999999999999999999999999999876542 24899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHH
Q 014314 131 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (427)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~ 210 (427)
.+.++ +..+. +.+.. .. ........+.++|.+.+...+... ..+.++++||+||||++ + .++..
T Consensus 232 ~~~l~-------~~~v~-~~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~-~~~~~ 295 (618)
T 2whx_A 232 EEALR-------GLPIR-YQTPA-VK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D-PCSVA 295 (618)
T ss_dssp HHHTT-------TSCEE-ECCTT-SS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S-HHHHH
T ss_pred HHHhc-------CCcee-Eeccc-ce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C-ccHHH
Confidence 87775 23333 22211 00 011122367788988887755544 45789999999999998 2 46666
Q ss_pred HHHHHHHhCC-CCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCC
Q 014314 211 DVQEIFKMTP-HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFN 289 (427)
Q Consensus 211 ~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 289 (427)
.+..+...++ ...|++++|||++.....+.. .++..+.+.... +.. +...+...+.. ..+
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~~-~~~~ll~~l~~-~~~ 356 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PER-SWNTGFDWITD-YQG 356 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CSS-CCSSSCHHHHH-CCS
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CHH-HHHHHHHHHHh-CCC
Confidence 6666666554 578999999999876443222 122222222111 000 00111122222 357
Q ss_pred eEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEE---------
Q 014314 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV--------- 360 (427)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~v--------- 360 (427)
++||||++++.++.+++.|+..++++..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P 431 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKP 431 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecc
Confidence 99999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred -----------EEcCCCCCchhhhhcccccCCCCC-ccEEEEEec--CCccHHHHHHHHHHhccccccCCccc
Q 014314 361 -----------INYDMPDSADTYLHRVGRAGRFGT-KGLAITFVS--SASDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 361 -----------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
|+++.|.|..+|+||+||+||.|. .|.+++|+. ..++...+..+++.+..+...+++..
T Consensus 432 ~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~ 504 (618)
T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 504 (618)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence 667779999999999999999964 899999986 34566677888887666555555443
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.1e-42 Score=327.67 Aligned_cols=287 Identities=15% Similarity=0.123 Sum_probs=211.2
Q ss_pred CCCCCchHHHHhHhhhhcCCeE-EEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 65 GFEHPSEVQHECIPQAILGMDV-ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~-li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
|+.+++|+|+ +++.++.++++ ++++|||||||++|++|++......+ .+++|++||++|+.|+.+.+. +
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~--~~~lvl~Ptr~La~Q~~~~l~-------g 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR--LRTLILAPTRVVAAEMEEALR-------G 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------T
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC--CcEEEECCCHHHHHHHHHHhc-------C
Confidence 6788999985 79999998886 99999999999999999987654322 389999999999999988774 3
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHH-HhCCCC
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-KMTPHD 222 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~-~~~~~~ 222 (427)
..+......... .......|.++|++.+...+... ..+.++++||+||||.+. ..+...+..+. ....+.
T Consensus 71 ~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~--~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 71 LPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTD--PCSVAARGYISTRVEMGE 141 (451)
T ss_dssp SCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCS--HHHHHHHHHHHHHHHTTS
T ss_pred ceeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCC--cchHHHHHHHHHhhcCCC
Confidence 333322221110 11122479999999998866544 457899999999999772 23222222222 223457
Q ss_pred ceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHH
Q 014314 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 302 (427)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~ 302 (427)
.|+++||||++...... +...+..+....... ... + ..+...+.. ..+++||||++++.++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p--~~~----~---------~~~~~~l~~-~~~~~lVF~~s~~~a~ 202 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP--ERS----W---------NTGFDWITD-YQGKTVWFVPSIKAGN 202 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC--SSC----C---------SSSCHHHHH-CCSCEEEECSSHHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccCC--chh----h---------HHHHHHHHh-CCCCEEEEcCCHHHHH
Confidence 89999999998754322 222333232221110 000 0 001122233 3579999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcC------------------
Q 014314 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD------------------ 364 (427)
Q Consensus 303 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~------------------ 364 (427)
.+++.|++.|+.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 203 ~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~ 277 (451)
T 2jlq_A 203 DIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILA 277 (451)
T ss_dssp HHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeec
Confidence 999999999999999999754 56899999999999999999999999999 9999998
Q ss_pred --CCCCchhhhhcccccCCCCC-ccEEEEEecC
Q 014314 365 --MPDSADTYLHRVGRAGRFGT-KGLAITFVSS 394 (427)
Q Consensus 365 --~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 394 (427)
.|.|..+|+||+||+||.|+ .|.+++|+..
T Consensus 278 ~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 278 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888743
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.8e-42 Score=331.95 Aligned_cols=294 Identities=20% Similarity=0.256 Sum_probs=221.0
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce-E
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-V 146 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~-~ 146 (427)
.|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.||.++++++ +++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-----CCcce
Confidence 6999999999999999999999999999999999888765 128999999999999999999884 567 8
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEE
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (427)
..++|+... ..+|+|+||+.+....... ..++++||+||+|.+.+ ..+.. +...+ ...+++
T Consensus 162 ~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~-~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 162 GEFSGRIKE----------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPA-ESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEBSSSCBC----------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTS-TTTHH----HHHTC-CCSEEE
T ss_pred EEECCCcCC----------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCC-hHHHH----HHHhc-CCCeEE
Confidence 888887643 2589999999998755421 24588999999999987 45543 44444 457899
Q ss_pred EEEccCCcc-------------------HHHHHHHhcCCCeE--EEEcCCccc--c---------------------ccc
Q 014314 227 MFSATLSKE-------------------IRPVCKKFMQDPME--IYVDDEAKL--T---------------------LHG 262 (427)
Q Consensus 227 ~~SAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~~--~---------------------~~~ 262 (427)
++|||+... ...+...++.++.. +.+...... . ...
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 999999732 22221222222111 111100000 0 000
Q ss_pred eEEE---------------------EEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCC
Q 014314 263 LVQH---------------------YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321 (427)
Q Consensus 263 ~~~~---------------------~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~ 321 (427)
.... ........|...+..++....++++||||++.+.++.+++.|. +..+||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~ 377 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHR 377 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCC
Confidence 0000 0001223456778888888788999999999999999998874 5578999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCc-cE--EEEEecCCc
Q 014314 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK-GL--AITFVSSAS 396 (427)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~-g~--~~~~~~~~~ 396 (427)
++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|.||+||+||.|+. +. ++.++....
T Consensus 378 ~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 378 TSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999854 33 444555443
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.6e-43 Score=334.27 Aligned_cols=302 Identities=17% Similarity=0.172 Sum_probs=202.9
Q ss_pred hhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH
Q 014314 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 158 (427)
Q Consensus 79 ~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 158 (427)
+++.|+++++++|||||||++|++|+++.+...+ .+++|++||++|+.|+++.++.+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~--~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~~--- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR--LRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFSA--- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCCC---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC--CeEEEEcchHHHHHHHHHHHhcC-------CeEEeccccee---
Confidence 4677999999999999999999999998664432 48999999999999999877633 33322221100
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEEEccCCccHH
Q 014314 159 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 237 (427)
Q Consensus 159 ~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~ 237 (427)
......-+-..+.+.+...+. ....+.++++||+||+|++. ..+...+..+.... ....|+++||||+++...
T Consensus 72 ---v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~~--~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 72 ---HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLD--PASIAARGWAAHRARANESATILMTATPPGTSD 145 (440)
T ss_dssp ---CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCS--HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred ---ccCCccceeeecccchhHhhh-CcccccCccEEEEECccccC--cchHHHHHHHHHHhccCCceEEEEeCCCCchhh
Confidence 000001122233333333222 23457899999999999982 23333333332222 356899999999987643
Q ss_pred HHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEE
Q 014314 238 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317 (427)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~ 317 (427)
.+... ..+... .. ...........+..+. . .++++||||++++.++.+++.|+..++++..
T Consensus 146 ~~~~~--~~~~~~-~~--------------~~~~~~~~~~~~~~l~-~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~ 206 (440)
T 1yks_A 146 EFPHS--NGEIED-VQ--------------TDIPSEPWNTGHDWIL-A-DKRPTAWFLPSIRAANVMAASLRKAGKSVVV 206 (440)
T ss_dssp SSCCC--SSCEEE-EE--------------CCCCSSCCSSSCHHHH-H-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhc--CCCeeE-ee--------------eccChHHHHHHHHHHH-h-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 22211 011110 00 0011111111122222 2 2589999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE-------------------cCCCCCchhhhhcccc
Q 014314 318 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------------------YDMPDSADTYLHRVGR 378 (427)
Q Consensus 318 l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR 378 (427)
+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+||
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR 281 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 281 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccc
Confidence 999 3688899999999999999999999999999 999986 8889999999999999
Q ss_pred cCCC-CCccEEEEEe--cCCccHHHHHHHHHHhccccccCCcccCCC
Q 014314 379 AGRF-GTKGLAITFV--SSASDSDILNQVQARFEVDIKELPEQIDTS 422 (427)
Q Consensus 379 ~~R~-g~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 422 (427)
+||. |+.|.|++|+ ....+...+..+++.+.....+++......
T Consensus 282 ~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~ 328 (440)
T 1yks_A 282 IGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMVAP 328 (440)
T ss_dssp SSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGCCCC
T ss_pred cCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccccccc
Confidence 9997 6899999997 346677788888888877666666655443
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5e-41 Score=337.29 Aligned_cols=332 Identities=14% Similarity=0.172 Sum_probs=240.0
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhc-CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
...|.++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||||||++..+.++........+.++++++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 456999999999999999888 7899999999998887 56799999999999994222222222212113479999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcc-c
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-M 202 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~-~ 202 (427)
++|+.|+.+.+........+..+........ ......+|+++||+++.+.+... ..+.++++||+||+|. .
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~-------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN-------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERT 221 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEETTEE-------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCC
T ss_pred HHHHHHHHHHHHHHhCCchhheecceecccc-------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccc
Confidence 9999999887765542211222322111111 01123689999999999866553 4578999999999996 4
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhH----HHH
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK----NRK 278 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 278 (427)
++.......+..+.... +..|++++|||++. ..+.. ++.....+.+.... ..+...+........ ...
T Consensus 222 ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 222 LATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHH
Confidence 43111223344444443 56899999999964 33433 44433333333221 122233322222222 233
Q ss_pred HHHHHHhcCCCeEEEEECCchhHHHHHHHHHh-----------CCCCeEEecCCCCHHHHHHHHHhhh-----cCCCcEE
Q 014314 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-----------CNFPSICIHSGMSQEERLTRYKGFK-----EGNKRIL 342 (427)
Q Consensus 279 l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~-----------~~~~~~~l~~~~~~~~r~~~~~~f~-----~~~~~vl 342 (427)
+..++....++++||||++++.++.+++.|.+ .++.+..+||++++.+|..+++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 44444445679999999999999999999985 5788999999999999999999999 9999999
Q ss_pred EEeCCccccCCCCCCCEEEEcCC------------------CCCchhhhhcccccCCCCCccEEEEEecC
Q 014314 343 VATDLVGRGIDIERVNIVINYDM------------------PDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 343 v~T~~~~~Gld~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|||+++++|+|+|++++||+++. |.|..+|+||+|||||. .+|.|+.+++.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 99999999999999999999887 88999999999999999 89999999964
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.2e-41 Score=327.29 Aligned_cols=277 Identities=19% Similarity=0.202 Sum_probs=210.7
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.++++|+.+++.+..+++++++||||||||.++.+++++. +.+++|++||++||.|+++.+.+.. +..+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg 286 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH----GIDPN 286 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH----SCCCE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh----CCCee
Confidence 4567777777777778899999999999999999998873 2289999999999999998887665 44566
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCce--E
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ--V 225 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~--~ 225 (427)
...|+.. ..+..+|+|+||++|+ ....+.+.++++||+||||.+. .++...+..+.+.++...+ +
T Consensus 287 ~~vG~~~--------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~--~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 287 IRTGVRT--------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTD--STTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EECSSCE--------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCS--HHHHHHHHHHHHHTTTTTCSEE
T ss_pred EEECcEe--------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcC--ccHHHHHHHHHHhhhhcCCceE
Confidence 6667644 2333699999999984 4566778899999999998764 4777778888888887666 7
Q ss_pred EEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHH
Q 014314 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 305 (427)
Q Consensus 226 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~ 305 (427)
+++|||++..+. ...+....+..... .....+ ..... ++....+++||||++++.++.++
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~~----~~i~~~---~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSNT----GEIPFY---GKAIP-------IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBSC----SSEEET---TEEEC-------GGGSSSSEEEEECSCHHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeeccc----chhHHH---Hhhhh-------hhhccCCcEEEEeCCHHHHHHHH
Confidence 888999997421 11111111111000 000000 00000 12336789999999999999999
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEE----------EcC-----------
Q 014314 306 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----------NYD----------- 364 (427)
Q Consensus 306 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi----------~~~----------- 364 (427)
+.|++.++.+..+||++++.+ |.++..+|||||+++++|||+| +++|| +||
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999764 5556679999999999999997 99988 566
Q ss_pred CCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
.|.|.++|+||+||+|| |++|. +.|+.+.+.
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 89999999999999999 99999 888876543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2e-41 Score=334.00 Aligned_cols=318 Identities=18% Similarity=0.206 Sum_probs=222.4
Q ss_pred HHHhCCCC-----CCchHHH-----HhHhhhh------cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 60 AIVDSGFE-----HPSEVQH-----ECIPQAI------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 60 ~l~~~~~~-----~~~~~Q~-----~~i~~~~------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
++..+||. .|+++|+ ++++.++ .++++++++|||||||++|+++++..+...+ .+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~--~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR--LRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT--CCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEccH
Confidence 45556766 8999999 9999988 8999999999999999999999998754332 489999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+++.++.+ ++. ...+... .......-+-+.+.+.+...+... ..+.++++||+||+|++.
T Consensus 280 r~La~Q~~~~l~~~-----~i~--~~~~~l~------~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~ 345 (673)
T 2wv9_A 280 RVVAAEMAEALRGL-----PVR--YLTPAVQ------REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTD 345 (673)
T ss_dssp HHHHHHHHHHTTTS-----CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCC
T ss_pred HHHHHHHHHHHhcC-----Cee--eeccccc------ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccC
Confidence 99999999877643 221 1111000 011111234556666665544433 568899999999999882
Q ss_pred cCCCcHHHHHHHHHhC-CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHH
Q 014314 204 ESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (427)
..+...+..+.... +...|+++||||++..+..+... ..+.. .+.. ..........+..+
T Consensus 346 --~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~--------------~~~~~~~~~~l~~l 406 (673)
T 2wv9_A 346 --PASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS--------------EIPDRAWSSGFEWI 406 (673)
T ss_dssp --HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC--------------CCCSSCCSSCCHHH
T ss_pred --ccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EEee--------------ecCHHHHHHHHHHH
Confidence 22222333333332 25789999999998764322111 11111 1100 01111111112222
Q ss_pred HHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE
Q 014314 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (427)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~ 362 (427)
. . .++++||||++++.++.+++.|+..++++..+||. +|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 407 ~-~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 407 T-D-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp H-S-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred H-h-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEE
Confidence 2 2 46899999999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred --------------------cCCCCCchhhhhcccccCCC-CCccEEEEEec--CCccHHHHHHHHHHhccccccCCccc
Q 014314 363 --------------------YDMPDSADTYLHRVGRAGRF-GTKGLAITFVS--SASDSDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 363 --------------------~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
++.|.+.++|+||+||+||. |+.|.|++|+. ...+..+++.++..+..+..+++..+
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~g~ 559 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPNGL 559 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTTTB
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCchh
Confidence 56889999999999999998 78999999973 45666677777776644444444433
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.1e-40 Score=313.13 Aligned_cols=278 Identities=17% Similarity=0.165 Sum_probs=193.7
Q ss_pred hHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcch
Q 014314 76 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 155 (427)
Q Consensus 76 ~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 155 (427)
....+..++++++++|||||||++|++|++..+...+ .++||++|+++|+.|+.+.++ +..+....+....
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~--~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~ 84 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR--LRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQR 84 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT--CCEEEEECSHHHHHHHHHHTT-------TSCEEECC-----
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEECchHHHHHHHHHHhc-------CceEeEEeccccc
Confidence 3444566889999999999999999999998764322 389999999999999988775 2333322221110
Q ss_pred HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHH-HhCCCCceEEEEEccCCc
Q 014314 156 KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-KMTPHDKQVMMFSATLSK 234 (427)
Q Consensus 156 ~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~-~~~~~~~~~v~~SAT~~~ 234 (427)
. ......+.++|.+.+...+... ..+.++++||+||||.+.. .....+..+. ....+..|++++|||++.
T Consensus 85 -----~-~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~--~~~~~~~~~~~~~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 85 -----E-HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDP--ASIAARGYIATKVELGEAAAIFMTATPPG 155 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSH--HHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred -----C-CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCc--hhhHHHHHHHHHhccCCccEEEEEcCCCc
Confidence 0 1122357788988887755543 4678999999999997521 1111111111 112357899999999997
Q ss_pred cHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCC
Q 014314 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP 314 (427)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~ 314 (427)
.+..+... ..+........ .. .....+..++... .+++||||++++.++.+++.|+..++.
T Consensus 156 ~~~~~~~~--~~pi~~~~~~~---------------~~-~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~ 216 (459)
T 2z83_A 156 TTDPFPDS--NAPIHDLQDEI---------------PD-RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKK 216 (459)
T ss_dssp CCCSSCCC--SSCEEEEECCC---------------CS-SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred chhhhccC--CCCeEEecccC---------------Cc-chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCc
Confidence 64322111 12222111000 00 0000111223333 589999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEE--------------------cCCCCCchhhhh
Q 014314 315 SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN--------------------YDMPDSADTYLH 374 (427)
Q Consensus 315 ~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~--------------------~~~~~s~~~~~Q 374 (427)
+..+|+. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|+|
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~Q 291 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQ 291 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHH
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHH
Confidence 9999995 6778899999999999999999999999999 99999 679999999999
Q ss_pred cccccCCCCC-ccEEEEEecCC
Q 014314 375 RVGRAGRFGT-KGLAITFVSSA 395 (427)
Q Consensus 375 ~~GR~~R~g~-~g~~~~~~~~~ 395 (427)
|+||+||.|+ +|.+++|+...
T Consensus 292 R~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 292 RRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHTTSSCCTTCCCEEEEECSCC
T ss_pred hccccCCCCCCCCeEEEEEccc
Confidence 9999999997 99999999764
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-38 Score=300.96 Aligned_cols=269 Identities=13% Similarity=0.155 Sum_probs=189.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
|+++++++|||||||++|++++++.+...+ .+++|++||++|+.|+.+.++ ++.+....|+... .
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g--~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR--LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------E 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------c
Confidence 688999999999999999999885544322 389999999999999887664 4456555553221 1
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHh-CCCCceEEEEEccCCccHHHHHH
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKEIRPVCK 241 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~-~~~~~~~v~~SAT~~~~~~~~~~ 241 (427)
......+.++|.+.+...+.. ...+.++++||+||+|++. ..+......+... .+...|++++|||+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~--~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~ 143 (431)
T 2v6i_A 67 RTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD--PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP 143 (431)
T ss_dssp --CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS--HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC
T ss_pred CCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC--ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC
Confidence 111236778888888775554 4568899999999999873 2333333333332 24578999999999975322111
Q ss_pred HhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCC
Q 014314 242 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321 (427)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~ 321 (427)
. ..+.. .... .... .+...+...+... ++++||||++++.++.+++.|++.++++..+||+
T Consensus 144 ~--~~~i~-~~~~--------------~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~ 204 (431)
T 2v6i_A 144 S--NSPII-DEET--------------RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK 204 (431)
T ss_dssp C--SSCCE-EEEC--------------CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred C--CCcee-eccc--------------cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 0 11111 1100 0000 0111122233332 5789999999999999999999999999999997
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCE-----------------EEEcCCCCCchhhhhcccccCCCCC
Q 014314 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI-----------------VINYDMPDSADTYLHRVGRAGRFGT 384 (427)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (427)
+|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|.
T Consensus 205 ----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 205 ----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp ----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 577889999999999999999999999999 655 5778899999999999999999985
Q ss_pred -ccEEEEEec
Q 014314 385 -KGLAITFVS 393 (427)
Q Consensus 385 -~g~~~~~~~ 393 (427)
.|.+++|..
T Consensus 280 ~~~~~~~~~~ 289 (431)
T 2v6i_A 280 KLGDIYAYSG 289 (431)
T ss_dssp CCCCEEEECS
T ss_pred CCCeEEEEcC
Confidence 555555553
No 51
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-37 Score=269.58 Aligned_cols=216 Identities=80% Similarity=1.313 Sum_probs=188.6
Q ss_pred ccCCcccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCe
Q 014314 36 AKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV 115 (427)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~ 115 (427)
.+.++...+...|+++++++.+.++|.+.||..|+++|.++++.++.++++++++|||+|||++|+++++..+....+..
T Consensus 4 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~ 83 (220)
T 1t6n_A 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 83 (220)
T ss_dssp ----------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC
T ss_pred CCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE
Confidence 34566777778899999999999999999999999999999999999999999999999999999999999887666666
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iV 195 (427)
++||++|+++|+.|+.+.++++....+++++..++|+.....+...+..+.++|+|+||+++..++......+.+++++|
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998777788999999998888777777776679999999999999988888889999999
Q ss_pred EcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEE
Q 014314 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251 (427)
Q Consensus 196 vDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 251 (427)
+||||.+.++.++...+..++...+...|++++|||+++.+..+++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999998755788888999998888999999999999999999999999887653
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.2e-38 Score=315.49 Aligned_cols=299 Identities=18% Similarity=0.212 Sum_probs=185.0
Q ss_pred CCchHHHHhHhhhhc-----CCeEEEEecCCCCcchHHHHHhhhccCCC------CCCeEEEEEeCchHHHHHHH-HHHH
Q 014314 68 HPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQIC-HEFE 135 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~-~~~~ 135 (427)
.|+++|.++++.++. .++++++++||+|||++++..+...+... ....++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999886 46699999999999999665544433222 13458999999999999998 6666
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc----CCCCCCCccEEEEcCCcccccCCCcHHH
Q 014314 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLDMRRD 211 (427)
Q Consensus 136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~----~~~~~~~~~~iVvDEah~~~~~~~~~~~ 211 (427)
.+. ..+..+.++. .....+|+|+||++|...... ..+....+++||+||||++... ....
T Consensus 258 ~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~~ 321 (590)
T 3h1t_A 258 PFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNSN 321 (590)
T ss_dssp TTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chHH
Confidence 542 2333333321 122369999999999876542 2234567899999999998652 2244
Q ss_pred HHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEE------------------EcCCcccc----cc--------
Q 014314 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY------------------VDDEAKLT----LH-------- 261 (427)
Q Consensus 212 ~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~----~~-------- 261 (427)
+..++..++ ..+++++|||+..........++..+...+ +....... ..
T Consensus 322 ~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 556666665 367999999987543332233333222211 10000000 00
Q ss_pred ceEEEEEEech-------hhHHH----HHHHHHHh-cCCCeEEEEECCchhHHHHHHHHHhCCC--------CeEEecCC
Q 014314 262 GLVQHYIKLSE-------LEKNR----KLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNF--------PSICIHSG 321 (427)
Q Consensus 262 ~~~~~~~~~~~-------~~~~~----~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~--------~~~~l~~~ 321 (427)
.+......... ..+.. .+..++.. .+.+++||||++++.|+.+++.|.+.+. .+..+||.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 00000000000 01111 23333333 2458999999999999999999987543 26778998
Q ss_pred CCHHHHHHHHHhhhcCCCc---EEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCC
Q 014314 322 MSQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384 (427)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (427)
++. +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|...|+||+||+||.+.
T Consensus 481 ~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 481 EGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp THH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred ChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 764 799999999998766 88899999999999999999999999999999999999999874
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5.4e-38 Score=323.57 Aligned_cols=320 Identities=18% Similarity=0.171 Sum_probs=223.2
Q ss_pred CCCchHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 67 EHPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
..|+|+|.+++..++. +..++++++||+|||++++..+......+... ++|||||+ .|+.||..++.+.+ ++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~-rvLIVvP~-sLl~Qw~~E~~~~f----~l 225 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAE-RVLIIVPE-TLQHQWLVEMLRRF----NL 225 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCC-CEEEECCT-TTHHHHHHHHHHHS----CC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEeCH-HHHHHHHHHHHHHh----CC
Confidence 3799999999999887 44799999999999999877776655443332 79999999 99999999997665 55
Q ss_pred eEEEEEcCcchHHHHHH-HhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCcccccCCCcH-HHHHHHHHhCCC
Q 014314 145 KVAVFYGGVNIKIHKDL-LKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPH 221 (427)
Q Consensus 145 ~~~~~~g~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah~~~~~~~~~-~~~~~~~~~~~~ 221 (427)
++.++.++......... ..-...+|+|+|++.+...... ..+....+++||+||||++.+..... .....+......
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 66666554322111110 0012358999999988642111 11234578899999999997633221 112222222234
Q ss_pred CceEEEEEccCCcc----HHHHHHHhcCCC--------------------------------------------------
Q 014314 222 DKQVMMFSATLSKE----IRPVCKKFMQDP-------------------------------------------------- 247 (427)
Q Consensus 222 ~~~~v~~SAT~~~~----~~~~~~~~~~~~-------------------------------------------------- 247 (427)
..+++++||||..+ +..++..+....
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 55789999998431 111111000000
Q ss_pred ------------------------------eEEEEcC-C-ccccccceEEEEE---------------------------
Q 014314 248 ------------------------------MEIYVDD-E-AKLTLHGLVQHYI--------------------------- 268 (427)
Q Consensus 248 ------------------------------~~~~~~~-~-~~~~~~~~~~~~~--------------------------- 268 (427)
..+.... . ...+.........
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 0000000 0 0000000000000
Q ss_pred ------------------EechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHH
Q 014314 269 ------------------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLT 329 (427)
Q Consensus 269 ------------------~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~ 329 (427)
......|...+..++...+++++||||+++..++.+++.|.. .|+++..+||+|++.+|..
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 112334677888888887889999999999999999999995 5999999999999999999
Q ss_pred HHHhhhcCC--CcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEe
Q 014314 330 RYKGFKEGN--KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392 (427)
Q Consensus 330 ~~~~f~~~~--~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 392 (427)
+++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.++++.
T Consensus 546 ~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999998 999999999999999999999999999999999999999999999988665553
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.1e-36 Score=266.81 Aligned_cols=212 Identities=25% Similarity=0.438 Sum_probs=190.7
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-----CCCe
Q 014314 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQV 115 (427)
Q Consensus 41 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~ 115 (427)
.+.....|.++++++.+.+.+.+.||..|+++|.++++.++.|+++++++|||||||++|++|++..+... ..++
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 34456779999999999999999999999999999999999999999999999999999999999875432 2345
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iV 195 (427)
++||++|+++|+.|+.+.++.+.... ++++..++|+.....+...+.++ ++|+|+||+++..++......+.+++++|
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 89999999999999999999998776 78999999999888777777776 69999999999999988888899999999
Q ss_pred EcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCC
Q 014314 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 255 (427)
Q Consensus 196 vDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 255 (427)
+||||.+.+ .+|...+..++..+++..|++++|||+++.+..++..++.+|..+.+...
T Consensus 182 iDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 182 LDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ETTHHHHHH-TTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EeCHHHHhh-hCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999988 68999999999999999999999999999999999999999988877643
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-36 Score=258.01 Aligned_cols=203 Identities=32% Similarity=0.565 Sum_probs=184.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
..|+++++++.+++.|.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+......++++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876666668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC
Q 014314 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~ 205 (427)
|+.|+.+.++++....++.++..++|+.........+..+ ++|+|+||+++...+.+....+.+++++|+||||.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~- 160 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS- 160 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC-CSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS-
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC-CCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh-
Confidence 9999999999998776678999999998877766666554 69999999999999888878889999999999999987
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEE
Q 014314 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250 (427)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 250 (427)
.++...+..+...+++..|++++|||++..+..++..++.+|..+
T Consensus 161 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 161 QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 689999999999998899999999999999999999999888654
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.9e-36 Score=294.24 Aligned_cols=309 Identities=17% Similarity=0.223 Sum_probs=212.5
Q ss_pred CCchHHHHhHhhhh----cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.|+|+|.+++.++. .+++++++++||+|||++++..+........ ..++||||| .+|+.||.++++++. ++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P-~~l~~qw~~e~~~~~---~~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICP-LSVLKNWEEELSKFA---PH 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEEC-STTHHHHHHHHHHHC---TT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEcc-HHHHHHHHHHHHHHC---CC
Confidence 68999999998874 4778999999999999987654444332222 237999999 569999999999886 46
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCc
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~ 223 (427)
.++.+++|+... .....++|+|+||+.+..... +....+++||+||||.+.+. . ....+.+..+. ..
T Consensus 112 ~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~-~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 112 LRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP-Q--TKIFKAVKELK-SK 178 (500)
T ss_dssp SCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT-T--SHHHHHHHTSC-EE
T ss_pred ceEEEEecCchh------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH-h--HHHHHHHHhhc-cC
Confidence 677777776522 111226899999999876433 23356889999999999762 2 12233344443 46
Q ss_pred eEEEEEccCCcc-HHHH---H---------------------------------HHhcCCCeEEEEcCCc---cccccce
Q 014314 224 QVMMFSATLSKE-IRPV---C---------------------------------KKFMQDPMEIYVDDEA---KLTLHGL 263 (427)
Q Consensus 224 ~~v~~SAT~~~~-~~~~---~---------------------------------~~~~~~~~~~~~~~~~---~~~~~~~ 263 (427)
+.+++||||..+ ..++ + ...+ .+..+...... ....+..
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCC
Confidence 789999998542 1111 1 1111 12221111100 0001111
Q ss_pred EEEEEEec---------------------------------------------------------hhhHHHHHHHHHHhc
Q 014314 264 VQHYIKLS---------------------------------------------------------ELEKNRKLNDLLDAL 286 (427)
Q Consensus 264 ~~~~~~~~---------------------------------------------------------~~~~~~~l~~~l~~~ 286 (427)
....+.+. ...|...+.+++...
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 11111111 112333444555543
Q ss_pred --CCCeEEEEECCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcC-CCc-EEEEeCCccccCCCCCCCEEE
Q 014314 287 --DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVATDLVGRGIDIERVNIVI 361 (427)
Q Consensus 287 --~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~-vlv~T~~~~~Gld~~~~~~vi 361 (427)
.+.++||||++...+..+++.|... |+.+..+||+++..+|..+++.|+++ ... +|++|+++++|+|+|++++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 5689999999999999999999885 99999999999999999999999988 454 788999999999999999999
Q ss_pred EcCCCCCchhhhhcccccCCCCCccEE--EEEecCC
Q 014314 362 NYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSA 395 (427)
Q Consensus 362 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~ 395 (427)
++++|+|+..|.|++||++|.|+.+.+ +.++...
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999987665 4445443
No 57
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=273.35 Aligned_cols=205 Identities=33% Similarity=0.546 Sum_probs=183.8
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcC--CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
..+|.++++++.++++|..+||..|+++|.++++.++.+ +++++++|||||||++|++|++..+......+++||++|
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 457999999999999999999999999999999999997 899999999999999999999999887777779999999
Q ss_pred chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCcc
Q 014314 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 201 (427)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah~ 201 (427)
|++||.|+++.++.+....+++.+....|+....... ...++|+|+||++++.++.+ ..+.+.++++||+||||.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 9999999999999998877788899888887644322 23369999999999998865 556788999999999999
Q ss_pred cccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEc
Q 014314 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (427)
+++..++...+..+...++..+|++++|||++..+..++..++.+|..+.+.
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9875689999999999999999999999999999999999999999887764
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.1e-36 Score=261.98 Aligned_cols=209 Identities=34% Similarity=0.500 Sum_probs=183.2
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEE
Q 014314 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 120 (427)
Q Consensus 41 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 120 (427)
.......|+++++++.+.+.|.+.||..|+++|.++++.++.++++++++|||+|||++|++|++..+.......++||+
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil 98 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILIL 98 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 33445679999999999999999999999999999999999999999999999999999999999987665555699999
Q ss_pred eCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCc
Q 014314 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (427)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah 200 (427)
+|+++|+.|+.+.++++....+++++..++|+.....+...+.. ++|+|+||+++..++......+.+++++|+||||
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK--CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTS--CSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccC--CCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 99999999999999999876668899999999887766655542 6999999999999988877788899999999999
Q ss_pred ccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEE
Q 014314 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 251 (427)
.+.++..|...+..++..++...|++++|||++..+..++..++.+|..+.
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 998743499999999999998999999999999999999999998887654
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3e-36 Score=296.13 Aligned_cols=291 Identities=16% Similarity=0.173 Sum_probs=209.9
Q ss_pred HHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 014314 73 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 152 (427)
Q Consensus 73 Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~ 152 (427)
|.......+.+++++++||||||||+.++..+... + ..+|++|+++||.|+++.++.. ++++..++|+
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~----~---~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~ 212 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSA----K---SGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGE 212 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHS----S---SEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSS
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc----C---CeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECC
Confidence 33334455678999999999999998544433332 1 4599999999999999998775 6788899998
Q ss_pred cchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCC-CCceEEEEEcc
Q 014314 153 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSAT 231 (427)
Q Consensus 153 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT 231 (427)
...... ......+++++|++.+. ....+++||+||+|++.+ .++...+..++..++ ...+++++|||
T Consensus 213 ~~~iv~---TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d-~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 213 ERVTVQ---PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRD-PARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp CEECCS---TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGC-TTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred eeEEec---CCCcccceeEecHhHhh--------hcccCCEEEEecceecCC-ccchHHHHHHHHccCccceEEEeccch
Confidence 654110 00112578999986542 346789999999999977 688888888887777 67899999999
Q ss_pred CCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhC
Q 014314 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 311 (427)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~ 311 (427)
.+ .+..+.... .....+...... .. ........ ..+.... .+.+|||++++.++.+++.|.+.
T Consensus 281 ~~-~i~~l~~~~-~~~~~v~~~~r~----~~---l~~~~~~l-------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 281 ID-LVMELMYTT-GEEVEVRDYKRL----TP---ISVLDHAL-------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp HH-HHHHHHHHH-TCCEEEEECCCS----SC---EEECSSCC-------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHhc-CCceEEEEeeec----ch---HHHHHHHH-------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhc
Confidence 53 233333322 333333221100 00 00000000 0111222 44588899999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHHHHhhhc--CCCcEEEEeCCccccCCCCCCCEEEEcCC--------------CCCchhhhhc
Q 014314 312 NFPSICIHSGMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDM--------------PDSADTYLHR 375 (427)
Q Consensus 312 ~~~~~~l~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gld~~~~~~vi~~~~--------------~~s~~~~~Q~ 375 (427)
++.+..+||+|++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.|..+|+||
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR 422 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQI 422 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHH
Confidence 9999999999999999999999998 889999999999999999 8999999998 7799999999
Q ss_pred ccccCCCCCc---cEEEEEecCCccHHHHHHHHHH
Q 014314 376 VGRAGRFGTK---GLAITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 376 ~GR~~R~g~~---g~~~~~~~~~~~~~~~~~~~~~ 407 (427)
+|||||.|.. |.|+.++. .+...++.+...
T Consensus 423 ~GRAGR~g~~g~~G~v~~l~~--~d~~~~~~~~~~ 455 (677)
T 3rc3_A 423 AGRAGRFSSRFKEGEVTTMNH--EDLSLLKEILKR 455 (677)
T ss_dssp HTTBTCTTSSCSSEEEEESST--THHHHHHHHHHS
T ss_pred hcCCCCCCCCCCCEEEEEEec--chHHHHHHHHhc
Confidence 9999999965 66655543 343344444443
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.3e-36 Score=263.85 Aligned_cols=207 Identities=42% Similarity=0.621 Sum_probs=176.4
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
...+|+++++++.++++|.+.||..|+++|.++++.++.++++++++|||+|||++|++|++..+.......++||++|+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 34679999999999999999999999999999999999999999999999999999999999988765555689999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++++.... ++.+..+.|+.....+...+..+.++|+|+||+++...+......+.++++||+||||.+.
T Consensus 108 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 186 (237)
T 3bor_A 108 RELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 186 (237)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhh
Confidence 999999999999987665 6788888888877766666666657999999999999988887888999999999999998
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEE
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 252 (427)
+ .++...+..+++.++...|++++|||+++.+..++..++.+|..+.+
T Consensus 187 ~-~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 187 S-RGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp H-TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred c-cCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 7 68889999999999989999999999999999999999998887654
No 61
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=263.90 Aligned_cols=205 Identities=32% Similarity=0.613 Sum_probs=184.0
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
..+|+++++++.+.++|.++|+..|+++|.++++.++.++++++++|||+|||++|++|++..+.....+.++||++|++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 45699999999999999999999999999999999999999999999999999999999998876555556899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCCcccc
Q 014314 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~iVvDEah~~~ 203 (427)
+|+.|+.+.++++.... ++++..++|+.....+...+..+ ++|+|+||+++...+.. ....+.++++||+||||++.
T Consensus 122 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 122 ELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTC-CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999998765 78899999998877666666555 69999999999998775 45678899999999999998
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEE
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 252 (427)
+ .++...+..++..++...|++++|||++..+..++..++.+|..+.+
T Consensus 200 ~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 200 N-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp H-TTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred c-cChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 8 58999999999999989999999999999999999999999987654
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=260.21 Aligned_cols=207 Identities=29% Similarity=0.540 Sum_probs=178.3
Q ss_pred ccccCCCCCC-CCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC------CC
Q 014314 41 VGIHSSGFRD-FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PG 113 (427)
Q Consensus 41 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~ 113 (427)
.+.....|.+ +++++.+++++.+.||..|+++|.++++.++.|+++++.+|||+|||++|++|++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3344567888 7999999999999999999999999999999999999999999999999999999876432 23
Q ss_pred CeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccE
Q 014314 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 193 (427)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 193 (427)
++++||++|+++|+.|+.++++++.. .++++..++|+.....+...+..+ ++|+|+||+++..++......+.++++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcCcccceE
Confidence 45899999999999999999999863 378899999988877777777666 699999999999999888888999999
Q ss_pred EEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEE
Q 014314 194 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251 (427)
Q Consensus 194 iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 251 (427)
||+||||.+.+ .++...+..++..+++..|++++|||+++.+..++..++.+|..+.
T Consensus 171 lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLD-MEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEECCHHHHHH-TTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEECHHHHhc-cchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999988 6899999999999999999999999999999999999999987764
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.2e-36 Score=258.70 Aligned_cols=206 Identities=33% Similarity=0.595 Sum_probs=182.5
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
.+|+++++++.+++++.+.|+..|+++|.++++.++.++++++++|||+|||++|++|++..+.....+.++||++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876665668999999999
Q ss_pred HHHHHHHHHHHHhccCC---CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccc
Q 014314 126 LAYQICHEFERFSTYLP---DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (427)
Q Consensus 126 L~~q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~ 202 (427)
|+.|+.+.++++....+ ++.+..+.|+.........+..+ ++|+|+||+++...+......+.+++++|+||||.+
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQ-PHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSC-CSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCC-CCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999886543 57888888887665544433333 699999999999998887778889999999999999
Q ss_pred ccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEc
Q 014314 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (427)
.+ .++...+..+...++...|++++|||++..+..+++.++.+|..+...
T Consensus 163 ~~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 163 LD-MGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HH-TTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hh-hChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 87 588999999999998899999999999999999999999999876543
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-35 Score=256.93 Aligned_cols=207 Identities=37% Similarity=0.590 Sum_probs=177.5
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
....|+++++++.+++.+.+.|+..|+++|.++++.++.++++++++|||+|||++|+++++..+.......++||++|+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 34579999999999999999999999999999999999999999999999999999999999988766666699999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++++.... ++++..++|+.....+...+.+ ++|+|+||+++...+......+.++++||+||||.+.
T Consensus 92 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 92 RELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHh
Confidence 999999999999987665 7888899998776655555444 6999999999999988888888999999999999998
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcC
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 254 (427)
+ .++...+..+...++...|++++|||+++.+..++..++.+|..+.+..
T Consensus 169 ~-~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 169 S-SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp H-TTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred h-hhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 7 6889999999999998999999999999999999999999998776543
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.6e-34 Score=273.72 Aligned_cols=318 Identities=19% Similarity=0.205 Sum_probs=232.7
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (427)
|+ +|+++|-.+.-.+..|+ +..+.||+|||+++.+|++.....+. .+.|++|+..||.|-++++..+...+ |+
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~L-gl 145 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFL-GL 145 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHh-CC
Confidence 55 68899999888887775 99999999999999999886555433 68999999999999999999998887 99
Q ss_pred eEEEEEcC--------------------------------------------------cchHHHHHHHhcCCCcEEEech
Q 014314 145 KVAVFYGG--------------------------------------------------VNIKIHKDLLKNECPQIVVGTP 174 (427)
Q Consensus 145 ~~~~~~g~--------------------------------------------------~~~~~~~~~~~~~~~~I~v~T~ 174 (427)
+++++... .+.......+. ++|.++|.
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~---~DItYgTn 222 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL---CDVTYGTN 222 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH---SSEEEEEH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc---CCCEEccC
Confidence 99998882 12222333333 59999999
Q ss_pred HHHH-HHHhcC------CCCCCCccEEEEcCCcccccC------------CCcHH---HHHHHHHh--------------
Q 014314 175 GRIL-ALARDK------DLSLKNVRHFILDECDKMLES------------LDMRR---DVQEIFKM-------------- 218 (427)
Q Consensus 175 ~~l~-~~~~~~------~~~~~~~~~iVvDEah~~~~~------------~~~~~---~~~~~~~~-------------- 218 (427)
.-|- ..++.+ ..-...+.+.||||+|.++-+ ..... .+..+...
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 8773 355432 223467899999999987610 00000 00000000
Q ss_pred ------------------------------------------CCC-----------------------------------
Q 014314 219 ------------------------------------------TPH----------------------------------- 221 (427)
Q Consensus 219 ------------------------------------------~~~----------------------------------- 221 (427)
+.+
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 000
Q ss_pred --------------------------CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCccccccceEEEEEEechhhH
Q 014314 222 --------------------------DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (427)
Q Consensus 222 --------------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (427)
-.++.+||+|+......+...+..+ .+.++ ..........+..+......|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IP-tnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIP-THKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECC-CSSCCCCEECCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEEC-CCCCcceeecCcEEEecHHHH
Confidence 0079999999998777666555433 33332 222111111222344567778
Q ss_pred HHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCC
Q 014314 276 NRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (427)
Q Consensus 276 ~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 353 (427)
...+...+... .+.++||||+|++.++.+++.|.+.|+++..+||+..+.++..+..+++.| .|+|||++++||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 88887777653 568999999999999999999999999999999985555555555555555 69999999999999
Q ss_pred CC--------CCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCcc
Q 014314 354 IE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (427)
Q Consensus 354 ~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 397 (427)
++ +..+||+++.|.|...|.||+||+||.|.+|.++.|++..++
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 98 567999999999999999999999999999999999986553
No 66
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=296.22 Aligned_cols=333 Identities=17% Similarity=0.202 Sum_probs=230.1
Q ss_pred CCchHHHHhHhhhh----cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.|+|+|.+++.+++ .+++++++.+||+|||++++..+...........++||||| .+|+.||.+++.+++ |+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CC
Confidence 68999999999877 58889999999999999876655443322222227899999 678999999999886 57
Q ss_pred ceEEEEEcCcchHHHHHHH-----------hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHH
Q 014314 144 IKVAVFYGGVNIKIHKDLL-----------KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV 212 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~-----------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~ 212 (427)
+++.+++|+.........+ ....++|+|+|++.+...... +....+++||+||||++.+... ..
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s---~~ 386 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAES---SL 386 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSS---HH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchh---HH
Confidence 7888888876544333322 123468999999999764321 1223678999999999965222 23
Q ss_pred HHHHHhCCCCceEEEEEccCCcc----HHHHHHHhcCC-----------------------------CeEEEEcCCc-cc
Q 014314 213 QEIFKMTPHDKQVMMFSATLSKE----IRPVCKKFMQD-----------------------------PMEIYVDDEA-KL 258 (427)
Q Consensus 213 ~~~~~~~~~~~~~v~~SAT~~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~ 258 (427)
...+..+ .....+++||||-.+ +..++..+... +..+...... ..
T Consensus 387 ~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~ 465 (800)
T 3mwy_W 387 YESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEK 465 (800)
T ss_dssp HHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTT
T ss_pred HHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhh
Confidence 3333444 345678999998321 22222211111 1111100000 00
Q ss_pred cccceEEEEEEe--------------------------------------------------------------------
Q 014314 259 TLHGLVQHYIKL-------------------------------------------------------------------- 270 (427)
Q Consensus 259 ~~~~~~~~~~~~-------------------------------------------------------------------- 270 (427)
..+......+.+
T Consensus 466 ~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~ 545 (800)
T 3mwy_W 466 SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRE 545 (800)
T ss_dssp TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSH
T ss_pred ccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHH
Confidence 000000111100
Q ss_pred -------chhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCC--
Q 014314 271 -------SELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK-- 339 (427)
Q Consensus 271 -------~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~-- 339 (427)
....|...+..++... .++++||||+....+..+.+.|...|+.+..+||+++..+|..+++.|+++..
T Consensus 546 ~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~ 625 (800)
T 3mwy_W 546 NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND 625 (800)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSC
T ss_pred HHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCc
Confidence 0123455566666654 45799999999999999999999999999999999999999999999998654
Q ss_pred -cEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEE--EEEecCC-ccHHHHHHHHHHhcc
Q 014314 340 -RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSA-SDSDILNQVQARFEV 410 (427)
Q Consensus 340 -~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~-~~~~~~~~~~~~~~~ 410 (427)
.+|++|.+++.|+|++.+++||++++|+|+..+.|++||++|.|+...+ +.|+... -+..++...+++...
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999976554 4455443 355555555555544
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-34 Score=248.48 Aligned_cols=201 Identities=37% Similarity=0.614 Sum_probs=179.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC---CCCeEEEEEeCc
Q 014314 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHT 123 (427)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~ 123 (427)
+|+++++++.+.+.+.+.|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999887542 234589999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
++|+.|+.+.++.+.. .+++..++|+.....+...+..+ ++|+|+||+++...+......+.+++++|+||||.+.
T Consensus 82 ~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRG-ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHC-CSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCC-CCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999998864 46888899988777666666655 6999999999999988887888999999999999998
Q ss_pred cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEE
Q 014314 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 252 (427)
+ .++...+..++...+...|++++|||+++.+..++..++.+|..+.+
T Consensus 158 ~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 S-MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp H-TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred c-cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 7 58899999999999889999999999999999999999999877653
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-33 Score=276.17 Aligned_cols=334 Identities=15% Similarity=0.130 Sum_probs=222.6
Q ss_pred CCchHHHHhHhhhh---------cCCeEEEEecCCCCcchHHHHHhhhccCCCC----CCeEEEEEeCchHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAI---------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~---------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~ 134 (427)
.|+|+|.+++.++. .++.++++.+||+|||++++..+...+...+ ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999885 3566999999999999987766655433221 22368999996 8999999999
Q ss_pred HHHhccCCCceEEEEEcCcchHHH--HHHHhc-----CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCC
Q 014314 135 ERFSTYLPDIKVAVFYGGVNIKIH--KDLLKN-----ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207 (427)
Q Consensus 135 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~-----~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~ 207 (427)
.++... .+.+..+.++...... ...+.. ...+|+|+|++.+..... .+....+++||+||||.+.+. .
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~-~ 208 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS-D 208 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT-C
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCCh-h
Confidence 999754 3566666665433221 111111 135899999999876432 233457889999999999762 2
Q ss_pred cHHHHHHHHHhCCCCceEEEEEccCCccH----HH---------------HHHHhc------------------------
Q 014314 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEI----RP---------------VCKKFM------------------------ 244 (427)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~~~----~~---------------~~~~~~------------------------ 244 (427)
......+.. + .....+++||||-.+- .. +...+.
T Consensus 209 -~~~~~al~~-l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 -NQTYLALNS-M-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp -HHHHHHHHH-H-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred -hHHHHHHHh-c-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 222233322 3 2456799999984321 00 000000
Q ss_pred -----CCCeEEEEcC-CccccccceEEEEEEe------------------------------------------------
Q 014314 245 -----QDPMEIYVDD-EAKLTLHGLVQHYIKL------------------------------------------------ 270 (427)
Q Consensus 245 -----~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------------------------------ 270 (427)
..+..+.... ......+......+.+
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0000000000 0000000000000000
Q ss_pred ------------------------------chhhHHHHHHHHHHh---cCCCeEEEEECCchhHHHHHHHHHhCCCCeEE
Q 014314 271 ------------------------------SELEKNRKLNDLLDA---LDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317 (427)
Q Consensus 271 ------------------------------~~~~~~~~l~~~l~~---~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~ 317 (427)
....|...+..++.. ..++++||||++...++.+.+.|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 012233444444443 25789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCCc---EEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccE--EEEEe
Q 014314 318 IHSGMSQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL--AITFV 392 (427)
Q Consensus 318 l~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~ 392 (427)
+||+++..+|..+++.|+++... +|++|.++++|+|++++++||++|+|+++..+.|++||++|.|+... ++.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998764 88999999999999999999999999999999999999999998765 44455
Q ss_pred cCCc-cHHHHHHHHHHhcc
Q 014314 393 SSAS-DSDILNQVQARFEV 410 (427)
Q Consensus 393 ~~~~-~~~~~~~~~~~~~~ 410 (427)
.... +..++.....+...
T Consensus 526 ~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHT
T ss_pred ECCCHHHHHHHHHHHHHHH
Confidence 5443 44444444444433
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=257.49 Aligned_cols=201 Identities=27% Similarity=0.478 Sum_probs=173.9
Q ss_pred CCCCCCCC--CCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC----CCCeEEE
Q 014314 45 SSGFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTAL 118 (427)
Q Consensus 45 ~~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~l 118 (427)
...|.+++ +++.++++|.++||..|+++|.++++.++.++++++++|||||||++|++|++..+... ..+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 44577776 99999999999999999999999999999999999999999999999999999865431 1234899
Q ss_pred EEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEc
Q 014314 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILD 197 (427)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvD 197 (427)
|++|+++|+.|+.+.++++.... +..+..++|+.........+..+ ++|+|+||+++...+... ...+.++++||+|
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999988765 78889999998887777777666 699999999999877654 4678899999999
Q ss_pred CCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCe
Q 014314 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 248 (427)
Q Consensus 198 Eah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~ 248 (427)
|||++.+ .+|...+..+...++..+|++++|||+++.+..+++.++..+.
T Consensus 209 Eah~l~~-~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILD-VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHH-TTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhh-hhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999988 6899999999999999999999999999999999988876543
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1e-34 Score=256.44 Aligned_cols=209 Identities=28% Similarity=0.510 Sum_probs=181.8
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC---------CCCe
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQV 115 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---------~~~~ 115 (427)
..+|.++++++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 4569999999999999999999999999999999999999999999999999999999999876432 1235
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iV 195 (427)
++||++|+++|+.|+.+.++.+.... ++.+..++|+.....+...+..+ ++|+|+||+++..++......+.++++||
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMG-CHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSC-CSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCC-CCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 89999999999999999999988765 68888999998877777666655 69999999999999988888889999999
Q ss_pred EcCCcccccCCCcHHHHHHHHHh--CCC--CceEEEEEccCCccHHHHHHHhcCCCeEEEEcCCc
Q 014314 196 LDECDKMLESLDMRRDVQEIFKM--TPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256 (427)
Q Consensus 196 vDEah~~~~~~~~~~~~~~~~~~--~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (427)
+||||.+.+ .+|...+..++.. .+. ..|++++|||+++.+..++..++.+|..+.+....
T Consensus 180 iDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 180 LDEADRMLD-MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp EETHHHHHH-TTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred EeCHHHHHh-CchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 999999988 5899999999884 333 67999999999999999999999999888766543
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=250.63 Aligned_cols=205 Identities=26% Similarity=0.499 Sum_probs=177.7
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC----CCCCeEEEEE
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVL 120 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~----~~~~~~~lil 120 (427)
...|.++++++.+.+.|.+.|+..|+++|.++++.++.++++++++|||+|||++|++|++..+.. ...+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 456999999999999999999999999999999999999999999999999999999999886532 1223489999
Q ss_pred eCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCC
Q 014314 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDEC 199 (427)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~iVvDEa 199 (427)
+|+++|+.|+.+.++.+.... ++++..++|+.....+...+. .++|+|+||+++...+... ...+.++++||+|||
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred eCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 999999999999999987664 688999999887766655553 3699999999999877654 466789999999999
Q ss_pred cccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhcCCCeEEEEc
Q 014314 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (427)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (427)
|.+.+ .++...+..++..++...|++++|||+++.+..+++.++.+|..+.+.
T Consensus 181 h~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 181 DRILD-MGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHH-TTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHhc-CCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99987 688999999999999999999999999999999999999999877654
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=252.50 Aligned_cols=211 Identities=26% Similarity=0.442 Sum_probs=175.0
Q ss_pred cCCCCCCC----CCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEE
Q 014314 44 HSSGFRDF----LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTAL 118 (427)
Q Consensus 44 ~~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~l 118 (427)
....|+++ ++++.+++++.++||..|+++|.++++.++.++++++.+|||+|||++|++|++..+... ..++++|
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~l 102 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRAL 102 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEE
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEE
Confidence 34567665 899999999999999999999999999999999999999999999999999999887642 3445899
Q ss_pred EEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCccEEEE
Q 014314 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFIL 196 (427)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~--~~~~~~~~~iVv 196 (427)
|++|+++|+.|+.+.++++.... ++.+..++|+..............++|+|+||+++..++... ...+.++++||+
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 103 IISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99999999999999999987765 677777766544333322223345799999999999988776 467889999999
Q ss_pred cCCcccccC--CCcHHHHHHHHHhC-CCCceEEEEEccCCccHHHHHHHhcCCCeEEEEcCC
Q 014314 197 DECDKMLES--LDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 255 (427)
Q Consensus 197 DEah~~~~~--~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 255 (427)
||||.+.++ .++...+..++... +...|++++|||++..+..++..++.+|..+.+...
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999764 47888888887665 457899999999999999999999999998877654
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.3e-33 Score=288.57 Aligned_cols=321 Identities=14% Similarity=0.131 Sum_probs=213.7
Q ss_pred CCchHHHHhHhhhhc--------------CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAIL--------------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 133 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~--------------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 133 (427)
.|+|+|..|++.++. +++++++++||||||+++ ++++..+...+...++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999999876 367999999999999997 55555554433345999999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCCCCccEEEEcCCcccccCCCcHHH
Q 014314 134 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRD 211 (427)
Q Consensus 134 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~--~~~~~~~~iVvDEah~~~~~~~~~~~ 211 (427)
+..+... .+.++.+.......+....++|+|+||++|...+.... ..+..+.+||+||||++.. ...
T Consensus 350 f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~~~ 418 (1038)
T 2w00_A 350 YQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----GEA 418 (1038)
T ss_dssp HHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----HHH
T ss_pred HHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----hHH
Confidence 9887532 11244444555555554446999999999998776432 2356788999999998753 333
Q ss_pred HHHHHHhCCCCceEEEEEccCCccHH----HHHHHhcCC-----------------CeEEEEcCCccc-----------c
Q 014314 212 VQEIFKMTPHDKQVMMFSATLSKEIR----PVCKKFMQD-----------------PMEIYVDDEAKL-----------T 259 (427)
Q Consensus 212 ~~~~~~~~~~~~~~v~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~-----------~ 259 (427)
...+...++ ..+++++||||..... .....++++ |..+........ .
T Consensus 419 ~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 419 QKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHH
Confidence 556666665 4789999999975321 011111222 222111110000 0
Q ss_pred ccceEEEEEEechhhHHHHH-HHHHHhc-----------CCCeEEEEECCchhHHHHHHHHHhCC------------CCe
Q 014314 260 LHGLVQHYIKLSELEKNRKL-NDLLDAL-----------DFNQVVIFVKSVSRAAELNKLLVECN------------FPS 315 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l-~~~l~~~-----------~~~~~ivf~~~~~~~~~l~~~L~~~~------------~~~ 315 (427)
........ ......+...+ ..+++.. .+.++||||+++..|..+++.|.+.+ +++
T Consensus 498 ~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~ 576 (1038)
T 2w00_A 498 LSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRI 576 (1038)
T ss_dssp HHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCE
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcE
Confidence 00000000 00011122222 2233321 34589999999999999999997754 455
Q ss_pred E-EecCC----------C----------CH-----------------------------HHHHHHHHhhhcCCCcEEEEe
Q 014314 316 I-CIHSG----------M----------SQ-----------------------------EERLTRYKGFKEGNKRILVAT 345 (427)
Q Consensus 316 ~-~l~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vlv~T 345 (427)
. .+|++ + ++ ..|..+++.|++|+++|||+|
T Consensus 577 avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvv 656 (1038)
T 2w00_A 577 ATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVV 656 (1038)
T ss_dssp EEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEES
T ss_pred EEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEc
Confidence 4 45542 2 22 147788999999999999999
Q ss_pred CCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCc----cEEEEEecCCccHHHHHHHH
Q 014314 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK----GLAITFVSSASDSDILNQVQ 405 (427)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~~~~~~~~~~~~~ 405 (427)
+++.+|+|+|.+ +++.+|.|.+...|+|++||++|.+.. |.++.|+. ....+...++
T Consensus 657 d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~--~~~~l~~Al~ 717 (1038)
T 2w00_A 657 GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD--LERSTIDAIT 717 (1038)
T ss_dssp STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC--CHHHHHHHHH
T ss_pred chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc--cHHHHHHHHH
Confidence 999999999999 678899999999999999999998753 66666664 3333334444
No 74
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=4.3e-31 Score=217.85 Aligned_cols=166 Identities=69% Similarity=1.078 Sum_probs=149.6
Q ss_pred cceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCc
Q 014314 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 340 (427)
..+.+.+..+....|...+..+++..+.+++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45677888888899999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 341 vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+.|.+++|+.+.++..+++.+++.++.+++++|..++
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 99999999999999999999999999999999999999999999999999998777888999999999999999999999
Q ss_pred CCCCCC
Q 014314 421 TSTYMP 426 (427)
Q Consensus 421 ~~~~~~ 426 (427)
.+.|++
T Consensus 164 ~~~~~~ 169 (172)
T 1t5i_A 164 ISSYIE 169 (172)
T ss_dssp -----C
T ss_pred hhhccc
Confidence 888875
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-28 Score=239.42 Aligned_cols=130 Identities=22% Similarity=0.187 Sum_probs=110.7
Q ss_pred CCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.|+ +|+++|..+++.++.|+ +..+.||+|||+++.+|++.....+. .++|++||++||.|.++++..+...+ +
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~---qv~VvTPTreLA~Qdae~m~~l~~~l-G 148 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK---GVHVVTVNDYLARRDAEWMGPVYRGL-G 148 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS---CCEEEESSHHHHHHHHHHHHHHHHTT-T
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 588 99999999999999998 99999999999999999965443332 78999999999999999999999887 8
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCC---CccEEEEcCCcccc
Q 014314 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLK---NVRHFILDECDKML 203 (427)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~~~~~------~~~~~---~~~~iVvDEah~~~ 203 (427)
+++.+++|+.+.......+ + ++|+|+||+.| +.+++.+ ...++ .+.++|+||+|.++
T Consensus 149 Lsv~~i~Gg~~~~~r~~ay--~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKAY--L-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCEEECCTTCCHHHHHHHH--T-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CeEEEEeCCCCHHHHHHHc--C-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999998755444433 3 69999999999 7777655 24567 89999999999987
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.1e-28 Score=244.50 Aligned_cols=108 Identities=24% Similarity=0.370 Sum_probs=103.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCC-
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 365 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~- 365 (427)
.+.++||||+++..++.+++.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCchhhhhcccccCCCCCccEEEEEecCC
Q 014314 366 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (427)
Q Consensus 366 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 395 (427)
|.|..+|+||+||+||.| .|.+++|++..
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 899999999999999985 89999998754
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=7.6e-29 Score=202.84 Aligned_cols=156 Identities=36% Similarity=0.614 Sum_probs=146.3
Q ss_pred ccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCC
Q 014314 260 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 339 (427)
...+.+.+..+....|...+..++....++++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45577888888889999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCC
Q 014314 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 416 (427)
Q Consensus 340 ~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (427)
+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++|+. ..+..+++.+++.++.+++.++
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT-AFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEEC-GGGHHHHHHHHHHHTSCCEECC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEec-HHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999997 5678889999999998887643
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1e-28 Score=202.56 Aligned_cols=158 Identities=41% Similarity=0.738 Sum_probs=141.5
Q ss_pred ceEEEEEEechhh-HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCc
Q 014314 262 GLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (427)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 340 (427)
.+.+.+..+.... |...+..+++..+.+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3566677777666 999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcccC
Q 014314 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 420 (427)
Q Consensus 341 vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (427)
|||||+++++|+|+|++++||++++|++..+|+||+||+||.|+.|.+++|+. ..+...+..+++.++.+++++|..+.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE-TTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc-chHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999997 56777889999999999999987654
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=210.75 Aligned_cols=178 Identities=29% Similarity=0.485 Sum_probs=146.1
Q ss_pred HhcCCCeEEEEcCCccccccceEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCC
Q 014314 242 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321 (427)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~ 321 (427)
.++.+|..+.+.... .....+.+.+..+....|...+..++... ++++||||+++..++.+++.|+..|+.+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 456667766665443 34467788888888889999999988875 4689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHH
Q 014314 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401 (427)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 401 (427)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+.+..+..++
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877788999
Q ss_pred HHHHHHhccccccCCcccCC
Q 014314 402 NQVQARFEVDIKELPEQIDT 421 (427)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~~ 421 (427)
+.+++.+....+.+|..+.+
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHHHHHccCcCCHHHHh
Confidence 99999998888888876543
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.1e-27 Score=237.09 Aligned_cols=141 Identities=21% Similarity=0.361 Sum_probs=118.0
Q ss_pred HHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 278 KLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 278 ~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
.+..+.... .+.++||||+++..++.+++.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|+
T Consensus 434 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~ 513 (661)
T 2d7d_A 434 LIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513 (661)
T ss_dssp HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTT
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCC
Confidence 334444333 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCC-----CCCchhhhhcccccCCCCCccEEEEEecCCcc--------HHHHHHHHHHhccccccCCccc
Q 014314 357 VNIVINYDM-----PDSADTYLHRVGRAGRFGTKGLAITFVSSASD--------SDILNQVQARFEVDIKELPEQI 419 (427)
Q Consensus 357 ~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~ 419 (427)
+++||+++. |.|..+|+||+||+||. ..|.+++|+++.+. ....+.++..++.+....|..+
T Consensus 514 v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~ 588 (661)
T 2d7d_A 514 VSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTI 588 (661)
T ss_dssp EEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCch
Confidence 999999997 99999999999999998 78999999976432 1223345555665555555444
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=202.63 Aligned_cols=158 Identities=30% Similarity=0.590 Sum_probs=142.6
Q ss_pred ccceEEEEEEechhh-HHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC
Q 014314 260 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~ 338 (427)
...+.+.+..+.... |...+..++.....+++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456778888877655 9999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCccccCCCCCCCEEEEcCCC------CCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhcccc
Q 014314 339 KRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 412 (427)
Q Consensus 339 ~~vlv~T~~~~~Gld~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (427)
.+|||||+++++|+|+|++++||++++| .+..+|+||+||+||.|+.|.+++|+.+ .+...+..+++.++.++
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV-DELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG-GGHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc-chHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 8999999999999999999999999975 56788999999999999
Q ss_pred ccCCcc
Q 014314 413 KELPEQ 418 (427)
Q Consensus 413 ~~l~~~ 418 (427)
++++..
T Consensus 164 ~~~~~~ 169 (175)
T 2rb4_A 164 KQLNAE 169 (175)
T ss_dssp EEECSS
T ss_pred cccCCc
Confidence 887754
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=203.10 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=134.9
Q ss_pred cccceEEEEEEechhhHHHHHHHHHHhc-CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC
Q 014314 259 TLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~ 337 (427)
....+.+.+..+....|...+.+++... +++++||||++++.++.+++.|+..|+.+..+||++++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3466788888888889999999999887 568999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCc
Q 014314 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 417 (427)
Q Consensus 338 ~~~vlv~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (427)
+.+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++|+. ..+...++.+.+.+....+++|.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN-ERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEEC-GGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEc-hhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999997 46677888999999888888887
Q ss_pred ccC
Q 014314 418 QID 420 (427)
Q Consensus 418 ~~~ 420 (427)
.+.
T Consensus 175 ~l~ 177 (185)
T 2jgn_A 175 WLE 177 (185)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=9.3e-28 Score=204.81 Aligned_cols=153 Identities=27% Similarity=0.492 Sum_probs=140.6
Q ss_pred EEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEE
Q 014314 264 VQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv 343 (427)
.+.........|...+..++....++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34456677788999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCc
Q 014314 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 417 (427)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (427)
||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|++. .+...++.+++.++..++.++.
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG-GGHHHHHHHHHHHSSCCEECCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch-hHHHHHHHHHHHhcCcCeecCC
Confidence 999999999999999999999999999999999999999999999999974 6778899999999988877664
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=6e-27 Score=208.81 Aligned_cols=155 Identities=28% Similarity=0.491 Sum_probs=139.9
Q ss_pred eEEEEEEechhhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEE
Q 014314 263 LVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vl 342 (427)
+.+.++.+....|...+..++....++++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 45667778888899999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCcc
Q 014314 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 418 (427)
Q Consensus 343 v~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (427)
|||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.|++|++ ..+...++.+++.++..+..++.+
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~-~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG-PRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEEC-SSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeC-hHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999997 467788899999999888876643
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=5.1e-28 Score=199.35 Aligned_cols=153 Identities=37% Similarity=0.538 Sum_probs=138.1
Q ss_pred EEEEEEech-hhHHHHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEE
Q 014314 264 VQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342 (427)
Q Consensus 264 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vl 342 (427)
.+.+..+.. ..|...+..+++...++++||||++++.++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 444555555 6788888888888777899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEEEEEecCCccHHHHHHHHHHhccccccCCc
Q 014314 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 417 (427)
Q Consensus 343 v~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (427)
|||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++++.. .+...+..+++.++.++...+.
T Consensus 85 vaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 85 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999999974 5677888999988888866543
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=3.6e-24 Score=208.08 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEE--EeCCccccCCCCC----CCEE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV--ATDLVGRGIDIER----VNIV 360 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv--~T~~~~~Gld~~~----~~~v 360 (427)
.+++++||++|...++.+++.|.. .. ...++.. ..|..+++.|+++. .||+ +|..+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457999999999999999988865 23 3455543 46788899998864 5777 7899999999998 8899
Q ss_pred EEcCCCCCc------------------------------hhhhhcccccCCCCCccEEEEEecC
Q 014314 361 INYDMPDSA------------------------------DTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 361 i~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
|+++.|... ..+.|.+||+.|..++..+++++++
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999988521 2346999999997655556666664
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=188.00 Aligned_cols=164 Identities=19% Similarity=0.190 Sum_probs=116.9
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC---CCCeEEEEEeCchHHHHH-HHHHHHHHhcc
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQ-ICHEFERFSTY 140 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q-~~~~~~~~~~~ 140 (427)
....|+++|.++++.++.++++++.+|||+|||++++++++..+... ....++||++|+++|+.| +.+.++.+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 44589999999999999999999999999999999999888754321 123389999999999999 88888888754
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC------CCCCCccEEEEcCCcccccCCCcHHHHHH
Q 014314 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD------LSLKNVRHFILDECDKMLESLDMRRDVQE 214 (427)
Q Consensus 141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~------~~~~~~~~iVvDEah~~~~~~~~~~~~~~ 214 (427)
++++..++|+............. ++|+|+||+.+...+.... ..+.++++||+||||.+.....+...+..
T Consensus 110 --~~~v~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 110 --WYRVIGLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp --TSCEEECCC---CCCCHHHHHHH-CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred --CceEEEEeCCcccchhHHhhccC-CCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 67888888876554433333333 5999999999999887643 55788999999999999763233333333
Q ss_pred HHHhC-------------CCCceEEEEEcc
Q 014314 215 IFKMT-------------PHDKQVMMFSAT 231 (427)
Q Consensus 215 ~~~~~-------------~~~~~~v~~SAT 231 (427)
+.... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 156799999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=5.5e-21 Score=186.50 Aligned_cols=312 Identities=15% Similarity=0.162 Sum_probs=195.5
Q ss_pred CCchHHHHhHhhh----hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQA----ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~----~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
.++|+|.+.+..+ ..++++++.+|||+|||++|++|++.. ..+++|++||++|+.|+.+++..+.... +
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKR-N 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSS-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhc-C
Confidence 6899999877654 458999999999999999999999982 2399999999999999999998876554 6
Q ss_pred ceEEEEEcCcch---------------------------------HHHH------------------HHHhcCCCcEEEe
Q 014314 144 IKVAVFYGGVNI---------------------------------KIHK------------------DLLKNECPQIVVG 172 (427)
Q Consensus 144 ~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~~I~v~ 172 (427)
+++..+.|..+. .... .... ..++|+|+
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~-~~adIVV~ 154 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL-YKADVIAL 154 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG-GGCSEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh-hcCCEEEe
Confidence 777777764321 0001 1111 22699999
Q ss_pred chHHHHHHHhcCCCCC-CCccEEEEcCCcccccCCC--------------------------------------------
Q 014314 173 TPGRILALARDKDLSL-KNVRHFILDECDKMLESLD-------------------------------------------- 207 (427)
Q Consensus 173 T~~~l~~~~~~~~~~~-~~~~~iVvDEah~~~~~~~-------------------------------------------- 207 (427)
|+..|+....+....+ ....++|+||||.+.+ ..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999998644333333 4677899999998764 00
Q ss_pred ----------cHHH----------------------------HHHHH----------------------------HhCCC
Q 014314 208 ----------MRRD----------------------------VQEIF----------------------------KMTPH 221 (427)
Q Consensus 208 ----------~~~~----------------------------~~~~~----------------------------~~~~~ 221 (427)
+... +..++ +.+..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 0000 00000 01112
Q ss_pred C-ceEEEEEccCCccHHHHHHHhcCC-CeEEE--EcCCccccccceEEEEEEe--ch------hhHHHHHHHHHHh---c
Q 014314 222 D-KQVMMFSATLSKEIRPVCKKFMQD-PMEIY--VDDEAKLTLHGLVQHYIKL--SE------LEKNRKLNDLLDA---L 286 (427)
Q Consensus 222 ~-~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~--~~------~~~~~~l~~~l~~---~ 286 (427)
. ..+|++|||+.+ ...+...+..+ +.... ...... +.......++.. +. ......+...+.. .
T Consensus 314 ~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~s-pf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 314 NELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQK-RVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp TTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTS-CCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCC-cCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 3 688999999986 34444443333 22100 000011 111111112111 10 1112233332222 2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEe--CCccccCCCC---C--CCE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIE---R--VNI 359 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T--~~~~~Gld~~---~--~~~ 359 (427)
.++.++||++|....+.+++ ..+.++..-..+++. ...++.|+.+...||+++ ....+|+|+| + +++
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 45799999999999999886 335555544445554 445667754344799998 6999999999 3 788
Q ss_pred EEEcCCCCC---------------------c---------hhhhhcccccCCCCCccEEEEEecCCc
Q 014314 360 VINYDMPDS---------------------A---------DTYLHRVGRAGRFGTKGLAITFVSSAS 396 (427)
Q Consensus 360 vi~~~~~~s---------------------~---------~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 396 (427)
||..+.|.. . ..+.|.+||+-|..++..++++++..-
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 532 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRF 532 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhc
Confidence 998886641 1 113589999999877766777776543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.7e-23 Score=177.42 Aligned_cols=170 Identities=17% Similarity=0.217 Sum_probs=123.5
Q ss_pred CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC--CCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
....++++|.++++.+..|+++++.||||||||+++.++++....... ...++++++|+++++.|+.+.+........
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 344679999999999999999999999999999988888777543222 245899999999999999888876654322
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCccc-ccCCCcH-HHHHHHHHhCC
Q 014314 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM-LESLDMR-RDVQEIFKMTP 220 (427)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~-~~~~~~~-~~~~~~~~~~~ 220 (427)
+..+..-..... ......++|+|+||+++++.+.. .+.++++||+||||.+ .+ .++. ..+..+....
T Consensus 138 ~~~~g~~~~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~-~~~~~~~l~~i~~~~- 206 (235)
T 3llm_A 138 GKSCGYSVRFES------ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN-TDFLLVVLRDVVQAY- 206 (235)
T ss_dssp TSSEEEEETTEE------ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH-HHHHHHHHHHHHHHC-
T ss_pred CceEEEeechhh------ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc-hHHHHHHHHHHHhhC-
Confidence 344433222111 01112368999999999998876 4789999999999986 33 4555 3555565554
Q ss_pred CCceEEEEEccCCccHHHHHHHhcCCC
Q 014314 221 HDKQVMMFSATLSKEIRPVCKKFMQDP 247 (427)
Q Consensus 221 ~~~~~v~~SAT~~~~~~~~~~~~~~~~ 247 (427)
+..|++++|||++... +...+...|
T Consensus 207 ~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 207 PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 4689999999999775 544444444
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=8.3e-23 Score=182.84 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=121.0
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.|+++|.++++.++.+++.++++|||+|||++++.++...+.... .++||++|+++|+.||.++++++... +...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~-~~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF-SHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSC-CGGGEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhccc-ccceEE
Confidence 799999999999999888999999999999999887776554322 28999999999999999999988644 255677
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
.+.++..... ......+|+|+||+.+.+. ....+.++++||+||||++.+ ..+..++..+....++++
T Consensus 190 ~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 190 KIGGGASKDD----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp ECSTTCSSTT----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTTCCEEEE
T ss_pred EEeCCCcchh----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhcCCeEEE
Confidence 7777654322 1112369999999987542 223467889999999998864 366777777777899999
Q ss_pred EEccCCccH
Q 014314 228 FSATLSKEI 236 (427)
Q Consensus 228 ~SAT~~~~~ 236 (427)
+|||+++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999998654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=2.9e-20 Score=161.18 Aligned_cols=138 Identities=19% Similarity=0.176 Sum_probs=108.6
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce-E
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-V 146 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~-~ 146 (427)
.|+++|.+++..++.++++++++|||+|||.+++.++... ..+++|++|+++|+.||.+.+.++ ++. +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCeE
Confidence 7899999999999999999999999999999988777664 127999999999999999988873 566 7
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEE
Q 014314 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (427)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (427)
..+.|+... ..+|+|+|++.+...... ....+++||+||+|.+.+ ..+ ..+...++ ..+++
T Consensus 162 ~~~~g~~~~----------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~-~~~----~~i~~~~~-~~~~l 222 (237)
T 2fz4_A 162 GEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA-ESY----VQIAQMSI-APFRL 222 (237)
T ss_dssp EEESSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT-TTH----HHHHHTCC-CSEEE
T ss_pred EEEeCCCCC----------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCC-hHH----HHHHHhcc-CCEEE
Confidence 777776542 258999999998775542 124588999999999876 333 33444444 57789
Q ss_pred EEEccCCcc
Q 014314 227 MFSATLSKE 235 (427)
Q Consensus 227 ~~SAT~~~~ 235 (427)
++|||+++.
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999999864
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=1.1e-19 Score=178.61 Aligned_cols=316 Identities=17% Similarity=0.168 Sum_probs=189.8
Q ss_pred CCchHHHHhHhhh----hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCC
Q 014314 68 HPSEVQHECIPQA----ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (427)
Q Consensus 68 ~~~~~Q~~~i~~~----~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (427)
+|++.|.+.+..+ ..|+++++.+|||+|||++|++|++..+...+ .+++|++||++++.|+.+++..+.... +
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~--~kvli~t~T~~l~~Qi~~el~~l~~~~-~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK--LKVLYLVRTNSQEEQVIKELRSLSSTM-K 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHHHHHS-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC--CeEEEECCCHHHHHHHHHHHHHHhhcc-C
Confidence 6899999888644 45999999999999999999999998764322 389999999999999999999887654 5
Q ss_pred ceEEEEEcCcchHH------------------HHH----------------------------HH---------------
Q 014314 144 IKVAVFYGGVNIKI------------------HKD----------------------------LL--------------- 162 (427)
Q Consensus 144 ~~~~~~~g~~~~~~------------------~~~----------------------------~~--------------- 162 (427)
+++..+.|+.+.-. ... .+
T Consensus 80 ~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~ 159 (620)
T 4a15_A 80 IRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGE 159 (620)
T ss_dssp CCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHH
T ss_pred eEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhh
Confidence 67766655432100 000 00
Q ss_pred -hc-----------CCCcEEEechHHHHHHHhcCC----C-CCCCccEEEEcCCcccccC--------------------
Q 014314 163 -KN-----------ECPQIVVGTPGRILALARDKD----L-SLKNVRHFILDECDKMLES-------------------- 205 (427)
Q Consensus 163 -~~-----------~~~~I~v~T~~~l~~~~~~~~----~-~~~~~~~iVvDEah~~~~~-------------------- 205 (427)
.. ..++|+|+++..++...-+.. . ....-.++||||||.+.+.
T Consensus 160 ~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~ 239 (620)
T 4a15_A 160 RNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADRE 239 (620)
T ss_dssp HTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHH
T ss_pred hcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHHH
Confidence 00 125899999988766332111 1 1234568999999987410
Q ss_pred -----CCc-------HHH-------HH-----------------------------------H-------HHH-------
Q 014314 206 -----LDM-------RRD-------VQ-----------------------------------E-------IFK------- 217 (427)
Q Consensus 206 -----~~~-------~~~-------~~-----------------------------------~-------~~~------- 217 (427)
... ... +. . +..
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 319 (620)
T 4a15_A 240 AQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKE 319 (620)
T ss_dssp HHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 000 000 00 0 000
Q ss_pred ---------------------hCC------------------------------CCceEEEEEccCCccHHHHHHHhcCC
Q 014314 218 ---------------------MTP------------------------------HDKQVMMFSATLSKEIRPVCKKFMQD 246 (427)
Q Consensus 218 ---------------------~~~------------------------------~~~~~v~~SAT~~~~~~~~~~~~~~~ 246 (427)
... ....+|++|||+.+ ...+...+..+
T Consensus 320 ~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lGl~ 398 (620)
T 4a15_A 320 KVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITGFE 398 (620)
T ss_dssp HTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHCCC
T ss_pred ccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhCCC
Confidence 000 01246899999986 44444444333
Q ss_pred CeEEEEcCCccccccceEEEEEE-e------chhhHH----HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCe
Q 014314 247 PMEIYVDDEAKLTLHGLVQHYIK-L------SELEKN----RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS 315 (427)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~----~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~ 315 (427)
...+...+.. ...+....+.. . ...... ..+..+++.. +++++||++|....+.+++.|+. ...
T Consensus 399 ~~~~~~~spf--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~--~~~ 473 (620)
T 4a15_A 399 IPFKKIGEIF--PPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVYFPSYSLMDRVENRVSF--EHM 473 (620)
T ss_dssp CCEEECCCCS--CGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS--CCE
T ss_pred ceeeecCCCC--CHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh--cch
Confidence 2222222211 11111111110 0 011111 2233444433 47799999999999999888872 222
Q ss_pred EEecCCCCHHHHHHHHHhhhcCCCcEEEEeC--CccccCCCCC--CCEEEEcCCCCCc----------------------
Q 014314 316 ICIHSGMSQEERLTRYKGFKEGNKRILVATD--LVGRGIDIER--VNIVINYDMPDSA---------------------- 369 (427)
Q Consensus 316 ~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~~~Gld~~~--~~~vi~~~~~~s~---------------------- 369 (427)
. ...+++..++..+++.|+ ++..||+++. .+.+|+|+|+ +++||..+.|...
T Consensus 474 ~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~ 551 (620)
T 4a15_A 474 K-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEY 551 (620)
T ss_dssp E-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHH
T ss_pred h-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchH
Confidence 2 555666678999999999 8888999984 8999999987 7789998887521
Q ss_pred -------hhhhhcccccCCCCCccEEEEEecC
Q 014314 370 -------DTYLHRVGRAGRFGTKGLAITFVSS 394 (427)
Q Consensus 370 -------~~~~Q~~GR~~R~g~~g~~~~~~~~ 394 (427)
....|.+||+-|...+..++++++.
T Consensus 552 ~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 552 SVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred HhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1236999999998777667777764
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=4.2e-20 Score=162.75 Aligned_cols=136 Identities=16% Similarity=0.209 Sum_probs=103.1
Q ss_pred chhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcC-CCc-EEEEe
Q 014314 271 SELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVAT 345 (427)
Q Consensus 271 ~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~-vlv~T 345 (427)
....|...+..++... .++++||||++...++.+.+.|... |+.+..+||+++..+|..+++.|+++ ... +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4557888888888776 7789999999999999999999885 99999999999999999999999998 666 78899
Q ss_pred CCccccCCCCCCCEEEEcCCCCCchhhhhcccccCCCCCccEE--EEEecCCc-cHHHHHHHHH
Q 014314 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSAS-DSDILNQVQA 406 (427)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~-~~~~~~~~~~ 406 (427)
+++++|+|++.+++||+||+||++..|.||+||++|.|+.+.+ +.++.... +..++..++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987765 44555443 3344444433
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.97 E-value=1.1e-09 Score=107.55 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=90.2
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcc--hHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKT--AVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT--~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.+.|+.+++.++.++.+++.|++|+||| ++++++.+....... +.++++++||..++.++.+.+....... ++...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~-~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC-CCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC-CCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHH
Confidence 6899999999999999999999999999 566677776543222 3489999999999999988877655433 22100
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
.. .... .....+ ..++-.+|+.. . +.........++++|||||+.+ + ...+..++..++...|+++
T Consensus 229 ~~-~~~~--~~~~Ti----h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~----~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 229 QK-KRIP--EDASTL----HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D----LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CC-CSCS--CCCBTT----TSCC-------------CTTSCCSCSEEEECSGGGC-B----HHHHHHHHHTCCTTCEEEE
T ss_pred HH-hccc--hhhhhh----HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C----HHHHHHHHHhCCCCCEEEE
Confidence 00 0000 000000 11222222211 0 1111122237889999999944 3 4567788888888899988
Q ss_pred EEcc
Q 014314 228 FSAT 231 (427)
Q Consensus 228 ~SAT 231 (427)
+.-.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 7644
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.49 E-value=2.3e-07 Score=92.18 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=52.9
Q ss_pred CCchHHHHhHhhhhcCCe-EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
.|++-|.+|+..++..++ .+|.||+|||||.+..-.+.+.+..+ .++|+++||...+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999987664 79999999999987554444444332 28999999999999998877543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.43 E-value=2.9e-06 Score=83.84 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=53.0
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
..+++.|..|+..++.+...+|.||+|+|||.+..- ++..+.... +.++++++||...+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~~-~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQG-NGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTSS-SCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHcC-CCeEEEEeCcHHHHHHHHHHHHhc
Confidence 467899999999998877899999999999976443 333332211 238999999999999998877643
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.37 E-value=5.2e-06 Score=73.18 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHHhc--CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc
Q 014314 272 ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (427)
Q Consensus 272 ~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 349 (427)
...|...+..++... .+++++||++..+..+.+..+|...++....+.|.....+ .+. .++...+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCC
Confidence 456888888888766 4579999999999999999999999999999999855432 211 234555555577777
Q ss_pred ccCC-----CCCCCEEEEcCCCCCchhh-hhcccccCCCC----CccEEEEEecCCccHHHHHHHHHH
Q 014314 350 RGID-----IERVNIVINYDMPDSADTY-LHRVGRAGRFG----TKGLAITFVSSASDSDILNQVQAR 407 (427)
Q Consensus 350 ~Gld-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~~~~~~ 407 (427)
-|+| +..++.||.||..+++..= +|.+-|+.|.| +.-.++.++....-.+..-.+.+.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKK 249 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCC
Confidence 7776 6789999999999999985 99888888863 355678888777666666666554
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.9e-06 Score=85.73 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
..+++.|.+|+..++.+.-.+|.||+|+|||.+..-.+ ..+.... +.++++++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~~-~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKIH-KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHHH-CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhCC-CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999887779999999999997644332 2221111 128999999999999998888764
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.35 E-value=5.3e-06 Score=83.67 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=52.5
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
..+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+.... +.++++++||...+.++.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~-~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQG-NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTTC-SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHcC-CCcEEEEcCcHHHHHHHHHHHHH
Confidence 35789999999999888789999999999997643 3333333212 22899999999999998887754
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.33 E-value=1.5e-06 Score=84.48 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=78.7
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEE
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (427)
.+++.|+.++..++.++.++|.|++|+|||.+. ..++..+...+ .++++++||...+..+.+.. +....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g--~~Vl~~ApT~~Aa~~L~e~~--------~~~a~ 257 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESLG--LEVGLCAPTGKAARRLGEVT--------GRTAS 257 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCEEEEESSHHHHHHHHHHH--------TSCEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhcC--CeEEEecCcHHHHHHhHhhh--------cccHH
Confidence 589999999999999999999999999999753 33333332222 27899999998887665433 11111
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEE
Q 014314 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (427)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (427)
.++. .+ ...- + ...........+++|||||++.+. ...+..++..++...++++
T Consensus 258 Tih~---------ll-----~~~~-~------~~~~~~~~~~~~dvlIIDEasml~-----~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 258 TVHR---------LL-----GYGP-Q------GFRHNHLEPAPYDLLIVDEVSMMG-----DALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp EHHH---------HT-----TEET-T------EESCSSSSCCSCSEEEECCGGGCC-----HHHHHHHHTTSCTTCEEEE
T ss_pred HHHH---------HH-----cCCc-c------hhhhhhcccccCCEEEEcCccCCC-----HHHHHHHHHhCcCCCEEEE
Confidence 1110 00 0000 0 001111233467899999999664 3456677777777777777
Q ss_pred EEc
Q 014314 228 FSA 230 (427)
Q Consensus 228 ~SA 230 (427)
+.-
T Consensus 312 vGD 314 (574)
T 3e1s_A 312 VGD 314 (574)
T ss_dssp EEC
T ss_pred Eec
Confidence 643
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.33 E-value=4.6e-05 Score=75.94 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=58.9
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCC-CCCeEEEEEeCchHHHHHHHHHHHHHhccC-CCc
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYL-PDI 144 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 144 (427)
..+++-|.+++.+ .+..++|.|+.|||||.+.+--+...+... ..+.++|++++|+..+.++.+++.++.... .++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 4689999999983 356799999999999987665555444332 222379999999999999999998775421 234
Q ss_pred eEEEE
Q 014314 145 KVAVF 149 (427)
Q Consensus 145 ~~~~~ 149 (427)
.+..+
T Consensus 86 ~v~Tf 90 (647)
T 3lfu_A 86 WVGTF 90 (647)
T ss_dssp EEEEH
T ss_pred EEEcH
Confidence 44444
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.32 E-value=2.6e-06 Score=80.99 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=78.6
Q ss_pred HhCCCCCCchHHHHhHhhhhcC----C-eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 62 VDSGFEHPSEVQHECIPQAILG----M-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 62 ~~~~~~~~~~~Q~~~i~~~~~~----~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
.-+.|..|++-|++++..++.. + .++|.|+.|||||.+. ..++..+...+. ..+++++||...+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~-- 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLS-- 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH--
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh--
Confidence 3456788999999999987642 3 7999999999999754 334433332221 26899999998877665443
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHH
Q 014314 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216 (427)
Q Consensus 137 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~ 216 (427)
+..+..++.-..... ........+.. .....+..+++||+||++.+. ...+..+.
T Consensus 95 ------~~~~~T~h~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~-----~~~~~~l~ 149 (459)
T 3upu_A 95 ------GKEASTIHSILKINP----VTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD-----RKLFKILL 149 (459)
T ss_dssp ------SSCEEEHHHHHTEEE----EECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC-----HHHHHHHH
T ss_pred ------ccchhhHHHHhccCc----ccccccchhcc----------cccccccCCCEEEEECchhCC-----HHHHHHHH
Confidence 112211110000000 00000011110 122345678999999999653 23455566
Q ss_pred HhCCCCceEEEEE
Q 014314 217 KMTPHDKQVMMFS 229 (427)
Q Consensus 217 ~~~~~~~~~v~~S 229 (427)
..++...+++++.
T Consensus 150 ~~~~~~~~~~~vG 162 (459)
T 3upu_A 150 STIPPWCTIIGIG 162 (459)
T ss_dssp HHSCTTCEEEEEE
T ss_pred HhccCCCEEEEEC
Confidence 6666566666654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.72 E-value=0.00035 Score=63.86 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+...+ +..+++++|++..|..+++.++.+....|
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 789999999987755566899999999999876655554332222 23899999999999999988888776554
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.57 E-value=0.0013 Score=64.51 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCC
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (427)
.|+|+|+..+..+...+..++.++-|+|||.+....++..+...+ +..+++++|+...+..+++.++.+....|
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999987755667999999999999876554444433333 23899999999999999998888876654
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.27 E-value=0.00077 Score=62.45 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=63.1
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (427)
-.++.|+.|+|||....- .+. . . +.+|++||++++..|.+.+.+. +.. .
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~~---~-~---~~lVlTpT~~aa~~l~~kl~~~-----~~~------------------~ 211 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RVN---F-E---EDLILVPGRQAAEMIRRRANAS-----GII------------------V 211 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HCC---T-T---TCEEEESCHHHHHHHHHHHTTT-----SCC------------------C
T ss_pred EEEEEcCCCCCHHHHHHH-Hhc---c-C---CeEEEeCCHHHHHHHHHHhhhc-----Ccc------------------c
Confidence 378999999999986432 221 1 1 5699999999999887766322 100 0
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 165 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
. ...-|.|.++++. +.........+++||||+-.+. ...+..+....+. .+++++.-.
T Consensus 212 ~-~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~~-----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 A-TKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLMLH-----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp C-CTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGSC-----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred c-ccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccCC-----HHHHHHHHHhCCC-CEEEEecCc
Confidence 0 1344778877654 2222222347899999998442 2233334444443 556665443
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=0.00069 Score=55.40 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
|+-.++.|++|+|||+..+-.+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeecc
Confidence 45578999999999987544343333222 2788888874
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.07 E-value=0.0014 Score=53.34 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.7
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
++.+++.||+|+|||...
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999753
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.05 E-value=0.00048 Score=68.77 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=58.9
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhccC--CCc
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL--PDI 144 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~ 144 (427)
.+++-|++++.+. +..++|.|+.|||||.+.+--+...+.. +-...++|+|+.|+..+.++.+++....... .++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 4789999998853 6789999999999998765544444322 1122379999999999999999998765431 235
Q ss_pred eEEEEEc
Q 014314 145 KVAVFYG 151 (427)
Q Consensus 145 ~~~~~~g 151 (427)
.+..+++
T Consensus 80 ~v~Tfhs 86 (673)
T 1uaa_A 80 MISTFHT 86 (673)
T ss_dssp EEEEHHH
T ss_pred EEEeHHH
Confidence 5655443
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.00052 Score=57.72 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (427)
|.-.++.|++|+|||+..+-.+......+. +++++.|...-- . ...+.... ++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r---~--~~~i~srl-G~~~---------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTR---S--IRNIQSRT-GTSL---------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGG---G--CSSCCCCC-CCSS----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCch---H--HHHHHHhc-CCCc----------------
Confidence 455788999999999876554444443332 788888765310 0 00111111 1100
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccc
Q 014314 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (427)
Q Consensus 163 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~ 203 (427)
..+-+.+...++..+.... .-..+++||+||++.+.
T Consensus 67 ----~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ----PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ----cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1334556666666655432 22457899999999764
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.97 E-value=0.0013 Score=53.94 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
|+-.++.|++|+|||+..+-.+......+. +++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 455788999999999876554444433322 789998874
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.95 E-value=0.0032 Score=56.87 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=24.9
Q ss_pred CchHHHHhHhhhhc----C---CeEEEEecCCCCcchHHHH
Q 014314 69 PSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~----~---~~~li~~~tGsGKT~~~~~ 102 (427)
++|+|..++..+.. + +..++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 46788877766653 3 3489999999999976543
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.92 E-value=0.0012 Score=66.34 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCchHHHHHHHHHHHHHhcc-CCCc
Q 014314 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTY-LPDI 144 (427)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~ 144 (427)
..|++-|++++.+ .+..++|.|+.|||||.+..--+...+.. +-...++|+++.|+..|.++.+++..+... ..++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 4689999999886 35679999999999998766555544432 222337999999999999999998876532 1245
Q ss_pred eEEEEEc
Q 014314 145 KVAVFYG 151 (427)
Q Consensus 145 ~~~~~~g 151 (427)
.+..+++
T Consensus 88 ~v~Tfhs 94 (724)
T 1pjr_A 88 WISTFHS 94 (724)
T ss_dssp EEEEHHH
T ss_pred EEeeHHH
Confidence 5555443
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.91 E-value=0.00094 Score=55.34 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
|+-.++.|++|+|||+..+-.+......+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 444678999999999886655555544433 7899999864
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.69 E-value=0.0022 Score=68.43 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=55.8
Q ss_pred CCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCC---CCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
.+++-|.+++..- +++++|.|..|||||.+.+--++..+.... ..-+++++++|+..+..+.+++....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 6899999998864 789999999999999987666666655432 33379999999999999999887643
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.67 E-value=0.0018 Score=54.12 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
|+-.++.|++|+|||...+-.+......+. +++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 555788999999999886666655554433 7899988764
No 116
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.54 E-value=0.0079 Score=58.69 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCchHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCce
Q 014314 68 HPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (427)
Q Consensus 68 ~~~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (427)
.+|.-|.+++..+.. ....+|.|+-|.|||.+.-+.+ ..+.. .++|.+|+.+-+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-----~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-----RAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-----CEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-----CcEEECCCHHHHHHHHH----HhhC-----
Confidence 578999999998887 3447999999999996544433 33332 46999999987664433 2210
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceE
Q 014314 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225 (427)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (427)
.|-+..|+.+.. .....+++|||||=.+- .+.+..++... ..
T Consensus 240 ----------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp-----~pll~~ll~~~----~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP-----APLLHQLVSRF----PR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC-----HHHHHHHHTTS----SE
T ss_pred ----------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC-----HHHHHHHHhhC----Ce
Confidence 144456665442 23357899999998653 35555555532 24
Q ss_pred EEEEccCC
Q 014314 226 MMFSATLS 233 (427)
Q Consensus 226 v~~SAT~~ 233 (427)
++||.|..
T Consensus 282 v~~~tTv~ 289 (671)
T 2zpa_A 282 TLLTTTVQ 289 (671)
T ss_dssp EEEEEEBS
T ss_pred EEEEecCC
Confidence 77777763
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.011 Score=52.58 Aligned_cols=19 Identities=5% Similarity=-0.151 Sum_probs=15.9
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+.+++|.||+|+|||.+.-
T Consensus 45 ~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.017 Score=48.30 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=25.7
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
....+||+||+|.+.. .....+..++........++++|.
T Consensus 101 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTA--DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567899999998854 334455566666555565555543
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.32 E-value=0.019 Score=53.25 Aligned_cols=56 Identities=13% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCccEEEEcCCcccc--cCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHhc
Q 014314 189 KNVRHFILDECDKML--ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (427)
Q Consensus 189 ~~~~~iVvDEah~~~--~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (427)
..++++|+|++-+.. ....+...+..+.....+..-++.++|+........+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 467899999998754 33456667777777766666677888887666555555443
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.32 E-value=0.014 Score=45.47 Aligned_cols=38 Identities=5% Similarity=0.135 Sum_probs=23.8
Q ss_pred cEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEcc
Q 014314 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (427)
Q Consensus 192 ~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (427)
..+++||+|.+.. .....+..++.......++|+.|..
T Consensus 78 g~l~ldei~~l~~--~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTR--EQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCH--HHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCH--HHHHHHHHHHhhcCCCEEEEEECCc
Confidence 3599999998854 3444455555555555666655544
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.28 E-value=0.0028 Score=52.39 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=26.5
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
|.-.++.|++|+|||+..+-.+......+ .+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccC
Confidence 44578999999999986554444433322 27899999764
No 122
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.25 E-value=0.012 Score=52.76 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
++.+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999753
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.25 E-value=0.0071 Score=47.35 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.0
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.+..+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999964
No 124
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.19 E-value=0.041 Score=49.27 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=23.8
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
..+++++||+|.+.. ......+..++...+...++|+.|
T Consensus 105 ~~~vliiDEi~~l~~-~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-AESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGG-HHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCc-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 567899999998861 133444555555544455555543
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.17 E-value=0.0082 Score=48.86 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
++=.++.|++|||||.-.+-.+-.....+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 55588999999999965444444443332 278999887
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.11 E-value=0.003 Score=53.93 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=16.1
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3677999999999999754
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.96 E-value=0.028 Score=52.70 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
.+.+++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999754
No 128
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.02 Score=50.81 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||+|.+.. .-...+.+.+..-+....+|++|
T Consensus 81 ~~~kvviIdead~lt~--~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ--QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCH--HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCH--HHHHHHHHHHhCCCCCeEEEEEE
Confidence 4678999999998864 33444566666655556555554
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.63 E-value=0.033 Score=51.72 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=63.3
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe--CchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC--HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (427)
.-++++|++|+|||++..-.+.... ..+. +++++. |.+.-+ .++++.+.... ++.+.....+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~-~~G~--kVllv~~D~~R~aa---~eqL~~~~~~~-gvpv~~~~~~~-------- 165 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ-KRGY--KVGVVCSDTWRPGA---YHQLRQLLDRY-HIEVFGNPQEK-------- 165 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TTTC--CEEEEECCCSSTHH---HHHHHHHHGGG-TCEEECCTTCC--------
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH-HCCC--eEEEEeCCCcchhH---HHHHHHHHHhc-CCcEEecCCCC--------
Confidence 3478899999999987543333222 2222 455554 444433 23344444432 44433211111
Q ss_pred HhcCCCcEEEechHHHH-HHHhcCCCCCCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHH
Q 014314 162 LKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC 240 (427)
Q Consensus 162 ~~~~~~~I~v~T~~~l~-~~~~~~~~~~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~ 240 (427)
.|..+. ..+... .-..++++|+|.+-...........+..+.....+..-++.+.|+........+
T Consensus 166 -----------dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 166 -----------DAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp -----------CHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred -----------CHHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 111111 111100 012356788888765433223344455555555555556667777665554444
Q ss_pred HHh
Q 014314 241 KKF 243 (427)
Q Consensus 241 ~~~ 243 (427)
..+
T Consensus 233 ~~f 235 (443)
T 3dm5_A 233 LAF 235 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.11 Score=46.94 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCC
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (427)
.+.+++|+||+|.+. ......+.+.+...+....+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLT--KDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSC--HHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccC--HHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 467899999999853 2445556666666666666666665544
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.31 E-value=0.023 Score=50.93 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=32.4
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhh-----hcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA-----ILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~-----~~~~~~li~~~tGsGKT~~~ 100 (427)
....|+++.-...+++.|...-. .|.. .+.+ ...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44568888878888887765411 1111 1111 12456999999999999754
No 132
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.30 E-value=0.11 Score=45.10 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.1
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
+.+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997643
No 133
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.25 E-value=0.028 Score=50.94 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
...++|++||+|.+.. .....+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~--~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA--DAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCH--HHHHHHHHHHHhcCCCceEEEEeC
Confidence 3557899999998854 334455566666555555665543
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.19 E-value=0.014 Score=52.00 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999764
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.15 E-value=0.042 Score=50.53 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=21.3
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEe
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (427)
.++|.||+|+|||...- .+...+.... ...++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhc-CeeEEEEe
Confidence 79999999999997543 3333333221 12455554
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.01 E-value=0.043 Score=50.35 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 567999999999999754
No 137
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.98 E-value=0.058 Score=54.28 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-ccccCCCCCCCEEEE
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVIN 362 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gld~~~~~~vi~ 362 (427)
+.+++|.++++.-+.+.++.+++. ++++..+||+++..++...++.+.+|..+|+|+|.. +...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 578999999999888888777643 789999999999999999999999999999999964 445677888888774
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.073 Score=47.50 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||+|.+.. .....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~--~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCH--HHHHHHHHHHHhcCCCCeEEEEe
Confidence 4567899999998854 33445556666655556555544
No 139
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.57 E-value=0.36 Score=43.25 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
..|+++.-.....+.+... -..+...-....++++.||+|+|||..+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~--------l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVF--------IAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHH--------HHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHH--------HHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 3566666666666555421 0111000112356999999999999754
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.083 Score=48.43 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456999999999999754
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.24 E-value=0.23 Score=41.75 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=23.0
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEc
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (427)
.-.+||+||+|.+.. .....+...+...+....+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH--HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH--HHHHHHHHHHhcCCCceEEEEEeC
Confidence 456899999998743 333444455554444454555543
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.15 E-value=0.35 Score=43.92 Aligned_cols=39 Identities=8% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
....+||+||+|.+.. .....+...+...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~--~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCH--HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcH--HHHHHHHHHHhcCCCceEEEEEe
Confidence 4567899999998854 33344555555555555455444
No 143
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.06 E-value=0.14 Score=47.60 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc----ccCCCCCCCE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG----RGIDIERVNI 359 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~----~Gld~~~~~~ 359 (427)
.+.++||.++++.-+.++++.++. .++++..++|+.+..++....+.+..|..+|+|+|.-.- .-+++..+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567899999999999999999988 588999999999998888888888889899999995321 1245567777
Q ss_pred EEE
Q 014314 360 VIN 362 (427)
Q Consensus 360 vi~ 362 (427)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 144
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.03 E-value=0.19 Score=40.21 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=54.0
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++..+..+...+... ++.+..++|+.+..... ..+.++..+|+|+|.- -...+++..++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~Gid~~~~~ 104 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV------CARGIDVKQVT 104 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS------CCTTTCCTTEE
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc------hhcCCCcccCC
Confidence 8999999999999888777653 67899999998765543 3445677899999942 23456788888
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 105 ~Vi~~ 109 (175)
T 2rb4_A 105 IVVNF 109 (175)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.084 Score=47.02 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=24.2
Q ss_pred CccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 190 ~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+||+||+|.+.. .....+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--GAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCH--HHHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCH--HHHHHHHHHHhccCCCceEEEEe
Confidence 367899999998854 22334455555555556666655
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.075 Score=48.65 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..++|.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999753
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.76 E-value=0.65 Score=41.19 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999754
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.15 Score=46.00 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=26.5
Q ss_pred CCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...+++|+||+|.+.. .....+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN--AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 3578999999998854 33455666666666666666554
No 149
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.65 E-value=0.64 Score=37.77 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=53.8
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++..+..+.+.++.. ++.+..++|+.+..... ..+.++...|+|+|. +. ...+++..++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~--~~----~~Gldi~~v~ 124 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD--VA----SKGLDFPAIQ 124 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH--HH----HTTCCCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC--ch----hcCCCcccCC
Confidence 7999999999999998888765 67899999988765443 334556679999993 22 2456788888
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 125 ~VI~~ 129 (191)
T 2p6n_A 125 HVINY 129 (191)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88763
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.54 E-value=0.11 Score=48.82 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.7
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999754
No 151
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.38 E-value=0.32 Score=45.91 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCccccCCCCC
Q 014314 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (427)
Q Consensus 277 ~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld~~~ 356 (427)
..+...++. .+.++++.|.+...++.+.+.|.+.++.+...... ..+..| .|.|+...+..|+-+|.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccCC
Confidence 344445533 24789999999999999999999988775543221 012233 57777788999999999
Q ss_pred CCEEEEc
Q 014314 357 VNIVINY 363 (427)
Q Consensus 357 ~~~vi~~ 363 (427)
.+.+|..
T Consensus 439 ~klaVIT 445 (483)
T 3hjh_A 439 RNLALIC 445 (483)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8887764
No 152
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.31 E-value=0.13 Score=41.81 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=69.9
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH-HHHHHHHHHHHhccCCCceEEEEEcCcchHHH--HH
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL-AYQICHEFERFSTYLPDIKVAVFYGGVNIKIH--KD 160 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L-~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~ 160 (427)
..+++..++|.|||.+++-.++..+..+. +++|+.=.+.- -..-...+.++ ++.+...-.+.....+ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH-----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG-----TCEEEECCTTCCCCGGGHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC-----CcEEEEcccccccCCCCcHH
Confidence 46888999999999998887777776654 77777433310 00000111222 2222211111100000 00
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCCcccccC-CCcHHHHHHHHHhCCCCceEEEEEccCCccHHHH
Q 014314 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239 (427)
Q Consensus 161 ~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~ 239 (427)
... .+ ...+...... +.-..+++||+||+-..... .--...+..++...+....+|+.+-.+|+.+...
T Consensus 101 ~~~----~a-----~~~l~~a~~~-l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 101 DTA----AC-----MAVWQHGKRM-LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHH----HH-----HHHHHHHHHH-TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHH----HH-----HHHHHHHHHH-HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 000 00 1111111111 12256889999999654321 2234556677777777777777776677665554
Q ss_pred H
Q 014314 240 C 240 (427)
Q Consensus 240 ~ 240 (427)
+
T Consensus 171 A 171 (196)
T 1g5t_A 171 A 171 (196)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.23 E-value=0.45 Score=37.44 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=54.8
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.++++..+..+.+.+... ++.+..++|+.+..... ..+.++..+|+|+|.- -...+++..++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gld~~~~~ 105 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV------AARGIDIENIS 105 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTTTCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh------hhcCCchhcCC
Confidence 7899999999999988888764 67899999987665443 3445677799999932 13466788888
Q ss_pred EEEEcCC
Q 014314 193 HFILDEC 199 (427)
Q Consensus 193 ~iVvDEa 199 (427)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8886443
No 154
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.12 E-value=0.76 Score=36.18 Aligned_cols=88 Identities=13% Similarity=0.234 Sum_probs=60.7
Q ss_pred cchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEe
Q 014314 96 KTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVG 172 (427)
Q Consensus 96 KT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~ 172 (427)
|.. .+..++.... ..++||.++++..+..+...+... ++.+..++|+.+..... ..+.++...|+|+
T Consensus 17 K~~-~l~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 86 (165)
T 1fuk_A 17 KYE-CLTDLYDSIS----VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 86 (165)
T ss_dssp HHH-HHHHHHHHTT----CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHH-HHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 543 3444555432 127999999999999888877764 67889999988765443 3445677799999
Q ss_pred chHHHHHHHhcCCCCCCCccEEEEcCC
Q 014314 173 TPGRILALARDKDLSLKNVRHFILDEC 199 (427)
Q Consensus 173 T~~~l~~~~~~~~~~~~~~~~iVvDEa 199 (427)
|.- -...+++..+++||.-+.
T Consensus 87 T~~------~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 87 TDL------LARGIDVQQVSLVINYDL 107 (165)
T ss_dssp EGG------GTTTCCCCSCSEEEESSC
T ss_pred cCh------hhcCCCcccCCEEEEeCC
Confidence 942 234567788888876443
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.05 E-value=0.22 Score=46.64 Aligned_cols=52 Identities=21% Similarity=0.070 Sum_probs=30.2
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
..|.-++|.|++|+|||...+-.+.......+ .+++++..- .-..|+..++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-~~~~~l~~R~~ 249 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-MPAAQLTLRMM 249 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-CCHHHHHHHHH
Confidence 34566899999999999755544443332212 257777653 22345554443
No 156
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.03 E-value=0.22 Score=47.21 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
.+.+++.||+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 567999999999999854
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.88 E-value=0.23 Score=46.73 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=29.6
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
+..|.-++|.|++|+|||...+..+.......+ .+++++..--. ..|+..++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSSC-HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCC-HHHHHHHH
Confidence 334666999999999999765443333322111 15777764322 24444443
No 158
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.64 E-value=1.4 Score=34.88 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=61.8
Q ss_pred CCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEE
Q 014314 94 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIV 170 (427)
Q Consensus 94 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~ 170 (427)
..|.. .+..++.... ..++||.|+++..+..+.+.+... ++.+..++|+.+..... ..+.++...|+
T Consensus 16 ~~K~~-~L~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 85 (172)
T 1t5i_A 16 NEKNR-KLFDLLDVLE----FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 85 (172)
T ss_dssp GGHHH-HHHHHHHHSC----CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHH-HHHHHHHhCC----CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEE
Confidence 44553 3444554432 127999999999999988888764 67899999988765443 34456778999
Q ss_pred EechHHHHHHHhcCCCCCCCccEEEEcCC
Q 014314 171 VGTPGRILALARDKDLSLKNVRHFILDEC 199 (427)
Q Consensus 171 v~T~~~l~~~~~~~~~~~~~~~~iVvDEa 199 (427)
|+|.- -...+++..+++||.-+.
T Consensus 86 vaT~~------~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 86 VATNL------FGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp EESSC------CSTTCCGGGCSEEEESSC
T ss_pred EECCc------hhcCcchhhCCEEEEECC
Confidence 99942 234567788888886443
No 159
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.054 Score=50.26 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=38.2
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+...|++.+-...+++.|.+. .+.+|..++...++ ..+.+|+.||+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 445799999888888888754 23455555544332 2467999999999999753
No 160
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.01 E-value=0.099 Score=40.33 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=16.2
Q ss_pred hcCCeEEEEecCCCCcchH
Q 014314 81 ILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~ 99 (427)
..+.++++.|++|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4567899999999999974
No 161
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.00 E-value=4.8 Score=35.83 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=28.8
Q ss_pred hHHHHHHHhcCCCCCCCccEEEEcCCccccc--CCCcHHHHHHHHHhCCCCceEEEEE
Q 014314 174 PGRILALARDKDLSLKNVRHFILDECDKMLE--SLDMRRDVQEIFKMTPHDKQVMMFS 229 (427)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~iVvDEah~~~~--~~~~~~~~~~~~~~~~~~~~~v~~S 229 (427)
...++..+..... .--+||+||+|.+.. ...+...+..+....+ ...+|+.+
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 3445554443211 233789999999864 2456666666665542 34444443
No 162
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.92 E-value=0.66 Score=38.40 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=54.0
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+.+.+... ++.+..++|+.+...+. ..+.++..+|+|+|.- -...+++..++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gidi~~v~ 101 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV------AARGLDIPQVD 101 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT------TTCSSSCCCBS
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh------hhcCCCCccCc
Confidence 8999999999999988888765 67899999998765544 3445677899999932 23467788888
Q ss_pred EEEE
Q 014314 193 HFIL 196 (427)
Q Consensus 193 ~iVv 196 (427)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 163
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.89 E-value=0.32 Score=42.73 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
++-+++.|++|+|||+....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 55688999999999976543
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.84 E-value=0.08 Score=47.04 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=25.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
..|+++.-.+...+.+... +.. -...++++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 3466665566666666533 100 01124999999999999754
No 165
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.061 Score=49.23 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+...|++.+-....++.|.+. .+.+|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 456799998788888888765 2334444443332 22467999999999999753
No 166
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.43 E-value=1 Score=43.55 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=58.4
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.|+++.-+..+++.+...... ++.+..++|+....... ..+.++..+|+|+|.- -...+++.++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 411 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNV 411 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCCcccC
Confidence 38999999999999999988876532 67899999998765543 3345577899999952 2356788889
Q ss_pred cEEEEcCC
Q 014314 192 RHFILDEC 199 (427)
Q Consensus 192 ~~iVvDEa 199 (427)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 98886543
No 167
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.36 E-value=0.63 Score=49.19 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=63.7
Q ss_pred cCCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC-CccccCCCCCCCEE
Q 014314 286 LDFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIV 360 (427)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gld~~~~~~v 360 (427)
..+.+++|.+++..-+.++++.+++. ++.+..+++..+..++...++....|..+|+|+|. .+...+.+.++++|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 35579999999999999888888643 57889999999999999999999999999999994 45556777777776
Q ss_pred EE
Q 014314 361 IN 362 (427)
Q Consensus 361 i~ 362 (427)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 168
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.23 E-value=0.77 Score=37.03 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcE
Q 014314 93 GMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQI 169 (427)
Q Consensus 93 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I 169 (427)
.+.|.. .+.-++..... ..++||.++++..+..+.+.++.. ++.+..++|+.+.... ...+.++...|
T Consensus 29 ~~~K~~-~L~~ll~~~~~---~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 99 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATGK---DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPI 99 (185)
T ss_dssp GGGHHH-HHHHHHHHC-C---CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSE
T ss_pred cHHHHH-HHHHHHHhcCC---CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 345654 34455554322 227999999999999888877763 6788999998754433 34455566799
Q ss_pred EEechHHHHHHHhcCCCCCCCccEEEE
Q 014314 170 VVGTPGRILALARDKDLSLKNVRHFIL 196 (427)
Q Consensus 170 ~v~T~~~l~~~~~~~~~~~~~~~~iVv 196 (427)
+|+|.- + ...+++..+++||.
T Consensus 100 LvaT~~-~-----~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 100 LVATAV-A-----ARGLDISNVKHVIN 120 (185)
T ss_dssp EEEEC------------CCCSBSEEEE
T ss_pred EEEcCh-h-----hcCCCcccCCEEEE
Confidence 999932 2 23457778888876
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.03 E-value=0.19 Score=44.94 Aligned_cols=52 Identities=23% Similarity=0.141 Sum_probs=31.5
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
+..|.-++|.|++|+|||...+-.+...... +.+++|++.- .-..|+..++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC-CCHHHHHHHHH
Confidence 3446669999999999997654444333322 1277887753 33455555543
No 170
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.01 E-value=1.4 Score=40.49 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=54.1
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.++++..+..+++.++.. ++.+..++|+........ .+.++..+|+|+|. ++ ...+++.++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~--~~----~~Gidip~v 345 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA--VA----ARGLDISNV 345 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH--HH----HTTSCCCCE
T ss_pred CeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC--hh----hcCCCcccC
Confidence 38999999999999988888764 678999999887654433 34456679999995 22 246788888
Q ss_pred cEEEE
Q 014314 192 RHFIL 196 (427)
Q Consensus 192 ~~iVv 196 (427)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 171
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.99 E-value=1.3 Score=37.54 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=52.9
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----c--cccCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----V--GRGIDIE 355 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~--~~Gld~~ 355 (427)
...++||.++++.-+..+++.+++. ++.+..++|+.+...+...+ .+..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4467999999999999888777654 78899999998866544332 246789999942 1 1356777
Q ss_pred CCCEEEE
Q 014314 356 RVNIVIN 362 (427)
Q Consensus 356 ~~~~vi~ 362 (427)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7887774
No 172
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.86 E-value=0.44 Score=50.11 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCeEEEEECCchhHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCcc-c---cCCCCCCCE
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG-R---GIDIERVNI 359 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~-~---Gld~~~~~~ 359 (427)
.+.++||.++++.-+.++++.++. .++.+..+||+++..++....+.+.+|..+|+|+|.-.- . -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 457899999999999999999998 567899999999988888888889999999999995211 1 145667888
Q ss_pred EEE
Q 014314 360 VIN 362 (427)
Q Consensus 360 vi~ 362 (427)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 173
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.42 E-value=1.5 Score=42.68 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=59.0
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.|+++.-+..+++.++..... ++.+..++|+....... ..+.++..+|+|+|.- ....+++.++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiDip~v 360 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNV 360 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCCcccC
Confidence 38999999999999999988876542 67899999998765543 3345567799999952 2356788889
Q ss_pred cEEEEcCCc
Q 014314 192 RHFILDECD 200 (427)
Q Consensus 192 ~~iVvDEah 200 (427)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 998865443
No 174
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.37 E-value=0.44 Score=43.94 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.0
Q ss_pred CeEEE--EecCCCCcchHH
Q 014314 84 MDVIC--QAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li--~~~tGsGKT~~~ 100 (427)
..++| .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45888 899999999753
No 175
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.22 E-value=5.7 Score=39.18 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=59.5
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++..+..+.+.+... ++++..++|+......... +.++..+|+|+|.- -...+++..++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~------l~~GlDip~v~ 515 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL------LREGLDIPEVS 515 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC------CSTTCCCTTEE
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch------hhCCcccCCCC
Confidence 8999999999999888877764 6788889988766555444 45577899999951 24567888999
Q ss_pred EEEEcCCccc
Q 014314 193 HFILDECDKM 202 (427)
Q Consensus 193 ~iVvDEah~~ 202 (427)
+||+-+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999988754
No 176
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.98 E-value=0.33 Score=44.94 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred hHHHHhHhhhhc--CCeEEEEecCCCCcchHHHHHhhhccCC
Q 014314 71 EVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 71 ~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
+-+..++..++. +.-++|.||||||||+. +-.++..+..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l~~ 193 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQELNS 193 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhcCC
Confidence 344555655543 44588999999999975 3334444433
No 177
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.88 E-value=0.76 Score=44.05 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=54.8
Q ss_pred CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 346 (427)
.+.+||.++++.-+....+.|+..|+.+..++++.+..++......+..|..+++++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999988888889999999999995
No 178
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.70 E-value=1.3 Score=36.67 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=53.2
Q ss_pred CeEEEEECCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c-----cccCCCCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIERV 357 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~~Gld~~~~ 357 (427)
.++||.++++.-+..+++.+++. +..+..++|+.+...+... +.++..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998887764 6889999999887665433 44566789999952 1 234567778
Q ss_pred CEEEE
Q 014314 358 NIVIN 362 (427)
Q Consensus 358 ~~vi~ 362 (427)
+++|.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 179
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.70 E-value=0.12 Score=47.92 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=35.4
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+...|++.+-....++.|.+. .+.+|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 455799998777777777654 2233333333321 22467999999999999753
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.66 E-value=3.1 Score=36.93 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=35.2
Q ss_pred ccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEEEccCCccHHHHHHHh
Q 014314 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (427)
Q Consensus 191 ~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (427)
.+++++|.+............+..+.+.+.+...++.+.++........+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45688998876543345556666666666667778888888776665555544
No 181
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.53 E-value=0.35 Score=48.58 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
-+.+|+.||+|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999753
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.41 E-value=0.6 Score=51.62 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (427)
++.+++.||+|+|||..+...+.+....+. +++++...-.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEcccc
Confidence 678999999999999876554444443322 6777776533
No 183
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.28 E-value=0.14 Score=45.25 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=32.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHhCC---CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 43 IHSSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 43 ~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
.....|+++.-...+++.|...- +..+..++.. .+..++.+++.||+|+|||+.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHH
Confidence 34556888877777777666430 1111111110 1223677999999999999754
No 184
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.20 E-value=0.17 Score=47.06 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=36.1
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+...|++.+-...+++.|.+. .+.+|-.++... +...+.+|+.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 346799998888888888764 122333333322 123567999999999999753
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.18 E-value=0.55 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.0
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 186
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.14 E-value=0.76 Score=44.77 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=53.6
Q ss_pred CCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhh--hcCCCcEEEEeC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGF--KEGNKRILVATD 346 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f--~~~~~~vlv~T~ 346 (427)
.+.+||.++++.-+....+.|+..|+.+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 57899999999999999999999999999999999999988888877 468899999996
No 187
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.89 E-value=0.49 Score=39.09 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=27.2
Q ss_pred CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchH
Q 014314 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~ 99 (427)
+..-+.-|..++..+..|.-+.|.||.|+|||+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3334556777888888898899999999999974
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.84 E-value=0.53 Score=44.81 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHhCCCCCCchHHHHhHhh-hhcCCeEEEEecCCCCcchHHHHHhhhcc
Q 014314 59 RAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 59 ~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
..|.+.|. +.+.+...+.. +..|..++|.||||||||+. +-.++..+
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl-L~aL~~~i 284 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT-LNAIMMFI 284 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH-HHHHGGGS
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 44555553 23333333332 34577899999999999974 33344444
No 189
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.24 Score=45.61 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=36.7
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+..+|++.+--..+++.|.+. .+.+|--++...++ ..+.+|+.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 446799998777777777654 23345444443322 2467999999999999753
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.69 E-value=0.31 Score=41.32 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=30.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
.|.-++|.|++|+|||...+..+......+. +++++.... ...++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccC-CHHHHHHHHH
Confidence 4677899999999999764433333332221 567776433 3455555444
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.65 E-value=0.18 Score=44.03 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHH-HHhHhh--hhcCCeEEEEecCCCCcchHH
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQ--AILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~--~~~~~~~li~~~tGsGKT~~~ 100 (427)
...|+++.-....++.+...-. .+.+ .+.+.. +...+.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4567777777777777764310 0100 111111 134667999999999999754
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.42 E-value=0.46 Score=42.32 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=31.8
Q ss_pred cCCCCCCCCCCHHHHHHHHhCC---CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
....|+++.-...+++.|.+.- +..+..++ ......+.+++.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHH
Confidence 3457888887777777776431 11111111 00112467999999999999754
No 193
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.34 E-value=0.61 Score=41.09 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=27.5
Q ss_pred eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHH
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 127 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 127 (427)
-++|.+|+|+|||...+-.+.+......+ .+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g-~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPD-AVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTT-CEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCC-ceEEEEeccchhh
Confidence 58999999999997655544443322112 2788888765553
No 194
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.87 E-value=0.47 Score=43.04 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.5
Q ss_pred hcCCeEEEEecCCCCcchH
Q 014314 81 ILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~ 99 (427)
..|..++|.||||||||+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3588899999999999974
No 195
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.57 E-value=0.51 Score=42.18 Aligned_cols=18 Identities=39% Similarity=0.614 Sum_probs=16.0
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.|..++|.||||||||+.
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 488899999999999973
No 196
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=87.55 E-value=9.5 Score=34.39 Aligned_cols=76 Identities=9% Similarity=0.194 Sum_probs=57.8
Q ss_pred eEEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014314 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (427)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 191 (427)
.++||.++++.-+..+++.++.. +..+..++|+.+..... +.+.++..+|+|+|.- -...+++.++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~~ 312 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV------LARGIDIPTV 312 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG------GSSSCCCTTE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhcCCCcccC
Confidence 38999999999999988888764 67888999988765443 3445666799999952 2456788899
Q ss_pred cEEEEcCCcc
Q 014314 192 RHFILDECDK 201 (427)
Q Consensus 192 ~~iVvDEah~ 201 (427)
++||.-....
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9998766553
No 197
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.48 E-value=2.1 Score=36.01 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCeEEEEECCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----cc-ccCCCCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VG-RGIDIERV 357 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~-~Gld~~~~ 357 (427)
+.++||.++++.-+.++.+.++. .++.+..++|+.+...+...+. . ..+|+|+|.- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999998888777655 4889999999998776654443 2 4789999952 11 23567788
Q ss_pred CEEEE
Q 014314 358 NIVIN 362 (427)
Q Consensus 358 ~~vi~ 362 (427)
+++|.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 198
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.32 E-value=1.6 Score=39.99 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCC---CCCCeEEEEEeCc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHT 123 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~ 123 (427)
|.-+.|.||+|+|||......++..... +....+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3458999999999997654333332221 1112367887654
No 199
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=87.27 E-value=1.5 Score=38.55 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=53.5
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+.+.+... ++.+..++|+.+...+.. .+.++..+|+|+|.- -...+++..++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~~Gidi~~v~ 98 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AARGLDIPQVD 98 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TTCSTTCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hhcCcccccee
Confidence 7899999999888887776553 778999999977655443 345577899999942 23466788888
Q ss_pred EEEEcC
Q 014314 193 HFILDE 198 (427)
Q Consensus 193 ~iVvDE 198 (427)
+||.=+
T Consensus 99 ~VI~~d 104 (300)
T 3i32_A 99 LVVHYR 104 (300)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 888533
No 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.25 E-value=0.95 Score=52.41 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhCCCCCCchHHHHhH----hhhhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHH
Q 014314 53 LKPELLRAIVDSGFEHPSEVQHECI----PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (427)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~~Q~~~i----~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (427)
+...+.+.+.++|+ ++.+.+..=+ ..+...+.+++.||||+|||.++-..+-....-.+......++-|-.--..
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~ 951 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKD 951 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchh
Confidence 34556677777887 4555543322 223336779999999999998865433222111122235566777544444
Q ss_pred HHH
Q 014314 129 QIC 131 (427)
Q Consensus 129 q~~ 131 (427)
|.+
T Consensus 952 eLy 954 (3245)
T 3vkg_A 952 QLF 954 (3245)
T ss_dssp HHH
T ss_pred hhc
Confidence 444
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.18 E-value=0.19 Score=46.49 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=34.9
Q ss_pred cCCCCCCCCCCHHHHHHHHhC---CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
+...|++.+-...+++.|.+. .+.+|--++...+ ...+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 345788988777777777654 2223333333222 22466999999999999753
No 202
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.94 E-value=0.4 Score=44.77 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=29.5
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (427)
...+++|.|+||||||... ..++..+...+ ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g--~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRG--DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTT--CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCC--CcEEEEeCCCchhH
Confidence 4678999999999999874 23333322222 26788888877754
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.93 E-value=3.1 Score=36.31 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=15.4
Q ss_pred cCCeEEEEecCCCCcchHHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~ 102 (427)
.++-+.+.++.|+|||+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345577789999999975443
No 204
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.74 E-value=10 Score=37.35 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=58.8
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++..+..+.+.+... ++++..++|+......... +.++..+|+|+|.- -...+++..++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~------l~~GlDip~v~ 509 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL------LREGLDIPEVS 509 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC------CCTTCCCTTEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh------hhcCccCCCCC
Confidence 8999999999999888877764 6788888988766555444 55677899999832 14567888999
Q ss_pred EEEEcCCccc
Q 014314 193 HFILDECDKM 202 (427)
Q Consensus 193 ~iVvDEah~~ 202 (427)
+||+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9998887754
No 205
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.40 E-value=0.36 Score=41.34 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHhC--CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 46 SGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 46 ~~~~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
..|+++.-...+.+.+.+. .+..+..+.... +...+.+++.||+|+|||..+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 3566666566666666532 011111111111 123466999999999999754
No 206
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.19 E-value=0.2 Score=39.97 Aligned_cols=59 Identities=7% Similarity=0.047 Sum_probs=41.5
Q ss_pred chHHHHhHhhhhcCC--eEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHH
Q 014314 70 SEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (427)
.+-|..++..++... -.+|.+.-|++|+...+..++......+. ++.+++|+..-....
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr--~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGR--EVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTC--CEEEECSTTHHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCe--EEEEEcCchHHHHHH
Confidence 466888998887743 47889999999998754444443333332 899999998765544
No 207
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=85.99 E-value=2.7 Score=39.01 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=54.0
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+.+.+... ++.+..++|+........ .+.++..+|+|+|.- -...+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------ASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG------GTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh------hhCCCCcccCC
Confidence 4899999999999888877764 778999999987655443 445677899999962 23567888899
Q ss_pred EEEE
Q 014314 193 HFIL 196 (427)
Q Consensus 193 ~iVv 196 (427)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 208
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.80 E-value=0.17 Score=43.95 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=27.2
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHH-HHhHhhhh--cCCeEEEEecCCCCcchH
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQAI--LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~~~--~~~~~li~~~tGsGKT~~ 99 (427)
+...|++++-...+.+.|...-. .|+. ..++..+- -.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 34568888777777777764311 1221 12222221 134599999999999974
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.76 E-value=0.71 Score=40.80 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.9
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 210
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=85.45 E-value=2.8 Score=38.33 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=54.9
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+++.+... +..+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~~~ 336 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGIDVEQVS 336 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTSSCCCTTEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cccCCCccCCC
Confidence 8999999999999998888765 67888999988765543 3445666799999952 24567888999
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 337 ~Vi~~ 341 (412)
T 3fht_A 337 VVINF 341 (412)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 98853
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.21 E-value=0.46 Score=38.12 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=15.8
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.|+-++|.||+|+|||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999753
No 212
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.17 E-value=0.45 Score=38.78 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
++-++|.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 566899999999999653
No 213
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=85.15 E-value=2.9 Score=38.27 Aligned_cols=71 Identities=14% Similarity=0.273 Sum_probs=54.2
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+.+.+... ++.+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v~ 346 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WARGLDVPQVS 346 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GSSSCCCTTEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhCcCCcccCC
Confidence 8999999999999888877764 67888999988765443 3345566799999952 24567888899
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 347 ~Vi~~ 351 (410)
T 2j0s_A 347 LIINY 351 (410)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88863
No 214
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.95 E-value=1.3 Score=39.34 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCC---CCCeEEEEEeCchHH-HHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTREL-AYQICHEFER 136 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L-~~q~~~~~~~ 136 (427)
|.-++|.|++|+|||...+..+....... ..+.+++++.-...+ ..++.+.+++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55689999999999976554444322220 112277888765432 3444444443
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.80 E-value=0.43 Score=41.01 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.6
Q ss_pred hhcCCeEEEEecCCCCcchH
Q 014314 80 AILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~ 99 (427)
+..|.-++|.||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44577799999999999974
No 216
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.77 E-value=3 Score=37.79 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=55.3
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.++++..+..+++.+... ++.+..++|+.+.... .+.+.++...|+|+|.- -...+++..++
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~~~~ 320 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVN 320 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC------CSSCBCCTTEE
T ss_pred cEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh------hhcCCCcccCC
Confidence 8999999999999988887764 6788899998765544 33445667799999942 23467888899
Q ss_pred EEEEcCC
Q 014314 193 HFILDEC 199 (427)
Q Consensus 193 ~iVvDEa 199 (427)
+||.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8887544
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.72 E-value=1.3 Score=37.98 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.1
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.+..+++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999753
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.64 E-value=11 Score=34.72 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=15.5
Q ss_pred CCeEEEEecCCCCcchHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLS 103 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~ 103 (427)
++-+++.++.|+|||+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345777899999999765443
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.64 E-value=2.5 Score=37.31 Aligned_cols=54 Identities=13% Similarity=-0.033 Sum_probs=33.3
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
+..|.-++|.|++|+|||...+..+......+ .++++++-- .-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHHH
Confidence 44466799999999999965554444433322 277888743 3345555555443
No 220
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=84.94 E-value=0.19 Score=40.07 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++..+..+.+.++.. ++.+..++|+.+..... ..+.++...|+|+|. .+ ...+++..++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~~~ 100 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA-----ARGIDIPDVS 100 (170)
Confidence 7899999999988888777654 66788888886654433 334455678999993 22 2345666777
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 101 ~Vi~~ 105 (170)
T 2yjt_D 101 HVFNF 105 (170)
Confidence 77653
No 221
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.42 E-value=3.4 Score=37.69 Aligned_cols=71 Identities=7% Similarity=0.121 Sum_probs=54.2
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+++.++.. +..+..++|+.+..... +.+.++..+|+|+|. .-...+++..++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred cEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 8999999999999998888775 67888999988765443 344566679999994 123467788888
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 222
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.41 E-value=2 Score=35.84 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=51.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c-----cccCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIE 355 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~~Gld~~ 355 (427)
.+.++||.++++.-+..+++.++.. ++++..++|+.+...+...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999998888764 67888999998876654432 25789999952 1 1345666
Q ss_pred CCCEEEE
Q 014314 356 RVNIVIN 362 (427)
Q Consensus 356 ~~~~vi~ 362 (427)
.++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777663
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.25 E-value=3.3 Score=39.20 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.4
Q ss_pred eEEEEecCCCCcchHHHH
Q 014314 85 DVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~ 102 (427)
.++++|++|+|||+.+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478889999999976543
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.20 E-value=0.39 Score=39.45 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.1
Q ss_pred hhcCCeEEEEecCCCCcchHH
Q 014314 80 AILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~ 100 (427)
+..++-++++||+|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 445677999999999999754
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.19 E-value=1.4 Score=38.68 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
.+++++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999754
No 226
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.11 E-value=3.4 Score=33.56 Aligned_cols=71 Identities=11% Similarity=0.280 Sum_probs=50.1
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----ccc-cCCCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VGR-GIDIER 356 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-Gld~~~ 356 (427)
+.++||.++++.-+..+++.+++. +..+..++|+.+....... + .+..+|+|+|.- +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988887653 5778889998886554322 2 346789999952 222 345667
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
++++|.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777774
No 227
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=83.94 E-value=4.7 Score=36.00 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=53.1
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.|+++.-+..+.+.++.. +..+..++|+.+..... +.+.++..+|+|+|.-.- ..+++.+++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~------~Gid~~~~~ 308 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS------RGIDVNDLN 308 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHH------HHCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhh------cCCCcccCC
Confidence 7899999999999988888764 67888999987765443 344566679999994221 235677888
Q ss_pred EEEEcC
Q 014314 193 HFILDE 198 (427)
Q Consensus 193 ~iVvDE 198 (427)
+||.-.
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887643
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.88 E-value=1.2 Score=38.07 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCCCCCCCCCHHHHHHHHhC--CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 45 SSGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
...|+++.-.+.+.+.+... .+..+..++... ....+.+++.||+|+|||+..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 34577777667666665532 011111111110 112456999999999999753
No 229
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.76 E-value=0.52 Score=44.72 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=22.7
Q ss_pred hHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 71 EVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 71 ~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
..-..++..+..+.++++.||+|+|||..+
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333455555667899999999999999753
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.75 E-value=4.1 Score=38.33 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.5
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
-+.+.|++|+|||+..
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4788999999999753
No 231
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.68 E-value=2.9 Score=34.70 Aligned_cols=72 Identities=13% Similarity=0.265 Sum_probs=48.1
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC------ccccCCCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL------VGRGIDIERV 357 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gld~~~~ 357 (427)
.+.++||.++++.-+..+++.++.. +..+..++|+.+...+... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999888774 6788889988776544333 22 34789999942 1234567778
Q ss_pred CEEEE
Q 014314 358 NIVIN 362 (427)
Q Consensus 358 ~~vi~ 362 (427)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87774
No 232
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.64 E-value=1.9 Score=36.15 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=45.1
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC-----Cccc-cCCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVGR-GIDIER 356 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gld~~~ 356 (427)
.+.++||.++++..+..+++.++.. +..+..++|+.+.... ...+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3468999999999999998888764 5677778887654332 3344556689999993 2222 356667
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887774
No 233
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.62 E-value=0.46 Score=38.16 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
...+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 456999999999999754
No 234
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.61 E-value=0.44 Score=38.14 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.9
Q ss_pred hcCCeEEEEecCCCCcchHHH
Q 014314 81 ILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~ 101 (427)
..++.+++.|++|||||+..-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 345679999999999998643
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.46 E-value=0.61 Score=38.10 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.6
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.++.+++.|++|||||+..-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46679999999999998643
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.33 E-value=0.49 Score=38.00 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=15.7
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
.+.+++.|++|||||+..-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 237
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.25 E-value=0.78 Score=42.10 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=28.5
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
..+.+++|.|+||+|||...-..+..... .+ .+++++=|..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~--~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYM-QG--SRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHT-TT--CCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHH-CC--CEEEEEeCCcCH
Confidence 35678999999999999764443333332 22 267788887663
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.25 E-value=0.51 Score=42.01 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.4
Q ss_pred CeEEEEecCCCCcchHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~ 102 (427)
+-++|.||||+|||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999976543
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.21 E-value=0.5 Score=37.64 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.9
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
++-+++.|++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999854
No 240
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.08 E-value=0.38 Score=40.83 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (427)
|.-++|.|++|+|||...+-.+.+.....+. ++++++-. .-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeeccc-CCHHHHHHHHHH
Confidence 5669999999999996554433332222111 56676643 334555555443
No 241
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.05 E-value=3.8 Score=33.26 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----cc-ccCCCCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VG-RGIDIERVN 358 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~-~Gld~~~~~ 358 (427)
.+.+++|.++++..+..+++.++.. ++++..++|+.+.......+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3467999999999999999998875 467888898877554433322 25689999951 11 245677788
Q ss_pred EEEE
Q 014314 359 IVIN 362 (427)
Q Consensus 359 ~vi~ 362 (427)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.94 E-value=0.47 Score=38.78 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.3
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.|+-+.|.||+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999974
No 243
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.93 E-value=10 Score=35.13 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=15.7
Q ss_pred eEEEEecCCCCcchHHHHHhh
Q 014314 85 DVICQAKSGMGKTAVFVLSTL 105 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~ 105 (427)
.+++++++|+|||++..-.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477789999999987554443
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.86 E-value=0.44 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=15.9
Q ss_pred hcCCeEEEEecCCCCcchH
Q 014314 81 ILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~ 99 (427)
..|.-+++.|++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466789999999999974
No 245
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=82.85 E-value=5.5 Score=28.01 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=41.4
Q ss_pred EEEEECCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCCc
Q 014314 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (427)
Q Consensus 291 ~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 340 (427)
.+||.+..+-...+...+++.|.+++.++++.....|..-++.|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 46777888888888888999999999999999988888888888755444
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.80 E-value=0.46 Score=37.64 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-+++.|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998644
No 247
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.71 E-value=1.2 Score=40.28 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 248
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.62 E-value=0.76 Score=43.01 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=30.3
Q ss_pred CCCCCCCCCCHHHHHHHHhCCC---CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 45 SSGFRDFLLKPELLRAIVDSGF---EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~---~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
...|+++.-...+.+.|...-. ..+..++ ......+.+++.||+|+|||+.+
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 3467777766776666654310 0111111 01123467999999999999754
No 249
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=82.47 E-value=12 Score=35.38 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=57.2
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
..++++.+..-+..+.+.+... +.++..++|+...... ...+.++..+|+|+|+..+.. .+++.+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 4455555565555555555432 3488899998875543 334456777999999877753 56888999
Q ss_pred EEEEcCCcccccCCCcHHHHHHHHHh
Q 014314 193 HFILDECDKMLESLDMRRDVQEIFKM 218 (427)
Q Consensus 193 ~iVvDEah~~~~~~~~~~~~~~~~~~ 218 (427)
+||+..+..-. ..+.....+.-+.
T Consensus 419 ~vi~~~~~~s~--~~~~Q~~GR~gR~ 442 (510)
T 2oca_A 419 HVVLAHGVKSK--IIVLQTIGRVLRK 442 (510)
T ss_dssp EEEESSCCCSC--CHHHHHHHHHHTT
T ss_pred EEEEeCCCCCH--HHHHHHHhccccc
Confidence 99998777221 2344444444443
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.46 E-value=0.67 Score=38.18 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.6
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.|.-+++.||+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566899999999999753
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.29 E-value=1.7 Score=38.55 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=32.0
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhc-cCC---------CCC---CeEEEEEeCchHH-HHHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQ-TEP---------NPG---QVTALVLCHTREL-AYQICHEFERF 137 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~-~~~---------~~~---~~~~lil~P~~~L-~~q~~~~~~~~ 137 (427)
|.-++|.|++|+|||...+-.+... +.. ..+ ..+++|+.-...+ ..++.+.++++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4558999999999997655444332 111 111 1478888865432 44555445443
No 252
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=81.98 E-value=0.6 Score=38.25 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.3
Q ss_pred hcCCeEEEEecCCCCcchHH
Q 014314 81 ILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~ 100 (427)
..|.-+.+.||+|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999753
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.96 E-value=0.61 Score=41.01 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-++|.||||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999997643
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.58 E-value=0.65 Score=40.78 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999997643
No 255
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.56 E-value=0.48 Score=42.32 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=18.7
Q ss_pred HhhhhcCCeEEEEecCCCCcchHH
Q 014314 77 IPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 77 i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
...+..++++++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334445789999999999999753
No 256
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=81.48 E-value=1.8 Score=45.97 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=42.0
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCCC---------CCCeEEEEEeCchHHHHHHHHHHHHHh
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQVTALVLCHTRELAYQICHEFERFS 138 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (427)
...+|.|..|||||.+...-++..+... -...++|+|+=|+..+.++.+++....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3459999999999988776666665421 123379999999999999999887643
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.39 E-value=0.66 Score=39.63 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.9
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-++|+||+|||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999997543
No 258
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=81.27 E-value=0.62 Score=49.52 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=31.8
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (427)
-+|.|..|||||.+.+--+...+..+..+.++|+++|... .-+..+++
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl 51 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYEL 51 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHH
Confidence 3788999999998876655554443333348999999763 33344444
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.23 E-value=0.67 Score=37.27 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.3
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.+..+++.|++|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 260
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.21 E-value=0.55 Score=37.50 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
...+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999754
No 261
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.97 E-value=1.5 Score=41.62 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC-CCCCCeEEEEEeCc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE-PNPGQVTALVLCHT 123 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~-~~~~~~~~lil~P~ 123 (427)
+.+++|.|+||||||.+.-..+...+. ..+...+.+++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 457999999999999764333322222 23334444444443
No 262
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.92 E-value=2 Score=35.52 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc------cccCCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV------GRGIDIER 356 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~~Gld~~~ 356 (427)
.+.++||.++++..+..+++.++.. +..+..++|+.+....... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3468999999999999888877653 6788889998765544322 22 37899999521 23456667
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777773
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.91 E-value=1 Score=37.90 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=19.3
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 30 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST--MLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhcCC
Confidence 36678999999999997 445555444
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.84 E-value=0.67 Score=36.70 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.9
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+++.|++|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999753
No 265
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.84 E-value=1.1 Score=38.22 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=29.1
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhh--cCCeEEEEecCCCCcchH
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~li~~~tGsGKT~~ 99 (427)
...|+++.-.+.....+...-.. .. ...++..+- -.+.+++.||+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 44677776666666666543110 00 012222221 134599999999999974
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.77 E-value=0.85 Score=37.23 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=15.7
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.|.-+.+.||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999753
No 267
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.71 E-value=0.64 Score=40.68 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=30.5
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCchHH-HHhHhhh-hcCCeEEEEecCCCCcchHH
Q 014314 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQA-ILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~~-~~~~~~li~~~tGsGKT~~~ 100 (427)
...|+++.-...+++.+...-. .+.. .+.+..+ ...+.+++.||+|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4567777767777776654310 0000 0001111 12567999999999999754
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.57 E-value=0.74 Score=38.41 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.1
Q ss_pred hhcCCeEEEEecCCCCcchHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~ 101 (427)
+..|.-+++.||+|+|||+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 3346778999999999996543
No 269
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=80.54 E-value=1.7 Score=49.73 Aligned_cols=68 Identities=22% Similarity=0.063 Sum_probs=39.3
Q ss_pred CHHHHHHHHhCCCCCCchHHHH----hHhhhhcCCeEEEEecCCCCcchHHHHHhh--hccCCCCCCeEEEEEeCch
Q 014314 54 KPELLRAIVDSGFEHPSEVQHE----CIPQAILGMDVICQAKSGMGKTAVFVLSTL--QQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~~Q~~----~i~~~~~~~~~li~~~tGsGKT~~~~~~~~--~~~~~~~~~~~~lil~P~~ 124 (427)
...+.+.+.+.++. +.+.+.. ....+...+.+++.||||||||.++-..+- ..+.. ....+.++-|..
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~--~~~~~~~inpk~ 964 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDG--HANVVYVIDTKV 964 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTC--CEEEEEEECTTT
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcC--CCceEEEeCCCC
Confidence 44566666677774 4555422 223333477899999999999987654332 22221 122455666643
No 270
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=80.39 E-value=0.93 Score=40.83 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=19.9
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 35566777877 666899999999764
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=80.28 E-value=0.63 Score=36.73 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-+++.|++|||||+..-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 272
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.27 E-value=1.7 Score=36.54 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=18.5
Q ss_pred cCCeEEEEecCCCCcchHHHHHhh
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTL 105 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~ 105 (427)
.|.-++|.||+|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467799999999999976554443
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.07 E-value=0.99 Score=37.26 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=23.7
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeC
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (427)
..|.-+++.|++|+|||+.....+. . .+ .+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~--~~-~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---L--SG-KKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---H--HC-SEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---H--cC-CcEEEEEC
Confidence 3466789999999999976544333 1 11 26677764
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.02 E-value=0.66 Score=36.94 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.6
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
-+++.|++|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 275
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.97 E-value=0.97 Score=39.80 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.0
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
....+++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3667999999999999753
No 276
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=79.87 E-value=1.6 Score=31.49 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+..+++++|.+-..+...+..|+..|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3468999999999999999999999998888999854
No 277
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.84 E-value=1 Score=36.75 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.7
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.|+-++|.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567799999999999975
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.51 E-value=0.8 Score=36.85 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+.-+++.|++|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=79.50 E-value=0.76 Score=37.04 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.5
Q ss_pred CeEEEEecCCCCcchH
Q 014314 84 MDVICQAKSGMGKTAV 99 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~ 99 (427)
+-+.+.||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478899999999974
No 280
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.49 E-value=0.87 Score=41.08 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.0
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.+..++|.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355689999999999974
No 281
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.41 E-value=2.5 Score=39.55 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
++.+++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4679999999999997643
No 282
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.36 E-value=0.74 Score=41.72 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
..++++.||+|+|||..+
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999854
No 283
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.35 E-value=0.82 Score=41.61 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=15.9
Q ss_pred hcCCeEEEEecCCCCcchH
Q 014314 81 ILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~ 99 (427)
..|..++|.||||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466799999999999974
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.28 E-value=0.82 Score=36.92 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.8
Q ss_pred CeEEEEecCCCCcchH
Q 014314 84 MDVICQAKSGMGKTAV 99 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~ 99 (427)
+-++|+||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.11 E-value=0.62 Score=37.40 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
|..+++.|++|||||+..-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.07 E-value=1.4 Score=44.30 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=37.1
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCC---CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 41 VGIHSSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 41 ~~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
...+...|++.+....+.+.|.+.- +.+|..++... +...+.+|+.||+|+|||+.+
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 3445667999988889888888762 22222222111 122456999999999999753
No 287
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=79.03 E-value=0.67 Score=36.81 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=15.5
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.|.-+.+.||+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556889999999999754
No 288
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=78.99 E-value=0.85 Score=37.91 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.6
Q ss_pred hcCCeEEEEecCCCCcchH
Q 014314 81 ILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~ 99 (427)
..|+-+.|.||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3477799999999999974
No 289
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=78.97 E-value=1.5 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~ 322 (427)
+..+++++|.+-..+...+..|++.|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 346899999999999999999999999988888874
No 290
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.94 E-value=5.8 Score=33.44 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c-----cccCCCCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIERV 357 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~~Gld~~~~ 357 (427)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+.......+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 368999999999999988877653 57788889887765443322 246789999952 1 123567777
Q ss_pred CEEEE
Q 014314 358 NIVIN 362 (427)
Q Consensus 358 ~~vi~ 362 (427)
+++|.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87773
No 291
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.93 E-value=7.2 Score=33.19 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC-----Cc--cccCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LV--GRGIDIE 355 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~--~~Gld~~ 355 (427)
.+.++||.++++.-+..+++.+++. +..+..++|+.+....... +..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999998888763 5677888998876655433 2333 78999994 11 1246777
Q ss_pred CCCEEEE
Q 014314 356 RVNIVIN 362 (427)
Q Consensus 356 ~~~~vi~ 362 (427)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8887774
No 292
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.88 E-value=0.88 Score=40.27 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.4
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.++|+||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997654
No 293
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.83 E-value=1.1 Score=39.80 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=19.4
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34455667777 667899999999764
No 294
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=78.81 E-value=2.7 Score=36.63 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=17.8
Q ss_pred hhcCCeEEEEecCCCCcchHHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~ 102 (427)
+..|.-++|.|++|+|||+....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34477799999999999975443
No 295
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.75 E-value=3.6 Score=34.35 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=49.2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c----cc--cCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GR--GIDIE 355 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~----~~--Gld~~ 355 (427)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+.......+ +..+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999998888764 47888899987755443332 35789999952 1 11 35666
Q ss_pred CCCEEEE
Q 014314 356 RVNIVIN 362 (427)
Q Consensus 356 ~~~~vi~ 362 (427)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777774
No 296
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.72 E-value=0.9 Score=37.80 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=15.7
Q ss_pred hhcCCeEEEEecCCCCcchH
Q 014314 80 AILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~ 99 (427)
+-.|.-++|.||.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44577799999999999974
No 297
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.38 E-value=0.86 Score=39.89 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.3
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 298
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.29 E-value=1.4 Score=40.44 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=18.8
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455667777 566899999999874
No 299
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=78.26 E-value=2.8 Score=38.90 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=41.6
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEech
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTP 174 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~ 174 (427)
+++|+||++.-+..+++.++.. +.++..++|+.. ......+.++..+|+|+|.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 7999999999999988888765 678899998743 3334455667789999995
No 300
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=78.23 E-value=1.8 Score=37.18 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|||||+ ++-++..+.
T Consensus 37 Ge~~~liG~nGsGKST--Ll~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKST--LLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHH--HHHHHTSSS
T ss_pred CCEEEEECCCCCcHHH--HHHHHhcCC
Confidence 6678999999999997 444555444
No 301
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=78.17 E-value=1.7 Score=30.69 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+..+++++|.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3478999999999999999999999998888888743
No 302
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.14 E-value=1.4 Score=39.52 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=20.9
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36777888888 566799999999874
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.09 E-value=0.84 Score=36.23 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+++.|+.|||||+..
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999754
No 304
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.98 E-value=0.98 Score=40.28 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.3
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-++|+||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999997654
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.98 E-value=3 Score=35.98 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred hCCCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHHH
Q 014314 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~ 102 (427)
..|+..+.. ++..+..|.-++|.|++|+|||+....
T Consensus 14 ~tg~~~ld~----~lggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 14 AAAPPPLDY----VLPNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp HSCCCCCCE----EETTEETTSEEEEEESTTSSHHHHHHH
T ss_pred cCCCCChhe----eECCccCCCEEEEEcCCCCCHHHHHHH
Confidence 445554432 233455688899999999999976544
No 306
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.98 E-value=0.99 Score=37.08 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=16.1
Q ss_pred hhhcCCeEEEEecCCCCcchH
Q 014314 79 QAILGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 79 ~~~~~~~~li~~~tGsGKT~~ 99 (427)
.+..|.-+.|.||+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456688899999999999974
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.96 E-value=0.95 Score=36.94 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.8
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.+.-++|.|+.|||||+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3667999999999999753
No 308
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.81 E-value=1.3 Score=39.96 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=19.8
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 45556677887 566899999999764
No 309
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=77.78 E-value=1.4 Score=37.34 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=19.3
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 34 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST--LTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36778999999999997 444555444
No 310
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.74 E-value=1.3 Score=39.82 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=19.3
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34555667777 666899999999764
No 311
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=77.72 E-value=2.2 Score=39.81 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=46.3
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iV 195 (427)
++||+||++.-+..+++.++.. ++++..++|.. .......+.++..+|+|||.- -...+++. +++||
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~v------~e~GiDip-v~~VI 245 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATDI------AEMGANLC-VERVL 245 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESSS------TTCCTTCC-CSEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECCh------hheeeccC-ceEEE
Confidence 7999999999999998888765 67888999843 333445566777899999952 23456777 88876
Q ss_pred E
Q 014314 196 L 196 (427)
Q Consensus 196 v 196 (427)
.
T Consensus 246 ~ 246 (440)
T 1yks_A 246 D 246 (440)
T ss_dssp E
T ss_pred e
Confidence 3
No 312
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.59 E-value=1.4 Score=39.41 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=20.7
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36677788887 566899999999874
No 313
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.58 E-value=1.3 Score=40.11 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=19.3
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34455667777 566899999999763
No 314
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=77.56 E-value=3.1 Score=37.22 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccCCC---CCCeEEEEEeCchHH-HHHHHHHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTREL-AYQICHEFER 136 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L-~~q~~~~~~~ 136 (427)
|.-++|.|++|+|||...+..+....... ..+.+++++.....+ ..++.+.+.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44589999999999976554444322211 012377888765432 3344444433
No 315
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=77.49 E-value=1.5 Score=36.50 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=18.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 29 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST--LLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36668899999999997 444555443
No 316
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=77.47 E-value=1.7 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+..+++++|.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3478999999999999999999999998888888743
No 317
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=77.39 E-value=1.3 Score=39.90 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=18.8
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445667777 666899999999764
No 318
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=77.33 E-value=1.5 Score=37.19 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=18.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST--IFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36668999999999997 444454443
No 319
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.29 E-value=2.3 Score=39.63 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=31.1
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
..|.-++|.|++|+|||...+-.+......+ .++++++-- .-..|+..++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSS-SCTTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECC-CCHHHHHHHHH
Confidence 3456699999999999976554444443331 267777643 23344444443
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.26 E-value=1.5 Score=37.89 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.8
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|||||+ ++-++..+.
T Consensus 34 Ge~~~iiGpnGsGKST--Ll~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKST--LFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCEEEEECCCCCCHHH--HHHHHHcCC
Confidence 6678999999999997 444555444
No 321
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=77.26 E-value=1.3 Score=39.80 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.7
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 35566677877 566799999999864
No 322
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.25 E-value=1.3 Score=39.81 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=19.6
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45556677877 566799999999763
No 323
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.20 E-value=1.4 Score=39.62 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=25.7
Q ss_pred hcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
..|.-++|.|++|+|||...+..+......+. +++++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC
Confidence 34667999999999999765544433332221 67777654
No 324
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=77.13 E-value=1.3 Score=39.73 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=18.6
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445567777 666899999999763
No 325
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=77.07 E-value=1.2 Score=39.79 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=18.4
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445556777 566899999999863
No 326
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.05 E-value=1.3 Score=39.41 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.3
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 45666778877 566899999999764
No 327
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=77.04 E-value=1.3 Score=39.80 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=25.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHH
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (427)
.|.-++|.||+|+|||+..+..+..... ..+ +++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~-~gg--~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK-MGG--VAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH-TTC--CEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCC--eEEEEeccccc
Confidence 3556899999999999754433332222 221 67777765443
No 328
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.91 E-value=1.3 Score=39.80 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=18.7
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455566777 566899999999763
No 329
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.75 E-value=1 Score=36.68 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.1
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.+.-+++.|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999998643
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=76.74 E-value=1.1 Score=36.20 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=15.7
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.+.-+++.|++|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556899999999999854
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.64 E-value=1 Score=35.39 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.2
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
++++|.|+.|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998654
No 332
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=76.63 E-value=1.4 Score=39.92 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=19.4
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34555667877 566899999999763
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.60 E-value=1.2 Score=35.91 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.2
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.+.-+++.|++|||||+..-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999998543
No 334
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=76.57 E-value=0.95 Score=36.96 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.9
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.-++|.|++|||||+..-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999998543
No 335
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.45 E-value=1.3 Score=39.97 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.7
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666778888 566799999999764
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.45 E-value=1 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+.-+++.|++|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998543
No 337
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=76.43 E-value=1.5 Score=39.64 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=18.7
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4445667777 566899999999863
No 338
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.36 E-value=5.4 Score=42.88 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCCccEEEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEE
Q 014314 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (427)
+++-+++|+||+=.-+|. .....+.+.+....+++-+|++
T Consensus 570 ~~~~~IliLDE~tSaLD~-~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDA-ESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCT-TTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCH-HHHHHHHHHHHHHhCCCEEEEE
Confidence 456788999999888874 3455555555444444434444
No 339
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.34 E-value=1.7 Score=36.02 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|+|||+ ++-++..+.
T Consensus 34 ~Ge~~~iiG~NGsGKST--Llk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT--LLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36678999999999997 344444443
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.24 E-value=1 Score=39.26 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.2
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
.-++++|++|||||+..
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999754
No 341
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.24 E-value=1.7 Score=36.39 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.5
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhcc
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
.|.-+.|.||.|+|||+ ++-++..+
T Consensus 33 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS--LLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 36778999999999997 34444443
No 342
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.92 E-value=1.6 Score=40.08 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=20.2
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 6677788887 566799999999874
No 343
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.87 E-value=1.6 Score=39.43 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=25.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCc
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (427)
.+.-++|.|++|+|||..++..+......+. +++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeCC
Confidence 4667999999999999766544443332221 67777763
No 344
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.86 E-value=1.1 Score=36.80 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCCCchHHHHhHhhhhcC----CeEEEEecCCCCcchHH
Q 014314 55 PELLRAIVDSGFEHPSEVQHECIPQAILG----MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 55 ~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~----~~~li~~~tGsGKT~~~ 100 (427)
..+.+-|.-.|+. +..+ -..+..++.+ +.+++.||+|+|||..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3556666655543 3333 3334444443 35899999999999754
No 345
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=75.83 E-value=2.5 Score=40.47 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=25.0
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccCC-CCCCeEEEEEeCc
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHT 123 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~ 123 (427)
.+++|.|.||||||.+.-..++..+.. .+...+.+++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 469999999999997644434433322 3344455555554
No 346
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=75.78 E-value=2.4 Score=29.55 Aligned_cols=35 Identities=6% Similarity=0.161 Sum_probs=30.9
Q ss_pred CeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
.+++++|.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999999777888764
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=75.78 E-value=1.3 Score=39.04 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.6
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+.-+.+.||+|+|||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456888999999999743
No 348
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=75.77 E-value=1.5 Score=39.20 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=18.7
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4455667777 566799999999763
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.73 E-value=1.1 Score=36.85 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=16.7
Q ss_pred hhhcCCeEEEEecCCCCcchHH
Q 014314 79 QAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 79 ~~~~~~~~li~~~tGsGKT~~~ 100 (427)
.+..+.-+.|.|++|||||+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3344556889999999999753
No 350
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.73 E-value=1.2 Score=40.60 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=13.9
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36889999999997544
No 351
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=75.71 E-value=1.8 Score=37.33 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=19.3
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 44 ~Ge~~~i~G~nGsGKST--Llk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST--VAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36778999999999997 444555444
No 352
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=75.71 E-value=2.1 Score=36.63 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCCchHH-HHhHhhhhcCC-----eEEEEecCCCCcchHHH
Q 014314 55 PELLRAIVDSGFEHPSEVQ-HECIPQAILGM-----DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 55 ~~l~~~l~~~~~~~~~~~Q-~~~i~~~~~~~-----~~li~~~tGsGKT~~~~ 101 (427)
..+.+-|+..|+. +++ ..++..++.++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677888878874 444 23345555543 48999999999997654
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.62 E-value=1.2 Score=39.27 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=19.3
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||+|||||+. +-++..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 377799999999999973 44554443
No 354
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.48 E-value=1.8 Score=36.98 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 32 ~Ge~~~liG~nGsGKST--Llk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST--LINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 36678899999999997 444555443
No 355
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.36 E-value=1.1 Score=38.76 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=30.8
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCchHHHHhHhhhh--cCCeEEEEecCCCCcchH
Q 014314 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 44 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~li~~~tGsGKT~~ 99 (427)
....|+++...+.+.+.+...-.. + . ...++..+- -.+.+++.||+|+|||+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~-~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-L-K-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-H-H-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-H-H-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 455688887777777666543110 0 0 012222221 134599999999999974
No 356
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.30 E-value=1.2 Score=37.35 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=12.3
Q ss_pred hcCCeEEEEecCCCCcchHH
Q 014314 81 ILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 81 ~~~~~~li~~~tGsGKT~~~ 100 (427)
..|.-+.|.||+|||||+..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999753
No 357
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=75.27 E-value=0.91 Score=36.58 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.4
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
-+++.||+|+|||+..
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999753
No 358
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.23 E-value=1.9 Score=36.44 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=19.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|+|||+ ++-++..+.
T Consensus 31 ~Ge~~~l~G~nGsGKST--Ll~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT--TLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 36678899999999997 444555443
No 359
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=75.23 E-value=1.4 Score=35.96 Aligned_cols=22 Identities=23% Similarity=0.213 Sum_probs=16.3
Q ss_pred eEEEEecCCCCcchHHHHHhhh
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQ 106 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~ 106 (427)
-.++.|++|||||+.+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999865543333
No 360
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=75.22 E-value=1.9 Score=36.98 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.5
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|+|||+ ++-++..+.
T Consensus 32 Ge~~~liG~nGsGKST--Llk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKST--FLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 6668899999999997 444555443
No 361
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.22 E-value=1.9 Score=36.81 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 40 ~Gei~~l~G~NGsGKST--Llk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT--TLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36678999999999997 444555443
No 362
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=75.22 E-value=1.4 Score=39.95 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=19.1
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34445666777 666899999999764
No 363
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=75.18 E-value=2.3 Score=37.64 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.6
Q ss_pred EEEEecCCCCcchH
Q 014314 86 VICQAKSGMGKTAV 99 (427)
Q Consensus 86 ~li~~~tGsGKT~~ 99 (427)
++|.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999975
No 364
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.10 E-value=1.3 Score=38.95 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.0
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999997543
No 365
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.07 E-value=1.2 Score=40.64 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.8
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 366
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=75.03 E-value=1.7 Score=39.47 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=19.0
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4455667877 566899999999764
No 367
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=75.00 E-value=1.9 Score=36.93 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=18.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|+|||+ ++-++..+.
T Consensus 50 Gei~~liG~NGsGKST--Llk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKST--FLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHH--HHHHHHcCC
Confidence 6668899999999997 444555444
No 368
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=74.98 E-value=1.3 Score=40.22 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=17.2
Q ss_pred hhhhcCCe--EEEEecCCCCcchHH
Q 014314 78 PQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 78 ~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..++.|.+ ++.-|.||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34556777 566899999999764
No 369
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.90 E-value=1.3 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCeEEEEecCCCCcchH
Q 014314 83 GMDVICQAKSGMGKTAV 99 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~ 99 (427)
|.-+.|.||+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55588999999999964
No 370
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.89 E-value=1.2 Score=35.91 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-+++.|++|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997543
No 371
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.66 E-value=1.1 Score=36.00 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.7
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.-+++.|++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998643
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.58 E-value=1.1 Score=36.86 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 373
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.50 E-value=1.6 Score=35.90 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=20.8
Q ss_pred chHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
++.++.. ..+..+.-+++.|++|||||+..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 23445667899999999999754
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.32 E-value=1.4 Score=36.74 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
...+++.|++|||||+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.31 E-value=1.8 Score=36.81 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=17.0
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.+..++|.|++|||||+..-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48889999999999998543
No 376
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=74.29 E-value=2.2 Score=34.07 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=24.6
Q ss_pred EEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHHHH
Q 014314 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (427)
++|.|++|||||.-+.-.+ .. + .+++++.+....-..+.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la-~~-----~-~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-GD-----A-PQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-CS-----C-SSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-hc-----C-CCeEEEecCCCCCHHHHHHHHHH
Confidence 5899999999996543222 11 1 25788887654444444444443
No 377
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.27 E-value=1.3 Score=36.16 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+..+++.|++|||||+..-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998643
No 378
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=74.22 E-value=2.1 Score=36.82 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++..+.
T Consensus 32 ~Ge~~~liG~nGsGKST--Ll~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST--LLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhCCC
Confidence 36678899999999997 444555444
No 379
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.22 E-value=1.5 Score=39.52 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=29.8
Q ss_pred CCCCCCCCCCHHHHHHHHhCC---CCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHHH
Q 014314 45 SSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~ 101 (427)
...|+++.-...+++.|...- +..+..++. .....+.+++.||+|+|||+.+-
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHH
Confidence 456777766666666665431 011111110 01124569999999999997643
No 380
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.21 E-value=5.2 Score=37.31 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=51.6
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEc--------CcchHH---HHHHHhcCCCcEEEechHHHHHHHhcC
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG--------GVNIKI---HKDLLKNECPQIVVGTPGRILALARDK 184 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~---~~~~~~~~~~~I~v~T~~~l~~~~~~~ 184 (427)
++||.++++..+..+.+.++.. ++.+..++| +.+... ..+.+.++...|+|+|.- + ..
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~-~-----~~ 431 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV-G-----EE 431 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG-G-----GG
T ss_pred eEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCc-c-----cc
Confidence 8999999999998888877765 678888888 544332 334455566799999942 2 34
Q ss_pred CCCCCCccEEEEcCCc
Q 014314 185 DLSLKNVRHFILDECD 200 (427)
Q Consensus 185 ~~~~~~~~~iVvDEah 200 (427)
.+++..+++||+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 5678888888865443
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=73.90 E-value=1.3 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.3
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.++|.|++|||||+..-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999997643
No 382
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.90 E-value=0.72 Score=39.64 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999754
No 383
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.78 E-value=1.5 Score=41.30 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=29.8
Q ss_pred CCCCCCCCCCHHHHHHHHhC--CCCCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 45 SSGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 45 ~~~~~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
...|+++.-....++.+... .+..+..++... +...+.+++.||+|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 34677777666666666543 011121111110 112356999999999999754
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.62 E-value=1.3 Score=36.64 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.61 E-value=1.4 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+..+++.|++|||||+..-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 386
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=73.60 E-value=1.7 Score=40.29 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=18.8
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4455567777 666899999999764
No 387
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.52 E-value=2 Score=35.76 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=17.9
Q ss_pred eEEEEecCCCCcchHHHHHhhhcc
Q 014314 85 DVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
++++.++.|+|||...+-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999987655444443
No 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.43 E-value=2.2 Score=37.01 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=18.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|+|||+ ++-++..+.
T Consensus 47 Ge~~~liG~NGsGKST--Llk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTT--LLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCEEEEECCCCCcHHH--HHHHHhCCC
Confidence 6678899999999997 444555443
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=73.31 E-value=1.3 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.2
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-+++.|++|||||++.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 390
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=73.30 E-value=1.7 Score=39.33 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.6
Q ss_pred hHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 76 ~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666777877 566799999999764
No 391
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.28 E-value=1.9 Score=39.59 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.4
Q ss_pred HhHhhhhcCCe--EEEEecCCCCcchHH
Q 014314 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 75 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 100 (427)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46677778887 566799999999864
No 392
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.24 E-value=1.6 Score=35.50 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.7
Q ss_pred cCCeEEEEecCCCCcchHH
Q 014314 82 LGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~ 100 (427)
.+.-+.+.|++|||||+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4666889999999999753
No 393
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=73.23 E-value=1.6 Score=36.78 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.6
Q ss_pred hhcCCeEEEEecCCCCcchHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~ 101 (427)
+..|.-+.|.||+|+|||+...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4457779999999999997543
No 394
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.19 E-value=1.7 Score=39.19 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 395
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.15 E-value=2.1 Score=38.78 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=25.4
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCch
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (427)
.|.-++|.|++|+|||...+..+......+. +++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECCC
Confidence 3566899999999999765443333322221 677777543
No 396
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=73.13 E-value=11 Score=37.28 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=54.4
Q ss_pred EEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH---HHHHHHhc--CCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 118 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK---IHKDLLKN--ECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 118 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~--~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
+|+++++.-+..+++.+... +..+..++|+.... .....+.+ +..+|+|||.- -...+++ +++
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi------~e~GlDi-~v~ 391 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA------IGMGLNL-SIR 391 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG------GGSSCCC-CBS
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH------HHCCcCc-Ccc
Confidence 66688888888888777763 67899999998776 45556666 66799999962 2346678 899
Q ss_pred EEEEcCCccc
Q 014314 193 HFILDECDKM 202 (427)
Q Consensus 193 ~iVvDEah~~ 202 (427)
+||.-.....
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998777643
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.06 E-value=1.5 Score=34.92 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=11.5
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+.-+++.|+.|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4468899999999998644
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=73.03 E-value=1.5 Score=35.08 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.3
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||++.-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999998643
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=72.77 E-value=1.4 Score=34.00 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=13.1
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999975
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.69 E-value=1.4 Score=34.79 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.2
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||++.-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 401
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=72.67 E-value=6.7 Score=29.11 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.7
Q ss_pred CC-CeEEEEE-CCchhHHHHHHHHHhCCCCeEEecCCCCHH
Q 014314 287 DF-NQVVIFV-KSVSRAAELNKLLVECNFPSICIHSGMSQE 325 (427)
Q Consensus 287 ~~-~~~ivf~-~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~ 325 (427)
+. .+++|+| .+-..+...+..|+..|+++..+.|++..-
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 44 7899999 577888899999999999888999986643
No 402
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.65 E-value=1.5 Score=36.01 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.1
Q ss_pred CCeEEEEecCCCCcchH
Q 014314 83 GMDVICQAKSGMGKTAV 99 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~ 99 (427)
+.-+.|.||+|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578999999999974
No 403
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=72.63 E-value=5 Score=27.12 Aligned_cols=36 Identities=11% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCe-EEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPS-ICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~-~~l~~~~~ 323 (427)
+..+++++|.+-..+...+..|++.|+.. ..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45789999999999999999999999864 444 6644
No 404
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.54 E-value=1.5 Score=40.16 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
.+.+++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 405
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.51 E-value=5.9 Score=41.51 Aligned_cols=74 Identities=5% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhC----CC----CeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-ccccCC-CCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVEC----NF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGID-IER 356 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~----~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gld-~~~ 356 (427)
.+.++||.++++.-+.++++.++.. ++ .+..++|+.+...+....+.+.+ .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4578999999999999988887653 56 78999999999888777777776 899999952 222122 456
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777763
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=72.44 E-value=2.8 Score=35.81 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
.|.-+.|.||.|||||+ ++-++..+..
T Consensus 45 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST--IAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhccCC
Confidence 36779999999999997 4445554443
No 407
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.38 E-value=1.5 Score=34.92 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=14.9
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
|..+++.|+.|||||++.
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556889999999999753
No 408
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.19 E-value=1.7 Score=36.01 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=15.5
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
.+-+++.||+||||++.+-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 44578899999999986543
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=72.13 E-value=1.4 Score=35.98 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=13.8
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+.|.|+.|||||+..-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998543
No 410
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=71.98 E-value=1.8 Score=35.54 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.3
Q ss_pred eEEEEecCCCCcchHHHH
Q 014314 85 DVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~~ 102 (427)
.+++.||+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986543
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.93 E-value=1.5 Score=36.38 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=15.0
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
..+++.|++|||||+..-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998643
No 412
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=71.79 E-value=1.5 Score=36.51 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.6
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
..+.|.|++|||||+..-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999997543
No 413
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=71.73 E-value=2.1 Score=37.63 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
++-+++.|++|+|||+....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 34578899999999975443
No 414
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.64 E-value=1.8 Score=35.52 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.3
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.+.-+++.|+.|||||+..-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45668999999999998643
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.52 E-value=1.5 Score=35.69 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.8
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
-+++.|++|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 416
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.36 E-value=1.7 Score=36.04 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=16.3
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.|.-+.|.||+|+|||+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46668999999999997543
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.35 E-value=1.6 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.6
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
.+.|.|++|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999754
No 418
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.18 E-value=1.5 Score=35.56 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.5
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
.+++.|++|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3689999999999754
No 419
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.07 E-value=2.1 Score=41.64 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=13.8
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 799999999999974
No 420
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=70.98 E-value=1.3 Score=39.72 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999754
No 421
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=70.92 E-value=1.6 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+.-+++.|+.|||||+..-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568899999999998643
No 422
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=70.91 E-value=9.1 Score=38.51 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=54.4
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhc------cCCCceEEEEEcCcchHHHHHHHh--------cCCCcEEEechHHHHHHH
Q 014314 116 TALVLCHTRELAYQICHEFERFST------YLPDIKVAVFYGGVNIKIHKDLLK--------NECPQIVVGTPGRILALA 181 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~I~v~T~~~l~~~~ 181 (427)
++||.+|++.-+..+++.+..... ...++.+..++|+.....+...+. ++...|+|+|.- +
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i--a--- 379 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI--A--- 379 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH--H---
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH--H---
Confidence 899999999999999988875321 124788999999988776655443 345689999953 2
Q ss_pred hcCCCCCCCccEEEE
Q 014314 182 RDKDLSLKNVRHFIL 196 (427)
Q Consensus 182 ~~~~~~~~~~~~iVv 196 (427)
...+++.++++||-
T Consensus 380 -e~GidIp~v~~VId 393 (773)
T 2xau_A 380 -ETSLTIDGIVYVVD 393 (773)
T ss_dssp -HHTCCCTTEEEEEE
T ss_pred -HhCcCcCCeEEEEe
Confidence 13467788887664
No 423
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=70.88 E-value=2.6 Score=35.75 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|+|||+ ++-++..+.
T Consensus 25 ~Ge~~~liG~NGsGKST--Llk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST--LLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhCCC
Confidence 36678999999999997 444555444
No 424
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.86 E-value=1.6 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||++.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 425
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=70.69 E-value=1.7 Score=34.65 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.2
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
-.+|.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 578999999999974
No 426
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=70.63 E-value=3.4 Score=29.53 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCC-eEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~l~~~~~ 323 (427)
+..+++++|.+-..+...+..|+..|+. +..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3468999999999999999999999995 777888754
No 427
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.59 E-value=1.7 Score=34.90 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+..+++.|++|||||+..-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997543
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=70.50 E-value=1.7 Score=35.82 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 429
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=70.48 E-value=2.9 Score=37.66 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=18.4
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|||||+ ++-++.-+.
T Consensus 30 Ge~~~llGpsGsGKST--LLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTT--LLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHH--HHHHHHTSS
T ss_pred CCEEEEECCCCchHHH--HHHHHhcCC
Confidence 6668899999999997 444555443
No 430
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=70.45 E-value=1.6 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.5
Q ss_pred EEEEecCCCCcchHHH
Q 014314 86 VICQAKSGMGKTAVFV 101 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~ 101 (427)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 431
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=70.34 E-value=2.3 Score=33.93 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=12.9
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999974
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=70.21 E-value=2 Score=35.22 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.3
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.+.-+++.|+.|||||+..-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668999999999998643
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.12 E-value=1.6 Score=39.52 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=13.7
Q ss_pred eEEEEecCCCCcchHH
Q 014314 85 DVICQAKSGMGKTAVF 100 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~ 100 (427)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999754
No 434
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.91 E-value=1.7 Score=35.03 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.5
Q ss_pred EEEEecCCCCcchHHH
Q 014314 86 VICQAKSGMGKTAVFV 101 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~ 101 (427)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 435
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.89 E-value=2.1 Score=35.43 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+..+++.|++|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998643
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=69.85 E-value=2.1 Score=36.15 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
...+++.|+.|||||+..-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4468999999999998643
No 437
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=69.81 E-value=2.8 Score=35.30 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=17.2
Q ss_pred CeEEEEecCCCCcchHHHHHhhhccC
Q 014314 84 MDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.-+.|.||.|||||+ ++-++..+.
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHTSS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCCC
Confidence 457789999999997 444555443
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=69.69 E-value=2.4 Score=37.22 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.6
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.|.-+.|.||+|+|||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 377799999999999974
No 439
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.67 E-value=2.1 Score=38.17 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.6
Q ss_pred CeEEEEecCCCCcchHH
Q 014314 84 MDVICQAKSGMGKTAVF 100 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~ 100 (427)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999753
No 440
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=69.60 E-value=5.8 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCC-CeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNF-PSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~l~~~~~ 323 (427)
+..+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 347899999998889999999999999 4888889875
No 441
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=69.59 E-value=5.4 Score=39.40 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=48.6
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iV 195 (427)
++||+||++.-+..+++.++.. ++++..++|. ........+.++..+|+|+|.- -...+++. +++||
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTdv------~e~GIDip-v~~VI 478 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTDI------SEMGANFG-ASRVI 478 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECGG------GGTTCCCC-CSEEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECch------hhcceeeC-CcEEE
Confidence 7999999999999888777654 6789999985 3333344556677899999952 12455677 77766
No 442
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=69.50 E-value=15 Score=36.98 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=53.0
Q ss_pred HHHhcCCCeEEEEECCchhHHHHHHHHH----hCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c--------
Q 014314 282 LLDALDFNQVVIFVKSVSRAAELNKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-------- 348 (427)
Q Consensus 282 ~l~~~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-------- 348 (427)
++..+.+..++|.++++.-|...++.+. ..|+++.++.|+++...|.... ..+|+++|+- +
T Consensus 118 ~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~ 191 (844)
T 1tf5_A 118 YLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDN 191 (844)
T ss_dssp HHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHh
Confidence 3345567789999999998887766554 4599999999999987665432 3689999951 2
Q ss_pred ----cccCCCCCCCEEE
Q 014314 349 ----GRGIDIERVNIVI 361 (427)
Q Consensus 349 ----~~Gld~~~~~~vi 361 (427)
...+++..++++|
T Consensus 192 m~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 192 MVLYKEQMVQRPLHFAV 208 (844)
T ss_dssp TCSSGGGCCCCCCCEEE
T ss_pred hhcchhhhcccCCCEEE
Confidence 1235566777766
No 443
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.43 E-value=40 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+.+.|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999997543
No 444
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=69.25 E-value=2.5 Score=38.78 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=45.6
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~ 192 (427)
++||.++++.-+..+++.+... ++.+..++|+.....+. +.+.++..+|+|+|.- -...+++.+++
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~v~ 350 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LARGIDVQQVS 350 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC--CCGGGCS
T ss_pred cEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cccCCCccCCC
Confidence 7899999999998888777653 67888899987665443 3445566789999952 23356677788
Q ss_pred EEEEc
Q 014314 193 HFILD 197 (427)
Q Consensus 193 ~iVvD 197 (427)
+||.-
T Consensus 351 ~Vi~~ 355 (414)
T 3eiq_A 351 LVINY 355 (414)
T ss_dssp CEEES
T ss_pred EEEEe
Confidence 87753
No 445
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.06 E-value=1.8 Score=37.03 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.6
Q ss_pred CeEEEEecCCCCcchHHH
Q 014314 84 MDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~ 101 (427)
.-++++|++|||||+..-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 358899999999997543
No 446
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.98 E-value=5.2 Score=38.98 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.0
Q ss_pred hhhcCCeEEEEecCCCCcchHH
Q 014314 79 QAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 79 ~~~~~~~~li~~~tGsGKT~~~ 100 (427)
.+..+..+++.||+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3445788999999999999754
No 447
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.88 E-value=2.9 Score=39.37 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=15.9
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 448
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.67 E-value=3.5 Score=39.30 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=26.2
Q ss_pred CCccEEEEcCCcccccC-CCcHHHHHHHHHhCCCCceEEEEEccCC
Q 014314 189 KNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (427)
Q Consensus 189 ~~~~~iVvDEah~~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (427)
....+||+||+|.+... ......+..++.. ....+|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 34568999999988652 2223445555544 2345777777643
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=68.62 E-value=2.6 Score=33.43 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.4
Q ss_pred cCCeEEEEecCCCCcchHHH
Q 014314 82 LGMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~ 101 (427)
.|+-+++.|+.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 36679999999999997644
No 450
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.57 E-value=5.8 Score=35.04 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=12.9
Q ss_pred EEEEecCCCCcchHH
Q 014314 86 VICQAKSGMGKTAVF 100 (427)
Q Consensus 86 ~li~~~tGsGKT~~~ 100 (427)
+.|.||+|||||+..
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999753
No 451
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.42 E-value=2.7 Score=37.24 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCCcchHHHH
Q 014314 83 GMDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~ 102 (427)
++-+++.+++|+|||+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44578899999999976443
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.36 E-value=1.9 Score=35.83 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.0
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 453
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=68.34 E-value=2.5 Score=33.35 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=12.7
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
-+.+.|+.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 454
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=68.26 E-value=3.2 Score=37.30 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++.-+.
T Consensus 40 ~Ge~~~llGpnGsGKST--LLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTT--ILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhCCC
Confidence 36678899999999997 444555443
No 455
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=68.20 E-value=3.3 Score=37.31 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=18.6
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|||||+ ++-++.-+.
T Consensus 29 Ge~~~llGpnGsGKST--LLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTT--TLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHHTSS
T ss_pred CCEEEEEcCCCchHHH--HHHHHHCCC
Confidence 6668899999999997 455555443
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.17 E-value=2 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.6
Q ss_pred EEEEecCCCCcchHHH
Q 014314 86 VICQAKSGMGKTAVFV 101 (427)
Q Consensus 86 ~li~~~tGsGKT~~~~ 101 (427)
+.|.|++|||||++.-
T Consensus 15 IgltG~~GSGKSTva~ 30 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999998643
No 457
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.06 E-value=2 Score=39.08 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=13.1
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
-.+|.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999965
No 458
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=68.05 E-value=5.9 Score=36.95 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=49.0
Q ss_pred EEEEEeCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014314 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (427)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~iV 195 (427)
++||.+|++.-+.++++.++.. ++.+..+++.... .....+.++..+|+|+|.- -...+++.. ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~v------~~~GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTDI------SEMGANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECGG------GGSSCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHH-HHHHhhccCCceEEEECCH------HHhCcCCCC-CEEE
Confidence 7999999999999888877653 6788888886553 3344556677899999952 234567777 6666
No 459
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=68.01 E-value=4.3 Score=34.73 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.4
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|+|||+ ++-++..+.
T Consensus 30 Ge~~~i~G~NGsGKST--Llk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTT--LLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEEECCCCCCHHH--HHHHHhCCC
Confidence 6678899999999997 344444443
No 460
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=67.96 E-value=2.8 Score=31.03 Aligned_cols=37 Identities=8% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCCeEEEEECCchh--HHHHHHHHHhCCCCeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSR--AAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~--~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+..+++|+|.+-.. +...+..|+..|+.+..+.|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 34689999999877 88999999999999778888754
No 461
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=67.95 E-value=3.3 Score=37.56 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.0
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhcc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
|.-+.|.||.|||||+ ++-++.-+
T Consensus 29 Ge~~~llGpsGsGKST--LLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKST--LLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHHTS
T ss_pred CCEEEEEcCCCchHHH--HHHHHHcC
Confidence 6668899999999997 44455444
No 462
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=67.94 E-value=10 Score=38.35 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c----ccc-C-CCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GRG-I-DIER 356 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~----~~G-l-d~~~ 356 (427)
+.++||.++++..+..+.+.+++. ++++..+||+.+...+...+. +..+|+|+|.- + ..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999998888877664 899999999987655432221 25789999942 1 111 2 4556
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=67.91 E-value=3.9 Score=43.99 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
.|+.+-|+|+||||||+. +-++..+..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL--~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTV--VALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSH--HHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHH--HHHHhcCcc
Confidence 478899999999999974 444554443
No 464
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.88 E-value=2.8 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=32.0
Q ss_pred hhcCCeEEEEecCCCCcchHHHHHhhhccCCCCCCeEEEEEeCchHHHHHHHHHHH
Q 014314 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (427)
Q Consensus 80 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (427)
+..|.-++|.|++|+|||...+-.+.......+ .+++++.-- .-..|+..++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~E-~s~~~l~~r~~ 291 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAMLE-ESVEETAEDLI 291 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEESS-SCHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEecc-CCHHHHHHHHH
Confidence 344667999999999999765544444443212 256777643 23445555443
No 465
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.81 E-value=2.8 Score=35.02 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCcchHHH
Q 014314 83 GMDVICQAKSGMGKTAVFV 101 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~ 101 (427)
+..+++.|++|||||+..-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 466
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=67.77 E-value=6.1 Score=28.36 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
+..+++|+|.+-..+...+..|+..|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4578999999999999999999999987677788854
No 467
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=67.73 E-value=14 Score=37.05 Aligned_cols=57 Identities=16% Similarity=0.012 Sum_probs=43.7
Q ss_pred HhcCCCeEEEEECCchhHHHHHHHHH----hCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeC
Q 014314 284 DALDFNQVVIFVKSVSRAAELNKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (427)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 346 (427)
....+.+++|.++|+.-|...++.+. ..|+++.++.|+++...|.... ..+|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 44556789999999998877766554 4589999999999976554432 368999996
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.63 E-value=3.4 Score=32.80 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.9
Q ss_pred eEEEEecCCCCcchH
Q 014314 85 DVICQAKSGMGKTAV 99 (427)
Q Consensus 85 ~~li~~~tGsGKT~~ 99 (427)
-+++.|+.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999964
No 469
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=67.50 E-value=8.3 Score=36.83 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=47.0
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c----ccc-C-CCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GRG-I-DIER 356 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~----~~G-l-d~~~ 356 (427)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+...+...+. ...+|+|+|.- + ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888887764 899999999987655432221 13679999942 2 122 3 5667
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 470
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=67.49 E-value=2.3 Score=35.87 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+.-++|.|+.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 471
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=67.37 E-value=8.7 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
.+++++.||+|+|||+..
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999754
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=67.27 E-value=2.2 Score=35.86 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.2
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhcc
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
.|.-+.|.||.|||||+ ++-++..+
T Consensus 30 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS--LLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTC
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 36778999999999997 34444433
No 473
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=67.24 E-value=2.9 Score=33.75 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCCccEEEEcCCccccc-CCCcHHHHHHHHHhCCCCceEEEEEccCC
Q 014314 188 LKNVRHFILDECDKMLE-SLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (427)
Q Consensus 188 ~~~~~~iVvDEah~~~~-~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (427)
..+.+++|+||+..+.. ...+...+.+++.. ...+++-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 45678999999866632 13456666666653 223555567764
No 474
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=67.21 E-value=4.4 Score=30.60 Aligned_cols=37 Identities=35% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCC-CeEEecCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNF-PSICIHSGMS 323 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~l~~~~~ 323 (427)
+..+++|+|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 457899999999999999999999999 4778889854
No 475
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.15 E-value=3.5 Score=37.14 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=18.0
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhcc
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQT 108 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~ 108 (427)
|.-+.|.||.|||||+ ++-++.-+
T Consensus 29 Ge~~~llGpnGsGKST--LLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKST--LLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHHTS
T ss_pred CCEEEEECCCCchHHH--HHHHHhcC
Confidence 6668899999999997 44455444
No 476
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.15 E-value=6.5 Score=37.53 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=48.9
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-cc----cc-C-CCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VG----RG-I-DIER 356 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~----~G-l-d~~~ 356 (427)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+...+...+. +..+|+|+|.- +. .+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888887777664 899999999986554322221 14679999942 21 12 2 4556
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777764
No 477
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.59 E-value=1.7 Score=37.06 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=14.7
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+++.|++|||||+..
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 478
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=66.48 E-value=2.8 Score=33.92 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
.+.|.|++|||||++.-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 479
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=66.47 E-value=3.7 Score=37.17 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=18.5
Q ss_pred CCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
|.-+.|.||.|||||+ ++-++.-+.
T Consensus 37 Ge~~~llGpnGsGKST--LLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTT--TLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHHTSS
T ss_pred CCEEEEECCCCChHHH--HHHHHHcCC
Confidence 6668899999999997 444555443
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.37 E-value=3.9 Score=36.73 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=15.1
Q ss_pred CeEEEEecCCCCcchHHHH
Q 014314 84 MDVICQAKSGMGKTAVFVL 102 (427)
Q Consensus 84 ~~~li~~~tGsGKT~~~~~ 102 (427)
.-+.|.||+|+|||.....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3488999999999975444
No 481
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.32 E-value=3.7 Score=33.82 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=47.7
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC--------CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----ccc-cCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VGR-GID 353 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-Gld 353 (427)
+.++||.++++..+..+++.+++. +..+..++|+.+..... +.+ .+..+|+|+|.. +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999888877653 57788888886544321 112 245789999942 222 345
Q ss_pred CCCCCEEEE
Q 014314 354 IERVNIVIN 362 (427)
Q Consensus 354 ~~~~~~vi~ 362 (427)
+..++++|.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666777663
No 482
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=66.16 E-value=3.8 Score=36.91 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=19.8
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccCC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 110 (427)
.|.-+.|.||.|||||+ ++-++..+..
T Consensus 53 ~Gei~~IiGpnGaGKST--Llr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKST--LIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHH--HHHHHhcCCC
Confidence 36678999999999997 4555555443
No 483
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.10 E-value=3.2 Score=36.37 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.8
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
|.-+.+.||+|+|||+..
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 555889999999999743
No 484
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.92 E-value=3.8 Score=35.82 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=46.7
Q ss_pred CeEEEEECCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc------c-ccCCCCC
Q 014314 289 NQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV------G-RGIDIER 356 (427)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~-~Gld~~~ 356 (427)
.++||.++++.-+.++++.++.. ++.+..++|+.....+ .....+|+|+|.-- . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 47999999999999988887653 4667777776543221 13456899999532 1 3567778
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
++++|.
T Consensus 236 l~~lVl 241 (300)
T 3fmo_B 236 IKVFVL 241 (300)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 485
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=65.88 E-value=4.1 Score=29.12 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=32.0
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCC-eEEecCCCCH
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQ 324 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 324 (427)
+..+++|+|.+-..+...+..|+..|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4578999999988999999999999995 7788888653
No 486
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=65.74 E-value=20 Score=36.25 Aligned_cols=76 Identities=21% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHhcCCCeEEEEECCchhHHHHHHHH----HhCCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-c-----c
Q 014314 280 NDLLDALDFNQVVIFVKSVSRAAELNKLL----VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----G 349 (427)
Q Consensus 280 ~~~l~~~~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~ 349 (427)
..++..+.+.+++|.+++..-|...++.+ +..|+.+.++.|+++...|.... ..+|+++|+. + .
T Consensus 144 P~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLr 217 (922)
T 1nkt_A 144 PAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLR 217 (922)
T ss_dssp HHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHH
Confidence 33445566788999999999887766554 44699999999999987665443 3689999962 1 1
Q ss_pred -------ccCCCCCCCEEE
Q 014314 350 -------RGIDIERVNIVI 361 (427)
Q Consensus 350 -------~Gld~~~~~~vi 361 (427)
..+++..++++|
T Consensus 218 D~m~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 218 DNMAHSLDDLVQRGHHYAI 236 (922)
T ss_dssp HTTCSSGGGCCCCCCCEEE
T ss_pred hhhhccHhhhccCCCCEEE
Confidence 135566677766
No 487
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=65.73 E-value=2.3 Score=35.06 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.1
Q ss_pred eEEEEecCCCCcchHHH
Q 014314 85 DVICQAKSGMGKTAVFV 101 (427)
Q Consensus 85 ~~li~~~tGsGKT~~~~ 101 (427)
-+.|.|+.|||||++.-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 488
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=65.52 E-value=4.5 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCCeEEEEECCchhHHHHHHHHHhCCCC-eEEecCCCCH
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQ 324 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 324 (427)
+..+++|+|.+-..+...+..|+..|+. +..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3578999999989999999999999985 7788898653
No 489
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=65.48 E-value=2.5 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=14.4
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+.-+.|.|+.|||||+..
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344888999999999753
No 490
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=65.34 E-value=4.3 Score=30.96 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=31.0
Q ss_pred CCeEEEEECCc--hhHHHHHHHHHhCCCCeEEecCCCC
Q 014314 288 FNQVVIFVKSV--SRAAELNKLLVECNFPSICIHSGMS 323 (427)
Q Consensus 288 ~~~~ivf~~~~--~~~~~l~~~L~~~~~~~~~l~~~~~ 323 (427)
..+++|+|.+- ..+...+..|+..|+++..+.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 46899999987 5888999999999999888989854
No 491
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=65.22 E-value=5.4 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=23.3
Q ss_pred CchHHHHhHhhhhc---CCeEEEEecCCCCcchHH
Q 014314 69 PSEVQHECIPQAIL---GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 69 ~~~~Q~~~i~~~~~---~~~~li~~~tGsGKT~~~ 100 (427)
+-..-..+|..++. |+.+.|.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 33444556655554 888999999999999754
No 492
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=65.18 E-value=4 Score=37.01 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=18.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|||||+ ++-++.-+.
T Consensus 28 ~Ge~~~llGpnGsGKST--LLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTT--TLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHH--HHHHHHcCC
Confidence 36668899999999997 444554443
No 493
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=65.01 E-value=2.5 Score=32.97 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.8
Q ss_pred cCCeEEEEecCCCCcchH
Q 014314 82 LGMDVICQAKSGMGKTAV 99 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~ 99 (427)
.|.-+.+.||.|+|||+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355688999999999963
No 494
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=64.95 E-value=3.4 Score=35.18 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=18.9
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|.-+.|.||.|+|||+ ++-++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKST--Ll~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST--LLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 36678899999999997 444554443
No 495
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=64.92 E-value=3.4 Score=35.08 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCcchHH
Q 014314 83 GMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 83 ~~~~li~~~tGsGKT~~~ 100 (427)
+..+.|.||+|||||+..
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556899999999999753
No 496
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=64.88 E-value=4.9 Score=39.01 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=19.2
Q ss_pred cCCeEEEEecCCCCcchHHHHHhhhccC
Q 014314 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (427)
Q Consensus 82 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 109 (427)
.|+-+.+.||+|||||+. +-++..+.
T Consensus 368 ~G~~~~ivG~sGsGKSTl--l~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTI--ANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 477899999999999973 44444443
No 497
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=64.75 E-value=14 Score=33.22 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=50.6
Q ss_pred CCCeEEEEECCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCCc------cccCCCCC
Q 014314 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV------GRGIDIER 356 (427)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~~Gld~~~ 356 (427)
.+.++||.++++.-+..+++.+.. .+..+..++|+.+.......+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999988887765 3688889999988766554433 45799999421 12345566
Q ss_pred CCEEEE
Q 014314 357 VNIVIN 362 (427)
Q Consensus 357 ~~~vi~ 362 (427)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777663
No 498
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.60 E-value=4.4 Score=34.00 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCeEEEEECCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCCcEEEEeCC-----c---cccCCCC
Q 014314 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----V---GRGIDIE 355 (427)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~---~~Gld~~ 355 (427)
+.++||.++++.-+..+++.+++. ++.+..++|+..... .......+..+|+|+|.- + ...+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 357999999999999998888764 566666665422111 112223456789999942 1 1246788
Q ss_pred CCCEEEE
Q 014314 356 RVNIVIN 362 (427)
Q Consensus 356 ~~~~vi~ 362 (427)
+++++|.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888774
No 499
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=64.53 E-value=2 Score=43.46 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=32.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHhCC-C--CCCchHHHHhHhhhhcCCeEEEEecCCCCcchHH
Q 014314 42 GIHSSGFRDFLLKPELLRAIVDSG-F--EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (427)
Q Consensus 42 ~~~~~~~~~~~l~~~l~~~l~~~~-~--~~~~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~ 100 (427)
......|++..-...+.+.+...- + ..+..+.. ..+..++.+++.||+|+|||+.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK---FGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC---CCCCCCCCCCCBCCTTSSHHHHH
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHh---cCCCCCceeEEECCCCCCHHHHH
Confidence 334456777766666777776542 1 11111110 01223667999999999999753
No 500
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=64.43 E-value=3.8 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.3
Q ss_pred cCCe--EEEEecCCCCcchHH
Q 014314 82 LGMD--VICQAKSGMGKTAVF 100 (427)
Q Consensus 82 ~~~~--~li~~~tGsGKT~~~ 100 (427)
.|.+ ++.-|.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3666 577899999999764
Done!