Query 014317
Match_columns 427
No_of_seqs 164 out of 1833
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 5E-18 1.1E-22 149.4 1.0 275 16-332 98-392 (419)
2 KOG4341 F-box protein containi 99.7 5.8E-18 1.3E-22 155.4 -0.8 345 17-400 73-442 (483)
3 PF08387 FBD: FBD; InterPro: 98.8 2.8E-09 6.1E-14 70.7 3.7 43 350-392 8-50 (51)
4 PF12937 F-box-like: F-box-lik 98.8 7.7E-09 1.7E-13 67.7 3.5 37 16-52 1-37 (47)
5 smart00579 FBD domain in FBox 98.7 5.2E-08 1.1E-12 70.3 6.3 69 352-421 1-71 (72)
6 PLN00113 leucine-rich repeat r 98.5 5.7E-08 1.2E-12 106.1 4.5 217 158-395 116-343 (968)
7 PLN03210 Resistant to P. syrin 98.5 1.5E-07 3.2E-12 103.8 5.3 86 152-239 626-714 (1153)
8 PLN00113 leucine-rich repeat r 98.4 3E-07 6.4E-12 100.5 5.8 220 157-395 137-367 (968)
9 PF00646 F-box: F-box domain; 98.4 1.6E-07 3.5E-12 61.8 1.4 38 15-52 2-39 (48)
10 PLN03210 Resistant to P. syrin 98.3 3.6E-07 7.8E-12 100.8 4.5 104 152-259 604-714 (1153)
11 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.2E-13 91.3 -6.8 204 160-392 185-395 (419)
12 KOG4341 F-box protein containi 98.3 1.4E-08 3E-13 94.4 -6.8 218 157-398 161-386 (483)
13 cd00116 LRR_RI Leucine-rich re 98.3 3.9E-07 8.5E-12 86.2 2.5 87 122-219 23-119 (319)
14 smart00256 FBOX A Receptor for 98.2 1.4E-06 3E-11 55.1 3.8 34 19-52 1-34 (41)
15 cd00116 LRR_RI Leucine-rich re 98.1 7.5E-07 1.6E-11 84.3 0.9 236 157-398 20-292 (319)
16 KOG4194 Membrane glycoprotein 98.1 7.4E-07 1.6E-11 86.4 0.2 225 155-398 216-481 (873)
17 KOG1909 Ran GTPase-activating 98.1 9.3E-07 2E-11 80.7 0.2 255 95-367 32-309 (382)
18 KOG4194 Membrane glycoprotein 97.9 2.4E-06 5.1E-11 83.0 0.8 172 157-338 122-328 (873)
19 KOG1909 Ran GTPase-activating 97.9 2.2E-06 4.8E-11 78.3 0.3 225 158-395 28-281 (382)
20 KOG3207 Beta-tubulin folding c 97.8 2.6E-06 5.6E-11 80.0 -1.5 196 123-337 122-336 (505)
21 KOG3665 ZYG-1-like serine/thre 97.3 5.9E-05 1.3E-09 77.9 0.5 213 161-392 61-283 (699)
22 PF14580 LRR_9: Leucine-rich r 97.2 7.1E-05 1.5E-09 63.6 -0.2 63 273-337 85-150 (175)
23 PF07723 LRR_2: Leucine Rich R 97.1 0.0008 1.7E-08 37.4 3.2 25 161-185 1-26 (26)
24 KOG3207 Beta-tubulin folding c 97.1 8.2E-05 1.8E-09 70.2 -1.4 62 158-219 195-257 (505)
25 KOG2982 Uncharacterized conser 96.9 0.0007 1.5E-08 61.0 3.4 216 158-381 69-307 (418)
26 KOG1259 Nischarin, modulator o 96.8 0.00013 2.9E-09 65.6 -2.0 214 153-379 207-450 (490)
27 KOG1947 Leucine rich repeat pr 96.8 0.00034 7.3E-09 70.1 0.4 40 13-52 42-81 (482)
28 KOG1947 Leucine rich repeat pr 96.8 0.00011 2.4E-09 73.6 -3.3 80 157-236 240-328 (482)
29 PF14580 LRR_9: Leucine-rich r 96.7 0.0014 2.9E-08 55.8 3.3 134 247-395 17-151 (175)
30 KOG0444 Cytoskeletal regulator 96.7 2.9E-05 6.2E-10 76.4 -7.7 122 208-338 245-373 (1255)
31 PRK15387 E3 ubiquitin-protein 96.7 0.0021 4.6E-08 67.2 5.3 127 160-306 242-369 (788)
32 PRK15370 E3 ubiquitin-protein 96.7 0.00096 2.1E-08 69.8 2.8 155 160-338 220-378 (754)
33 PRK15387 E3 ubiquitin-protein 96.5 0.0037 8E-08 65.4 5.5 13 160-172 262-274 (788)
34 KOG0444 Cytoskeletal regulator 96.3 3.9E-05 8.5E-10 75.4 -9.5 229 152-395 95-350 (1255)
35 KOG3665 ZYG-1-like serine/thre 96.3 0.001 2.3E-08 68.9 0.0 58 158-216 146-203 (699)
36 PRK15370 E3 ubiquitin-protein 96.1 0.0045 9.8E-08 64.9 3.7 155 160-338 199-357 (754)
37 PRK15386 type III secretion pr 95.6 0.016 3.4E-07 55.9 4.7 30 276-307 156-185 (426)
38 KOG1259 Nischarin, modulator o 95.2 0.026 5.7E-07 51.2 4.3 55 250-309 285-339 (490)
39 KOG0281 Beta-TrCP (transducin 95.1 0.013 2.7E-07 53.8 2.1 38 12-49 71-112 (499)
40 PLN03215 ascorbic acid mannose 95.0 0.02 4.3E-07 54.4 3.3 37 15-51 3-40 (373)
41 PF13855 LRR_8: Leucine rich r 94.9 0.039 8.5E-07 37.8 3.7 34 272-306 21-56 (61)
42 KOG0617 Ras suppressor protein 94.4 0.001 2.2E-08 55.2 -6.0 56 277-338 128-184 (264)
43 PF13855 LRR_8: Leucine rich r 94.3 0.041 8.8E-07 37.8 2.7 54 229-285 1-58 (61)
44 KOG0618 Serine/threonine phosp 94.0 0.0024 5.1E-08 66.1 -5.8 80 248-336 358-439 (1081)
45 COG5238 RNA1 Ran GTPase-activa 93.7 0.064 1.4E-06 48.2 3.3 226 95-337 32-282 (388)
46 KOG2997 F-box protein FBX9 [Ge 93.3 0.063 1.4E-06 49.0 2.6 40 10-49 101-145 (366)
47 KOG4658 Apoptotic ATPase [Sign 93.0 0.019 4.1E-07 61.4 -1.2 62 158-219 543-606 (889)
48 COG5238 RNA1 Ran GTPase-activa 93.0 0.051 1.1E-06 48.8 1.7 211 110-337 17-252 (388)
49 PF12799 LRR_4: Leucine Rich r 92.8 0.055 1.2E-06 34.4 1.1 35 160-196 1-35 (44)
50 KOG0617 Ras suppressor protein 92.7 0.0024 5.3E-08 53.0 -6.5 87 242-338 72-161 (264)
51 KOG2982 Uncharacterized conser 91.2 0.022 4.9E-07 51.6 -2.7 102 160-261 45-158 (418)
52 KOG1644 U2-associated snRNP A' 90.4 0.57 1.2E-05 40.4 5.1 80 156-238 60-149 (233)
53 KOG3864 Uncharacterized conser 90.4 0.044 9.5E-07 47.0 -1.6 40 158-197 123-163 (221)
54 PRK15386 type III secretion pr 90.1 0.5 1.1E-05 45.8 5.1 132 181-336 48-186 (426)
55 KOG2739 Leucine-rich acidic nu 89.9 0.037 8E-07 49.3 -2.5 60 182-242 40-104 (260)
56 KOG0472 Leucine-rich repeat pr 89.7 0.0011 2.5E-08 62.1 -12.5 84 244-337 223-307 (565)
57 KOG4658 Apoptotic ATPase [Sign 89.3 0.37 8.1E-06 51.8 3.9 136 248-396 544-680 (889)
58 KOG3864 Uncharacterized conser 88.9 0.05 1.1E-06 46.6 -2.3 56 169-225 110-168 (221)
59 smart00367 LRR_CC Leucine-rich 88.8 0.21 4.6E-06 27.5 0.9 17 184-200 1-17 (26)
60 PF13013 F-box-like_2: F-box-l 88.0 0.56 1.2E-05 36.3 3.1 39 15-53 21-63 (109)
61 KOG2123 Uncharacterized conser 87.8 0.034 7.3E-07 50.1 -4.2 75 208-285 19-97 (388)
62 COG4886 Leucine-rich repeat (L 87.7 0.2 4.4E-06 48.8 0.7 148 152-308 131-286 (394)
63 KOG4237 Extracellular matrix p 86.7 0.66 1.4E-05 44.1 3.3 93 229-325 274-373 (498)
64 KOG0472 Leucine-rich repeat pr 86.2 0.1 2.2E-06 49.4 -2.2 39 294-337 500-538 (565)
65 KOG0618 Serine/threonine phosp 86.0 0.21 4.6E-06 52.3 -0.2 22 152-173 106-127 (1081)
66 KOG1859 Leucine-rich repeat pr 83.1 0.029 6.4E-07 56.9 -7.6 102 228-338 186-290 (1096)
67 KOG2123 Uncharacterized conser 83.0 0.04 8.8E-07 49.6 -6.0 96 187-284 21-125 (388)
68 KOG0274 Cdc4 and related F-box 82.3 0.67 1.4E-05 47.0 1.5 40 10-49 102-141 (537)
69 KOG2739 Leucine-rich acidic nu 80.9 0.84 1.8E-05 40.9 1.4 63 273-338 40-102 (260)
70 PLN03150 hypothetical protein; 80.5 2.1 4.6E-05 44.5 4.4 62 244-309 437-500 (623)
71 PF12799 LRR_4: Leucine Rich r 80.3 1.8 3.8E-05 27.4 2.4 12 324-335 21-32 (44)
72 KOG1644 U2-associated snRNP A' 78.6 0.92 2E-05 39.2 0.9 13 324-336 110-122 (233)
73 PLN03150 hypothetical protein; 78.3 1.7 3.6E-05 45.3 2.9 63 271-338 437-501 (623)
74 PF08387 FBD: FBD; InterPro: 78.0 3.4 7.3E-05 27.1 3.3 37 299-335 14-50 (51)
75 KOG3926 F-box proteins [Amino 76.9 1.1 2.3E-05 40.1 0.8 55 10-64 196-257 (332)
76 PF13516 LRR_6: Leucine Rich r 75.1 1.4 3E-05 23.6 0.7 21 160-180 2-22 (24)
77 COG4886 Leucine-rich repeat (L 71.7 0.69 1.5E-05 45.1 -1.9 167 157-337 113-287 (394)
78 PF09372 PRANC: PRANC domain; 60.6 7.4 0.00016 29.4 2.3 25 14-38 70-94 (97)
79 smart00579 FBD domain in FBox 56.8 16 0.00034 25.7 3.4 39 299-337 5-43 (72)
80 PF13504 LRR_7: Leucine rich r 56.0 8 0.00017 18.8 1.2 12 185-196 1-12 (17)
81 smart00368 LRR_RI Leucine rich 47.1 12 0.00027 20.8 1.2 22 160-181 2-23 (28)
82 KOG1859 Leucine-rich repeat pr 39.1 5.3 0.00011 41.4 -1.9 16 158-173 107-122 (1096)
83 PF00560 LRR_1: Leucine Rich R 34.9 31 0.00068 17.8 1.5 9 187-195 2-10 (22)
84 KOG0532 Leucine-rich repeat (L 34.9 4 8.7E-05 40.9 -3.4 29 278-307 213-242 (722)
85 KOG4237 Extracellular matrix p 34.3 13 0.00028 35.8 -0.1 18 155-172 86-103 (498)
86 COG4829 CatC1 Muconolactone de 27.2 25 0.00053 25.6 0.4 35 19-53 11-47 (98)
87 TIGR03221 muco_delta muconolac 22.5 22 0.00048 26.4 -0.6 32 18-53 13-46 (90)
88 KOG4408 Putative Mg2+ and Co2+ 21.0 23 0.00049 33.1 -1.0 37 16-52 8-44 (386)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5e-18 Score=149.36 Aligned_cols=275 Identities=20% Similarity=0.260 Sum_probs=155.3
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcccCc---eeeEecCccccccCCCCchhhHHHHHHHHHHHHHhccC
Q 014317 16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTN---SLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRG 92 (427)
Q Consensus 16 is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 92 (427)
|+.|||||+..||+.|+.+|..+.+.|||||.++-+.-. .+++..+.+. . ....+.+. +|
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~-----------p----~~l~~l~~--rg 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH-----------P----DVLGRLLS--RG 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC-----------h----hHHHHHHh--CC
Confidence 899999999999999999999999999999998633211 1333333222 2 22223322 24
Q ss_pred CCeeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEe
Q 014317 93 STINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNV 172 (427)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~ 172 (427)
|..+++.-...+ + ..+... ....+..+++++++....... .+- .+ ...|..||.|.|.+.++
T Consensus 161 --V~v~Rlar~~~~-~-prlae~-~~~frsRlq~lDLS~s~it~s---tl~-~i---------Ls~C~kLk~lSlEg~~L 222 (419)
T KOG2120|consen 161 --VIVFRLARSFMD-Q-PRLAEH-FSPFRSRLQHLDLSNSVITVS---TLH-GI---------LSQCSKLKNLSLEGLRL 222 (419)
T ss_pred --eEEEEcchhhhc-C-chhhhh-hhhhhhhhHHhhcchhheeHH---HHH-HH---------HHHHHhhhhcccccccc
Confidence 555554311111 1 111111 122345678888876521110 000 01 24678899999998888
Q ss_pred ChhhHHHHHhcCCccceeeeccCCCceeEE---EecCccccceEEEEecCCccEEE-----EECCceeEEEEeeeeeee-
Q 014317 173 NGKDIELFIQNCPLLDRLCVDHSKTLVRLR---VIGSSIQLKYLEIQSCYLMEEIE-----ISAPSLLSFRYYGQAIKI- 243 (427)
Q Consensus 173 ~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~l~~~~-----i~~p~L~~L~~~~~~~~~- 243 (427)
.|.-... ++.-..|++|+|.+|.|+..-. +-.+|++|..|.+++|....+.+ -..|+|..|.++|+.-.+
T Consensus 223 dD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 223 DDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred CcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 7763333 5566889999999998876422 22367889999999887544321 124788888887763221
Q ss_pred ------eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCC
Q 014317 244 ------NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRES 315 (427)
Q Consensus 244 ------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~ 315 (427)
....+|+|.+++++.+-. +.......+..++.|+.|.++.|..+. ..-.+...|.|++|++... . .
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--v--s 375 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--V--S 375 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccc--cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--c--C
Confidence 123466666666654432 112222333466666666666665554 2222345566666665221 1 1
Q ss_pred hHHHHHHHHhCCCccEE
Q 014317 316 LLGLTCIMKACPFLQKL 332 (427)
Q Consensus 316 ~~~l~~ll~~~p~L~~L 332 (427)
...+.-+.+.||+|+.-
T Consensus 376 dt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 376 DTTMELLKEMLSHLKIN 392 (419)
T ss_pred chHHHHHHHhCcccccc
Confidence 12234455566665543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.67 E-value=5.8e-18 Score=155.39 Aligned_cols=345 Identities=16% Similarity=0.160 Sum_probs=219.6
Q ss_pred CCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh------cccCceeeEecCccccccCCCCchhhHHHHHHHHHHHHHhc
Q 014317 17 NRLPDDILVNIISHLTLKEAARTSVLSNRWRNL------WTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELH 90 (427)
Q Consensus 17 s~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l------w~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 90 (427)
-.||+|++..|||+|+++...|++.+|+-|..+ |....-.+|-.+ .+..+ | ..+.+|
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD------------v~g~V----V-~~~~~R 135 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD------------VDGGV----V-ENMISR 135 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc------------CCCcc----e-ehHhhh
Confidence 369999999999999999999999999999876 554432222221 12222 2 223344
Q ss_pred cCCCeeEEEEEEecCCCCCccHHHHHHHH-hcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEee
Q 014317 91 RGSTINEFKVRFDLCDFHQSDITNWVYTV-LGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKT 169 (427)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~wl~~~-~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~ 169 (427)
.|..+++++++......+ ...-..+ ..+++++|.+..+. .+-...+. .....++.|+.|.|..
T Consensus 136 cgg~lk~LSlrG~r~v~~----sslrt~~~~CpnIehL~l~gc~-------~iTd~s~~-----sla~~C~~l~~l~L~~ 199 (483)
T KOG4341|consen 136 CGGFLKELSLRGCRAVGD----SSLRTFASNCPNIEHLALYGCK-------KITDSSLL-----SLARYCRKLRHLNLHS 199 (483)
T ss_pred hccccccccccccccCCc----chhhHHhhhCCchhhhhhhcce-------eccHHHHH-----HHHHhcchhhhhhhcc
Confidence 455599999976542221 1222222 34689999876653 12111111 0135789999999999
Q ss_pred EE-eChhhHHHHHhcCCccceeeeccCCCceeEEEe---cCccccceEEEEecCCccE-----EEEECCceeEEEEeee-
Q 014317 170 VN-VNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI---GSSIQLKYLEIQSCYLMEE-----IEISAPSLLSFRYYGQ- 239 (427)
Q Consensus 170 ~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~-----~~i~~p~L~~L~~~~~- 239 (427)
|. +++..++.+..+||+|+.|++.+|+.+..-.+. ..+..|+.+...+|...+. +.-.++-+.++++..+
T Consensus 200 c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 200 CSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred cchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc
Confidence 65 667788889999999999999999876542222 2456677777777765321 1112233444442222
Q ss_pred -----eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEcc
Q 014317 240 -----AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTP 311 (427)
Q Consensus 240 -----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 311 (427)
.....-..+-.|+.+....+..- -+..+.++.+.+++|+.|.+..|.... ....-..++.|+.|.++..+.
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~-~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDI-TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCC-chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 11112223445666665554431 234566777899999999999987655 112226778899988855433
Q ss_pred CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317 312 NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII 391 (427)
Q Consensus 312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i 391 (427)
.. ...+..+-.+||.|++|+++.|.....+|...-....|...+|..+++.+......+.- ..+.++++||.+.+
T Consensus 359 ~~--d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~l 433 (483)
T KOG4341|consen 359 IT--DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL---EHLSICRNLERIEL 433 (483)
T ss_pred eh--hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH---HHHhhCcccceeee
Confidence 32 22477888899999999998664333233322112357889999999999876643222 45678999999999
Q ss_pred Eeeccccch
Q 014317 392 EPSRYVRKK 400 (427)
Q Consensus 392 ~~~~~~~~~ 400 (427)
..+..+.+.
T Consensus 434 ~~~q~vtk~ 442 (483)
T KOG4341|consen 434 IDCQDVTKE 442 (483)
T ss_pred echhhhhhh
Confidence 888877654
No 3
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=98.85 E-value=2.8e-09 Score=70.71 Aligned_cols=43 Identities=40% Similarity=0.746 Sum_probs=41.7
Q ss_pred CCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317 350 FPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392 (427)
Q Consensus 350 ~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 392 (427)
.|+|..+||+.|++.||.|..+|+++++|+++||++||+|.|.
T Consensus 8 ~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 8 VPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 6899999999999999999999999999999999999999996
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.76 E-value=7.7e-09 Score=67.72 Aligned_cols=37 Identities=38% Similarity=0.656 Sum_probs=32.1
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317 16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF 52 (427)
Q Consensus 16 is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~ 52 (427)
|+.||+||+.+||++|+.+|.++++.|||+|+++...
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999999999987543
No 5
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=98.68 E-value=5.2e-08 Score=70.28 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=54.3
Q ss_pred CCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeeccccchhhhhhhh--hccCCCCCceEEEE
Q 014317 352 KYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVK--MLEAKVPHSVKLIV 421 (427)
Q Consensus 352 ~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ 421 (427)
+|...+|+.|+|.+|.|.++|+++++||++||+.||+|+|........... +-.+ ....++++..++.|
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~-~i~~~L~~~~~aS~~c~i~~ 71 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKL-EILKELLSLPRASSSCQVQF 71 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHH-HHHHHHHhCcCCCCceEEEe
Confidence 377889999999999999999999999999999999999998876544321 1122 12256788888876
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.54 E-value=5.7e-08 Score=106.10 Aligned_cols=217 Identities=18% Similarity=0.104 Sum_probs=124.8
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE---EECCceeE
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE---ISAPSLLS 233 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~---i~~p~L~~ 233 (427)
.+++|+.|+|+++.+.+..- ....+.|+.|++.++.....+ ..-..+++|+.|.++++.-...+. -..++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 66788888887776543210 134677888888776533211 111234678888887765221111 13477888
Q ss_pred EEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEE
Q 014317 234 FRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRV 308 (427)
Q Consensus 234 L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~ 308 (427)
|++.++.. +..+.+++.|+.+++..+... ..+...+..+++|+.|++++|.-.. .+..+..+++|++|.++.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS---GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccC---CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 88776532 334566777888877766522 2233334677888888888743222 556667777888888754
Q ss_pred EccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC--CccCCccEEEEeceecCccHHHHHHHHHhccccc
Q 014317 309 TTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK--YSHQHLKVVELHGFLGRQFDVELAQYLFQNATML 386 (427)
Q Consensus 309 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L 386 (427)
+.-.. . ++.-+.++++|++|+++.+.... . .|. ....+|+.+.+.+..-.. .....+.+.+.|
T Consensus 270 n~l~~-~---~p~~l~~l~~L~~L~Ls~n~l~~---~----~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L 334 (968)
T PLN00113 270 NKLSG-P---IPPSIFSLQKLISLDLSDNSLSG---E----IPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPRL 334 (968)
T ss_pred Ceeec-c---CchhHhhccCcCEEECcCCeecc---C----CChhHcCCCCCcEEECCCCccCC----cCChhHhcCCCC
Confidence 32111 1 22334567888888887543211 1 221 134678888776542111 111335678999
Q ss_pred cceEEEeec
Q 014317 387 EKLIIEPSR 395 (427)
Q Consensus 387 ~~l~i~~~~ 395 (427)
+.+.+..+.
T Consensus 335 ~~L~L~~n~ 343 (968)
T PLN00113 335 QVLQLWSNK 343 (968)
T ss_pred CEEECcCCC
Confidence 999987554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.46 E-value=1.5e-07 Score=103.85 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe-cCccccceEEEEecCCccEEEE--EC
Q 014317 152 SGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI-GSSIQLKYLEIQSCYLMEEIEI--SA 228 (427)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~-~~~~~L~~L~l~~c~~l~~~~i--~~ 228 (427)
+|.++..+++|+.|+|.++..-. .+.. ++.+++|+.|++.+|..+..+.-. ..+++|+.|.+++|..++.+.. ..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence 34555677788888877643111 0111 445677777777776654422111 1235566666666554444322 23
Q ss_pred CceeEEEEeee
Q 014317 229 PSLLSFRYYGQ 239 (427)
Q Consensus 229 p~L~~L~~~~~ 239 (427)
++|+.|.+.|+
T Consensus 704 ~sL~~L~Lsgc 714 (1153)
T PLN03210 704 KSLYRLNLSGC 714 (1153)
T ss_pred CCCCEEeCCCC
Confidence 45555555443
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.40 E-value=3e-07 Score=100.49 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=144.4
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE---EECCcee
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE---ISAPSLL 232 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~---i~~p~L~ 232 (427)
..+++|++|+|.++.+... +...+..+++|+.|++.++.....+ ..-..+++|+.|.+++|.-...+. -..++|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 4689999999999887543 2233678999999999988643221 111235789999999886322221 1347899
Q ss_pred EEEEeeee----eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317 233 SFRYYGQA----IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR 307 (427)
Q Consensus 233 ~L~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 307 (427)
.|.+.++. .+..+.++++|+.+++..+.. ...+...+..+++|+.|.+..+.-.. .+..+..+++|++|+++
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL---TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCcee---ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 99987763 234567889999999987763 22334445788999999999843222 56666778899999985
Q ss_pred EEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCC--CCccCCccEEEEeceecCccHHHHHHHHHhcccc
Q 014317 308 VTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFP--KYSHQHLKVVELHGFLGRQFDVELAQYLFQNATM 385 (427)
Q Consensus 308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~ 385 (427)
.+.-.. . ++..+..+++|+.|++..+.... . .| -....+|+.+.+.+..-.. + ....+...+.
T Consensus 293 ~n~l~~-~---~p~~~~~l~~L~~L~l~~n~~~~---~----~~~~~~~l~~L~~L~L~~n~l~~-~---~p~~l~~~~~ 357 (968)
T PLN00113 293 DNSLSG-E---IPELVIQLQNLEILHLFSNNFTG---K----IPVALTSLPRLQVLQLWSNKFSG-E---IPKNLGKHNN 357 (968)
T ss_pred CCeecc-C---CChhHcCCCCCcEEECCCCccCC---c----CChhHhcCCCCCEEECcCCCCcC-c---CChHHhCCCC
Confidence 432111 1 34456789999999997653211 1 11 1235678888887643211 1 1134567789
Q ss_pred ccceEEEeec
Q 014317 386 LEKLIIEPSR 395 (427)
Q Consensus 386 L~~l~i~~~~ 395 (427)
|+.+.+..+.
T Consensus 358 L~~L~Ls~n~ 367 (968)
T PLN00113 358 LTVLDLSTNN 367 (968)
T ss_pred CcEEECCCCe
Confidence 9999986543
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.35 E-value=1.6e-07 Score=61.76 Aligned_cols=38 Identities=42% Similarity=0.656 Sum_probs=32.0
Q ss_pred cCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317 15 LINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF 52 (427)
Q Consensus 15 ~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~ 52 (427)
.|++||+|++.+|+++|+.+|.++++.|||+|+++...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 36789999999999999999999999999999998664
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=3.6e-07 Score=100.79 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE---C
Q 014317 152 SGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS---A 228 (427)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~---~ 228 (427)
+|..+ .+.+|+.|+|.+..+.. +..-+..+++|+.|++.+|..+..+.-.+.+++|+.|.+.+|..+..+... .
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence 34443 45778888887765432 111235677888888877765443322223467888888887766554322 3
Q ss_pred CceeEEEEeeee----eeeeccCCcccceeeeeec
Q 014317 229 PSLLSFRYYGQA----IKINIENVPQLVDVSIRGS 259 (427)
Q Consensus 229 p~L~~L~~~~~~----~~~~~~~~~~L~~l~l~~~ 259 (427)
++|+.|++.++. .+.. .++++|+.+.+..+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCC
Confidence 677777777652 1111 14555666666554
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1e-08 Score=91.26 Aligned_cols=204 Identities=14% Similarity=0.150 Sum_probs=124.2
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE--EEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL--RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~ 237 (427)
..|+.|+|+...++...+..+++.|..|+.|.|.+-...+.+ .++. ..+|+.|.++.|.++....+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~----------- 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENAL----------- 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHH-----------
Confidence 469999999999999999999999999999999887655543 2222 26899999999887554321
Q ss_pred eeeeeeeccCCcccceeeeeeccccccchhhcccc-ccCCCceEEEEeccce-ee---cccccCCCCceeEEEEEEEccC
Q 014317 238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPII-SCFPQLKTLELDSCNE-VY---MQFSLFELPKLIDLRLRVTTPN 312 (427)
Q Consensus 238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~-~~---~~~~~~~~~~L~~L~l~~~~~~ 312 (427)
...+.++.+|.++.+++++... +.+..++ .--++++.|.|++|.. +. +.-....+++|.+|+|+-+..-
T Consensus 253 ----~ll~~scs~L~~LNlsWc~l~~--~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 253 ----QLLLSSCSRLDELNLSWCFLFT--EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred ----HHHHHhhhhHhhcCchHhhccc--hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 2245667777777777766432 1122222 3345777777877532 21 2222367788888887543322
Q ss_pred CCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317 313 RESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392 (427)
Q Consensus 313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 392 (427)
. .++...+..+|.|++|+++.|-.. +++.. +.-....+|..+.+.|+-.. .-++ .+.+.++.|+-=+-.
T Consensus 327 ~---~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~--~~l~s~psl~yLdv~g~vsd-t~me---l~~e~~~~lkin~q~ 395 (419)
T KOG2120|consen 327 K---NDCFQEFFKFNYLQHLSLSRCYDI--IPETL--LELNSKPSLVYLDVFGCVSD-TTME---LLKEMLSHLKINCQH 395 (419)
T ss_pred C---chHHHHHHhcchheeeehhhhcCC--ChHHe--eeeccCcceEEEEeccccCc-hHHH---HHHHhCcccccccee
Confidence 2 134556667888888888765321 11100 00012446777777776322 1233 555666666544443
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=1.4e-08 Score=94.40 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=101.1
Q ss_pred CCCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCCceeEE---EecCccccceEEEEecCCccEEEEECCcee
Q 014317 157 SGIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKTLVRLR---VIGSSIQLKYLEIQSCYLMEEIEISAPSLL 232 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~ 232 (427)
.++|+.+.|.+.+|. +++..+..+..-|+.|+.|++..|..+++.. +...|++|+.|.+++|+.+..=
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~-------- 232 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN-------- 232 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC--------
Confidence 345555555555543 4444555555555555555555555444321 1224455555555555543320
Q ss_pred EEEEeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeec---ccccCCCCceeEEEEEEE
Q 014317 233 SFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYM---QFSLFELPKLIDLRLRVT 309 (427)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~ 309 (427)
.+.....++..++++...++.... ...+......++-+.++++..|..+.- ...-..+..|+.|..+.
T Consensus 233 -------gv~~~~rG~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~- 303 (483)
T KOG4341|consen 233 -------GVQALQRGCKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS- 303 (483)
T ss_pred -------cchHHhccchhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC-
Confidence 111112223333333333222111 011111123444455555555543331 11113344455555422
Q ss_pred ccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece-ecCccHHHHHHHHHhccccccc
Q 014317 310 TPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF-LGRQFDVELAQYLFQNATMLEK 388 (427)
Q Consensus 310 ~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f-~g~~~e~~~~~~ll~~a~~L~~ 388 (427)
+.+.....+..+-++|++|+.|.++.+..-...+- .. .. -...+|+.+.+.++ .|.+..+. .+-.++|.|++
T Consensus 304 -~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f-t~-l~-rn~~~Le~l~~e~~~~~~d~tL~---sls~~C~~lr~ 376 (483)
T KOG4341|consen 304 -CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF-TM-LG-RNCPHLERLDLEECGLITDGTLA---SLSRNCPRLRV 376 (483)
T ss_pred -CCCCchHHHHHHhcCCCceEEEeccccchhhhhhh-hh-hh-cCChhhhhhcccccceehhhhHh---hhccCCchhcc
Confidence 33333444666777888888888877642110000 00 01 12346666666554 45555444 66678888888
Q ss_pred eEEEeecccc
Q 014317 389 LIIEPSRYVR 398 (427)
Q Consensus 389 l~i~~~~~~~ 398 (427)
+.++.+..+.
T Consensus 377 lslshce~it 386 (483)
T KOG4341|consen 377 LSLSHCELIT 386 (483)
T ss_pred CChhhhhhhh
Confidence 8887665554
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.27 E-value=3.9e-07 Score=86.25 Aligned_cols=87 Identities=11% Similarity=-0.028 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC--hhh---HHHHHhcCCccceeeeccCC
Q 014317 122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN--GKD---IELFIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~l~~c~ 196 (427)
.+++.+.+..+.......-.++ .....+++|++|.+.+..+. ... +...+..++.|+.|.+.+|.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~----------~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALA----------SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHH----------HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3588888876532211001112 22346678899988887766 333 33345567799999998876
Q ss_pred CceeE-----EEecCccccceEEEEecC
Q 014317 197 TLVRL-----RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 197 ~~~~l-----~i~~~~~~L~~L~l~~c~ 219 (427)
..... .+... ++|++|.+++|.
T Consensus 93 ~~~~~~~~~~~l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 93 LGPDGCGVLESLLRS-SSLQELKLNNNG 119 (319)
T ss_pred CChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence 43211 11111 347777777765
No 14
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.24 E-value=1.4e-06 Score=55.06 Aligned_cols=34 Identities=44% Similarity=0.692 Sum_probs=31.9
Q ss_pred CChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317 19 LPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF 52 (427)
Q Consensus 19 LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~ 52 (427)
||+|++.+|+++|+.+|..+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999998654
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.11 E-value=7.5e-07 Score=84.31 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=147.1
Q ss_pred CCCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCCCce--e-E-EE---ecCccccceEEEEecCCcc----
Q 014317 157 SGIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSKTLV--R-L-RV---IGSSIQLKYLEIQSCYLME---- 222 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~~~~--~-l-~i---~~~~~~L~~L~l~~c~~l~---- 222 (427)
..+++|+.|.+.++.+.+. .+...+...|.|++|.+.++.... . + .+ -..+++|+.|.+++|..-.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3567799999999998765 355566778899999998764321 0 0 00 0124689999999887321
Q ss_pred ---EEEEECCceeEEEEeeeeee--------eeccCC-cccceeeeeeccccc-cchhhccccccCCCceEEEEecccee
Q 014317 223 ---EIEISAPSLLSFRYYGQAIK--------INIENV-PQLVDVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEV 289 (427)
Q Consensus 223 ---~~~i~~p~L~~L~~~~~~~~--------~~~~~~-~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~ 289 (427)
.+.-. |+|++|+++++... ..+... +.|+++++..+.... ....+...+..+++++.|++++| .+
T Consensus 100 ~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l 177 (319)
T cd00116 100 VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GI 177 (319)
T ss_pred HHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CC
Confidence 11112 66999999876433 123445 789999998887542 11223444567789999999884 33
Q ss_pred e------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccc---cCCCCccCCccE
Q 014317 290 Y------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQ---QFPKYSHQHLKV 360 (427)
Q Consensus 290 ~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~---~~~~~~~~~L~~ 360 (427)
. ++..+..+++|++|+++.+.-.......+...+..+|+|+.|++..+..... .... ..+. ....|+.
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~--~~~~l~~~~~~-~~~~L~~ 254 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA--GAAALASALLS-PNISLLT 254 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH--HHHHHHHHHhc-cCCCceE
Confidence 3 2334456679999999655333323344566677889999999987532110 0000 0111 2468999
Q ss_pred EEEeceecC-ccHHHHHHHHHhccccccceEEEeecccc
Q 014317 361 VELHGFLGR-QFDVELAQYLFQNATMLEKLIIEPSRYVR 398 (427)
Q Consensus 361 v~i~~f~g~-~~e~~~~~~ll~~a~~L~~l~i~~~~~~~ 398 (427)
+.+.+..-. .....+++. +...+.|+.+.+..+.-..
T Consensus 255 L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGE 292 (319)
T ss_pred EEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcH
Confidence 998876432 233344444 4455899999887665443
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.08 E-value=7.4e-07 Score=86.45 Aligned_cols=225 Identities=19% Similarity=0.237 Sum_probs=118.6
Q ss_pred CCCCCCCCcEEEEeeEEeChh-hHHHHHhcCCccceeeeccC-------------CCceeEEEec------------Ccc
Q 014317 155 GLSGIKFLRCLHFKTVNVNGK-DIELFIQNCPLLDRLCVDHS-------------KTLVRLRVIG------------SSI 208 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c-------------~~~~~l~i~~------------~~~ 208 (427)
.|..+|.|+.|.|...++..- .+- +.+.|+|+.|.+... .+++.++++. .+.
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred Hhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 455567777777766554321 111 345556666555422 1112121111 124
Q ss_pred ccceEEEEecCCccEEEEE----CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceE
Q 014317 209 QLKYLEIQSCYLMEEIEIS----APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKT 280 (427)
Q Consensus 209 ~L~~L~l~~c~~l~~~~i~----~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 280 (427)
.|+.|.++... ++.++++ +++|+.|+++...+. ..+..+.+|+++.++.+. +++.-...+.++.+|+.
T Consensus 294 ~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns---i~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 294 SLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS---IDHLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc---hHHHHhhHHHHhhhhhh
Confidence 45555555433 5666665 478888877765321 233445667777776665 33333444578888899
Q ss_pred EEEeccceee--c---ccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCcc
Q 014317 281 LELDSCNEVY--M---QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSH 355 (427)
Q Consensus 281 L~l~~~~~~~--~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~ 355 (427)
|+|+. +++. + ...+..++.|+.|.+..+.-. .. -..-+.+.++||+|++..+.-..+..+ .+..
T Consensus 370 LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk--~I--~krAfsgl~~LE~LdL~~NaiaSIq~n------AFe~ 438 (873)
T KOG4194|consen 370 LDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK--SI--PKRAFSGLEALEHLDLGDNAIASIQPN------AFEP 438 (873)
T ss_pred hcCcC-CeEEEEEecchhhhccchhhhheeecCceee--ec--chhhhccCcccceecCCCCcceeeccc------cccc
Confidence 99887 6654 2 223355677777777433111 11 123446788899988875432111111 2233
Q ss_pred CCccEEEEec--eecCccHHHHHHHHHhccccccceEEEeecccc
Q 014317 356 QHLKVVELHG--FLGRQFDVELAQYLFQNATMLEKLIIEPSRYVR 398 (427)
Q Consensus 356 ~~L~~v~i~~--f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~~ 398 (427)
.+|+++.|.. |--.+.-.++...+.++.. +.-.+-.|.++.
T Consensus 439 m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l--q~sv~a~CayPe 481 (873)
T KOG4194|consen 439 MELKELVMNSSSFLCDCQLKWLAQWLYRRKL--QSSVIAKCAYPE 481 (873)
T ss_pred chhhhhhhcccceEEeccHHHHHHHHHhccc--ccceeeeccCCc
Confidence 4777777754 4333444455666665443 344444555443
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=9.3e-07 Score=80.68 Aligned_cols=255 Identities=17% Similarity=0.172 Sum_probs=150.6
Q ss_pred eeEEEEEEecCCCCCccHHHHHHHHhcC--CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEe
Q 014317 95 INEFKVRFDLCDFHQSDITNWVYTVLGK--RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNV 172 (427)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~--~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~ 172 (427)
+..+.++.. . -..-..+|+....+. .+++..++-...+... -.+|..+-. +.+++..+|.|+.|+|++..|
T Consensus 32 ~~~l~lsgn--t-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~-~Ei~e~L~~---l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 32 LTKLDLSGN--T-FGTEAARAIAKVLASKKELREVNLSDMFTGRLK-DEIPEALKM---LSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred eEEEeccCC--c-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcH-HHHHHHHHH---HHHHHhcCCceeEeecccccc
Confidence 666666532 1 223567888776553 5566655443222111 233332210 113345778999999999998
Q ss_pred Chh---hHHHHHhcCCccceeeeccCCCce--eEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeeee------
Q 014317 173 NGK---DIELFIQNCPLLDRLCVDHSKTLV--RLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAI------ 241 (427)
Q Consensus 173 ~~~---~l~~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~------ 241 (427)
+.+ .+..++++|..|++|.|.+|---. .-.+. .-|..|.+. .-.-++|+|+.+.+..+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~~~------kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELAVN------KKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHHHH------hccCCCcceEEEEeeccccccccHH
Confidence 754 688999999999999999995221 11111 123222211 1112456777776654421
Q ss_pred --eeeccCCcccceeeeeeccccccc-hhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccC
Q 014317 242 --KINIENVPQLVDVSIRGSHTFRVT-YFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPN 312 (427)
Q Consensus 242 --~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~ 312 (427)
-..+...|.|+++.+..+....-+ ..+..-+..|++|+.|+|.. +... +...++.+++|+.|+++.+.-.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccc
Confidence 123455688899888877654311 23334457999999999997 5544 5566788899999998766555
Q ss_pred CCChHHHHH-HHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEecee
Q 014317 313 RESLLGLTC-IMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL 367 (427)
Q Consensus 313 ~~~~~~l~~-ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~ 367 (427)
..+..++.. +-+..|+|+.|.+.++.-.. ++-...+.+---..+|+.+.+.+.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~-da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITR-DAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHH-HHHHHHHHHHhcchhhHHhcCCccc
Confidence 555555544 44568999999998764211 1110000010125578888887754
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.95 E-value=2.4e-06 Score=83.04 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCc--eeEEEecCccccceEEEEecCC--------------
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTL--VRLRVIGSSIQLKYLEIQSCYL-------------- 220 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~--~~l~i~~~~~~L~~L~l~~c~~-------------- 220 (427)
....+|+.|+|.+..+..-.-+. ++..|.||.|+|+..... ..-.++.. .++++|.+.+.+-
T Consensus 122 ~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeeccccccccccccccccchh
Confidence 33455888888877654321111 445666666666543211 11111111 3455555544320
Q ss_pred ---------ccEEEE---E-CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEE
Q 014317 221 ---------MEEIEI---S-APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLEL 283 (427)
Q Consensus 221 ---------l~~~~i---~-~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l 283 (427)
+..+.+ . -|+|+.|++....++ ..+.++|+|+.+.+..++...+ -.+.+-.+.+++.|+|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL---~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL---DDGAFYGLEKMEHLNL 276 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc---cCcceeeecccceeec
Confidence 121111 1 355555555544322 2345566666666655553221 1223345666677776
Q ss_pred eccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 284 DSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 284 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
.. +.+. ....+..+..|++|+|+.+.-...... -=..|++|+.|+++.+.
T Consensus 277 ~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 277 ET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNR 328 (873)
T ss_pred cc-chhhhhhcccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccc
Confidence 65 4443 233455666677777654422221111 11468889999888764
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=2.2e-06 Score=78.29 Aligned_cols=225 Identities=17% Similarity=0.170 Sum_probs=128.6
Q ss_pred CCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCC-CceeEEEecCccccceEEEEecCCccEEEEECCceeE
Q 014317 158 GIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSK-TLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLS 233 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~-~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~ 233 (427)
.+.+++.++|++.+|+.+ .+...+++-+.|++-++++.- +...-.+. +.|+.| ...-+.+|+|++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~---e~L~~l--------~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP---EALKML--------SKALLGCPKLQK 96 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH---HHHHHH--------HHHHhcCCceeE
Confidence 456788888888888764 455556666666666554321 11101111 112111 112245667777
Q ss_pred EEEeeeeee--------eeccCCcccceeeeeeccccc-----cc-----hhhccccccCCCceEEEEeccceee-----
Q 014317 234 FRYYGQAIK--------INIENVPQLVDVSIRGSHTFR-----VT-----YFVGPIISCFPQLKTLELDSCNEVY----- 290 (427)
Q Consensus 234 L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~-----~~-----~~~~~~~~~~~~l~~L~l~~~~~~~----- 290 (427)
++++++... -.+.++..|+++.+..+..-- +. ......+..-+.|+.+.... +...
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~ 175 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGAT 175 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHH
Confidence 777655321 123456777777777765311 00 01233345667788887775 4443
Q ss_pred -cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEecee-c
Q 014317 291 -MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL-G 368 (427)
Q Consensus 291 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~-g 368 (427)
+...+...++|+.+.+..+.-.+.....+..-+..||+|+.|+|..+.... .|...-+-+-+..++|+++.+-.|. -
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccchheeecccccccc
Confidence 344556667888888877766665665666677888999988886432111 1110000112345577777776653 3
Q ss_pred CccHHHHHHHHHhccccccceEEEeec
Q 014317 369 RQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 369 ~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
++.-.+++..+-+.+|.|+.+.+.++.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcch
Confidence 455578888888888888888876554
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.6e-06 Score=80.03 Aligned_cols=196 Identities=18% Similarity=0.169 Sum_probs=128.3
Q ss_pred CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCcee-
Q 014317 123 RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVR- 200 (427)
Q Consensus 123 ~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~- 200 (427)
.++++.++++... .++. -.....||+++.|+|+..-++. ..+-.++...|+||.|+|+.......
T Consensus 122 kL~~IsLdn~~V~------~~~~-------~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 122 KLREISLDNYRVE------DAGI-------EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhhheeecCcccc------ccch-------hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 6778888776432 1110 0124679999999999998887 46778899999999999986542211
Q ss_pred -EEEecCccccceEEEEecCC----ccEEEEECCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccc
Q 014317 201 -LRVIGSSIQLKYLEIQSCYL----MEEIEISAPSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPI 271 (427)
Q Consensus 201 -l~i~~~~~~L~~L~l~~c~~----l~~~~i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 271 (427)
-.....++.||.|.++.|.- +..+....|+|+.|.+.+... .........|++|+++.+..- ++.-...
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li--~~~~~~~ 266 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI--DFDQGYK 266 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc--ccccccc
Confidence 11112447899999999973 334566789999999887631 112233567899998877642 2222233
Q ss_pred cccCCCceEEEEeccceee---cccc-----cCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 272 ISCFPQLKTLELDSCNEVY---MQFS-----LFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 272 ~~~~~~l~~L~l~~~~~~~---~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
...+|+|+.|.++. .++. .+.. ...|++|++|.+..+.-. ++..+ .-++..++|+.|.+...
T Consensus 267 ~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~sl-~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWRSL-NHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCccc--ccccc-chhhccchhhhhhcccc
Confidence 47889999999887 3333 2322 478899999998554322 22222 23456788888887654
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=5.9e-05 Score=77.92 Aligned_cols=213 Identities=16% Similarity=0.187 Sum_probs=119.9
Q ss_pred CCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE---ECCceeEEEEe
Q 014317 161 FLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI---SAPSLLSFRYY 237 (427)
Q Consensus 161 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i---~~p~L~~L~~~ 237 (427)
+|+..+|.+.......++.+... .|++|.|.+........... =.++-+.-++.+ + .-.+|++|+++
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~--~L~sl~LGnl~~~k~~~~~~-------~~idi~~lL~~~-Ln~~sr~nL~~LdI~ 130 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQ--DLESLKLGNLDKIKQDYLDD-------ATIDIISLLKDL-LNEESRQNLQHLDIS 130 (699)
T ss_pred eeEEeeccceecchhHHHHHhhc--cccccCCcchHhhhhhhhhh-------hhccHHHHHHHH-HhHHHHHhhhhcCcc
Confidence 57777777777776666644433 39999998876543211000 000000000000 0 01344444444
Q ss_pred eee------eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEE-Ec
Q 014317 238 GQA------IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRV-TT 310 (427)
Q Consensus 238 ~~~------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~ 310 (427)
|.. ..-.-.-+|.|+.+.+.+.... ...+.++..++|+|..|++++ .++..-.++..++||+.|.+.. .+
T Consensus 131 G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L~mrnLe~ 207 (699)
T KOG3665|consen 131 GSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVLSMRNLEF 207 (699)
T ss_pred ccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHHhccCCCC
Confidence 421 1111233677777777665432 234667778999999999998 5666446777888888888632 22
Q ss_pred cCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceE
Q 014317 311 PNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLI 390 (427)
Q Consensus 311 ~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~ 390 (427)
. ....+..+ -+..+|+.|+|+............. .-+|..- |-++.+..+.|++-.-++++.++..=++|+++.
T Consensus 208 e---~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~q-Ylec~~~-LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 208 E---SYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQ-YLECGMV-LPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred C---chhhHHHH-hcccCCCeeeccccccccchHHHHH-HHHhccc-CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 2 22223333 3689999999997643322111111 1133211 334444456788777788889999888888887
Q ss_pred EE
Q 014317 391 IE 392 (427)
Q Consensus 391 i~ 392 (427)
..
T Consensus 282 ~~ 283 (699)
T KOG3665|consen 282 AL 283 (699)
T ss_pred hh
Confidence 54
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.22 E-value=7.1e-05 Score=63.61 Aligned_cols=63 Identities=25% Similarity=0.141 Sum_probs=29.1
Q ss_pred ccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 273 SCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
..+|+|+.|.+++ +.+. .-..+..+++|+.|++..+.... ....=..++..+|+|+.|+-...
T Consensus 85 ~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence 4577777777776 5554 22344667788888875443322 22223457788999999876543
No 23
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.08 E-value=0.0008 Score=37.39 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=22.8
Q ss_pred CCcEEEEeeEEeChh-hHHHHHhcCC
Q 014317 161 FLRCLHFKTVNVNGK-DIELFIQNCP 185 (427)
Q Consensus 161 ~L~~L~L~~~~~~~~-~l~~ll~~cp 185 (427)
+||+|+|.++.+.++ .+++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 599999999999775 7999999998
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=8.2e-05 Score=70.20 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=46.0
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEec-CccccceEEEEecC
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG-SSIQLKYLEIQSCY 219 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~-~~~~L~~L~l~~c~ 219 (427)
.++.||+|.|..|.++-.++..++..||.|+.|.+........-..+. -+.+|+.|++++..
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 578999999999999988899999999999999998764322111111 12578888887765
No 25
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.0007 Score=61.03 Aligned_cols=216 Identities=12% Similarity=0.103 Sum_probs=126.9
Q ss_pred CCCCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCceeEE-EecCccccceEEEEecCC----ccEEEEECCce
Q 014317 158 GIKFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVRLR-VIGSSIQLKYLEIQSCYL----MEEIEISAPSL 231 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~~c~~----l~~~~i~~p~L 231 (427)
.+..++.|+|.+..+.+ +++..|+...|.|+.|+|+......++. .+....+|+.|.+.+..- .+.+.-+-|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45789999999999988 4799999999999999998665444332 223446888888876541 12222234777
Q ss_pred eEEEEeeeeeeeec-------cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCce
Q 014317 232 LSFRYYGQAIKINI-------ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKL 301 (427)
Q Consensus 232 ~~L~~~~~~~~~~~-------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L 301 (427)
+.|.++.+..+... .-.+.+.+++...+... .......+...+|++..+.+..| .++ ..+....++.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEG-PLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecC-cccchhhcccCCCCCcc
Confidence 77766554222111 11223444444433321 11234455678999999999874 233 34455566666
Q ss_pred eEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCC-CCCcccccCCCCccCCccEEEEecee------cCccHHH
Q 014317 302 IDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGR-RLGKKRQQFPKYSHQHLKVVELHGFL------GRQFDVE 374 (427)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~-~~~~~~~~~~~~~~~~L~~v~i~~f~------g~~~e~~ 374 (427)
--|.|+.+.-+ ++++ +.-|..+|.|..|.+..+.... ..+..+. -....+|..|++.|=. -.+.|..
T Consensus 227 ~~LnL~~~~id--swas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err---~llIaRL~~v~vLNGskIss~er~dSEr~ 300 (418)
T KOG2982|consen 227 SCLNLGANNID--SWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERR---FLLIARLTKVQVLNGSKISSRERKDSERR 300 (418)
T ss_pred hhhhhcccccc--cHHH-HHHHcCCchhheeeccCCcccccccCCcce---EEEEeeccceEEecCcccchhhhhhhHHH
Confidence 66666543222 3443 4667899999999997654221 1221111 0133456666655421 2267788
Q ss_pred HHHHHHh
Q 014317 375 LAQYLFQ 381 (427)
Q Consensus 375 ~~~~ll~ 381 (427)
|++|.+.
T Consensus 301 fVRyym~ 307 (418)
T KOG2982|consen 301 FVRYYMS 307 (418)
T ss_pred HHHHHhh
Confidence 8888875
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.83 E-value=0.00013 Score=65.60 Aligned_cols=214 Identities=20% Similarity=0.218 Sum_probs=127.4
Q ss_pred CCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce----------------------e---EEEecCc
Q 014317 153 GRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV----------------------R---LRVIGSS 207 (427)
Q Consensus 153 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----------------------~---l~i~~~~ 207 (427)
|-....|.+|+++.++.|.. +.+..+...=|.|+.+.+.+...-. . ..+. ..
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~d-TW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSAD-TW 283 (490)
T ss_pred ccchHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecc-hH
Confidence 33456788999999988754 2333344556888888886542110 0 0011 12
Q ss_pred cccceEEEEecCCccEEE---EECCceeEEEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEE
Q 014317 208 IQLKYLEIQSCYLMEEIE---ISAPSLLSFRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLE 282 (427)
Q Consensus 208 ~~L~~L~l~~c~~l~~~~---i~~p~L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 282 (427)
..|..|++++.. +..+. --+|.++.|.++.+.+.. .+..+++|+.++++.+... .+.++-..+.|++.|.
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls----~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA----ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH----hhhhhHhhhcCEeeee
Confidence 456667776543 33222 226899988887664332 3566788888888876632 2334446788999999
Q ss_pred EeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEE
Q 014317 283 LDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVE 362 (427)
Q Consensus 283 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~ 362 (427)
|.. +.++..+++..+.+|..|+++.+.- .++.. ..-+.+.|.|++|.+.++......+- +..+-+....+-.++.
T Consensus 359 La~-N~iE~LSGL~KLYSLvnLDl~~N~I--e~lde-V~~IG~LPCLE~l~L~~NPl~~~vdY-RTKVLa~FGERaSE~~ 433 (490)
T KOG1259|consen 359 LAQ-NKIETLSGLRKLYSLVNLDLSSNQI--EELDE-VNHIGNLPCLETLRLTGNPLAGSVDY-RTKVLARFGERASEIS 433 (490)
T ss_pred hhh-hhHhhhhhhHhhhhheeccccccch--hhHHH-hcccccccHHHHHhhcCCCccccchH-HHHHHHHHhhhhhhee
Confidence 987 6666667778888899988854321 12222 33457899999999976532221000 0000011223445677
Q ss_pred EeceecCccHHHHHHHH
Q 014317 363 LHGFLGRQFDVELAQYL 379 (427)
Q Consensus 363 i~~f~g~~~e~~~~~~l 379 (427)
++|-.+.+.|+.-+.-+
T Consensus 434 LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 434 LDNEPGNQQELDTVLVL 450 (490)
T ss_pred cCCCCcchhhhhHHHHH
Confidence 77777777777765544
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00034 Score=70.12 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=28.8
Q ss_pred CCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317 13 EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF 52 (427)
Q Consensus 13 ~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~ 52 (427)
.+.....|++....+....+..+......++++|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 3556667778888888888777777777778888766443
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=0.00011 Score=73.58 Aligned_cols=80 Identities=18% Similarity=0.350 Sum_probs=56.6
Q ss_pred CCCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCCccE-----EEEE
Q 014317 157 SGIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYLMEE-----IEIS 227 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~-----~~i~ 227 (427)
..+++|+.|++..+. +++..+..+...||.||.|.+.+|..+.+. .+...|+.|++|.+++|..+.. +...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 456888999998887 788888888888999999998888864332 3334668889998888876421 2223
Q ss_pred CCceeEEEE
Q 014317 228 APSLLSFRY 236 (427)
Q Consensus 228 ~p~L~~L~~ 236 (427)
+|+|+.|.+
T Consensus 320 c~~l~~l~~ 328 (482)
T KOG1947|consen 320 CPNLRELKL 328 (482)
T ss_pred Ccchhhhhh
Confidence 566555543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.72 E-value=0.0014 Score=55.83 Aligned_cols=134 Identities=22% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHH-HHHHh
Q 014317 247 NVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLT-CIMKA 325 (427)
Q Consensus 247 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~ 325 (427)
+...++++++.+..... +..+-..+.+++.|+++. +.+..-++++.+++|++|.++.+.-. .+. .+..+
T Consensus 17 n~~~~~~L~L~~n~I~~----Ie~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~-----~i~~~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST----IENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRIS-----SISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS--------S-CHHHHHH
T ss_pred ccccccccccccccccc----ccchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCC-----ccccchHHh
Confidence 34456666666655322 233334678889999997 66665556778888999988544222 121 24457
Q ss_pred CCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeec
Q 014317 326 CPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 326 ~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
+|+|++|.+..+.-.. -++... +. .+.+|+.+.+.|---. ..-.+=.+++...|+|+.+.-..-.
T Consensus 87 lp~L~~L~L~~N~I~~-l~~l~~-L~--~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 87 LPNLQELYLSNNKISD-LNELEP-LS--SLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -TT--EEE-TTS---S-CCCCGG-GG--G-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCcCCEEECcCCcCCC-hHHhHH-HH--cCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence 8999999996543211 112211 11 3567888888753211 1234556888888999988754433
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.72 E-value=2.9e-05 Score=76.36 Aligned_cols=122 Identities=17% Similarity=0.172 Sum_probs=69.6
Q ss_pred cccceEEEEecCCccEEEEEC---CceeEEEEeeee---eeeeccCCcccceeeeeeccccccchhhccccccCCCceEE
Q 014317 208 IQLKYLEIQSCYLMEEIEISA---PSLLSFRYYGQA---IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTL 281 (427)
Q Consensus 208 ~~L~~L~l~~c~~l~~~~i~~---p~L~~L~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 281 (427)
++|++|.+++.. +.++.... .+|++|.++.+. .|-.+..++.|+++.+..+.... ..+..=++.+.+|+.+
T Consensus 245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F--eGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF--EGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc--cCCccchhhhhhhHHH
Confidence 455556555543 33332221 455555555442 22334456667777666544210 1122223456677777
Q ss_pred EEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 282 ELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 282 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
...+ +.++ +|++++.|..|+.|.|+-+ .+..++.-+.-.|.|+.|++.-+.
T Consensus 322 ~aan-N~LElVPEglcRC~kL~kL~L~~N-----rLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 322 HAAN-NKLELVPEGLCRCVKLQKLKLDHN-----RLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred Hhhc-cccccCchhhhhhHHHHHhccccc-----ceeechhhhhhcCCcceeeccCCc
Confidence 7776 6666 8888888999999988433 222344555567889999987543
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.71 E-value=0.0021 Score=67.19 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=56.1
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ 239 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~ 239 (427)
++|++|+|.++.+..- . ...+.|+.|++.++.... +.....+|+.|.++++. +..+....|+|+.|+++++
T Consensus 242 ~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls~N~L~~---Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 242 PELRTLEVSGNQLTSL--P---VLPPGLLELSIFSNPLTH---LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN 312 (788)
T ss_pred CCCcEEEecCCccCcc--c---CcccccceeeccCCchhh---hhhchhhcCEEECcCCc-cccccccccccceeECCCC
Confidence 5566666665544321 0 012455555555443111 11111355566665543 4444334466777776655
Q ss_pred eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEE
Q 014317 240 AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRL 306 (427)
Q Consensus 240 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 306 (427)
.+...-...+.|+.+++..+.. ..+.....+|+.|+|++ +.+. +|.. ..+|+.|.+
T Consensus 313 ~L~~Lp~lp~~L~~L~Ls~N~L-------~~LP~lp~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~L 369 (788)
T PRK15387 313 QLASLPALPSELCKLWAYNNQL-------TSLPTLPSGLQELSVSD-NQLASLPTL---PSELYKLWA 369 (788)
T ss_pred ccccCCCCcccccccccccCcc-------ccccccccccceEecCC-CccCCCCCC---Ccccceehh
Confidence 3321111112345554444331 11222224677777776 4443 3321 235555554
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.71 E-value=0.00096 Score=69.82 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=73.3
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEec-CccccceEEEEecCCccEEEEE-CCceeEEEEe
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG-SSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYY 237 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~-~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~ 237 (427)
++|++|+|.++.+.. +..-+ .+.|+.|.|.+|.... ++. -..+|+.|.++++. +..+.-. .++|+.|+++
T Consensus 220 ~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~---LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 220 GNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRITE---LPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVY 291 (754)
T ss_pred cCCCEEECCCCcccc--CChhh--hccccEEECcCCccCc---CChhHhCCCCEEECcCCc-cCccccccCCCCcEEECC
Confidence 467777776665432 11101 2356777776664321 111 01356777776443 4433322 2467777776
Q ss_pred eeeeeeeccCC-cccceeeeeeccccccchhhcccc-ccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCC
Q 014317 238 GQAIKINIENV-PQLVDVSIRGSHTFRVTYFVGPII-SCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRES 315 (427)
Q Consensus 238 ~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 315 (427)
++.+......+ +.|+.+++..+.... +. ...++|+.|.+++|.-..++..++ ++|+.|+++.+.-. .
T Consensus 292 ~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-------LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~--~ 360 (754)
T PRK15370 292 DNSIRTLPAHLPSGITHLNVQSNSLTA-------LPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT--V 360 (754)
T ss_pred CCccccCcccchhhHHHHHhcCCcccc-------CCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC--c
Confidence 65332111111 235555555443211 11 123577777777632222443332 57777777543211 1
Q ss_pred hHHHHHHHHhCCCccEEEEEecc
Q 014317 316 LLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 316 ~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
++.- -.++|+.|+|+.+.
T Consensus 361 ---LP~~--lp~~L~~LdLs~N~ 378 (754)
T PRK15370 361 ---LPET--LPPTITTLDVSRNA 378 (754)
T ss_pred ---CChh--hcCCcCEEECCCCc
Confidence 1111 12578888877553
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.51 E-value=0.0037 Score=65.40 Aligned_cols=13 Identities=15% Similarity=-0.133 Sum_probs=7.2
Q ss_pred CCCcEEEEeeEEe
Q 014317 160 KFLRCLHFKTVNV 172 (427)
Q Consensus 160 ~~L~~L~L~~~~~ 172 (427)
++|+.|+|.++.+
T Consensus 262 ~sL~~L~Ls~N~L 274 (788)
T PRK15387 262 PGLLELSIFSNPL 274 (788)
T ss_pred cccceeeccCCch
Confidence 4566666655443
No 34
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.31 E-value=3.9e-05 Score=75.43 Aligned_cols=229 Identities=16% Similarity=0.159 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCcEEEEeeEEeCh--hhHHHHHhcCCccceeeeccCCCcee-EEEecCccccceEEEEecCCccEEEE--
Q 014317 152 SGRGLSGIKFLRCLHFKTVNVNG--KDIELFIQNCPLLDRLCVDHSKTLVR-LRVIGSSIQLKYLEIQSCYLMEEIEI-- 226 (427)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~l~~c~~l~~~~i-- 226 (427)
+|+.+..+..|+.|+|++..+.. .. +....++-.|+|++.....- -.+-..+..|-.|+++..+ ++.+.-
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~----LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~ 169 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTN----LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQI 169 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchh----hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHH
Confidence 45556667788888888776542 22 22345566677765532110 0001112344455555443 222211
Q ss_pred -ECCceeEEEEeeeee-eeeccCCcccceeeeeecccc-ccchhhccccccCCCceEEEEeccceee-cccccCCCCcee
Q 014317 227 -SAPSLLSFRYYGQAI-KINIENVPQLVDVSIRGSHTF-RVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLI 302 (427)
Q Consensus 227 -~~p~L~~L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~ 302 (427)
.-.+|++|.++++.. .+.+..+|+++.+.+--.... ....++..-+..+.||..++++. +++. +|+.+..+++|+
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLR 248 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhh
Confidence 113455555665533 233344444444332211110 01122333334455555555553 4433 444444455555
Q ss_pred EEEEEEEcc------------------CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEe
Q 014317 303 DLRLRVTTP------------------NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELH 364 (427)
Q Consensus 303 ~L~l~~~~~------------------~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~ 364 (427)
.|+|+.+.- +...+..+++-+-..|+|++|....+. .+++|. |+ ..-.|..+ .
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~FeGi-----PS-GIGKL~~L--e 319 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFEGI-----PS-GIGKLIQL--E 319 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-ccccCC-----cc-chhhhhhh--H
Confidence 555432110 000233345555556666666664332 122222 10 11111111 1
Q ss_pred ceecCccHHHHHHHHHhccccccceEEEeec
Q 014317 365 GFLGRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 365 ~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
.|....+.++++.-=+-.|+.|+++.+....
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccccc
Confidence 2333344455555666667777777665444
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.29 E-value=0.001 Score=68.88 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEE
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQ 216 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~ 216 (427)
-||+|++|.+.+..+..++|..+..++|+|..|+|+++.-.. +.-.+.+++|+.|.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-LSGISRLKNLQVLSMR 203 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-cHHHhccccHHHHhcc
Confidence 589999999999999988899999999999999998874322 2222233555555443
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.12 E-value=0.0045 Score=64.89 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=91.9
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE-CCceeEEEEee
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYG 238 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~ 238 (427)
++|+.|+|.++.+.. +..-+ +++|+.|.+.++.. ..+... ..++|+.|.+++|. +..+... ..+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~L-tsLP~~-l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSNQL-TSIPAT-LPDTIQEMELSINR-ITELPERLPSALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcc-ccCChh-hhccccEEECcCCc-cCcCChhHhCCCCEEECcC
Confidence 579999999887653 11111 36899999998752 222111 11479999998876 4444322 24789998887
Q ss_pred eeeeeeccC-Ccccceeeeeeccccccchhhcccccc-CCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCC
Q 014317 239 QAIKINIEN-VPQLVDVSIRGSHTFRVTYFVGPIISC-FPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRES 315 (427)
Q Consensus 239 ~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~ 315 (427)
+.+...... .+.|+.+.++.+.... +... .++++.|.+++ +.+. ++..+ .++|+.|.++.+.-. .
T Consensus 272 N~L~~LP~~l~~sL~~L~Ls~N~Lt~-------LP~~lp~sL~~L~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N~Lt--~ 339 (754)
T PRK15370 272 NKISCLPENLPEELRYLSVYDNSIRT-------LPAHLPSGITHLNVQS-NSLTALPETL--PPGLKTLEAGENALT--S 339 (754)
T ss_pred CccCccccccCCCCcEEECCCCcccc-------CcccchhhHHHHHhcC-CccccCCccc--cccceeccccCCccc--c
Confidence 644321112 2468888887765321 2221 24688888887 4443 44332 368888887543211 1
Q ss_pred hHHHHHHHHhCCCccEEEEEecc
Q 014317 316 LLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 316 ~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
++.- -+++|+.|+++.+.
T Consensus 340 ---LP~~--l~~sL~~L~Ls~N~ 357 (754)
T PRK15370 340 ---LPAS--LPPELQVLDVSKNQ 357 (754)
T ss_pred ---CChh--hcCcccEEECCCCC
Confidence 1211 14799999998764
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.63 E-value=0.016 Score=55.89 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=17.2
Q ss_pred CCceEEEEeccceeecccccCCCCceeEEEEE
Q 014317 276 PQLKTLELDSCNEVYMQFSLFELPKLIDLRLR 307 (427)
Q Consensus 276 ~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 307 (427)
++|+.|.+++|.....+..++ .+|++|.++
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 467777776655444444333 466666664
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.15 E-value=0.026 Score=51.20 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=32.1
Q ss_pred ccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEE
Q 014317 250 QLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVT 309 (427)
Q Consensus 250 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 309 (427)
.|++++++.+.... +..-....|.++.|.++. +.+.....+..+++|++|+|+.+
T Consensus 285 ~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ----IDESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhccccccchhh----hhhhhhhccceeEEeccc-cceeeehhhhhcccceEeecccc
Confidence 45666665554221 223345677777777776 55553344667777777777543
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.10 E-value=0.013 Score=53.78 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=35.9
Q ss_pred CCCcCCCCC----hHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317 12 SEDLINRLP----DDILVNIISHLTLKEAARTSVLSNRWRNL 49 (427)
Q Consensus 12 ~~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vskrW~~l 49 (427)
..|.|+.|| |+|...||++|+..+...+-.|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 469999999 99999999999999999999999999875
No 40
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.03 E-value=0.02 Score=54.45 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=33.6
Q ss_pred cCCCCChHHHHHHHhcCC-hHHHHHHhhhhhhhhhhcc
Q 014317 15 LINRLPDDILVNIISHLT-LKEAARTSVLSNRWRNLWT 51 (427)
Q Consensus 15 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vskrW~~lw~ 51 (427)
.|++||+|+|..|..+|+ .-|.+|.+.||+.||..-.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 488999999999999997 6799999999999998644
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.88 E-value=0.039 Score=37.83 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=17.1
Q ss_pred cccCCCceEEEEeccceee--cccccCCCCceeEEEE
Q 014317 272 ISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRL 306 (427)
Q Consensus 272 ~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l 306 (427)
+..+++|+.|++++ +.+. .+..+..+++|++|.+
T Consensus 21 f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 21 FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEE
T ss_pred HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeC
Confidence 34556666666664 3333 2233455555555554
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.42 E-value=0.001 Score=55.23 Aligned_cols=56 Identities=29% Similarity=0.267 Sum_probs=33.2
Q ss_pred CceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 277 QLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 277 ~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
.++-|.++. +..+ +|.....+.+|+.|.+.-+ +...++.-++....|++|.|++++
T Consensus 128 tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-----dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 128 TLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-----DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-----chhhCcHHHHHHHHHHHHhcccce
Confidence 344455554 4444 5555666667777666322 445555556666777888887764
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.31 E-value=0.041 Score=37.77 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=33.4
Q ss_pred CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317 229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS 285 (427)
Q Consensus 229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 285 (427)
|+|++|.+.++... ..+.+++.|+.++++.+.. ...-...+..+++|+.|.+++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l---~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL---TSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE---SEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc---CccCHHHHcCCCCCCEEeCcC
Confidence 44555555544221 2356677788888876663 223334567888999999887
No 44
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.95 E-value=0.0024 Score=66.05 Aligned_cols=80 Identities=24% Similarity=0.251 Sum_probs=46.9
Q ss_pred CcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCChHHHHHHHHh
Q 014317 248 VPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESLLGLTCIMKA 325 (427)
Q Consensus 248 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~ 325 (427)
.+.|+.+++..+. +++.....+.++++|+.|+|++ +.+. .|. .+..+..|++|.|+.+ .+..+..=+..
T Consensus 358 ~~~Lq~LylanN~---Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-----kL~~Lp~tva~ 428 (1081)
T KOG0618|consen 358 HAALQELYLANNH---LTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-----KLTTLPDTVAN 428 (1081)
T ss_pred hHHHHHHHHhcCc---ccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-----hhhhhhHHHHh
Confidence 3445555555544 4455566678889999999997 6555 443 3466677777777544 33333333344
Q ss_pred CCCccEEEEEe
Q 014317 326 CPFLQKLILQL 336 (427)
Q Consensus 326 ~p~L~~L~i~~ 336 (427)
|+.|++|..+.
T Consensus 429 ~~~L~tL~ahs 439 (1081)
T KOG0618|consen 429 LGRLHTLRAHS 439 (1081)
T ss_pred hhhhHHHhhcC
Confidence 55555554443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.67 E-value=0.064 Score=48.17 Aligned_cols=226 Identities=15% Similarity=0.072 Sum_probs=119.8
Q ss_pred eeEEEEEEecCCCCCccHHHHHHHHhcC--CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEe
Q 014317 95 INEFKVRFDLCDFHQSDITNWVYTVLGK--RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNV 172 (427)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~--~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~ 172 (427)
+..+.++... ...-...|+....+. +++...++-...+.. .-.+|.++- + +.+....||.|+..+|+...|
T Consensus 32 ~~evdLSGNt---igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~-kde~~~~L~--~-Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 32 LVEVDLSGNT---IGTEAMEELCNVIANVRNLRVVNFSDAFTGRD-KDELYSNLV--M-LLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred eeEEeccCCc---ccHHHHHHHHHHHhhhcceeEeehhhhhhccc-HHHHHHHHH--H-HHHHHhcCCcceeeecccccc
Confidence 5666665432 223566788776543 344444322111110 012222210 0 112346789999999998887
Q ss_pred Ch---hhHHHHHhcCCccceeeeccCCCc--eeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeeeee-----
Q 014317 173 NG---KDIELFIQNCPLLDRLCVDHSKTL--VRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIK----- 242 (427)
Q Consensus 173 ~~---~~l~~ll~~cp~Le~L~l~~c~~~--~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~~----- 242 (427)
+. ..+..++++...|+.|.+.+|-.- ..-+|. ..|.+|.... =.-+.|.|+.+.+..+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~nK------Kaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAYNK------KAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHHHh------hhccCCCceEEEeccchhccCcHH
Confidence 64 357778888888999998887421 111222 1233332211 0124577777765433110
Q ss_pred ---eeccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEcc
Q 014317 243 ---INIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTP 311 (427)
Q Consensus 243 ---~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~ 311 (427)
..+.+-..|..+.+..+...- +.....-=+..+.+|+.|+|.. +... +...++.+++|+.|.+.-+.-
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 112223457777777666432 1111111125778999999987 5443 344568888899998854444
Q ss_pred CCCChHHHHHHHH--hCCCccEEEEEec
Q 014317 312 NRESLLGLTCIMK--ACPFLQKLILQLN 337 (427)
Q Consensus 312 ~~~~~~~l~~ll~--~~p~L~~L~i~~~ 337 (427)
+..+..++..-+. ..|+|..|-..++
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchh
Confidence 4433333333222 3688888877665
No 46
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.28 E-value=0.063 Score=48.97 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=33.9
Q ss_pred ccCCCcCCCCChHHHHHHHhc-----CChHHHHHHhhhhhhhhhh
Q 014317 10 EISEDLINRLPDDILVNIISH-----LTLKEAARTSVLSNRWRNL 49 (427)
Q Consensus 10 ~~~~D~is~LPd~iL~~Ils~-----L~~~d~~r~s~vskrW~~l 49 (427)
++..+.|+.||||||..||.. |+.++..++|.|||.|+..
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 455667899999999999865 4679999999999999865
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.05 E-value=0.019 Score=61.38 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCCCCcEEEEeeEEe-ChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317 158 GIKFLRCLHFKTVNV-NGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~ 219 (427)
.+|.|++|-+..... -...-...+...|.|..|++.+|.....+ ...+.+-.|+.|.++++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence 455677777776542 01111122455777777777776554422 111223456666665544
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.03 E-value=0.051 Score=48.75 Aligned_cols=211 Identities=16% Similarity=0.136 Sum_probs=114.3
Q ss_pred ccHHHHHHHHh-cCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC---hh------hHHH
Q 014317 110 SDITNWVYTVL-GKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN---GK------DIEL 179 (427)
Q Consensus 110 ~~~~~wl~~~~-~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~---~~------~l~~ 179 (427)
.++...+..+. ...+.+++++..+.++...-.+-- .+.+-.+|+.-+++....+ ++ .+-.
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~----------~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~ 86 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCN----------VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK 86 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHH----------HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH
Confidence 45666666553 467888888766443221111211 1234466777676665432 11 2334
Q ss_pred HHhcCCccceeeeccCC-CceeE----EEecCccccceEEEEecCCccEEEEE--CCceeEEEEeeeeeeeeccCCcccc
Q 014317 180 FIQNCPLLDRLCVDHSK-TLVRL----RVIGSSIQLKYLEIQSCYLMEEIEIS--APSLLSFRYYGQAIKINIENVPQLV 252 (427)
Q Consensus 180 ll~~cp~Le~L~l~~c~-~~~~l----~i~~~~~~L~~L~l~~c~~l~~~~i~--~p~L~~L~~~~~~~~~~~~~~~~L~ 252 (427)
.+..||.|+..+|++.- +.... .+.++...|++|.+++|. +..+.=. ...|.+|.+. -...+.|.|+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~n-----KKaa~kp~Le 160 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYN-----KKAADKPKLE 160 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHH-----hhhccCCCce
Confidence 46679999999997653 22211 222344678888888776 3322100 1112222111 1235667777
Q ss_pred eeeeeeccccc-cchhhccccccCCCceEEEEeccceee-------cccccCCCCceeEEEEEEEccCCCChHHHHHHHH
Q 014317 253 DVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEVY-------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMK 324 (427)
Q Consensus 253 ~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~ 324 (427)
.+....+...+ ........+..-.+++.+.+.. +++. ...++..+.+|+.|+|.-+......-..+...+.
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 77666554322 1111222334446788888876 5554 2234567778888888665554444344556666
Q ss_pred hCCCccEEEEEec
Q 014317 325 ACPFLQKLILQLN 337 (427)
Q Consensus 325 ~~p~L~~L~i~~~ 337 (427)
..|.|+.|.+..|
T Consensus 240 ~W~~lrEL~lnDC 252 (388)
T COG5238 240 EWNLLRELRLNDC 252 (388)
T ss_pred ccchhhhccccch
Confidence 7778888888765
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.79 E-value=0.055 Score=34.39 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 196 (427)
++|++|+|.++.+.+ +...++.||+|+.|++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 478888888887764 44447889999999998875
No 50
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.74 E-value=0.0024 Score=52.99 Aligned_cols=87 Identities=23% Similarity=0.244 Sum_probs=49.9
Q ss_pred eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHH
Q 014317 242 KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLG 318 (427)
Q Consensus 242 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 318 (427)
+..+.++|.|+.+.++.+.. . ...+=++.+|.+|.|++.+ +++. +|..+..+..|+.|.++-+ ++.-
T Consensus 72 p~~issl~klr~lnvgmnrl---~-~lprgfgs~p~levldlty-nnl~e~~lpgnff~m~tlralyl~dn-----dfe~ 141 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRL---N-ILPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDN-----DFEI 141 (264)
T ss_pred Chhhhhchhhhheecchhhh---h-cCccccCCCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcCC-----Cccc
Confidence 34456667777766654431 1 1222247889999999997 6655 4544444444555555221 3333
Q ss_pred HHHHHHhCCCccEEEEEecc
Q 014317 319 LTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 319 l~~ll~~~p~L~~L~i~~~~ 338 (427)
++.=.....+||.|.+..++
T Consensus 142 lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CChhhhhhcceeEEeeccCc
Confidence 34445667788888776443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=0.022 Score=51.64 Aligned_cols=102 Identities=12% Similarity=0.213 Sum_probs=67.4
Q ss_pred CCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCC---ccEEEEECCcee
Q 014317 160 KFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYL---MEEIEISAPSLL 232 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~---l~~~~i~~p~L~ 232 (427)
..|.-|.+.++.+.. ++++.+-+.|..+++|+|......+.- .|....|.|+.|.+++..- ++....-..+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 456678888888876 578888889999999999876543321 2233568888888876542 223332335888
Q ss_pred EEEEeeeeeee-----eccCCcccceeeeeeccc
Q 014317 233 SFRYYGQAIKI-----NIENVPQLVDVSIRGSHT 261 (427)
Q Consensus 233 ~L~~~~~~~~~-----~~~~~~~L~~l~l~~~~~ 261 (427)
.|.+.|...++ .+.+.|.+++++++.+..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 88888775443 234566677777666543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.41 E-value=0.57 Score=40.38 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCCCCCCcEEEEeeEEeCh--hhHHHHHhcCCccceeeeccCC--CceeEEEecCccccceEEEEecCC-----ccEEEE
Q 014317 156 LSGIKFLRCLHFKTVNVNG--KDIELFIQNCPLLDRLCVDHSK--TLVRLRVIGSSIQLKYLEIQSCYL-----MEEIEI 226 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~l~~c~~-----l~~~~i 226 (427)
+..++.|.+|.|.+.++.. ..+.. -.|+|..|.+.+.. .++++.=-++||+|+.|++-+.+- .....+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 4477899999999887653 34443 35888889887654 344444444668888887765431 112223
Q ss_pred E-CCceeEEEEee
Q 014317 227 S-APSLLSFRYYG 238 (427)
Q Consensus 227 ~-~p~L~~L~~~~ 238 (427)
. .|+|+.|++.+
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 2 36666666543
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=0.044 Score=46.98 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=19.2
Q ss_pred CCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCC
Q 014317 158 GIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKT 197 (427)
Q Consensus 158 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~ 197 (427)
+++.++.|.|.+|. +.+..++.+-...|+||.|.|..|..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence 34444455555443 44444444444445555555555543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.11 E-value=0.5 Score=45.79 Aligned_cols=132 Identities=19% Similarity=0.194 Sum_probs=66.8
Q ss_pred HhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE-ECCceeEEEEeee-eeeeeccCCcccceeeee
Q 014317 181 IQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI-SAPSLLSFRYYGQ-AIKINIENVPQLVDVSIR 257 (427)
Q Consensus 181 l~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i-~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~ 257 (427)
+..|+.++.|.+.+| .+..+ .++ ++|++|.+++|..+..+.- -.++|++|.+.++ .... -.+.|+.+.+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP---~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLP---NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG---LPESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCC---CCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc---cccccceEEeC
Confidence 445677777777777 33322 222 3577777777776544431 1357777777665 2211 11346666654
Q ss_pred eccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHHh-CCCccEEE
Q 014317 258 GSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKA-CPFLQKLI 333 (427)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~-~p~L~~L~ 333 (427)
.... ..+....++|+.|.+.++.... .+..+| ++|++|.+.. +.... +... -++|+.|+
T Consensus 121 ~n~~-------~~L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~--c~~i~------LP~~LP~SLk~L~ 183 (426)
T PRK15386 121 GSAT-------DSIKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTG--CSNII------LPEKLPESLQSIT 183 (426)
T ss_pred CCCC-------cccccCcchHhheeccccccccccccccccC--CcccEEEecC--CCccc------CcccccccCcEEE
Confidence 3221 1112233467777775422111 121111 5799998853 22111 0111 24788888
Q ss_pred EEe
Q 014317 334 LQL 336 (427)
Q Consensus 334 i~~ 336 (427)
+..
T Consensus 184 ls~ 186 (426)
T PRK15386 184 LHI 186 (426)
T ss_pred ecc
Confidence 754
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.88 E-value=0.037 Score=49.29 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=28.1
Q ss_pred hcCCccceeeeccCCCceeEEEecCccccceEEEEec--C---CccEEEEECCceeEEEEeeeeee
Q 014317 182 QNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSC--Y---LMEEIEISAPSLLSFRYYGQAIK 242 (427)
Q Consensus 182 ~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c--~---~l~~~~i~~p~L~~L~~~~~~~~ 242 (427)
...-.|+.|.+.+|.......++. +++||.|.++.. . .+..+...+|+|+++.++++.+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeecccCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334444445554443322222221 256666666544 1 12223334577777777766443
No 56
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.71 E-value=0.0011 Score=62.10 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=54.8
Q ss_pred eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317 244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCI 322 (427)
Q Consensus 244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 322 (427)
.+.+|..|.+++++.+.. ...-.+....++++..|++.. +.++ +|..+..+.+|..|+++.+ +..+++.-
T Consensus 223 ef~gcs~L~Elh~g~N~i---~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-----~is~Lp~s 293 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQI---EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-----DISSLPYS 293 (565)
T ss_pred CCCccHHHHHHHhcccHH---HhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-----ccccCCcc
Confidence 567778888888776652 222233346888999999987 6666 7888888888888888433 22333334
Q ss_pred HHhCCCccEEEEEec
Q 014317 323 MKACPFLQKLILQLN 337 (427)
Q Consensus 323 l~~~p~L~~L~i~~~ 337 (427)
+.+. .|+.|-+.++
T Consensus 294 Lgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGN 307 (565)
T ss_pred cccc-eeeehhhcCC
Confidence 4454 6666666664
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=89.33 E-value=0.37 Score=51.81 Aligned_cols=136 Identities=23% Similarity=0.190 Sum_probs=71.2
Q ss_pred CcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhC
Q 014317 248 VPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKAC 326 (427)
Q Consensus 248 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~ 326 (427)
+|.|+.+-+..... ++......|+..+|.|+.|+|++|.... +|+.+..+-+|++|+++.. ....++.-+++.
T Consensus 544 ~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-----~I~~LP~~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-----GISHLPSGLGNL 617 (889)
T ss_pred CCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-----CccccchHHHHH
Confidence 34455554444321 1122334456777888888888655544 7777777777777777433 223345556666
Q ss_pred CCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeecc
Q 014317 327 PFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRY 396 (427)
Q Consensus 327 p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~ 396 (427)
.+|.+|++......... . .-.+...+|+++.+..-.-.. ....++-+ ++...|+.+.++.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~----~-~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el-~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI----P-GILLELQSLRVLRLPRSALSN-DKLLLKEL-ENLEHLENLSITISSV 680 (889)
T ss_pred Hhhheeccccccccccc----c-chhhhcccccEEEeecccccc-chhhHHhh-hcccchhhheeecchh
Confidence 67777777654321100 0 112345677777766543111 11112222 5666666666655543
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=0.05 Score=46.65 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=38.7
Q ss_pred eEEeChhhHHHHHhcCCccceeeeccCCCceeEEE---ecCccccceEEEEecCCccEEE
Q 014317 169 TVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV---IGSSIQLKYLEIQSCYLMEEIE 225 (427)
Q Consensus 169 ~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~~~ 225 (427)
++.+..+.++. +..++.++.|.+.+|..+++..+ ....++|+.|.+++|+.+.+-.
T Consensus 110 ds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 110 DSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred CchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 33344445555 66799999999999998775422 2234889999999888765543
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.75 E-value=0.21 Score=27.54 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.7
Q ss_pred CCccceeeeccCCCcee
Q 014317 184 CPLLDRLCVDHSKTLVR 200 (427)
Q Consensus 184 cp~Le~L~l~~c~~~~~ 200 (427)
||.|++|+|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 78888999988887654
No 60
>PF13013 F-box-like_2: F-box-like domain
Probab=88.04 E-value=0.56 Score=36.31 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=30.8
Q ss_pred cCCCCChHHHHHHHhcCChHHHHHHhhhhh---hhhhh-cccC
Q 014317 15 LINRLPDDILVNIISHLTLKEAARTSVLSN---RWRNL-WTFT 53 (427)
Q Consensus 15 ~is~LPd~iL~~Ils~L~~~d~~r~s~vsk---rW~~l-w~~~ 53 (427)
.+.+||+||++.|+.+-+..+...++..|+ .|++. |..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999988887776 44444 4443
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.82 E-value=0.034 Score=50.05 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=39.4
Q ss_pred cccceEEEEecCCccEEEE--ECCceeEEEEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEE
Q 014317 208 IQLKYLEIQSCYLMEEIEI--SAPSLLSFRYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLEL 283 (427)
Q Consensus 208 ~~L~~L~l~~c~~l~~~~i--~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l 283 (427)
.+.+.|..++|. +.+|.| ..|.|+.|.++-+.+. -.+..|.+|+++++..+....++ -..++.++|+|+.|.|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld--EL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD--ELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH--HHHHHhcCchhhhHhh
Confidence 356778888887 665544 3577777766644321 12344555666665554432211 1223455555555555
Q ss_pred ec
Q 014317 284 DS 285 (427)
Q Consensus 284 ~~ 285 (427)
..
T Consensus 96 ~E 97 (388)
T KOG2123|consen 96 DE 97 (388)
T ss_pred cc
Confidence 43
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=87.69 E-value=0.2 Score=48.83 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=81.9
Q ss_pred CCCCCCCC-CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE--C
Q 014317 152 SGRGLSGI-KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS--A 228 (427)
Q Consensus 152 lp~~~~~~-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~--~ 228 (427)
+|+....+ ++|+.|++.+..+..-. .-+..+|.|+.|.+.++...+........+.|+.|.+++.. +..+... .
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~ 207 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIEL 207 (394)
T ss_pred Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhh
Confidence 34434444 37888888877664421 22567889999999888654432221123678888887765 4544432 3
Q ss_pred Cc-eeEEEEeeee-e--eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeE
Q 014317 229 PS-LLSFRYYGQA-I--KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLID 303 (427)
Q Consensus 229 p~-L~~L~~~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~ 303 (427)
++ |+++.+.+.. . ...+.....+..+.+..... . .+...+..+++++.|.++. ..+. +.. +....+++.
T Consensus 208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~---~-~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~ 281 (394)
T COG4886 208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL---E-DLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRE 281 (394)
T ss_pred hhhhhhhhhcCCcceecchhhhhcccccccccCCcee---e-eccchhccccccceecccc-cccccccc-ccccCccCE
Confidence 43 7777766552 1 22233344444444222221 0 1124456677777887776 4444 333 666677777
Q ss_pred EEEEE
Q 014317 304 LRLRV 308 (427)
Q Consensus 304 L~l~~ 308 (427)
|.++.
T Consensus 282 L~~s~ 286 (394)
T COG4886 282 LDLSG 286 (394)
T ss_pred EeccC
Confidence 77643
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=86.73 E-value=0.66 Score=44.11 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=64.5
Q ss_pred CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCcee
Q 014317 229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~ 302 (427)
|+|+.+.+++..+. -.+.++..+++++++.+. +...-...+.++.+|+.|+|.+ +.+. .+..+.....|.
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~---l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK---LEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLS 349 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcch---HHHHHHHhhhccccceeeeecC-CeeEEEecccccccceee
Confidence 78888888877443 245667788888888776 3444456678999999999998 7776 556667778888
Q ss_pred EEEEEEEccCCC-ChHHHHHHHHh
Q 014317 303 DLRLRVTTPNRE-SLLGLTCIMKA 325 (427)
Q Consensus 303 ~L~l~~~~~~~~-~~~~l~~ll~~ 325 (427)
+|.|-.+...+. .+.|+..-++.
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eeehccCcccCccchHHHHHHHhh
Confidence 888643332222 56666666664
No 64
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.19 E-value=0.1 Score=49.45 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=27.1
Q ss_pred ccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 294 SLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 294 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
++..+.+|++|++.-+ +...++-++++|.+|++|+|.++
T Consensus 500 ~l~nm~nL~tLDL~nN-----dlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNN-----DLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred HhhhhhhcceeccCCC-----chhhCChhhccccceeEEEecCC
Confidence 3556667777776322 55667778888888888888764
No 65
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=85.97 E-value=0.21 Score=52.29 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCcEEEEeeEEeC
Q 014317 152 SGRGLSGIKFLRCLHFKTVNVN 173 (427)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~ 173 (427)
+|..+..+.+|+.|+++...|.
T Consensus 106 lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred CchhHHhhhcccccccchhccC
Confidence 4555566667777777766654
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=83.09 E-value=0.029 Score=56.92 Aligned_cols=102 Identities=20% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCceeEEEEeeeee-e-eeccCCcccceeeeeeccccccchhhcccc-ccCCCceEEEEeccceeecccccCCCCceeEE
Q 014317 228 APSLLSFRYYGQAI-K-INIENVPQLVDVSIRGSHTFRVTYFVGPII-SCFPQLKTLELDSCNEVYMQFSLFELPKLIDL 304 (427)
Q Consensus 228 ~p~L~~L~~~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L 304 (427)
.|.|++|+++.+.+ . -.+..++.|+.++++.+.... +..+- .+|. |..|.+.+ +.+....++..+.+|++|
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~----vp~l~~~gc~-L~~L~lrn-N~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRH----VPQLSMVGCK-LQLLNLRN-NALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhcc----ccccchhhhh-heeeeecc-cHHHhhhhHHhhhhhhcc
Confidence 47777777765532 1 134567788888887766432 12222 2333 77777776 555544556677788888
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
+++.+.-... .-..+|.....|..|.++++.
T Consensus 260 DlsyNll~~h---seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYNLLSEH---SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHhhhhcc---hhhhHHHHHHHHHHHhhcCCc
Confidence 8865532221 123344555667788888763
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.96 E-value=0.04 Score=49.56 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=47.5
Q ss_pred cceeeeccCCCceeEEEecCccccceEEEEecCCccEEE--EECCceeEEEEeeeeee-----eeccCCcccceeeeeec
Q 014317 187 LDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE--ISAPSLLSFRYYGQAIK-----INIENVPQLVDVSIRGS 259 (427)
Q Consensus 187 Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~--i~~p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~ 259 (427)
.++|+..+|. ++++.|...-+.|+.|.++-.. +..+. .+|.+|++|++..+.+. ..+.++|+|+.+++.-+
T Consensus 21 vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 21 VKKLNCWGCG-LDDISICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhhhcccCCC-ccHHHHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3345444442 3333443333566666665433 22221 23566666666544221 23467788888887765
Q ss_pred cccc-cch-hhccccccCCCceEEEEe
Q 014317 260 HTFR-VTY-FVGPIISCFPQLKTLELD 284 (427)
Q Consensus 260 ~~~~-~~~-~~~~~~~~~~~l~~L~l~ 284 (427)
.... .+. .-...+..+|+|+.|+=.
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred CcccccchhHHHHHHHHcccchhccCc
Confidence 4433 111 112234566777766543
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.26 E-value=0.67 Score=46.96 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=37.0
Q ss_pred ccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317 10 EISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49 (427)
Q Consensus 10 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l 49 (427)
....|.++.||-|+...|+++|+.++.+..+.||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3457999999999999999999999999999999999876
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.89 E-value=0.84 Score=40.87 Aligned_cols=63 Identities=25% Similarity=0.238 Sum_probs=38.3
Q ss_pred ccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 273 SCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
..+..++.|.+.+ ..+.....++.+++|+.|.++-+... ...++..++..||+|++|+++++.
T Consensus 40 d~~~~le~ls~~n-~gltt~~~~P~Lp~LkkL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 40 DEFVELELLSVIN-VGLTTLTNFPKLPKLKKLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccccchhhhhhhc-cceeecccCCCcchhhhhcccCCccc--ccccceehhhhCCceeEEeecCCc
Confidence 3444555555544 22333445677888898888544221 223355667788999999998764
No 70
>PLN03150 hypothetical protein; Provisional
Probab=80.47 E-value=2.1 Score=44.51 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=36.9
Q ss_pred eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEE
Q 014317 244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVT 309 (427)
Q Consensus 244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~ 309 (427)
.+..++.|+.+++..+.. ...+...+..+++|+.|+|+. +.+. .|..+..+++|+.|+|+.+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 437 DISKLRHLQSINLSGNSI---RGNIPPSLGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred HHhCCCCCCEEECCCCcc---cCcCChHHhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEECcCC
Confidence 345566677777766552 222333346677777777776 3333 5556666777777777543
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=80.32 E-value=1.8 Score=27.40 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=5.5
Q ss_pred HhCCCccEEEEE
Q 014317 324 KACPFLQKLILQ 335 (427)
Q Consensus 324 ~~~p~L~~L~i~ 335 (427)
.++|+|+.|+++
T Consensus 21 ~~l~~L~~L~l~ 32 (44)
T PF12799_consen 21 SNLPNLETLNLS 32 (44)
T ss_dssp TTCTTSSEEEET
T ss_pred hCCCCCCEEEec
Confidence 444444444443
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.60 E-value=0.92 Score=39.16 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=6.7
Q ss_pred HhCCCccEEEEEe
Q 014317 324 KACPFLQKLILQL 336 (427)
Q Consensus 324 ~~~p~L~~L~i~~ 336 (427)
..||.|+.|++.+
T Consensus 110 a~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 110 ASCPKLEYLTLLG 122 (233)
T ss_pred ccCCccceeeecC
Confidence 3455555555543
No 73
>PLN03150 hypothetical protein; Provisional
Probab=78.28 E-value=1.7 Score=45.29 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=44.9
Q ss_pred ccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 271 IISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 271 ~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
-+..+++|+.|.|++ +.+. ++..+..+++|+.|+|+.+.-.. .++..+..+++|+.|+++.+.
T Consensus 437 ~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 437 DISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNG----SIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred HHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCC----CCchHHhcCCCCCEEECcCCc
Confidence 346788999999997 4443 66667888899999885442221 134566789999999998764
No 74
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=77.96 E-value=3.4 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.6
Q ss_pred CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEE
Q 014317 299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQ 335 (427)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 335 (427)
.+|+.+.+........+..-+..++++++.|+++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 6789988864434444666678899999999999986
No 75
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=76.88 E-value=1.1 Score=40.14 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=42.8
Q ss_pred ccCCCcCCCCChHHHHHHHhcCC-hHHHHHHhhhhhhh------hhhcccCceeeEecCccc
Q 014317 10 EISEDLINRLPDDILVNIISHLT-LKEAARTSVLSNRW------RNLWTFTNSLEFDASESL 64 (427)
Q Consensus 10 ~~~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vskrW------~~lw~~~~~L~~~~~~~~ 64 (427)
+++.=-+.+||.|++..|+.+|+ -+|++.++.+-.-- +.+|+.+.++.|....+.
T Consensus 196 ~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 196 DPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred CcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455799999999999999998 88998888763332 456888888888877654
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.10 E-value=1.4 Score=23.55 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=12.4
Q ss_pred CCCcEEEEeeEEeChhhHHHH
Q 014317 160 KFLRCLHFKTVNVNGKDIELF 180 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~l 180 (427)
++|++|+|+++.++++.+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 567777777777766655543
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=71.70 E-value=0.69 Score=45.11 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=91.6
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcC-CccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE---ECCcee
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNC-PLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI---SAPSLL 232 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i---~~p~L~ 232 (427)
..++.++.|.+.+..+.+- .....-. ++|+.|.+.+.....-..-...+++|+.|.++.+. +..+.- ..++|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccccC--ccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 3456788888887766431 1112222 47888888765433211111235788888888776 444433 567888
Q ss_pred EEEEeeeeeeeecc---CCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEE
Q 014317 233 SFRYYGQAIKINIE---NVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRV 308 (427)
Q Consensus 233 ~L~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~ 308 (427)
.|.+++......-. ....|+++.+...... .....+..+.++..|.+.. .... .+..+...+++++|.+.-
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~----~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSII----ELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcce----ecchhhhhcccccccccCC-ceeeeccchhccccccceecccc
Confidence 88888775432221 2333777766655311 1111224555555555443 3333 345556667788887743
Q ss_pred EccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 309 TTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 309 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+.-.. +.. +....+|+.|++++.
T Consensus 265 n~i~~-----i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 265 NQISS-----ISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccc-----ccc-ccccCccCEEeccCc
Confidence 32211 112 566778888888764
No 78
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=60.61 E-value=7.4 Score=29.40 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.7
Q ss_pred CcCCCCChHHHHHHHhcCChHHHHH
Q 014317 14 DLINRLPDDILVNIISHLTLKEAAR 38 (427)
Q Consensus 14 D~is~LPd~iL~~Ils~L~~~d~~r 38 (427)
..|+.||.|+-..||++|+-.|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6899999999999999999998754
No 79
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=56.80 E-value=16 Score=25.68 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.8
Q ss_pred CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
.+|+.+.+........+..-+..++++++.|+++.|...
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEee
Confidence 458888875433333366667889999999999999764
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=55.98 E-value=8 Score=18.77 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=5.5
Q ss_pred CccceeeeccCC
Q 014317 185 PLLDRLCVDHSK 196 (427)
Q Consensus 185 p~Le~L~l~~c~ 196 (427)
|+|+.|+|.+|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 345555555554
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.08 E-value=12 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=17.1
Q ss_pred CCCcEEEEeeEEeChhhHHHHH
Q 014317 160 KFLRCLHFKTVNVNGKDIELFI 181 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll 181 (427)
++|++|+|+++.++++....+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5789999999999887655543
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=39.07 E-value=5.3 Score=41.44 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=9.6
Q ss_pred CCCCCcEEEEeeEEeC
Q 014317 158 GIKFLRCLHFKTVNVN 173 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~ 173 (427)
.|.+|+.|.|.+|.++
T Consensus 107 pF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLS 122 (1096)
T ss_pred cccceeeEEecCcchh
Confidence 4556666666666554
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=34.94 E-value=31 Score=17.79 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=4.8
Q ss_pred cceeeeccC
Q 014317 187 LDRLCVDHS 195 (427)
Q Consensus 187 Le~L~l~~c 195 (427)
||.|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=34.88 E-value=4 Score=40.93 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=14.5
Q ss_pred ceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317 278 LKTLELDSCNEVY-MQFSLFELPKLIDLRLR 307 (427)
Q Consensus 278 l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 307 (427)
|..|+++ |+.+. +|..+..+..|+.|.|+
T Consensus 213 Li~lDfS-cNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 213 LIRLDFS-CNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred eeeeecc-cCceeecchhhhhhhhheeeeec
Confidence 4445555 34443 55555555555555554
No 85
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=34.26 E-value=13 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=12.9
Q ss_pred CCCCCCCCcEEEEeeEEe
Q 014317 155 GLSGIKFLRCLHFKTVNV 172 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~ 172 (427)
.|..+++|++|+|++..+
T Consensus 86 aF~~l~~LRrLdLS~N~I 103 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNI 103 (498)
T ss_pred hccchhhhceecccccch
Confidence 456778888888887653
No 86
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.24 E-value=25 Score=25.63 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=25.7
Q ss_pred CChHHHHHHHhcCChHHHHHHhhhhh--hhhhhcccC
Q 014317 19 LPDDILVNIISHLTLKEAARTSVLSN--RWRNLWTFT 53 (427)
Q Consensus 19 LPd~iL~~Ils~L~~~d~~r~s~vsk--rW~~lw~~~ 53 (427)
+||+.=.....++-.++.++..-+-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 56655556666777889888887754 799999943
No 87
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=22.49 E-value=22 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.648 Sum_probs=20.8
Q ss_pred CCChHHHHHHHhcCChHHHHHHhhhh--hhhhhhcccC
Q 014317 18 RLPDDILVNIISHLTLKEAARTSVLS--NRWRNLWTFT 53 (427)
Q Consensus 18 ~LPd~iL~~Ils~L~~~d~~r~s~vs--krW~~lw~~~ 53 (427)
++|.+.... +-.+|+.++.-+- -+|+|+|+-.
T Consensus 13 ~~~~~~~~~----i~a~Eka~a~eLq~~Gk~~~lWRv~ 46 (90)
T TIGR03221 13 DMPAEKAAA----IKAREKAYAQELQREGKWRHLWRVA 46 (90)
T ss_pred CCCHHHHHH----HHHHHHHHHHHHHhCCceEEEEEec
Confidence 344444444 4456888877664 4899999953
No 88
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=20.98 E-value=23 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=32.3
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317 16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF 52 (427)
Q Consensus 16 is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~ 52 (427)
+..+|+++++.|++++..+++++.+.+|+|-..+-+.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 4478999999999999999999999999999876443
Done!